Citrus Sinensis ID: 001163

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130----
Protein Sequence
MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLNWQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQPTPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQTADSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGRWGTSPPNENGAGPSTTAGVAGAEQSQR
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHcccHHHHHHHHHHcccccEEEcccHHHHHHcccHHHHHHHHcccEEEEccccEEEEEEEEHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEcccccccccccccccccccEEEccccccccccccccccccccccccccEEEEEcccccccccccccccEEEEEccccccEEEEEccccccccccEEEEcccccEEEEccccccccEEccccccEEEEEEcccccEEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEEEccccEEEEEcccccEEEEEEEEEEEcccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEcEEEccccccEEEEEEcccccEEEEEEEEccccEEEEEcccccEEEEcccccccEEEEEcEEcccccEEEEEcccccEEEEEccccccEEEEEcccccEEEEEEcccccEEEEEEcccccccEEEEEccccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEcccccccccEEEEcccccEEEEEEccccEEEEEcccccccccccccccccEEEEEEEEEEEcccccEEEEEEccccEEEEEcccccEEEEccccccEEEccccccEEEccccccEEEEEcEEEcccccEEEEEccccccccEEEEEEcccccEEEEEEcccEEEEEEcccccEEEEEEccccccEEEEccccccEEEEccccccccccEEEEEEcccccEEEEEEccEEEEEEccccEEEEEEccccccEEEEEEccccccEEEEEEccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccccccEEEEEcccccccccccccEEEcccccEEEEEEcccEEEEEcccccEEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccccccccccEEcEEEEEccccccEEEEEEccccEEEEccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccEEEHHHHHHHHHcccHHHHHHHHccccEcccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccHHHHHcccccccccccEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEccccccHHHEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEEEEEEccccccEHHHHHccccHHHHHEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEEEcccccEEEEEEcccccEEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccccccEEEEEEcccccEEEEEccccccEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEccccccEEEEEEccccccccccEEEEEEcccccEEEEEccccccEEccEEEEEEcccccEEEEcccccEEEEEEcccccccEEEEccccccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEccccccccccEEEEEEcccccEEEEEcccEEEEEEcccccEEEEEccccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEccccccccccccccEEEEEcccccEEEEEcccEEEEEEcccccEEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccccccccccccEEEEEEEcccccEEEEEccccEEEEEEccccccEccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MSSLSRELVFLILQFLDEEKFKETVHKLEqdsgfffnmRYFEDMVTNGEWDEVEKYLSGftkvddnrysmKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLEnfrdneqlskygdtkSARGIMLAELKKLIeanplfrdklqfpslknSRLRTLINQSLNWQHqlcknpranpdiktlfvdhtcgqpngarapspvtnplmgavpkagafpplsahgpfqptpaalptslagwmanpspvphpspsagpiaLTAANNAAAilkrprtpptnnsamdyqtadsehvlkrsrpfgisdevnnlSVNILpvaytpqslgqssystddlpKTVVMTLNqgsavksmdfhpVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELgacsmplqaslssdytASVNrvmwspdgtlfgVAYSKHIVHLYTYHGGDELRNHLEIeahvgsvndlafsypnkqlsvvtcgedRVIKVWDAVTGTKQYifeghespvysicphhkeNIQFIFSTATDGKIKAWLYDnlgsrvdydapghsstmmaysadgarlfscgtnkegESYLVEWNESegavkrtyhglgkrsvgvvqfdttknrflaAGDEFMIKFWDMDNVNLLASidadgglqaspcirfnkEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIvkapaigtfgsananvgtslgertapaaamvgmsndsrnftdvkpkiADEAVEKSRIWKlteitepsqcrslrlpdnltAMRVSRLIYTNSGLAILALASNAVHKlwkwprnernstgkattnqapqlwqppsgilmtndisdtnpedavpcfalskndsyvmsasggkislfnmmtfktmttfmppppaatflafhpqdnniiaigmedssiqIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFltipngrtasalADTRVQFHLDQTHLLAVHETQIAiyeapkleclkqfvpreasgpithatyscdsqSIYVAFEEGSVGVLTASTLRLrcrinptaylptnpslrvyplviagnptdpnqfalgltdggvyiiepleaegrwgtsppnengagpsttagvagaeqsqr
Flexible Loop (DISEMBL)
MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSgftkvddnrysMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLltlenfrdneqlskygdtksARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLNWQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQPTPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKrprtpptnnsaMDYQTADSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRtyhglgkrsvgvvqfdtTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAivkapaigtfgsananvgTSLGERTAPAAAMVGmsndsrnftdvkpKIADEaveksriwklteitepsqcrslrlpdNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERnstgkattnqapqlwqppSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINptaylptnpslRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGRWgtsppnengagpsttagvagaeqsqr
Low Complexity Region (SEG)
MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLNWQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQPTPAALPTSLAGWMANPSPVPHPSPSAGPialtaannaaailKRPRTPPTNNSAMDYQTADSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNmmtfktmttfmppppaatflafHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGRWGTSPPNENGAGPSTTAGVAGAEQSQR
Disordered region (IsUnstruct)
******ELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLNWQHQLCKNPRANPDIKTLFVDHTC*************************************************************************************************************ISDEVNNLSVNILPVAYTP*************PKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANAN************************************VEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWP**************************************AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEA******************************
Disordered Region (DISOPRED)
***LSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLNWQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQPTPAAL***************HPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQTADSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGR***************************
Disordered Region (DISEMBL)
MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLNWQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQPTPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQTADSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNE**********QAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGRWGTSPPN********************
Disordered Region (DISPRO)
**SLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLNWQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQPTPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQTADSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGRWGTS***********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLNWQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQPTPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQTADSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGRWGTSPPNENGAGPSTTAGVAGAEQSQR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1134	2.2.26 [Sep-21-2011]
Q27GK7	1135	Topless-related protein 4	yes	no	0.997	0.996	0.746	0.0
Q94AI7	1131	Protein TOPLESS OS=Arabid	no	no	0.989	0.992	0.727	0.0
Q0WV90	1120	Topless-related protein 1	no	no	0.981	0.993	0.721	0.0
Q9LRZ0	1131	Topless-related protein 2	no	no	0.953	0.955	0.625	0.0
Q84JM4	1108	Topless-related protein 3	no	no	0.971	0.994	0.593	0.0
Q00808	1356	Vegetative incompatibilit	yes	no	0.325	0.272	0.265	4e-18
Q8YRI1	1526	Uncharacterized WD repeat	no	no	0.472	0.351	0.211	1e-16
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.360	0.325	0.233	1e-13
Q8YV57	1683	Uncharacterized WD repeat	no	no	0.445	0.300	0.228	5e-13
P49695	742	Probable serine/threonine	no	no	0.208	0.319	0.25	1e-12

>sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2

 Score = 1803 bits (4669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 850/1138 (74%), Positives = 977/1138 (85%), Gaps = 7/1138 (0%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFK+TVH+LE++SGFFFNMRYFED VT GEWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKDTVHRLEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDK+D AKAV+ILVK+LKVFS FNE+LFKEIT LLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKKDHAKAVDILVKELKVFSTFNEELFKEITMLLT 120

Query: 121  LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
            L NFR+NEQLSKYGDTKSARGIML ELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN
Sbjct: 121  LTNFRENEQLSKYGDTKSARGIMLGELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQ 240
            WQHQLCKNPR NPDIKTLFVDHTCG PNGA  PSP TN LMG+VPK G FPPL AHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHTCGHPNGAHTPSPTTNHLMGSVPKVGGFPPLGAHGPFQ 240

Query: 241  PTPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKR--PRTPPTNNSAMDYQ 298
            PTPA L TSLAGWM NPS V HP+ SAGPI L A N+A ++LKR  PR+PPTN+ +MDYQ
Sbjct: 241  PTPAPLTTSLAGWMPNPS-VQHPTVSAGPIGLGAPNSAVSMLKRERPRSPPTNSLSMDYQ 299

Query: 299  TADSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSA 358
            TADSE VLKR RPFGISD VNNL VN+LPV Y  QS   ++YSTDDLPK V   L+QGSA
Sbjct: 300  TADSESVLKRPRPFGISDGVNNLPVNVLPVTYPGQSHAHATYSTDDLPKNVSRILSQGSA 359

Query: 359  VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT 418
            +KSMDFHPVQQ +L+VGTN+GD+ +WEVGSRE++  +SFKVW+L  C++ LQASL+S+YT
Sbjct: 360  IKSMDFHPVQQTMLLVGTNLGDIAIWEVGSREKLVSRSFKVWDLATCTVNLQASLASEYT 419

Query: 419  ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQL 478
            A+VNRV+WSPDG L GVAYSKHIVH+Y+YHGG++LRNHLEI+AH G+VNDLAFS PN+QL
Sbjct: 420  AAVNRVVWSPDGGLLGVAYSKHIVHIYSYHGGEDLRNHLEIDAHAGNVNDLAFSQPNQQL 479

Query: 479  SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLY 538
             VVTCGED+ IKVWDAVTG K + FEGHE+PVYS+CPH KENIQFIFSTA DGKIKAWLY
Sbjct: 480  CVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPHQKENIQFIFSTAVDGKIKAWLY 539

Query: 539  DNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK 598
            DN+GSRVDYDAPG S T MAY ADG RLFSCGT+KEGES++VEWNESEGAVKRTY GLGK
Sbjct: 540  DNMGSRVDYDAPGRSCTSMAYCADGTRLFSCGTSKEGESFIVEWNESEGAVKRTYLGLGK 599

Query: 599  RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLA 658
            RSVGVVQFDT KN+FL AGDEF +KFWDMD+V+LL+S  A+GGL +SPC+R NKEG LLA
Sbjct: 600  RSVGVVQFDTMKNKFLVAGDEFQVKFWDMDSVDLLSSTAAEGGLPSSPCLRINKEGTLLA 659

Query: 659  VSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSL-- 716
            VST DNGIKILANA+G R+L ++ +R  D+SR    ++ K P +GTFG+ N++ G SL  
Sbjct: 660  VSTTDNGIKILANAEGSRILHSMANRGLDSSRAPPGSVAKGPIVGTFGTPNSSTGMSLSM 719

Query: 717  GERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTA 776
            GER+ P A++ G++ D+R+  DVKP+IAD+A EKS+ WKLTEI+E SQ R+LRLPD L  
Sbjct: 720  GERSGPVASVTGLNGDNRSLPDVKPRIADDA-EKSKTWKLTEISERSQLRTLRLPDTLLP 778

Query: 777  MRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTND 836
             RV +LIYTNSG AILALA NA HKLWKW ++ERN  GKA +N  PQLWQP SG+LMTND
Sbjct: 779  ARVVKLIYTNSGGAILALAENAAHKLWKWQKSERNLLGKANSNVPPQLWQPSSGVLMTND 838

Query: 837  ISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQD 896
              + N ED VPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFM PPPAAT LAFHPQD
Sbjct: 839  TREGNKEDVVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMAPPPAATSLAFHPQD 898

Query: 897  NNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWST 956
            NNIIAIGM+DSSIQIYNVRVDEVK+KLKGHQKR+TGLAFSN LNVLVSSGADSQLCVWS 
Sbjct: 899  NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTGLAFSNVLNVLVSSGADSQLCVWSM 958

Query: 957  DGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVP 1016
            DGWEKQASK + IP+G + + LA TRVQFH DQ H+L VH +Q+AIYEAPKLE +KQ++P
Sbjct: 959  DGWEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHVLVVHASQLAIYEAPKLENMKQWIP 1018

Query: 1017 REASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLV 1076
            +E+SG +T A YSCDSQSIY AF++GSV +LTA+TL+L+CRI P +YLP+NPS RVYP  
Sbjct: 1019 KESSGSVTDAVYSCDSQSIYAAFDDGSVSILTATTLQLKCRIGPNSYLPSNPSSRVYPAT 1078

Query: 1077 IAGNPTDPNQFALGLTDGGVYIIEPLEAEGRWGTSPPNENGAGPSTTAGVAGAEQSQR 1134
            +A +P++PNQFA+GLTDGGV++IEP   EG+WG S P ENGAGPS ++   G++Q  R
Sbjct: 1079 VAAHPSEPNQFAVGLTDGGVHVIEPPGPEGKWGISAPPENGAGPSVSSA-PGSDQQPR 1135

Transcriptional corepressor. Negative regulator of jasmonate responses.
Arabidopsis thaliana (taxid: 3702)

>sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1

 Score = 1741 bits (4509), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 832/1143 (72%), Positives = 966/1143 (84%), Gaps = 21/1143 (1%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQ+SGFFFNM+YFED V NG WDEVEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDK DR KAV+ILVKDLKVFS FNE+LFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
            LENFR+NEQLSKYGDTKSAR IML ELKKLIEANPLFRDKLQFP+L+NSRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQ 240
            WQHQLCKNPR NPDIKTLFVDH+CG PNGARAPSPV NPL+G +PKAG FPPL AHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPFQ 240

Query: 241  PTPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQTA 300
            PT + +PT LAGWM++PS VPHP+ SAG IAL   +  AA LK PRTPPTN S +DY +A
Sbjct: 241  PTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIPAA-LKHPRTPPTNAS-LDYPSA 298

Query: 301  DSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSS--YSTDDLPKTVVMTLNQGSA 358
            DSEHV KR+RP GISDEVN L VN+LP++++ Q+ G S    + DDLPKTV  TL+QGS+
Sbjct: 299  DSEHVSKRTRPMGISDEVN-LGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGSS 357

Query: 359  VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT 418
              SMDFHP++Q LL+VGTN+GD+ LWEVGSRER+  K+FKVW+L  CSMPLQA+L  +  
Sbjct: 358  PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417

Query: 419  ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQL 478
             SVNRV+WSPDG+LFGVAYS+HIV LY+YHGG+++R HLEI+AHVG VND++FS PNKQL
Sbjct: 418  VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQL 477

Query: 479  SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLY 538
             V+TCG+D+ IKVWDA TG K++ FEGHE+PVYS+CPH+KENIQFIFSTA DGKIKAWLY
Sbjct: 478  CVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLY 537

Query: 539  DNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK 598
            DN+GSRVDYDAPG   T MAYSADG RLFSCGT+K+GES++VEWNESEGAVKRTY G  K
Sbjct: 538  DNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597

Query: 599  RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLA 658
            RS+GVVQFDTTKNR+LAAGD+F IKFWDMD V LL +ID DGGLQASP IRFNKEG LLA
Sbjct: 598  RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLLA 657

Query: 659  VSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLG- 717
            VS N+N IKI+AN+DG+RLL T E+ + ++S+         PAI +  +A A   TS G 
Sbjct: 658  VSGNENVIKIMANSDGLRLLHTFENISSESSK---------PAINSIAAAAAAAATSAGH 708

Query: 718  -ERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTA 776
             +R+A   ++ GM+ DSRN  DVKP I +E+ +KS+IWKLTE++EPSQCRSLRLP+NL  
Sbjct: 709  ADRSANVVSIQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLRV 768

Query: 777  MRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTND 836
             ++SRLI+TNSG AILALASNA+H LWKW RNERN+TGKAT +  PQ WQP SGILMTND
Sbjct: 769  AKISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGILMTND 828

Query: 837  ISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQD 896
            +++TNPE+AVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHPQD
Sbjct: 829  VAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQD 888

Query: 897  NNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWST 956
            NNIIAIGM+DS+IQIYNVRVDEVK+KLKGH KRITGLAFSN LNVLVSSGAD+QLCVW+T
Sbjct: 889  NNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNT 948

Query: 957  DGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVP 1016
            DGWEKQ SK L +P GR  SA +DTRVQFH DQ H L VHETQ+AIYE  KLEC+KQ+  
Sbjct: 949  DGWEKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQWAV 1008

Query: 1017 REASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPS-LRVYPL 1075
            RE+  PITHAT+SCDSQ +Y +F + +V V +++ LRLRCR+NP+AYLP + S   V+PL
Sbjct: 1009 RESLAPITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSNVHPL 1068

Query: 1076 VIAGNPTDPNQFALGLTDGGVYIIEPLEAEGRWGTSPPNEN----GAGPSTTAGVAGAEQ 1131
            VIA +P +PN FA+GL+DGGV+I EPLE+EG+WG +PP EN    GA  + + G + ++Q
Sbjct: 1069 VIAAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGASASDQ 1128

Query: 1132 SQR 1134
             QR
Sbjct: 1129 PQR 1131

Transcriptional corepressor. May repress the expression of root-promoting genes in the top half of the embryo to allow proper differentiation of the shoot pole during the transition stage of embryogenesis. Regulates the expression of PLT1 and PLT2. Negative regulator of jasmonate responses. Negative regulator of auxin responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3

 Score = 1734 bits (4491), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 823/1141 (72%), Positives = 961/1141 (84%), Gaps = 28/1141 (2%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQ+SGFFFNM+YFED V NG WDEVEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALD+ DR KAV+ILVKDLKVFS FNE+LFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
            LENFR+NEQLSKYGDTKSAR IML ELKKLIEANPLFRDKLQFP+L+ SRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQ 240
            WQHQLCKNPR NPDIKTLFVDH+C  PN ARAPSPV NPL+G++PKA  FPPL AHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPFQ 240

Query: 241  PTPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQTA 300
            PTP+ +PT LAGWM++PS VPHP+ S GPIAL A +  AA LK PRTPP+N SA+DY + 
Sbjct: 241  PTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSIQAA-LKHPRTPPSN-SAVDYPSG 298

Query: 301  DSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLG--QSSYSTDDLPKTVVMTLNQGSA 358
            DS+HV KR+RP GISDEV+ L VN+LP+ +  Q+ G  Q+  + DDLPKTV  TL+QGS+
Sbjct: 299  DSDHVSKRTRPMGISDEVS-LGVNMLPMTFPGQAHGHNQTFKAPDDLPKTVARTLSQGSS 357

Query: 359  VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT 418
              SMDFHP++Q LL+VGTN+GD+ LWEVGSRER+  K+FKVW+L  CSMPLQA+L  +  
Sbjct: 358  PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417

Query: 419  ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQL 478
             SVNRV+WSPDG+LFGVAYS+HIV LY+YHGG+++R HLEI+AHVG VND+AFS PNKQL
Sbjct: 418  VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQL 477

Query: 479  SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLY 538
             V TCG+D+ IKVWDA TG K+Y FEGHE+PVYSICPH+KENIQFIFSTA DGKIKAWLY
Sbjct: 478  CVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLY 537

Query: 539  DNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK 598
            DN+GSRVDY+APG   T MAYSADG RLFSCGT+K+GES++VEWNESEGAVKRTY G  K
Sbjct: 538  DNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597

Query: 599  RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLA 658
            RS+GVVQFDTTKNR+LAAGD+F IKFWDMD + LL +IDADGGLQASP IRFNKEG LLA
Sbjct: 598  RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSLLA 657

Query: 659  VSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGE 718
            VS NDN IK++AN+DG+RLL TVE+ + ++S+         PAI +           + E
Sbjct: 658  VSANDNMIKVMANSDGLRLLHTVENLSSESSK---------PAINSI---------PMVE 699

Query: 719  RTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMR 778
            R A   ++ GM+ DSRN  DVKP I +E+ +KS++WKLTE+ EPSQCRSLRLP+N+   +
Sbjct: 700  RPASVVSIPGMNGDSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENMRVTK 759

Query: 779  VSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDIS 838
            +SRLI+TNSG AILALASNA+H LWKW RN+RN+TGKAT +  PQ WQP SGILMTND++
Sbjct: 760  ISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGILMTNDVA 819

Query: 839  DTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN 898
            +TNPE+AVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHPQDNN
Sbjct: 820  ETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 879

Query: 899  IIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDG 958
            IIAIGM+DS+IQIYNVRVDEVK+KLKGH KRITGLAFSN LNVLVSSGAD+QLCVW+TDG
Sbjct: 880  IIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDG 939

Query: 959  WEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPRE 1018
            WEKQ SK L IP GR+ S+L+DTRVQFH DQ H L VHETQ+AIYE  KLEC+KQ+  RE
Sbjct: 940  WEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQWPVRE 999

Query: 1019 ASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPS-LRVYPLVI 1077
            ++ PITHAT+SCDSQ IY +F + ++ V +++ LRLRCR+NP+AYLP + S   V+PLVI
Sbjct: 1000 SAAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSNSNVHPLVI 1059

Query: 1078 AGNPTDPNQFALGLTDGGVYIIEPLEAEGRWGTSPPNENGAGPSTTA----GVAGAEQSQ 1133
            A +P + N FA+GL+DGGV+I EPLE+EG+WG +PP ENG+  + TA    G + ++Q Q
Sbjct: 1060 AAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPENGSASAVTATPSVGASASDQPQ 1119

Query: 1134 R 1134
            R
Sbjct: 1120 R 1120

Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2

 Score = 1412 bits (3655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 706/1128 (62%), Positives = 851/1128 (75%), Gaps = 47/1128 (4%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKE+VHKLEQ+SGFFFN++YFE+    GEWDEVEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALD+ DRAKAVEIL KDLKVF+ FNE+L+KEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120

Query: 121  LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
            LENFR+NEQLSKYGDTKSAR IM  ELKKLIEANPLFR+KL FPS K SRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180

Query: 181  WQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAH-GPF 239
            WQHQLCKNPR NPDIKTLF+DH+C   NGARA +PV  P+  AV +   F PL  H GPF
Sbjct: 181  WQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPV-AAVARPSNFVPLGVHGGPF 239

Query: 240  QP--TPAALPTSLAGWMANPSP---VPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSA 294
            Q    PA    +LAGWMANP+P   VP    +A P  +  +      LK PR P  +   
Sbjct: 240  QSNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQ--VNELKHPRAPSNSLGL 297

Query: 295  MDYQTADSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLN 354
            MDYQ+AD E ++KR R    S+EV        P    P +      S DDLP+ VV T+ 
Sbjct: 298  MDYQSADHEQLMKRLRSAQTSNEVT------YPAHSHPPA------SLDDLPRNVVSTIR 345

Query: 355  QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLS 414
            QGS V SMDFHP    LL VG + G+V LWEVGSRE++  + FK+W + ACS+  Q S+ 
Sbjct: 346  QGSVVISMDFHPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIV 405

Query: 415  SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP 474
             + + SV RV WSPDG L GV+++KH++H+Y Y G D LR HLEI+AHVG VNDLAF++P
Sbjct: 406  KEPSISVTRVAWSPDGNLLGVSFTKHLIHVYAYQGSD-LRQHLEIDAHVGCVNDLAFAHP 464

Query: 475  NKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIK 534
            NKQ+ VVTCG+D++IKVWD ++G K + FEGHE+PVYSICPH KENIQFIFSTA DGKIK
Sbjct: 465  NKQMCVVTCGDDKLIKVWD-LSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIK 523

Query: 535  AWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
            AWLYDN+GSRVDYDAPG   T M YSADG+RLFSCGT+KEG+S+LVEWNESEGA+KRTY 
Sbjct: 524  AWLYDNVGSRVDYDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYL 583

Query: 595  GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654
            G  K+S GVVQFDTT+NRFLA G++  IKFW+MDN NLL  ++A+GGL   P +RFNK+G
Sbjct: 584  GFRKKSAGVVQFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDG 643

Query: 655  ILLAVSTNDNGIKILANADGIRLLRTVESRTFDAS------RVASAAIVK--APAIGTFG 706
             LLAV+T DNG KILAN DG+R LR  E+R+F+AS      +V+++A+    +PAIG   
Sbjct: 644  NLLAVTTADNGFKILANTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSISPAIGKIE 703

Query: 707  SANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCR 766
              +A      G    P     G+   SR  T  KP+  D +V+KS+  +LTEI +P+QCR
Sbjct: 704  HMDA------GSPARPTPIPNGIEAMSR--TMEKPRNLD-SVDKSKPLELTEIVDPTQCR 754

Query: 767  SLRLPDNLTAM-RVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLW 825
             + +PD+  ++ +V+RL+YTNSG+ +LAL SN V +LWKW RNE+N TGKAT +  PQ W
Sbjct: 755  QVTMPDSKDSVSKVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHW 814

Query: 826  QPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPP 885
            QP SG+LM ND+ + NPE +VPC ALSKNDSYVMSA GGK+SLFNMMTFK MTTFMPPPP
Sbjct: 815  QPNSGLLMANDVPE-NPEGSVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPP 873

Query: 886  AATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSS 945
            A+TFLAFHPQDNNIIAIGMEDSSI IYNVRVDEVKTKLKGHQK ITGLAFS  LN+LVSS
Sbjct: 874  ASTFLAFHPQDNNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSS 933

Query: 946  GADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEA 1005
            GAD+QL  W+ D WEK+ S  + +P G+  + + DTRVQFH DQ  LL  HETQ+AIY+A
Sbjct: 934  GADAQLFFWTADSWEKKKSSAIQLPPGK--APVGDTRVQFHNDQIQLLVSHETQLAIYDA 991

Query: 1006 PKLECLKQFVPREA-SGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYL 1064
             K+EC+ ++VP+EA S PIT A+YSC+SQ +Y +F +G++ V  A +LRLRCRI P+AY+
Sbjct: 992  SKMECIHKWVPQEALSSPITSASYSCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAYM 1051

Query: 1065 --PTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGRWGT 1110
              PT  S  ++P VI  +P +PNQ A+GL+DG V +IEP E   RWG 
Sbjct: 1052 PQPTPNSAPIFPQVITAHPQEPNQLAVGLSDGSVKVIEPSELSRRWGV 1099

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1

 Score = 1371 bits (3549), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 677/1140 (59%), Positives = 841/1140 (73%), Gaps = 38/1140 (3%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
            MSSLSRELVFLILQFL+EEKFKE+VH+LE++SGFFFN +YF++ V  GEWD+VE YLSGF
Sbjct: 1    MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNTKYFDEKVLAGEWDDVETYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALD++++AKAVEILV+DL+VFS FNE+L+KEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDRQEKAKAVEILVQDLRVFSTFNEELYKEITQLLT 120

Query: 121  LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
            L+NFR+NEQLSKYGDTK+ARGIML ELKKLIEANPLFRDKL FP+L++SRLRTLINQSLN
Sbjct: 121  LQNFRENEQLSKYGDTKTARGIMLGELKKLIEANPLFRDKLMFPTLRSSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAH-GPF 239
            WQHQLCKNPR NPDIKTLF DHTC  PNG  APS V  P+   + K  A+P L  H    
Sbjct: 181  WQHQLCKNPRPNPDIKTLFTDHTCTLPNGPLAPSAVNQPVT-TLTKPAAYPSLGPHVPFP 239

Query: 240  QPTPAALPTSLAGWMANPSPVPHPSPS-AGPIALTAANNAAAILKRPRTPPTNNSAMDYQ 298
                AA   +LA WMA  S       +   P  +    N  +ILKRPRTPP     +DYQ
Sbjct: 240  PGPAAANAGALASWMAAASGASAVQAAVVTPALMPQPQNQMSILKRPRTPPATPGIVDYQ 299

Query: 299  TADSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSA 358
              D E ++KR RP    +EV             P    Q+ +S +DLP    + L+QGS 
Sbjct: 300  NPDHE-LMKRLRPAPSVEEVT-----------YPAPRQQAPWSLEDLPTKAALALHQGST 347

Query: 359  VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT 418
            V SM+F+P+Q  LL+VG+  G++ LWE+ +RER+  + FK+W++  CS   QA ++ +  
Sbjct: 348  VTSMEFYPMQNTLLLVGSATGEITLWELAARERLVSRPFKIWDMSNCSHQFQALIAKETP 407

Query: 419  ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQL 478
             SV RV WSPDG   GVA++KH++ LY + G ++LR H EI+AHVG+VNDLAF+ PN+QL
Sbjct: 408  ISVTRVAWSPDGNFIGVAFTKHLIQLYAFSGPNDLRQHTEIDAHVGAVNDLAFANPNRQL 467

Query: 479  SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLY 538
             V+TCG+D++IKVWD V+G K + FEGH++PVYSICPH+KENIQFIFSTA DGKIKAWLY
Sbjct: 468  CVITCGDDKLIKVWD-VSGRKHFTFEGHDAPVYSICPHYKENIQFIFSTAIDGKIKAWLY 526

Query: 539  DNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK 598
            DNLGSRVDYDAPG   T M YSADG RLFSCGT+K+G+S+LVEWNESEG++KRTY    K
Sbjct: 527  DNLGSRVDYDAPGKWCTRMLYSADGTRLFSCGTSKDGDSFLVEWNESEGSIKRTYKEFQK 586

Query: 599  RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLA 658
            +  GVVQFDT+KN FLA G++  IKFWDM+N+N+L S DA+GGL A P +RFNK+G LLA
Sbjct: 587  KLAGVVQFDTSKNHFLAVGEDGQIKFWDMNNINVLTSTDAEGGLPALPHLRFNKDGNLLA 646

Query: 659  VSTNDNGIKILANADGIRLLRTVESRTFDASR--VASAAIVKAPAIGTFGSANANVGTSL 716
            V+T DNG KILAN  G R LR +E+   +  R  V   A+  AP      S N  V    
Sbjct: 647  VTTADNGFKILANPAGFRSLRAMETPASETMRTPVDFKAVPGAPV----ASVNCKV---- 698

Query: 717  GERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNL-T 775
             ER +P        +   N  D      D++ +K + W+L EI +PSQC    LPD   +
Sbjct: 699  -ERGSPV-----RHSQMLNGVDPSKSRIDDSTDKPKSWQLAEILDPSQCFQATLPDTAGS 752

Query: 776  AMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTN 835
            + +V +L+YTNSG  ILAL SN + +LWKW  NE+N +GKAT    PQ WQP SG+LMTN
Sbjct: 753  STKVVQLLYTNSGAGILALGSNGIQRLWKWVPNEQNPSGKATATVVPQHWQPNSGLLMTN 812

Query: 836  DISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQ 895
            D+S  N E+A PC ALSKNDSYVMSA+GGK+SLFNMMTFK MTTFMPPPPA+TFLAFHPQ
Sbjct: 813  DVSGVNLENAAPCIALSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQ 872

Query: 896  DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 955
            DNN+IAIGMEDS+I IYNVRVDEVK+KLKGHQKRITGLAFS  LN+LVSSGAD+Q+C WS
Sbjct: 873  DNNVIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTALNILVSSGADAQICFWS 932

Query: 956  TDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFV 1015
             D WEK+ S  + +P G+ A+   DTRVQFH+DQ  +L VHETQ+A+++A K+EC++Q++
Sbjct: 933  IDTWEKRKSVAIQMPAGKAAN--GDTRVQFHVDQLRILVVHETQLAVFDASKMECIRQWI 990

Query: 1016 PREA-SGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYP 1074
            P+++ S PI+ A Y+C+SQ IY  F +G++GV  A +LRLRCRI+P+AYLP   +  + P
Sbjct: 991  PQDSLSAPISSAVYACNSQLIYTTFRDGNIGVFDADSLRLRCRISPSAYLPQG-NQGLSP 1049

Query: 1075 LVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGRWGTSPPNENGAGPSTTAGVAGAEQSQR 1134
            LV+A +P DPNQFA+GL DG V ++EP E EG+WG  PP+E    PSTT+     EQ QR
Sbjct: 1050 LVVAAHPQDPNQFAVGLNDGSVKMMEPTEGEGKWGMIPPSEAINSPSTTSN-QTPEQLQR 1108

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 94.4 bits (233), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 114/430 (26%), Positives = 175/430 (40%), Gaps = 61/430 (14%)

Query: 325  ILPVAYTPQSLGQSSYSTDDLPK-------TVVMTL-NQGSAVKSMDFHPVQQILLVVGT 376
            +  VA++P     +S S D   K       T   TL   GS+V S+ F P  Q    V +
Sbjct: 928  VQSVAFSPDGQRVASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQ---RVAS 984

Query: 377  NMGDVMLWEVGSRERIAVKSFKVWEL--GACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434
              GD              K+ K+W+   G C+  L+      +  SV  V +SPDG    
Sbjct: 985  GSGD--------------KTIKIWDTASGTCTQTLEG-----HGGSVWSVAFSPDGQRVA 1025

Query: 435  VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDA 494
                   + ++    G   +    +E H G V  + FS P+ Q  V +  +D  IK+WDA
Sbjct: 1026 SGSDDKTIKIWDTASGTCTQT---LEGHGGWVQSVVFS-PDGQ-RVASGSDDHTIKIWDA 1080

Query: 495  VTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSS 554
            V+GT     EGH   V+S+      + Q + S + DG IK W  D           GH  
Sbjct: 1081 VSGTCTQTLEGHGDSVWSVA--FSPDGQRVASGSIDGTIKIW--DAASGTCTQTLEGHGG 1136

Query: 555  TM--MAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNR 612
             +  +A+S DG R+ S   +      +  W+ + G   +T  G G   V  V F     R
Sbjct: 1137 WVHSVAFSPDGQRVASGSID----GTIKIWDAASGTCTQTLEGHGGW-VQSVAFSPDGQR 1191

Query: 613  FLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 672
              +   +  IK WD  +     +++  GG   S  + F+ +G  +A  ++DN IKI   A
Sbjct: 1192 VASGSSDKTIKIWDTASGTCTQTLEGHGGWVQS--VAFSPDGQRVASGSSDNTIKIWDTA 1249

Query: 673  DG-----IRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMV 727
             G     + +  T    +FD +     A +    IG    A A +  SL + ++P     
Sbjct: 1250 SGTCTQTLNVGSTATCLSFDYTN----AYINTN-IGRIQIATATM-ESLNQLSSPVCYSY 1303

Query: 728  GMSNDSRNFT 737
            G+  D R  T
Sbjct: 1304 GLGQDHRWIT 1313

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 139/657 (21%), Positives = 259/657 (39%), Gaps = 121/657 (18%)

Query: 325  ILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLW 384
            I+   +T  SL   +++  +L  +V   +    +V ++ F P  + L   G + G V  W
Sbjct: 835  IIGADFTNTSLRCVNFTEANLAYSVFTKIL--GSVLTVAFSPDGK-LFATGDSGGIVRFW 891

Query: 385  EVGS-RERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVH 443
            E  + +E +  K    W                    VN V +S DG +         V 
Sbjct: 892  EAATGKELLTCKGHNSW--------------------VNSVGFSQDGKMLASGSDDQTVR 931

Query: 444  LYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF 503
            L+    G  L+     + H   V  + FS PN  L + +   D+ +++WD  +G   YIF
Sbjct: 932  LWDISSGQCLKT---FKGHTSRVRSVVFS-PNS-LMLASGSSDQTVRLWDISSGECLYIF 986

Query: 504  EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTM--MAYSA 561
            +GH   VYS+  +   ++  + + + D  ++ W  D   S+  Y   GH+S +  + +S+
Sbjct: 987  QGHTGWVYSVAFNLDGSM--LATGSGDQTVRLW--DISSSQCFYIFQGHTSCVRSVVFSS 1042

Query: 562  DGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFM 621
            DGA L S G++ +       W+ S G    T  G     V  V F        + GD+ +
Sbjct: 1043 DGAMLAS-GSDDQTVRL---WDISSGNCLYTLQG-HTSCVRSVVFSPDGAMLASGGDDQI 1097

Query: 622  IKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTV 681
            ++ WD+ + N L ++   G       + F+  G+ LA  ++D  ++ L +    + L T+
Sbjct: 1098 VRLWDISSGNCLYTL--QGYTSWVRFLVFSPNGVTLANGSSDQIVR-LWDISSKKCLYTL 1154

Query: 682  ESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKP 741
            +  T   + VA            F    A + +  G++T                     
Sbjct: 1155 QGHTNWVNAVA------------FSPDGATLASGSGDQTV-------------------- 1182

Query: 742  KIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHK 801
                      R+W ++     S+C  L +    T+  V+ +++   G  + + +S+   +
Sbjct: 1183 ----------RLWDIS----SSKC--LYILQGHTSW-VNSVVFNPDGSTLASGSSDQTVR 1225

Query: 802  LWKWPRNERNSTGKATTNQAPQLWQ-----PPSGILMTNDISDTNPE------------- 843
            LW     E NS+    T Q    W       P G ++ +  SD                 
Sbjct: 1226 LW-----EINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTF 1280

Query: 844  ----DAVPCFALSKNDSYVMSASGGK-ISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN 898
                + V   A + + S + S SG + + L+ + + K + TF       + + F P D  
Sbjct: 1281 QGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSP-DGT 1339

Query: 899  IIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 955
            ++A G +D +++++++   E      GH   +  + FS    +L S   D  + +WS
Sbjct: 1340 MLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIFSPDGAILASGSGDQTVRLWS 1396

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 107/459 (23%), Positives = 184/459 (40%), Gaps = 50/459 (10%)

Query: 522  QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSS--TMMAYSADGARLFSCGTNKEGESYL 579
            Q + +  TD  ++ W   +   ++     GHS+    + +S DG  L SCG ++     +
Sbjct: 655  QLLATCDTDCHVRVWEVKS--GKLLLICRGHSNWVRFVVFSPDGEILASCGADEN----V 708

Query: 580  VEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD 639
              W+  +G   +T  G  +  V  V F        +A  +  IK WD+ +   L ++   
Sbjct: 709  KLWSVRDGVCIKTLTG-HEHEVFSVAFHPDGETLASASGDKTIKLWDIQDGTCLQTLT-- 765

Query: 640  GGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKA 699
            G      C+ F+ +G  LA S  D+ IK+   + G + LRT++S T     VA +A  + 
Sbjct: 766  GHTDWVRCVAFSPDGNTLASSAADHTIKLWDVSQG-KCLRTLKSHTGWVRSVAFSADGQT 824

Query: 700  PAIG----TFGSANANVGTSLGERTAPAAAMVGMSNDSRNFT---DVKPKIADEAVEKSR 752
             A G    T    N + G  L          +G +N   +     D K  ++       +
Sbjct: 825  LASGSGDRTIKIWNYHTGECL-------KTYIGHTNSVYSIAYSPDSKILVSGSGDRTIK 877

Query: 753  IWKL-TEITEPSQ-------CRSLRLPDNLTAMRVS-----RLIYTNSGLAILALASNAV 799
            +W   T I   +        C     PD  T   VS     RL    +G  + A   N  
Sbjct: 878  LWDCQTHICIKTLHGHTNEVCSVAFSPDGQTLACVSLDQSVRLWNCRTGQCLKAWYGNTD 937

Query: 800  HKLWKWPRN---ERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDS 856
               W  P     +R      + ++  +LW   +G  +++    T   D +   A S +  
Sbjct: 938  ---WALPVAFSPDRQILASGSNDKTVKLWDWQTGKYISSLEGHT---DFIYGIAFSPDSQ 991

Query: 857  YVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVR 915
             + SAS    + L+N+ T +     +        + FHPQ   IIA G  D +++++N+ 
Sbjct: 992  TLASASTDSSVRLWNISTGQCFQILLEHTDWVYAVVFHPQ-GKIIATGSADCTVKLWNIS 1050

Query: 916  VDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 954
              +    L  H  +I G+A+S    +L S+ AD  + +W
Sbjct: 1051 TGQCLKTLSEHSDKILGMAWSPDGQLLASASADQSVRLW 1089

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 134/586 (22%), Positives = 236/586 (40%), Gaps = 81/586 (13%)

Query: 420  SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLS 479
            +V  V +SPDG       S   + L+    G  L+    I  H  +VN++ FS   K L+
Sbjct: 1115 AVYSVSFSPDGQTIASGGSDKTIKLWQTSDGTLLKT---ITGHEQTVNNVYFSPDGKNLA 1171

Query: 480  VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD 539
              +   D  IK+WD  +G       GH + V ++      + Q I + + D  +K W   
Sbjct: 1172 --SASSDHSIKLWDTTSGQLLMTLTGHSAGVITV--RFSPDGQTIAAGSEDKTVKLWHRQ 1227

Query: 540  NLGSRVDYDAPGHSSTM--MAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG 597
            +   ++     GH   +  +++S DG  L S   +K     +  W  ++G + +T  G  
Sbjct: 1228 D--GKLLKTLNGHQDWVNSLSFSPDGKTLASASADKT----IKLWRIADGKLVKTLKG-H 1280

Query: 598  KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILL 657
              SV  V F +      +A  +  IK W+   + L       GG+ A   + F  +  ++
Sbjct: 1281 NDSVWDVNFSSDGKAIASASRDNTIKLWNRHGIELETFTGHSGGVYA---VNFLPDSNII 1337

Query: 658  AVSTNDNGIK-----------ILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFG 706
            A ++ DN I+           +LA   G+  +    S   D S +A+A      A G   
Sbjct: 1338 ASASLDNTIRLWQRPLISPLEVLAGNSGVYAV----SFLHDGSIIATAG-----ADGNIQ 1388

Query: 707  SANANVGTSLGERTAPA-AAMVGMSNDSRNFTDVKPKIADEAVEKS-RIWKLTEITEPSQ 764
              ++  G+ L  +T P   A+ G+S     FT     IA    +K+ +IW+   + +   
Sbjct: 1389 LWHSQDGSLL--KTLPGNKAIYGIS-----FTPQGDLIASANADKTVKIWR---VRDGKA 1438

Query: 765  CRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLW-----KWPRNERNST------ 813
             ++L   DN     V+++ ++  G  + + + +   KLW     K+ +  +  T      
Sbjct: 1439 LKTLIGHDN----EVNKVNFSPDGKTLASASRDNTVKLWNVSDGKFKKTLKGHTDEVFWV 1494

Query: 814  -----GK----ATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGG 864
                 GK    A+ ++  +LW   SG L+    S     D V     + + S + S S  
Sbjct: 1495 SFSPDGKIIASASADKTIRLWDSFSGNLIK---SLPAHNDLVYSVNFNPDGSMLASTSAD 1551

Query: 865  K-ISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKL 923
            K + L+       + TF          +F P D   IA   ED +++I+ +    + T L
Sbjct: 1552 KTVKLWRSHDGHLLHTFSGHSNVVYSSSFSP-DGRYIASASEDKTVKIWQID-GHLLTTL 1609

Query: 924  KGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTI 969
              HQ  +    FS     L+S   D+   +W  D  + + S+  T+
Sbjct: 1610 PQHQAGVMSAIFSPDGKTLISGSLDTTTKIWRFDSQQAKTSQMNTL 1655

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 105/252 (41%), Gaps = 15/252 (5%)

Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
           +T  V  V +SPDG L         V L+     +E       E H   V D+AFS P+ 
Sbjct: 500 HTDWVRAVAFSPDGALLASGSDDATVRLWDVAAAEE---RAVFEGHTHYVLDIAFS-PDG 555

Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
            + V +   D   ++W+  TGT+  + +GH   VY++      +   + S + DG I+ W
Sbjct: 556 SM-VASGSRDGTARLWNVATGTEHAVLKGHTDYVYAVA--FSPDGSMVASGSRDGTIRLW 612

Query: 537 LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL 596
                  R    AP  +   +A+S DG+ L         +S +  W+ + G    T+ G 
Sbjct: 613 DVATGKERDVLQAPAENVVSLAFSPDGSMLVHG-----SDSTVHLWDVASGEALHTFEG- 666

Query: 597 GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGIL 656
               V  V F        +  D+  I+ WD+       ++  +G  +    + F+ EG  
Sbjct: 667 HTDWVRAVAFSPDGALLASGSDDRTIRLWDVAAQEEHTTL--EGHTEPVHSVAFHPEGTT 724

Query: 657 LAVSTNDNGIKI 668
           LA ++ D  I+I
Sbjct: 725 LASASEDGTIRI 736

May play a regulatory role during the complex growth cycle and in secondary metabolite production.

Thermomonospora curvata (taxid: 2020)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1134
359484207	1133	PREDICTED: topless-related protein 4-lik	0.999	1.0	0.873	0.0
356546114	1232	PREDICTED: topless-related protein 4-lik	0.998	0.918	0.870	0.0
449443059	1134	PREDICTED: topless-related protein 4-lik	0.999	0.999	0.867	0.0
356562983	1134	PREDICTED: topless-related protein 4-lik	0.998	0.998	0.867	0.0
359484209	1123	PREDICTED: topless-related protein 4-lik	0.990	1.0	0.865	0.0
359484211	1123	PREDICTED: topless-related protein 4-lik	0.990	1.0	0.865	0.0
357478183	1132	WD repeat-containing protein [Medicago t	0.996	0.998	0.848	0.0
255572487	1134	WD-repeat protein, putative [Ricinus com	0.998	0.998	0.850	0.0
224087108	1132	predicted protein [Populus trichocarpa]	0.997	0.999	0.846	0.0
224142595	1126	predicted protein [Populus trichocarpa]	0.992	0.999	0.842	0.0

>gi|359484207|ref|XP_002285341.2| PREDICTED: topless-related protein 4-like isoform 1 [Vitis vinifera] gi|297738983|emb|CBI28228.3| unnamed protein product [Vitis vinifera]

 Score = 2095 bits (5429), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 991/1134 (87%), Positives = 1065/1134 (93%), Gaps = 1/1134 (0%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQ+SGFFFNMRYFE+ VTNGEWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMRYFEETVTNGEWDDVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNE+LFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEELFKEITQLLT 120

Query: 121  LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
            LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN
Sbjct: 121  LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQ 240
            WQHQLCKNP+ANPDIKTLFVDHTCGQPNGARAPSPVTNPLMG VPKAG FPPLSAHGPFQ
Sbjct: 181  WQHQLCKNPKANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGTVPKAGGFPPLSAHGPFQ 240

Query: 241  PTPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQTA 300
            P PA LPTSLAGWMANPSPVPHPS SAGP+ L  ANNAAAILKRPRTPPTNN AMDYQTA
Sbjct: 241  PAPAPLPTSLAGWMANPSPVPHPSASAGPMGLATANNAAAILKRPRTPPTNNPAMDYQTA 300

Query: 301  DSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVK 360
            DSEHVLKR RPFGISDEVNNL VNILPVAYT QS GQSSYS+DDLPKTVVM+L QGS V+
Sbjct: 301  DSEHVLKRPRPFGISDEVNNLPVNILPVAYTGQSHGQSSYSSDDLPKTVVMSLPQGSTVR 360

Query: 361  SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTAS 420
            SMDFHPVQQILL+VGTNMGD+M+W++GSRER+A+K+FKVWEL +CSM LQ SL++DY AS
Sbjct: 361  SMDFHPVQQILLLVGTNMGDIMVWDLGSRERLAIKNFKVWELASCSMALQTSLANDYLAS 420

Query: 421  VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSV 480
            VNRVMWSPDGTLFGVAYSKHIVHLY+YH GD+LRNHLEIEAHVGSVNDLAFSYPNK L V
Sbjct: 421  VNRVMWSPDGTLFGVAYSKHIVHLYSYHNGDDLRNHLEIEAHVGSVNDLAFSYPNK-LCV 479

Query: 481  VTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN 540
            VTCGEDR IKVWDA TG+KQY FEGHE+PVYS+CPHHKENIQFIFSTA DGKIKAWLYDN
Sbjct: 480  VTCGEDRFIKVWDANTGSKQYTFEGHEAPVYSVCPHHKENIQFIFSTAIDGKIKAWLYDN 539

Query: 541  LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS 600
            +GSRVDYDAPGHSST MAYSADG RLFSCGTNKEG+SY+VEWNESEGAVKRTYHGLGKRS
Sbjct: 540  MGSRVDYDAPGHSSTTMAYSADGTRLFSCGTNKEGDSYIVEWNESEGAVKRTYHGLGKRS 599

Query: 601  VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS 660
            VGVVQFDTTKNRFLAAGDEF++KFWDMDNVNLL + DA+GGL ASPCIRFNKEGILLAVS
Sbjct: 600  VGVVQFDTTKNRFLAAGDEFLVKFWDMDNVNLLMTTDAEGGLPASPCIRFNKEGILLAVS 659

Query: 661  TNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERT 720
            TN+NGIKILAN +GIRLLRT+E+R+FDASRVASAA+VKAPAIGTF  AN  VGTS+G+R 
Sbjct: 660  TNENGIKILANQEGIRLLRTMENRSFDASRVASAAVVKAPAIGTFPPANPAVGTSIGDRA 719

Query: 721  APAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVS 780
            AP AAMVGM++D+R+  DVKP+IADE+ EKSRIWKLTEI E SQCRSLRLPDNLTAMRVS
Sbjct: 720  APVAAMVGMNSDNRSLVDVKPRIADESGEKSRIWKLTEINEQSQCRSLRLPDNLTAMRVS 779

Query: 781  RLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDT 840
            RL+YTNSG AILALASNAVHKLWKW RN+RN T KAT + APQLWQP SGILMTN+ISDT
Sbjct: 780  RLMYTNSGFAILALASNAVHKLWKWQRNDRNITTKATASVAPQLWQPSSGILMTNEISDT 839

Query: 841  NPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNII 900
            NPEDAVPCFALSKNDSYVMSASGGK+SLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNII
Sbjct: 840  NPEDAVPCFALSKNDSYVMSASGGKVSLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNII 899

Query: 901  AIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWE 960
            AIGMEDSSIQIYNVRVDEVKTKLKGHQKR+TGLAFS  LNVLVSSGADSQLCVW+TDGWE
Sbjct: 900  AIGMEDSSIQIYNVRVDEVKTKLKGHQKRVTGLAFSPVLNVLVSSGADSQLCVWNTDGWE 959

Query: 961  KQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREAS 1020
            KQASKFL +  G+ A+ LADTRVQFH DQ HLLAVHETQIAI+EA KLECL+Q+VPREAS
Sbjct: 960  KQASKFLQVSPGQAAAPLADTRVQFHHDQIHLLAVHETQIAIFEASKLECLRQWVPREAS 1019

Query: 1021 GPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGN 1080
            G ITHATYSCDSQSI+V+FE+GSVGVLTASTLR RCRINPTAYLP NPSLRVYPLV+A +
Sbjct: 1020 GSITHATYSCDSQSIFVSFEDGSVGVLTASTLRSRCRINPTAYLPPNPSLRVYPLVVAAH 1079

Query: 1081 PTDPNQFALGLTDGGVYIIEPLEAEGRWGTSPPNENGAGPSTTAGVAGAEQSQR 1134
            P++PNQFALGLTDGGV ++EPLE+EG+WGTSPP ENGAGPS+T+G AG++Q QR
Sbjct: 1080 PSEPNQFALGLTDGGVCVLEPLESEGKWGTSPPLENGAGPSSTSGAAGSDQPQR 1133

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546114|ref|XP_003541476.1| PREDICTED: topless-related protein 4-like [Glycine max]

 Score = 2085 bits (5401), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 987/1134 (87%), Positives = 1068/1134 (94%), Gaps = 2/1134 (0%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQ+SGFFFNMRYFEDMVTNGEWDEVEKYLSGF
Sbjct: 101  MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMRYFEDMVTNGEWDEVEKYLSGF 160

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDK+DRAKAV+ILVKDLKVF+AFNE+LFKEITQLLT
Sbjct: 161  TKVDDNRYSMKIFFEIRKQKYLEALDKQDRAKAVDILVKDLKVFAAFNEELFKEITQLLT 220

Query: 121  LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
            L+NFR NEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFP+LKNSRLRTLINQSLN
Sbjct: 221  LDNFRHNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPTLKNSRLRTLINQSLN 280

Query: 181  WQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQ 240
            WQHQLCKNPR NPDIKTLFVDH+CGQPNGARAPSPVTNPLMGAVPKAG FPPL AHGPFQ
Sbjct: 281  WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPVTNPLMGAVPKAGGFPPLGAHGPFQ 340

Query: 241  PTPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQTA 300
            PTPAALPTSLAGWMANPSPVPHPS SAGPI L AAN  AAILKRPRTPPTNN AMDYQTA
Sbjct: 341  PTPAALPTSLAGWMANPSPVPHPSASAGPIGLAAAN-NAAILKRPRTPPTNNPAMDYQTA 399

Query: 301  DSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVK 360
            DS+HVLKR+RPFG+SDEV+NL VN+LPVAY+ QS GQSSYS+DDLPKT+VMTLNQGS VK
Sbjct: 400  DSDHVLKRTRPFGLSDEVSNLPVNLLPVAYSGQSHGQSSYSSDDLPKTIVMTLNQGSIVK 459

Query: 361  SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTAS 420
            SMDFHP+QQILL+VGTNMGDVM+W++GSRERIA ++FKVWELG+CS+ LQASLS+DY+AS
Sbjct: 460  SMDFHPLQQILLLVGTNMGDVMVWDIGSRERIAQRNFKVWELGSCSVALQASLSNDYSAS 519

Query: 421  VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSV 480
            VNRV+WSPDGTL  VAYSKHIVH+Y+Y GGD+LRNHLEIEAH GSVNDLAFSYPNKQL V
Sbjct: 520  VNRVVWSPDGTLCSVAYSKHIVHIYSYQGGDDLRNHLEIEAHAGSVNDLAFSYPNKQLCV 579

Query: 481  VTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN 540
            VTCGEDRVIKVWDAVTG KQY FEGHE+PVYS+CPHHKE+IQFIFSTATDGKIKAWLYDN
Sbjct: 580  VTCGEDRVIKVWDAVTGAKQYTFEGHEAPVYSVCPHHKESIQFIFSTATDGKIKAWLYDN 639

Query: 541  LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS 600
            +GSRVDYDAPGHSST MAYSADG RLFSCGTNKEGES+LVEWNESEGAVKRTYHGLGKRS
Sbjct: 640  MGSRVDYDAPGHSSTTMAYSADGTRLFSCGTNKEGESFLVEWNESEGAVKRTYHGLGKRS 699

Query: 601  VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS 660
            VGVVQFDTTKNRFLAAGDEFMIKFWDMDN N+L S++ADGGL ASPCIRFNK+GILLAVS
Sbjct: 700  VGVVQFDTTKNRFLAAGDEFMIKFWDMDNTNMLTSVEADGGLLASPCIRFNKDGILLAVS 759

Query: 661  TNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERT 720
            TND+G+KILANA+GIRLLRTVE+RTFDASRVASAA+VKAP IG F S N  VGTSL +R 
Sbjct: 760  TNDSGVKILANAEGIRLLRTVENRTFDASRVASAAVVKAPTIGAFPSTNVTVGTSLADRA 819

Query: 721  APAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVS 780
             P AAMVG++ND+RN  DVKP+I DEAVEKSRIWKLTEI EPSQCRSL+LPD+L++MRVS
Sbjct: 820  PPVAAMVGINNDTRNLADVKPRIVDEAVEKSRIWKLTEINEPSQCRSLKLPDSLSSMRVS 879

Query: 781  RLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDT 840
            RLIYTN G+AILALA+NAVHKLWKW RNERN+TGKAT +  PQLWQP SGILMTNDISDT
Sbjct: 880  RLIYTNQGVAILALAANAVHKLWKWQRNERNTTGKATASIQPQLWQPSSGILMTNDISDT 939

Query: 841  NPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNII 900
            NPEDAV CFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNII
Sbjct: 940  NPEDAVSCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNII 999

Query: 901  AIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWE 960
            AIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFS+ LNVLVSSGADSQLCVWSTDGWE
Sbjct: 1000 AIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSHVLNVLVSSGADSQLCVWSTDGWE 1059

Query: 961  KQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREAS 1020
            KQASKFL +P+GR  + LADTRVQFHLDQTHLLAVHETQIA+YEAPKLEC+KQF PREA+
Sbjct: 1060 KQASKFLQMPSGRPPAPLADTRVQFHLDQTHLLAVHETQIALYEAPKLECIKQFSPREAN 1119

Query: 1021 GPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGN 1080
             PITHATYSCDSQSIYV+FE+GS+G+LT   LRLRCRIN +AYL  NPSLRV+PLVIA +
Sbjct: 1120 -PITHATYSCDSQSIYVSFEDGSIGILTVPALRLRCRINQSAYLHPNPSLRVHPLVIAAH 1178

Query: 1081 PTDPNQFALGLTDGGVYIIEPLEAEGRWGTSPPNENGAGPSTTAGVAGAEQSQR 1134
            P++PNQFALGLTDGGV+++EPLEAEG+WGT PPNENGAGPSTT+G A +EQ+QR
Sbjct: 1179 PSEPNQFALGLTDGGVHVLEPLEAEGKWGTPPPNENGAGPSTTSGAAVSEQTQR 1232

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443059|ref|XP_004139298.1| PREDICTED: topless-related protein 4-like [Cucumis sativus]

 Score = 2083 bits (5397), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 985/1135 (86%), Positives = 1060/1135 (93%), Gaps = 2/1135 (0%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQ+SGFFFNMRYFEDMVTNGEW+EVEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMRYFEDMVTNGEWEEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAV+ILVKDLKVFSAFNE+LFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVDILVKDLKVFSAFNEELFKEITQLLT 120

Query: 121  LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
            LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFP+LKNSRLRTLINQSLN
Sbjct: 121  LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPTLKNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQ 240
            WQHQLCKNPR NPDIKTLFVDH+CGQPNGARAPSPVTNPLMG VPKA AFPPLSAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPVTNPLMGGVPKAAAFPPLSAHGPFQ 240

Query: 241  PTPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQTA 300
            PTPAALPTSLAGWMANPSPVPHPS SA PI L AANNAA ILKRPRTPPTNN  MDYQTA
Sbjct: 241  PTPAALPTSLAGWMANPSPVPHPSASAAPIGLNAANNAA-ILKRPRTPPTNNPTMDYQTA 299

Query: 301  DSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVK 360
            DSEHVLKRSRPFG+S+EV NL VNILPV Y  Q  GQSSYS+DDLPK VV TL+QGS VK
Sbjct: 300  DSEHVLKRSRPFGLSEEVTNLPVNILPVGYGNQGHGQSSYSSDDLPKNVVTTLSQGSVVK 359

Query: 361  SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTAS 420
            SMDFHP QQ +L+VGTN+GDVM+WEVG RERIA+++FKVW+L A S+ LQASL+SDYTAS
Sbjct: 360  SMDFHPQQQTILLVGTNVGDVMIWEVGGRERIAIRNFKVWDLAARSVALQASLASDYTAS 419

Query: 421  VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSV 480
            +NRVMWSPDGTLFGVAYSKHIVH+Y+Y  GDELRNHLEIEAHVGSVNDLAF Y NKQL +
Sbjct: 420  INRVMWSPDGTLFGVAYSKHIVHIYSYQAGDELRNHLEIEAHVGSVNDLAFLYANKQLCL 479

Query: 481  VTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN 540
            VTCGEDRVIKVWDAVTG KQ+ FEGH++PVYSICPHHKENIQFIFSTA DGKIKAWLYDN
Sbjct: 480  VTCGEDRVIKVWDAVTGVKQFTFEGHDAPVYSICPHHKENIQFIFSTAADGKIKAWLYDN 539

Query: 541  LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS 600
            +GSRVDYDAPGHSST MAYSADG RLFSCGTNK+GESYLVEWNESEGAVKRTY GLGKRS
Sbjct: 540  MGSRVDYDAPGHSSTTMAYSADGTRLFSCGTNKDGESYLVEWNESEGAVKRTYQGLGKRS 599

Query: 601  VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS 660
            VGVVQFDTTKNRFLAAGD+F +KFWDMD+VN+L SIDADGGL ASPCIRFNK+G+LLAVS
Sbjct: 600  VGVVQFDTTKNRFLAAGDDFSVKFWDMDSVNILTSIDADGGLPASPCIRFNKDGVLLAVS 659

Query: 661  TNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERT 720
            TNDNGIKILANA+G R+LRTVE+RTFDASRVASAA+VKAP IG+FG    +VG S+G+RT
Sbjct: 660  TNDNGIKILANAEGFRMLRTVENRTFDASRVASAAVVKAPPIGSFGPPAVSVGMSIGDRT 719

Query: 721  AP-AAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRV 779
             P AAAMVG++NDSR+  DVKP+IADE+V+KSRIWKLTEI EP+QCRSLRLPDNLTA RV
Sbjct: 720  PPVAAAMVGINNDSRSLADVKPRIADESVDKSRIWKLTEINEPTQCRSLRLPDNLTASRV 779

Query: 780  SRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISD 839
            SRLIYTNSGLAILALASNAVHKLW+W RN+RN T KAT + APQLWQPPSGILMTNDISD
Sbjct: 780  SRLIYTNSGLAILALASNAVHKLWRWQRNDRNVTVKATASVAPQLWQPPSGILMTNDISD 839

Query: 840  TNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNI 899
            TNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNI
Sbjct: 840  TNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNI 899

Query: 900  IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGW 959
            IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSN LNVLVSSGADSQLCVWSTDGW
Sbjct: 900  IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNQLNVLVSSGADSQLCVWSTDGW 959

Query: 960  EKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREA 1019
            EKQ +KFL +P+ RT + LADTRVQFH+DQ HLLA+HETQIAIYEAPKLECLKQ+VPREA
Sbjct: 960  EKQVNKFLQVPSSRTTAPLADTRVQFHIDQIHLLAIHETQIAIYEAPKLECLKQWVPREA 1019

Query: 1020 SGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAG 1079
            SGPITHAT+SCDSQSIYV+FE+GSVGVLTASTLRLRCRINP AYL +NPSLRV+PLVIA 
Sbjct: 1020 SGPITHATFSCDSQSIYVSFEDGSVGVLTASTLRLRCRINPNAYLSSNPSLRVHPLVIAA 1079

Query: 1080 NPTDPNQFALGLTDGGVYIIEPLEAEGRWGTSPPNENGAGPSTTAGVAGAEQSQR 1134
            +P++PNQFALGL+DGGV+++EP E+EG+WGTSPP ENGAGPST  G AG +Q QR
Sbjct: 1080 HPSEPNQFALGLSDGGVHVLEPSESEGKWGTSPPVENGAGPSTATGAAGPDQPQR 1134

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562983|ref|XP_003549747.1| PREDICTED: topless-related protein 4-like [Glycine max]

 Score = 2078 bits (5384), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 985/1136 (86%), Positives = 1066/1136 (93%), Gaps = 4/1136 (0%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQ+SGFFFNMRYFEDMVTNGEWDEVEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDK+DRAKAV+ILVKDLKVF+AFNE+LFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKQDRAKAVDILVKDLKVFAAFNEELFKEITQLLT 120

Query: 121  LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
            L+NFR NEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFP+LKNSRLRTLINQSLN
Sbjct: 121  LDNFRHNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPTLKNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRANPDIKTLFVDHTCGQ--PNGARAPSPVTNPLMGAVPKAGAFPPLSAHGP 238
            WQHQLCKNPR NPDIKTLFVDH+CGQ  PNGARAPSPVTNPLMGAVPKAG FPPL AHGP
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHSCGQVQPNGARAPSPVTNPLMGAVPKAGGFPPLGAHGP 240

Query: 239  FQPTPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQ 298
            FQPTPAALPTSLAGWMANPSPVPHPS SAGPI L AAN  AAILKRPRTPP+NN AMDYQ
Sbjct: 241  FQPTPAALPTSLAGWMANPSPVPHPSASAGPIGLAAAN-NAAILKRPRTPPSNNPAMDYQ 299

Query: 299  TADSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSA 358
            TADS+HVLKR+RPFG+SDEV+NL VN+LPVAY+ QS GQSSYS+DDLPKTVVMTLNQGS 
Sbjct: 300  TADSDHVLKRTRPFGLSDEVSNLPVNLLPVAYSGQSHGQSSYSSDDLPKTVVMTLNQGSI 359

Query: 359  VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT 418
            VKSMDFHP+QQILL+VGTNMGDVM+W++GSRERIA ++FKVWELGACS+ LQASLS+DY+
Sbjct: 360  VKSMDFHPLQQILLLVGTNMGDVMVWDIGSRERIAQRNFKVWELGACSVALQASLSNDYS 419

Query: 419  ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQL 478
            AS+NRV+WSPDGTL  VAYSKHIVH+Y+YHGGD+LRNHLEIEAH GSVNDLAFSYPNKQL
Sbjct: 420  ASINRVVWSPDGTLCSVAYSKHIVHIYSYHGGDDLRNHLEIEAHAGSVNDLAFSYPNKQL 479

Query: 479  SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLY 538
             VVTCGEDRVIKVWDAVTG KQY FEGHE+PVYS+CPHHKE+IQFIFSTATDGKIKAWLY
Sbjct: 480  CVVTCGEDRVIKVWDAVTGAKQYTFEGHEAPVYSVCPHHKESIQFIFSTATDGKIKAWLY 539

Query: 539  DNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK 598
            DN+GSRVDYDAPGHSST MAYSADG RLFSCGTNKEGES+LVEWNESEGAVKRTYHGLGK
Sbjct: 540  DNMGSRVDYDAPGHSSTTMAYSADGTRLFSCGTNKEGESFLVEWNESEGAVKRTYHGLGK 599

Query: 599  RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLA 658
            RSVGVVQFDTTKNRFLAAGDEF IKFWDMDN N+L S++A+GGL ASPCIRFNK+GILLA
Sbjct: 600  RSVGVVQFDTTKNRFLAAGDEFTIKFWDMDNTNMLTSVEAEGGLLASPCIRFNKDGILLA 659

Query: 659  VSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGE 718
            VSTNDNG+KILANA+GIRLLRTVE+RTFDASRVASAA+VKAP IG F S N  VGTSL +
Sbjct: 660  VSTNDNGVKILANAEGIRLLRTVENRTFDASRVASAAVVKAPTIGAFPSTNVTVGTSLAD 719

Query: 719  RTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMR 778
            R  P AAMVG++ND+RN  DVKP+I DE+VEKSRIWKLTEI EPSQCRSL+LPD+L++MR
Sbjct: 720  RAPPVAAMVGINNDTRNLADVKPRIVDESVEKSRIWKLTEINEPSQCRSLKLPDSLSSMR 779

Query: 779  VSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDIS 838
            VSRLIYTN G+AILALA+NAVHKLWKW RNERN+TGKAT +  PQLWQP SGILMTNDIS
Sbjct: 780  VSRLIYTNQGVAILALAANAVHKLWKWQRNERNTTGKATASIQPQLWQPSSGILMTNDIS 839

Query: 839  DTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN 898
            DTNPEDAV CFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN
Sbjct: 840  DTNPEDAVSCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN 899

Query: 899  IIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDG 958
            IIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFS+ LNVLVSSGADSQLCVWSTDG
Sbjct: 900  IIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSHVLNVLVSSGADSQLCVWSTDG 959

Query: 959  WEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPRE 1018
            WEKQASKFL +P+GR  + LADTRVQFHLDQTHLLAVHETQIA+YEAPKLEC+KQF PRE
Sbjct: 960  WEKQASKFLQMPSGRPPAPLADTRVQFHLDQTHLLAVHETQIALYEAPKLECIKQFSPRE 1019

Query: 1019 ASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIA 1078
            A+ PITHATYSCDSQSIYV+FE+GS+G+LT   LRLRCRIN +AYL  NPSLRV+PLVIA
Sbjct: 1020 AN-PITHATYSCDSQSIYVSFEDGSIGILTVPALRLRCRINQSAYLHPNPSLRVHPLVIA 1078

Query: 1079 GNPTDPNQFALGLTDGGVYIIEPLEAEGRWGTSPPNENGAGPSTTAGVAGAEQSQR 1134
             +P++PNQFALGLTDGGV+++EPLEAEG+WGT PPNENGAGPST +G A +EQ QR
Sbjct: 1079 AHPSEPNQFALGLTDGGVHVLEPLEAEGKWGTPPPNENGAGPSTASGAAVSEQPQR 1134

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484209|ref|XP_003633079.1| PREDICTED: topless-related protein 4-like [Vitis vinifera]

 Score = 2072 bits (5368), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 982/1134 (86%), Positives = 1056/1134 (93%), Gaps = 11/1134 (0%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQ+SGFFFNMRYFE+ VTNGEWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMRYFEETVTNGEWDDVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNE+LFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEELFKEITQLLT 120

Query: 121  LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
            LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN
Sbjct: 121  LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQ 240
            WQHQLCKNP+ANPDIKTLFVDHTCGQPNGARAPSPVTNPLMG VPKAG FPPLSAHGPFQ
Sbjct: 181  WQHQLCKNPKANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGTVPKAGGFPPLSAHGPFQ 240

Query: 241  PTPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQTA 300
            P PA LPTSLAGWMANPSPVPHPS SAGP+ L  ANNAAAILKRPRTPPTNN AMDYQTA
Sbjct: 241  PAPAPLPTSLAGWMANPSPVPHPSASAGPMGLATANNAAAILKRPRTPPTNNPAMDYQTA 300

Query: 301  DSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVK 360
            DSEHVLKR RPFGISDEV          AYT QS GQSSYS+DDLPKTVVM+L QGS V+
Sbjct: 301  DSEHVLKRPRPFGISDEV----------AYTGQSHGQSSYSSDDLPKTVVMSLPQGSTVR 350

Query: 361  SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTAS 420
            SMDFHPVQQILL+VGTNMGD+M+W++GSRER+A+K+FKVWEL +CSM LQ SL++DY AS
Sbjct: 351  SMDFHPVQQILLLVGTNMGDIMVWDLGSRERLAIKNFKVWELASCSMALQTSLANDYLAS 410

Query: 421  VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSV 480
            VNRVMWSPDGTLFGVAYSKHIVHLY+YH GD+LRNHLEIEAHVGSVNDLAFSYPNK L V
Sbjct: 411  VNRVMWSPDGTLFGVAYSKHIVHLYSYHNGDDLRNHLEIEAHVGSVNDLAFSYPNK-LCV 469

Query: 481  VTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN 540
            VTCGEDR IKVWDA TG+KQY FEGHE+PVYS+CPHHKENIQFIFSTA DGKIKAWLYDN
Sbjct: 470  VTCGEDRFIKVWDANTGSKQYTFEGHEAPVYSVCPHHKENIQFIFSTAIDGKIKAWLYDN 529

Query: 541  LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS 600
            +GSRVDYDAPGHSST MAYSADG RLFSCGTNKEG+SY+VEWNESEGAVKRTYHGLGKRS
Sbjct: 530  MGSRVDYDAPGHSSTTMAYSADGTRLFSCGTNKEGDSYIVEWNESEGAVKRTYHGLGKRS 589

Query: 601  VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS 660
            VGVVQFDTTKNRFLAAGDEF++KFWDMDNVNLL + DA+GGL ASPCIRFNKEGILLAVS
Sbjct: 590  VGVVQFDTTKNRFLAAGDEFLVKFWDMDNVNLLMTTDAEGGLPASPCIRFNKEGILLAVS 649

Query: 661  TNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERT 720
            TN+NGIKILAN +GIRLLRT+E+R+FDASRVASAA+VKAPAIGTF  AN  VGTS+G+R 
Sbjct: 650  TNENGIKILANQEGIRLLRTMENRSFDASRVASAAVVKAPAIGTFPPANPAVGTSIGDRA 709

Query: 721  APAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVS 780
            AP AAMVGM++D+R+  DVKP+IADE+ EKSRIWKLTEI E SQCRSLRLPDNLTAMRVS
Sbjct: 710  APVAAMVGMNSDNRSLVDVKPRIADESGEKSRIWKLTEINEQSQCRSLRLPDNLTAMRVS 769

Query: 781  RLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDT 840
            RL+YTNSG AILALASNAVHKLWKW RN+RN T KAT + APQLWQP SGILMTN+ISDT
Sbjct: 770  RLMYTNSGFAILALASNAVHKLWKWQRNDRNITTKATASVAPQLWQPSSGILMTNEISDT 829

Query: 841  NPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNII 900
            NPEDAVPCFALSKNDSYVMSASGGK+SLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNII
Sbjct: 830  NPEDAVPCFALSKNDSYVMSASGGKVSLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNII 889

Query: 901  AIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWE 960
            AIGMEDSSIQIYNVRVDEVKTKLKGHQKR+TGLAFS  LNVLVSSGADSQLCVW+TDGWE
Sbjct: 890  AIGMEDSSIQIYNVRVDEVKTKLKGHQKRVTGLAFSPVLNVLVSSGADSQLCVWNTDGWE 949

Query: 961  KQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREAS 1020
            KQASKFL +  G+ A+ LADTRVQFH DQ HLLAVHETQIAI+EA KLECL+Q+VPREAS
Sbjct: 950  KQASKFLQVSPGQAAAPLADTRVQFHHDQIHLLAVHETQIAIFEASKLECLRQWVPREAS 1009

Query: 1021 GPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGN 1080
            G ITHATYSCDSQSI+V+FE+GSVGVLTASTLR RCRINPTAYLP NPSLRVYPLV+A +
Sbjct: 1010 GSITHATYSCDSQSIFVSFEDGSVGVLTASTLRSRCRINPTAYLPPNPSLRVYPLVVAAH 1069

Query: 1081 PTDPNQFALGLTDGGVYIIEPLEAEGRWGTSPPNENGAGPSTTAGVAGAEQSQR 1134
            P++PNQFALGLTDGGV ++EPLE+EG+WGTSPP ENGAGPS+T+G AG++Q QR
Sbjct: 1070 PSEPNQFALGLTDGGVCVLEPLESEGKWGTSPPLENGAGPSSTSGAAGSDQPQR 1123

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484211|ref|XP_003633080.1| PREDICTED: topless-related protein 4-like [Vitis vinifera]

 Score = 2064 bits (5348), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 982/1134 (86%), Positives = 1055/1134 (93%), Gaps = 11/1134 (0%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQ+SGFFFNMRYFE+ VTNGEWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMRYFEETVTNGEWDDVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNE+LFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEELFKEITQLLT 120

Query: 121  LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
            LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN
Sbjct: 121  LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQ 240
            WQHQLCKNP+ANPDIKTLFVDHTCGQPNGARAPSPVTNPLMG VPKAG FPPLSAHGPFQ
Sbjct: 181  WQHQLCKNPKANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGTVPKAGGFPPLSAHGPFQ 240

Query: 241  PTPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQTA 300
            P PA LPTSLAGWMANPSPVPHPS SAGP+ L  ANNAAAILKRPRTPPTNN AMDYQTA
Sbjct: 241  PAPAPLPTSLAGWMANPSPVPHPSASAGPMGLATANNAAAILKRPRTPPTNNPAMDYQTA 300

Query: 301  DSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVK 360
            DSEHVLKR RPFGISDEVNNL VNILPVAYT QS GQSSYS+DDLPKTVVM+L QGS V+
Sbjct: 301  DSEHVLKRPRPFGISDEVNNLPVNILPVAYTGQSHGQSSYSSDDLPKTVVMSLPQGSTVR 360

Query: 361  SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTAS 420
            SMDFHPVQQILL+VGTNMGD+M+W++GSRER+A+K+FKVWEL +CSM LQ SL++DY AS
Sbjct: 361  SMDFHPVQQILLLVGTNMGDIMVWDLGSRERLAIKNFKVWELASCSMALQTSLANDYLAS 420

Query: 421  VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSV 480
            VNRVMWSPDGTLFGVAYSKHIVHLY+YH GD+LRNHLEIEAHVGSVNDLAFSYPNK L V
Sbjct: 421  VNRVMWSPDGTLFGVAYSKHIVHLYSYHNGDDLRNHLEIEAHVGSVNDLAFSYPNK-LCV 479

Query: 481  VTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN 540
            VTCGEDR IKVWDA TG+KQY FEGHE+PVYS          FIFSTA DGKIKAWLYDN
Sbjct: 480  VTCGEDRFIKVWDANTGSKQYTFEGHEAPVYS----------FIFSTAIDGKIKAWLYDN 529

Query: 541  LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS 600
            +GSRVDYDAPGHSST MAYSADG RLFSCGTNKEG+SY+VEWNESEGAVKRTYHGLGKRS
Sbjct: 530  MGSRVDYDAPGHSSTTMAYSADGTRLFSCGTNKEGDSYIVEWNESEGAVKRTYHGLGKRS 589

Query: 601  VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS 660
            VGVVQFDTTKNRFLAAGDEF++KFWDMDNVNLL + DA+GGL ASPCIRFNKEGILLAVS
Sbjct: 590  VGVVQFDTTKNRFLAAGDEFLVKFWDMDNVNLLMTTDAEGGLPASPCIRFNKEGILLAVS 649

Query: 661  TNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERT 720
            TN+NGIKILAN +GIRLLRT+E+R+FDASRVASAA+VKAPAIGTF  AN  VGTS+G+R 
Sbjct: 650  TNENGIKILANQEGIRLLRTMENRSFDASRVASAAVVKAPAIGTFPPANPAVGTSIGDRA 709

Query: 721  APAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVS 780
            AP AAMVGM++D+R+  DVKP+IADE+ EKSRIWKLTEI E SQCRSLRLPDNLTAMRVS
Sbjct: 710  APVAAMVGMNSDNRSLVDVKPRIADESGEKSRIWKLTEINEQSQCRSLRLPDNLTAMRVS 769

Query: 781  RLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDT 840
            RL+YTNSG AILALASNAVHKLWKW RN+RN T KAT + APQLWQP SGILMTN+ISDT
Sbjct: 770  RLMYTNSGFAILALASNAVHKLWKWQRNDRNITTKATASVAPQLWQPSSGILMTNEISDT 829

Query: 841  NPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNII 900
            NPEDAVPCFALSKNDSYVMSASGGK+SLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNII
Sbjct: 830  NPEDAVPCFALSKNDSYVMSASGGKVSLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNII 889

Query: 901  AIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWE 960
            AIGMEDSSIQIYNVRVDEVKTKLKGHQKR+TGLAFS  LNVLVSSGADSQLCVW+TDGWE
Sbjct: 890  AIGMEDSSIQIYNVRVDEVKTKLKGHQKRVTGLAFSPVLNVLVSSGADSQLCVWNTDGWE 949

Query: 961  KQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREAS 1020
            KQASKFL +  G+ A+ LADTRVQFH DQ HLLAVHETQIAI+EA KLECL+Q+VPREAS
Sbjct: 950  KQASKFLQVSPGQAAAPLADTRVQFHHDQIHLLAVHETQIAIFEASKLECLRQWVPREAS 1009

Query: 1021 GPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGN 1080
            G ITHATYSCDSQSI+V+FE+GSVGVLTASTLR RCRINPTAYLP NPSLRVYPLV+A +
Sbjct: 1010 GSITHATYSCDSQSIFVSFEDGSVGVLTASTLRSRCRINPTAYLPPNPSLRVYPLVVAAH 1069

Query: 1081 PTDPNQFALGLTDGGVYIIEPLEAEGRWGTSPPNENGAGPSTTAGVAGAEQSQR 1134
            P++PNQFALGLTDGGV ++EPLE+EG+WGTSPP ENGAGPS+T+G AG++Q QR
Sbjct: 1070 PSEPNQFALGLTDGGVCVLEPLESEGKWGTSPPLENGAGPSSTSGAAGSDQPQR 1123

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478183|ref|XP_003609377.1| WD repeat-containing protein [Medicago truncatula] gi|355510432|gb|AES91574.1| WD repeat-containing protein [Medicago truncatula]

 Score = 2037 bits (5277), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 964/1136 (84%), Positives = 1044/1136 (91%), Gaps = 6/1136 (0%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKE+VH+LEQ+SGFFFNMRYFE+MVTNGEWDEVEKYL+GF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMRYFEEMVTNGEWDEVEKYLTGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDK DR+KAVEILVKDLKVF+AFNE+LFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKGDRSKAVEILVKDLKVFAAFNEELFKEITQLLT 120

Query: 121  LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
            L+NFR NEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN
Sbjct: 121  LDNFRQNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQ 240
            WQHQLCKNPR NPDIKTLFVDH+CGQPNGARAPSPVTNPLM  VPK G FPPLSAHGP  
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPVTNPLMAGVPKVGGFPPLSAHGP-- 238

Query: 241  PTPAALPTSLAGWMANPSPVPHPSPSAG--PIALTAANNAAAILKRPRTPPTNNSAMDYQ 298
             TP ALPTSLAGWMA    V HPS SAG  PI L  ANN AA+LKRPRTPP NN AMDYQ
Sbjct: 239  -TPNALPTSLAGWMAASPQVQHPSASAGVGPIGLAQANNPAALLKRPRTPP-NNPAMDYQ 296

Query: 299  TADSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSA 358
            TADS+HV+KR+RPFGISDEVNNL VN+LPVAY+ QS GQSSYS+DDLPKT VMTLNQGS 
Sbjct: 297  TADSDHVMKRTRPFGISDEVNNLPVNLLPVAYSSQSHGQSSYSSDDLPKTAVMTLNQGST 356

Query: 359  VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT 418
            VKSMDFHP+QQILL+VGTNMGDVM+W++GSRERIA +SFKVW+L  CS+ LQASLS++Y+
Sbjct: 357  VKSMDFHPLQQILLLVGTNMGDVMVWDIGSRERIAHRSFKVWDLQVCSVALQASLSNEYS 416

Query: 419  ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQL 478
            ASVNRV+WSPDGTL  VAYSKHIVH+Y+YHGGD+LRNHLEIEAH GSVNDLAFSYPNKQL
Sbjct: 417  ASVNRVVWSPDGTLCSVAYSKHIVHIYSYHGGDDLRNHLEIEAHAGSVNDLAFSYPNKQL 476

Query: 479  SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLY 538
             VVTCGEDRVIKVWDAVTG KQY FEGHE+PVYS+CPHHKENIQFIFSTATDGKIKAWLY
Sbjct: 477  CVVTCGEDRVIKVWDAVTGAKQYTFEGHEAPVYSVCPHHKENIQFIFSTATDGKIKAWLY 536

Query: 539  DNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK 598
            DN+GSRVDYDAPGHSST M+YSADG RLFSCGTNKEGES+LVEWNESEGAVKRTYHGLGK
Sbjct: 537  DNMGSRVDYDAPGHSSTTMSYSADGTRLFSCGTNKEGESFLVEWNESEGAVKRTYHGLGK 596

Query: 599  RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLA 658
            RS GVVQFDTTKNRFLAAGDEFM+KFWDMD+ NLL S DADGGL ASPCIRFNKEGILLA
Sbjct: 597  RSTGVVQFDTTKNRFLAAGDEFMVKFWDMDSTNLLTSFDADGGLLASPCIRFNKEGILLA 656

Query: 659  VSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGE 718
            VST+DNG+KILANA+GIRLLRTVE+R FDASR ASAA VK P IG F S N  VGTSL +
Sbjct: 657  VSTSDNGVKILANAEGIRLLRTVENRAFDASRAASAANVKPPTIGAFPSTNVAVGTSLAD 716

Query: 719  RTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMR 778
            RT P AAMVG++NDSR+  DVKP+I DEAVEKSRIWKLTEI E SQCRSL+LPD L++MR
Sbjct: 717  RTPPVAAMVGLNNDSRSLADVKPRIVDEAVEKSRIWKLTEINEQSQCRSLKLPDGLSSMR 776

Query: 779  VSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDIS 838
            VSRLIYTN G+AILALA+NAVHKLWKW +N+RN++GKAT +  PQLWQP SGILMTN+I 
Sbjct: 777  VSRLIYTNQGVAILALAANAVHKLWKWQKNDRNTSGKATASLQPQLWQPSSGILMTNEIG 836

Query: 839  DTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN 898
            DTNPEDAV CFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN
Sbjct: 837  DTNPEDAVSCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN 896

Query: 899  IIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDG 958
            IIAIGM+DSSIQIYNVRVDEVKTKLKGHQKRITGLAFS+ LN+LVSSGADSQLCVWSTDG
Sbjct: 897  IIAIGMDDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSHVLNILVSSGADSQLCVWSTDG 956

Query: 959  WEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPRE 1018
            WEKQ +KFL +PNGR  + LADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQ+VPRE
Sbjct: 957  WEKQTNKFLQMPNGRALAPLADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQWVPRE 1016

Query: 1019 ASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIA 1078
            ASGPITHATYSCDSQSIYV+FE+GS+GVLTASTLRLRCRIN TAYL  NPSLRVYPLVIA
Sbjct: 1017 ASGPITHATYSCDSQSIYVSFEDGSIGVLTASTLRLRCRINQTAYLNPNPSLRVYPLVIA 1076

Query: 1079 GNPTDPNQFALGLTDGGVYIIEPLEAEGRWGTSPPNENGAGPSTTAGVAGAEQSQR 1134
             +P++ NQFALGLTDGGV+++EPLE+EGRWG+ PP ENG GPST +G + +EQ QR
Sbjct: 1077 AHPSESNQFALGLTDGGVHVLEPLESEGRWGSPPPTENGVGPSTPSGASVSEQPQR 1132

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572487|ref|XP_002527178.1| WD-repeat protein, putative [Ricinus communis] gi|223533443|gb|EEF35191.1| WD-repeat protein, putative [Ricinus communis]

 Score = 2019 bits (5232), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 966/1136 (85%), Positives = 1058/1136 (93%), Gaps = 4/1136 (0%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
            M+SLSRELVFLILQFLDEEKFKETVHKLEQ+SGFFFNMRYFEDMVTNGEWDEVEKYLSGF
Sbjct: 1    MTSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVF+AFNE+LFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFAAFNEELFKEITQLLT 120

Query: 121  LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
            LENFRDNEQLSKYGDTKSAR IMLAELKKLIEANPLFRDKLQFP+LKNSRLRTLINQSLN
Sbjct: 121  LENFRDNEQLSKYGDTKSARNIMLAELKKLIEANPLFRDKLQFPTLKNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQ 240
            WQHQLCKNPR NPDIKTLFVDH+CGQPNGARAPSPVTNPLMGA+PKAG FPPLSAH PFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPVTNPLMGALPKAGGFPPLSAHVPFQ 240

Query: 241  PTPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQTA 300
            PTPAALPTSLAGWMAN S VPHPS SAGPI L+A NNAA I+KRPRTPPTNN +MDYQTA
Sbjct: 241  PTPAALPTSLAGWMANSSAVPHPSASAGPIGLSAPNNAA-IIKRPRTPPTNNPSMDYQTA 299

Query: 301  DSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVK 360
            DSE+VLKR+RPFGISDEV+NL VNILPVAY+ Q+ GQSSYS+DDLPKT+VM LNQGSAVK
Sbjct: 300  DSENVLKRTRPFGISDEVSNLPVNILPVAYSSQNHGQSSYSSDDLPKTLVMALNQGSAVK 359

Query: 361  SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTAS 420
            SMDFHPVQQILL+VGT+MGDVM+WE+GSRERIA+K+FKVWELGA S+ LQASL++DYTAS
Sbjct: 360  SMDFHPVQQILLLVGTSMGDVMVWELGSRERIALKNFKVWELGARSVGLQASLTNDYTAS 419

Query: 421  VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSV 480
            VNRV+WSPDG LFGVAYSKHIVHLY+YH GD+++N+ EIEAH GSVNDLAFSY + +LSV
Sbjct: 420  VNRVLWSPDGALFGVAYSKHIVHLYSYHVGDDVKNYREIEAHNGSVNDLAFSY-HDRLSV 478

Query: 481  VTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN 540
            ++CGEDRVIKVWD +TG  ++ FEGHE+PVYS+CPHHKE+IQFIFSTATDGKIKAWLYDN
Sbjct: 479  ISCGEDRVIKVWDPLTGNPKFTFEGHEAPVYSVCPHHKESIQFIFSTATDGKIKAWLYDN 538

Query: 541  LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS 600
            LGSRVDYDAPGHSST MAYSADG RLFSCGTNKEGES+LVEWNESEG VKR+Y GLGKRS
Sbjct: 539  LGSRVDYDAPGHSSTTMAYSADGTRLFSCGTNKEGESHLVEWNESEGTVKRSYIGLGKRS 598

Query: 601  VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS 660
            +GVVQFDTTKNRFLAAGDEFM+KFWDMDN+NLL SIDA+GGL ASPCIRFNK+G LLA+S
Sbjct: 599  MGVVQFDTTKNRFLAAGDEFMVKFWDMDNINLLTSIDAEGGLPASPCIRFNKDGSLLAIS 658

Query: 661  TNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLG--E 718
            TN+N IK LAN++GIRLLRTVE+RTFDASR ASAA+VK PAIG F + NA  GTS+   E
Sbjct: 659  TNENSIKFLANSEGIRLLRTVENRTFDASRAASAAVVKGPAIGNFPTGNATAGTSISIVE 718

Query: 719  RTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMR 778
            R A  A MVG++NDSR   DVKP+IADE  E SRIWKLTE+ EPSQCRSLRLPDNLTAMR
Sbjct: 719  RAAAVAPMVGINNDSRILADVKPRIADEPTENSRIWKLTEVNEPSQCRSLRLPDNLTAMR 778

Query: 779  VSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDIS 838
            VSRLIYTNSGL++L LASNAVHKLWKW RN+RN +GKAT +  PQLWQP SGILMTNDIS
Sbjct: 779  VSRLIYTNSGLSLLGLASNAVHKLWKWQRNDRNLSGKATASVVPQLWQPSSGILMTNDIS 838

Query: 839  DTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN 898
            DTNPED+VPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN
Sbjct: 839  DTNPEDSVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN 898

Query: 899  IIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDG 958
            IIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFS++LNVLVSSGAD+QLCVWSTDG
Sbjct: 899  IIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSHSLNVLVSSGADAQLCVWSTDG 958

Query: 959  WEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPRE 1018
            WEKQASKFL IP GR +++L DTRVQFHLDQTHLLAVHE++IAIYEAPKLEC+KQ+ P E
Sbjct: 959  WEKQASKFLQIPPGRGSASLVDTRVQFHLDQTHLLAVHESRIAIYEAPKLECVKQWFPWE 1018

Query: 1019 ASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIA 1078
            +SGPITHATYSCDSQ+IYV+FE+ SVGVLT+STL LRCRINPTAYLP NPSLRVYPLVIA
Sbjct: 1019 SSGPITHATYSCDSQTIYVSFEDASVGVLTSSTLALRCRINPTAYLPPNPSLRVYPLVIA 1078

Query: 1079 GNPTDPNQFALGLTDGGVYIIEPLEAEGRWGTSPPNENGAGPSTTAGVAGAEQSQR 1134
             + ++PNQFALGLTDGGVY++EPLE+EG+WGTSPP ENGAGPSTT+  AG+EQ+QR
Sbjct: 1079 AHTSEPNQFALGLTDGGVYVLEPLESEGKWGTSPPLENGAGPSTTSNAAGSEQAQR 1134

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087108|ref|XP_002308068.1| predicted protein [Populus trichocarpa] gi|222854044|gb|EEE91591.1| predicted protein [Populus trichocarpa]

 Score = 2016 bits (5223), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 961/1135 (84%), Positives = 1047/1135 (92%), Gaps = 4/1135 (0%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
            MSSLSRELVFLILQFL+EEKFKETVH+LEQ+SGF+FNMRYFE+MVTNGEWDEVEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLEEEKFKETVHRLEQESGFYFNMRYFEEMVTNGEWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVF+AFNE+LFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFAAFNEELFKEITQLLT 120

Query: 121  LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
            LENFRDNEQLSKYGDTKSARGIML ELKKLIEANPLFRDKLQFP+LKNSRLRTLINQSLN
Sbjct: 121  LENFRDNEQLSKYGDTKSARGIMLGELKKLIEANPLFRDKLQFPTLKNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQ 240
            WQHQLCK PR+NPDIKTLFVDH+CGQPNGARAPSPVTN LM AVPKAG FPP++ HGPFQ
Sbjct: 181  WQHQLCKTPRSNPDIKTLFVDHSCGQPNGARAPSPVTNSLMDAVPKAGGFPPITGHGPFQ 240

Query: 241  PTPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQTA 300
            PTP  +P SLAGWMANPS VPHPS SAGP+ L A NNA A+LKRPR+PPTNN A+DYQTA
Sbjct: 241  PTPT-IPPSLAGWMANPSTVPHPSASAGPMGLAAPNNAVALLKRPRSPPTNNPAIDYQTA 299

Query: 301  DSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVK 360
            DSEHVLKRSRPFG+SDEVNNL VNILP+AY  Q+ GQSSYS+DDLPK  VMTL QGSAVK
Sbjct: 300  DSEHVLKRSRPFGLSDEVNNLPVNILPIAYPSQNHGQSSYSSDDLPKNPVMTLAQGSAVK 359

Query: 361  SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTAS 420
            SMDFHP+QQILL+VGT+MGDVM+WE+GSRERI  K+FKVW+    S  LQASLSSDYTAS
Sbjct: 360  SMDFHPLQQILLLVGTSMGDVMVWELGSRERIGWKNFKVWDHN--SRALQASLSSDYTAS 417

Query: 421  VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSV 480
            VNRV WSPDGTLFGVAYSKHIVH+Y+YHGGD++RNHL+I+AH GSVNDLAFSYPNKQL++
Sbjct: 418  VNRVAWSPDGTLFGVAYSKHIVHVYSYHGGDDIRNHLQIDAHNGSVNDLAFSYPNKQLAI 477

Query: 481  VTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN 540
            VTCG+DR I+VWDAV GT+ + F GHE+PVYS+CPHHKENIQFIFSTA DGKIKAWLYDN
Sbjct: 478  VTCGDDRTIRVWDAVAGTRLFNFLGHEAPVYSVCPHHKENIQFIFSTAADGKIKAWLYDN 537

Query: 541  LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS 600
            +GSRVDYDAPG+SST MAYSADG RLFSCGTNKEGES+LVEWNESEGAVKRTY+GL KRS
Sbjct: 538  MGSRVDYDAPGNSSTTMAYSADGTRLFSCGTNKEGESHLVEWNESEGAVKRTYNGLAKRS 597

Query: 601  VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS 660
            VG V+FDTTKNRFLAA DEFMIKFWDMDNVNLL SIDA+GGL ASPCIRFNKEG LLAVS
Sbjct: 598  VGAVKFDTTKNRFLAAIDEFMIKFWDMDNVNLLTSIDAEGGLPASPCIRFNKEGTLLAVS 657

Query: 661  TNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERT 720
            TNDN IKILAN+DGIRLLRTVE+RTFDASR ASA++VK P IG F  ANA VGTS  ++ 
Sbjct: 658  TNDNSIKILANSDGIRLLRTVENRTFDASRAASASVVKPPPIGNFSPANAPVGTSGDDQA 717

Query: 721  APAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVS 780
            A AA MVGM++DSR+  DVKPKI DE+VEKSRIWKLTEI EPSQCRSLRLPD+LT+MRVS
Sbjct: 718  ALAAPMVGMNSDSRSLVDVKPKIQDESVEKSRIWKLTEINEPSQCRSLRLPDSLTSMRVS 777

Query: 781  RLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDT 840
            RLIYTNSG+AILALASNAVHKLWKW RN+RN +GKA  +  PQLWQP SGILMTNDISDT
Sbjct: 778  RLIYTNSGVAILALASNAVHKLWKWQRNDRNPSGKANASVPPQLWQPSSGILMTNDISDT 837

Query: 841  NPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNII 900
            NPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFM PPPAATFLAFHPQDNNII
Sbjct: 838  NPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMAPPPAATFLAFHPQDNNII 897

Query: 901  AIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWE 960
            AIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFS++LNVLVSSGADSQLCVWSTD WE
Sbjct: 898  AIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSHSLNVLVSSGADSQLCVWSTDAWE 957

Query: 961  KQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREAS 1020
            KQASKFL IP+GR A +LADTRVQFHLDQ HLLAVHETQIAI+EAPKLEC KQ+  +EAS
Sbjct: 958  KQASKFLQIPSGRVAPSLADTRVQFHLDQIHLLAVHETQIAIFEAPKLECQKQWFRQEAS 1017

Query: 1021 GPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNP-SLRVYPLVIAG 1079
            GPITHATYSCDSQSI+V+FE+GSV VLTASTLRLRCRI+ TAYLP NP SLRVYPLVIA 
Sbjct: 1018 GPITHATYSCDSQSIFVSFEDGSVVVLTASTLRLRCRISSTAYLPPNPSSLRVYPLVIAA 1077

Query: 1080 NPTDPNQFALGLTDGGVYIIEPLEAEGRWGTSPPNENGAGPSTTAGVAGAEQSQR 1134
            +P++P+QFALGLTDGGV+++EPLE+EG+WGTSPP ENGAGPS TAG AG+EQ+QR
Sbjct: 1078 HPSEPDQFALGLTDGGVHVLEPLESEGKWGTSPPVENGAGPSATAGAAGSEQAQR 1132

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142595|ref|XP_002324641.1| predicted protein [Populus trichocarpa] gi|222866075|gb|EEF03206.1| predicted protein [Populus trichocarpa]

 Score = 1987 bits (5147), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 956/1135 (84%), Positives = 1048/1135 (92%), Gaps = 10/1135 (0%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
            MSSLSRELVFLILQFL+EEKFKETVH+LEQ+SGF+FNMRYFE+MVTNGEWDEVEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLEEEKFKETVHRLEQESGFYFNMRYFEEMVTNGEWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVF+AFNE+LFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFAAFNEELFKEITQLLT 120

Query: 121  LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
            LENFRDNEQLSKYGDTKSARGIML ELKKLIEANPLFRDKLQFP+LKNSRLRTLINQSLN
Sbjct: 121  LENFRDNEQLSKYGDTKSARGIMLGELKKLIEANPLFRDKLQFPTLKNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQ 240
            WQHQLCK+PR+NPDIKTLFVDH+CGQPNGARAPSPVTN LMG VPK+G FP ++ HGPFQ
Sbjct: 181  WQHQLCKSPRSNPDIKTLFVDHSCGQPNGARAPSPVTNSLMGGVPKSGGFPSITGHGPFQ 240

Query: 241  PTPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQTA 300
            P PAALP+SLAGWMANPS       SAGP+ L  A N  AILK PRTPPTNN A+DYQTA
Sbjct: 241  PAPAALPSSLAGWMANPSA------SAGPLGL--APNNTAILKHPRTPPTNNPAIDYQTA 292

Query: 301  DSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVK 360
            DSEHVLKR RPFG+SDEVN L +NI+P+AYT Q+ GQ+SYS+DDLPK  VM LNQGSAVK
Sbjct: 293  DSEHVLKRPRPFGLSDEVN-LPINIMPMAYTSQNHGQNSYSSDDLPKNPVMALNQGSAVK 351

Query: 361  SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTAS 420
            SMDFHPVQQILL+VGTNMG+VM+WE+GSRERIA ++FKVW+L A S  LQASLS+DYTAS
Sbjct: 352  SMDFHPVQQILLLVGTNMGEVMVWELGSRERIAGRNFKVWDLNARSRALQASLSNDYTAS 411

Query: 421  VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSV 480
            VNRV WSPDGTLFGVAYSKHI+H+Y+YHGGD++RNHLE++AH G+VNDLAF+YPNKQL V
Sbjct: 412  VNRVAWSPDGTLFGVAYSKHIMHVYSYHGGDDIRNHLEMDAHNGNVNDLAFAYPNKQLVV 471

Query: 481  VTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN 540
            VTCG+DR I+VWDA+ GT+ + F GH++PVYS+CPHHKENIQFIFSTATDGKIKAWLYDN
Sbjct: 472  VTCGDDRTIRVWDAIVGTRLFNFVGHDAPVYSVCPHHKENIQFIFSTATDGKIKAWLYDN 531

Query: 541  LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS 600
             GSRVDY+APGHSST MAYSADG RLFSCGTNKEGES+LVEWNESEGAVKRTY+GL KRS
Sbjct: 532  AGSRVDYNAPGHSSTTMAYSADGTRLFSCGTNKEGESHLVEWNESEGAVKRTYNGLAKRS 591

Query: 601  VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS 660
             GVV+FDTTKNRFLAAGD+FMIKFWDMDN NLL +IDA+GGL ASPCIRFNKEG LLAVS
Sbjct: 592  GGVVKFDTTKNRFLAAGDDFMIKFWDMDNNNLLTTIDAEGGLPASPCIRFNKEGTLLAVS 651

Query: 661  TNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERT 720
            TNDN IKILAN+DGIRLLRTVESRTFDASR +SAA+ KAPAIGTF  ANA VGTS+  + 
Sbjct: 652  TNDNSIKILANSDGIRLLRTVESRTFDASRASSAAVAKAPAIGTFPPANATVGTSIDNQA 711

Query: 721  APAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVS 780
            APAA MVGM++D+R+  DVKPKI DE++EKSRIWKLTEI EPSQCRSLRLPD+LTAMRVS
Sbjct: 712  APAAPMVGMNSDNRSLVDVKPKIQDESIEKSRIWKLTEINEPSQCRSLRLPDSLTAMRVS 771

Query: 781  RLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDT 840
            RLI+TNSG+AILALASNAVHKLWKW RN+RN  GKAT +  PQLWQP SGILMTNDISDT
Sbjct: 772  RLIFTNSGVAILALASNAVHKLWKWQRNDRNLPGKATASVPPQLWQPSSGILMTNDISDT 831

Query: 841  NPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNII 900
            NPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFM PPPAATFLAFHPQDNNII
Sbjct: 832  NPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMAPPPAATFLAFHPQDNNII 891

Query: 901  AIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWE 960
            AIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFS++LNVLVSSGADSQLCVWSTD WE
Sbjct: 892  AIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSHSLNVLVSSGADSQLCVWSTDAWE 951

Query: 961  KQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREAS 1020
            KQASKFL IP GR AS+LADTRVQFHLDQ HLLAVHETQIAI+EAPKLECLKQ+ PREAS
Sbjct: 952  KQASKFLQIPTGRVASSLADTRVQFHLDQIHLLAVHETQIAIFEAPKLECLKQWFPREAS 1011

Query: 1021 GPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNP-SLRVYPLVIAG 1079
            GPITHATYSCDSQSIYV+FE+GSVGVLTASTLRLRCRIN TAYLP NP SLRVYPLVIA 
Sbjct: 1012 GPITHATYSCDSQSIYVSFEDGSVGVLTASTLRLRCRINSTAYLPPNPSSLRVYPLVIAA 1071

Query: 1080 NPTDPNQFALGLTDGGVYIIEPLEAEGRWGTSPPNENGAGPSTTAGVAGAEQSQR 1134
            +P++P+QFALGLTDGG++++EPLE+EG+WGTSPP ENGAGPST +G AG+EQ+QR
Sbjct: 1072 HPSEPDQFALGLTDGGIHVLEPLESEGKWGTSPPVENGAGPSTASGAAGSEQAQR 1126

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1134
TAIR|locus:2036204	1131	TPL "TOPLESS" [Arabidopsis tha	0.989	0.992	0.705	0.0
TAIR|locus:2086770	1131	TPR2 "TOPLESS-related 2" [Arab	0.973	0.976	0.598	0.0
TAIR|locus:2198888	1120	TPR1 "TOPLESS-related 1" [Arab	0.615	0.623	0.744	0.0
TAIR|locus:2040100	740	AT2G25420 "AT2G25420" [Arabido	0.313	0.479	0.407	7.6e-95
ASPGD|ASPL0000032162	1364	AN8468 [Emericella nidulans (t	0.254	0.211	0.271	5.4e-14
DICTYBASE|DDB_G0278353	530	smu1 "suppressor of mec-8 and	0.142	0.305	0.295	1.3e-13
ASPGD|ASPL0000038644	577	AN10391 [Emericella nidulans (	0.242	0.476	0.25	2.1e-11
UNIPROTKB|G4MUL1	317	MGG_07284 "Target-rapamycin co	0.209	0.750	0.280	2.2e-12
ASPGD|ASPL0000006405	1878	AN6960 [Emericella nidulans (t	0.223	0.134	0.256	1.2e-10
ZFIN|ZDB-GENE-031118-54	490	poc1b "POC1 centriolar protein	0.177	0.410	0.238	3e-11

TAIR|locus:2036204 TPL "TOPLESS" [Arabidopsis thaliana (taxid:3702)]

 Score = 4240 (1497.6 bits), Expect = 0., P = 0.
 Identities = 806/1143 (70%), Positives = 939/1143 (82%)

Query:     1 MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
             MSSLSRELVFLILQFLDEEKFKETVHKLEQ+SGFFFNM+YFED V NG WDEVEKYLSGF
Sbjct:     1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query:    61 TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
             TKVDDNRYSMKIFFEIRKQKYLEALDK DR KAV+ILVKDLKVFS FNE+LFKEITQLLT
Sbjct:    61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120

Query:   121 LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
             LENFR+NEQLSKYGDTKSAR IML ELKKLIEANPLFRDKLQFP+L+NSRLRTLINQSLN
Sbjct:   121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180

Query:   181 WQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQ 240
             WQHQLCKNPR NPDIKTLFVDH+CG PNGARAPSPV NPL+G +PKAG FPPL AHGPFQ
Sbjct:   181 WQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPFQ 240

Query:   241 PTPAALPTSLAGWMANPSPVPHPSPSAGPXXXXXXXXXXXXXKRPRTPPTNNSAMDYQTA 300
             PT + +PT LAGWM++PS VPHP+ SAG              K PRTPPTN S +DY +A
Sbjct:   241 PTASPVPTPLAGWMSSPSSVPHPAVSAG-AIALGGPSIPAALKHPRTPPTNAS-LDYPSA 298

Query:   301 DSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSY--STDDLPKTVVMTLNQGSA 358
             DSEHV KR+RP GISDEVN L VN+LP++++ Q+ G S    + DDLPKTV  TL+QGS+
Sbjct:   299 DSEHVSKRTRPMGISDEVN-LGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGSS 357

Query:   359 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT 418
               SMDFHP++Q LL+VGTN+GD+ LWEVGSRER+  K+FKVW+L  CSMPLQA+L  +  
Sbjct:   358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417

Query:   419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQL 478
              SVNRV+WSPDG+LFGVAYS+HIV LY+YHGG+++R HLEI+AHVG VND++FS PNKQL
Sbjct:   418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQL 477

Query:   479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLY 538
              V+TCG+D+ IKVWDA TG K++ FEGHE+PVYS+CPH+KENIQFIFSTA DGKIKAWLY
Sbjct:   478 CVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLY 537

Query:   539 DNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK 598
             DN+GSRVDYDAPG   T MAYSADG RLFSCGT+K+GES++VEWNESEGAVKRTY G  K
Sbjct:   538 DNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597

Query:   599 RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLA 658
             RS+GVVQFDTTKNR+LAAGD+F IKFWDMD V LL +ID DGGLQASP IRFNKEG LLA
Sbjct:   598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLLA 657

Query:   659 VSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLG- 717
             VS N+N IKI+AN+DG+RLL T E+ + ++S+         PAI +  +A A   TS G 
Sbjct:   658 VSGNENVIKIMANSDGLRLLHTFENISSESSK---------PAINSIAAAAAAAATSAGH 708

Query:   718 -ERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTA 776
              +R+A   ++ GM+ DSRN  DVKP I +E+ +KS+IWKLTE++EPSQCRSLRLP+NL  
Sbjct:   709 ADRSANVVSIQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLRV 768

Query:   777 MRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTND 836
              ++SRLI+TNSG AILALASNA+H LWKW RNERN+TGKAT +  PQ WQP SGILMTND
Sbjct:   769 AKISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGILMTND 828

Query:   837 ISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNXXXXXXXXXXXXXXXXXXXXXXHPQD 896
             +++TNPE+AVPCFALSKNDSYVMSASGGKISLFN                      HPQD
Sbjct:   829 VAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQD 888

Query:   897 NNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWST 956
             NNIIAIGM+DS+IQIYNVRVDEVK+KLKGH KRITGLAFSN LNVLVSSGAD+QLCVW+T
Sbjct:   889 NNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNT 948

Query:   957 DGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVP 1016
             DGWEKQ SK L +P GR  SA +DTRVQFH DQ H L VHETQ+AIYE  KLEC+KQ+  
Sbjct:   949 DGWEKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQWAV 1008

Query:  1017 REASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPS-LRVYPL 1075
             RE+  PITHAT+SCDSQ +Y +F + +V V +++ LRLRCR+NP+AYLP + S   V+PL
Sbjct:  1009 RESLAPITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSNVHPL 1068

Query:  1076 VIAGNPTDPNQFALGLTDGGVYIIEPLEAEGRWGTSPPNENGA--GPST--TAGVAGAEQ 1131
             VIA +P +PN FA+GL+DGGV+I EPLE+EG+WG +PP ENG+  G  T  + G + ++Q
Sbjct:  1069 VIAAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGASASDQ 1128

Query:  1132 SQR 1134
              QR
Sbjct:  1129 PQR 1131

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010072 "primary shoot apical meristem specification" evidence=IGI;IMP

GO:0009733 "response to auxin stimulus" evidence=IPI

GO:0010051 "xylem and phloem pattern formation" evidence=IGI

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IMP

TAIR|locus:2086770 TPR2 "TOPLESS-related 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 3445 (1217.8 bits), Expect = 0., P = 0.
 Identities = 695/1161 (59%), Positives = 842/1161 (72%)

Query:     1 MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
             MSSLSRELVFLILQFLDEEKFKE+VHKLEQ+SGFFFN++YFE+    GEWDEVEKYLSGF
Sbjct:     1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60

Query:    61 TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
             TKVDDNRYSMKIFFEIRKQKYLEALD+ DRAKAVEIL KDLKVF+ FNE+L+KEITQLLT
Sbjct:    61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120

Query:   121 LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
             LENFR+NEQLSKYGDTKSAR IM  ELKKLIEANPLFR+KL FPS K SRLRTLINQSLN
Sbjct:   121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180

Query:   181 WQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHG-PF 239
             WQHQLCKNPR NPDIKTLF+DH+C   NGARA +PV  P+  AV +   F PL  HG PF
Sbjct:   181 WQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPV-AAVARPSNFVPLGVHGGPF 239

Query:   240 QPTPAALPTS--LAGWMANPSP---VPHPSPSAGPXXXXXXXXXXXXXKRPRTPPTNNSA 294
             Q  PA  P +  LAGWMANP+P   VP    +A P             K PR P  +   
Sbjct:   240 QSNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQVNEL--KHPRAPSNSLGL 297

Query:   295 MDYQTADSEHVLKRSRPFGISDEVNNLSVNILPV-AYTPQSLGQSSYSTDDLPKTVVMTL 353
             MDYQ+AD E ++KR R    S+EV        P  ++ P SL       DDLP+ VV T+
Sbjct:   298 MDYQSADHEQLMKRLRSAQTSNEVT------YPAHSHPPASL-------DDLPRNVVSTI 344

Query:   354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASL 413
              QGS V SMDFHP    LL VG + G+V LWEVGSRE++  + FK+W + ACS+  Q S+
Sbjct:   345 RQGSVVISMDFHPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSI 404

Query:   414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY 473
               + + SV RV WSPDG L GV+++KH++H+Y Y G D LR HLEI+AHVG VNDLAF++
Sbjct:   405 VKEPSISVTRVAWSPDGNLLGVSFTKHLIHVYAYQGSD-LRQHLEIDAHVGCVNDLAFAH 463

Query:   474 PNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKI 533
             PNKQ+ VVTCG+D++IKVWD ++G K + FEGHE+PVYSICPH KENIQFIFSTA DGKI
Sbjct:   464 PNKQMCVVTCGDDKLIKVWD-LSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKI 522

Query:   534 KAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTY 593
             KAWLYDN+GSRVDYDAPG   T M YSADG+RLFSCGT+KEG+S+LVEWNESEGA+KRTY
Sbjct:   523 KAWLYDNVGSRVDYDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTY 582

Query:   594 HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE 653
              G  K+S GVVQFDTT+NRFLA G++  IKFW+MDN NLL  ++A+GGL   P +RFNK+
Sbjct:   583 LGFRKKSAGVVQFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKD 642

Query:   654 GILLAVSTNDNGIKILANADGIRLLRTVESRTFDASR------VASAAIVKA--PAIGTF 705
             G LLAV+T DNG KILAN DG+R LR  E+R+F+AS+      V+++A+  +  PAIG  
Sbjct:   643 GNLLAVTTADNGFKILANTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSISPAIGKI 702

Query:   706 GSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQC 765
                +A      G    P     G+   SR  T  KP+  D +V+KS+  +LTEI +P+QC
Sbjct:   703 EHMDA------GSPARPTPIPNGIEAMSR--TMEKPRNLD-SVDKSKPLELTEIVDPTQC 753

Query:   766 RSLRLPDNLTAM-RVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQL 824
             R + +PD+  ++ +V+RL+YTNSG+ +LAL SN V +LWKW RNE+N TGKAT +  PQ 
Sbjct:   754 RQVTMPDSKDSVSKVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQH 813

Query:   825 WQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNXXXXXXXXXXXXXX 884
             WQP SG+LM ND+ + NPE +VPC ALSKNDSYVMSA GGK+SLFN              
Sbjct:   814 WQPNSGLLMANDVPE-NPEGSVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPP 872

Query:   885 XXXXXXXXHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVS 944
                     HPQDNNIIAIGMEDSSI IYNVRVDEVKTKLKGHQK ITGLAFS  LN+LVS
Sbjct:   873 PASTFLAFHPQDNNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVS 932

Query:   945 SGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYE 1004
             SGAD+QL  W+ D WEK+ S  + +P G+  + + DTRVQFH DQ  LL  HETQ+AIY+
Sbjct:   933 SGADAQLFFWTADSWEKKKSSAIQLPPGK--APVGDTRVQFHNDQIQLLVSHETQLAIYD 990

Query:  1005 APKLECLKQFVPREA-SGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAY 1063
             A K+EC+ ++VP+EA S PIT A+YSC+SQ +Y +F +G++ V  A +LRLRCRI P+AY
Sbjct:   991 ASKMECIHKWVPQEALSSPITSASYSCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAY 1050

Query:  1064 LP--TNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGRWGTSPP-------N 1114
             +P  T  S  ++P VI  +P +PNQ A+GL+DG V +IEP E   RWG            
Sbjct:  1051 MPQPTPNSAPIFPQVITAHPQEPNQLAVGLSDGSVKVIEPSELSRRWGVGVAAGSDKAGT 1110

Query:  1115 ENGA-GPSTTAGVAGAEQSQR 1134
             ENG    S+ A  + ++Q QR
Sbjct:  1111 ENGRPSSSSAANNSSSDQIQR 1131

GO:0005634 "nucleus" evidence=ISM

GO:0010072 "primary shoot apical meristem specification" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

TAIR|locus:2198888 TPR1 "TOPLESS-related 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 2785 (985.4 bits), Expect = 0., Sum P(2) = 0.
 Identities = 525/705 (74%), Positives = 602/705 (85%)

Query:     1 MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
             MSSLSRELVFLILQFLDEEKFKETVHKLEQ+SGFFFNM+YFED V NG WDEVEKYLSGF
Sbjct:     1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query:    61 TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
             TKVDDNRYSMKIFFEIRKQKYLEALD+ DR KAV+ILVKDLKVFS FNE+LFKEITQLLT
Sbjct:    61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120

Query:   121 LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
             LENFR+NEQLSKYGDTKSAR IML ELKKLIEANPLFRDKLQFP+L+ SRLRTLINQSLN
Sbjct:   121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180

Query:   181 WQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQ 240
             WQHQLCKNPR NPDIKTLFVDH+C  PN ARAPSPV NPL+G++PKA  FPPL AHGPFQ
Sbjct:   181 WQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPFQ 240

Query:   241 PTPAALPTSLAGWMANPSPVPHPSPSAGPXXXXXXXXXXXXXKRPRTPPTNNSAMDYQTA 300
             PTP+ +PT LAGWM++PS VPHP+ S GP             K PRTPP+N SA+DY + 
Sbjct:   241 PTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSIQAAL-KHPRTPPSN-SAVDYPSG 298

Query:   301 DSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLG--QSSYSTDDLPKTVVMTLNQGSA 358
             DS+HV KR+RP GISDEV+ L VN+LP+ +  Q+ G  Q+  + DDLPKTV  TL+QGS+
Sbjct:   299 DSDHVSKRTRPMGISDEVS-LGVNMLPMTFPGQAHGHNQTFKAPDDLPKTVARTLSQGSS 357

Query:   359 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT 418
               SMDFHP++Q LL+VGTN+GD+ LWEVGSRER+  K+FKVW+L  CSMPLQA+L  +  
Sbjct:   358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417

Query:   419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQL 478
              SVNRV+WSPDG+LFGVAYS+HIV LY+YHGG+++R HLEI+AHVG VND+AFS PNKQL
Sbjct:   418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQL 477

Query:   479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLY 538
              V TCG+D+ IKVWDA TG K+Y FEGHE+PVYSICPH+KENIQFIFSTA DGKIKAWLY
Sbjct:   478 CVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLY 537

Query:   539 DNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK 598
             DN+GSRVDY+APG   T MAYSADG RLFSCGT+K+GES++VEWNESEGAVKRTY G  K
Sbjct:   538 DNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597

Query:   599 RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLA 658
             RS+GVVQFDTTKNR+LAAGD+F IKFWDMD + LL +IDADGGLQASP IRFNKEG LLA
Sbjct:   598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSLLA 657

Query:   659 VSTNDNGIKILANADGIRLLRTVESRTFDASRVA--SAAIVKAPA 701
             VS NDN IK++AN+DG+RLL TVE+ + ++S+ A  S  +V+ PA
Sbjct:   658 VSANDNMIKVMANSDGLRLLHTVENLSSESSKPAINSIPMVERPA 702

GO:0005634 "nucleus" evidence=ISM

GO:0010072 "primary shoot apical meristem specification" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2040100 AT2G25420 "AT2G25420" [Arabidopsis thaliana (taxid:3702)]

 Score = 639 (230.0 bits), Expect = 7.6e-95, Sum P(2) = 7.6e-95
 Identities = 151/371 (40%), Positives = 213/371 (57%)

Query:   755 KLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTG 814
             K  EI +PSQC +L LPD  +  +++RL Y+ SG  ILALA +A HKLW W  ++ N   
Sbjct:   368 KPNEIKDPSQCNALVLPDCFSEEKIARLTYSPSGDYILALAEDATHKLWTWSSSQ-NEFC 426

Query:   815 KATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNXXXX 874
             K      P+L QP SG  M N+++ T+ + +  CFA+    SY+ S SGGKI++F+    
Sbjct:   427 KENVYPKPRLHQPQSGKTMENEMA-TSVQKSTSCFAVK--GSYLFSTSGGKIAVFDLKNF 483

Query:   875 XXXXXXXXXXXXXXXXXXHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLA 934
                                P D  ++A+G++D SI I+ +   +VK KL+GH ++IT LA
Sbjct:   484 EKVASFGSPTPMATYFIFIPGD--LLAVGLDDGSIFIHCLSSRKVKEKLEGHDQKITCLA 541

Query:   935 FSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLT---IPNGRTASALADTRVQFHLDQTH 991
             FS   NVLVSS +D +LC+WST  W K  SK  T          S    T +QF   Q  
Sbjct:   542 FSRCFNVLVSSDSDGKLCLWSTKSWVKLTSKNSTRKFCNRSNLESTSLVTHIQFDPYQIE 601

Query:   992 LLAVHETQIAIYEAPKLECLKQFVPREASGP-ITHATYSCDSQSIYVAFEEGSVGVLTAS 1050
             LL VH+  I +YE   L+C  Q++P +AS P IT ATYS D + IYV F  GS+ ++ + 
Sbjct:   602 LLVVHDGWIGLYEVRTLDCRLQWIP-DASDPAITSATYSSDGEIIYVGFRCGSIKIVDSK 660

Query:  1051 TLRLRCRINPTAY--LPT-NPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGR 1107
             T    C+IN T++  L T N SL VYP V+A +P+ PNQ + GL++G V +++PL + G 
Sbjct:   661 TFMTLCQINLTSFTQLSTSNISLEVYPTVVAAHPSHPNQISAGLSNGKVIVLQPLWSGG- 719

Query:  1108 WGTSPPNE-NG 1117
             WG + P E NG
Sbjct:   720 WGEAAPLEDNG 730

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)]

 Score = 211 (79.3 bits), Expect = 5.4e-14, Sum P(2) = 5.4e-14
 Identities = 85/313 (27%), Positives = 141/313 (45%)

Query:   396 SFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRN 455
             + KVW     +  LQ SL    +  V  V +SPDG        K+ V L+    G+ L+ 
Sbjct:   899 TIKVWN--PATGELQQSLEGR-SGWVKSVAFSPDGKKLASGSEKNTVKLWNPATGELLQT 955

Query:   456 HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICP 515
                +E H  SV  +AFS   KQL+  +   D  IK+W++ TG  Q  F+GH+  + ++  
Sbjct:   956 ---LEGHSQSVRSVAFSPDGKQLA--SSSSDTTIKLWNSTTGELQQTFKGHDLWIRAVA- 1009

Query:   516 HHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTM--MAYSADGARLFSCGTNK 573
                 + + + S + D  IK W  D   S +      HS ++  +A+S D  +L S     
Sbjct:  1010 -FSPDGKHLVSGSDDNTIKLW--DLATSELQQSLEDHSRSVHAVAFSPDDKQLASSSL-- 1064

Query:   574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGD-EFMIKFWDMDNVNL 632
               +S +  W+ + G ++RT  G   + V  V F +   + LA+   +  IK W+     L
Sbjct:  1065 --DSTIKLWDSATGELQRTLEG-HSQGVRSVTF-SPDGKLLASNSYDGTIKLWNPLTGEL 1120

Query:   633 LASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVA 692
               ++        S  + F+ +G  LA    D+ IK+  +A G  LL+T+E  +     V 
Sbjct:  1121 QQTLTGRSDWVDS--VAFSPDGKQLASGYYDSTIKLWDSATG-ELLQTLEGHSDRIQSVV 1177

Query:   693 SAAIVKAPAIGTF 705
              +   K  A G++
Sbjct:  1178 FSPDGKLLASGSY 1190

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0278353 smu1 "suppressor of mec-8 and unc-52-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 119 (46.9 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
 Identities = 55/186 (29%), Positives = 85/186 (45%)

Query:     5 SRELVFLILQFLDEEKFKETVHKLEQDSGFFFNM----RYFEDMVTNGEWDEVEKYLSGF 60
             S++++ LILQFL E     ++  L++++G   N       F + V NG WD V       
Sbjct:    16 SQDVIKLILQFLKENSLGNSLTALQEETGINLNAVDSKETFLNDVKNGNWDSV------L 69

Query:    61 TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
             T V   R S  +  ++ +Q  +E L      K  E+    ++     N     +  + L 
Sbjct:    70 TVVSTLRLSTTLLMDLYEQ-IVELL----HLKEYELCKYLIRKTEPLNYMKLNQQERYLK 124

Query:   121 LENFRDNEQLSKYGDTKSARGIMLAELKK-LIEANPLFRDKLQFPSLKNSRLRTLINQSL 179
             LEN    E +   GD     GI   + +K LIE   L  + +  PS   SRL +L++QSL
Sbjct:   125 LENHLQREYID-LGDFYKY-GITTEKRRKQLIEQ--LNNEIITVPS---SRLLSLLSQSL 177

Query:   180 NWQ-HQ 184
             +WQ HQ
Sbjct:   178 HWQKHQ 183

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ASPGD|ASPL0000038644 AN10391 [Emericella nidulans (taxid:162425)]

 Score = 193 (73.0 bits), Expect = 2.1e-11, P = 2.1e-11
 Identities = 75/300 (25%), Positives = 130/300 (43%)

Query:   417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
             + A+V  V +S D  L   A     V ++    G  L++ LE   H   V  + FS+ ++
Sbjct:   295 HEAAVLSVSYSHDSRLLASASDDRTVKIWDTETGS-LQHTLE--GHSDLVRSVIFSHDSR 351

Query:   477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
              L+  +   D  +K+WD  TG+ Q+  EGH   V S+   H    Q + S + D  +K W
Sbjct:   352 LLASAS---DSTVKIWDTGTGSLQHTLEGHRDWVRSVIFSHDS--QLLASASDDSTVKIW 406

Query:   537 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
               D     + +   GH   + +  +S D   L S       +S +  W+   G+++ T  
Sbjct:   407 --DTGTGSLQHTLEGHRDWVRSVIFSHDSQLLASASD----DSTVKIWDTGTGSLQHTLE 460

Query:   595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654
             G  +  V  V F        +A D+  ++ WD +  +   +++    L  S  + F+ + 
Sbjct:   461 G-HRDWVRSVIFSHDSRLLASASDDRTVRIWDTEKGSHKHTLEGHSSLVTS--VSFSHDS 517

Query:   655 ILLAVSTNDNGIKIL-ANADGIR----LLRTVESRTFD-ASRVASAAIVKAPAIGTFGSA 708
              LLA ++ND  ++I    A  ++    L  T+E+  FD A+ +     VKA      G A
Sbjct:   518 RLLASASNDQTVRIWDIEARSLQHTFDLDATIEAMRFDKATSLWIQVTVKASIRSAMGMA 577

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|G4MUL1 MGG_07284 "Target-rapamycin complex subunit LST8" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 190 (71.9 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
 Identities = 75/267 (28%), Positives = 111/267 (41%)

Query:   396 SFKVWEL--GACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDEL 453
             + + WE   G CS  +Q     D  + VNR+  SPD      A   H V LY     +  
Sbjct:    13 TIRFWEALSGICSRTIQ---HPD--SQVNRLCISPDKRFLAAA-GHHTVKLYDIKSTNP- 65

Query:   454 RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 513
                L  E H G+V  +AF    K +  VT  ED  +K+W+  TGT Q  +  H+SPV  +
Sbjct:    66 NALLTFEGHTGNVTGVAFHCEGKWM--VTSSEDGTVKIWETRTGTIQRSYN-HQSPVNDV 122

Query:   514 CPHHKENIQFIFSTATDGKIKAW-LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 572
               H  +    I S    G I+ W L DN  +         S + +  + DG+ L  C  N
Sbjct:   123 VIHPNQGE--IISCDRAGTIRLWDLADNKCTSEMVPEEDVSVSSLTVATDGSLL--CAAN 178

Query:   573 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQF---DTTKNRFLAAGDEFMIKFWDMDN 629
               G  ++  W  S+G ++RT       +  + QF   D    R L + D   +     D+
Sbjct:   179 NRGNVFV--WTLSQG-LERTI------ATAMTQFSAHDQYITRVLLSPDVKKLATCSADH 229

Query:   630 VNLLASIDADGGLQASPCIRFNKEGIL 656
                +  +D +  LQA   + F  E  L
Sbjct:   230 TAKIWEVDVEPTLQAGKAVPFELEATL 256

GO:0000139 "Golgi membrane" evidence=ISS

GO:0001558 "regulation of cell growth" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0010008 "endosome membrane" evidence=ISS

GO:0030295 "protein kinase activator activity" evidence=ISS

GO:0030950 "establishment or maintenance of actin cytoskeleton polarity" evidence=ISS

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=ISS

GO:0031505 "fungal-type cell wall organization" evidence=ISS

GO:0031930 "mitochondria-nucleus signaling pathway" evidence=ISS

GO:0031931 "TORC1 complex" evidence=ISS

GO:0031932 "TORC2 complex" evidence=ISS

GO:0045860 "positive regulation of protein kinase activity" evidence=ISS

ASPGD|ASPL0000006405 AN6960 [Emericella nidulans (taxid:162425)]

 Score = 211 (79.3 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
 Identities = 71/277 (25%), Positives = 129/277 (46%)

Query:   398 KVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHL 457
             K+W+    S  LQ  L   +   VN V +SPD  L   A     V ++    G   R   
Sbjct:   414 KIWDTRTGS--LQNVLEG-HDDCVNSVSFSPDSRLLASASDDRTVKIWHAATGSLQRT-- 468

Query:   458 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHH 517
              +E H   V  + FS+ ++ ++  +  +D  +K+WD  T   Q   E H++ V S+   H
Sbjct:   469 -LEGHNDWVRSVVFSHDSRLIA--SASDDMTVKIWDTATVPLQNNLESHDNWVRSVVFSH 525

Query:   518 KENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTM--MAYSADGARLFSCGTNKEG 575
                +  + S + D  +K W  D     ++    GH   +  +++S D +RL +  ++ +G
Sbjct:   526 DSRL--LASASDDMTVKIW--DTATGSLENTLEGHDDRVNSVSFSPD-SRLLASASD-DG 579

Query:   576 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLAS 635
                +  W  + G V+ T+ G G+ ++ +  F  T N   +A D+  +K WDM+  +L  +
Sbjct:   580 TVKI--WYAATGTVQHTFDGSGRVAISLA-FSHTSNLLASAMDDGTVKIWDMEIYSLRHT 636

Query:   636 IDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 672
              D D  +Q    I+F+K   + ++ TN   I++ A +
Sbjct:   637 FDLDHEIQR---IQFDKS--MSSLITNVGRIQLDARS 668

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030001 "metal ion transport" evidence=IEA

GO:0046873 "metal ion transmembrane transporter activity" evidence=IEA

ZFIN|ZDB-GENE-031118-54 poc1b "POC1 centriolar protein homolog B (Chlamydomonas)" [Danio rerio (taxid:7955)]

 Score = 140 (54.3 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
 Identities = 52/218 (23%), Positives = 93/218 (42%)

Query:   453 LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS 512
             L  H +    V S  D  F+  NKQL+  +C  D+ + +W+     + + F GH   +  
Sbjct:    10 LERHFKGHKDVISCAD--FNPNNKQLATGSC--DKSLMIWNLAPKARAFRFVGHTDVITG 65

Query:   513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 572
             +  +   +   + S++ D  ++ W     G    + A   S   + +S DG RL +   +
Sbjct:    66 V--NFAPSGSLVASSSRDQTVRLWTPSIKGESTVFKAHTASVRSVHFSRDGQRLVTASDD 123

Query:   573 KEGESYLVEWNESEGAVKRTYHGLGKRS--VGVVQFDTTKNRFLAAGDEFMIKFWDMDNV 630
             K  + + VE        K+  + L + +  V   +F        + GD+  ++ WD  + 
Sbjct:   124 KSVKVWGVER-------KKFLYSLNRHTNWVRCARFSPDGRLIASCGDDRTVRLWDTSSH 176

Query:   631 NLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKI 668
               + +I  D G  A+  + FN  G  +A S  DN IKI
Sbjct:   177 QCI-NIFTDYGGSAT-FVDFNSSGTCIASSGADNTIKI 212

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0042384 "cilium assembly" evidence=ISS

GO:0060287 "epithelial cilium movement involved in determination of left/right asymmetry" evidence=IMP

GO:0060271 "cilium morphogenesis" evidence=IMP

GO:0003014 "renal system process" evidence=IMP

GO:0030030 "cell projection organization" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WV90	TPR1_ARATH	No assigned EC number	0.7212	0.9814	0.9937	no	no
Q94AI7	TPL_ARATH	No assigned EC number	0.7279	0.9894	0.9920	no	no
Q27GK7	TPR4_ARATH	No assigned EC number	0.7469	0.9973	0.9964	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1134
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-32
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-22
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-21
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-19
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-17
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-16
smart00668	58	smart00668, CTLH, C-terminal to LisH motif	3e-15
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-15
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-13
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-11
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-09
smart00320	40	smart00320, WD40, WD40 repeats	4e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-05
smart00320	40	smart00320, WD40, WD40 repeats	6e-05
smart00667	34	smart00667, LisH, Lissencephaly type-1-like homolo	7e-05
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	2e-04
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.001
smart00320	40	smart00320, WD40, WD40 repeats	0.003
pfam10607	144	pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  127 bits (320), Expect = 4e-32
 Identities = 73/315 (23%), Positives = 122/315 (38%), Gaps = 40/315 (12%)

Query: 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSD 416
             V  + F P  ++L     +                  + KVW+L   +  L  +L   
Sbjct: 10  GGVTCVAFSPDGKLLATGSGD-----------------GTIKVWDL--ETGELLRTLKG- 49

Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
           +T  V  V  S DGT      S   + L+    G+ +R    +  H   V+ +AFS P+ 
Sbjct: 50  HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFS-PDG 105

Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
           ++ + +   D+ IKVWD  TG       GH   V S+         F+ S++ DG IK W
Sbjct: 106 RI-LSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG--TFVASSSQDGTIKLW 162

Query: 537 LYDNLGSRVDYDAPGHSS--TMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
             D    +      GH+     +A+S DG +L S  ++  G   L  W+ S G    T  
Sbjct: 163 --DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD--GTIKL--WDLSTGKCLGTLR 216

Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA-DGGLQASPCIRFNKE 653
           G       V  F        +  ++  I+ WD+     + ++      +     + ++ +
Sbjct: 217 GHENGVNSVA-FSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVT---SLAWSPD 272

Query: 654 GILLAVSTNDNGIKI 668
           G  LA  + D  I+I
Sbjct: 273 GKRLASGSADGTIRI 287

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  102 bits (254), Expect = 1e-22
 Identities = 80/373 (21%), Positives = 143/373 (38%), Gaps = 35/373 (9%)

Query: 306 LKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYS-------TDDLPKTVVMTLNQGSA 358
              ++   +       S+N L +     S                    + ++      +
Sbjct: 8   SSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDS 67

Query: 359 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT 418
           + S+ F P  ++LL   ++ G + LW++ + E++                   SL   + 
Sbjct: 68  ITSIAFSPDGELLLSGSSD-GTIKLWDLDNGEKL-----------------IKSLEGLHD 109

Query: 419 ASVNRV-MWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQ 477
           +SV+++ + SPDG    +A S     +  +      +    +E H  SV  LAFS P+ +
Sbjct: 110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFS-PDGK 168

Query: 478 LSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWL 537
           L       D  IK+WD  TG       GH  PV S+       +  I S ++DG I+ W 
Sbjct: 169 LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGL-LIASGSSDGTIRLWD 227

Query: 538 YDNLGSRVDYDAPGHS-STMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL 596
               G  +     GHS S + ++S DG+ L S     +G   L  W+    +        
Sbjct: 228 LST-GKLLRSTLSGHSDSVVSSFSPDGSLLASGS--SDGTIRL--WDLRSSSSLLRTLSG 282

Query: 597 GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGIL 656
              SV  V F        +   +  ++ WD++   LL+S+   G       + F+ +G L
Sbjct: 283 HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSL 342

Query: 657 LAVS-TNDNGIKI 668
           L    ++D  I++
Sbjct: 343 LVSGGSDDGTIRL 355

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 95.5 bits (238), Expect = 2e-21
 Identities = 51/206 (24%), Positives = 83/206 (40%), Gaps = 37/206 (17%)

Query: 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAV---------------------- 394
           S V S+ F P  +IL     +   + +W+V + + +                        
Sbjct: 94  SYVSSVAFSPDGRILSSSSRD-KTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVAS 152

Query: 395 ----KSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGG 450
                + K+W+L        A+L+  +T  VN V +SPDG     + S   + L+    G
Sbjct: 153 SSQDGTIKLWDLRTGK--CVATLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG 209

Query: 451 DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV 510
             L     +  H   VN +AFS P+  L + +  ED  I+VWD  TG       GH + V
Sbjct: 210 KCLG---TLRGHENGVNSVAFS-PDGYL-LASGSEDGTIRVWDLRTGECVQTLSGHTNSV 264

Query: 511 YSICPHHKENIQFIFSTATDGKIKAW 536
            S+      + + + S + DG I+ W
Sbjct: 265 TSLAWS--PDGKRLASGSADGTIRIW 288

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 88.9 bits (221), Expect = 4e-19
 Identities = 57/220 (25%), Positives = 88/220 (40%), Gaps = 23/220 (10%)

Query: 455 NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI- 513
               ++ H G V  +AFS   K L   T   D  IKVWD  TG      +GH  PV  + 
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLL--ATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVA 58

Query: 514 -CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMM--AYSADGARLFSCG 570
                     ++ S ++D  I+ W  +           GH+S +   A+S DG  L S  
Sbjct: 59  ASADGT----YLASGSSDKTIRLWDLETGECVRTLT--GHTSYVSSVAFSPDGRILSSSS 112

Query: 571 TNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDN 629
            +K     +  W+   G    T  G     V  V F      F+A+   +  IK WD+  
Sbjct: 113 RDKT----IKVWDVETGKCLTTLRG-HTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRT 166

Query: 630 VNLLASIDA-DGGLQASPCIRFNKEGILLAVSTNDNGIKI 668
              +A++    G +     + F+ +G  L  S++D  IK+
Sbjct: 167 GKCVATLTGHTGEVN---SVAFSPDGEKLLSSSSDGTIKL 203

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 84.8 bits (208), Expect = 6e-17
 Identities = 80/359 (22%), Positives = 137/359 (38%), Gaps = 47/359 (13%)

Query: 304 HVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTV----------VMTL 353
            +   S P  +   +   S ++  +A++P   G+   S   L  T+          + TL
Sbjct: 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPD--GKLLASGSSLDGTIKLWDLRTGKPLSTL 194

Query: 354 -NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQAS 412
                 V S+ F P   +L+  G++ G + LW++ + + +                   S
Sbjct: 195 AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLR------------------S 236

Query: 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFS 472
             S ++ SV    +SPDG+L     S   + L+       L   L    H  SV  +AFS
Sbjct: 237 TLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLS--GHSSSVLSVAFS 293

Query: 473 YPNKQLSVVTCGEDRVIKVWDAVTGTKQYI--FEGHESPVYSICPHHKENIQFIFSTATD 530
              K L   +   D  +++WD  TG        +GHE PV S+     +    +   + D
Sbjct: 294 PDGKLL--ASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS-FSPDGSLLVSGGSDD 350

Query: 531 GKIKAWLYDNLGSRVDYDAPGHSSTM-MAYSADGARLFSCGTNKEGESYLVEWNESEGAV 589
           G I+ W       +      GHS+ + +++S DG  + S  T+      +  W+ S G++
Sbjct: 351 GTIRLWDLRT--GKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGT----VRLWDLSTGSL 404

Query: 590 KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCI 648
            R   G   R V  + F        +   +  I+ WD+       S   DG + AS   
Sbjct: 405 LRNLDGHTSR-VTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKSS 462

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 81.2 bits (201), Expect = 1e-16
 Identities = 41/206 (19%), Positives = 83/206 (40%), Gaps = 13/206 (6%)

Query: 843  EDAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIA 901
               V C A S +   + + SG G I ++++ T + + T          +A       + +
Sbjct: 9    TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLAS 68

Query: 902  IGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEK 961
                D +I+++++   E    L GH   ++ +AFS    +L SS  D  + VW  +    
Sbjct: 69   GSS-DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE---- 123

Query: 962  QASKFLTIPNGRTASALADTRVQFHLDQTHLL-AVHETQIAIYEAPKLECLKQFVPREAS 1020
               K LT   G T    +   V F  D T +  +  +  I +++    +C+         
Sbjct: 124  -TGKCLTTLRGHTDWVNS---VAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHT-- 177

Query: 1021 GPITHATYSCDSQSIYVAFEEGSVGV 1046
            G +    +S D + +  +  +G++ +
Sbjct: 178  GEVNSVAFSPDGEKLLSSSSDGTIKL 203

Length = 289

>gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif

 Score = 70.7 bits (174), Expect = 3e-15
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 34 FFFNMRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAK 92
           F   +   +++  G+WDE  ++LS        R S K+ FE+RKQK+LE + +    +
Sbjct: 1  EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKLEE 58

Alpha-helical motif of unknown function. Length = 58

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 76.2 bits (188), Expect = 7e-15
 Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 2/114 (1%)

Query: 843 EDAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIA 901
              V   A S +   ++S+S  G I L+++ T K + T          +AF P D  ++A
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLA 235

Query: 902 IGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 955
            G ED +I+++++R  E    L GH   +T LA+S     L S  AD  + +W 
Sbjct: 236 SGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 71.6 bits (176), Expect = 3e-13
 Identities = 44/204 (21%), Positives = 83/204 (40%), Gaps = 13/204 (6%)

Query: 843  EDAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIA 901
               V   A S +   + S+S    I ++++ T K +TT          +AF P D   +A
Sbjct: 93   TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVA 151

Query: 902  IGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEK 961
               +D +I+++++R  +    L GH   +  +AFS     L+SS +D  + +W       
Sbjct: 152  SSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS---- 207

Query: 962  QASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQ-IAIYEAPKLECLKQFVPREAS 1020
               K L    G      +   V F  D   L +  E   I +++    EC++       +
Sbjct: 208  -TGKCLGTLRGHENGVNS---VAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL--SGHT 261

Query: 1021 GPITHATYSCDSQSIYVAFEEGSV 1044
              +T   +S D + +     +G++
Sbjct: 262  NSVTSLAWSPDGKRLASGSADGTI 285

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 68.6 bits (166), Expect = 7e-12
 Identities = 57/245 (23%), Positives = 94/245 (38%), Gaps = 11/245 (4%)

Query: 452 ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY--IFEGHESP 509
              + L +  H  S+  +AFS   + L  ++   D  IK+WD   G K    +   H+S 
Sbjct: 54  PDLSSLLLRGHEDSITSIAFSPDGELL--LSGSSDGTIKLWDLDNGEKLIKSLEGLHDSS 111

Query: 510 VYSICPHHKE-NIQFIFSTATDGKIKAWLYDNLGSRV-DYDAPGHSSTMMAYSADGARLF 567
           V  +     + N   + S++ DG +K W     G  +   +    S T +A+S DG  L 
Sbjct: 112 VSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLA 171

Query: 568 SCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDM 627
           S  +       +  W+   G    T  G       +           +   +  I+ WD+
Sbjct: 172 SGSSLD---GTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL 228

Query: 628 DNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFD 687
               LL S  +  G   S    F+ +G LLA  ++D  I++        LLRT+   +  
Sbjct: 229 STGKLLRSTLS--GHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS 286

Query: 688 ASRVA 692
              VA
Sbjct: 287 VLSVA 291

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 80/393 (20%), Positives = 160/393 (40%), Gaps = 32/393 (8%)

Query: 598 KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN-VNLLASIDADGGLQASPCIRFNKEG-- 654
           + S+  + F       L+   +  IK WD+DN   L+ S++       S     + +G  
Sbjct: 65  EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNS 124

Query: 655 ILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGT 714
           ILLA S+ D  +K+   +   +L+RT+E  +   + +A +   K  A G   S +  +  
Sbjct: 125 ILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASG--SSLDGTIKL 182

Query: 715 SLGERTAPAAAMVGMSND--SRNFTDVKPKIADEAVEKS--RIWKLTEITEPSQCRSLRL 770
                  P + + G ++   S  F+     +          R+W L+         S   
Sbjct: 183 WDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS 242

Query: 771 PDNLTA----------------MRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTG 814
              +++                +R+  L  ++S L  L+  S++V  +   P  +  ++G
Sbjct: 243 DSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302

Query: 815 KATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASG--GKISLFNMM 872
             +++   +LW   +G L  + ++    E  V   + S + S ++S     G I L+++ 
Sbjct: 303 --SSDGTVRLWDLETGKL-LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR 359

Query: 873 TFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITG 932
           T K + T          ++F P D  +++ G  D +++++++    +   L GH  R+T 
Sbjct: 360 TGKPLKTLEGHSNV-LSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTS 417

Query: 933 LAFSNTLNVLVSSGADSQLCVWSTDGWEKQASK 965
           L FS     L S  +D+ + +W      K  S 
Sbjct: 418 LDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 61.2 bits (149), Expect = 7e-10
 Identities = 42/181 (23%), Positives = 71/181 (39%), Gaps = 16/181 (8%)

Query: 503 FEGHESPVYSICPHHKENIQFIFSTATDGKIKAW-LYDNLGSRVDYDAPGHSSTMM--AY 559
            +GH   V  +      + + + + + DG IK W L      R      GH+  +   A 
Sbjct: 5   LKGHTGGVTCVAFS--PDGKLLATGSGDGTIKVWDLETGELLRTLK---GHTGPVRDVAA 59

Query: 560 SADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE 619
           SADG  L S  ++K     +  W+   G   RT  G     V  V F        ++  +
Sbjct: 60  SADGTYLASGSSDK----TIRLWDLETGECVRTLTGHTS-YVSSVAFSPDGRILSSSSRD 114

Query: 620 FMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLR 679
             IK WD++    L ++   G       + F+ +G  +A S+ D  IK+  +    + + 
Sbjct: 115 KTIKVWDVETGKCLTTL--RGHTDWVNSVAFSPDGTFVASSSQDGTIKL-WDLRTGKCVA 171

Query: 680 T 680
           T
Sbjct: 172 T 172

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 52/286 (18%), Positives = 108/286 (37%), Gaps = 23/286 (8%)

Query: 824  LWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASG---GKISLFNMMT-FKTMTT 879
            LW   +G  +   +   +          S + + ++ AS    G + L+++ T  K + T
Sbjct: 91   LWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRT 150

Query: 880  FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTL 939
                  + T LAF P    + +    D +I+++++R  +  + L GH   ++ LAFS   
Sbjct: 151  LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDG 210

Query: 940  N-VLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHET 998
              ++ S  +D  + +W     +   S      +G + S ++     F  D + L +    
Sbjct: 211  GLLIASGSSDGTIRLWDLSTGKLLRSTL----SGHSDSVVSS----FSPDGSLLASGSSD 262

Query: 999  -QIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCR 1057
              I +++      L + +    S  +    +S D + +     +G+V +    T +L   
Sbjct: 263  GTIRLWDLRSSSSLLRTLSGH-SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS 321

Query: 1058 INPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1103
            +    +     SL   P        D +    G +D G   +  L 
Sbjct: 322  LTLKGHEGPVSSLSFSP--------DGSLLVSGGSDDGTIRLWDLR 359

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query: 918 EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 955
           E+   LKGH   +T +AFS     L S   D  + +W 
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 918 EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 955
           ++   LKGH   +T +AFS   N+L S   D  + VW 
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 458 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493
            ++ H G V  +AFS     L   +  +D  ++VWD
Sbjct: 6   TLKGHTGPVTSVAFSPDGNLL--ASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.8 bits (96), Expect = 6e-05
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 458 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493
            ++ H G V  +AFS P+ +  + +  +D  IK+WD
Sbjct: 7   TLKGHTGPVTSVAFS-PDGKY-LASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif

 Score = 40.5 bits (96), Expect = 7e-05
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 4  LSRELVFLILQFLDEEKFKETVHKLEQDSGF 34
             EL  LIL++L    ++ET   L+++SG 
Sbjct: 2  SRSELNRLILEYLLRNGYEETAETLQKESGL 32

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 44.9 bits (106), Expect = 2e-04
 Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 12/84 (14%)

Query: 890 LAFHPQDNNIIAIGMEDSSIQIYNVR-----VDEVKTK---LKGHQKRITGLAFSNTLN- 940
           L F+P  + I+A G ED +I+++ +      V E+K     LKGH+K+I+ + + N +N 
Sbjct: 80  LQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDW-NPMNY 138

Query: 941 -VLVSSGADSQLCVWSTDGWEKQA 963
            ++ SSG DS + +W  +  EK+A
Sbjct: 139 YIMCSSGFDSFVNIWDIEN-EKRA 161

Length = 568

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 43.1 bits (102), Expect = 4e-04
 Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 9/94 (9%)

Query: 923  LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTR 982
            LKGH   +T +AFS    +L +   D  + VW  +  E   +                  
Sbjct: 5    LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT--------LKGHTGPVRD 56

Query: 983  VQFHLDQTHLLAVHE-TQIAIYEAPKLECLKQFV 1015
            V    D T+L +      I +++    EC++   
Sbjct: 57   VAASADGTYLASGSSDKTIRLWDLETGECVRTLT 90

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 2/40 (5%)

Query: 497 GTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
           G      +GH  PV S+      N   + S + DG ++ W
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGN--LLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 496 TGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
           +G      +GH  PV S+      + +++ S + DG IK W
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSP--DGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|220824 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain

 Score = 39.1 bits (92), Expect = 0.003
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 71  KIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLENFRDNEQL 130
            + FE+R Q+++E + +    +A+E   ++L  F  FNE   KEI +L+ L  F D    
Sbjct: 37  NLEFELRLQQFIELIREGKILEALEYARENLAPF--FNEQHLKEIQKLMGLLAFPDPTDS 94

Query: 131 SKYGDT-KSARGIMLAEL 147
           S Y      +R   LA  
Sbjct: 95  SPYKSLLSPSRWEKLANE 112

RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which is comprised of approximately 100 amino acids at the C terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined. This region contains CTLH and CRA domains annotated by SMART; however, these may be a single domain, and it is refereed to as a C-terminal to LisH motif. Length = 144

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1134
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG2048	691	consensus WD40 repeat protein [General function pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG2048	691	consensus WD40 repeat protein [General function pr	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
PTZ00421	493	coronin; Provisional	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG2096	420	consensus WD40 repeat protein [General function pr	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG1963	792	consensus WD40 repeat protein [General function pr	99.94
PTZ00420	568	coronin; Provisional	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.94
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.94
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.94
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
KOG2096	420	consensus WD40 repeat protein [General function pr	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.93
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.93
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.93
KOG1963	792	consensus WD40 repeat protein [General function pr	99.93
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.93
PTZ00420	568	coronin; Provisional	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.92
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.91
KOG0639	705	consensus Transducin-like enhancer of split protei	99.91
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
KOG0646	476	consensus WD40 repeat protein [General function pr	99.9
KOG1273	405	consensus WD40 repeat protein [General function pr	99.9
KOG2055	514	consensus WD40 repeat protein [General function pr	99.9
KOG0646	476	consensus WD40 repeat protein [General function pr	99.9
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.9
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.9
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.9
KOG4328	498	consensus WD40 protein [Function unknown]	99.89
KOG1273	405	consensus WD40 repeat protein [General function pr	99.89
KOG2055	514	consensus WD40 repeat protein [General function pr	99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.88
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.88
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.88
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.88
KOG0267	825	consensus Microtubule severing protein katanin p80	99.88
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.88
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.87
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.87
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.87
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.87
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.87
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.85
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.85
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.85
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.85
KOG0267	825	consensus Microtubule severing protein katanin p80	99.85
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.85
COG2319	466	FOG: WD40 repeat [General function prediction only	99.83
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.83
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.83
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.82
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.82
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.82
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.82
COG2319	466	FOG: WD40 repeat [General function prediction only	99.82
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.82
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.82
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.81
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.81
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.81
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.81
KOG4328	498	consensus WD40 protein [Function unknown]	99.8
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.79
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.79
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.79
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.78
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.78
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.77
KOG1310	758	consensus WD40 repeat protein [General function pr	99.76
KOG4227	609	consensus WD40 repeat protein [General function pr	99.76
KOG1334	559	consensus WD40 repeat protein [General function pr	99.76
KOG0649	325	consensus WD40 repeat protein [General function pr	99.75
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.75
KOG1188	376	consensus WD40 repeat protein [General function pr	99.75
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.74
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.74
KOG1188	376	consensus WD40 repeat protein [General function pr	99.74
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.74
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.73
PRK11028	330	6-phosphogluconolactonase; Provisional	99.73
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.73
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.73
KOG0649	325	consensus WD40 repeat protein [General function pr	99.72
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.71
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.71
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.71
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.71
KOG4227	609	consensus WD40 repeat protein [General function pr	99.7
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.7
PRK11028	330	6-phosphogluconolactonase; Provisional	99.7
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.68
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.68
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.68
PRK01742	429	tolB translocation protein TolB; Provisional	99.66
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.66
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.66
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.66
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.65
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.65
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.64
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.63
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.63
KOG1334	559	consensus WD40 repeat protein [General function pr	99.63
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.62
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.61
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.61
KOG2139	445	consensus WD40 repeat protein [General function pr	99.6
KOG2139	445	consensus WD40 repeat protein [General function pr	99.59
PRK01742	429	tolB translocation protein TolB; Provisional	99.59
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.59
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.59
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.58
KOG2321	703	consensus WD40 repeat protein [General function pr	99.58
COG4946	668	Uncharacterized protein related to the periplasmic	99.57
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.57
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.56
COG4946	668	Uncharacterized protein related to the periplasmic	99.55
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.55
PRK03629	429	tolB translocation protein TolB; Provisional	99.53
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.53
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.53
KOG1310	758	consensus WD40 repeat protein [General function pr	99.52
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.51
PRK05137	435	tolB translocation protein TolB; Provisional	99.5
KOG2321	703	consensus WD40 repeat protein [General function pr	99.5
PRK04922	433	tolB translocation protein TolB; Provisional	99.49
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.48
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.48
PRK02889	427	tolB translocation protein TolB; Provisional	99.48
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.48
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.47
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.46
PRK04922	433	tolB translocation protein TolB; Provisional	99.44
PRK03629	429	tolB translocation protein TolB; Provisional	99.44
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.44
KOG2315	566	consensus Predicted translation initiation factor	99.44
KOG2659	228	consensus LisH motif-containing protein [Cytoskele	99.43
KOG2315	566	consensus Predicted translation initiation factor	99.43
KOG2314	698	consensus Translation initiation factor 3, subunit	99.43
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.42
PRK02889	427	tolB translocation protein TolB; Provisional	99.4
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.39
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.39
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.38
PRK05137	435	tolB translocation protein TolB; Provisional	99.37
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.36
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.35
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.35
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.34
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.34
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.32
PRK04792	448	tolB translocation protein TolB; Provisional	99.31
KOG2314	698	consensus Translation initiation factor 3, subunit	99.31
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.31
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.31
PRK00178	430	tolB translocation protein TolB; Provisional	99.29
PRK01029	428	tolB translocation protein TolB; Provisional	99.29
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.28
PRK04792	448	tolB translocation protein TolB; Provisional	99.26
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.26
PRK01029	428	tolB translocation protein TolB; Provisional	99.25
KOG4547	541	consensus WD40 repeat-containing protein [General	99.24
PRK00178	430	tolB translocation protein TolB; Provisional	99.24
KOG4547	541	consensus WD40 repeat-containing protein [General	99.24
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.24
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.23
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.2
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.12
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.05
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.04
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.98
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.98
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.97
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.92
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.92
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.92
PRK04043	419	tolB translocation protein TolB; Provisional	98.89
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.89
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.85
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.83
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.79
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.78
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.77
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.74
PRK04043	419	tolB translocation protein TolB; Provisional	98.74
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.74
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.73
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.72
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.72
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.7
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.7
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.7
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.69
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.69
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.69
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.69
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.66
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.64
KOG2695	425	consensus WD40 repeat protein [General function pr	98.57
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.56
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.55
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.54
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.54
KOG0396	389	consensus Uncharacterized conserved protein [Funct	98.51
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.5
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.5
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.49
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.47
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.47
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.46
PRK02888	635	nitrous-oxide reductase; Validated	98.45
PF10607	145	CLTH: CTLH/CRA C-terminal to LisH motif domain; In	98.41
PRK02888	635	nitrous-oxide reductase; Validated	98.4
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.38
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.38
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.33
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.31
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.3
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.29
KOG2695	425	consensus WD40 repeat protein [General function pr	98.25
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.22
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.21
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.21
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.16
KOG3621	726	consensus WD40 repeat-containing protein [General	98.16
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.16
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.15
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.15
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.13
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.13
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.12
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.04
smart00668	58	CTLH C-terminal to LisH motif. Alpha-helical motif	98.02
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.96
KOG3621	726	consensus WD40 repeat-containing protein [General	97.94
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.93
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.92
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	97.92
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.92
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.9
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.9
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.87
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	97.78
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.77
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.76
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.76
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.75
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.68
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.67
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.64
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.63
COG3391	381	Uncharacterized conserved protein [Function unknow	97.62
PRK13616	591	lipoprotein LpqB; Provisional	97.52
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.51
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.49
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	97.46
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.46
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.44
COG3391	381	Uncharacterized conserved protein [Function unknow	97.42
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.42
PRK13616	591	lipoprotein LpqB; Provisional	97.38
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.3
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.29
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.28
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.22
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.07
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.01
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.99
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.94
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.94
PRK10115	686	protease 2; Provisional	96.88
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.83
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.81
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.81
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.78
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.76
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.75
PHA02713	557	hypothetical protein; Provisional	96.71
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.71
KOG2395	644	consensus Protein involved in vacuole import and d	96.7
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.64
PRK10115	686	protease 2; Provisional	96.63
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.56
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.53
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.52
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.48
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.47
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.46
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.45
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.3
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.2
KOG2395	644	consensus Protein involved in vacuole import and d	96.1
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	96.03
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.02
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.02
PHA02713	557	hypothetical protein; Provisional	96.0
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.99
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.94
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.92
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.82
PF14727	418	PHTB1_N: PTHB1 N-terminus	95.71
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.66
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.61
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.58
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.55
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.53
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.52
PRK13684	334	Ycf48-like protein; Provisional	95.47
PRK13684	334	Ycf48-like protein; Provisional	95.42
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.38
KOG2444	238	consensus WD40 repeat protein [General function pr	95.32
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.26
KOG2444	238	consensus WD40 repeat protein [General function pr	95.25
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.18
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.78
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	94.64
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.59
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	94.46
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	94.08
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.02
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	93.95
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.92
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.9
PHA03098	534	kelch-like protein; Provisional	93.87
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.68
PHA03098	534	kelch-like protein; Provisional	93.61
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.56
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	93.44
COG4590	733	ABC-type uncharacterized transport system, permeas	93.04
KOG2247	615	consensus WD40 repeat-containing protein [General	92.85
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	92.71
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	92.53
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	92.44
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.41
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	92.39
PLN00033	398	photosystem II stability/assembly factor; Provisio	92.21
PHA02790	480	Kelch-like protein; Provisional	92.12
PLN00033	398	photosystem II stability/assembly factor; Provisio	92.06
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	91.81
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	91.51
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	91.33
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	91.28
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	91.23
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	91.21
PHA02790	480	Kelch-like protein; Provisional	91.19
COG3292	671	Predicted periplasmic ligand-binding sensor domain	91.17
KOG2377	657	consensus Uncharacterized conserved protein [Funct	91.01
PF11725	1774	AvrE: Pathogenicity factor; InterPro: IPR021085 Th	90.98
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	90.75
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	90.74
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	90.47
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	90.3
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	90.22
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	90.11
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	90.01
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	89.93
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	89.61
PF13449	326	Phytase-like: Esterase-like activity of phytase	89.55
COG1520	370	FOG: WD40-like repeat [Function unknown]	89.38
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	89.27
COG1520	370	FOG: WD40-like repeat [Function unknown]	88.76
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	88.75
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	88.16
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	88.15
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	88.11
COG5167	776	VID27 Protein involved in vacuole import and degra	87.66
PF13449	326	Phytase-like: Esterase-like activity of phytase	87.33
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	87.09
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	86.55
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	85.94
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	85.49
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	85.15
COG3292	671	Predicted periplasmic ligand-binding sensor domain	84.97
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	84.88
PRK13613	599	lipoprotein LpqB; Provisional	84.53
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	83.59
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	83.23
PF11725	1774	AvrE: Pathogenicity factor; InterPro: IPR021085 Th	82.87
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	82.45
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	81.8
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	81.77
PF09862	113	DUF2089: Protein of unknown function (DUF2089); In	81.76
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	81.71
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	81.71
PRK13615	557	lipoprotein LpqB; Provisional	81.49
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	81.4
COG5276	370	Uncharacterized conserved protein [Function unknow	81.3
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	81.04
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	81.01

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.6e-69  Score=540.89  Aligned_cols=491  Identities=22%  Similarity=0.327  Sum_probs=407.8

Q ss_pred             hHHHHHHHHHHhhhcCHHHHHHHHHHhcCCCcc---HHHHHHHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHHH
Q 001163            5 SRELVFLILQFLDEEKFKETVHKLEQDSGFFFN---MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKY   81 (1134)
Q Consensus         5 ~~e~~~li~q~L~~~g~~~s~~~l~~Esg~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~   81 (1134)
                      +.|++||++|+|+.+||.+|+.+||.|+|+.+.   .+.|.++++.|+|++++..+..+. .++......+.|++.||+|
T Consensus        17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~-~~de~~~~ea~fLv~kQ~f   95 (519)
T KOG0293|consen   17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRIS-FEDERNRKEAMFLVNKQIF   95 (519)
T ss_pred             cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhcc-CcchhhhHHHHHHHHHHHH
Confidence            458999999999999999999999999999885   899999999999999999998873 3334445559999999999


Q ss_pred             HHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccccccccCCCChhHHHHHHHHHHhhcccCcCccccc
Q 001163           82 LEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKL  161 (1134)
Q Consensus        82 lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~i~~~~~~~~~~  161 (1134)
                      ||++..|....|+.+||+++.++. ++.++|++|..-|..++.....+...-......|.+|+++|+++|||+++     
T Consensus        96 LEf~k~~~is~al~~l~~~~~~lr-~~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~il-----  169 (519)
T KOG0293|consen   96 LEFLKTGSISHALPVLRNPVLYLR-KNKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPNIL-----  169 (519)
T ss_pred             HHHHhhccHhhhhHhhhcchhhhh-hhHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHhhc-----
Confidence            999999999999999999998886 58999999988777655443332222122456899999999999999999     


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHhcCCCCCCCCCcccceeccccCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCC
Q 001163          162 QFPSLKNSRLRTLINQSLNWQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQP  241 (1134)
Q Consensus       162 ~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  241 (1134)
                          +|++||++||+||++||+++|.|||+ .+..|||.||.|++               .++|             ++.
T Consensus       170 ----lP~rRLehLl~qAv~~Q~d~cvyhns-ldsvsll~Dh~c~~---------------~qip-------------~qt  216 (519)
T KOG0293|consen  170 ----LPKRRLEHLLEQAVKYQRDSCVYHNS-LDSVSLLSDHFCGR---------------LQIP-------------SQT  216 (519)
T ss_pred             ----CChHHHHHHHHHHHHHHHhHhHHhcc-cchhhhhhhcccCc---------------ccCC-------------chh
Confidence                99999999999999999999999995 55589999999998               2233             110


Q ss_pred             CCCCCcccccccccCCCCCCCCCCCCCCccccCCCchhhhhcCCCCCCCCCCcccccccChHhHhhcCCCCCCCcccccc
Q 001163          242 TPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQTADSEHVLKRSRPFGISDEVNNL  321 (1134)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~vw~~  321 (1134)
                                                           .++|.                             .|+||||  
T Consensus       217 -------------------------------------~qil~-----------------------------~htdEVW--  228 (519)
T KOG0293|consen  217 -------------------------------------WQILQ-----------------------------DHTDEVW--  228 (519)
T ss_pred             -------------------------------------hhhHh-----------------------------hCCCcEE--
Confidence                                                 13444                             9999999  


Q ss_pred             ccceeeeEeCCCCCCcccccCCCCCceeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeee
Q 001163          322 SVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWE  401 (1134)
Q Consensus       322 ~~~i~~~~~s~~~~~l~~~~~d~~~~~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~  401 (1134)
                                                             -+.||++|+| ||+++.|.+..||++.....+.     +. 
T Consensus       229 ---------------------------------------fl~FS~nGky-LAsaSkD~Taiiw~v~~d~~~k-----l~-  262 (519)
T KOG0293|consen  229 ---------------------------------------FLQFSHNGKY-LASASKDSTAIIWIVVYDVHFK-----LK-  262 (519)
T ss_pred             ---------------------------------------EEEEcCCCee-EeeccCCceEEEEEEecCccee-----ee-
Confidence                                                   5789999996 5999999999999987654421     11 


Q ss_pred             ccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEE
Q 001163          402 LGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVV  481 (1134)
Q Consensus       402 ~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~  481 (1134)
                                ..+.+|..+|..+.||||.+||++|+.|..+.+||+.+|......  -.+|...+.+++|.|||.  .++
T Consensus       263 ----------~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y--~~~~~~S~~sc~W~pDg~--~~V  328 (519)
T KOG0293|consen  263 ----------KTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLY--PSGLGFSVSSCAWCPDGF--RFV  328 (519)
T ss_pred             ----------eeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhc--ccCcCCCcceeEEccCCc--eeE
Confidence                      137899999999999999999999999999999999999876532  234678999999999999  799


Q ss_pred             EEeCCCeEEEEECCCCceeEEecCCC-cCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEEC
Q 001163          482 TCGEDRVIKVWDAVTGTKQYIFEGHE-SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYS  560 (1134)
Q Consensus       482 s~s~d~~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s  560 (1134)
                      +|+.|+++..||+ .|+.+..+++-. ..|.++++.  .||.++++.+.|..|++++.++...+. +.....+|++++.|
T Consensus       329 ~Gs~dr~i~~wdl-Dgn~~~~W~gvr~~~v~dlait--~Dgk~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS  404 (519)
T KOG0293|consen  329 TGSPDRTIIMWDL-DGNILGNWEGVRDPKVHDLAIT--YDGKYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSIS  404 (519)
T ss_pred             ecCCCCcEEEecC-CcchhhcccccccceeEEEEEc--CCCcEEEEEecccceeeechhhhhhhc-cccccCceeEEEEc
Confidence            9999999999995 566666666543 558888874  566899999999999999987655443 33345689999999


Q ss_pred             cCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCc-eEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeEEEec
Q 001163          561 ADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS-VGVVQFDT-TKNRFLAAGDEFMIKFWDMDNVNLLASIDA  638 (1134)
Q Consensus       561 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~-v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  638 (1134)
                      .|++++++.-.+    ..+++||++..+.++.+.||..+. +..-||.. +..++++|++|+.|+||+..+|+++..+.+
T Consensus       405 ~d~k~~LvnL~~----qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG  480 (519)
T KOG0293|consen  405 KDGKLALVNLQD----QEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG  480 (519)
T ss_pred             CCCcEEEEEccc----CeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC
Confidence            999999887653    359999999999999999997643 33345654 448999999999999999999999999996


Q ss_pred             CCCCCCcceEEEcC-CCcEEEEEECCCcEEEEEccC
Q 001163          639 DGGLQASPCIRFNK-EGILLAVSTNDNGIKILANAD  673 (1134)
Q Consensus       639 ~~~~~~v~~v~~sp-~~~~l~~~~~dg~i~iw~~~~  673 (1134)
                      |  ...|+||+|+| +..++|++++||+||||....
T Consensus       481 H--s~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  481 H--SKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             C--cceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            6  67999999999 568999999999999998754

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=5.7e-63  Score=477.87  Aligned_cols=486  Identities=21%  Similarity=0.320  Sum_probs=397.4

Q ss_pred             hHHHHHHHHHHhhhcCHHHHHHHHHHhcCCCcc----HHHHHHHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHH
Q 001163            5 SRELVFLILQFLDEEKFKETVHKLEQDSGFFFN----MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQK   80 (1134)
Q Consensus         5 ~~e~~~li~q~L~~~g~~~s~~~l~~Esg~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~   80 (1134)
                      ..||||||+|||+|+.+++++++||+|+++++|    ++.|.+.|.+|+||.+++.+.+| .+|+.     -+..+|+|.
T Consensus         7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL-KLP~k-----kL~dLYEqi   80 (508)
T KOG0275|consen    7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL-KLPDK-----KLIDLYEQI   80 (508)
T ss_pred             cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc-cCchh-----HHHHHHHHH
Confidence            569999999999999999999999999999998    89999999999999999999999 55554     678899999


Q ss_pred             HHHHHhcCCHHHHHHHHHhh--cccccccCHHHHHHHHHHhcccccccccccccCCC-ChhHH-HHHHHHHHhhcccCcC
Q 001163           81 YLEALDKRDRAKAVEILVKD--LKVFSAFNEDLFKEITQLLTLENFRDNEQLSKYGD-TKSAR-GIMLAELKKLIEANPL  156 (1134)
Q Consensus        81 ~lEll~~~~~~~a~~~l~~~--l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~-~~~~R-~~l~~~l~~~i~~~~~  156 (1134)
                      .|||+|.+|...|..+||+.  +.-|+..+++||.+|+.||..+.+++.+.   |++ +++.| ..+...|...+.    
T Consensus        81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~Ea---Y~dssKEkrRa~IAQ~ls~EV~----  153 (508)
T KOG0275|consen   81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREA---YGDSSKEKRRAVIAQALSGEVH----  153 (508)
T ss_pred             HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhh---cCcchHHHHHHHHHHHhcCceE----
Confidence            99999999999999999974  55566778999999999999999998887   444 45544 555555544333    


Q ss_pred             ccccccCCCCchHHHHHHHHHHHHHHHhcCCCCCCCCCcccceeccccCCCCCCCCCCCCCCCccccCCCCCCCCCCCCC
Q 001163          157 FRDKLQFPSLKNSRLRTLINQSLNWQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAH  236 (1134)
Q Consensus       157 ~~~~~~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (1134)
                              .+||+||+.||+|||+||+.++++|.   +                                 ..|+     
T Consensus       154 --------VVppSRLlaLlGQaLKWQqHQGLLPP---G---------------------------------t~iD-----  184 (508)
T KOG0275|consen  154 --------VVPPSRLLALLGQALKWQQHQGLLPP---G---------------------------------TTID-----  184 (508)
T ss_pred             --------EcChHHHHHHHHHHhhhHhhcCCCCC---C---------------------------------ceee-----
Confidence                    29999999999999999999997762   1                                 1122     


Q ss_pred             CCCCCCCCCCcccccccccCCCCCCCCCCCCCCccccCCCchhhhhcCCCCCCCCCCcccccccChHhHhhcCCCCCCCc
Q 001163          237 GPFQPTPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQTADSEHVLKRSRPFGISD  316 (1134)
Q Consensus       237 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  316 (1134)
                       .|++..+         +...+-+.+|.+-...|+                                             
T Consensus       185 -LFRGkAA---------~K~~~Ee~~Pt~l~r~IK---------------------------------------------  209 (508)
T KOG0275|consen  185 -LFRGKAA---------MKDQEEERYPTQLARSIK---------------------------------------------  209 (508)
T ss_pred             -eccchhh---------hhhhHhhhchHHhhhhee---------------------------------------------
Confidence             5555432         111111222222222222                                             


Q ss_pred             cccccccceeeeEeCCCCCCcccccCCCCCceeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeec
Q 001163          317 EVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKS  396 (1134)
Q Consensus       317 ~vw~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~  396 (1134)
                                                          |+..+.+.|..|||||+| +++|+.||.|.+||..+|+.....+
T Consensus       210 ------------------------------------Fg~KSh~EcA~FSPDgqy-LvsgSvDGFiEVWny~~GKlrKDLk  252 (508)
T KOG0275|consen  210 ------------------------------------FGQKSHVECARFSPDGQY-LVSGSVDGFIEVWNYTTGKLRKDLK  252 (508)
T ss_pred             ------------------------------------cccccchhheeeCCCCce-Eeeccccceeeeehhccchhhhhhh
Confidence                                                334455679999999996 5899999999999999998654322


Q ss_pred             eeeeeccccCccccc-cccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeee-cCCCCEEEEEEecC
Q 001163          397 FKVWELGACSMPLQA-SLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIE-AHVGSVNDLAFSYP  474 (1134)
Q Consensus       397 ~~~~~~~~~~~~~~~-~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~~  474 (1134)
                                  +++ ..+.-+..+|.|+.||.|...||+|+.||.|+||.+.+|.+++.   +. .|+..|+|+.|+.|
T Consensus       253 ------------YQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRr---FdrAHtkGvt~l~FSrD  317 (508)
T KOG0275|consen  253 ------------YQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRR---FDRAHTKGVTCLSFSRD  317 (508)
T ss_pred             ------------hhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHH---hhhhhccCeeEEEEccC
Confidence                        222 23566889999999999999999999999999999999999884   44 89999999999999


Q ss_pred             CCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCC--C
Q 001163          475 NKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG--H  552 (1134)
Q Consensus       475 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--~  552 (1134)
                      +.  .+++++.|.++++.-+.+|++++.|+||.+.|+...|  .++|..+++++.||+|++|+..+.++...+...+  .
T Consensus       318 ~S--qiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~f--t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~  393 (508)
T KOG0275|consen  318 NS--QILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATF--TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDY  393 (508)
T ss_pred             cc--hhhcccccceEEEeccccchhHHHhcCccccccceEE--cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcc
Confidence            99  5899999999999999999999999999999999988  4566999999999999999999998888776544  3


Q ss_pred             CeeEEEECcCC-CEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCC--CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 001163          553 SSTMMAYSADG-ARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG--KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN  629 (1134)
Q Consensus       553 ~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  629 (1134)
                      +|.++-.-|.+ ..+++|..    ..++++.++. |+.++.|....  ++...+.+.+|.|.++++.++|+.++.+...+
T Consensus       394 ~vnsv~~~PKnpeh~iVCNr----sntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~s  468 (508)
T KOG0275|consen  394 PVNSVILLPKNPEHFIVCNR----SNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLS  468 (508)
T ss_pred             cceeEEEcCCCCceEEEEcC----CCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeec
Confidence            77787777754 56666643    4468888875 77888776532  23566778999999999999999999999999


Q ss_pred             CceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEE
Q 001163          630 VNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILA  670 (1134)
Q Consensus       630 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~  670 (1134)
                      |++..++..|  ...+..++-+|..+.+|+-+.||.+++|.
T Consensus       469 G~LE~tl~Vh--EkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  469 GKLERTLPVH--EKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             Cceeeeeecc--cccccccccCcccchhhhhcccchhhhcC
Confidence            9999999876  55788999999999999999999999994

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.2e-57  Score=487.64  Aligned_cols=577  Identities=18%  Similarity=0.237  Sum_probs=482.6

Q ss_pred             EEEcCCCCeEEEEEeCCCcEEEEecCCccce-eeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCC
Q 001163          362 MDFHPVQQILLVVGTNMGDVMLWEVGSRERI-AVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKH  440 (1134)
Q Consensus       362 v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg  440 (1134)
                      ++||++|+. |++...| .|.+-|+.++... ..                  .-......+++++.+||+++|++++..+
T Consensus        25 ~~~s~nG~~-L~t~~~d-~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~   84 (775)
T KOG0319|consen   25 VAWSSNGQH-LYTACGD-RVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ   84 (775)
T ss_pred             eeECCCCCE-EEEecCc-eEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence            899999995 4665443 4888899988762 21                  1245678999999999999999999999


Q ss_pred             EEEEEEccCCceeeeeeeeec-CCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccC
Q 001163          441 IVHLYTYHGGDELRNHLEIEA-HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKE  519 (1134)
Q Consensus       441 ~v~iwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~  519 (1134)
                      .+++|++.+++.++   .+.. |++||.-++|+|.+.  ++++|+.|+.++|||+..+.+.+.|+||.+.|.++.|++..
T Consensus        85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~  159 (775)
T KOG0319|consen   85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW  159 (775)
T ss_pred             eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence            99999999998776   5666 999999999999997  89999999999999999999999999999999999999998


Q ss_pred             CccEEEEecCCCcEEEEecCCCCc-eeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCC
Q 001163          520 NIQFIFSTATDGKIKAWLYDNLGS-RVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK  598 (1134)
Q Consensus       520 ~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~  598 (1134)
                      +...|++|..|+++++||+..... ...+..|.+.|++++|++|+..+++++.|+    .+.+||+.+.+..++++..+ 
T Consensus       160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDk----vi~vwd~~~~~~l~~lp~ye-  234 (775)
T KOG0319|consen  160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDK----VIIVWDLVQYKKLKTLPLYE-  234 (775)
T ss_pred             chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCc----EEEEeehhhhhhhheechhh-
Confidence            888899999999999999985544 667788899999999999999999998754    69999998877777776654 


Q ss_pred             CceEEEEEcCC-----CCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccC
Q 001163          599 RSVGVVQFDTT-----KNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD  673 (1134)
Q Consensus       599 ~~v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~  673 (1134)
                       .+.++.+.++     +.+++++|.+|.+++||.++++.+........ ..+..+...+....++..+.|..+.++|..+
T Consensus       235 -~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~-~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~  312 (775)
T KOG0319|consen  235 -SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDS-EEIDHLLAIESMSQLLLVTAEQNLFLYDEDE  312 (775)
T ss_pred             -heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCc-hhhhcceeccccCceEEEEccceEEEEEccc
Confidence             5677777776     67999999999999999999988876654322 2356666666566677778899999999888


Q ss_pred             CceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccce
Q 001163          674 GIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRI  753 (1134)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i  753 (1134)
                      . ...+.+-|...++....                                   .+      -++...++.+...+.+++
T Consensus       313 l-~i~k~ivG~ndEI~Dm~-----------------------------------~l------G~e~~~laVATNs~~lr~  350 (775)
T KOG0319|consen  313 L-TIVKQIVGYNDEILDMK-----------------------------------FL------GPEESHLAVATNSPELRL  350 (775)
T ss_pred             c-EEehhhcCCchhheeee-----------------------------------ec------CCccceEEEEeCCCceEE
Confidence            7 77888878777655321                                   11      123456777788889999


Q ss_pred             eeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCccc
Q 001163          754 WKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILM  833 (1134)
Q Consensus       754 w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  833 (1134)
                      ++..+..    +..+    .+|...|.++....+|.+|++++.|.++++|.++..                   .+....
T Consensus       351 y~~~~~~----c~ii----~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~-------------------~~~~~~  403 (775)
T KOG0319|consen  351 YTLPTSY----CQII----PGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNN-------------------CSKSLC  403 (775)
T ss_pred             EecCCCc----eEEE----eCchhheeeeeecccCcEEEEecCCceEEEEEecCC-------------------cchhhh
Confidence            9776533    2221    469999999998888899999999999999988432                   111111


Q ss_pred             ccCCCCCCCCCCeeEEEEcCCC-CeEEEee-CCeEEEEEccCCe-----EE----EEecCCCCCeEEEEEcCCCCcEEEE
Q 001163          834 TNDISDTNPEDAVPCFALSKND-SYVMSAS-GGKISLFNMMTFK-----TM----TTFMPPPPAATFLAFHPQDNNIIAI  902 (1134)
Q Consensus       834 ~~~~~~~~h~~~v~~v~~s~dg-~~la~~s-dg~i~lwd~~~~~-----~~----~~~~~~~~~v~~l~~sp~~~~~la~  902 (1134)
                      .....  +|...|.+++++..+ .++++++ |.++++|++..-+     ..    .+...|...|+|++++| +++++|+
T Consensus       404 ~a~~~--gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT  480 (775)
T KOG0319|consen  404 VAQAN--GHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIAT  480 (775)
T ss_pred             hhhhc--ccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEe
Confidence            11223  499999999998766 5788888 9999999996511     11    12346899999999999 8999999


Q ss_pred             EeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceE
Q 001163          903 GMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTR  982 (1134)
Q Consensus       903 g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  982 (1134)
                      |+.|++.+||++..++...++.||...|+++.|++..+.|+|+|.|++|+||.+++.     .+++.++||.   ..|..
T Consensus       481 ~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f-----SClkT~eGH~---~aVlr  552 (775)
T KOG0319|consen  481 GSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF-----SCLKTFEGHT---SAVLR  552 (775)
T ss_pred             cccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc-----eeeeeecCcc---ceeEe
Confidence            999999999999999999999999999999999999999999999999999999994     4899999998   48999


Q ss_pred             EEEcCCCCEEEE-EeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCC
Q 001163          983 VQFHLDQTHLLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTL 1052 (1134)
Q Consensus       983 l~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~ 1052 (1134)
                      +.|-.+|+.|++ +.||-+++|++++++|+..+.  .|.+.|++++-++++.+++||+.||.|.+|.=.|.
T Consensus       553 a~F~~~~~qliS~~adGliKlWnikt~eC~~tlD--~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te  621 (775)
T KOG0319|consen  553 ASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD--AHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE  621 (775)
T ss_pred             eeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh--hccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence            999999999999 699999999999999999987  89999999999999999999999999999986664

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.1e-54  Score=462.49  Aligned_cols=578  Identities=14%  Similarity=0.232  Sum_probs=467.0

Q ss_pred             eEeCCCCCCcccccCCCC------Ccee-EEEee--cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeecee
Q 001163          328 VAYTPQSLGQSSYSTDDL------PKTV-VMTLN--QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFK  398 (1134)
Q Consensus       328 ~~~s~~~~~l~~~~~d~~------~~~~-~~~~~--h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~  398 (1134)
                      ++||++|+.|++...+..      +... +....  ....|++++.+||+.+ |++++..+.+++|++.+++.++.    
T Consensus        25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~-L~~a~rs~llrv~~L~tgk~irs----   99 (775)
T KOG0319|consen   25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEV-LVTASRSQLLRVWSLPTGKLIRS----   99 (775)
T ss_pred             eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCccE-EEEeeccceEEEEEcccchHhHh----
Confidence            569999999887766532      2222 22222  5679999999999985 57889999999999999977653    


Q ss_pred             eeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCce
Q 001163          399 VWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQL  478 (1134)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~  478 (1134)
                       |+             .-|++||.-++|+|.|.+||+|+.|+.|+|||+..+.+..   .|.||.+.|.++.|.|+-...
T Consensus       100 -wK-------------a~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~~  162 (775)
T KOG0319|consen  100 -WK-------------AIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNRW  162 (775)
T ss_pred             -Hh-------------hccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccchh
Confidence             21             2399999999999999999999999999999999988666   799999999999999998876


Q ss_pred             EEEEEeCCCeEEEEECCCCce-eEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEE
Q 001163          479 SVVTCGEDRVIKVWDAVTGTK-QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMM  557 (1134)
Q Consensus       479 ~l~s~s~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~  557 (1134)
                      +|++|..|+++++||+.+.+. +..+..|.+.|+++++.++  +..+++++.|..+.+||+...+....+.. ...+.++
T Consensus       163 lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d--~~~~ls~~RDkvi~vwd~~~~~~l~~lp~-ye~~E~v  239 (775)
T KOG0319|consen  163 LLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSED--SLELLSVGRDKVIIVWDLVQYKKLKTLPL-YESLESV  239 (775)
T ss_pred             heeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccC--CceEEEeccCcEEEEeehhhhhhhheech-hhheeeE
Confidence            899999999999999996654 8889999999999998655  57899999999999999965444443332 2355666


Q ss_pred             EECcC-----CCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce
Q 001163          558 AYSAD-----GARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL  632 (1134)
Q Consensus       558 ~~s~~-----~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  632 (1134)
                      .+-++     +.++++.|.    ++.+++||.+++++..+........+..+...+..+.+++...|..+.++|.++.+.
T Consensus       240 v~l~~~~~~~~~~~~TaG~----~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i  315 (775)
T KOG0319|consen  240 VRLREELGGKGEYIITAGG----SGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTI  315 (775)
T ss_pred             EEechhcCCcceEEEEecC----CceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEE
Confidence            66665     668888875    446999999999887765544333466666667777888888899999999999998


Q ss_pred             eEEEecCCCCCCcceEEE-cCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccc
Q 001163          633 LASIDADGGLQASPCIRF-NKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANAN  711 (1134)
Q Consensus       633 ~~~~~~~~~~~~v~~v~~-sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  711 (1134)
                      ...+-+.  .+.|..+.| .|+.++|+++++.+.+|+|+..+.  ....+.+|...+....                   
T Consensus       316 ~k~ivG~--ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~--~c~ii~GH~e~vlSL~-------------------  372 (775)
T KOG0319|consen  316 VKQIVGY--NDEILDMKFLGPEESHLAVATNSPELRLYTLPTS--YCQIIPGHTEAVLSLD-------------------  372 (775)
T ss_pred             ehhhcCC--chhheeeeecCCccceEEEEeCCCceEEEecCCC--ceEEEeCchhheeeee-------------------
Confidence            8888754  667888876 467799999999999999988776  3337888877665431                   


Q ss_pred             cccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCC-ce
Q 001163          712 VGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSG-LA  790 (1134)
Q Consensus       712 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg-~~  790 (1134)
                                             ....+..+++++.|+++++|.+++......   ......+|.+.|.+++++..+ ..
T Consensus       373 -----------------------~~~~g~llat~sKD~svilWr~~~~~~~~~---~~a~~~gH~~svgava~~~~~asf  426 (775)
T KOG0319|consen  373 -----------------------VWSSGDLLATGSKDKSVILWRLNNNCSKSL---CVAQANGHTNSVGAVAGSKLGASF  426 (775)
T ss_pred             -----------------------ecccCcEEEEecCCceEEEEEecCCcchhh---hhhhhcccccccceeeecccCccE
Confidence                                   112356789999999999999954322221   122236799999999998765 57


Q ss_pred             eeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEE
Q 001163          791 ILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLF  869 (1134)
Q Consensus       791 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lw  869 (1134)
                      +++++.|.++++|++...+....                ...+........|...|.+++++|+.+++|+|+ |.+.+||
T Consensus       427 fvsvS~D~tlK~W~l~~s~~~~~----------------~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW  490 (775)
T KOG0319|consen  427 FVSVSQDCTLKLWDLPKSKETAF----------------PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIW  490 (775)
T ss_pred             EEEecCCceEEEecCCCcccccc----------------cceehhhHHHHhhcccccceEecCCCceEEecccccceeee
Confidence            88999999999999885211000                000000011124999999999999999999999 9999999


Q ss_pred             EccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCC
Q 001163          870 NMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADS  949 (1134)
Q Consensus       870 d~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg  949 (1134)
                      +++.++...++.+|...|.|+.|+| ..+.+|+++.|++|+||.+.+..++++|.||...|..+.|-.+|+.|+|++.||
T Consensus       491 ~le~~~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adG  569 (775)
T KOG0319|consen  491 DLEQLRLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADG  569 (775)
T ss_pred             cccCceEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCC
Confidence            9999999999999999999999999 899999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCc
Q 001163          950 QLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKL 1008 (1134)
Q Consensus       950 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~ 1008 (1134)
                      -|++|++++++     +......|.   +.|-+++.++.+.++++ +.||.|.+|.-.+.
T Consensus       570 liKlWnikt~e-----C~~tlD~H~---DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te  621 (775)
T KOG0319|consen  570 LIKLWNIKTNE-----CEMTLDAHN---DRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE  621 (775)
T ss_pred             cEEEEeccchh-----hhhhhhhcc---ceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence            99999999976     666677776   57999999999999998 59999999965433

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.7e-51  Score=438.58  Aligned_cols=607  Identities=18%  Similarity=0.281  Sum_probs=457.2

Q ss_pred             eEeCCCCCCcccccCCC-----CCceeEEE--eecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeee
Q 001163          328 VAYTPQSLGQSSYSTDD-----LPKTVVMT--LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVW  400 (1134)
Q Consensus       328 ~~~s~~~~~l~~~~~d~-----~~~~~~~~--~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~  400 (1134)
                      +.|+++|..+.+-..+.     +.++...+  +.+...|++++.||+|.. +.+....|...+-++.....++..++   
T Consensus        20 l~ft~dG~sviSPvGNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~l-llavdE~g~~~lvs~~~r~Vlh~f~f---   95 (893)
T KOG0291|consen   20 LVFTKDGNSVISPVGNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTL-LLAVDERGRALLVSLLSRSVLHRFNF---   95 (893)
T ss_pred             EEECCCCCEEEeccCCEEEEEEccCCcceeEEeecCCceEEEEeCCCceE-EEEEcCCCcEEEEecccceeeEEEee---
Confidence            56777777666554332     23333344  458999999999999984 45668889999999888877765433   


Q ss_pred             eccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCce-----eeeeeeeecCCCCEEEEEEecCC
Q 001163          401 ELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDE-----LRNHLEIEAHVGSVNDLAFSYPN  475 (1134)
Q Consensus       401 ~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~-----~~~~~~l~~h~~~V~~v~~s~~~  475 (1134)
                                       ..+|.|+.|||||+++|+|..+ .+.||.......     .....+..+|-..|.++.|+.|.
T Consensus        96 -----------------k~~v~~i~fSPng~~fav~~gn-~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DS  157 (893)
T KOG0291|consen   96 -----------------KRGVGAIKFSPNGKFFAVGCGN-LLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDS  157 (893)
T ss_pred             -----------------cCccceEEECCCCcEEEEEecc-eeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCC
Confidence                             4689999999999999998654 599998754322     22334577899999999999999


Q ss_pred             CceEEEEEeCCCeEEEEECCCCce--eEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCC
Q 001163          476 KQLSVVTCGEDRVIKVWDAVTGTK--QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHS  553 (1134)
Q Consensus       476 ~~~~l~s~s~d~~i~iwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  553 (1134)
                      +  +|++||.|.++++|+++..+.  .+.+.+|...|.++-|..  +...+++.+.||.+.+|..+.......-....  
T Consensus       158 r--~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~--~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd--  231 (893)
T KOG0291|consen  158 R--LLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGA--NSLDLYTVSKDGALFVWTCDLRPPELDKAEKD--  231 (893)
T ss_pred             c--eEEeccccceEEEEEeccccccceEeccCCCcceEEEEecc--CcceEEEEecCceEEEEEecCCCccccccccc--
Confidence            9  899999999999999987766  567889999998877744  44779999999999999876431111100000  


Q ss_pred             eeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcee
Q 001163          554 STMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL  633 (1134)
Q Consensus       554 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  633 (1134)
                             .+|.--.-.-.+++....-..|-    +..+.+-......+++.+|++..+.|+++-..|...+|.+..-.++
T Consensus       232 -------~eg~~d~~~~~~~Eek~~~~~~~----k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~li  300 (893)
T KOG0291|consen  232 -------EEGSDDEEMDEDGEEKTHKIFWY----KTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLI  300 (893)
T ss_pred             -------ccccccccccccchhhhcceEEE----EEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEE
Confidence                   01100000000001000111221    1111222222247899999999999999999999999999999999


Q ss_pred             EEEecCCCCCCcceEEEcCCCcEEEEEECC-CcEEEEEccCCceeEEEeccCcccccccchhhhhccccccccccccccc
Q 001163          634 ASIDADGGLQASPCIRFNKEGILLAVSTND-NGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANV  712 (1134)
Q Consensus       634 ~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  712 (1134)
                      +.+...  ...|..++|+..|.+||.|+.. |.+.+|+..+..                                     
T Consensus       301 h~LSis--~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs-------------------------------------  341 (893)
T KOG0291|consen  301 HSLSIS--DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES-------------------------------------  341 (893)
T ss_pred             EEeecc--cceeeEEEecccCCEEEEcCCccceEEEEEeeccc-------------------------------------
Confidence            999865  4589999999999999998765 788899876541                                     


Q ss_pred             ccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceee
Q 001163          713 GTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAIL  792 (1134)
Q Consensus       713 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~  792 (1134)
                                                                             +.+..++|...+++++++|||++++
T Consensus       342 -------------------------------------------------------YVlKQQgH~~~i~~l~YSpDgq~ia  366 (893)
T KOG0291|consen  342 -------------------------------------------------------YVLKQQGHSDRITSLAYSPDGQLIA  366 (893)
T ss_pred             -------------------------------------------------------eeeeccccccceeeEEECCCCcEEE
Confidence                                                                   1222345889999999999999999


Q ss_pred             eeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEc
Q 001163          793 ALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNM  871 (1134)
Q Consensus       793 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~  871 (1134)
                      +|+.||.|+|||..                      +|.+... +..  |+..|+.+.|+.+|+.+++.+ ||+|+.||+
T Consensus       367 TG~eDgKVKvWn~~----------------------SgfC~vT-Fte--Hts~Vt~v~f~~~g~~llssSLDGtVRAwDl  421 (893)
T KOG0291|consen  367 TGAEDGKVKVWNTQ----------------------SGFCFVT-FTE--HTSGVTAVQFTARGNVLLSSSLDGTVRAWDL  421 (893)
T ss_pred             eccCCCcEEEEecc----------------------CceEEEE-ecc--CCCceEEEEEEecCCEEEEeecCCeEEeeee
Confidence            99999999999644                      4444432 444  999999999999999999999 999999999


Q ss_pred             cCCeEEEEecCCC-CCeEEEEEcCCCCcEEEEEeCCC-cEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCC
Q 001163          872 MTFKTMTTFMPPP-PAATFLAFHPQDNNIIAIGMEDS-SIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADS  949 (1134)
Q Consensus       872 ~~~~~~~~~~~~~-~~v~~l~~sp~~~~~la~g~~dg-~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg  949 (1134)
                      ..++..+++..+. -...|++..| .|.++..|+.|. .|+||++.+|+.+..+.||.++|.+++|+|++..|+|+|.|.
T Consensus       422 kRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDk  500 (893)
T KOG0291|consen  422 KRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDK  500 (893)
T ss_pred             cccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccc
Confidence            9999999998654 3478899998 788998888886 899999999999999999999999999999999999999999


Q ss_pred             cEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCcccceeecc------------
Q 001163          950 QLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLECLKQFVP------------ 1016 (1134)
Q Consensus       950 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~------------ 1016 (1134)
                      +|++||+-.... ....+.+.       ..+..++|+|||+.||+ +.||+|.+||.+.+.....+..            
T Consensus       501 TVRiW~if~s~~-~vEtl~i~-------sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D  572 (893)
T KOG0291|consen  501 TVRIWDIFSSSG-TVETLEIR-------SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETD  572 (893)
T ss_pred             eEEEEEeeccCc-eeeeEeec-------cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccc
Confidence            999999876321 12233332       24889999999999999 5899999999987766544331            


Q ss_pred             ------CCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCccc---------------CC---------
Q 001163         1017 ------REASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYL---------------PT--------- 1066 (1134)
Q Consensus      1017 ------~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~---------------~~--------- 1066 (1134)
                            .......+.+++|+||.++++|+..+.|++|++.++-++.++..+...               ..         
T Consensus       573 ~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e  652 (893)
T KOG0291|consen  573 RITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTE  652 (893)
T ss_pred             eeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccc
Confidence                  111457899999999999999999999999999998776555422111               00         


Q ss_pred             -------------C----------CCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCC
Q 001163         1067 -------------N----------PSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1103 (1134)
Q Consensus      1067 -------------~----------h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~ 1103 (1134)
                                   |          -.-.|.-..+.|+| .++.++.++..| |.||.+.+
T Consensus       653 ~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsP-tgraFAaatTEG-l~IYsld~  710 (893)
T KOG0291|consen  653 ESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSP-TGRAFAAATTEG-LLIYSLDT  710 (893)
T ss_pred             cccccccccccCCccccCCccccccCceEEEEEEEECC-CcCeeeeecccc-eEEEecCC
Confidence                         0          00123444779999 689999999998 67777643

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3.4e-50  Score=415.37  Aligned_cols=569  Identities=14%  Similarity=0.181  Sum_probs=440.0

Q ss_pred             EEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCC
Q 001163          361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKH  440 (1134)
Q Consensus       361 ~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg  440 (1134)
                      -+.-.|.|..++.+.+  ..|.+-++++.....                   ++.+|...++-..|||.|.|+|+|...|
T Consensus        23 ~ig~dpkgd~ilY~nG--ksv~ir~i~~~~~~~-------------------iYtEH~~~vtVAkySPsG~yiASGD~sG   81 (603)
T KOG0318|consen   23 IIGGDPKGDNILYTNG--KSVIIRNIDNPASVD-------------------IYTEHAHQVTVAKYSPSGFYIASGDVSG   81 (603)
T ss_pred             EeccCCCCCeEEEeCC--CEEEEEECCCcccee-------------------eeccccceeEEEEeCCCceEEeecCCcC
Confidence            3455677887777643  468888887765433                   3788999999999999999999999999


Q ss_pred             EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeC--CC--eEEEEECCCCceeEEecCCCcCEEEEecc
Q 001163          441 IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE--DR--VIKVWDAVTGTKQYIFEGHESPVYSICPH  516 (1134)
Q Consensus       441 ~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~--d~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~  516 (1134)
                      .|+|||....+.+ ...+++.-.++|..++|+.|+++  |+..+.  ++  .+.+||  +|.-+-.+.||...|+++.|-
T Consensus        82 ~vRIWdtt~~~hi-LKnef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~D--SG~SvGei~GhSr~ins~~~K  156 (603)
T KOG0318|consen   82 KVRIWDTTQKEHI-LKNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWD--SGNSVGEITGHSRRINSVDFK  156 (603)
T ss_pred             cEEEEeccCccee-eeeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEec--CCCccceeeccceeEeeeecc
Confidence            9999998764433 22357778899999999999995  444443  33  455565  888999999999999999997


Q ss_pred             ccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEec--
Q 001163          517 HKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH--  594 (1134)
Q Consensus       517 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~--  594 (1134)
                      ++.. -.+++|++|++|.+|+-...+....+..|..-|.++.|+|||.++++.+.|+    .+.+||-.+|+.+..+.  
T Consensus       157 psRP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDg----ki~iyDGktge~vg~l~~~  231 (603)
T KOG0318|consen  157 PSRP-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDG----KIYIYDGKTGEKVGELEDS  231 (603)
T ss_pred             CCCc-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCc----cEEEEcCCCccEEEEecCC
Confidence            7654 5799999999999997655555556666777999999999999999998755    59999999999999998  


Q ss_pred             -CCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCC-CCCcceEEEcCCCcEEEEEECCCcEEEEEcc
Q 001163          595 -GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGG-LQASPCIRFNKEGILLAVSTNDNGIKILANA  672 (1134)
Q Consensus       595 -~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~  672 (1134)
                       +|.. .|.+++|+||+..+++++.|.+++|||..+.+++.++..... ......+.|.  ...|++.+.+|+|.+++..
T Consensus       232 ~aHkG-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~  308 (603)
T KOG0318|consen  232 DAHKG-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPS  308 (603)
T ss_pred             CCccc-cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEeccc
Confidence             6665 899999999999999999999999999999999999875422 1122244454  5688899999999999887


Q ss_pred             CCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccc
Q 001163          673 DGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSR  752 (1134)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  752 (1134)
                      +.. ..+.+.                                                                      
T Consensus       309 d~~-~~~~i~----------------------------------------------------------------------  317 (603)
T KOG0318|consen  309 DPS-VLKVIS----------------------------------------------------------------------  317 (603)
T ss_pred             CCC-hhheec----------------------------------------------------------------------
Confidence            662 332222                                                                      


Q ss_pred             eeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcc
Q 001163          753 IWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGIL  832 (1134)
Q Consensus       753 iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  832 (1134)
                                           +|...|++++.+||+++|++++.||.|.-|+...                      |..
T Consensus       318 ---------------------GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~----------------------g~~  354 (603)
T KOG0318|consen  318 ---------------------GHNKSITALTVSPDGKTIYSGSYDGHINSWDSGS----------------------GTS  354 (603)
T ss_pred             ---------------------ccccceeEEEEcCCCCEEEeeccCceEEEEecCC----------------------ccc
Confidence                                 4888999999999999999999999999996543                      322


Q ss_pred             cccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEE--ecCCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 001163          833 MTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTT--FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQ  910 (1134)
Q Consensus       833 ~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~--~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~  910 (1134)
                      -.  +.+.+|...|.+++.+..+.++.++-|.++++.++.....-..  ++ ......+++..+ ++.+++..+.++.+.
T Consensus       355 ~~--~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~-lg~QP~~lav~~-d~~~avv~~~~~iv~  430 (603)
T KOG0318|consen  355 DR--LAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVK-LGSQPKGLAVLS-DGGTAVVACISDIVL  430 (603)
T ss_pred             cc--cccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceee-cCCCceeEEEcC-CCCEEEEEecCcEEE
Confidence            22  3233599999999999888888777799999998854433222  12 222334888888 666666666555444


Q ss_pred             EEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCC
Q 001163          911 IYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQT  990 (1134)
Q Consensus       911 iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~  990 (1134)
                      +=+...   +.... -.-...+++++|++..++.|+.|++|.||.+..++........   .|.   ..+++++||||+.
T Consensus       431 l~~~~~---~~~~~-~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~---~h~---a~iT~vaySpd~~  500 (603)
T KOG0318|consen  431 LQDQTK---VSSIP-IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLL---EHR---AAITDVAYSPDGA  500 (603)
T ss_pred             EecCCc---ceeec-cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeee---ccc---CCceEEEECCCCc
Confidence            433322   11221 2233678999999999999999999999999987643322222   222   5799999999999


Q ss_pred             EEEEE-eeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCC
Q 001163          991 HLLAV-HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPS 1069 (1134)
Q Consensus       991 ~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~ 1069 (1134)
                      |||++ ..+.+.+||+.+.+.....- .-|+..|.+++||||..++|||+.|..|.||+++.......+.      ..|.
T Consensus       501 yla~~Da~rkvv~yd~~s~~~~~~~w-~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik------nAH~  573 (603)
T KOG0318|consen  501 YLAAGDASRKVVLYDVASREVKTNRW-AFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK------NAHL  573 (603)
T ss_pred             EEEEeccCCcEEEEEcccCceeccee-eeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEec------cccc
Confidence            99997 67999999999888732222 2589999999999999999999999999999998766542222      2477


Q ss_pred             CCceeEEEEecCCCCCEEEEEecCCcEEEEeCC
Q 001163         1070 LRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPL 1102 (1134)
Q Consensus      1070 ~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~ 1102 (1134)
                      ..|+.+.+.    |...+++.+.|..|++|.++
T Consensus       574 ~gVn~v~wl----de~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  574 GGVNSVAWL----DESTVVSSGQDANIKVWNVT  602 (603)
T ss_pred             cCceeEEEe----cCceEEeccCcceeEEeccc
Confidence            889988544    57899999999999999875

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.1e-48  Score=402.07  Aligned_cols=534  Identities=15%  Similarity=0.231  Sum_probs=425.6

Q ss_pred             ecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001163          354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF  433 (1134)
Q Consensus       354 ~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l  433 (1134)
                      +|...++-..|||.|. ++|+|...|+|+|||....+.+...+|                 .--.++|..++|++|++++
T Consensus        57 EH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKnef-----------------~v~aG~I~Di~Wd~ds~RI  118 (603)
T KOG0318|consen   57 EHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNEF-----------------QVLAGPIKDISWDFDSKRI  118 (603)
T ss_pred             cccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeeee-----------------eecccccccceeCCCCcEE
Confidence            4899999999999998 569999999999999987665544443                 3356799999999999999


Q ss_pred             EEEeCC--C--EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcC
Q 001163          434 GVAYSK--H--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESP  509 (1134)
Q Consensus       434 as~s~d--g--~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~  509 (1134)
                      ++.+..  .  .+.+||  +|..+.   .+.||...|++++|-|.-.. .++||+.|++|.+++=.-.+...+++.|..-
T Consensus       119 ~avGEGrerfg~~F~~D--SG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~HskF  192 (603)
T KOG0318|consen  119 AAVGEGRERFGHVFLWD--SGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFREHSKF  192 (603)
T ss_pred             EEEecCccceeEEEEec--CCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeecccccccc
Confidence            887543  2  355565  444444   68999999999999987665 8999999999999997777778889999999


Q ss_pred             EEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec---CCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCC
Q 001163          510 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD---APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE  586 (1134)
Q Consensus       510 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~  586 (1134)
                      |.++.|+|  ||.++++++.||.|.+||-.+++....+.   .|.+.|.+++|+||+..+++++.|+    .+++||..+
T Consensus       193 V~~VRysP--DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk----t~KIWdVs~  266 (603)
T KOG0318|consen  193 VNCVRYSP--DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK----TIKIWDVST  266 (603)
T ss_pred             eeeEEECC--CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCc----eEEEEEeec
Confidence            99999965  46999999999999999999998888887   7888999999999999999998755    599999999


Q ss_pred             CeeEEEecCCCC--CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCC
Q 001163          587 GAVKRTYHGLGK--RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN  664 (1134)
Q Consensus       587 ~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg  664 (1134)
                      .++++++.....  .....+.|-  +..|++.+.+|.|.+++......+..+.+|  ...|+++..+|++.+|++|+.||
T Consensus       267 ~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GH--nK~ITaLtv~~d~~~i~SgsyDG  342 (603)
T KOG0318|consen  267 NSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGH--NKSITALTVSPDGKTIYSGSYDG  342 (603)
T ss_pred             cceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheeccc--ccceeEEEEcCCCCEEEeeccCc
Confidence            999999876543  122233443  678999999999999999999988888865  77999999999999999999999


Q ss_pred             cEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccc
Q 001163          665 GIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIA  744 (1134)
Q Consensus       665 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  744 (1134)
                      .|.-|+..++...                                                                   
T Consensus       343 ~I~~W~~~~g~~~-------------------------------------------------------------------  355 (603)
T KOG0318|consen  343 HINSWDSGSGTSD-------------------------------------------------------------------  355 (603)
T ss_pred             eEEEEecCCcccc-------------------------------------------------------------------
Confidence            9999998876210                                                                   


Q ss_pred             cccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcc
Q 001163          745 DEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQL  824 (1134)
Q Consensus       745 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~  824 (1134)
                                              .+...+|...|.+++.+..+. +++.+.|.++++.++....+..            
T Consensus       356 ------------------------~~~g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~------------  398 (603)
T KOG0318|consen  356 ------------------------RLAGKGHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTK------------  398 (603)
T ss_pred             ------------------------ccccccccceEEEEeecCCCc-EEEEecCCeEEEEecccCcccc------------
Confidence                                    011123888899998887666 7777778788887665322110            


Q ss_pred             cCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEe
Q 001163          825 WQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGM  904 (1134)
Q Consensus       825 ~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~  904 (1134)
                           .....       ......+++..+|+.+++.+.++.|.+..-.+  .+.+.. ..-...+++++| ++..+|+|+
T Consensus       399 -----~~~~~-------lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~--~~~~~~-~~y~~s~vAv~~-~~~~vaVGG  462 (603)
T KOG0318|consen  399 -----SEVVK-------LGSQPKGLAVLSDGGTAVVACISDIVLLQDQT--KVSSIP-IGYESSAVAVSP-DGSEVAVGG  462 (603)
T ss_pred             -----cceee-------cCCCceeEEEcCCCCEEEEEecCcEEEEecCC--cceeec-cccccceEEEcC-CCCEEEEec
Confidence                 00000       12334489999999888888877666665222  222222 345678999999 999999999


Q ss_pred             CCCcEEEEEcccceE--EEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceE
Q 001163          905 EDSSIQIYNVRVDEV--KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTR  982 (1134)
Q Consensus       905 ~dg~i~iwd~~~~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  982 (1134)
                      .|+.|+||.+..++.  ...+..|.++|++++||||+.+||++...+.+.+||+.+.+...    ..-..|.   ..|.+
T Consensus       463 ~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~----~~w~FHt---akI~~  535 (603)
T KOG0318|consen  463 QDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKT----NRWAFHT---AKINC  535 (603)
T ss_pred             ccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceec----ceeeeee---eeEEE
Confidence            999999999987653  34566799999999999999999999999999999999866311    1111122   57999


Q ss_pred             EEEcCCCCEEEE-EeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecC
Q 001163          983 VQFHLDQTHLLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTAS 1050 (1134)
Q Consensus       983 l~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~ 1050 (1134)
                      ++|+|+..++|+ +-|..|.||+++.....-.+ ..+|...|+.+.|- |...|++.+.|..|++|++.
T Consensus       536 ~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~i-knAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  536 VAWSPNNKLVATGSLDTNVIIYSVKKPAKHIII-KNAHLGGVNSVAWL-DESTVVSSGQDANIKVWNVT  602 (603)
T ss_pred             EEeCCCceEEEeccccceEEEEEccChhhheEe-ccccccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence            999999999999 58999999999876655333 35788889999997 67789999999999999874

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.8e-49  Score=423.16  Aligned_cols=582  Identities=16%  Similarity=0.239  Sum_probs=447.7

Q ss_pred             cceeeeEeCCCCCCcccccCCC-------CCceeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeee
Q 001163          323 VNILPVAYTPQSLGQSSYSTDD-------LPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVK  395 (1134)
Q Consensus       323 ~~i~~~~~s~~~~~l~~~~~d~-------~~~~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~  395 (1134)
                      .+|.+++.||+|..+....-.+       ..+.+++.+..+.+|.|++|||||+. +|+|. ...+.||.......-.-.
T Consensus        56 ~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng~~-fav~~-gn~lqiw~~P~~~~~~~~  133 (893)
T KOG0291|consen   56 YNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIKFSPNGKF-FAVGC-GNLLQIWHAPGEIKNEFN  133 (893)
T ss_pred             CceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEEECCCCcE-EEEEe-cceeEEEecCcchhcccC
Confidence            4689999999998866554432       35667788889999999999999994 45543 457999997654321111


Q ss_pred             ceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCC
Q 001163          396 SFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPN  475 (1134)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~  475 (1134)
                      .|           .....+.||-..|+++.||.|.++|++|+.|.+++||+++..+.+.. ..+.+|.+.|.++-|..+.
T Consensus       134 pF-----------vl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~-~~l~gHkd~VvacfF~~~~  201 (893)
T KOG0291|consen  134 PF-----------VLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFT-YALNGHKDYVVACFFGANS  201 (893)
T ss_pred             cc-----------eEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccce-EeccCCCcceEEEEeccCc
Confidence            11           12234789999999999999999999999999999999998776443 3689999999999999988


Q ss_pred             CceEEEEEeCCCeEEEEECCC-----------------------Cce-----e------EEecCCCcCEEEEeccccCCc
Q 001163          476 KQLSVVTCGEDRVIKVWDAVT-----------------------GTK-----Q------YIFEGHESPVYSICPHHKENI  521 (1134)
Q Consensus       476 ~~~~l~s~s~d~~i~iwd~~~-----------------------~~~-----~------~~~~~h~~~v~~~~~~~~~~~  521 (1134)
                      .  -++|.+.||.+.+|....                       ++.     .      +-+......|++.+|++..  
T Consensus       202 ~--~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t--  277 (893)
T KOG0291|consen  202 L--DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGT--  277 (893)
T ss_pred             c--eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCc--
Confidence            8  699999999999998761                       111     1      1122234678888887765  


Q ss_pred             cEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCce
Q 001163          522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSV  601 (1134)
Q Consensus       522 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v  601 (1134)
                      +.|++|-..|...+|.+.....+..+.....+|..++|+..|.+++.++.   .-+++.+|+..+...+.+..+|.. .+
T Consensus       278 ~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~---klgQLlVweWqsEsYVlKQQgH~~-~i  353 (893)
T KOG0291|consen  278 NLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS---KLGQLLVWEWQSESYVLKQQGHSD-RI  353 (893)
T ss_pred             eEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC---ccceEEEEEeeccceeeecccccc-ce
Confidence            78999999999999999998888888888889999999999999999874   356799999999988988899987 89


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEe
Q 001163          602 GVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTV  681 (1134)
Q Consensus       602 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  681 (1134)
                      .+++++|||.++++|++||.|+|||..+|-++.++..|  ...|+.+.|+..|+.+++.+-||+|+.||+... +..+++
T Consensus       354 ~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteH--ts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY-rNfRTf  430 (893)
T KOG0291|consen  354 TSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEH--TSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY-RNFRTF  430 (893)
T ss_pred             eeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccC--CCceEEEEEEecCCEEEEeecCCeEEeeeeccc-ceeeee
Confidence            99999999999999999999999999999999999866  779999999999999999999999999999876 555555


Q ss_pred             ccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCC
Q 001163          682 ESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITE  761 (1134)
Q Consensus       682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~  761 (1134)
                      ..+                                                                             
T Consensus       431 t~P-----------------------------------------------------------------------------  433 (893)
T KOG0291|consen  431 TSP-----------------------------------------------------------------------------  433 (893)
T ss_pred             cCC-----------------------------------------------------------------------------
Confidence            432                                                                             


Q ss_pred             ccceeccccCCccccccEEEEEEecCCceeeeeccCC-eEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCC
Q 001163          762 PSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNA-VHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDT  840 (1134)
Q Consensus       762 ~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  840 (1134)
                                   ......+++..|.|..+++|+.|. .|.                      +|++.+|+++.. +.| 
T Consensus       434 -------------~p~QfscvavD~sGelV~AG~~d~F~If----------------------vWS~qTGqllDi-LsG-  476 (893)
T KOG0291|consen  434 -------------EPIQFSCVAVDPSGELVCAGAQDSFEIF----------------------VWSVQTGQLLDI-LSG-  476 (893)
T ss_pred             -------------CceeeeEEEEcCCCCEEEeeccceEEEE----------------------EEEeecCeeeeh-hcC-
Confidence                         234567889999999999998873 344                      456777877765 555 


Q ss_pred             CCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCC-eEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccce
Q 001163          841 NPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTF-KTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE  918 (1134)
Q Consensus       841 ~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~  918 (1134)
                       |+++|.+++|+|+|..|++++ |.+|++||+-.. ..+.++. +...+..++|+| +|+-||+++-||.|.+||...+.
T Consensus       477 -HEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrP-dG~elaVaTldgqItf~d~~~~~  553 (893)
T KOG0291|consen  477 -HEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRP-DGKELAVATLDGQITFFDIKEAV  553 (893)
T ss_pred             -CCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcC-CCCeEEEEEecceEEEEEhhhce
Confidence             999999999999999999999 999999998654 3444454 778899999999 99999999999999999998765


Q ss_pred             EEEeccC--------------------ccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCC-
Q 001163          919 VKTKLKG--------------------HQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASA-  977 (1134)
Q Consensus       919 ~~~~l~~--------------------h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-  977 (1134)
                      .+..+.+                    .....+.+++|+||.++++||....|++|++.++-..+.  .++...+.-.+ 
T Consensus       554 q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkk--fqiS~N~sLdg~  631 (893)
T KOG0291|consen  554 QVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKK--FQISDNRSLDGV  631 (893)
T ss_pred             eeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeee--EEeccccchhHH
Confidence            5533322                    235688999999999999999999999999998654332  22222111100 


Q ss_pred             -CCceEEEEcCCCCEEEEE-----eeceEEE-------EeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcE
Q 001163          978 -LADTRVQFHLDQTHLLAV-----HETQIAI-------YEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSV 1044 (1134)
Q Consensus       978 -~~v~~l~fs~dg~~l~~~-----~d~~i~i-------wd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i 1044 (1134)
                       ..+..=.+.+-|.+-++-     .++.|-+       +|+.+.+    +   ...=.|.++.|||.|+-+|.++..| +
T Consensus       632 ~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr----~---rpeIrv~sv~fsPtgraFAaatTEG-l  703 (893)
T KOG0291|consen  632 LEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRR----F---RPEIRVTSVQFSPTGRAFAAATTEG-L  703 (893)
T ss_pred             HHHhccccccccCCccccccccccccccccccCCccccCCccccc----c---CceEEEEEEEECCCcCeeeeecccc-e
Confidence             111222233333332221     0111111       0111110    0   0133688999999999999999988 8


Q ss_pred             EEeecCCCccee
Q 001163         1045 GVLTASTLRLRC 1056 (1134)
Q Consensus      1045 ~vwd~~~~~~~~ 1056 (1134)
                      .||.+++.-+.-
T Consensus       704 ~IYsld~~~~FD  715 (893)
T KOG0291|consen  704 LIYSLDTTILFD  715 (893)
T ss_pred             EEEecCCceEEc
Confidence            899988765543

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.5e-49  Score=420.67  Aligned_cols=573  Identities=16%  Similarity=0.226  Sum_probs=441.0

Q ss_pred             CCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEE
Q 001163          366 PVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLY  445 (1134)
Q Consensus       366 p~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iw  445 (1134)
                      ..|+++.+  +..-.|.+||+.+|+.....                 +...-...|+|++-+||.-+||+|..||.|+||
T Consensus        32 ~~Gr~va~--~a~E~vn~WdlRtge~~~~l-----------------~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif   92 (888)
T KOG0306|consen   32 GKGRAVAV--SALEQVNIWDLRTGEIEKKL-----------------ILLKKKAEVTCLRSSDDILLLAVGYADGSVQIF   92 (888)
T ss_pred             CCCcEEEE--eccccEeEEeeecchhhhhh-----------------hhhcccceEEEeeccCCcceEEEEecCceEEee
Confidence            34775543  33446999999999544310                 012344699999999999999999999999999


Q ss_pred             EccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEE
Q 001163          446 TYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIF  525 (1134)
Q Consensus       446 d~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~  525 (1134)
                      +..++..+.   ++.||...|+++.|...|.  .|+|||.|+.|.+||+-...-+..++||...|+..-|..  +..+++
T Consensus        93 ~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~--~~~~lv  165 (888)
T KOG0306|consen   93 SLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLN--GDSFLV  165 (888)
T ss_pred             ccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccC--CCeEEE
Confidence            999875444   7999999999999999999  799999999999999999999999999999999887754  337999


Q ss_pred             EecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC------------eeEEEe
Q 001163          526 STATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG------------AVKRTY  593 (1134)
Q Consensus       526 s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~------------~~~~~~  593 (1134)
                      +.+.|+.|++||+++..+......|.+.+..+++.+  +.+++++.+.    .+.+|++...            +...++
T Consensus       166 S~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~ds----e~~v~~L~~~~D~~~~~~~~s~~~~G~~  239 (888)
T KOG0306|consen  166 SVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDS----ELKVWELAFEDDEKETNRYISTKLRGTF  239 (888)
T ss_pred             EeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCC----ceEEEEeecccccccccccceeecccee
Confidence            999999999999999999999999999999999988  6777776544    3899988211            111122


Q ss_pred             cCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEe--------cC------------------------CC
Q 001163          594 HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID--------AD------------------------GG  641 (1134)
Q Consensus       594 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~------------------------~~  641 (1134)
                      .....+....+...+++.++++-+.|..+.++.+.+.+.+....        .+                        ..
T Consensus       240 ~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~  319 (888)
T KOG0306|consen  240 IRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRT  319 (888)
T ss_pred             eeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheec
Confidence            22222234456677788899999999999999986643221100        00                        00


Q ss_pred             CCCcceEEEcCCCc---EEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCC
Q 001163          642 LQASPCIRFNKEGI---LLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGE  718 (1134)
Q Consensus       642 ~~~v~~v~~sp~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  718 (1134)
                      ...+.++.|.|.+.   .|+. -.++++..|.++....                                          
T Consensus       320 ~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~------------------------------------------  356 (888)
T KOG0306|consen  320 SAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGK------------------------------------------  356 (888)
T ss_pred             hhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCC------------------------------------------
Confidence            12344555555332   2222 3344444444332100                                          


Q ss_pred             CCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCC
Q 001163          719 RTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNA  798 (1134)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg  798 (1134)
                                                               ..+...+.-.+...+|...|.++++|.+...+++++ ++
T Consensus       357 -----------------------------------------~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~  394 (888)
T KOG0306|consen  357 -----------------------------------------TSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GE  394 (888)
T ss_pred             -----------------------------------------CCccccccceeeeccchhheeEEEeecCceeeeecC-CC
Confidence                                                     000111111122245999999999999988666555 45


Q ss_pred             eEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEE
Q 001163          799 VHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM  877 (1134)
Q Consensus       799 ~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~  877 (1134)
                      .+++|+..                      +.+++.. +    ..+.+.+..|-|.++++++|. .|.+.+||+.+...+
T Consensus       395 SikiWn~~----------------------t~kciRT-i----~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~  447 (888)
T KOG0306|consen  395 SIKIWNRD----------------------TLKCIRT-I----TCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLV  447 (888)
T ss_pred             cEEEEEcc----------------------CcceeEE-e----ccccEEEEEecCCCceEEEeccCCceEEEEeehhhhh
Confidence            78888544                      4444432 2    234788999999999999999 799999999999999


Q ss_pred             EEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEccc-----ceEEEecc-------CccCceEEEEEeeCCCEEEEE
Q 001163          878 TTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV-----DEVKTKLK-------GHQKRITGLAFSNTLNVLVSS  945 (1134)
Q Consensus       878 ~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~-----~~~~~~l~-------~h~~~V~~l~~s~d~~~l~s~  945 (1134)
                      .+.++|.+.|..++.+| |++.+++|+.|.+|++||..-     |...+.+.       .-.+.|.|+.+||||++||.+
T Consensus       448 Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVs  526 (888)
T KOG0306|consen  448 ETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVS  526 (888)
T ss_pred             hhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEE
Confidence            99999999999999999 899999999999999999752     11111111       134679999999999999999


Q ss_pred             eCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCcccceeeccCCCccCEE
Q 001163          946 GADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLECLKQFVPREASGPIT 1024 (1134)
Q Consensus       946 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~ 1024 (1134)
                      =-|.+|+||-+++-+     +.-...||.   -+|.|+..|||++++++ +.|.+|+||-++-|.|-+.+.  +|.+.|.
T Consensus       527 LLdnTVkVyflDtlK-----FflsLYGHk---LPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f--AHdDSvm  596 (888)
T KOG0306|consen  527 LLDNTVKVYFLDTLK-----FFLSLYGHK---LPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF--AHDDSVM  596 (888)
T ss_pred             eccCeEEEEEeccee-----eeeeecccc---cceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh--cccCcee
Confidence            999999999999833     555666777   48999999999999999 589999999999999999998  8999999


Q ss_pred             EEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCC
Q 001163         1025 HATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1103 (1134)
Q Consensus      1025 ~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~ 1103 (1134)
                      ++.|-|+...+++++.|+.|+-||.+.-+.+..+.       +|...|+.++++  | +|.+++++|.|.+|++|+-..
T Consensus       597 ~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~-------~H~~ev~cLav~--~-~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  597 SVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD-------GHHSEVWCLAVS--P-NGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             EEEEcccceeEEEecCcceEEeechhhhhhheeec-------cchheeeeeEEc--C-CCCeEEeccCCceeEeeeccC
Confidence            99999999999999999999999999888877666       788999999554  7 789999999999999999865

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.3e-48  Score=415.62  Aligned_cols=534  Identities=14%  Similarity=0.207  Sum_probs=422.9

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la  434 (1134)
                      ....|+|+.-+|+.- ++|+|-.||.|+||+..++..+.+                   +.||...|+++.|...|.+||
T Consensus        64 ~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~t-------------------fngHK~AVt~l~fd~~G~rla  123 (888)
T KOG0306|consen   64 KKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILIT-------------------FNGHKAAVTTLKFDKIGTRLA  123 (888)
T ss_pred             ccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceeee-------------------ecccccceEEEEEcccCceEe
Confidence            445899999888886 789999999999999998865543                   789999999999999999999


Q ss_pred             EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEe
Q 001163          435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSIC  514 (1134)
Q Consensus       435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~  514 (1134)
                      +||.|+.|.+||+-...-+.   .+.||...|+.+-|..+.+  ++++.|.|+.|++||+.+..|..+.-.|.+.|++++
T Consensus       124 SGskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~  198 (888)
T KOG0306|consen  124 SGSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALV  198 (888)
T ss_pred             ecCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEEE
Confidence            99999999999997655333   6999999999999998667  899999999999999999999999999999999999


Q ss_pred             ccccCCccEEEEecCCCcEEEEecCCCCce------e------e-ecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEE
Q 001163          515 PHHKENIQFIFSTATDGKIKAWLYDNLGSR------V------D-YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE  581 (1134)
Q Consensus       515 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~------~------~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~  581 (1134)
                      +..    +.+++++.|+.+++|++....-.      .      . .....+....++..++++++++-+.|+    .+.+
T Consensus       199 ~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~----~~e~  270 (888)
T KOG0306|consen  199 LDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADK----VIEL  270 (888)
T ss_pred             Eec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchh----hhhh
Confidence            854    57999999999999998321110      0      0 111122344566777888888776543    3666


Q ss_pred             EeCCCCeeEE------------Eec--------------------C-CCCCceEEEEEcCCCC---EEEEEeCCCeEEEE
Q 001163          582 WNESEGAVKR------------TYH--------------------G-LGKRSVGVVQFDTTKN---RFLAAGDEFMIKFW  625 (1134)
Q Consensus       582 wd~~~~~~~~------------~~~--------------------~-~~~~~v~~~~~~~~~~---~l~~~~~dg~i~iw  625 (1134)
                      +.+.+.+.+.            ...                    . .....+.++.+-|.++   .++. -.++++..|
T Consensus       271 frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~y  349 (888)
T KOG0306|consen  271 FRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWY  349 (888)
T ss_pred             eeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEE
Confidence            6655321100            000                    0 0011455666666553   3333 467788888


Q ss_pred             EcCC-Cc------eeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhc
Q 001163          626 DMDN-VN------LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVK  698 (1134)
Q Consensus       626 d~~~-~~------~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  698 (1134)
                      .+.. +.      .+..+...+|...|.+++++.+...+++|+ .+.+.+|+..+. ++++++.                
T Consensus       350 sl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~-kciRTi~----------------  411 (888)
T KOG0306|consen  350 SLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTL-KCIRTIT----------------  411 (888)
T ss_pred             EeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCc-ceeEEec----------------
Confidence            7765 22      233455557788999999999887777665 569999999877 5555542                


Q ss_pred             ccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCcccccc
Q 001163          699 APAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMR  778 (1134)
Q Consensus       699 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  778 (1134)
                                                                                                   .+.
T Consensus       412 -----------------------------------------------------------------------------~~y  414 (888)
T KOG0306|consen  412 -----------------------------------------------------------------------------CGY  414 (888)
T ss_pred             -----------------------------------------------------------------------------ccc
Confidence                                                                                         235


Q ss_pred             EEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeE
Q 001163          779 VSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYV  858 (1134)
Q Consensus       779 i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l  858 (1134)
                      +.+..|-|.+++++.|..+|.+.+|++.                      +..++.. ++  +|.+.|+.++.+||++.+
T Consensus       415 ~l~~~Fvpgd~~Iv~G~k~Gel~vfdla----------------------S~~l~Et-i~--AHdgaIWsi~~~pD~~g~  469 (888)
T KOG0306|consen  415 ILASKFVPGDRYIVLGTKNGELQVFDLA----------------------SASLVET-IR--AHDGAIWSISLSPDNKGF  469 (888)
T ss_pred             EEEEEecCCCceEEEeccCCceEEEEee----------------------hhhhhhh-hh--ccccceeeeeecCCCCce
Confidence            6788899999999999999999998765                      2222221 22  399999999999999999


Q ss_pred             EEee-CCeEEEEEccC-----CeEE--------EEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEecc
Q 001163          859 MSAS-GGKISLFNMMT-----FKTM--------TTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK  924 (1134)
Q Consensus       859 a~~s-dg~i~lwd~~~-----~~~~--------~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~  924 (1134)
                      ++++ |.+|++||..-     +...        ++++ -...|.|+.+|| |+++||++--|.+++||-+++-+..-.+-
T Consensus       470 vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLY  547 (888)
T KOG0306|consen  470 VTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLY  547 (888)
T ss_pred             EEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeec
Confidence            9999 99999999732     1111        1222 456799999999 99999999999999999999999999999


Q ss_pred             CccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEE
Q 001163          925 GHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIY 1003 (1134)
Q Consensus       925 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iw 1003 (1134)
                      ||.-+|.|+.+|||+++++|||.|.+|++|-++-|.+     .+..-+|.   +.|.++.|-|+..++.+ |.|+.|+-|
T Consensus       548 GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDC-----HKS~fAHd---DSvm~V~F~P~~~~FFt~gKD~kvKqW  619 (888)
T KOG0306|consen  548 GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC-----HKSFFAHD---DSVMSVQFLPKTHLFFTCGKDGKVKQW  619 (888)
T ss_pred             ccccceeEEeccCCcCeEEeccCCCceEEeccccchh-----hhhhhccc---CceeEEEEcccceeEEEecCcceEEee
Confidence            9999999999999999999999999999999998774     33344444   57999999998888877 799999999


Q ss_pred             eCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcc
Q 001163         1004 EAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRL 1054 (1134)
Q Consensus      1004 d~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~ 1054 (1134)
                      |-...+++..+.  +|...|++++.+|+|.+++++|.|.+|++|.......
T Consensus       620 Dg~kFe~iq~L~--~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~  668 (888)
T KOG0306|consen  620 DGEKFEEIQKLD--GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEIL  668 (888)
T ss_pred             chhhhhhheeec--cchheeeeeEEcCCCCeEEeccCCceeEeeeccCcce
Confidence            999999999988  8999999999999999999999999999999766433

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.1e-50  Score=395.75  Aligned_cols=367  Identities=20%  Similarity=0.294  Sum_probs=296.3

Q ss_pred             cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163          414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD  493 (1134)
Q Consensus       414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd  493 (1134)
                      +.||.++|.|++|+|+|+.||+|+.|.++++||+.+.....   +..+|...|.|++|+|||+  .|+||+.||+|++||
T Consensus       111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwd  185 (480)
T KOG0271|consen  111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWD  185 (480)
T ss_pred             cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEec
Confidence            68999999999999999999999999999999999977554   7899999999999999999  799999999999999


Q ss_pred             CCCCcee-EEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecC
Q 001163          494 AVTGTKQ-YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN  572 (1134)
Q Consensus       494 ~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~  572 (1134)
                      .++|+++ ..+.+|...|++++|.|-.                                       ..|.+++|++++.|
T Consensus       186 pktg~~~g~~l~gH~K~It~Lawep~h---------------------------------------l~p~~r~las~skD  226 (480)
T KOG0271|consen  186 PKTGQQIGRALRGHKKWITALAWEPLH---------------------------------------LVPPCRRLASSSKD  226 (480)
T ss_pred             CCCCCcccccccCcccceeEEeecccc---------------------------------------cCCCccceecccCC
Confidence            9999876 5789999999999986532                                       12344455555443


Q ss_pred             CCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcC
Q 001163          573 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK  652 (1134)
Q Consensus       573 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp  652 (1134)
                      +    .++|||+..++++..+.+|.. .|+++.|..+| ++++|+.|++|++|+...|.+...+.+|+|  .|+.++.+.
T Consensus       227 g----~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lalsT  298 (480)
T KOG0271|consen  227 G----SVRIWDTKLGTCVRTLSGHTA-SVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLALST  298 (480)
T ss_pred             C----CEEEEEccCceEEEEeccCcc-ceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccch--heeeeeccc
Confidence            3    266677777777888888887 99999998765 999999999999999999999999997755  899998886


Q ss_pred             CCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCC
Q 001163          653 EGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSND  732 (1134)
Q Consensus       653 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  732 (1134)
                      +- .|-+|..|.+=+-         .+...    +........+.                                   
T Consensus       299 dy-~LRtgaf~~t~~~---------~~~~s----e~~~~Al~rY~-----------------------------------  329 (480)
T KOG0271|consen  299 DY-VLRTGAFDHTGRK---------PKSFS----EEQKKALERYE-----------------------------------  329 (480)
T ss_pred             hh-hhhcccccccccc---------CCChH----HHHHHHHHHHH-----------------------------------
Confidence            52 2333333321111         01010    00111111110                                   


Q ss_pred             CccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCc
Q 001163          733 SRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNS  812 (1134)
Q Consensus       733 ~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~  812 (1134)
                                                                   .    ..-..+..+++++.|.++.+|+-.      
T Consensus       330 ---------------------------------------------~----~~~~~~erlVSgsDd~tlflW~p~------  354 (480)
T KOG0271|consen  330 ---------------------------------------------A----VLKDSGERLVSGSDDFTLFLWNPF------  354 (480)
T ss_pred             ---------------------------------------------H----hhccCcceeEEecCCceEEEeccc------
Confidence                                                         0    001124668999999999988522      


Q ss_pred             ccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEE
Q 001163          813 TGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLA  891 (1134)
Q Consensus       813 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~  891 (1134)
                                     ++.+++.. +.  +|..-|..+.||||++++|+++ |.+|++||..+|+.+.+|++|-+.|..++
T Consensus       355 ---------------~~kkpi~r-mt--gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqva  416 (480)
T KOG0271|consen  355 ---------------KSKKPITR-MT--GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVA  416 (480)
T ss_pred             ---------------ccccchhh-hh--chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEE
Confidence                           22223332 33  3999999999999999999999 99999999999999999999999999999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 001163          892 FHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS  955 (1134)
Q Consensus       892 ~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd  955 (1134)
                      |+. |.++|++|+.|.++++|++.+.++...+.||.++|.++.|+|||..+++|+.|..+++|.
T Consensus       417 wsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  417 WSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             ecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            999 999999999999999999999999999999999999999999999999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-49  Score=394.89  Aligned_cols=325  Identities=22%  Similarity=0.348  Sum_probs=289.4

Q ss_pred             ecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001163          354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF  433 (1134)
Q Consensus       354 ~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l  433 (1134)
                      +|.+.|.|++|||+|++ ||+|+.|.++++||+.+...+.+                   .++|...|.|++|||||+.|
T Consensus       113 GH~e~Vl~~~fsp~g~~-l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~~WVlcvawsPDgk~i  172 (480)
T KOG0271|consen  113 GHGEAVLSVQFSPTGSR-LVTGSGDTTVRLWDLDTETPLFT-------------------CKGHKNWVLCVAWSPDGKKI  172 (480)
T ss_pred             CCCCcEEEEEecCCCce-EEecCCCceEEeeccCCCCccee-------------------ecCCccEEEEEEECCCcchh
Confidence            49999999999999996 58999999999999999876654                   78999999999999999999


Q ss_pred             EEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEec-----CCCceEEEEEeCCCeEEEEECCCCceeEEecCCCc
Q 001163          434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY-----PNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES  508 (1134)
Q Consensus       434 as~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-----~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~  508 (1134)
                      |+|+.||+|++||.++|+++..  .|.+|...|++++|.|     ..+  +|++++.||+|+|||+..+.++..+.+|+.
T Consensus       173 ASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~~~lsgHT~  248 (480)
T KOG0271|consen  173 ASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCVRTLSGHTA  248 (480)
T ss_pred             hccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEEEEeccCcc
Confidence            9999999999999999987654  6899999999999976     445  799999999999999999999999999999


Q ss_pred             CEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEEC-----------cCCC-------------
Q 001163          509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYS-----------ADGA-------------  564 (1134)
Q Consensus       509 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s-----------~~~~-------------  564 (1134)
                      +|+|++|-  ++ .+|++|+.|++|++|+...+.....+.+|.+.|+.++.+           |.++             
T Consensus       249 ~VTCvrwG--G~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al  325 (480)
T KOG0271|consen  249 SVTCVRWG--GE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKAL  325 (480)
T ss_pred             ceEEEEEc--CC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHH
Confidence            99999983  23 699999999999999999888888999999999988876           2233             


Q ss_pred             ------------EEEEEecCCCCCeEEEEEeCCCC-eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc
Q 001163          565 ------------RLFSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN  631 (1134)
Q Consensus       565 ------------~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  631 (1134)
                                  +|++++.|    ..+.+|+.... +++..+.+|.. .|+.+.|+||+.++++++.|..|++||.++|+
T Consensus       326 ~rY~~~~~~~~erlVSgsDd----~tlflW~p~~~kkpi~rmtgHq~-lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk  400 (480)
T KOG0271|consen  326 ERYEAVLKDSGERLVSGSDD----FTLFLWNPFKSKKPITRMTGHQA-LVNHVSFSPDGRYIASASFDKSVKLWDGRTGK  400 (480)
T ss_pred             HHHHHhhccCcceeEEecCC----ceEEEecccccccchhhhhchhh-heeeEEECCCccEEEEeecccceeeeeCCCcc
Confidence                        48888754    45999997654 58889999988 89999999999999999999999999999999


Q ss_pred             eeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccc
Q 001163          632 LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANAN  711 (1134)
Q Consensus       632 ~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  711 (1134)
                      .+.++.+|  ...|+.++|+.|.++|++|+.|.++++|++.+. .+...+                              
T Consensus       401 ~lasfRGH--v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk-Kl~~DL------------------------------  447 (480)
T KOG0271|consen  401 FLASFRGH--VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK-KLKQDL------------------------------  447 (480)
T ss_pred             hhhhhhhc--cceeEEEEeccCccEEEEcCCCceEEEEEeeee-eecccC------------------------------
Confidence            99999865  779999999999999999999999999998765 222211                              


Q ss_pred             cccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCcee
Q 001163          712 VGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAI  791 (1134)
Q Consensus       712 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l  791 (1134)
                                                                                   .+|...|.++.|+|||..+
T Consensus       448 -------------------------------------------------------------pGh~DEVf~vDwspDG~rV  466 (480)
T KOG0271|consen  448 -------------------------------------------------------------PGHADEVFAVDWSPDGQRV  466 (480)
T ss_pred             -------------------------------------------------------------CCCCceEEEEEecCCCcee
Confidence                                                                         1388899999999999999


Q ss_pred             eeeccCCeEEeee
Q 001163          792 LALASNAVHKLWK  804 (1134)
Q Consensus       792 ~~~~~dg~i~vw~  804 (1134)
                      ++++.|..+++|.
T Consensus       467 ~sggkdkv~~lw~  479 (480)
T KOG0271|consen  467 ASGGKDKVLRLWR  479 (480)
T ss_pred             ecCCCceEEEeec
Confidence            9999999999994

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=3.8e-43  Score=373.83  Aligned_cols=621  Identities=14%  Similarity=0.153  Sum_probs=405.0

Q ss_pred             EEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEe--C
Q 001163          361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY--S  438 (1134)
Q Consensus       361 ~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s--~  438 (1134)
                      .++.+|... ++|. -....|.+||++...+-                   +++..|..+++|++||++|+|+|+|-  .
T Consensus        42 gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ~-------------------hlvnssRk~~t~vAfS~~GryvatGEcG~  100 (1080)
T KOG1408|consen   42 GLASVPCSG-LCAY-PAGCVVVLFNVDSCTQS-------------------HLVNSSRKPLTCVAFSQNGRYVATGECGR  100 (1080)
T ss_pred             ccccccccc-ceee-ccCcEEEEEcccccchh-------------------heecccCcceeEEEEcCCCcEEEecccCC
Confidence            455566554 2221 12346889998765433                   34677889999999999999999984  6


Q ss_pred             CCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeC--CCeEEEEECCCCceeEEecCCCcCEEEEecc
Q 001163          439 KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE--DRVIKVWDAVTGTKQYIFEGHESPVYSICPH  516 (1134)
Q Consensus       439 dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~  516 (1134)
                      ...++||++.....+.   .+..|+..|+|++|+|.++  ++++.+.  |-.|.+||++..-....- .-...|..++| 
T Consensus       101 ~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asn-kiss~Vsav~f-  173 (1080)
T KOG1408|consen  101 TPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASN-KISSVVSAVAF-  173 (1080)
T ss_pred             Cccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhccccccc-ccceeEEEEEE-
Confidence            6789999999877555   6888999999999999999  7887665  557788987655433222 24566788887 


Q ss_pred             ccCCccEEEEecCCCcEEEEecCCCCceee---ecCCCCCeeEEEE------------CcCCCEEEEEecCCCCCeEEEE
Q 001163          517 HKENIQFIFSTATDGKIKAWLYDNLGSRVD---YDAPGHSSTMMAY------------SADGARLFSCGTNKEGESYLVE  581 (1134)
Q Consensus       517 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~---~~~~~~~v~~~~~------------s~~~~~l~~~~~~~~~~~~i~~  581 (1134)
                       +.+|.++++.+ +..|++|.++.......   +.+...-.-.+.+            ..+..+.++.      .+.+.-
T Consensus       174 -sEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~------qGhLvE  245 (1080)
T KOG1408|consen  174 -SEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITA------QGHLVE  245 (1080)
T ss_pred             -ccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEec------ccceee
Confidence             56668888877 48999999886552111   1111100001110            0011111111      111211


Q ss_pred             EeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecC----------------------
Q 001163          582 WNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD----------------------  639 (1134)
Q Consensus       582 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------------------  639 (1134)
                      |  .+.+++.++.........+++.+  .+++++|+.+|.|++|+..+-..+.++...                      
T Consensus       246 F--SsRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~  321 (1080)
T KOG1408|consen  246 F--SSRRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSP  321 (1080)
T ss_pred             e--chhhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCc
Confidence            1  22233333322222244566665  579999999999999998765544333210                      


Q ss_pred             CCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeE--EEeccCcccccccchhhhhcccccccccccccccccCcC
Q 001163          640 GGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLL--RTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLG  717 (1134)
Q Consensus       640 ~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  717 (1134)
                      .......++.|++....|.+...|..++|||+.+-.+.-  ..+..|...++.+..                        
T Consensus       322 a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~------------------------  377 (1080)
T KOG1408|consen  322 AIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVEN------------------------  377 (1080)
T ss_pred             ccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeecc------------------------
Confidence            011123477899999999999999999999997652221  112222222111100                        


Q ss_pred             CCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccC
Q 001163          718 ERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASN  797 (1134)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~d  797 (1134)
                            .+.-.-.+... .....-++++++|++|++|++.........+.-.              ++.+-..++.  .|
T Consensus       378 ------~p~nv~~~~~a-clp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNi--------------ls~~l~ki~y--~d  434 (1080)
T KOG1408|consen  378 ------LPCNVHSPTAA-CLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNI--------------LSANLSKIPY--ED  434 (1080)
T ss_pred             ------ccccccCcccc-cCCccceeEecCCCcEEEeecccccccceeeccc--------------chhhhhcCcc--cc
Confidence                  00000000000 1111224555555666666554321111111000              0000000000  00


Q ss_pred             CeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeE
Q 001163          798 AVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT  876 (1134)
Q Consensus       798 g~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~  876 (1134)
                      +...+              +.....-++|-......       .....++++++||+|++||+|. .|.++||++...+.
T Consensus       435 ~~~q~--------------~~d~~~~~fdka~~s~~-------d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~  493 (1080)
T KOG1408|consen  435 STQQI--------------MHDASAGIFDKALVSTC-------DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY  493 (1080)
T ss_pred             Cchhh--------------hhhccCCcccccchhhc-------CcccceEEEEECCCcceecccCccCceEEEEehhhhh
Confidence            00000              00000111121111111       1466799999999999999999 79999999999999


Q ss_pred             EEEecCCCCCeEEEEEcCC--CCcEEEEEeCCCcEEEEEccc-ceEEEeccCccCceEEEEEeeCC--CEEEEEeCCCcE
Q 001163          877 MTTFMPPPPAATFLAFHPQ--DNNIIAIGMEDSSIQIYNVRV-DEVKTKLKGHQKRITGLAFSNTL--NVLVSSGADSQL  951 (1134)
Q Consensus       877 ~~~~~~~~~~v~~l~~sp~--~~~~la~g~~dg~i~iwd~~~-~~~~~~l~~h~~~V~~l~~s~d~--~~l~s~s~Dg~i  951 (1134)
                      ...+..|..+|.|+.|+-.  ..++||+++.|+.|+|||+.. ..+++++.+|+..|+++.|.-.|  ..++++|.|+.|
T Consensus       494 ~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksi  573 (1080)
T KOG1408|consen  494 TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSI  573 (1080)
T ss_pred             hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhh
Confidence            9999999999999999852  357999999999999999864 36678999999999999999887  789999999977


Q ss_pred             EEEECCCCccccceeeeecCCC-CCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCcccceeecc-CCCccCEEEEEE
Q 001163          952 CVWSTDGWEKQASKFLTIPNGR-TASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLECLKQFVP-REASGPITHATY 1028 (1134)
Q Consensus       952 ~iwd~~~~~~~~~~~~~~~~~~-~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~-~~h~~~v~~~~~ 1028 (1134)
                      .+-......  .  ......++ ......+..++..|..+++++ +.|+.|+||++.+++..+.|.. ++|.+....+..
T Consensus       574 mFr~~qk~~--~--g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~l  649 (1080)
T KOG1408|consen  574 MFRVNQKAS--S--GRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVIL  649 (1080)
T ss_pred             heehhcccc--C--ceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEE
Confidence            654332110  0  11111111 112246889999999999999 6999999999999999999984 356788889999


Q ss_pred             ccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCC
Q 001163         1029 SCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1103 (1134)
Q Consensus      1029 s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~ 1103 (1134)
                      .|.|-||++.+.|+++.++|..+|+...+..       ||+..|+.+  .|.+ |.+.|++.+.||.|.||.++.
T Consensus       650 DPSgiY~atScsdktl~~~Df~sgEcvA~m~-------GHsE~VTG~--kF~n-DCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  650 DPSGIYLATSCSDKTLCFVDFVSGECVAQMT-------GHSEAVTGV--KFLN-DCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             CCCccEEEEeecCCceEEEEeccchhhhhhc-------Ccchheeee--eecc-cchhheeecCCceEEEEECch
Confidence            9999999999999999999999999988776       899999999  7878 799999999999999999974

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=9.8e-38  Score=340.55  Aligned_cols=584  Identities=16%  Similarity=0.175  Sum_probs=436.5

Q ss_pred             EEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCE
Q 001163          362 MDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHI  441 (1134)
Q Consensus       362 v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~  441 (1134)
                      ..|..-|..+.++.+.+.+..+||.+.-..+..                   -..+...|+|++=..+  ++.+++.. .
T Consensus        39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~--~vy~A~g~-~   96 (910)
T KOG1539|consen   39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKD--YVYVASGN-K   96 (910)
T ss_pred             eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCc--eEEEecCc-E
Confidence            566667777888999999999999987665542                   2457889999987555  44444333 3


Q ss_pred             EEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC-ceeE---Ee-cCCCcCEEEEecc
Q 001163          442 VHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQY---IF-EGHESPVYSICPH  516 (1134)
Q Consensus       442 v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~---~~-~~h~~~v~~~~~~  516 (1134)
                      |.+|-  .|+.++.  .+.+|.+.|.-+.-  =|.  .++++..++.+.||+...+ +.++   ++ +.....|+++. +
T Consensus        97 i~~~~--rgk~i~~--~~~~~~a~v~~l~~--fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H  167 (910)
T KOG1539|consen   97 IYAYA--RGKHIRH--TTLLHGAKVHLLLP--FGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H  167 (910)
T ss_pred             EEEEE--ccceEEE--EeccccceEEEEee--ecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence            55554  4444443  46678878877654  367  6899999999999998874 2211   22 22223388775 5


Q ss_pred             ccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCC
Q 001163          517 HKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL  596 (1134)
Q Consensus       517 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~  596 (1134)
                      |+.--+.++.|+.+|.+.+|++++++....+......|+++.-+|-=..++.|..+|    .|.+++++.++.+.+|+..
T Consensus       168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G----~ViifNlK~dkil~sFk~d  243 (910)
T KOG1539|consen  168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENG----TVIIFNLKFDKILMSFKQD  243 (910)
T ss_pred             chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCc----eEEEEEcccCcEEEEEEcc
Confidence            555456789999999999999999999999999889999999999988999987644    6999999999999999987


Q ss_pred             CCCceEEEEEcCCCCEEEE-EeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCc
Q 001163          597 GKRSVGVVQFDTTKNRFLA-AGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGI  675 (1134)
Q Consensus       597 ~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~  675 (1134)
                      .. .|+.++|..||+.+++ ++..|.+.+||++..+.+..+.. .|.+.+....|-|....+++++.|+.+++|-..++.
T Consensus       244 ~g-~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~n-ah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~d  321 (910)
T KOG1539|consen  244 WG-RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRN-AHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGD  321 (910)
T ss_pred             cc-ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeec-cccCCcccceecCCCceEeeccCCCceeEEEeeCCC
Confidence            44 8999999999976555 55779999999999888877763 235678999999999999999999999999766442


Q ss_pred             eeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceee
Q 001163          676 RLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWK  755 (1134)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~  755 (1134)
                      -..+.++                                                                         
T Consensus       322 g~pR~LR-------------------------------------------------------------------------  328 (910)
T KOG1539|consen  322 GVPRLLR-------------------------------------------------------------------------  328 (910)
T ss_pred             Ccchhee-------------------------------------------------------------------------
Confidence            1111110                                                                         


Q ss_pred             ecccCCccceeccccCCccccccEEEEEEe-cCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccc
Q 001163          756 LTEITEPSQCRSLRLPDNLTAMRVSRLIYT-NSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMT  834 (1134)
Q Consensus       756 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-pdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  834 (1134)
                                     ...||..+..++.|. .+|..+.+++.|++.+.+.+....++..-..       .......+...
T Consensus       329 ---------------~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~-------~~~~~~~kk~~  386 (910)
T KOG1539|consen  329 ---------------SRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ-------LHNKKRAKKVN  386 (910)
T ss_pred             ---------------eccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc-------ccccccccccc
Confidence                           012588888888887 6889999999999998887654432211100       01111111111


Q ss_pred             cCCCCCCCCCCeeEEEEcCC-----CCeEEEee-CCeEEEEEccCCeE-EEEec-----CCCCCeEEEEEcCCCCcEEEE
Q 001163          835 NDISDTNPEDAVPCFALSKN-----DSYVMSAS-GGKISLFNMMTFKT-MTTFM-----PPPPAATFLAFHPQDNNIIAI  902 (1134)
Q Consensus       835 ~~~~~~~h~~~v~~v~~s~d-----g~~la~~s-dg~i~lwd~~~~~~-~~~~~-----~~~~~v~~l~~sp~~~~~la~  902 (1134)
                      ..-.....-.+|..+++...     .+.+++.- +..++.|+...... ...+.     .....+++++.++ .|++.+.
T Consensus       387 ~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~I  465 (910)
T KOG1539|consen  387 VFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFI  465 (910)
T ss_pred             ccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEE
Confidence            00000002345666665532     22333333 56799999976543 22232     2346799999999 9999999


Q ss_pred             EeCCCcEEEEEcccceEEEec---cCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCC
Q 001163          903 GMEDSSIQIYNVRVDEVKTKL---KGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALA  979 (1134)
Q Consensus       903 g~~dg~i~iwd~~~~~~~~~l---~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  979 (1134)
                      |...|.|-+|++.+|-....+   ..|.++|++++...-++.++|++.+|-+++||+......    -.+.-+     ..
T Consensus       466 G~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~----~~l~l~-----~~  536 (910)
T KOG1539|consen  466 GYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK----KSLRLG-----SS  536 (910)
T ss_pred             eccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee----eeeccC-----CC
Confidence            999999999999999888888   589999999999888899999999999999999884411    111122     35


Q ss_pred             ceEEEEcCCCCEEEE-EeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeec
Q 001163          980 DTRVQFHLDQTHLLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRI 1058 (1134)
Q Consensus       980 v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~ 1058 (1134)
                      +.++..+.....+++ ..|-.|+++|+.+.+.++.+.  +|...|++++|||||++|++++.|++|++||+.++.++-.+
T Consensus       537 ~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~--gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~  614 (910)
T KOG1539|consen  537 ITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFW--GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL  614 (910)
T ss_pred             cceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhh--ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE
Confidence            788888888888888 478899999999999999998  99999999999999999999999999999999999998665


Q ss_pred             CCCcccCCCCCCCceeEEEEecCCCCCEEEEEecC-CcEEEEe
Q 001163         1059 NPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTD-GGVYIIE 1100 (1134)
Q Consensus      1059 ~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~D-g~v~vW~ 1100 (1134)
                      ....          -+..++|+| ++++||++..| .-|++|.
T Consensus       615 ~vd~----------~~~sls~SP-ngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  615 LVDS----------PCTSLSFSP-NGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             ecCC----------cceeeEECC-CCCEEEEEEecCceEEEEE
Confidence            5221          244569999 79999999999 5799995

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=4.8e-39  Score=342.68  Aligned_cols=556  Identities=14%  Similarity=0.151  Sum_probs=365.3

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEe--CCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGT--NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL  432 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~  432 (1134)
                      +...++|++||++|+| +|+|-  ....++||++.....+..                   +..|...|+|++|+|.++|
T Consensus        77 sRk~~t~vAfS~~Gry-vatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFsp~~ky  136 (1080)
T KOG1408|consen   77 SRKPLTCVAFSQNGRY-VATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFSPGNKY  136 (1080)
T ss_pred             cCcceeEEEEcCCCcE-EEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeecCCCcE
Confidence            6779999999999995 57875  456799999987765553                   6789999999999999999


Q ss_pred             EEEEeC--CCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeE---------
Q 001163          433 FGVAYS--KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY---------  501 (1134)
Q Consensus       433 las~s~--dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~---------  501 (1134)
                      +++.+.  |-.|.+||.+.+....    -+.-...|..++|+.||.  +++|.+. ..|++|.++.++...         
T Consensus       137 vvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs  209 (1080)
T KOG1408|consen  137 VVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRS  209 (1080)
T ss_pred             EEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeeee-eeEEEEEeeccccccCCccccchh
Confidence            998765  5578899887543322    223456799999999999  7888774 689999987665211         


Q ss_pred             ----Ee------------------------cCC-----------------CcCEEEEeccccCCccEEEEecCCCcEEEE
Q 001163          502 ----IF------------------------EGH-----------------ESPVYSICPHHKENIQFIFSTATDGKIKAW  536 (1134)
Q Consensus       502 ----~~------------------------~~h-----------------~~~v~~~~~~~~~~~~~l~s~s~dg~i~vw  536 (1134)
                          .+                        .||                 +..-+||+++    .++|++|+.+|.|++|
T Consensus       210 ~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs----~r~I~cgCa~g~vrlF  285 (1080)
T KOG1408|consen  210 YFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS----SRLIACGCAKGMVRLF  285 (1080)
T ss_pred             hhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeee----cceEEEeeccceeeec
Confidence                00                        011                 1112334432    2789999999999999


Q ss_pred             ecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEE
Q 001163          537 LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAA  616 (1134)
Q Consensus       537 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  616 (1134)
                      +..+......+.....--..++--..-..+.++                  .....|     .....+.|++....|.+.
T Consensus       286 np~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~------------------~~~a~f-----PD~IA~~Fdet~~klscV  342 (1080)
T KOG1408|consen  286 NPETLDYAGTLPRSHALGSDTANLSQPEPKNSE------------------SSPAIF-----PDAIACQFDETTDKLSCV  342 (1080)
T ss_pred             Ccchhhhccccccccccccchhhcccccccccc------------------cCcccC-----CceeEEEecCCCceEEEE
Confidence            877654433332211100000000000000000                  000001     123456677777788888


Q ss_pred             eCCCeEEEEEcCCCceeEEEe-cCCCCCCcceEEEcC-----------CCcEEEEEECCCcEEEEEccCCceeEEEeccC
Q 001163          617 GDEFMIKFWDMDNVNLLASID-ADGGLQASPCIRFNK-----------EGILLAVSTNDNGIKILANADGIRLLRTVESR  684 (1134)
Q Consensus       617 ~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~v~~sp-----------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~  684 (1134)
                      -.|..++|||++.-+.+.... .--|...|+.+.--|           -...+++++.|++||+|++..+. --..+...
T Consensus       343 YndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ct-nn~vyrRN  421 (1080)
T KOG1408|consen  343 YNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCT-NNQVYRRN  421 (1080)
T ss_pred             EcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeeccccc-ccceeecc
Confidence            888888888887644332211 001122333332222           01358899999999999987641 11111110


Q ss_pred             cccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccc
Q 001163          685 TFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQ  764 (1134)
Q Consensus       685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~  764 (1134)
                      ...                          .+..       .+..-.+....+.          |...-++|-..      
T Consensus       422 ils--------------------------~~l~-------ki~y~d~~~q~~~----------d~~~~~fdka~------  452 (1080)
T KOG1408|consen  422 ILS--------------------------ANLS-------KIPYEDSTQQIMH----------DASAGIFDKAL------  452 (1080)
T ss_pred             cch--------------------------hhhh-------cCccccCchhhhh----------hccCCcccccc------
Confidence            000                          0000       0000000000000          00011111110      


Q ss_pred             eeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCC
Q 001163          765 CRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPED  844 (1134)
Q Consensus       765 ~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~  844 (1134)
                           .........+.+++++|+|+.|++|..-|.++||++..-..                     ...  +.  +|+.
T Consensus       453 -----~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~---------------------~~~--~e--AHes  502 (1080)
T KOG1408|consen  453 -----VSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY---------------------TCF--ME--AHES  502 (1080)
T ss_pred             -----hhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh---------------------hhh--ee--cccc
Confidence                 00012456799999999999999999999999998763110                     111  22  3999


Q ss_pred             CeeEEEEcC---CCCeEEEee-CCeEEEEEcc-CCeEEEEecCCCCCeEEEEEcCCCC--cEEEEEeCCCcEEEEEcccc
Q 001163          845 AVPCFALSK---NDSYVMSAS-GGKISLFNMM-TFKTMTTFMPPPPAATFLAFHPQDN--NIIAIGMEDSSIQIYNVRVD  917 (1134)
Q Consensus       845 ~v~~v~~s~---dg~~la~~s-dg~i~lwd~~-~~~~~~~~~~~~~~v~~l~~sp~~~--~~la~g~~dg~i~iwd~~~~  917 (1134)
                      .|.|+.||.   ..++||+++ |.-|.|||.. ...++.++.+|...|+++.|.- .|  ..+++++.|+.|..--....
T Consensus       503 EilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~-~gln~~MiscGADksimFr~~qk~  581 (1080)
T KOG1408|consen  503 EILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC-NGLNRKMISCGADKSIMFRVNQKA  581 (1080)
T ss_pred             eeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEee-cCCceEEEeccCchhhheehhccc
Confidence            999999994   357899999 7889999985 4567888999999999999987 44  56778888887654332211


Q ss_pred             eEEEeccCc-----cCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEE
Q 001163          918 EVKTKLKGH-----QKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHL  992 (1134)
Q Consensus       918 ~~~~~l~~h-----~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l  992 (1134)
                      .....+..|     ...+..++..|..+++++++.|..|+||++++++..     +.+.+.....+..-.+...|.|.||
T Consensus       582 ~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~-----k~FKgs~~~eG~lIKv~lDPSgiY~  656 (1080)
T KOG1408|consen  582 SSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV-----KSFKGSRDHEGDLIKVILDPSGIYL  656 (1080)
T ss_pred             cCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccccee-----eeecccccCCCceEEEEECCCccEE
Confidence            111122222     356889999999999999999999999999998733     3333333333567789999999999


Q ss_pred             EEE-eeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCC
Q 001163          993 LAV-HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTL 1052 (1134)
Q Consensus       993 ~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~ 1052 (1134)
                      +++ +|.++.+||.-+|++++++.  +|+..|+.+.|++|.+.|++.+.||.|.||.+..-
T Consensus       657 atScsdktl~~~Df~sgEcvA~m~--GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~  715 (1080)
T KOG1408|consen  657 ATSCSDKTLCFVDFVSGECVAQMT--GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT  715 (1080)
T ss_pred             EEeecCCceEEEEeccchhhhhhc--CcchheeeeeecccchhheeecCCceEEEEECchh
Confidence            994 99999999999999999999  99999999999999999999999999999998764

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4.7e-41  Score=339.17  Aligned_cols=284  Identities=18%  Similarity=0.244  Sum_probs=264.7

Q ss_pred             eecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCC--C
Q 001163          353 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD--G  430 (1134)
Q Consensus       353 ~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--~  430 (1134)
                      ++.+.+|..+.||+|++ ++||||-+|.++||+..+...+.+                   +.||...|.++.|+|.  +
T Consensus       172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH~~~v~~~~fhP~~~~  231 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQT-------------------LRGHTSRVGAAVFHPVDSD  231 (459)
T ss_pred             ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEE-------------------EeccccceeeEEEccCCCc
Confidence            45678999999999999 679999999999999999876654                   7999999999999995  6


Q ss_pred             CEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCE
Q 001163          431 TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV  510 (1134)
Q Consensus       431 ~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v  510 (1134)
                      ..||+|+.||+|++|++.+...+.   .+.+|...|..++|+|+|+  +|+|++.|.+-++||+.++..+....||...|
T Consensus       232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v  306 (459)
T KOG0272|consen  232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV  306 (459)
T ss_pred             cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence            799999999999999999876555   7899999999999999999  89999999999999999999999999999999


Q ss_pred             EEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeE
Q 001163          511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK  590 (1134)
Q Consensus       511 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~  590 (1134)
                      .+++|++  ||.++++|+.|..-+|||++++.++..+.+|..+|.+++|+|+|..|++|+.|    ++++|||++..+.+
T Consensus       307 ~~iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~D----nt~kVWDLR~r~~l  380 (459)
T KOG0272|consen  307 FSIAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSD----NTCKVWDLRMRSEL  380 (459)
T ss_pred             ceeEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCC----CcEEEeeecccccc
Confidence            9999965  55899999999999999999999999999999999999999999999999764    46999999999999


Q ss_pred             EEecCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEE
Q 001163          591 RTYHGLGKRSVGVVQFDT-TKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKIL  669 (1134)
Q Consensus       591 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw  669 (1134)
                      .++.+|.+ .|..++|+| .|.+|++++.|++++||...+..++..+.+|  ...|.++..++++..+++++.|+++++|
T Consensus       381 y~ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGH--e~kV~s~Dis~d~~~i~t~s~DRT~KLW  457 (459)
T KOG0272|consen  381 YTIPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGH--EGKVISLDISPDSQAIATSSFDRTIKLW  457 (459)
T ss_pred             eecccccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCC--ccceEEEEeccCCceEEEeccCceeeec
Confidence            99999998 899999998 6789999999999999999999999999966  7789999999999999999999999999


Q ss_pred             E
Q 001163          670 A  670 (1134)
Q Consensus       670 ~  670 (1134)
                      .
T Consensus       458 ~  458 (459)
T KOG0272|consen  458 R  458 (459)
T ss_pred             c
Confidence            5

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.9e-39  Score=331.81  Aligned_cols=312  Identities=19%  Similarity=0.307  Sum_probs=260.2

Q ss_pred             eeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc
Q 001163          348 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS  427 (1134)
Q Consensus       348 ~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  427 (1134)
                      .....+.|.++|.+++|+|-..-++|+|+.|-+.++|++....-.....   .++..|...-.  .-...+..|++++|+
T Consensus       170 ~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q---~~lrh~~~~~~--~s~~~nkdVT~L~Wn  244 (524)
T KOG0273|consen  170 SKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQ---LVLRHCIREGG--KSVPSNKDVTSLDWN  244 (524)
T ss_pred             cceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchh---hhhhhhhhhhc--ccCCccCCcceEEec
Confidence            3355666999999999999877688999999999999987411110000   00000000000  011234689999999


Q ss_pred             CCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCC
Q 001163          428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE  507 (1134)
Q Consensus       428 pd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~  507 (1134)
                      .+|.+||+|+.||.++||+...+. +.   ++..|.++|.++.|+.+|.  +|++++.|+++.+||..+|...+.|.-|.
T Consensus       245 ~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q~f~~~s  318 (524)
T KOG0273|consen  245 NDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQQFEFHS  318 (524)
T ss_pred             CCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEEeeeecc
Confidence            999999999999999999987654 33   5888999999999999999  89999999999999999999999999898


Q ss_pred             cCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC
Q 001163          508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG  587 (1134)
Q Consensus       508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~  587 (1134)
                      .+-..+.|-. .  ..+++++.|+.|+++.+....+...+.+|.++|.++.|.|.|.+|++++.|+    ++++|.+...
T Consensus       319 ~~~lDVdW~~-~--~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~----TlkiWs~~~~  391 (524)
T KOG0273|consen  319 APALDVDWQS-N--DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDG----TLKIWSMGQS  391 (524)
T ss_pred             CCccceEEec-C--ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCC----eeEeeecCCC
Confidence            8866677642 2  5799999999999999999999999999999999999999999999998644    6999999999


Q ss_pred             eeEEEecCCCCCceEEEEEcCCC---------CEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEE
Q 001163          588 AVKRTYHGLGKRSVGVVQFDTTK---------NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLA  658 (1134)
Q Consensus       588 ~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~  658 (1134)
                      .....+..|.+ .|..+.|+|.|         ..+++++.|++|++||+..+.++..+..|  ..+|.+++|+|+|+++|
T Consensus       392 ~~~~~l~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH--~~pVysvafS~~g~ylA  468 (524)
T KOG0273|consen  392 NSVHDLQAHSK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH--QEPVYSVAFSPNGRYLA  468 (524)
T ss_pred             cchhhhhhhcc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC--CCceEEEEecCCCcEEE
Confidence            99999999998 89999999975         47899999999999999999999999855  77999999999999999


Q ss_pred             EEECCCcEEEEEccCCceeEEEe
Q 001163          659 VSTNDNGIKILANADGIRLLRTV  681 (1134)
Q Consensus       659 ~~~~dg~i~iw~~~~~~~~~~~~  681 (1134)
                      +|+.||.|.+|+..++ .+++.+
T Consensus       469 sGs~dg~V~iws~~~~-~l~~s~  490 (524)
T KOG0273|consen  469 SGSLDGCVHIWSTKTG-KLVKSY  490 (524)
T ss_pred             ecCCCCeeEeccccch-heeEee
Confidence            9999999999999887 455444

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=3.1e-37  Score=329.96  Aligned_cols=587  Identities=15%  Similarity=0.188  Sum_probs=398.6

Q ss_pred             ceeEEEee-cCCCeeEEEEcCCCC--eEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEE
Q 001163          347 KTVVMTLN-QGSAVKSMDFHPVQQ--ILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNR  423 (1134)
Q Consensus       347 ~~~~~~~~-h~~~V~~v~fsp~g~--~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  423 (1134)
                      .....++. |...|+|+.|-|+.+  -.+++|+.||.|.+|.+..........                 +.+|..  .+
T Consensus        44 ~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~-----------------~~g~~~--~~  104 (764)
T KOG1063|consen   44 ILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYT-----------------IQGHCK--EC  104 (764)
T ss_pred             ceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEe-----------------ecCcce--eE
Confidence            33444454 999999999999876  135799999999999998444333221                 345544  44


Q ss_pred             EEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeee--cCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC--ce
Q 001163          424 VMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIE--AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG--TK  499 (1134)
Q Consensus       424 l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~--~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~--~~  499 (1134)
                      ++++.......+...|+.+.+||.+..+ +.....+.  .-..--.|+++.++.+..+++.|+.+..|.++.-.++  +.
T Consensus       105 ~cv~a~~~~~~~~~ad~~v~vw~~~~~e-~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~  183 (764)
T KOG1063|consen  105 VCVVARSSVMTCKAADGTVSVWDKQQDE-VFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFAR  183 (764)
T ss_pred             EEEEeeeeEEEeeccCceEEEeecCCCc-eeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeE
Confidence            5555444444444789999999995544 11111122  1222345677778666557778888888888865433  45


Q ss_pred             eEEecCCCcCEEEEeccccCC-ccEEEEecCCCcEEEEecCCCCc---------------------e----------eee
Q 001163          500 QYIFEGHESPVYSICPHHKEN-IQFIFSTATDGKIKAWLYDNLGS---------------------R----------VDY  547 (1134)
Q Consensus       500 ~~~~~~h~~~v~~~~~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~---------------------~----------~~~  547 (1134)
                      +..+.||...|.+++|..... .-+|+++|.|..||+|.+.....                     .          ..+
T Consensus       184 v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall  263 (764)
T KOG1063|consen  184 VAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALL  263 (764)
T ss_pred             EEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhh
Confidence            678899999999999876544 46889999999999998753320                     0          013


Q ss_pred             cCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC--eeEEEe----cCCCCCceEEEEEcCCCCEEEEEeCCCe
Q 001163          548 DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG--AVKRTY----HGLGKRSVGVVQFDTTKNRFLAAGDEFM  621 (1134)
Q Consensus       548 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~  621 (1134)
                      .+|...|+++.|+|.+..|++++.|+    .+.+|...+.  --+...    .++........-|+|+++.+++-+..|.
T Consensus       264 ~GHeDWV~sv~W~p~~~~LLSASaDk----smiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg  339 (764)
T KOG1063|consen  264 MGHEDWVYSVWWHPEGLDLLSASADK----SMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG  339 (764)
T ss_pred             cCcccceEEEEEccchhhheecccCc----ceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence            46778999999999999999998765    4899987654  222222    1222335778899999999999999999


Q ss_pred             EEEEEc-CCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhccc
Q 001163          622 IKFWDM-DNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAP  700 (1134)
Q Consensus       622 i~iwd~-~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  700 (1134)
                      .++|.. +...........+|...|..++|+|.|.+|++.+.|.+-|+|..-..+.....+.                  
T Consensus       340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEia------------------  401 (764)
T KOG1063|consen  340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIA------------------  401 (764)
T ss_pred             EEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeec------------------
Confidence            999983 2333344444457789999999999999999999999999986431111111110                  


Q ss_pred             ccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEE
Q 001163          701 AIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVS  780 (1134)
Q Consensus       701 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~  780 (1134)
                                                                                            .++.|...++
T Consensus       402 ----------------------------------------------------------------------RPQiHGyDl~  411 (764)
T KOG1063|consen  402 ----------------------------------------------------------------------RPQIHGYDLT  411 (764)
T ss_pred             ----------------------------------------------------------------------ccccccccce
Confidence                                                                                  0112566666


Q ss_pred             EEEEecCCceeeeeccCCeEEeeecCCC----------------CCCcccccccCC---CCccc--CCCCCcc-------
Q 001163          781 RLIYTNSGLAILALASNAVHKLWKWPRN----------------ERNSTGKATTNQ---APQLW--QPPSGIL-------  832 (1134)
Q Consensus       781 ~l~~spdg~~l~~~~~dg~i~vw~~~~~----------------~~~~~~~~~~~~---~~~~~--d~~~~~~-------  832 (1134)
                      |++|-+....+++|.+...+|+|+.+..                ...+++..+...   .--++  +..+|..       
T Consensus       412 c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et  491 (764)
T KOG1063|consen  412 CLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAET  491 (764)
T ss_pred             eeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeec
Confidence            7777665555666666667777765432                000111100000   00000  1111110       


Q ss_pred             ------------------ccc-CCC----CCCCCCCeeEEEEcCCCCeEEEee-C-----CeEEEEEccCCeEEEEecCC
Q 001163          833 ------------------MTN-DIS----DTNPEDAVPCFALSKNDSYVMSAS-G-----GKISLFNMMTFKTMTTFMPP  883 (1134)
Q Consensus       833 ------------------~~~-~~~----~~~h~~~v~~v~~s~dg~~la~~s-d-----g~i~lwd~~~~~~~~~~~~~  883 (1134)
                                        ... ..+    -.||...|.+++.+|+|+++|+++ .     ..|++|+..+...+..+.+|
T Consensus       492 ~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~H  571 (764)
T KOG1063|consen  492 PLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGH  571 (764)
T ss_pred             ccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheeccc
Confidence                              000 000    046999999999999999999996 2     24999999999999999999


Q ss_pred             CCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccce----EEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCC
Q 001163          884 PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE----VKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGW  959 (1134)
Q Consensus       884 ~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~----~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~  959 (1134)
                      .-.|+.++||| |+++|++.+.|+++.+|+.....    .....+.|+.-|+++.|+|+++++||+|.|++|++|.....
T Consensus       572 sLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  572 SLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             ceEEEEEEECC-CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence            99999999999 99999999999999999985432    13447789999999999999999999999999999998876


Q ss_pred             ccccceeeeecCCCCCCCCCceEEEEcC----CCC-EEEEE-eeceEEEEeCCCcccc---e-------eeccCCCccCE
Q 001163          960 EKQASKFLTIPNGRTASALADTRVQFHL----DQT-HLLAV-HETQIAIYEAPKLECL---K-------QFVPREASGPI 1023 (1134)
Q Consensus       960 ~~~~~~~~~~~~~~~~~~~~v~~l~fs~----dg~-~l~~~-~d~~i~iwd~~~~~~~---~-------~~~~~~h~~~v 1023 (1134)
                      ....  ..+..  -......++.+++.|    +.. .+++| ..|.|.+|....-...   .       .-...+|.+.|
T Consensus       651 ~d~~--i~~~a--~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV  726 (764)
T KOG1063|consen  651 RDKY--ISRFA--CLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAV  726 (764)
T ss_pred             hhhh--hhhhc--hhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhh
Confidence            3111  11100  111125688888765    223 55556 6799999996511110   0       01123568899


Q ss_pred             EEEEEccC--------C--CEEEEEecCCcEEEeecC
Q 001163         1024 THATYSCD--------S--QSIYVAFEEGSVGVLTAS 1050 (1134)
Q Consensus      1024 ~~~~~s~d--------g--~~l~s~s~Dg~i~vwd~~ 1050 (1134)
                      +.++|+|-        -  ..|++|++|..++++++.
T Consensus       727 ~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  727 NRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD  763 (764)
T ss_pred             heeEeccccccccccccceeEEeeecccceeEEeecc
Confidence            99999974        2  247999999999999874

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=5.8e-40  Score=331.32  Aligned_cols=286  Identities=19%  Similarity=0.275  Sum_probs=261.0

Q ss_pred             ccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEEC
Q 001163          415 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDA  494 (1134)
Q Consensus       415 ~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~  494 (1134)
                      .|-+.+|..+.||+|++.|||||.+|.++||+..+...+.   +|.||...|.++.|+|......++||+.||++++|++
T Consensus       172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~  248 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL  248 (459)
T ss_pred             ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence            3567899999999999999999999999999999876544   7999999999999999843236999999999999999


Q ss_pred             CCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCC
Q 001163          495 VTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKE  574 (1134)
Q Consensus       495 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~  574 (1134)
                      .+..++..+.+|...|..++|+|++  ++|.|++.|.+-++||+.+.......++|...|.+++|.+||..+++|+.|. 
T Consensus       249 ~~e~~l~~l~gH~~RVs~VafHPsG--~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~-  325 (459)
T KOG0272|consen  249 SQETPLQDLEGHLARVSRVAFHPSG--KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDS-  325 (459)
T ss_pred             CCCcchhhhhcchhhheeeeecCCC--ceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccc-
Confidence            9999999999999999999997655  8999999999999999999999999999999999999999999999998754 


Q ss_pred             CCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcC-C
Q 001163          575 GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK-E  653 (1134)
Q Consensus       575 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~  653 (1134)
                         .-++||+++|+++-.+.+|.+ .|.++.|+|+|..+++||.|++++|||++..+.+..+..|  ..-|+.|.|+| .
T Consensus       326 ---~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH--~nlVS~Vk~~p~~  399 (459)
T KOG0272|consen  326 ---LGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAH--SNLVSQVKYSPQE  399 (459)
T ss_pred             ---hhheeecccCcEEEEeccccc-ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccc--cchhhheEecccC
Confidence               578999999999999999888 9999999999999999999999999999999999998866  67899999999 7


Q ss_pred             CcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCC
Q 001163          654 GILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDS  733 (1134)
Q Consensus       654 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  733 (1134)
                      |.+|++++.|++++||...+. .+++.+.                                                   
T Consensus       400 g~fL~TasyD~t~kiWs~~~~-~~~ksLa---------------------------------------------------  427 (459)
T KOG0272|consen  400 GYFLVTASYDNTVKIWSTRTW-SPLKSLA---------------------------------------------------  427 (459)
T ss_pred             CeEEEEcccCcceeeecCCCc-ccchhhc---------------------------------------------------
Confidence            899999999999999997766 4444443                                                   


Q ss_pred             ccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeee
Q 001163          734 RNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWK  804 (1134)
Q Consensus       734 ~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~  804 (1134)
                                                              ||.+.|.++.+++|+..+++++.|.++++|.
T Consensus       428 ----------------------------------------GHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  428 ----------------------------------------GHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             ----------------------------------------CCccceEEEEeccCCceEEEeccCceeeecc
Confidence                                                    3888999999999999999999999999993

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-37  Score=298.19  Aligned_cols=296  Identities=21%  Similarity=0.299  Sum_probs=251.8

Q ss_pred             EEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC
Q 001163          350 VMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP  428 (1134)
Q Consensus       350 ~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  428 (1134)
                      .-+++ |++.|+.++..+.+..++.+++.|.++.+|++.......-.              ....+.||+..|..++.++
T Consensus         8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~--------------~~r~~~GHsH~v~dv~~s~   73 (315)
T KOG0279|consen    8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGV--------------PVRRLTGHSHFVSDVVLSS   73 (315)
T ss_pred             eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCc--------------eeeeeeccceEecceEEcc
Confidence            34555 99999999999998889999999999999999765322111              1113789999999999999


Q ss_pred             CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCC--
Q 001163          429 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH--  506 (1134)
Q Consensus       429 d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h--  506 (1134)
                      ||++.++++.|+++++||+.+|+..+   .|.||...|.+++|++|++  .++||+.|++|++|++. |.+..++..+  
T Consensus        74 dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~-g~ck~t~~~~~~  147 (315)
T KOG0279|consen   74 DGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTL-GVCKYTIHEDSH  147 (315)
T ss_pred             CCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeec-ccEEEEEecCCC
Confidence            99999999999999999999997555   6899999999999999999  59999999999999965 5555555443  


Q ss_pred             CcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCC
Q 001163          507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE  586 (1134)
Q Consensus       507 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~  586 (1134)
                      .+.|.|++|+|+.+..+|++++.|++|++||+++.+....+.+|.+.++.+++||||...++++.+    +.+.+||++.
T Consensus       148 ~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkd----g~~~LwdL~~  223 (315)
T KOG0279|consen  148 REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKD----GEAMLWDLNE  223 (315)
T ss_pred             cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCC----ceEEEEEccC
Confidence            789999999999877999999999999999999999999999999999999999999999998754    4599999999


Q ss_pred             CeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCC-------CCCcceEEEcCCCcEEEE
Q 001163          587 GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGG-------LQASPCIRFNKEGILLAV  659 (1134)
Q Consensus       587 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~sp~~~~l~~  659 (1134)
                      ++.+..+....  .|.+++|+|+...|+.+ .+..|+|||++++..+..+.....       .....+++|+++|..|++
T Consensus       224 ~k~lysl~a~~--~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~  300 (315)
T KOG0279|consen  224 GKNLYSLEAFD--IVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFA  300 (315)
T ss_pred             CceeEeccCCC--eEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEe
Confidence            99988776654  89999999986555544 455699999999998887754321       223457899999999999


Q ss_pred             EECCCcEEEEEcc
Q 001163          660 STNDNGIKILANA  672 (1134)
Q Consensus       660 ~~~dg~i~iw~~~  672 (1134)
                      |..|+.|++|.+.
T Consensus       301 g~td~~irv~qv~  313 (315)
T KOG0279|consen  301 GYTDNVIRVWQVA  313 (315)
T ss_pred             eecCCcEEEEEee
Confidence            9999999999864

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.9e-36  Score=317.95  Aligned_cols=475  Identities=16%  Similarity=0.261  Sum_probs=354.8

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la  434 (1134)
                      +...|.++.|+|...++| ++-..|.|.|||.++...+..                   +.-..-+|.+..|-+..++++
T Consensus        12 rSdRVKsVd~HPtePw~l-a~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfiaRknWiv   71 (794)
T KOG0276|consen   12 RSDRVKSVDFHPTEPWIL-AALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIARKNWIV   71 (794)
T ss_pred             cCCceeeeecCCCCceEE-EeeecCeeEEEecccceeeee-------------------eeecccchhhheeeeccceEE
Confidence            788999999999999764 678899999999999877654                   223566999999999999999


Q ss_pred             EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC-ceeEEecCCCcCEEEE
Q 001163          435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHESPVYSI  513 (1134)
Q Consensus       435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~  513 (1134)
                      +|++|..|+||++.+++.++   .+..|.+-|.+++.+|...  +++|+|.|-+|++||.+.+ .+.++|.||...|.++
T Consensus        72 ~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv  146 (794)
T KOG0276|consen   72 TGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV  146 (794)
T ss_pred             EecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence            99999999999999988666   7999999999999999998  8999999999999999876 6788999999999999


Q ss_pred             eccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCC--CEEEEEecCCCCCeEEEEEeCCCCeeEE
Q 001163          514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADG--ARLFSCGTNKEGESYLVEWNESEGAVKR  591 (1134)
Q Consensus       514 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~~~~~~i~~wd~~~~~~~~  591 (1134)
                      +|+|... +.+++++.|++|++|.+....+..++.+|...|+++.+-+.|  .+|++++.    +..+++||.++..+++
T Consensus       147 ~fnPkD~-ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQtk~CV~  221 (794)
T KOG0276|consen  147 AFNPKDP-NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQTKSCVQ  221 (794)
T ss_pred             EecCCCc-cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecchHHHHH
Confidence            9998654 799999999999999999999999999999999999998755  58998875    4579999999999999


Q ss_pred             EecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEc
Q 001163          592 TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN  671 (1134)
Q Consensus       592 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~  671 (1134)
                      ++.||.. .|..++|+|.-..+++|++||+++||+..+-++..++...  ...+.|++-.+.++.+++|.+.|.+.+ .+
T Consensus       222 TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g--leRvW~I~~~k~~~~i~vG~Deg~i~v-~l  297 (794)
T KOG0276|consen  222 TLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG--LERVWCIAAHKGDGKIAVGFDEGSVTV-KL  297 (794)
T ss_pred             Hhhcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC--CceEEEEeecCCCCeEEEeccCCcEEE-Ec
Confidence            9999998 8999999999999999999999999999998888887754  568999999998889999998888765 22


Q ss_pred             cCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccccccccccc
Q 001163          672 ADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKS  751 (1134)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  751 (1134)
                      -....                                                                 .++-+..|. 
T Consensus       298 greeP-----------------------------------------------------------------~vsMd~~gK-  311 (794)
T KOG0276|consen  298 GREEP-----------------------------------------------------------------AVSMDSNGK-  311 (794)
T ss_pred             cCCCC-----------------------------------------------------------------ceeecCCcc-
Confidence            11100                                                                 000000011 


Q ss_pred             ceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCc
Q 001163          752 RIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGI  831 (1134)
Q Consensus       752 ~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~  831 (1134)
                      -+|...                   +.|..+-.       -+.+.++                           ++..|+
T Consensus       312 Iiwa~~-------------------~ei~~~~~-------ks~~~~~---------------------------ev~DgE  338 (794)
T KOG0276|consen  312 IIWAVH-------------------SEIQAVNL-------KSVGAQK---------------------------EVTDGE  338 (794)
T ss_pred             EEEEcC-------------------ceeeeeec-------eeccCcc---------------------------cccCCc
Confidence            122211                   01111100       0000000                           122222


Q ss_pred             ccccCCCCCC-CCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 001163          832 LMTNDISDTN-PEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQ  910 (1134)
Q Consensus       832 ~~~~~~~~~~-h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~  910 (1134)
                      .+.......+ -.-....++.||+|+++++++||.-.||..-..     -....+......|++ |....|+-..++.|+
T Consensus       339 rL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~-----RnK~fG~~~eFvw~~-dsne~avRes~~~vk  412 (794)
T KOG0276|consen  339 RLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALAL-----RNKAFGSGLEFVWAA-DSNEFAVRESNGNVK  412 (794)
T ss_pred             cccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeeh-----hhcccccceeEEEcC-CCCeEEEEecCCceE
Confidence            2221111100 011123578899999999999999888864221     122456677889999 767788888889999


Q ss_pred             EEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCC
Q 001163          911 IYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQT  990 (1134)
Q Consensus       911 iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~  990 (1134)
                      ++  ++.+..+.+...-.    +..--.|.+|...+ ++.+++||.++++...     ..+      -....+.|+.+|.
T Consensus       413 i~--knfke~ksi~~~~~----~e~i~gg~Llg~~s-s~~~~fydW~~~~lVr-----rI~------v~~k~v~w~d~g~  474 (794)
T KOG0276|consen  413 IF--KNFKEHKSIRPDMS----AEGIFGGPLLGVRS-SDFLCFYDWESGELVR-----RIE------VTSKHVYWSDNGE  474 (794)
T ss_pred             EE--ecceeccccccccc----eeeecCCceEEEEe-CCeEEEEEcccceEEE-----EEe------eccceeEEecCCC
Confidence            98  56666555542211    11112355555555 5569999999876322     111      1245689999999


Q ss_pred             EEEEEeeceEEEEeCC
Q 001163          991 HLLAVHETQIAIYEAP 1006 (1134)
Q Consensus       991 ~l~~~~d~~i~iwd~~ 1006 (1134)
                      +++.+.|...+++..+
T Consensus       475 lVai~~d~Sfyil~~n  490 (794)
T KOG0276|consen  475 LVAIAGDDSFYILKFN  490 (794)
T ss_pred             EEEEEecCceeEEEec
Confidence            9999888887776654

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=8.5e-36  Score=325.50  Aligned_cols=564  Identities=14%  Similarity=0.178  Sum_probs=405.6

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la  434 (1134)
                      +.+.|+|++=+.+-- ++|.|   ..|.+|.-  |+.+..                  ...+|...|.-+.  |=|.+++
T Consensus        75 lp~~I~alas~~~~v-y~A~g---~~i~~~~r--gk~i~~------------------~~~~~~a~v~~l~--~fGe~li  128 (910)
T KOG1539|consen   75 LPDKITALASDKDYV-YVASG---NKIYAYAR--GKHIRH------------------TTLLHGAKVHLLL--PFGEHLI  128 (910)
T ss_pred             CCCceEEEEecCceE-EEecC---cEEEEEEc--cceEEE------------------EeccccceEEEEe--eecceEE
Confidence            678999998766643 22222   34666653  332221                  2456777777665  4588999


Q ss_pred             EEeCCCEEEEEEccCC-ceeeeeeee-ecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEE
Q 001163          435 VAYSKHIVHLYTYHGG-DELRNHLEI-EAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS  512 (1134)
Q Consensus       435 s~s~dg~v~iwd~~~~-~~~~~~~~l-~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~  512 (1134)
                      ++..++.+.||+..++ ........+ +...+.|+++ ++|..--..++.|+.+|.+.+|++++++.+++++++...|++
T Consensus       129 a~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~  207 (910)
T KOG1539|consen  129 AVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITA  207 (910)
T ss_pred             EEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeE
Confidence            9999999999999885 221111112 2222237766 456543225899999999999999999999999999999999


Q ss_pred             EeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEE
Q 001163          513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRT  592 (1134)
Q Consensus       513 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~  592 (1134)
                      +.-+|.-  +.++.|..+|+|.+++++..+....+....+.|++++|..||+.+++.+..   .+.+.+||++..+.+..
T Consensus       208 ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~---~G~m~~wDLe~kkl~~v  282 (910)
T KOG1539|consen  208 IEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRS---NGDMAFWDLEKKKLINV  282 (910)
T ss_pred             eccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccC---CceEEEEEcCCCeeeee
Confidence            9866555  689999999999999999999999998877899999999999987766532   34599999999998888


Q ss_pred             ecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce--eEEEecCCCCCCcceEEEc-CCCcEEEEEECCCcEEEE
Q 001163          593 YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL--LASIDADGGLQASPCIRFN-KEGILLAVSTNDNGIKIL  669 (1134)
Q Consensus       593 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~s-p~~~~l~~~~~dg~i~iw  669 (1134)
                      ....+.+.+....|.|....+++++.|..+++|=.+++.-  .......||..+..|+.|. .+|..+.+++.|++++.+
T Consensus       283 ~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~f  362 (910)
T KOG1539|consen  283 TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSF  362 (910)
T ss_pred             eeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhh
Confidence            8755555888999999999999999999998886554332  2222223567788999998 588999999999999998


Q ss_pred             EccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccc-ccccccccc
Q 001163          670 ANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDV-KPKIADEAV  748 (1134)
Q Consensus       670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d  748 (1134)
                      ++.........-+.|....             ....+    .+++.    ......+..|.-+.....+. +.+.+.-.+
T Consensus       363 s~~~e~~~~~l~~~~~~~~-------------~kk~~----~~~~~----~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~  421 (910)
T KOG1539|consen  363 SVISESQSQELGQLHNKKR-------------AKKVN----VFSTE----KLKLPPIVEFAFENAREKEWDNVITAHKGK  421 (910)
T ss_pred             hhhHHHHhHhhcccccccc-------------ccccc----ccchh----hhcCCcceeeecccchhhhhcceeEEecCc
Confidence            8754311000000000000             00000    00000    01112233333222222223 333444556


Q ss_pred             cccceeeecccCCccc-eeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCC
Q 001163          749 EKSRIWKLTEITEPSQ-CRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQP  827 (1134)
Q Consensus       749 ~~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~  827 (1134)
                      ...+.|++.......- ...-.  .+.....+++++.++.|++.+.|++.|.|-+|+++.                    
T Consensus       422 ~~~~tW~~~n~~~G~~~L~~~~--~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS--------------------  479 (910)
T KOG1539|consen  422 RSAYTWNFRNKTSGRHVLDPKR--FKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS--------------------  479 (910)
T ss_pred             ceEEEEeccCcccccEEecCcc--ccccCcceEEEEEeccCceEEEeccCCeEEEEEccc--------------------
Confidence            6889999886543221 11111  112457899999999999999999999999997764                    


Q ss_pred             CCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCC
Q 001163          828 PSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED  906 (1134)
Q Consensus       828 ~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~d  906 (1134)
                        |...........|.++|+.++...-++.+++++ +|.+++||..+...+..++ -...++++.++. ...++|.+.+|
T Consensus       480 --Gi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr-~s~l~a~~~dd  555 (910)
T KOG1539|consen  480 --GIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHR-VSDLLAIALDD  555 (910)
T ss_pred             --CeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeee-hhhhhhhhcCc
Confidence              222222211224999999999999999999888 9999999999988887776 556788888888 77899999999


Q ss_pred             CcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEc
Q 001163          907 SSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFH  986 (1134)
Q Consensus       907 g~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs  986 (1134)
                      -.|+++|..+.+.++.|.+|.++|++++|||||++|++++.|++|++||+.++....     ...-.    ..++++.||
T Consensus       556 f~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID-----~~~vd----~~~~sls~S  626 (910)
T KOG1539|consen  556 FSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLID-----GLLVD----SPCTSLSFS  626 (910)
T ss_pred             eeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceee-----eEecC----CcceeeEEC
Confidence            999999999999999999999999999999999999999999999999999976332     21111    458999999


Q ss_pred             CCCCEEEEE-ee-ceEEEEeCC
Q 001163          987 LDQTHLLAV-HE-TQIAIYEAP 1006 (1134)
Q Consensus       987 ~dg~~l~~~-~d-~~i~iwd~~ 1006 (1134)
                      |.|.+||++ .| ..|++|--.
T Consensus       627 PngD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  627 PNGDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             CCCCEEEEEEecCceEEEEEch
Confidence            999999996 33 568888643

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=5.8e-37  Score=294.94  Aligned_cols=291  Identities=16%  Similarity=0.279  Sum_probs=261.7

Q ss_pred             EEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC
Q 001163          350 VMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP  428 (1134)
Q Consensus       350 ~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  428 (1134)
                      .++|+ |...|.++.|++|.++ ++++|.||.+.|||.-+..+.+.                   +.-....|..+||+|
T Consensus        48 rr~LkGH~~Ki~~~~ws~Dsr~-ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~sP  107 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDSRR-IVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAYSP  107 (343)
T ss_pred             EEEecccccceeeeEecCCcCe-EEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEECC
Confidence            46676 9999999999999995 58999999999999988876654                   334677999999999


Q ss_pred             CCCEEEEEeCCCEEEEEEccCC--c-eeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecC
Q 001163          429 DGTLFGVAYSKHIVHLYTYHGG--D-ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG  505 (1134)
Q Consensus       429 d~~~las~s~dg~v~iwd~~~~--~-~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  505 (1134)
                      .|+++|+|+-|+...||++.+.  + ..+....+.+|.+.+.|+.|.+|+.   |+|+|.|.+..+||+++|+.+..|.+
T Consensus       108 Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~G  184 (343)
T KOG0286|consen  108 SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFHG  184 (343)
T ss_pred             CCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEecC
Confidence            9999999999999999999855  1 1234446899999999999998775   99999999999999999999999999


Q ss_pred             CCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC
Q 001163          506 HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES  585 (1134)
Q Consensus       506 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~  585 (1134)
                      |.+.|.++.+.|+ +++.+++|+-|+..++||++.+.+...+.+|...|++++|.|+|.-+++|+.|+    ..++||++
T Consensus       185 H~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~----tcRlyDlR  259 (343)
T KOG0286|consen  185 HTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDA----TCRLYDLR  259 (343)
T ss_pred             CcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCc----eeEEEeec
Confidence            9999999999774 668999999999999999999999999999999999999999999999998644    69999999


Q ss_pred             CCeeEEEecCCC-CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCC
Q 001163          586 EGAVKRTYHGLG-KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN  664 (1134)
Q Consensus       586 ~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg  664 (1134)
                      ..+.+..|.... ..+|++++|+..|++|++|..|..+.+||.-.++.+..+.+|  ...|.|+..+|||..+++|+.|.
T Consensus       260 aD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH--eNRvScl~~s~DG~av~TgSWDs  337 (343)
T KOG0286|consen  260 ADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGH--ENRVSCLGVSPDGMAVATGSWDS  337 (343)
T ss_pred             CCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeecc--CCeeEEEEECCCCcEEEecchhH
Confidence            999888887543 347899999999999999999999999999999999999866  66999999999999999999999


Q ss_pred             cEEEEE
Q 001163          665 GIKILA  670 (1134)
Q Consensus       665 ~i~iw~  670 (1134)
                      +++||.
T Consensus       338 ~lriW~  343 (343)
T KOG0286|consen  338 TLRIWA  343 (343)
T ss_pred             heeecC
Confidence            999994

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=1.9e-35  Score=316.36  Aligned_cols=591  Identities=16%  Similarity=0.190  Sum_probs=411.4

Q ss_pred             EEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCC---EEEEEeC
Q 001163          362 MDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT---LFGVAYS  438 (1134)
Q Consensus       362 v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~---~las~s~  438 (1134)
                      ..|.|.+  ++|.| ....|.+||........                   .+.||..+|+|+.|-|+.+   ++++|+.
T Consensus        20 ~sw~~~~--~vafG-a~~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~s   77 (764)
T KOG1063|consen   20 SSWGPGG--LVAFG-AGPAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGDS   77 (764)
T ss_pred             ccccccc--eEEec-CCceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEccC
Confidence            3455555  34444 45679999987653222                   3789999999999999888   9999999


Q ss_pred             CCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEE-eCCCeEEEEECCCCc--eeEEecCCCcCEE--EE
Q 001163          439 KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTC-GEDRVIKVWDAVTGT--KQYIFEGHESPVY--SI  513 (1134)
Q Consensus       439 dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~-s~d~~i~iwd~~~~~--~~~~~~~h~~~v~--~~  513 (1134)
                      |+.|++|.++... +.+...+.+|...+.|+  ...-.   +.++ ..|+++.+||.+..+  ++..++-....+.  |+
T Consensus        78 D~~v~lW~l~~~~-~~~i~~~~g~~~~~~cv--~a~~~---~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL  151 (764)
T KOG1063|consen   78 DGRVILWKLRDEY-LIKIYTIQGHCKECVCV--VARSS---VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCL  151 (764)
T ss_pred             CCcEEEEEEeehh-eEEEEeecCcceeEEEE--Eeeee---EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHH
Confidence            9999999999433 44555788876655554  43332   3333 789999999985555  3333332222333  34


Q ss_pred             eccccCCccEEEEecCCCcEEEEecCCC--CceeeecCCCCCeeEEEECcCCC---EEEEEecCCCCCeEEEEEeCCCCe
Q 001163          514 CPHHKENIQFIFSTATDGKIKAWLYDNL--GSRVDYDAPGHSSTMMAYSADGA---RLFSCGTNKEGESYLVEWNESEGA  588 (1134)
Q Consensus       514 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~~~~~~~~i~~wd~~~~~  588 (1134)
                      ++.++++.-+++.|+.+..|.++.-...  .....+.+|...|.+++|...+.   +|++++.    +..|++|.+.-+.
T Consensus       152 ~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQ----D~yIRiW~i~~~~  227 (764)
T KOG1063|consen  152 AALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQ----DRYIRIWRIVLGD  227 (764)
T ss_pred             hhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCC----ceEEEEEEEEecC
Confidence            4444344345667777888888865433  33456788888999999987554   4555543    5679999764222


Q ss_pred             ---------------------eE----------EEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC--ceeEE
Q 001163          589 ---------------------VK----------RTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV--NLLAS  635 (1134)
Q Consensus       589 ---------------------~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~  635 (1134)
                                           ..          ..+.||.+ .|.++.|+|.+..|++++.|.++.+|...+.  -.+..
T Consensus       228 ~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~  306 (764)
T KOG1063|consen  228 DEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDV  306 (764)
T ss_pred             CccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEE
Confidence                                 11          11237776 9999999999999999999999999987654  33332


Q ss_pred             Ee--cC-CCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhccccccccccccccc
Q 001163          636 ID--AD-GGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANV  712 (1134)
Q Consensus       636 ~~--~~-~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  712 (1134)
                      ..  .- +.........|+|++..+++-+..|..++|...+.  .                                   
T Consensus       307 vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~--~-----------------------------------  349 (764)
T KOG1063|consen  307 VRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDK--T-----------------------------------  349 (764)
T ss_pred             EEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCc--c-----------------------------------
Confidence            22  11 22334678999999999999999999999983222  0                                   


Q ss_pred             ccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceee
Q 001163          713 GTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAIL  792 (1134)
Q Consensus       713 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~  792 (1134)
                                                              .|...            ....||...|+.++|.|.|.+|+
T Consensus       350 ----------------------------------------~w~~~------------~~iSGH~~~V~dv~W~psGeflL  377 (764)
T KOG1063|consen  350 ----------------------------------------FWTQE------------PVISGHVDGVKDVDWDPSGEFLL  377 (764)
T ss_pred             ----------------------------------------ceeec------------cccccccccceeeeecCCCCEEE
Confidence                                                    11111            01125889999999999999999


Q ss_pred             eeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEc
Q 001163          793 ALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNM  871 (1134)
Q Consensus       793 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~  871 (1134)
                      +.+.|.+-|+|---.++.             -|     ..+.+   .+-|...++|++|-+....+++|. ...+|+|+.
T Consensus       378 svs~DQTTRlFa~wg~q~-------------~w-----HEiaR---PQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~a  436 (764)
T KOG1063|consen  378 SVSLDQTTRLFARWGRQQ-------------EW-----HEIAR---PQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEA  436 (764)
T ss_pred             Eeccccceeeeccccccc-------------ce-----eeecc---cccccccceeeehccCCceeeecccceeeeeecC
Confidence            999999999873221100             01     11111   112888999999988555666666 466888875


Q ss_pred             cC-------------------------------------------CeE--------------------------------
Q 001163          872 MT-------------------------------------------FKT--------------------------------  876 (1134)
Q Consensus       872 ~~-------------------------------------------~~~--------------------------------  876 (1134)
                      ..                                           |..                                
T Consensus       437 Pk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwP  516 (764)
T KOG1063|consen  437 PKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWP  516 (764)
T ss_pred             cHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccch
Confidence            10                                           000                                


Q ss_pred             -EEEecCCCCCeEEEEEcCCCCcEEEEEeCCC-----cEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCc
Q 001163          877 -MTTFMPPPPAATFLAFHPQDNNIIAIGMEDS-----SIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQ  950 (1134)
Q Consensus       877 -~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg-----~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~  950 (1134)
                       +..+.||..+|.+++.+| +++++|+++...     .|++|+..+...+..+.+|+-.|+.++|||||++|++.|.|.+
T Consensus       517 Ev~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt  595 (764)
T KOG1063|consen  517 EVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRT  595 (764)
T ss_pred             hhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCce
Confidence             001124778899999999 999999997654     6999999998888899999999999999999999999999999


Q ss_pred             EEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCc--ccceeeccCCCccCEEEEE
Q 001163          951 LCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKL--ECLKQFVPREASGPITHAT 1027 (1134)
Q Consensus       951 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~--~~~~~~~~~~h~~~v~~~~ 1027 (1134)
                      +.+|+..........+.. ...|.   --|-++.|+||++++++ +.|.+|.||.....  +.+..+.+..++..|+.++
T Consensus       596 ~sl~~~~~~~~~e~~fa~-~k~Ht---RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~  671 (764)
T KOG1063|consen  596 VSLYEVQEDIKDEFRFAC-LKAHT---RIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVA  671 (764)
T ss_pred             EEeeeeecccchhhhhcc-ccccc---eEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEE
Confidence            999998765544333222 33333   24678889999999999 69999999999988  7777766667899999999


Q ss_pred             Ecc-----CCCEEEEEecCCcEEEeecCCCcceeecC---CCccc--CCCCCCCceeEEEEecCCC---------CCEEE
Q 001163         1028 YSC-----DSQSIYVAFEEGSVGVLTASTLRLRCRIN---PTAYL--PTNPSLRVYPLVIAGNPTD---------PNQFA 1088 (1134)
Q Consensus      1028 ~s~-----dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~---~~~~~--~~~h~~~v~~~~~~~~p~~---------~~~l~ 1088 (1134)
                      +.|     .+..++.|-+.|.|.+|....-.......   ....+  ..+|.+.|.-+  .|.|..         ...|+
T Consensus       672 ~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl--~w~p~~~~~~~~~~~~l~la  749 (764)
T KOG1063|consen  672 YLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRL--LWRPTCSDDWVEDKEWLNLA  749 (764)
T ss_pred             eeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhhee--EeccccccccccccceeEEe
Confidence            976     23367888899999999966221111111   00001  11366777766  677642         22579


Q ss_pred             EEecCCcEEEEeCC
Q 001163         1089 LGLTDGGVYIIEPL 1102 (1134)
Q Consensus      1089 s~~~Dg~v~vW~~~ 1102 (1134)
                      +|++|.+++++++.
T Consensus       750 ~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  750 VGGDDESVRIFNVD  763 (764)
T ss_pred             eecccceeEEeecc
Confidence            99999999999875

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3.4e-37  Score=336.98  Aligned_cols=276  Identities=17%  Similarity=0.295  Sum_probs=239.9

Q ss_pred             CCCCCceeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceee---eceee---------eeccccCcc
Q 001163          342 TDDLPKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAV---KSFKV---------WELGACSMP  408 (1134)
Q Consensus       342 ~d~~~~~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~---~~~~~---------~~~~~~~~~  408 (1134)
                      .+.++..+..++. ....++|+.||+|++ ++|.|-.|..|++|.+...+....   ..+.-         -++......
T Consensus       363 ~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~  441 (707)
T KOG0263|consen  363 RNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS  441 (707)
T ss_pred             CCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence            5667788888877 568999999999999 789999999999999986432110   00000         011122222


Q ss_pred             ccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCe
Q 001163          409 LQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV  488 (1134)
Q Consensus       409 ~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~  488 (1134)
                      .....+.||+++|..+.|+|+.++|+++|.|++||+|.+.+..++.   ...||..+|+.+.|+|.|-  +++|+|.|++
T Consensus       442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~t  516 (707)
T KOG0263|consen  442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQT  516 (707)
T ss_pred             ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCce
Confidence            3333588999999999999999999999999999999999987665   6789999999999999998  8999999999


Q ss_pred             EEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEE
Q 001163          489 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFS  568 (1134)
Q Consensus       489 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  568 (1134)
                      .++|......+++.|.+|-+.|.|+.|+|+.  .++++||.|.+||+||+.++..+..+.+|..+|.+++|||+|++|++
T Consensus       517 ArLWs~d~~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS  594 (707)
T KOG0263|consen  517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS  594 (707)
T ss_pred             eeeeecccCCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee
Confidence            9999999999999999999999999998766  89999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 001163          569 CGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV  630 (1134)
Q Consensus       569 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  630 (1134)
                      ++.+    +.|.+||+.+++.+..+.+|.+ .+.++.|+.+|..|++|+.|.+|++||+..-
T Consensus       595 g~ed----~~I~iWDl~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  595 GDED----GLIKIWDLANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             cccC----CcEEEEEcCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            9764    4699999999999999999955 9999999999999999999999999998653

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.5e-35  Score=310.82  Aligned_cols=459  Identities=15%  Similarity=0.218  Sum_probs=351.3

Q ss_pred             cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163          414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD  493 (1134)
Q Consensus       414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd  493 (1134)
                      +..|+..|.++.|+|...+++++-.+|.|.|||.++...++   .+.-..-+|.+..|-+.-+  ++++|+.|..|+|++
T Consensus         9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn   83 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN   83 (794)
T ss_pred             hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence            45589999999999999999999999999999999988777   6777888999999998777  899999999999999


Q ss_pred             CCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCC-CceeeecCCCCCeeEEEECc-CCCEEEEEec
Q 001163          494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL-GSRVDYDAPGHSSTMMAYSA-DGARLFSCGT  571 (1134)
Q Consensus       494 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~  571 (1134)
                      ..+++.++.|.+|...|.+++.+|..  .+++++|.|-+|++||.+.. .+...+++|.+-|.+++|.| |.+.+++++.
T Consensus        84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL  161 (794)
T KOG0276|consen   84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL  161 (794)
T ss_pred             cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence            99999999999999999999999877  79999999999999999864 46678999999999999999 5678999987


Q ss_pred             CCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCC--CEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEE
Q 001163          572 NKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK--NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIR  649 (1134)
Q Consensus       572 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  649 (1134)
                      |+    +|++|.+.+..+..++.+|.. .|+++++-+.|  .+|++|++|.+|+|||.++..+++++.+|  ...|+.+.
T Consensus       162 Dr----TVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGH--t~Nvs~v~  234 (794)
T KOG0276|consen  162 DR----TVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGH--TNNVSFVF  234 (794)
T ss_pred             cc----cEEEEEcCCCCCceeeecccc-CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcc--cccceEEE
Confidence            65    599999999999999999998 89999997654  79999999999999999999999999966  66899999


Q ss_pred             EcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCC
Q 001163          650 FNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGM  729 (1134)
Q Consensus       650 ~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  729 (1134)
                      |+|.-..+++|+.||++|||+..+- ++..++.-                                              
T Consensus       235 fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn~----------------------------------------------  267 (794)
T KOG0276|consen  235 FHPELPIIISGSEDGTVRIWNSKTY-KLEKTLNY----------------------------------------------  267 (794)
T ss_pred             ecCCCcEEEEecCCccEEEecCcce-ehhhhhhc----------------------------------------------
Confidence            9999999999999999999997654 11111100                                              


Q ss_pred             CCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCC
Q 001163          730 SNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNE  809 (1134)
Q Consensus       730 ~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~  809 (1134)
                                                                   .-.++.+++..+.+..+++|..+|.+.+=      
T Consensus       268 ---------------------------------------------gleRvW~I~~~k~~~~i~vG~Deg~i~v~------  296 (794)
T KOG0276|consen  268 ---------------------------------------------GLERVWCIAAHKGDGKIAVGFDEGSVTVK------  296 (794)
T ss_pred             ---------------------------------------------CCceEEEEeecCCCCeEEEeccCCcEEEE------
Confidence                                                         23456677777777778888888877651      


Q ss_pred             CCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeC--CeEEEE------EccCCeEEEE--
Q 001163          810 RNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASG--GKISLF------NMMTFKTMTT--  879 (1134)
Q Consensus       810 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sd--g~i~lw------d~~~~~~~~~--  879 (1134)
                                                      -......+.+++.|+.+-+...  -.+.+-      ++..|+.+..  
T Consensus       297 --------------------------------lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~Lsv  344 (794)
T KOG0276|consen  297 --------------------------------LGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSV  344 (794)
T ss_pred             --------------------------------ccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchh
Confidence                                            1122224555566654433321  111111      2233333221  


Q ss_pred             --ecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECC
Q 001163          880 --FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTD  957 (1134)
Q Consensus       880 --~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~  957 (1134)
                        +-.-.-....++-+| +|+++++++ ||.-.||..-..+     ..+-+.-....|++|....+.--.++.|+++  +
T Consensus       345 KeLgs~eiyPq~L~hsP-NGrfV~Vcg-dGEyiIyTala~R-----nK~fG~~~eFvw~~dsne~avRes~~~vki~--k  415 (794)
T KOG0276|consen  345 KELGSVEIYPQTLAHSP-NGRFVVVCG-DGEYIIYTALALR-----NKAFGSGLEFVWAADSNEFAVRESNGNVKIF--K  415 (794)
T ss_pred             hhccccccchHHhccCC-CCcEEEEec-CccEEEEEeeehh-----hcccccceeEEEcCCCCeEEEEecCCceEEE--e
Confidence              111111234578888 888776654 8888888743211     1244556788999998888888778889988  3


Q ss_pred             CCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEE
Q 001163          958 GWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYV 1037 (1134)
Q Consensus       958 ~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s 1037 (1134)
                      ..+..+  .+..          -..+.+--.|.+|.+-.++.+++||.++++.++.+..     ....+.|+.+|.+++.
T Consensus       416 nfke~k--si~~----------~~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v-----~~k~v~w~d~g~lVai  478 (794)
T KOG0276|consen  416 NFKEHK--SIRP----------DMSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEV-----TSKHVYWSDNGELVAI  478 (794)
T ss_pred             cceecc--cccc----------ccceeeecCCceEEEEeCCeEEEEEcccceEEEEEee-----ccceeEEecCCCEEEE
Confidence            322111  1110          1113333456667777889999999999999998863     4467899999999988


Q ss_pred             EecCC
Q 001163         1038 AFEEG 1042 (1134)
Q Consensus      1038 ~s~Dg 1042 (1134)
                      +++|.
T Consensus       479 ~~d~S  483 (794)
T KOG0276|consen  479 AGDDS  483 (794)
T ss_pred             EecCc
Confidence            88764

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.7e-35  Score=320.10  Aligned_cols=500  Identities=15%  Similarity=0.231  Sum_probs=340.2

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la  434 (1134)
                      ....|..++|+|...++ .++-..|.|.+||..-+.++..                   +.+|.++|..++|+|++.+++
T Consensus         8 kSsRvKglsFHP~rPwI-LtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFV   67 (1202)
T KOG0292|consen    8 KSSRVKGLSFHPKRPWI-LTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFV   67 (1202)
T ss_pred             ccccccceecCCCCCEE-EEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEE
Confidence            45688999999999965 5788999999999999988774                   789999999999999999999


Q ss_pred             EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEe
Q 001163          435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSIC  514 (1134)
Q Consensus       435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~  514 (1134)
                      +|++|..|+||++++.+++.   ++.||-+.|..+.|++.-.  +++|+|.|.+|+||++.+++++..+.||...|.|..
T Consensus        68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq  142 (1202)
T KOG0292|consen   68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ  142 (1202)
T ss_pred             ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence            99999999999999987665   7999999999999999888  899999999999999999999999999999999999


Q ss_pred             ccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEec
Q 001163          515 PHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH  594 (1134)
Q Consensus       515 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~  594 (1134)
                      |+|..  +.++++|.|.+||+||+...+....-.+      ++.=...+..+   .        .-++-....-....+.
T Consensus       143 FhptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg------~~e~~~~~~~~---~--------~dLfg~~DaVVK~VLE  203 (1202)
T KOG0292|consen  143 FHPTE--DLIVSASLDQTVRVWDISGLRKKNKAPG------SLEDQMRGQQG---N--------SDLFGQTDAVVKHVLE  203 (1202)
T ss_pred             cCCcc--ceEEEecccceEEEEeecchhccCCCCC------Cchhhhhcccc---c--------hhhcCCcCeeeeeeec
Confidence            99877  6899999999999999975433322111      01000111111   0        0011111123345678


Q ss_pred             CCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163          595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       595 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      ||.. .|+.++|+|.-..+++|++|+.|++|.+..-+.-..-...+|...|.++-|+|...++++.+.|++|++||+...
T Consensus       204 GHDR-GVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR  282 (1202)
T KOG0292|consen  204 GHDR-GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR  282 (1202)
T ss_pred             cccc-ccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc
Confidence            8887 899999999999999999999999999987665444444566889999999999999999999999999999776


Q ss_pred             ceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccccccccccccee
Q 001163          675 IRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIW  754 (1134)
Q Consensus       675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw  754 (1134)
                       ..+++++.                                                                       
T Consensus       283 -t~v~tfrr-----------------------------------------------------------------------  290 (1202)
T KOG0292|consen  283 -TSVQTFRR-----------------------------------------------------------------------  290 (1202)
T ss_pred             -cceeeeec-----------------------------------------------------------------------
Confidence             33433321                                                                       


Q ss_pred             eecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccc
Q 001163          755 KLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMT  834 (1134)
Q Consensus       755 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  834 (1134)
                                          ...+...++.+|..+.+++|. |+-+.||.++.                           
T Consensus       291 --------------------endRFW~laahP~lNLfAAgH-DsGm~VFkleR---------------------------  322 (1202)
T KOG0292|consen  291 --------------------ENDRFWILAAHPELNLFAAGH-DSGMIVFKLER---------------------------  322 (1202)
T ss_pred             --------------------cCCeEEEEEecCCcceeeeec-CCceEEEEEcc---------------------------
Confidence                                234566778889988665555 55556665542                           


Q ss_pred             cCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeE--EEEecCC---CCCeEEEEEcCCCCcEEEEEeCC-Cc
Q 001163          835 NDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKT--MTTFMPP---PPAATFLAFHPQDNNIIAIGMED-SS  908 (1134)
Q Consensus       835 ~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~--~~~~~~~---~~~v~~l~~sp~~~~~la~g~~d-g~  908 (1134)
                              +.++.  +++  +..|.-.-|..|+-+|+.+.+.  +..++..   ..+..++.|+|..+..+++...| |.
T Consensus       323 --------Erpa~--~v~--~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~  390 (1202)
T KOG0292|consen  323 --------ERPAY--AVN--GNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGE  390 (1202)
T ss_pred             --------cCceE--EEc--CCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCe
Confidence                    23333  332  3334444488899999987543  3334433   35788999999555555554433 34


Q ss_pred             EEEEEcccceEEE-e--ccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEE
Q 001163          909 IQIYNVRVDEVKT-K--LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQF  985 (1134)
Q Consensus       909 i~iwd~~~~~~~~-~--l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~f  985 (1134)
                      ..++.+....... .  -........++-.+ .+++.+---.+..+.+=++.....   +.++.+.       .+..+-+
T Consensus       391 y~L~~ipk~~~~~~~~~~~~k~tG~~a~fva-rNrfavl~k~~~~v~ik~l~N~vt---kkl~~~~-------~~~~IF~  459 (1202)
T KOG0292|consen  391 YELVQIPKDSDGVSDGKDVKKGTGEGALFVA-RNRFAVLDKSNEQVVIKNLKNKVT---KKLLLPE-------STDDIFY  459 (1202)
T ss_pred             EEEEEecCcccccCCchhhhcCCCCceEEEE-ecceEEEEecCcceEEecccchhh---hcccCcc-------cccceee
Confidence            4444443221000 0  00011112222222 222333333344555555554221   1122111       1344555


Q ss_pred             cCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEee
Q 001163          986 HLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLT 1048 (1134)
Q Consensus       986 s~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd 1048 (1134)
                      .-+|.+|+. +...|.+||+...+.+..+.    ...|.-++||+|..+++--+. .+|.|.+
T Consensus       460 ag~g~lll~-~~~~v~lfdvQq~~~~~si~----~s~vkyvvws~dm~~vAll~K-h~i~i~~  516 (1202)
T KOG0292|consen  460 AGTGNLLLR-SPDSVTLFDVQQKKKVGSIK----VSKVKYVVWSNDMSRVALLSK-HTITIAD  516 (1202)
T ss_pred             ccCccEEEE-cCCeEEEEEeecceEEEEEe----cCceeEEEEcCccchhhhccc-ceEEEEe
Confidence            555554443 45567777777777666665    456777777777776554442 3444444

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.8e-36  Score=290.21  Aligned_cols=287  Identities=17%  Similarity=0.227  Sum_probs=258.8

Q ss_pred             ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEE
Q 001163          413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW  492 (1134)
Q Consensus       413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  492 (1134)
                      +++||.+.|.++.|++|+++|+++|.||.+.|||.-+.....   -+.-....|..++|+|.|+  +++.|+-|+...||
T Consensus        50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy  124 (343)
T KOG0286|consen   50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIY  124 (343)
T ss_pred             EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEE
Confidence            478999999999999999999999999999999998866444   4556778999999999999  89999999999999


Q ss_pred             ECCCC------ceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECc-CCCE
Q 001163          493 DAVTG------TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSA-DGAR  565 (1134)
Q Consensus       493 d~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~  565 (1134)
                      ++.+.      +..+.+.+|.+.+.++.|..  | ..|+++|.|.+..+||++++.....+.+|.+.|.++.++| +++.
T Consensus       125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt  201 (343)
T KOG0286|consen  125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--D-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT  201 (343)
T ss_pred             ecccccccccceeeeeecCccceeEEEEEcC--C-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence            99855      34567899999999999854  3 6899999999999999999999999999999999999999 9999


Q ss_pred             EEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCc
Q 001163          566 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQAS  645 (1134)
Q Consensus       566 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v  645 (1134)
                      +++++-|+    ..++||++.+.++++|.+|.. .|++++|.|+|.-+++|++|++.++||++..+.+..+........|
T Consensus       202 FvSg~cD~----~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gi  276 (343)
T KOG0286|consen  202 FVSGGCDK----SAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGI  276 (343)
T ss_pred             EEeccccc----ceeeeeccCcceeEeeccccc-ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCc
Confidence            99998654    589999999999999999998 8999999999999999999999999999999999999887777889


Q ss_pred             ceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCccccc
Q 001163          646 PCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAA  725 (1134)
Q Consensus       646 ~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  725 (1134)
                      ++++|+..|++|++|..|.++.+||.-.+ +....+.                                           
T Consensus       277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~-e~vg~L~-------------------------------------------  312 (343)
T KOG0286|consen  277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKG-ERVGVLA-------------------------------------------  312 (343)
T ss_pred             eeEEEcccccEEEeeecCCceeEeecccc-ceEEEee-------------------------------------------
Confidence            99999999999999999999999997655 2222221                                           


Q ss_pred             ccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeee
Q 001163          726 MVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWK  804 (1134)
Q Consensus       726 ~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~  804 (1134)
                                                                      +|.++|+++..+|||..+++++.|..++||.
T Consensus       313 ------------------------------------------------GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  313 ------------------------------------------------GHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             ------------------------------------------------ccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence                                                            3899999999999999999999999999993

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-35  Score=284.34  Aligned_cols=296  Identities=17%  Similarity=0.200  Sum_probs=250.0

Q ss_pred             ccccccEEEEEEecC-CceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEE
Q 001163          773 NLTAMRVSRLIYTNS-GLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFAL  851 (1134)
Q Consensus       773 ~~~~~~i~~l~~spd-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~  851 (1134)
                      .+|.+.|+.++..+. ...+++++.|..+.+|++...                 |.+.|.++.. +.|  |...|..++.
T Consensus        12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~-~~G--HsH~v~dv~~   71 (315)
T KOG0279|consen   12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR-LTG--HSHFVSDVVL   71 (315)
T ss_pred             cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee-eec--cceEecceEE
Confidence            459999999999887 556778888999999998753                 4455555543 555  9999999999


Q ss_pred             cCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccC-ccCc
Q 001163          852 SKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKG-HQKR  929 (1134)
Q Consensus       852 s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~-h~~~  929 (1134)
                      ++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |++.+++|+.|.+|.+|+...+........ |.+-
T Consensus        72 s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~W  150 (315)
T KOG0279|consen   72 SSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREW  150 (315)
T ss_pred             ccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcCc
Confidence            99999999999 99999999999999999999999999999999 889999999999999999886544433333 3788


Q ss_pred             eEEEEEeeC--CCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCC
Q 001163          930 ITGLAFSNT--LNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAP 1006 (1134)
Q Consensus       930 V~~l~~s~d--~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~ 1006 (1134)
                      |.|+.|+|+  ..+++++|.|++|++||+.+-+     ....+-||.   ..++.+++||||...++ +.||.+.+||++
T Consensus       151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-----l~~~~~gh~---~~v~t~~vSpDGslcasGgkdg~~~LwdL~  222 (315)
T KOG0279|consen  151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-----LRTTFIGHS---GYVNTVTVSPDGSLCASGGKDGEAMLWDLN  222 (315)
T ss_pred             EEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-----hhhcccccc---ccEEEEEECCCCCEEecCCCCceEEEEEcc
Confidence            999999998  7899999999999999999844     444555665   57999999999999999 589999999999


Q ss_pred             CcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCE
Q 001163         1007 KLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQ 1086 (1134)
Q Consensus      1007 ~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~ 1086 (1134)
                      .++.+..+   +|...|.+++|+|+.-.|+.+. +..|+|||++++..+..+.+...-++.-.+.+.++.++|++ ||..
T Consensus       223 ~~k~lysl---~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~-dG~t  297 (315)
T KOG0279|consen  223 EGKNLYSL---EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSA-DGQT  297 (315)
T ss_pred             CCceeEec---cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcC-CCcE
Confidence            99997666   5789999999999977776554 55699999999998877765443333345567888999999 7999


Q ss_pred             EEEEecCCcEEEEeCC
Q 001163         1087 FALGLTDGGVYIIEPL 1102 (1134)
Q Consensus      1087 l~s~~~Dg~v~vW~~~ 1102 (1134)
                      |+.|..|+.|++|.+.
T Consensus       298 Lf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  298 LFAGYTDNVIRVWQVA  313 (315)
T ss_pred             EEeeecCCcEEEEEee
Confidence            9999999999999875

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=2.2e-33  Score=289.14  Aligned_cols=539  Identities=17%  Similarity=0.193  Sum_probs=386.3

Q ss_pred             EEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCC
Q 001163          361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKH  440 (1134)
Q Consensus       361 ~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg  440 (1134)
                      .+-+-|.|..+..++   ..+.+++++...+.                    .+.||+..|.|++.+||.-.+|+|-..|
T Consensus        70 Nly~lptgE~vyfvA---~V~Vl~n~ee~~Qr--------------------~y~GH~ddikc~~vHPdri~vatGQ~ag  126 (626)
T KOG2106|consen   70 NLYLLPTGELVYFVA---AVGVLYNWEERSQR--------------------HYLGHNDDIKCMAVHPDRIRVATGQGAG  126 (626)
T ss_pred             eeEEccCccEEEEec---cEEEEEeehhhhcc--------------------cccCCCCceEEEeecCCceeeccCcccc
Confidence            456677777444333   34677777553322                    2689999999999999999999875544


Q ss_pred             --------EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCc--eEEEEEeCCCeEEEEECCCCceeEEecCCCcCE
Q 001163          441 --------IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQ--LSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV  510 (1134)
Q Consensus       441 --------~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v  510 (1134)
                              .|+|||..+-..+.   .+..-...|+|++|++-+..  +..+--+.+..+.+||...+......+.....|
T Consensus       127 ~~g~~~~phvriWdsv~L~TL~---V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v  203 (626)
T KOG2106|consen  127 TSGRPLQPHVRIWDSVTLSTLH---VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVV  203 (626)
T ss_pred             cCCCcCCCeeeecccccceeee---eeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceE
Confidence                    49999987744343   56667778999999985332  222334556688999999998888787777888


Q ss_pred             EEEeccccCCccEEEEecCCCcEEEEecCCCCceee---ecC-CCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCC
Q 001163          511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD---YDA-PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE  586 (1134)
Q Consensus       511 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~---~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~  586 (1134)
                      ....|+|... +++++++. +.+.+|+++.+.....   ++. ....|.+++|.++|..+- +    |..+.|.+|+..+
T Consensus       204 ~~a~FHPtd~-nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviT-g----DS~G~i~Iw~~~~  276 (626)
T KOG2106|consen  204 FLATFHPTDP-NLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVIT-G----DSGGNILIWSKGT  276 (626)
T ss_pred             EEEEeccCCC-cEEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEe-e----cCCceEEEEeCCC
Confidence            8899998765 56666664 8999999886554332   222 224799999999998654 3    3456799999998


Q ss_pred             CeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcE
Q 001163          587 GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGI  666 (1134)
Q Consensus       587 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i  666 (1134)
                      .+..+....|.. .|.+++...+|. |++|+.|+.|..|| ..-+.++.++.+...+.+..++=...+  |++|...+.|
T Consensus       277 ~~~~k~~~aH~g-gv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~i  351 (626)
T KOG2106|consen  277 NRISKQVHAHDG-GVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNFI  351 (626)
T ss_pred             ceEEeEeeecCC-ceEEEEEecCcc-EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeeccceE
Confidence            888888776665 899999999885 45599999999999 555555555555556667666544322  6677766666


Q ss_pred             EEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccc
Q 001163          667 KILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADE  746 (1134)
Q Consensus       667 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  746 (1134)
                      ..=.++++..+..                                                                   
T Consensus       352 L~Gt~~~~f~~~v-------------------------------------------------------------------  364 (626)
T KOG2106|consen  352 LQGTLENGFTLTV-------------------------------------------------------------------  364 (626)
T ss_pred             EEeeecCCceEEE-------------------------------------------------------------------
Confidence            5444443311110                                                                   


Q ss_pred             cccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccC
Q 001163          747 AVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQ  826 (1134)
Q Consensus       747 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d  826 (1134)
                                                .+|......++.+|+...+++++.|+.+++|+-..               .+|.
T Consensus       365 --------------------------~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k---------------~~wt  403 (626)
T KOG2106|consen  365 --------------------------QGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHK---------------LEWT  403 (626)
T ss_pred             --------------------------EecccceeeEEcCCChhheeeccCcceEEEccCCc---------------eeEE
Confidence                                      13556677888999999999999999999997111               1222


Q ss_pred             CCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeC
Q 001163          827 PPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGME  905 (1134)
Q Consensus       827 ~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~  905 (1134)
                      ..             -..++.++.|+|.| .+|.|. .|...+.|.++...+..-. ...+++++.|+| +|.+||+|+.
T Consensus       404 ~~-------------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp-~G~~lAvgs~  467 (626)
T KOG2106|consen  404 KI-------------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSP-DGAFLAVGSH  467 (626)
T ss_pred             EE-------------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcC-CCCEEEEecC
Confidence            11             35778899999999 888888 8999999999966655544 488999999999 9999999999


Q ss_pred             CCcEEEEEcccc-eEEEec-cCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEE
Q 001163          906 DSSIQIYNVRVD-EVKTKL-KGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRV  983 (1134)
Q Consensus       906 dg~i~iwd~~~~-~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l  983 (1134)
                      |+.|+||.+..+ ...... +.|..+|+.+.||+|+++|.+-+.|-.|..|.... -++.              ..+..+
T Consensus       468 d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~-~~~~--------------ts~kDv  532 (626)
T KOG2106|consen  468 DNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSE-CKQI--------------TSVKDV  532 (626)
T ss_pred             CCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcccc-Cccc--------------ceecce
Confidence            999999998754 333332 22448999999999999999999999999994322 1110              112333


Q ss_pred             EEcCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcc
Q 001163          984 QFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAY 1063 (1134)
Q Consensus       984 ~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~ 1063 (1134)
                      .|....-.|  |       +         ......|...|..++-|.++++|++|.+.|+|++|...-....    ...+
T Consensus       533 kW~t~~c~l--G-------F---------~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~r----A~~h  590 (626)
T KOG2106|consen  533 KWATYTCTL--G-------F---------EVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPR----APSH  590 (626)
T ss_pred             eeeeeEEEE--E-------E---------EEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCc----ccce
Confidence            332211100  0       0         0011356778888899999999999999999999998765543    3334


Q ss_pred             cCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeC
Q 001163         1064 LPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEP 1101 (1134)
Q Consensus      1064 ~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~ 1101 (1134)
                      ...+|++.|..+  +|.-. ...|++.+.|.+|..|++
T Consensus       591 e~~ghs~~vt~V--~Fl~~-d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  591 EYGGHSSHVTNV--AFLCK-DSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             eeccccceeEEE--EEeeC-CceEEecCCCceEEEEEe
Confidence            556899999988  56564 456666669999999986

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.8e-35  Score=277.88  Aligned_cols=287  Identities=17%  Similarity=0.274  Sum_probs=244.1

Q ss_pred             CCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEE
Q 001163          367 VQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYT  446 (1134)
Q Consensus       367 ~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd  446 (1134)
                      +..-|||+++.|.+|++|...+|.+..+                   +....+.|+.+...||+++||+++... |++||
T Consensus         8 d~~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD   67 (311)
T KOG0315|consen    8 DDPVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYD   67 (311)
T ss_pred             CCceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCCe-eEEEE
Confidence            3445889999999999999999998764                   344667999999999999999998765 99999


Q ss_pred             ccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEE
Q 001163          447 YHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFS  526 (1134)
Q Consensus       447 ~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s  526 (1134)
                      ++++..- +..++.+|...|+++.|..+|+  +++|||.||+++|||++...+.+.++ |.++|+++..+|..  .-|++
T Consensus        68 ~~S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ--teLis  141 (311)
T KOG0315|consen   68 LNSNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ--TELIS  141 (311)
T ss_pred             ccCCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc--ceEEe
Confidence            9998753 5568999999999999999999  89999999999999999977777666 77999999997765  67999


Q ss_pred             ecCCCcEEEEecCCCCceeeecCC-CCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC------eeEEEecCCCCC
Q 001163          527 TATDGKIKAWLYDNLGSRVDYDAP-GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG------AVKRTYHGLGKR  599 (1134)
Q Consensus       527 ~s~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~------~~~~~~~~~~~~  599 (1134)
                      |..+|.|++||+....+...+... ...|.++...|||.+++.+..    .+..++|++...      +++.+++.|.. 
T Consensus       142 ~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~~-  216 (311)
T KOG0315|consen  142 GDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHNG-  216 (311)
T ss_pred             ecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheecccc-
Confidence            999999999999987666555443 348999999999999998854    456999998764      45667777776 


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-ceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeE
Q 001163          600 SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV-NLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLL  678 (1134)
Q Consensus       600 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~  678 (1134)
                      .+..+.+|||+++|++++.|.+++||+.++. +....+.  ++...+..++||.||++|++++.|+.+++|++..+ +.+
T Consensus       217 ~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~--gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~-k~v  293 (311)
T KOG0315|consen  217 HILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT--GHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG-KEV  293 (311)
T ss_pred             eEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEee--cCCceEEeeeeccCccEEEecCCCCceeecccccC-cee
Confidence            7888899999999999999999999999988 3334444  55778999999999999999999999999999998 677


Q ss_pred             EEeccCccc
Q 001163          679 RTVESRTFD  687 (1134)
Q Consensus       679 ~~~~~~~~~  687 (1134)
                      +...+|...
T Consensus       294 ~qy~gh~K~  302 (311)
T KOG0315|consen  294 RQYQGHHKA  302 (311)
T ss_pred             eecCCcccc
Confidence            777776543

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=6.1e-35  Score=298.87  Aligned_cols=316  Identities=19%  Similarity=0.234  Sum_probs=271.6

Q ss_pred             CCCccccccccceeeeEeCCCCC-CcccccCCCCCc----------------------eeEEEeecCCCeeEEEEcCCCC
Q 001163          313 GISDEVNNLSVNILPVAYTPQSL-GQSSYSTDDLPK----------------------TVVMTLNQGSAVKSMDFHPVQQ  369 (1134)
Q Consensus       313 ~h~~~vw~~~~~i~~~~~s~~~~-~l~~~~~d~~~~----------------------~~~~~~~h~~~V~~v~fsp~g~  369 (1134)
                      .|+.||.       +.+|.|... .+++++.+..-+                      ...+....+..|++++|+.+|.
T Consensus       176 ~~~~~V~-------~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~  248 (524)
T KOG0273|consen  176 RHESEVF-------ICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT  248 (524)
T ss_pred             cCCCceE-------EEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC
Confidence            5776655       889999877 466655443200                      1112223557999999999999


Q ss_pred             eEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccC
Q 001163          370 ILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHG  449 (1134)
Q Consensus       370 ~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~  449 (1134)
                       +||+|+.||.++||+...+...                    .+..|.++|.++.|+.+|+||++++.|+++.+||..+
T Consensus       249 -~LatG~~~G~~riw~~~G~l~~--------------------tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~  307 (524)
T KOG0273|consen  249 -LLATGSEDGEARIWNKDGNLIS--------------------TLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT  307 (524)
T ss_pred             -eEEEeecCcEEEEEecCchhhh--------------------hhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC
Confidence             7899999999999998755432                    2678999999999999999999999999999999999


Q ss_pred             CceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecC
Q 001163          450 GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT  529 (1134)
Q Consensus       450 ~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~  529 (1134)
                      |....   .+.-|..+-..|.|-.+..   +++++.|+.|+|+.+...+++.++.+|.++|.++.|++..  .+|+++|.
T Consensus       308 g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg--~LLaS~Sd  379 (524)
T KOG0273|consen  308 GTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTG--SLLASCSD  379 (524)
T ss_pred             ceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCC--ceEEEecC
Confidence            88654   4666888878899987775   8999999999999999999999999999999999996554  89999999


Q ss_pred             CCcEEEEecCCCCceeeecCCCCCeeEEEECcCCC---------EEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCc
Q 001163          530 DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGA---------RLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS  600 (1134)
Q Consensus       530 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~---------~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~  600 (1134)
                      |+++++|++........+..|...|..+.|+|+|.         .+++++.    +.+|++||+..+.++.+|..|.. +
T Consensus       380 D~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~~gv~i~~f~kH~~-p  454 (524)
T KOG0273|consen  380 DGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVESGVPIHTLMKHQE-P  454 (524)
T ss_pred             CCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEccCCceeEeeccCCC-c
Confidence            99999999998888888999999999999999763         5777765    44799999999999999999988 9


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEcc
Q 001163          601 VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA  672 (1134)
Q Consensus       601 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~  672 (1134)
                      |.+++|+|++.++++|+.||.|.+|+..+++.++....   ...|..++|+.+|.+|..+-.|+.+.+.|+.
T Consensus       455 VysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~---~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  455 VYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG---TGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             eEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC---CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            99999999999999999999999999999999999865   3458999999999999999999999998863

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.8e-35  Score=293.20  Aligned_cols=290  Identities=19%  Similarity=0.322  Sum_probs=262.1

Q ss_pred             eeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc
Q 001163          348 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS  427 (1134)
Q Consensus       348 ~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  427 (1134)
                      ......+|...|+.+-|+|+-. ++++++.|++|++||..+|+....                   +.||++.|..++|+
T Consensus       100 l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~-------------------LrGHt~sv~di~~~  159 (406)
T KOG0295|consen  100 LVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS-------------------LRGHTDSVFDISFD  159 (406)
T ss_pred             chhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh-------------------hhccccceeEEEEe
Confidence            3334455999999999999987 789999999999999999988653                   78999999999999


Q ss_pred             CCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCC
Q 001163          428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE  507 (1134)
Q Consensus       428 pd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~  507 (1134)
                      ..|++||+++.|-.+++||..+.  ..+...+.+|+..|.+++|-|.|.  +++|++.|.+|+.|++.+|.++++|.+|.
T Consensus       160 a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h~  235 (406)
T KOG0295|consen  160 ASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGHS  235 (406)
T ss_pred             cCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCch
Confidence            99999999999999999999873  233346889999999999999998  89999999999999999999999999999


Q ss_pred             cCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCC---------------CEEEEEecC
Q 001163          508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADG---------------ARLFSCGTN  572 (1134)
Q Consensus       508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~---------------~~l~~~~~~  572 (1134)
                      ..|..+..  ..||.++++++.|.+|++|-+.+..+...+..|.++|.+++|.|..               .++.+++. 
T Consensus       236 ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr-  312 (406)
T KOG0295|consen  236 EWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR-  312 (406)
T ss_pred             HhEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc-
Confidence            99998876  5777999999999999999999999999999999999999997632               35666655 


Q ss_pred             CCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcC
Q 001163          573 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK  652 (1134)
Q Consensus       573 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp  652 (1134)
                         +.+|++||+.++.++.++.+|.+ .|..++|+|.|+||+++.+|+++++||+.++++...+..|.  .-++++.|+.
T Consensus       313 ---DktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~--hfvt~lDfh~  386 (406)
T KOG0295|consen  313 ---DKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHE--HFVTSLDFHK  386 (406)
T ss_pred             ---cceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCc--ceeEEEecCC
Confidence               45699999999999999999998 99999999999999999999999999999999999999774  4789999999


Q ss_pred             CCcEEEEEECCCcEEEEE
Q 001163          653 EGILLAVSTNDNGIKILA  670 (1134)
Q Consensus       653 ~~~~l~~~~~dg~i~iw~  670 (1134)
                      +..++++|+-|.++++|.
T Consensus       387 ~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  387 TAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             CCceEEeccccceeeeee
Confidence            999999999999999996

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=6.6e-33  Score=285.65  Aligned_cols=481  Identities=17%  Similarity=0.257  Sum_probs=356.5

Q ss_pred             CCCCccccccccceeeeEeCCCCCCccccc---------------CCCCCceeEEEee-cCCCeeEEEEcCC--CCeEEE
Q 001163          312 FGISDEVNNLSVNILPVAYTPQSLGQSSYS---------------TDDLPKTVVMTLN-QGSAVKSMDFHPV--QQILLV  373 (1134)
Q Consensus       312 ~~h~~~vw~~~~~i~~~~~s~~~~~l~~~~---------------~d~~~~~~~~~~~-h~~~V~~v~fsp~--g~~lla  373 (1134)
                      .||++.|-       |++.+|+.-.++++.               +|...-..++.++ ....|+|++||+.  |.+|++
T Consensus       101 ~GH~ddik-------c~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~  173 (626)
T KOG2106|consen  101 LGHNDDIK-------CMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCA  173 (626)
T ss_pred             cCCCCceE-------EEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEE
Confidence            39998655       899999776666542               3333445566666 6789999999983  555544


Q ss_pred             EE-eCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCce
Q 001163          374 VG-TNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDE  452 (1134)
Q Consensus       374 ~g-s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~  452 (1134)
                      .- +.+..+.+||++.+.....                   ...-+..|....|+|.+..|......+.+.+|+.+++..
T Consensus       174 vD~s~~h~lSVWdWqk~~~~~~-------------------vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l  234 (626)
T KOG2106|consen  174 VDDSNPHMLSVWDWQKKAKLGP-------------------VKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSL  234 (626)
T ss_pred             ecCCCccccchhhchhhhccCc-------------------ceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCce
Confidence            42 4556789999988876543                   233566889999999666666666678899999999988


Q ss_pred             eeeeeeeecCC-CCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCC
Q 001163          453 LRNHLEIEAHV-GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDG  531 (1134)
Q Consensus       453 ~~~~~~l~~h~-~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg  531 (1134)
                      .++...++.++ ..|.|++|.++|.   ++||..+|.|.||+..+.+..+....|.+.|.+++...  +| .|++|+.|+
T Consensus       235 ~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr--~G-tllSGgKDR  308 (626)
T KOG2106|consen  235 VKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLR--DG-TLLSGGKDR  308 (626)
T ss_pred             EEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEec--Cc-cEeecCccc
Confidence            77766666654 4699999999998   89999999999999988888777779999999999754  43 567799999


Q ss_pred             cEEEEecCCCCceee--ecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCC
Q 001163          532 KIKAWLYDNLGSRVD--YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTT  609 (1134)
Q Consensus       532 ~i~vwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~  609 (1134)
                      .|..|| ..-+.+..  +....+.++.++-...+  ++.+..    .+.|..=.++.+- .....+|.+ ....++.+|+
T Consensus       309 ki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTt----rN~iL~Gt~~~~f-~~~v~gh~d-elwgla~hps  379 (626)
T KOG2106|consen  309 KIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTT----RNFILQGTLENGF-TLTVQGHGD-ELWGLATHPS  379 (626)
T ss_pred             eEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeec----cceEEEeeecCCc-eEEEEeccc-ceeeEEcCCC
Confidence            999999 33333333  33334577776644333  555542    2234443444332 334455665 7888999999


Q ss_pred             CCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCccccc
Q 001163          610 KNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDAS  689 (1134)
Q Consensus       610 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~  689 (1134)
                      .+.+++++.|+.+++|+  ..+++.+...   ..++.|+.|+|.| .+|.|+..|...+.|.++. ..+..-        
T Consensus       380 ~~q~~T~gqdk~v~lW~--~~k~~wt~~~---~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-~lv~~~--------  444 (626)
T KOG2106|consen  380 KNQLLTCGQDKHVRLWN--DHKLEWTKII---EDPAECADFHPSG-VVAVGTATGRWFVLDTETQ-DLVTIH--------  444 (626)
T ss_pred             hhheeeccCcceEEEcc--CCceeEEEEe---cCceeEeeccCcc-eEEEeeccceEEEEecccc-eeEEEE--------
Confidence            99999999999999999  4455544433   3467899999999 9999999999999998764 222111        


Q ss_pred             ccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccc
Q 001163          690 RVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLR  769 (1134)
Q Consensus       690 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~  769 (1134)
                                                                                                      
T Consensus       445 --------------------------------------------------------------------------------  444 (626)
T KOG2106|consen  445 --------------------------------------------------------------------------------  444 (626)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEE
Q 001163          770 LPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCF  849 (1134)
Q Consensus       770 ~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v  849 (1134)
                          ....+++++.|+|+|.++++++.|+.|.||.++..                     |......-..  +..+|+.+
T Consensus       445 ----~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~---------------------g~~y~r~~k~--~gs~ithL  497 (626)
T KOG2106|consen  445 ----TDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN---------------------GRKYSRVGKC--SGSPITHL  497 (626)
T ss_pred             ----ecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC---------------------CcEEEEeeee--cCceeEEe
Confidence                02467899999999999999999999999988743                     2222222222  45889999


Q ss_pred             EEcCCCCeEEEee-CCeEEEEEccCCeEEEEec------------------CCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 001163          850 ALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFM------------------PPPPAATFLAFHPQDNNIIAIGMEDSSIQ  910 (1134)
Q Consensus       850 ~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~------------------~~~~~v~~l~~sp~~~~~la~g~~dg~i~  910 (1134)
                      .||+|++++.+-+ |-.|-.|.......+...+                  .+...|..++-+. +.+++|+|.+.|.|+
T Consensus       498 DwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~-~~~~lA~gdd~g~v~  576 (626)
T KOG2106|consen  498 DWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSH-CEKLLASGDDFGKVH  576 (626)
T ss_pred             eecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhh-hhhhhhccccCceEE
Confidence            9999999999998 7889999543322222111                  2344567777777 889999999999999


Q ss_pred             EEEcccc---eEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEEC
Q 001163          911 IYNVRVD---EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWST  956 (1134)
Q Consensus       911 iwd~~~~---~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~  956 (1134)
                      +|...-.   .....+.+|++.|++++|+.+..++++.+.|..|..|++
T Consensus       577 lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  577 LFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             EEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence            9987643   345678899999999999999999999899999999986

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.1e-34  Score=270.77  Aligned_cols=295  Identities=14%  Similarity=0.226  Sum_probs=250.8

Q ss_pred             cEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCe--eEEEecCCCCC
Q 001163          522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA--VKRTYHGLGKR  599 (1134)
Q Consensus       522 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~  599 (1134)
                      -+|++++.|.+||+|...++.+...+....+.|..+.+.|+++.|++++.     ..|++||++++.  ++.+|.+|.+ 
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-----qhvRlyD~~S~np~Pv~t~e~h~k-   84 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-----QHVRLYDLNSNNPNPVATFEGHTK-   84 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-----CeeEEEEccCCCCCceeEEeccCC-
Confidence            57999999999999999999999999988999999999999999999874     359999999875  6889999987 


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEE
Q 001163          600 SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLR  679 (1134)
Q Consensus       600 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~  679 (1134)
                      .|.++.|..+|+++++||+||+++|||++.-...+.++   +..+|+++..+|+...|+++..+|.|++||+.+. ....
T Consensus        85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~---~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~-~c~~  160 (311)
T KOG0315|consen   85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ---HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN-SCTH  160 (311)
T ss_pred             ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc---CCCCcceEEecCCcceEEeecCCCcEEEEEccCC-cccc
Confidence            89999999999999999999999999999855555553   3578999999999999999999999999998765 1111


Q ss_pred             EeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeeccc
Q 001163          680 TVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEI  759 (1134)
Q Consensus       680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~  759 (1134)
                      .+                                                                              
T Consensus       161 ~l------------------------------------------------------------------------------  162 (311)
T KOG0315|consen  161 EL------------------------------------------------------------------------------  162 (311)
T ss_pred             cc------------------------------------------------------------------------------
Confidence            11                                                                              


Q ss_pred             CCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCC
Q 001163          760 TEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISD  839 (1134)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  839 (1134)
                                .|.  ....|.++++.|||+.++++...|...+|++.....                 .+...-...++ 
T Consensus       163 ----------iPe--~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~-----------------~s~l~P~~k~~-  212 (311)
T KOG0315|consen  163 ----------IPE--DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQT-----------------ASELEPVHKFQ-  212 (311)
T ss_pred             ----------CCC--CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCc-----------------cccceEhhhee-
Confidence                      011  346789999999999999999999999999875311                 11111111122 


Q ss_pred             CCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCC-eEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccc
Q 001163          840 TNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTF-KTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD  917 (1134)
Q Consensus       840 ~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~  917 (1134)
                       .|.+.+..+.+|||+++||+++ |.+++||+.++. +.-..+++|...+...+||. |++||++|+.|+.+++|++..+
T Consensus       213 -ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~  290 (311)
T KOG0315|consen  213 -AHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAG  290 (311)
T ss_pred             -cccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccC
Confidence             3899999999999999999998 999999999988 66667889999999999999 9999999999999999999999


Q ss_pred             eEEEeccCccCceEEEEEe
Q 001163          918 EVKTKLKGHQKRITGLAFS  936 (1134)
Q Consensus       918 ~~~~~l~~h~~~V~~l~~s  936 (1134)
                      +.++.+.+|-....|++..
T Consensus       291 k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  291 KEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             ceeeecCCcccccEEEEee
Confidence            9999999998888887764

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1e-33  Score=281.13  Aligned_cols=339  Identities=17%  Similarity=0.245  Sum_probs=286.4

Q ss_pred             eeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEe
Q 001163          458 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWL  537 (1134)
Q Consensus       458 ~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd  537 (1134)
                      .|..|+++|.+++.+|+.+  +++||+.|....+|++.+|.....+.+|...|+++.|+.  +|.+|++|+.+|.|++|.
T Consensus        59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh--dgtlLATGdmsG~v~v~~  134 (399)
T KOG0296|consen   59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH--DGTLLATGDMSGKVLVFK  134 (399)
T ss_pred             ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc--CceEEEecCCCccEEEEE
Confidence            5888999999999999777  899999999999999999999999999999999999854  559999999999999999


Q ss_pred             cCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe
Q 001163          538 YDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG  617 (1134)
Q Consensus       538 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  617 (1134)
                      ..++.....+......+.=+.|+|.+..|+.|+.|+    .+.+|.+.++...+.+.+|.. ++++-.|.|+|+.++++.
T Consensus       135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DG----svWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~~tgy  209 (399)
T KOG0296|consen  135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDG----SVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRILTGY  209 (399)
T ss_pred             cccCceEEEeecccCceEEEEecccccEEEeecCCC----cEEEEECCCcceeeEecCCCC-CcccccccCCCceEEEEe
Confidence            999998888877777889999999999999997655    499999999989999999887 899999999999999999


Q ss_pred             CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhh
Q 001163          618 DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIV  697 (1134)
Q Consensus       618 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  697 (1134)
                      .||+|++||..+++++..+.... .....++.++..+..++.|+.++.+.+-+..+++ .+....+              
T Consensus       210 ~dgti~~Wn~ktg~p~~~~~~~e-~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK-Vv~~~n~--------------  273 (399)
T KOG0296|consen  210 DDGTIIVWNPKTGQPLHKITQAE-GLELPCISLNLAGSTLTKGNSEGVACGVNNGSGK-VVNCNNG--------------  273 (399)
T ss_pred             cCceEEEEecCCCceeEEecccc-cCcCCccccccccceeEeccCCccEEEEccccce-EEEecCC--------------
Confidence            99999999999999999987544 2356789999999999999999999887766551 1111100              


Q ss_pred             cccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccc
Q 001163          698 KAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAM  777 (1134)
Q Consensus       698 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~  777 (1134)
                                                                                                      
T Consensus       274 --------------------------------------------------------------------------------  273 (399)
T KOG0296|consen  274 --------------------------------------------------------------------------------  273 (399)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCe
Q 001163          778 RVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSY  857 (1134)
Q Consensus       778 ~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~  857 (1134)
                               ++..+-....                                            .....|..+.++..-.+
T Consensus       274 ---------~~~~l~~~~e--------------------------------------------~~~esve~~~~ss~lpL  300 (399)
T KOG0296|consen  274 ---------TVPELKPSQE--------------------------------------------ELDESVESIPSSSKLPL  300 (399)
T ss_pred             ---------CCccccccch--------------------------------------------hhhhhhhhcccccccch
Confidence                     0000000000                                            01233445555666678


Q ss_pred             EEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEe
Q 001163          858 VMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFS  936 (1134)
Q Consensus       858 la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s  936 (1134)
                      .|+|+ ||+|.|||+...+....+. |...|+.+.|-+  ..+|++++.+|.|+.||.++|+++.++.||...|.+++++
T Consensus       301 ~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls  377 (399)
T KOG0296|consen  301 AACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALS  377 (399)
T ss_pred             hhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEc
Confidence            88998 9999999998877666665 888899999986  4689999999999999999999999999999999999999


Q ss_pred             eCCCEEEEEeCCCcEEEEECC
Q 001163          937 NTLNVLVSSGADSQLCVWSTD  957 (1134)
Q Consensus       937 ~d~~~l~s~s~Dg~i~iwd~~  957 (1134)
                      |+.++++|+|.|++.+||++.
T Consensus       378 ~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  378 PQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             CCCcEEEEecCCCeEEEEecC
Confidence            999999999999999999864

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.6e-33  Score=279.76  Aligned_cols=329  Identities=16%  Similarity=0.209  Sum_probs=277.6

Q ss_pred             cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163          414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD  493 (1134)
Q Consensus       414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd  493 (1134)
                      |..|+++|.+++.+|+.+++|+|+.|....+|++.+|....   .+.+|+..|+++.|+.||.  +|+||+.+|.|+||+
T Consensus        60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~~  134 (399)
T KOG0296|consen   60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVFK  134 (399)
T ss_pred             hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEEE
Confidence            67899999999999999999999999999999999998555   6889999999999999999  899999999999999


Q ss_pred             CCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCC
Q 001163          494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK  573 (1134)
Q Consensus       494 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~  573 (1134)
                      ..++.....+...-+.+.-+.|+|..  .+|+.|+.||.+-+|.+.+......+.+|..++++=.|.|+|++++++..+ 
T Consensus       135 ~stg~~~~~~~~e~~dieWl~WHp~a--~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d-  211 (399)
T KOG0296|consen  135 VSTGGEQWKLDQEVEDIEWLKWHPRA--HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDD-  211 (399)
T ss_pred             cccCceEEEeecccCceEEEEecccc--cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecC-
Confidence            99999999887677778889998855  899999999999999999887888888999999999999999999999764 


Q ss_pred             CCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecC------CCCCCcce
Q 001163          574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD------GGLQASPC  647 (1134)
Q Consensus       574 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~  647 (1134)
                         +.|++||+.++.++.++.+.......++.++..+..++.|+.++.+++-+..+|+.+......      ++...+.|
T Consensus       212 ---gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es  288 (399)
T KOG0296|consen  212 ---GTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES  288 (399)
T ss_pred             ---ceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence               469999999999999998777667888999999999999999999999999999888776521      11122233


Q ss_pred             EEE---cCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccc
Q 001163          648 IRF---NKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAA  724 (1134)
Q Consensus       648 v~~---sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  724 (1134)
                      +.+   +..-.+.|+|+-||+|.|||+....                                                 
T Consensus       289 ve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~-------------------------------------------------  319 (399)
T KOG0296|consen  289 VESIPSSSKLPLAACGSVDGTIAIYDLAAST-------------------------------------------------  319 (399)
T ss_pred             hhhcccccccchhhcccccceEEEEecccch-------------------------------------------------
Confidence            333   3344556666666666666654320                                                 


Q ss_pred             cccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeee
Q 001163          725 AMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWK  804 (1134)
Q Consensus       725 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~  804 (1134)
                                                                                                      
T Consensus       320 --------------------------------------------------------------------------------  319 (399)
T KOG0296|consen  320 --------------------------------------------------------------------------------  319 (399)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCC
Q 001163          805 WPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPP  883 (1134)
Q Consensus       805 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~  883 (1134)
                                                 +..  .-  .|...|..+.|-+ ..+|++++ +|.|+.||.++|+++.++.+|
T Consensus       320 ---------------------------~R~--~c--~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH  367 (399)
T KOG0296|consen  320 ---------------------------LRH--IC--EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGH  367 (399)
T ss_pred             ---------------------------hhe--ec--cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecC
Confidence                                       000  00  1677788888888 56677776 999999999999999999999


Q ss_pred             CCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcc
Q 001163          884 PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVR  915 (1134)
Q Consensus       884 ~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~  915 (1134)
                      ...|.+++++| +.+++++++.|++.+||++.
T Consensus       368 ~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  368 QMGILDFALSP-QKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             chheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence            99999999999 89999999999999999864

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.6e-34  Score=284.92  Aligned_cols=293  Identities=17%  Similarity=0.266  Sum_probs=261.9

Q ss_pred             ceeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEE
Q 001163          347 KTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM  425 (1134)
Q Consensus       347 ~~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  425 (1134)
                      -++.+.+. |.+.|.|+++.|-.+ .+++|+.|++|.|||+.+|++..+                   +.||-..|..++
T Consensus       141 wKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~vr~va  200 (460)
T KOG0285|consen  141 WKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLT-------------------LTGHIETVRGVA  200 (460)
T ss_pred             ceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEe-------------------ecchhheeeeee
Confidence            34455665 999999999999977 569999999999999999987764                   789999999999


Q ss_pred             EcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecC
Q 001163          426 WSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG  505 (1134)
Q Consensus       426 ~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  505 (1134)
                      +|+-..||++++.|+.|+.||++..+.++   .+.||-..|.|++..|.-.  .|+||+.|.+++|||+++...+..+.|
T Consensus       201 vS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l~G  275 (460)
T KOG0285|consen  201 VSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVLSG  275 (460)
T ss_pred             ecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEecC
Confidence            99999999999999999999999998777   6789999999999999888  899999999999999999999999999


Q ss_pred             CCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC
Q 001163          506 HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES  585 (1134)
Q Consensus       506 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~  585 (1134)
                      |..+|..+.+.+..  ..+++||.|++|++||+..++....+..|...+.+++.+|....+++++.|.     |..|++.
T Consensus       276 H~~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-----ik~w~~p  348 (460)
T KOG0285|consen  276 HTNPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-----IKQWKLP  348 (460)
T ss_pred             CCCcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-----ceeccCC
Confidence            99999999886554  5799999999999999999999999999999999999999999999988654     9999999


Q ss_pred             CCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEec---C---CCCCCcceEEEcCCCcEEEE
Q 001163          586 EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA---D---GGLQASPCIRFNKEGILLAV  659 (1134)
Q Consensus       586 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~---~~~~~v~~v~~sp~~~~l~~  659 (1134)
                      .|..+..+.+|.. .+.+++.+.|+ ++++|+++|.+.+||.++|-..+....   .   .....|.+.+|...|..|++
T Consensus       349 ~g~f~~nlsgh~~-iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit  426 (460)
T KOG0285|consen  349 EGEFLQNLSGHNA-IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLIT  426 (460)
T ss_pred             ccchhhccccccc-eeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEe
Confidence            9999999998887 88999988775 889999999999999999876655421   1   12345789999999999999


Q ss_pred             EECCCcEEEEEccC
Q 001163          660 STNDNGIKILANAD  673 (1134)
Q Consensus       660 ~~~dg~i~iw~~~~  673 (1134)
                      |..|.+|++|.-..
T Consensus       427 ~eadKtIk~~keDe  440 (460)
T KOG0285|consen  427 GEADKTIKMYKEDE  440 (460)
T ss_pred             ccCCcceEEEeccc
Confidence            99999999997543

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=3.3e-33  Score=266.52  Aligned_cols=285  Identities=21%  Similarity=0.338  Sum_probs=231.3

Q ss_pred             cCCCeeEEEEcCC-CCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001163          355 QGSAVKSMDFHPV-QQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF  433 (1134)
Q Consensus       355 h~~~V~~v~fsp~-g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l  433 (1134)
                      |.+.|..++|+|- |. +||+|+.|+.|+||+...+....-++               .+-.+|+..|.+++|+|.|++|
T Consensus        13 h~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~ck~---------------vld~~hkrsVRsvAwsp~g~~L   76 (312)
T KOG0645|consen   13 HKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTCKT---------------VLDDGHKRSVRSVAWSPHGRYL   76 (312)
T ss_pred             CCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEEEE---------------eccccchheeeeeeecCCCcEE
Confidence            3444448999998 76 88999999999999998543222111               1236899999999999999999


Q ss_pred             EEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC---ceeEEecCCCcCE
Q 001163          434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG---TKQYIFEGHESPV  510 (1134)
Q Consensus       434 as~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~---~~~~~~~~h~~~v  510 (1134)
                      |+||.|.++.||.-..++ ......++||...|.|++|+++|.  +|+||+.|++|-||.+..+   ++...++.|...|
T Consensus        77 a~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDV  153 (312)
T KOG0645|consen   77 ASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDV  153 (312)
T ss_pred             EEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeeccccccc
Confidence            999999999999877554 556668999999999999999999  8999999999999998754   5678899999999


Q ss_pred             EEEeccccCCccEEEEecCCCcEEEEecCC---CCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC
Q 001163          511 YSICPHHKENIQFIFSTATDGKIKAWLYDN---LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG  587 (1134)
Q Consensus       511 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~  587 (1134)
                      ..+.|+|..  .+|+++|.|.+|++|+-..   -.+...+..+...|.+++|++.|..|++++.|    ..+++|-..  
T Consensus       154 K~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD----~tv~Iw~~~--  225 (312)
T KOG0645|consen  154 KHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDD----GTVSIWRLY--  225 (312)
T ss_pred             cEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCC----cceEeeeec--
Confidence            999999887  6999999999999998663   23466788888899999999999999999764    459999754  


Q ss_pred             eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc------eeEEEecCCCCCCcceEEEcCC-CcEEEEE
Q 001163          588 AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN------LLASIDADGGLQASPCIRFNKE-GILLAVS  660 (1134)
Q Consensus       588 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~v~~sp~-~~~l~~~  660 (1134)
                         ..+...+...+..+.|.  ...|++++.|+.|+++.-...-      .+... .+.|...|+++.|+|. ..+|+++
T Consensus       226 ---~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~dVNsV~w~p~~~~~L~s~  299 (312)
T KOG0645|consen  226 ---TDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVDVNSVQWNPKVSNRLASG  299 (312)
T ss_pred             ---cCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhh-hcccccccceEEEcCCCCCceeec
Confidence               23444444478889998  5689999999999999765431      11111 2244668999999994 6899999


Q ss_pred             ECCCcEEEEEcc
Q 001163          661 TNDNGIKILANA  672 (1134)
Q Consensus       661 ~~dg~i~iw~~~  672 (1134)
                      ++||.+++|.+.
T Consensus       300 ~DDG~v~~W~l~  311 (312)
T KOG0645|consen  300 GDDGIVNFWELE  311 (312)
T ss_pred             CCCceEEEEEec
Confidence            999999999864

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.3e-34  Score=291.02  Aligned_cols=284  Identities=20%  Similarity=0.330  Sum_probs=250.1

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la  434 (1134)
                      -...|..|.|.|+|++| .+|+..|.+.+|+..+      ++|+             .++..|..+|.++.||++|.+++
T Consensus        95 vkc~V~~v~WtPeGRRL-ltgs~SGEFtLWNg~~------fnFE-------------tilQaHDs~Vr~m~ws~~g~wmi  154 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRL-LTGSQSGEFTLWNGTS------FNFE-------------TILQAHDSPVRTMKWSHNGTWMI  154 (464)
T ss_pred             cccceeeEEEcCCCcee-EeecccccEEEecCce------eeHH-------------HHhhhhcccceeEEEccCCCEEE
Confidence            45689999999999976 6999999999999732      1111             13678999999999999999999


Q ss_pred             EEeCCCEEEEEEccCCceeeeeeeeecCC-CCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEE
Q 001163          435 VAYSKHIVHLYTYHGGDELRNHLEIEAHV-GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI  513 (1134)
Q Consensus       435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~-~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  513 (1134)
                      +|+.+|.|++|+..-.. ++   .+.+|. ..|++++|+|++.  .++|||.||+|+|||....+.-..++||.-.|.++
T Consensus       155 SgD~gG~iKyWqpnmnn-Vk---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksv  228 (464)
T KOG0284|consen  155 SGDKGGMIKYWQPNMNN-VK---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSV  228 (464)
T ss_pred             EcCCCceEEecccchhh-hH---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCccee
Confidence            99999999999987543 22   345554 8999999999888  79999999999999999998888899999999999


Q ss_pred             eccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEe
Q 001163          514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTY  593 (1134)
Q Consensus       514 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~  593 (1134)
                      .|+|..  .+|++++.|..|++||.+++.++..+..|...|..+.|++++++|++++.|.    .++++|+++.+.++++
T Consensus       229 dWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~----~~kv~DiR~mkEl~~~  302 (464)
T KOG0284|consen  229 DWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ----SCKVFDIRTMKELFTY  302 (464)
T ss_pred             ccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCc----eEEEEehhHhHHHHHh
Confidence            999877  6899999999999999999999999999999999999999999999998644    6999999999999999


Q ss_pred             cCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEcc
Q 001163          594 HGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA  672 (1134)
Q Consensus       594 ~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~  672 (1134)
                      .+|.+ .+.++.|+|-. ..|.+|+.||.|..|.+...+++..+.. .|...|.+++|+|=|..|++|+.|.++++|.-.
T Consensus       303 r~Hkk-dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  303 RGHKK-DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             hcchh-hheeeccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeeccccceeEeecCCCcceeeeccC
Confidence            99998 89999999976 5667788999999999987777766643 567789999999999999999999999999743

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1e-29  Score=272.54  Aligned_cols=546  Identities=14%  Similarity=0.146  Sum_probs=386.1

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCC-CCEEEEEEecCCCceEEEEEeCCCeEEEEECC
Q 001163          417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHV-GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV  495 (1134)
Q Consensus       417 h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~-~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~  495 (1134)
                      -..+|.++|||.+.+.||.+-.||.|.||++..+-...  ..+.++. ..|.+++|++.++   |+|.+.+|.|.-||+.
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~--~vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~   98 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE--PVIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLH   98 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCCceee--EEEecCCCCceeeEEEccCCe---EEeecCCceEEEEecc
Confidence            35699999999999999999999999999999865433  2455554 5799999996664   8999999999999999


Q ss_pred             CCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceee--ecCCCCCeeEEEECcCCCEEEEEecCC
Q 001163          496 TGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD--YDAPGHSSTMMAYSADGARLFSCGTNK  573 (1134)
Q Consensus       496 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~~~  573 (1134)
                      +++.++.+....+.|++++.++..  ..++.|+.||.+..++...+.....  +....+.+.++.|+|++..+++|+.| 
T Consensus        99 ~lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D-  175 (691)
T KOG2048|consen   99 TLKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID-  175 (691)
T ss_pred             cCceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC-
Confidence            999999999999999999997766  7899999999777777665544433  34455789999999999999999764 


Q ss_pred             CCCeEEEEEeCCCCeeEEEec-----CC--CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcc
Q 001163          574 EGESYLVEWNESEGAVKRTYH-----GL--GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASP  646 (1134)
Q Consensus       574 ~~~~~i~~wd~~~~~~~~~~~-----~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  646 (1134)
                         +.|++||..++..+....     ..  ...-|.++.|-.+ ..+++|...|+|.+||...+.+++....+  ...|.
T Consensus       176 ---g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h--~adVl  249 (691)
T KOG2048|consen  176 ---GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCH--DADVL  249 (691)
T ss_pred             ---ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhh--hccee
Confidence               469999999997766221     11  2224677777755 58999999999999999999999998876  66899


Q ss_pred             eEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccc
Q 001163          647 CIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAM  726 (1134)
Q Consensus       647 ~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  726 (1134)
                      +++.++++.++++++.|+.|.-|...+....                                                 
T Consensus       250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~-------------------------------------------------  280 (691)
T KOG2048|consen  250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSE-------------------------------------------------  280 (691)
T ss_pred             EEEEcCCCCeEEEccCCCceEEEEecCCccc-------------------------------------------------
Confidence            9999999999999999999988876554210                                                 


Q ss_pred             cCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecC
Q 001163          727 VGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWP  806 (1134)
Q Consensus       727 ~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~  806 (1134)
                                                 |-..            .....|...|.++++.++  .+++|+.|..+.+-...
T Consensus       281 ---------------------------wv~~------------~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~  319 (691)
T KOG2048|consen  281 ---------------------------WVIN------------SRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSR  319 (691)
T ss_pred             ---------------------------eeee------------ccccCCcccceeeeeecc--eEEecceeeEEEEcccc
Confidence                                       1111            111237888999999988  79999999988874322


Q ss_pred             CCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCe---------EE
Q 001163          807 RNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFK---------TM  877 (1134)
Q Consensus       807 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~---------~~  877 (1134)
                      ..              ...+-   . +....    ...  ..+...+..++++.-....+.+|.+.+..         +.
T Consensus       320 ~~--------------~~~~h---~-~~~~~----p~~--~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Ll  375 (691)
T KOG2048|consen  320 EF--------------KNMDH---R-QKNLF----PAS--DRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLL  375 (691)
T ss_pred             cc--------------Cchhh---h-ccccc----ccc--ceeecCccceEEEEeccccccceeccCcccccccChhhhe
Confidence            10              00000   0 00000    011  12334455556666668888999886652         12


Q ss_pred             EEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEE-----EeccCccCceEEEEEeeCCCEEEEEe-CCCcE
Q 001163          878 TTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVK-----TKLKGHQKRITGLAFSNTLNVLVSSG-ADSQL  951 (1134)
Q Consensus       878 ~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~-----~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~i  951 (1134)
                      +........|.|.+.|| +|+++|.+.- ..++||.+.....+     .......-....+.|+-|+..++.++ .+..+
T Consensus       376 kl~~k~~~nIs~~aiSP-dg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~l  453 (691)
T KOG2048|consen  376 KLFTKEKENISCAAISP-DGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSL  453 (691)
T ss_pred             eeecCCccceeeeccCC-CCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEeccccee
Confidence            22233556799999999 9999998864 45788887652222     11222334567889999999888888 67778


Q ss_pred             EEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCcccceeeccCCCccCEEEEEEcc
Q 001163          952 CVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSC 1030 (1134)
Q Consensus       952 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~ 1030 (1134)
                      .++++.+........++..    .....|..+..|+||+|+|+ +..|.|.+|++++++......  .-...|+.++|+|
T Consensus       454 e~~el~~ps~kel~~~~~~----~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~--rln~~vTa~~~~~  527 (691)
T KOG2048|consen  454 EEFELETPSFKELKSIQSQ----AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV--RLNIDVTAAAFSP  527 (691)
T ss_pred             EEEEecCcchhhhhccccc----cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh--ccCcceeeeeccc
Confidence            8888776543322221111    12257999999999999999 689999999999887644442  2247899999995


Q ss_pred             -CCCEEEEEecCCcEEEeecCCCcceeecCCC--cccCCC---CCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCC
Q 001163         1031 -DSQSIYVAFEEGSVGVLTASTLRLRCRINPT--AYLPTN---PSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPL 1102 (1134)
Q Consensus      1031 -dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~--~~~~~~---h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~ 1102 (1134)
                       +-..|+.+..|+.|.-||++..+ +.++...  ..+|..   --..+..  +.|+|.+...+++ -+.+-+++.|.+
T Consensus       528 ~~~~~lvvats~nQv~efdi~~~~-l~~ws~~nt~nlpk~~~~l~~~~~g--isfd~~n~s~~~~-~~a~w~~~id~~  601 (691)
T KOG2048|consen  528 FVRNRLVVATSNNQVFEFDIEARN-LTRWSKNNTRNLPKEPKTLIPGIPG--ISFDPKNSSRFIV-YDAHWSCLIDFS  601 (691)
T ss_pred             cccCcEEEEecCCeEEEEecchhh-hhhhhhccccccccChhhcCCCCce--EEeCCCCccEEEE-EcCcEEEEEecC
Confidence             56678999999999999995443 2222211  111211   1122333  4777765555543 344556666665

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=5.1e-33  Score=269.14  Aligned_cols=287  Identities=16%  Similarity=0.238  Sum_probs=249.5

Q ss_pred             EEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCC
Q 001163          351 MTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG  430 (1134)
Q Consensus       351 ~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~  430 (1134)
                      ...+|.+.|+.+.|+|+|. ++|+|+.|..|.+|++.....-.                  ..+++|+++|..+.|.+|+
T Consensus        42 ~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~~d~  102 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGMRDG  102 (338)
T ss_pred             hcCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeeccCC
Confidence            3445999999999999999 67999999999999976543211                  1367999999999999999


Q ss_pred             CEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCE
Q 001163          431 TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV  510 (1134)
Q Consensus       431 ~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v  510 (1134)
                      +.|++++.|.+|+.||+++|+..+   .+.+|..-|+++.-+.-|.+ ++.|++.|+++++||+++..+++++. ...++
T Consensus       103 s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyql  177 (338)
T KOG0265|consen  103 SHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQL  177 (338)
T ss_pred             CEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cceeE
Confidence            999999999999999999999877   67889999999996666766 78899999999999999999988886 56778


Q ss_pred             EEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCC----
Q 001163          511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE----  586 (1134)
Q Consensus       511 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~----  586 (1134)
                      ++++|....  ..+++|+-|+.|++||++.......+.+|...|+.+..+++|.++++.+.+    ..+++||++-    
T Consensus       178 tAv~f~d~s--~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd----~tvrvwd~rp~~p~  251 (338)
T KOG0265|consen  178 TAVGFKDTS--DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMD----NTVRVWDVRPFAPS  251 (338)
T ss_pred             EEEEecccc--cceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccccccc----ceEEEEEecccCCC
Confidence            999885444  679999999999999999999999999999999999999999999998874    4699999874    


Q ss_pred             CeeEEEecCCCCC---ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECC
Q 001163          587 GAVKRTYHGLGKR---SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND  663 (1134)
Q Consensus       587 ~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d  663 (1134)
                      .+++..+.++.-.   ....++|+|++..+-+|+.|..+++||......+..+++|  ...|++++|+|....|.+++.|
T Consensus       252 ~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh--~gsvn~~~Fhp~e~iils~~sd  329 (338)
T KOG0265|consen  252 QRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGH--YGSVNEVDFHPTEPIILSCSSD  329 (338)
T ss_pred             CceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCc--ceeEEEeeecCCCcEEEEeccC
Confidence            3557777776321   2446789999999999999999999999998999988865  7799999999999999999999


Q ss_pred             CcEEEE
Q 001163          664 NGIKIL  669 (1134)
Q Consensus       664 g~i~iw  669 (1134)
                      .+|++=
T Consensus       330 k~i~lg  335 (338)
T KOG0265|consen  330 KTIYLG  335 (338)
T ss_pred             ceeEee
Confidence            999874

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.4e-32  Score=266.03  Aligned_cols=251  Identities=18%  Similarity=0.318  Sum_probs=217.8

Q ss_pred             ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEE
Q 001163          413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW  492 (1134)
Q Consensus       413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  492 (1134)
                      .+.+|++.|+.+.|+|+|.+||+|+.|..|.+|++....  .....+++|++.|..+.|.+|+.  .++++|.|++|+.|
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGW  117 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEEE
Confidence            478999999999999999999999999999999976543  23446889999999999999999  89999999999999


Q ss_pred             ECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecC
Q 001163          493 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN  572 (1134)
Q Consensus       493 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~  572 (1134)
                      |+++|++++.+++|..-|+++.... .+-.++.+++.|+++++||++..+....+.. ..+++++.|...+..+.+++-|
T Consensus       118 D~~tG~~~rk~k~h~~~vNs~~p~r-rg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggId  195 (338)
T KOG0265|consen  118 DAETGKRIRKHKGHTSFVNSLDPSR-RGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGID  195 (338)
T ss_pred             ecccceeeehhccccceeeecCccc-cCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeecccc
Confidence            9999999999999999999987432 2336788999999999999997776665542 4589999999999999999886


Q ss_pred             CCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC----ceeEEEecCCCCC--Ccc
Q 001163          573 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV----NLLASIDADGGLQ--ASP  646 (1134)
Q Consensus       573 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~--~v~  646 (1134)
                      ++    |++||++.+....++.||.+ .|+.+..+++|.++.+-+.|.++++||++..    +++..+.++.+.-  ...
T Consensus       196 n~----ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL  270 (338)
T KOG0265|consen  196 ND----IKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLL  270 (338)
T ss_pred             Cc----eeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcc
Confidence            54    99999999999999999998 9999999999999999999999999998743    3466666554433  345


Q ss_pred             eEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163          647 CIRFNKEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       647 ~v~~sp~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      .++|+|++..+..|+.|+.+++||....
T Consensus       271 ~cswsp~~~~i~ags~dr~vyvwd~~~r  298 (338)
T KOG0265|consen  271 KCSWSPNGTKITAGSADRFVYVWDTTSR  298 (338)
T ss_pred             eeeccCCCCccccccccceEEEeecccc
Confidence            7899999999999999999999997654

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.3e-33  Score=309.03  Aligned_cols=276  Identities=16%  Similarity=0.219  Sum_probs=235.9

Q ss_pred             ccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC
Q 001163          775 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN  854 (1134)
Q Consensus       775 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d  854 (1134)
                      ....++|..|++|++.++.|-.|..|++|.+...+..+                        ++   +...+        
T Consensus       377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~------------------------lk---~~~~l--------  421 (707)
T KOG0263|consen  377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKK------------------------LK---DASDL--------  421 (707)
T ss_pred             cCCcceeEeecCCcchhhccccccEEEEEecchhhhcc------------------------cc---chhhh--------
Confidence            45678999999999999999999999999876321100                        00   00110        


Q ss_pred             CCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEE
Q 001163          855 DSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGL  933 (1134)
Q Consensus       855 g~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l  933 (1134)
                       ..+=+.+ |-.+.+.|-.+....+++.+|.++|..+.|+| +.++|++++.|+++|+|.+.+..++..++||..+|+++
T Consensus       422 -~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV  499 (707)
T KOG0263|consen  422 -SNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDV  499 (707)
T ss_pred             -ccccccccchhhhhccccCCceeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeE
Confidence             1111122 32355666667777778999999999999999 89999999999999999999999999999999999999


Q ss_pred             EEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCcccce
Q 001163          934 AFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLECLK 1012 (1134)
Q Consensus       934 ~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~ 1012 (1134)
                      .|+|-|-++||+|.|++.++|......     .+.+..||.   +.|.|+.|+|++.|+++ +.|.+|++||+.+|..++
T Consensus       500 ~F~P~GyYFatas~D~tArLWs~d~~~-----PlRifaghl---sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR  571 (707)
T KOG0263|consen  500 QFAPRGYYFATASHDQTARLWSTDHNK-----PLRIFAGHL---SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR  571 (707)
T ss_pred             EecCCceEEEecCCCceeeeeecccCC-----chhhhcccc---cccceEEECCcccccccCCCCceEEEEEcCCCcEEE
Confidence            999999999999999999999988744     667777887   47999999999999999 589999999999999999


Q ss_pred             eeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEec
Q 001163         1013 QFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLT 1092 (1134)
Q Consensus      1013 ~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~ 1092 (1134)
                      .|.  ||.++|++++|||+|++|++|++||.|.+||+.+++++..+.       +|++.|+++  +|+. ||..||+|+.
T Consensus       572 iF~--GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~-------~Ht~ti~Sl--sFS~-dg~vLasgg~  639 (707)
T KOG0263|consen  572 IFT--GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK-------GHTGTIYSL--SFSR-DGNVLASGGA  639 (707)
T ss_pred             Eec--CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh-------cccCceeEE--EEec-CCCEEEecCC
Confidence            998  899999999999999999999999999999999999987766       788999999  6777 7999999999


Q ss_pred             CCcEEEEeCCCCCCC
Q 001163         1093 DGGVYIIEPLEAEGR 1107 (1134)
Q Consensus      1093 Dg~v~vW~~~~~~~~ 1107 (1134)
                      |.+|++||+....+.
T Consensus       640 DnsV~lWD~~~~~~~  654 (707)
T KOG0263|consen  640 DNSVRLWDLTKVIEL  654 (707)
T ss_pred             CCeEEEEEchhhccc
Confidence            999999999876654

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3.6e-32  Score=311.33  Aligned_cols=286  Identities=20%  Similarity=0.347  Sum_probs=250.4

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCcc--ceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRE--RIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL  432 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~  432 (1134)
                      +...|+++.|||+|++ +++++.|+.+++|+..+++  .+.                   .+.+|...|.+++|+||+++
T Consensus       158 ~~~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~-------------------~l~~h~~~v~~~~fs~d~~~  217 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLR-------------------ELSGHTRGVSDVAFSPDGSY  217 (456)
T ss_pred             ccCceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhc-------------------cccccccceeeeEECCCCcE
Confidence            4789999999999996 7899999999999997666  322                   25789999999999999999


Q ss_pred             EEEEeCCCEEEEEEc-cCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEE
Q 001163          433 FGVAYSKHIVHLYTY-HGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY  511 (1134)
Q Consensus       433 las~s~dg~v~iwd~-~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~  511 (1134)
                      +++++.|++|+|||+ ..+..++   ++.+|...|++++|+|+++  ++++|+.|++|+|||+++++++..+.+|...|+
T Consensus       218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is  292 (456)
T KOG0266|consen  218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS  292 (456)
T ss_pred             EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence            999999999999999 4445454   7889999999999999996  899999999999999999999999999999999


Q ss_pred             EEeccccCCccEEEEecCCCcEEEEecCCCC--ceeeecCCCC--CeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC
Q 001163          512 SICPHHKENIQFIFSTATDGKIKAWLYDNLG--SRVDYDAPGH--SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG  587 (1134)
Q Consensus       512 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~  587 (1134)
                      +++|.  +++.+|++++.|+.|++||+.++.  ....+..+..  .++.+.|+|+++++++++.++    .+++||+..+
T Consensus       293 ~~~f~--~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~----~~~~w~l~~~  366 (456)
T KOG0266|consen  293 GLAFS--PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDR----TLKLWDLRSG  366 (456)
T ss_pred             EEEEC--CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCC----eEEEEEccCC
Confidence            99985  555899999999999999999887  3344444433  589999999999999998654    5999999999


Q ss_pred             eeEEEecCCCCC--ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEE--CC
Q 001163          588 AVKRTYHGLGKR--SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVST--ND  663 (1134)
Q Consensus       588 ~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~--~d  663 (1134)
                      ..+..+.+|...  .+.....++.+.++++|+.|+.|++||..++..+..+..|. ...+..+.++|..+++++++  .|
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d  445 (456)
T KOG0266|consen  367 KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIASSSFEGD  445 (456)
T ss_pred             cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeeeecCcCCC
Confidence            999999999875  34445567889999999999999999999999999988765 66889999999999999998  78


Q ss_pred             CcEEEEEcc
Q 001163          664 NGIKILANA  672 (1134)
Q Consensus       664 g~i~iw~~~  672 (1134)
                      +.+++|...
T Consensus       446 ~~~~~w~~~  454 (456)
T KOG0266|consen  446 GLIRLWKYD  454 (456)
T ss_pred             ceEEEecCC
Confidence            999999753

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.5e-32  Score=271.16  Aligned_cols=246  Identities=18%  Similarity=0.292  Sum_probs=228.0

Q ss_pred             ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEE
Q 001163          413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW  492 (1134)
Q Consensus       413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  492 (1134)
                      ++.+|.+.|.|+++.|-+.++++|+.|++|+|||+.+|+...   ++.||...|..+++|+...  |+++++.|+.|+.|
T Consensus       146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw  220 (460)
T KOG0285|consen  146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW  220 (460)
T ss_pred             hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence            578999999999999999999999999999999999998544   7999999999999999888  89999999999999


Q ss_pred             ECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecC
Q 001163          493 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN  572 (1134)
Q Consensus       493 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~  572 (1134)
                      |++..+.++.+.||-..|.|+..+|.-  +.|++|+.|.++++||+++......+.+|...|.++.+.|-...+++++.|
T Consensus       221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D  298 (460)
T KOG0285|consen  221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD  298 (460)
T ss_pred             echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC
Confidence            999999999999999999999998876  689999999999999999999999999999999999999999999999875


Q ss_pred             CCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcC
Q 001163          573 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK  652 (1134)
Q Consensus       573 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp  652 (1134)
                      .    +|++||+..|+...++..|.. .+.+++.+|....+++++.| .|+-|++..|..+..+.+|  ...+++++.+.
T Consensus       299 ~----tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh--~~iintl~~ns  370 (460)
T KOG0285|consen  299 S----TVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGH--NAIINTLSVNS  370 (460)
T ss_pred             c----eEEEeeeccCceeEeeecccc-eeeEEecCCchhhhhccCCc-cceeccCCccchhhccccc--cceeeeeeecc
Confidence            4    599999999999999998887 89999999999999998876 5999999999999987755  77889999988


Q ss_pred             CCcEEEEEECCCcEEEEEccCC
Q 001163          653 EGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       653 ~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      |+ ++++|++.|.+.+||..++
T Consensus       371 D~-v~~~G~dng~~~fwdwksg  391 (460)
T KOG0285|consen  371 DG-VLVSGGDNGSIMFWDWKSG  391 (460)
T ss_pred             Cc-eEEEcCCceEEEEEecCcC
Confidence            76 7778999999999999988

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-30  Score=285.82  Aligned_cols=476  Identities=14%  Similarity=0.218  Sum_probs=334.0

Q ss_pred             cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163          414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD  493 (1134)
Q Consensus       414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd  493 (1134)
                      +...+..|..++|+|...+++++-..|.|++||.+-+.++.   .+..|+++|..++|+|.+.  +++||+.|..|+||+
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn   79 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN   79 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence            44567899999999999999999999999999999988776   6889999999999999999  899999999999999


Q ss_pred             CCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCC
Q 001163          494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK  573 (1134)
Q Consensus       494 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~  573 (1134)
                      ..+.+++.++.||-..|..+.|++.-  .+|+++|.|.+|+||+..+.+++..+++|.+-|.|..|+|....+++++.|.
T Consensus        80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQ  157 (1202)
T KOG0292|consen   80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQ  157 (1202)
T ss_pred             cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccc
Confidence            99999999999999999999998765  7999999999999999999999999999999999999999999999998754


Q ss_pred             CCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCC
Q 001163          574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE  653 (1134)
Q Consensus       574 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~  653 (1134)
                          +|++||+..-+....-.+.-.......   + ++.=+.|+.|-.|          -..+.  +|...|+-++|+|.
T Consensus       158 ----TVRVWDisGLRkk~~~pg~~e~~~~~~---~-~~~dLfg~~DaVV----------K~VLE--GHDRGVNwaAfhpT  217 (1202)
T KOG0292|consen  158 ----TVRVWDISGLRKKNKAPGSLEDQMRGQ---Q-GNSDLFGQTDAVV----------KHVLE--GHDRGVNWAAFHPT  217 (1202)
T ss_pred             ----eEEEEeecchhccCCCCCCchhhhhcc---c-cchhhcCCcCeee----------eeeec--ccccccceEEecCC
Confidence                699999864333222222100000000   0 0000112222211          12334  55778999999999


Q ss_pred             CcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCC
Q 001163          654 GILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDS  733 (1134)
Q Consensus       654 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  733 (1134)
                      -.++++|++|+.|++|..+..                                                           
T Consensus       218 lpliVSG~DDRqVKlWrmnet-----------------------------------------------------------  238 (1202)
T KOG0292|consen  218 LPLIVSGADDRQVKLWRMNET-----------------------------------------------------------  238 (1202)
T ss_pred             cceEEecCCcceeeEEEeccc-----------------------------------------------------------
Confidence            999999999999999987543                                                           


Q ss_pred             ccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcc
Q 001163          734 RNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNST  813 (1134)
Q Consensus       734 ~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~  813 (1134)
                                        +.|+++.      |       .+|.+.|.++.|+|....+++.+.|++|+|||++.+.    
T Consensus       239 ------------------KaWEvDt------c-------rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt----  283 (1202)
T KOG0292|consen  239 ------------------KAWEVDT------C-------RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT----  283 (1202)
T ss_pred             ------------------cceeehh------h-------hcccCCcceEEecCccceeEecCCCccEEEEeccccc----
Confidence                              2354432      1       3599999999999999999999999999999887431    


Q ss_pred             cccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEc
Q 001163          814 GKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFH  893 (1134)
Q Consensus       814 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~s  893 (1134)
                                        .+.. +..  ....-+.++.+|..+++|+|.|+.+.+|.++.-++            +.+.+
T Consensus       284 ------------------~v~t-frr--endRFW~laahP~lNLfAAgHDsGm~VFkleRErp------------a~~v~  330 (1202)
T KOG0292|consen  284 ------------------SVQT-FRR--ENDRFWILAAHPELNLFAAGHDSGMIVFKLERERP------------AYAVN  330 (1202)
T ss_pred             ------------------ceee-eec--cCCeEEEEEecCCcceeeeecCCceEEEEEcccCc------------eEEEc
Confidence                              1111 111  45677899999999999999998888887753222            22333


Q ss_pred             CCCCcEEEEEeCCCcEEEEEcccceE--EEeccCc---cCceEEEEEeeCCCEEEEEe--CCCcEEEEECCCCcccccee
Q 001163          894 PQDNNIIAIGMEDSSIQIYNVRVDEV--KTKLKGH---QKRITGLAFSNTLNVLVSSG--ADSQLCVWSTDGWEKQASKF  966 (1134)
Q Consensus       894 p~~~~~la~g~~dg~i~iwd~~~~~~--~~~l~~h---~~~V~~l~~s~d~~~l~s~s--~Dg~i~iwd~~~~~~~~~~~  966 (1134)
                        ++.++.+-  |..|+-+|+.+.+-  +..++.-   ..++.++.++|....+..++  ..+...++.+..........
T Consensus       331 --~n~LfYvk--d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~  406 (1202)
T KOG0292|consen  331 --GNGLFYVK--DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDG  406 (1202)
T ss_pred             --CCEEEEEc--cceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCc
Confidence              34444443  88999999988543  3444433   36788999999776555443  23444455544321100000


Q ss_pred             eeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEE
Q 001163          967 LTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVG 1045 (1134)
Q Consensus       967 ~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~ 1045 (1134)
                      .....+     .+.. ..|-..+++.+. -++.++.+=++.+........    ...+..|-+-.+|.+|+..  ...|.
T Consensus       407 ~~~~k~-----tG~~-a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~----~~~~~~IF~ag~g~lll~~--~~~v~  474 (1202)
T KOG0292|consen  407 KDVKKG-----TGEG-ALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLL----PESTDDIFYAGTGNLLLRS--PDSVT  474 (1202)
T ss_pred             hhhhcC-----CCCc-eEEEEecceEEEEecCcceEEecccchhhhcccC----cccccceeeccCccEEEEc--CCeEE
Confidence            000000     1112 223333333333 235556665555433222221    1345566666777776643  35699


Q ss_pred             EeecCCCcceeecC
Q 001163         1046 VLTASTLRLRCRIN 1059 (1134)
Q Consensus      1046 vwd~~~~~~~~~~~ 1059 (1134)
                      +||++..+....+.
T Consensus       475 lfdvQq~~~~~si~  488 (1202)
T KOG0292|consen  475 LFDVQQKKKVGSIK  488 (1202)
T ss_pred             EEEeecceEEEEEe
Confidence            99999988877666

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.7e-31  Score=254.89  Aligned_cols=292  Identities=17%  Similarity=0.213  Sum_probs=238.7

Q ss_pred             cccccEEEEEEecC-CceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEc
Q 001163          774 LTAMRVSRLIYTNS-GLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALS  852 (1134)
Q Consensus       774 ~~~~~i~~l~~spd-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s  852 (1134)
                      +|.+++..++|+|- |..|++++.|..|++|+....                   .+-.+... +. .+|...|+.++|+
T Consensus        12 gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~-------------------~s~~ck~v-ld-~~hkrsVRsvAws   70 (312)
T KOG0645|consen   12 GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSG-------------------DSWTCKTV-LD-DGHKRSVRSVAWS   70 (312)
T ss_pred             CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCC-------------------CcEEEEEe-cc-ccchheeeeeeec
Confidence            58889999999999 999999999999999976521                   11111111 22 2599999999999


Q ss_pred             CCCCeEEEee-CCeEEEEEcc--CCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccc---eEEEeccCc
Q 001163          853 KNDSYVMSAS-GGKISLFNMM--TFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD---EVKTKLKGH  926 (1134)
Q Consensus       853 ~dg~~la~~s-dg~i~lwd~~--~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~---~~~~~l~~h  926 (1134)
                      |.|++|++++ |.++.||.-.  ..+++.++.+|..+|.|++|++ +|.+||+++.|++|-||.+..+   +++..++.|
T Consensus        71 p~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~H  149 (312)
T KOG0645|consen   71 PHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEH  149 (312)
T ss_pred             CCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccc
Confidence            9999999999 9999999865  4578999999999999999999 9999999999999999999854   577889999


Q ss_pred             cCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeC
Q 001163          927 QKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEA 1005 (1134)
Q Consensus       927 ~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~ 1005 (1134)
                      ...|..+.|+|...+|+|+|.|.+|++|.-..  .....+.+...+|..   .|-+++|++.|..|++ +.|++++||..
T Consensus       150 tqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~--dddW~c~~tl~g~~~---TVW~~~F~~~G~rl~s~sdD~tv~Iw~~  224 (312)
T KOG0645|consen  150 TQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED--DDDWECVQTLDGHEN---TVWSLAFDNIGSRLVSCSDDGTVSIWRL  224 (312)
T ss_pred             cccccEEEEcCCcceeEEeccCCeEEEEeecC--CCCeeEEEEecCccc---eEEEEEecCCCceEEEecCCcceEeeee
Confidence            99999999999999999999999999998763  224667888888873   7999999999988888 58899999986


Q ss_pred             CCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCC
Q 001163         1006 PKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPN 1085 (1134)
Q Consensus      1006 ~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~ 1085 (1134)
                      .+     .+ ..-|+..+..+.|.  ...|++++.|+.|++|.-..+-.-..+......-..|...|.++  .|+|...+
T Consensus       225 ~~-----~~-~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV--~w~p~~~~  294 (312)
T KOG0645|consen  225 YT-----DL-SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSV--QWNPKVSN  294 (312)
T ss_pred             cc-----Cc-chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceE--EEcCCCCC
Confidence            52     12 23578899999997  56799999999999999775422222221111223477778777  89996689


Q ss_pred             EEEEEecCCcEEEEeCC
Q 001163         1086 QFALGLTDGGVYIIEPL 1102 (1134)
Q Consensus      1086 ~l~s~~~Dg~v~vW~~~ 1102 (1134)
                      +|++|++||.|++|.+.
T Consensus       295 ~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  295 RLASGGDDGIVNFWELE  311 (312)
T ss_pred             ceeecCCCceEEEEEec
Confidence            99999999999999874

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.4e-32  Score=271.16  Aligned_cols=253  Identities=21%  Similarity=0.302  Sum_probs=231.5

Q ss_pred             cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163          414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD  493 (1134)
Q Consensus       414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd  493 (1134)
                      +.+|..+|+.+-|+|+-..+++++.|++|++||..+|+..+   .++||...|..++|+..|+  ++++++.|-.+++||
T Consensus       104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LWd  178 (406)
T KOG0295|consen  104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLWD  178 (406)
T ss_pred             hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhee
Confidence            67899999999999999999999999999999999999755   7999999999999999999  899999999999999


Q ss_pred             CCC-CceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecC
Q 001163          494 AVT-GTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN  572 (1134)
Q Consensus       494 ~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~  572 (1134)
                      ..+ .++++.+.+|...|.+++|.|.+  ++|++++.|.+|+.|+++++-++..+.+|...|..+..+.||..+++++. 
T Consensus       179 ~~~~~~c~ks~~gh~h~vS~V~f~P~g--d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~-  255 (406)
T KOG0295|consen  179 FDTFFRCIKSLIGHEHGVSSVFFLPLG--DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN-  255 (406)
T ss_pred             HHHHHHHHHHhcCcccceeeEEEEecC--CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC-
Confidence            887 67888899999999999998765  79999999999999999999999999999999999999999999999975 


Q ss_pred             CCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCC---------------CCEEEEEeCCCeEEEEEcCCCceeEEEe
Q 001163          573 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTT---------------KNRFLAAGDEFMIKFWDMDNVNLLASID  637 (1134)
Q Consensus       573 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~  637 (1134)
                         +.++++|-..++++...+..|+- ++.+++|.|.               +.++.+++.|++|++||+.++.++.++.
T Consensus       256 ---dqtl~vW~~~t~~~k~~lR~hEh-~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~  331 (406)
T KOG0295|consen  256 ---DQTLRVWVVATKQCKAELREHEH-PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV  331 (406)
T ss_pred             ---CceEEEEEeccchhhhhhhcccc-ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe
Confidence               44699999999988888888876 8889988763               2589999999999999999999999999


Q ss_pred             cCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEe
Q 001163          638 ADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTV  681 (1134)
Q Consensus       638 ~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  681 (1134)
                      +|  ...|..++|+|.|++|+++.+|+++++||+.+. ++++.+
T Consensus       332 gh--dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~-~cmk~~  372 (406)
T KOG0295|consen  332 GH--DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL-QCMKTL  372 (406)
T ss_pred             cc--cceeeeeEEcCCCeEEEEEecCCcEEEEEeccc-eeeecc
Confidence            76  669999999999999999999999999999887 555444

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-31  Score=250.04  Aligned_cols=288  Identities=17%  Similarity=0.237  Sum_probs=246.5

Q ss_pred             CceeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEE
Q 001163          346 PKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRV  424 (1134)
Q Consensus       346 ~~~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  424 (1134)
                      |....+.+. ++++|.++.|+-||+|. .+++.|.+|++|+...|.++++                   +.+|...|..+
T Consensus         6 ptkr~~~l~~~qgaV~avryN~dGnY~-ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVlD~   65 (307)
T KOG0316|consen    6 PTKRLSILDCAQGAVRAVRYNVDGNYC-LTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVLDA   65 (307)
T ss_pred             cchhceeecccccceEEEEEccCCCEE-EEcCCCceEEeecccccceeee-------------------ecCCCceeeec
Confidence            344456666 89999999999999965 6788999999999999998875                   68999999999


Q ss_pred             EEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC--ceeEE
Q 001163          425 MWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG--TKQYI  502 (1134)
Q Consensus       425 ~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~--~~~~~  502 (1134)
                      +.+.|...+++|+.|..|.+||+.+|+..+   .+.+|.+.|+.++|+.+..  .+++|+.|.++++||.++.  ++++.
T Consensus        66 ~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQi  140 (307)
T KOG0316|consen   66 ALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQI  140 (307)
T ss_pred             cccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccch
Confidence            999999999999999999999999999887   6899999999999999988  8999999999999998754  67888


Q ss_pred             ecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEE
Q 001163          503 FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEW  582 (1134)
Q Consensus       503 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w  582 (1134)
                      +......|.++.+..    ..|++|+.||++|.||++.+.....+  -+++|++++|++|++..+.++.+.    .+++.
T Consensus       141 ldea~D~V~Si~v~~----heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l~s----tlrLl  210 (307)
T KOG0316|consen  141 LDEAKDGVSSIDVAE----HEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSLDS----TLRLL  210 (307)
T ss_pred             hhhhcCceeEEEecc----cEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeeccc----eeeec
Confidence            988889999997643    67999999999999999876654443  356899999999999999988754    59999


Q ss_pred             eCCCCeeEEEecCCCCCce-EEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEE
Q 001163          583 NESEGAVKRTYHGLGKRSV-GVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVST  661 (1134)
Q Consensus       583 d~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~  661 (1134)
                      |-.+|+++..+.+|.+... ..++++.....+++|++||.|++||+.....+..+..++. ..+..++++|.-..++++.
T Consensus       211 Dk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~-v~v~dl~~hp~~~~f~~A~  289 (307)
T KOG0316|consen  211 DKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVST-VIVTDLSCHPTMDDFITAT  289 (307)
T ss_pred             ccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCc-eeEEeeecccCccceeEec
Confidence            9999999999999976332 3467777788999999999999999999999998876532 2478999999877777665


Q ss_pred             CCCcEEEEE
Q 001163          662 NDNGIKILA  670 (1134)
Q Consensus       662 ~dg~i~iw~  670 (1134)
                      .. .+..|.
T Consensus       290 ~~-~~~~~~  297 (307)
T KOG0316|consen  290 GH-GDLFWY  297 (307)
T ss_pred             CC-ceecee
Confidence            43 455554

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.8e-31  Score=304.01  Aligned_cols=288  Identities=27%  Similarity=0.388  Sum_probs=246.6

Q ss_pred             ccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC
Q 001163          775 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN  854 (1134)
Q Consensus       775 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d  854 (1134)
                      +...|.++.|+++|+.+++++.++.+++|+.....                +     .....+.  +|...|..++|+||
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~----------------~-----~~~~~l~--~h~~~v~~~~fs~d  214 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIK----------------S-----NLLRELS--GHTRGVSDVAFSPD  214 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCCcEEEeeccccc----------------c-----hhhcccc--ccccceeeeEECCC
Confidence            46789999999999999999999999999763211                0     1111223  39999999999999


Q ss_pred             CCeEEEee-CCeEEEEEc-cCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEE
Q 001163          855 DSYVMSAS-GGKISLFNM-MTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITG  932 (1134)
Q Consensus       855 g~~la~~s-dg~i~lwd~-~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~  932 (1134)
                      ++++++++ |++|+|||+ ..+.+++++++|...|++++|+| +++++++|+.|++|+|||+.+++++..+.+|.+.|++
T Consensus       215 ~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~  293 (456)
T KOG0266|consen  215 GSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISG  293 (456)
T ss_pred             CcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEE
Confidence            99999999 899999999 66799999999999999999999 6799999999999999999999999999999999999


Q ss_pred             EEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-eeceEEEEeCCCcccc
Q 001163          933 LAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLECL 1011 (1134)
Q Consensus       933 l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~iwd~~~~~~~ 1011 (1134)
                      ++|++++.+|++++.|+.|++||+.++...   +.....++.... .+.++.|+|++++++++ .|+.+++||+..+.+.
T Consensus       294 ~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~  369 (456)
T KOG0266|consen  294 LAFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV  369 (456)
T ss_pred             EEECCCCCEEEEcCCCccEEEEECCCCcee---eeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcce
Confidence            999999999999999999999999997743   344455555422 68999999999999995 7779999999999999


Q ss_pred             eeeccCCCcc---CEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCC-CCCceeEEEEecCCCCCEE
Q 001163         1012 KQFVPREASG---PITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNP-SLRVYPLVIAGNPTDPNQF 1087 (1134)
Q Consensus      1012 ~~~~~~~h~~---~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~p~~~~~l 1087 (1134)
                      ..+.  +|..   .+.+..++++|.++++|+.|+.|++||..++..+.++.       +| ...+..+  +++| ..+++
T Consensus       370 ~~~~--~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~-------~h~~~~~~~~--~~~~-~~~~~  437 (456)
T KOG0266|consen  370 GTYT--GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE-------GHSKAAVSDL--SSHP-TENLI  437 (456)
T ss_pred             eeec--ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc-------CCCCCceecc--ccCC-CcCee
Confidence            9988  5544   45566678899999999999999999999988887777       56 4555555  7888 68899


Q ss_pred             EEEe--cCCcEEEEeCC
Q 001163         1088 ALGL--TDGGVYIIEPL 1102 (1134)
Q Consensus      1088 ~s~~--~Dg~v~vW~~~ 1102 (1134)
                      ++++  .|+.+++|...
T Consensus       438 ~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  438 ASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             eecCcCCCceEEEecCC
Confidence            9988  79999999764

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.1e-32  Score=283.83  Aligned_cols=293  Identities=18%  Similarity=0.270  Sum_probs=246.7

Q ss_pred             CceeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCC-ccceeeeceeeeeccccCccccccccccCCCCEEE
Q 001163          346 PKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGS-RERIAVKSFKVWELGACSMPLQASLSSDYTASVNR  423 (1134)
Q Consensus       346 ~~~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  423 (1134)
                      |+..++++. |...|+++.|.|-.-+|+++|+.|+.|+||++.. ++++++                   +.||..+|.+
T Consensus       203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~Vrd  263 (503)
T KOG0282|consen  203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKPVRD  263 (503)
T ss_pred             cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehh-------------------hhcchhhhhh
Confidence            567777776 9999999999995445889999999999999977 666654                   7899999999


Q ss_pred             EEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEe
Q 001163          424 VMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF  503 (1134)
Q Consensus       424 l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  503 (1134)
                      ++|+++|..++++|.|+.|++||+++|+++..+   . -...++|+.|.||+.+ .+++|+.|+.|+.||+++++.++++
T Consensus       264 ~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f---~-~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvqeY  338 (503)
T KOG0282|consen  264 ASFNNCGTSFLSASFDRFLKLWDTETGQVLSRF---H-LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQEY  338 (503)
T ss_pred             hhccccCCeeeeeecceeeeeeccccceEEEEE---e-cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHHHH
Confidence            999999999999999999999999999977633   1 3346899999999955 7899999999999999999999999


Q ss_pred             cCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceee-ecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEE
Q 001163          504 EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD-YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEW  582 (1134)
Q Consensus       504 ~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w  582 (1134)
                      ..|-+.|..+.|.+  +|..+++.+.|+++++|+.+..-.... .....+...++..+|++++++.-+.+    ..|.++
T Consensus       339 d~hLg~i~~i~F~~--~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~d----N~i~if  412 (503)
T KOG0282|consen  339 DRHLGAILDITFVD--EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMD----NYIAIF  412 (503)
T ss_pred             HhhhhheeeeEEcc--CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccC----ceEEEE
Confidence            99999999999854  458999999999999999886544332 23344577889999999999987654    358888


Q ss_pred             eCCCC---eeEEEecCCCCC-ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCC-CcEE
Q 001163          583 NESEG---AVKRTYHGLGKR-SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE-GILL  657 (1134)
Q Consensus       583 d~~~~---~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~-~~~l  657 (1134)
                      .+...   ...+.|.+|... .-..+.|||||.+|++|+.||.+.+||..+-+++..+..|  ...+..+.|+|. ...+
T Consensus       413 s~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah--~~~ci~v~wHP~e~Skv  490 (503)
T KOG0282|consen  413 STVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH--DQPCIGVDWHPVEPSKV  490 (503)
T ss_pred             ecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC--CcceEEEEecCCCccee
Confidence            75433   334466777542 3456899999999999999999999999999999999876  668999999994 5789


Q ss_pred             EEEECCCcEEEEE
Q 001163          658 AVSTNDNGIKILA  670 (1134)
Q Consensus       658 ~~~~~dg~i~iw~  670 (1134)
                      |+++.||.|++|+
T Consensus       491 at~~w~G~Ikiwd  503 (503)
T KOG0282|consen  491 ATCGWDGLIKIWD  503 (503)
T ss_pred             EecccCceeEecC
Confidence            9999999999996

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=9.8e-33  Score=270.92  Aligned_cols=274  Identities=22%  Similarity=0.346  Sum_probs=233.4

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la  434 (1134)
                      ...+|+|+.+..+   .+++|..|.+|+|||..+.+.+.                   .+.||++.|.|+.|  |.+.++
T Consensus       196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~-------------------~L~GHtGSVLCLqy--d~rvii  251 (499)
T KOG0281|consen  196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLK-------------------ILTGHTGSVLCLQY--DERVIV  251 (499)
T ss_pred             cCCceEEEEecch---hhhcccccCceEEeccccHHHHH-------------------hhhcCCCcEEeeec--cceEEE
Confidence            4578999999654   46899999999999998877665                   38999999999999  566999


Q ss_pred             EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCce---eEEecCCCcCEE
Q 001163          435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK---QYIFEGHESPVY  511 (1134)
Q Consensus       435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~---~~~~~~h~~~v~  511 (1134)
                      +|+.|.+|+|||+++|++++   ++-+|...|..+.|+.  .  +++|+|.|.++.+||+.....   .+.+.||.+.|+
T Consensus       252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~n--g--~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN  324 (499)
T KOG0281|consen  252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSN--G--YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN  324 (499)
T ss_pred             ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeC--C--EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence            99999999999999999877   6888999999999983  3  799999999999999987653   356789999999


Q ss_pred             EEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEE
Q 001163          512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKR  591 (1134)
Q Consensus       512 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~  591 (1134)
                      .+.|+  .  +++++++.|.+|++|++.+.+....+.+|...|.++.+  .|+++++|+.    +.+|++||+..|.+++
T Consensus       325 vVdfd--~--kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLR  394 (499)
T KOG0281|consen  325 VVDFD--D--KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR  394 (499)
T ss_pred             eeccc--c--ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHH
Confidence            99873  3  69999999999999999999999999999888888776  6788888865    4569999999999999


Q ss_pred             EecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEE-------EecCCCCCCcceEEEcCCCcEEEEEECCC
Q 001163          592 TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLAS-------IDADGGLQASPCIRFNKEGILLAVSTNDN  664 (1134)
Q Consensus       592 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------~~~~~~~~~v~~v~~sp~~~~l~~~~~dg  664 (1134)
                      .+.||+. -|.++.|.  .+.+++|+.||+|++||+..+.....       .....+.+.|..+.|.  ...+++++.|.
T Consensus       395 vLeGHEe-LvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHdd  469 (499)
T KOG0281|consen  395 VLEGHEE-LVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDD  469 (499)
T ss_pred             HHhchHH-hhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCC
Confidence            9999997 89999984  67899999999999999987653321       1122346678888884  66899999999


Q ss_pred             cEEEEEccCC
Q 001163          665 GIKILANADG  674 (1134)
Q Consensus       665 ~i~iw~~~~~  674 (1134)
                      +|.|||+.++
T Consensus       470 tILiWdFl~~  479 (499)
T KOG0281|consen  470 TILIWDFLNG  479 (499)
T ss_pred             eEEEEEcCCC
Confidence            9999999877

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-31  Score=270.04  Aligned_cols=259  Identities=16%  Similarity=0.205  Sum_probs=215.9

Q ss_pred             ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEE
Q 001163          413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW  492 (1134)
Q Consensus       413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  492 (1134)
                      ++..|++.|+-+.||++|+|||+++.|.+..||++.....++..+++.+|..+|..+.||||++  +|++|+.|..+.+|
T Consensus       219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw  296 (519)
T KOG0293|consen  219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW  296 (519)
T ss_pred             hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence            4788999999999999999999999999999999987766777778999999999999999999  89999999999999


Q ss_pred             ECCCCceeEEec-CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecC-CCCCeeEEEECcCCCEEEEEe
Q 001163          493 DAVTGTKQYIFE-GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA-PGHSSTMMAYSADGARLFSCG  570 (1134)
Q Consensus       493 d~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~  570 (1134)
                      |+.+|.+...+. +|...+.+++|.|  ||..+++|+.|+++..||++... .....+ ....|.+++.++||+++++.+
T Consensus       297 Dv~tgd~~~~y~~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~  373 (519)
T KOG0293|consen  297 DVDTGDLRHLYPSGLGFSVSSCAWCP--DGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVT  373 (519)
T ss_pred             cCCcchhhhhcccCcCCCcceeEEcc--CCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEe
Confidence            999999988775 3567899999965  45889999999999999987433 222222 234699999999999999987


Q ss_pred             cCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEE
Q 001163          571 TNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRF  650 (1134)
Q Consensus       571 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  650 (1134)
                      .|.    .|++++.++.........++  ++++++.+.+++++++.-.+..+.+||++..+.+..+.+|.....+..-+|
T Consensus       374 ~d~----~i~l~~~e~~~dr~lise~~--~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCF  447 (519)
T KOG0293|consen  374 VDK----KIRLYNREARVDRGLISEEQ--PITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCF  447 (519)
T ss_pred             ccc----ceeeechhhhhhhccccccC--ceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEecc
Confidence            543    59999988776665444443  899999999999999998999999999998888888887755545555566


Q ss_pred             cC-CCcEEEEEECCCcEEEEEccCCceeEEEecc
Q 001163          651 NK-EGILLAVSTNDNGIKILANADGIRLLRTVES  683 (1134)
Q Consensus       651 sp-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~  683 (1134)
                      .- +..++++|++|+.|+||+..++ .++..+.|
T Consensus       448 gg~~~~fiaSGSED~kvyIWhr~sg-kll~~LsG  480 (519)
T KOG0293|consen  448 GGGNDKFIASGSEDSKVYIWHRISG-KLLAVLSG  480 (519)
T ss_pred             CCCCcceEEecCCCceEEEEEccCC-ceeEeecC
Confidence            65 5589999999999999998887 45544443

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=100.00  E-value=4.2e-30  Score=271.01  Aligned_cols=685  Identities=14%  Similarity=0.145  Sum_probs=369.1

Q ss_pred             eCCCCCCcccccCCCCC--ceeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccC
Q 001163          330 YTPQSLGQSSYSTDDLP--KTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACS  406 (1134)
Q Consensus       330 ~s~~~~~l~~~~~d~~~--~~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  406 (1134)
                      +-..|..+...-.+...  .+.+-.+. |.+.|+.+.|||-...|||+||.|..|+||.+..|.....            
T Consensus        50 ~e~~G~~lgvlPl~~~Gr~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~L------------  117 (1012)
T KOG1445|consen   50 IEGEGGKLGVLPLTAKGRRTRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKL------------  117 (1012)
T ss_pred             ecCCCceEEEEeccccCccccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCccccc------------
Confidence            33344444444333322  22333444 9999999999998777999999999999999985532210            


Q ss_pred             ccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC
Q 001163          407 MPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED  486 (1134)
Q Consensus       407 ~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d  486 (1134)
                       ......+.+..-.|-|+.|+|...-|...+..|+++|||+.+++.+.   .+.+|...|.++.|+.||+  +|++.+.|
T Consensus       118 -Sape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKd  191 (1012)
T KOG1445|consen  118 -SAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKD  191 (1012)
T ss_pred             -CCcceeecCCceEEEEeecccCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCC
Confidence             01111345566788999999976666666678899999999988665   7899999999999999999  89999999


Q ss_pred             CeEEEEECCC-CceeEEecCCCcCE-EEEeccccCCccEEEEecCC----CcEEEEecCCCCce-eeecCC-CCCeeEEE
Q 001163          487 RVIKVWDAVT-GTKQYIFEGHESPV-YSICPHHKENIQFIFSTATD----GKIKAWLYDNLGSR-VDYDAP-GHSSTMMA  558 (1134)
Q Consensus       487 ~~i~iwd~~~-~~~~~~~~~h~~~v-~~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~-~~~~~~-~~~v~~~~  558 (1134)
                      +.|+|+|.+. ++.++...+|.+.- ..+.|  .++-..|++.+.+    ..|++||.+..... ..++.. ...|.---
T Consensus       192 kqirifDPRa~~~piQ~te~H~~~rdsRv~w--~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl  269 (1012)
T KOG1445|consen  192 KQIRIFDPRASMEPIQTTEGHGGMRDSRVLW--AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPL  269 (1012)
T ss_pred             cceEEeCCccCCCccccccccccchhheeee--ccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeee
Confidence            9999999874 57788888887642 12333  3443456665544    56899998764432 222222 22455556


Q ss_pred             ECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEE--EecCCCCCceEEEEEcCCCCEEEEEeC------------------
Q 001163          559 YSADGARLFSCGTNKEGESYLVEWNESEGAVKR--TYHGLGKRSVGVVQFDTTKNRFLAAGD------------------  618 (1134)
Q Consensus       559 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------  618 (1134)
                      |.||.++|+.++   .|+..+..+.+...++..  .+...-.......++-|....-+..++                  
T Consensus       270 ~DpDt~llfLaG---KG~~~l~~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~  346 (1012)
T KOG1445|consen  270 YDPDTRLLFLAG---KGTNKLFMLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYI  346 (1012)
T ss_pred             ecCCCceEEEec---CCcceEEEEEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccc
Confidence            899999888876   456678888776543211  111000000011111111110000000                  


Q ss_pred             ---------------------CC-eEEEEEcCCCceeEEEec------CCC----------------CCCcceEEEcCCC
Q 001163          619 ---------------------EF-MIKFWDMDNVNLLASIDA------DGG----------------LQASPCIRFNKEG  654 (1134)
Q Consensus       619 ---------------------dg-~i~iwd~~~~~~~~~~~~------~~~----------------~~~v~~v~~sp~~  654 (1134)
                                           -+ .---|=-.+.+.+..+..      |+.                ...|......|..
T Consensus       347 VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~  426 (1012)
T KOG1445|consen  347 VPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRP  426 (1012)
T ss_pred             cchhhhhhhhhhhCccccCCccCcCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCc
Confidence                                 00 000111111111111110      000                0000000000000


Q ss_pred             -cEEEEEEC-------------CCcEEEEEccCCce---------eEEEeccCcccccccchhhhhcccc-ccccccccc
Q 001163          655 -ILLAVSTN-------------DNGIKILANADGIR---------LLRTVESRTFDASRVASAAIVKAPA-IGTFGSANA  710 (1134)
Q Consensus       655 -~~l~~~~~-------------dg~i~iw~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  710 (1134)
                       .-.-+.++             ...++-.+....+.         ....-++.+..+..+....+..-+. -.++.....
T Consensus       427 ~~n~~~~~~~~Pd~~~qpaV~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s  506 (1012)
T KOG1445|consen  427 MSNNNSSSNNVPDVQEQPAVPKKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVS  506 (1012)
T ss_pred             cccccccccCCCccccCCCcCcchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccc
Confidence             00000000             00000000000000         0000000000000000000000000 000000000


Q ss_pred             ccc---cCcCCCCcccccccCC----CCCCccCcccccccccccccccceeeecccCCcc------ceeccccCCccccc
Q 001163          711 NVG---TSLGERTAPAAAMVGM----SNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPS------QCRSLRLPDNLTAM  777 (1134)
Q Consensus       711 ~~s---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~------~~~~~~~~~~~~~~  777 (1134)
                      ..+   |...+. .|-..-..+    +...+........-..+--|.+.-|.-.......      ..+.+....   .+
T Consensus       507 ~~s~~~P~~~ks-vPe~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~---Pg  582 (1012)
T KOG1445|consen  507 TPSVVGPAFGKS-VPEQPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRL---PG  582 (1012)
T ss_pred             cccccCcccccc-CCCCCCcccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccC---CC
Confidence            001   111100 000000000    0000000000000000000111111111111100      001110000   01


Q ss_pred             cEEEEEEecCCceeee--eccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcC-C
Q 001163          778 RVSRLIYTNSGLAILA--LASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSK-N  854 (1134)
Q Consensus       778 ~i~~l~~spdg~~l~~--~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~-d  854 (1134)
                        .+=-|+.+..++++  .+..|.|.||+++....-+++.+                     ++......|+.+.|.| |
T Consensus       583 --EsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~---------------------p~l~Ngt~vtDl~WdPFD  639 (1012)
T KOG1445|consen  583 --ESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVM---------------------PGLFNGTLVTDLHWDPFD  639 (1012)
T ss_pred             --ccCceeeccceEEEEecCCCceEEEEEcCCCCCCCcccc---------------------cccccCceeeecccCCCC
Confidence              11123444444443  45578999999886655444432                     2222567889999998 5


Q ss_pred             CCeEEEee-CCeEEEEEccCC-------eEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCc
Q 001163          855 DSYVMSAS-GGKISLFNMMTF-------KTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGH  926 (1134)
Q Consensus       855 g~~la~~s-dg~i~lwd~~~~-------~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h  926 (1134)
                      ...||++. ||.|++|.+..+       ..-..+..|...|+++.|+|--...|++++.|-+|++||+.+++....+.+|
T Consensus       640 ~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gH  719 (1012)
T KOG1445|consen  640 DERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGH  719 (1012)
T ss_pred             hHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccC
Confidence            67788887 899999998643       3445677899999999999976779999999999999999999999999999


Q ss_pred             cCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-E----eeceEE
Q 001163          927 QKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-V----HETQIA 1001 (1134)
Q Consensus       927 ~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~----~d~~i~ 1001 (1134)
                      .+.|.+++|||||+.+||.+.||+|++|+..+++      ..+.++....+..-..+.|.-||+++++ |    ++++|.
T Consensus       720 tdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e------~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~  793 (1012)
T KOG1445|consen  720 TDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE------QPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQ  793 (1012)
T ss_pred             cCceeEEEECCCCcceeeeecCceEEEeCCCCCC------CccccCCCCccCcceeEEEEecCcEEEEecccccchhhhh
Confidence            9999999999999999999999999999988755      2233333333344567889999999888 4    457899


Q ss_pred             EEeCCCccc--ceeeccCCCccCEEEEEEccCCCE-EEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCC
Q 001163         1002 IYEAPKLEC--LKQFVPREASGPITHATYSCDSQS-IYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLR 1071 (1134)
Q Consensus      1002 iwd~~~~~~--~~~~~~~~h~~~v~~~~~s~dg~~-l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~ 1071 (1134)
                      +||..+...  +....... ...+.--.+.+|... +++|-.|..|.+|++.-......-......|.+|.+-
T Consensus       794 ~Y~Aq~l~~~pl~t~~lDv-aps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp~~hqGl  865 (1012)
T KOG1445|consen  794 MYDAQTLDLRPLYTQVLDV-APSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSPVGHQGL  865 (1012)
T ss_pred             hhhhhhccCCcceeeeecc-cCccccccccCCCceEEEecCCCceEEEEEecCCCceeeecccccCCCcccce
Confidence            999876542  22221110 122222334556665 6788889999999987655532211222334455554

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.1e-32  Score=275.32  Aligned_cols=285  Identities=15%  Similarity=0.256  Sum_probs=246.7

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCC
Q 001163          417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT  496 (1134)
Q Consensus       417 h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~  496 (1134)
                      -+..|..+.|.|+|+.|++|+..|.+.+|+..+   +.-...++.|+.+|+++.|+++|.  +++||+.+|.|++|+..-
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~---fnFEtilQaHDs~Vr~m~ws~~g~--wmiSgD~gG~iKyWqpnm  169 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS---FNFETILQAHDSPVRTMKWSHNGT--WMISGDKGGMIKYWQPNM  169 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCce---eeHHHHhhhhcccceeEEEccCCC--EEEEcCCCceEEecccch
Confidence            345899999999999999999999999999754   222234778999999999999999  899999999999999544


Q ss_pred             CceeEEecCC-CcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCC
Q 001163          497 GTKQYIFEGH-ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG  575 (1134)
Q Consensus       497 ~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~  575 (1134)
                       ..++.+.+| ...|.+++|++..  ..+++++.||+|+|||....+....+.+|+-.|.++.|+|.-..+++++.|   
T Consensus       170 -nnVk~~~ahh~eaIRdlafSpnD--skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskD---  243 (464)
T KOG0284|consen  170 -NNVKIIQAHHAEAIRDLAFSPND--SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKD---  243 (464)
T ss_pred             -hhhHHhhHhhhhhhheeccCCCC--ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCC---
Confidence             445555555 5999999998743  789999999999999999988888899999999999999999999999754   


Q ss_pred             CeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcC-CC
Q 001163          576 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK-EG  654 (1134)
Q Consensus       576 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~~  654 (1134)
                       ..|++||.+++.++.++.+|.+ .|..+.|++++++|+++|.|..++++|+++.+.+.++.+|  ...|.++.|+| ..
T Consensus       244 -nlVKlWDprSg~cl~tlh~HKn-tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~H--kkdv~~~~WhP~~~  319 (464)
T KOG0284|consen  244 -NLVKLWDPRSGSCLATLHGHKN-TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGH--KKDVTSLTWHPLNE  319 (464)
T ss_pred             -ceeEeecCCCcchhhhhhhccc-eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcc--hhhheeeccccccc
Confidence             3799999999999999999998 8999999999999999999999999999999988888866  77899999999 66


Q ss_pred             cEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCc
Q 001163          655 ILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSR  734 (1134)
Q Consensus       655 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  734 (1134)
                      .+|.+|+.||.|..|.+.....                                                          
T Consensus       320 ~lftsgg~Dgsvvh~~v~~~~p----------------------------------------------------------  341 (464)
T KOG0284|consen  320 SLFTSGGSDGSVVHWVVGLEEP----------------------------------------------------------  341 (464)
T ss_pred             cceeeccCCCceEEEecccccc----------------------------------------------------------
Confidence            7899999999999998752200                                                          


Q ss_pred             cCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCC
Q 001163          735 NFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPR  807 (1134)
Q Consensus       735 ~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~  807 (1134)
                                                       +.....+|...|.+++|+|=|..|++++.|.++++|....
T Consensus       342 ---------------------------------~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r  381 (464)
T KOG0284|consen  342 ---------------------------------LGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR  381 (464)
T ss_pred             ---------------------------------ccCCCcccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence                                             0011124889999999999999999999999999997653

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1e-27  Score=257.34  Aligned_cols=552  Identities=13%  Similarity=0.136  Sum_probs=378.7

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la  434 (1134)
                      ..++|+++|||.+.+. ||.+-.||.|.||++..+=....                 .+..+-...|-+++|+ ++..|.
T Consensus        24 ~Ps~I~slA~s~kS~~-lAvsRt~g~IEiwN~~~~w~~~~-----------------vi~g~~drsIE~L~W~-e~~RLF   84 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQ-LAVSRTDGNIEIWNLSNNWFLEP-----------------VIHGPEDRSIESLAWA-EGGRLF   84 (691)
T ss_pred             eccceEEEEEeccCCc-eeeeccCCcEEEEccCCCceeeE-----------------EEecCCCCceeeEEEc-cCCeEE
Confidence            4678999999999885 68999999999999987643221                 0123455789999999 667788


Q ss_pred             EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeE--EecCCCcCEEE
Q 001163          435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY--IFEGHESPVYS  512 (1134)
Q Consensus       435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~--~~~~h~~~v~~  512 (1134)
                      +.+.+|.|.-||+.+++...   .+....+.|++++.+|.+.  .++.|+.||.+...+...++..+  .|....++|.+
T Consensus        85 S~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLs  159 (691)
T KOG2048|consen   85 SSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLS  159 (691)
T ss_pred             eecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccceEEE
Confidence            88999999999999987655   5677888999999999998  68999999988888888887664  34456689999


Q ss_pred             EeccccCCccEEEEecCCCcEEEEecCCCCceeeecC--------CCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeC
Q 001163          513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA--------PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE  584 (1134)
Q Consensus       513 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--------~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~  584 (1134)
                      +.|++  ++..+++|+.||.|++||...+........        ...-|.++.|-.++ .|++|    |..+.|.+||.
T Consensus       160 lsw~~--~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sg----DS~G~V~FWd~  232 (691)
T KOG2048|consen  160 LSWNP--TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASG----DSAGTVTFWDS  232 (691)
T ss_pred             EEecC--CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEe----cCCceEEEEcc
Confidence            99865  447899999999999999988776652221        11246677777555 45555    45678999999


Q ss_pred             CCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce--eEEEecCCCCCCcceEEEcCCCcEEEEEEC
Q 001163          585 SEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL--LASIDADGGLQASPCIRFNKEGILLAVSTN  662 (1134)
Q Consensus       585 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~  662 (1134)
                      ..+.+++.+..|.. .|.+++..+++++++++|.|+.|.-+...++..  +.......|...|.+++..++  .+++|+.
T Consensus       233 ~~gTLiqS~~~h~a-dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~  309 (691)
T KOG2048|consen  233 IFGTLIQSHSCHDA-DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGR  309 (691)
T ss_pred             cCcchhhhhhhhhc-ceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecce
Confidence            99999999999887 899999999999999999999999988776543  333333344557899998877  8999999


Q ss_pred             CCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccc
Q 001163          663 DNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPK  742 (1134)
Q Consensus       663 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  742 (1134)
                      |.++.+-.....     ....|.....             .                  |       ..+.......+.+
T Consensus       310 d~~l~i~~s~~~-----~~~~h~~~~~-------------~------------------p-------~~~~v~~a~~~~L  346 (691)
T KOG2048|consen  310 DFTLAICSSREF-----KNMDHRQKNL-------------F------------------P-------ASDRVSVAPENRL  346 (691)
T ss_pred             eeEEEEcccccc-----Cchhhhcccc-------------c------------------c-------ccceeecCccceE
Confidence            998887543321     0111110000             0                  0       0000011112233


Q ss_pred             cccccccccceeeecccCCccc---eeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccC
Q 001163          743 IADEAVEKSRIWKLTEITEPSQ---CRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTN  819 (1134)
Q Consensus       743 ~~~~~d~~i~iw~~~~~~~~~~---~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~  819 (1134)
                      ..--.+..+.+|.+......+.   ...+.+. ......|.+.+.||+|++++.+.-. ..+||.++...     ..   
T Consensus       347 ~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~-~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~-----~v---  416 (691)
T KOG2048|consen  347 LVLWKAHGVDLWRLGSVILQGEYNYIHLLKLF-TKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDP-----NV---  416 (691)
T ss_pred             EEEeccccccceeccCcccccccChhhheeee-cCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCc-----ce---
Confidence            3444445677777765422211   1111111 2245789999999999988776643 56777766321     00   


Q ss_pred             CCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee--CCeEEEEEccCCe--EEEEec--CCCCCeEEEEEc
Q 001163          820 QAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFK--TMTTFM--PPPPAATFLAFH  893 (1134)
Q Consensus       820 ~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s--dg~i~lwd~~~~~--~~~~~~--~~~~~v~~l~~s  893 (1134)
                         ++-.++       ..+.  ..-....+.|+-|+..++..+  ...+.++++++..  .+..+.  +....|..++.|
T Consensus       417 ---k~~~v~-------~~~~--~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~S  484 (691)
T KOG2048|consen  417 ---KVINVD-------DVPL--ALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVS  484 (691)
T ss_pred             ---eEEEec-------cchh--hhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEc
Confidence               000000       0110  234567888998888777776  4678888876543  222222  234679999999


Q ss_pred             CCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEe-eCCCEEEEEeCCCcEEEEECCCCccccceeeee---
Q 001163          894 PQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFS-NTLNVLVSSGADSQLCVWSTDGWEKQASKFLTI---  969 (1134)
Q Consensus       894 p~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s-~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~---  969 (1134)
                      | +|+++|+.+.+|.|.+|++.+++.......-...|++++|+ .+...|+.+..|+++.-||++..+...+.....   
T Consensus       485 s-dG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~nt~nl  563 (691)
T KOG2048|consen  485 S-DGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNNTRNL  563 (691)
T ss_pred             C-CCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhcccccc
Confidence            9 99999999999999999999887654443445789999999 566789999999999999995544333222211   


Q ss_pred             cCCCCCCCCCceEEEEcCCCCEEEEE-eeceEEEEeCC
Q 001163          970 PNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAP 1006 (1134)
Q Consensus       970 ~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~iwd~~ 1006 (1134)
                      +.........+..+.|+|.....+.. ..+-+.+.|..
T Consensus       564 pk~~~~l~~~~~gisfd~~n~s~~~~~~a~w~~~id~~  601 (691)
T KOG2048|consen  564 PKEPKTLIPGIPGISFDPKNSSRFIVYDAHWSCLIDFS  601 (691)
T ss_pred             ccChhhcCCCCceEEeCCCCccEEEEEcCcEEEEEecC
Confidence            11111122567888898877665554 44556666554

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=2.2e-29  Score=276.78  Aligned_cols=283  Identities=24%  Similarity=0.410  Sum_probs=249.6

Q ss_pred             ecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001163          354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF  433 (1134)
Q Consensus       354 ~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l  433 (1134)
                      +|.+.|++++|+|+++ ++++|+.||.|.+||+.+++....                   +.+|...+.++.|+|+++++
T Consensus         7 ~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~~~~l   66 (289)
T cd00200           7 GHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASADGTYL   66 (289)
T ss_pred             ccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCCCCEE
Confidence            4889999999999998 567888999999999988764432                   46788999999999999999


Q ss_pred             EEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEE
Q 001163          434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI  513 (1134)
Q Consensus       434 as~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  513 (1134)
                      ++++.||.|++||+.+++...   .+..|...|.++.|+++++  ++++++.|+.|++||+.+++....+..|...|.++
T Consensus        67 ~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~  141 (289)
T cd00200          67 ASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV  141 (289)
T ss_pred             EEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEE
Confidence            999999999999999876554   5778999999999999977  78888889999999999999999999999999999


Q ss_pred             eccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEe
Q 001163          514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTY  593 (1134)
Q Consensus       514 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~  593 (1134)
                      +|++.  +.++++++.|+.|++||+...+....+..+...+.++.|+|+++.+++++.    ++.+.+||+.+++.+..+
T Consensus       142 ~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~  215 (289)
T cd00200         142 AFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKCLGTL  215 (289)
T ss_pred             EEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCceecch
Confidence            99765  478888888999999999887777777777779999999999999988875    345999999999988888


Q ss_pred             cCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEE
Q 001163          594 HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILA  670 (1134)
Q Consensus       594 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~  670 (1134)
                      ..+.. .+.++.|++++.++++++.+|.|++||+.+++....+..+  ...+.+++|+|++.++++++.||.+++|+
T Consensus       216 ~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         216 RGHEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH--TNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             hhcCC-ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc--CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            77766 8999999999888888888999999999998888888744  56899999999999999999999999995

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=2.8e-31  Score=260.76  Aligned_cols=232  Identities=16%  Similarity=0.319  Sum_probs=203.6

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCC
Q 001163          417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT  496 (1134)
Q Consensus       417 h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~  496 (1134)
                      ....|+|+.+  |...+++|..|.+|+|||.++-.+++   .+.||++.|.|+.|.  .+  .+++||.|.+|+|||+.+
T Consensus       196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~t  266 (499)
T KOG0281|consen  196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNT  266 (499)
T ss_pred             cCCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccC
Confidence            3458999998  67889999999999999999977666   689999999999985  45  899999999999999999


Q ss_pred             CceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCce---eeecCCCCCeeEEEECcCCCEEEEEecCC
Q 001163          497 GTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR---VDYDAPGHSSTMMAYSADGARLFSCGTNK  573 (1134)
Q Consensus       497 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~~~  573 (1134)
                      |+++.++-+|...|..+.|+.    .++++++.|.++.+||+......   ..+.+|...|..+.|+  .+++++++.  
T Consensus       267 ge~l~tlihHceaVLhlrf~n----g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASg--  338 (499)
T KOG0281|consen  267 GEPLNTLIHHCEAVLHLRFSN----GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASG--  338 (499)
T ss_pred             CchhhHHhhhcceeEEEEEeC----CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecC--
Confidence            999999999999999999842    58999999999999999876533   3467788889988885  458998865  


Q ss_pred             CCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCC
Q 001163          574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE  653 (1134)
Q Consensus       574 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~  653 (1134)
                        +.+|++|++.+++.++++.+|.. .|.++.+  .++++++|+.|.+|++||+..|.++..+++|  ..-|.|+.|.  
T Consensus       339 --DRTikvW~~st~efvRtl~gHkR-GIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGH--EeLvRciRFd--  409 (499)
T KOG0281|consen  339 --DRTIKVWSTSTCEFVRTLNGHKR-GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGH--EELVRCIRFD--  409 (499)
T ss_pred             --CceEEEEeccceeeehhhhcccc-cceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhch--HHhhhheeec--
Confidence              55799999999999999999987 6766655  5789999999999999999999999999866  6789999996  


Q ss_pred             CcEEEEEECCCcEEEEEccCC
Q 001163          654 GILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       654 ~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      .+.+++|+.||+|++||+..+
T Consensus       410 ~krIVSGaYDGkikvWdl~aa  430 (499)
T KOG0281|consen  410 NKRIVSGAYDGKIKVWDLQAA  430 (499)
T ss_pred             CceeeeccccceEEEEecccc
Confidence            568999999999999999776

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=5.6e-31  Score=271.35  Aligned_cols=285  Identities=19%  Similarity=0.253  Sum_probs=241.6

Q ss_pred             ccccccEEEEEEec-CCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEE
Q 001163          773 NLTAMRVSRLIYTN-SGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFAL  851 (1134)
Q Consensus       773 ~~~~~~i~~l~~sp-dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~  851 (1134)
                      .+|...|+++.|.| .+.+|++++.|+.|+||++-                   +  .+.++.. +.+  |..+|.+++|
T Consensus       211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy-------------------~--~~~~lrt-f~g--H~k~Vrd~~~  266 (503)
T KOG0282|consen  211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVY-------------------D--DRRCLRT-FKG--HRKPVRDASF  266 (503)
T ss_pred             cCCccccchhhhccceeeEEEecCCCceEEEEEEe-------------------c--Ccceehh-hhc--chhhhhhhhc
Confidence            56999999999999 89999999999999999753                   3  3344432 444  9999999999


Q ss_pred             cCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCce
Q 001163          852 SKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRI  930 (1134)
Q Consensus       852 s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V  930 (1134)
                      +.+|..+.+++ |+.|++||+++|+++..+. ....++|+.|.|++.+.+++|+.|+.|+.||+++++.++.+..|-+.|
T Consensus       267 s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i  345 (503)
T KOG0282|consen  267 NNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAI  345 (503)
T ss_pred             cccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhhe
Confidence            99999999999 9999999999999999996 456789999999655899999999999999999999999999999999


Q ss_pred             EEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCcc
Q 001163          931 TGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLE 1009 (1134)
Q Consensus       931 ~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~~ 1009 (1134)
                      ..+.|-++|++++++++|++++||+....-..+  .+.....|     ...++..+|.++++++ +.|..|.+|.+...-
T Consensus       346 ~~i~F~~~g~rFissSDdks~riWe~~~~v~ik--~i~~~~~h-----smP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~  418 (503)
T KOG0282|consen  346 LDITFVDEGRRFISSSDDKSVRIWENRIPVPIK--NIADPEMH-----TMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF  418 (503)
T ss_pred             eeeEEccCCceEeeeccCccEEEEEcCCCccch--hhcchhhc-----cCcceecCCCCCeehhhccCceEEEEeccccc
Confidence            999999999999999999999999988744221  22222222     3688999999999999 899999999875432


Q ss_pred             ---cceeeccCCC--ccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCC
Q 001163         1010 ---CLKQFVPREA--SGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDP 1084 (1134)
Q Consensus      1010 ---~~~~~~~~~h--~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~ 1084 (1134)
                         ....+.  +|  .+--..+.|||||++|++|+.||.+.+||..+-+++..+.       +|...+..+  .|+|...
T Consensus       419 r~nkkK~fe--Gh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk-------ah~~~ci~v--~wHP~e~  487 (503)
T KOG0282|consen  419 RLNKKKRFE--GHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK-------AHDQPCIGV--DWHPVEP  487 (503)
T ss_pred             ccCHhhhhc--ceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc-------cCCcceEEE--EecCCCc
Confidence               122333  55  5667789999999999999999999999999999887776       565666555  9999999


Q ss_pred             CEEEEEecCCcEEEEe
Q 001163         1085 NQFALGLTDGGVYIIE 1100 (1134)
Q Consensus      1085 ~~l~s~~~Dg~v~vW~ 1100 (1134)
                      ..+|+++.||.|++|+
T Consensus       488 Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  488 SKVATCGWDGLIKIWD  503 (503)
T ss_pred             ceeEecccCceeEecC
Confidence            9999999999999996

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=9.4e-31  Score=246.04  Aligned_cols=288  Identities=20%  Similarity=0.313  Sum_probs=253.6

Q ss_pred             EEEeecCCCeeEEEEcC---CCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEE
Q 001163          350 VMTLNQGSAVKSMDFHP---VQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW  426 (1134)
Q Consensus       350 ~~~~~h~~~V~~v~fsp---~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  426 (1134)
                      +..-+|..+|..++|||   +| |+|.+++.||.-.+-+-++|.-+.+                   +.||.+.|++...
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~~l   67 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSATL   67 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeeeec
Confidence            34456999999999996   56 5788999999999999999987765                   7899999999999


Q ss_pred             cCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCc-eeEEecC
Q 001163          427 SPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-KQYIFEG  505 (1134)
Q Consensus       427 spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~  505 (1134)
                      +.+..+.|+++.|-+.+|||.-+|..+.   ++ .|..-|.+++|+.|.+  +|+||+.++.++|+|+...+ +...+.+
T Consensus        68 ~~na~~aasaaadftakvw~a~tgdelh---sf-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~g  141 (334)
T KOG0278|consen   68 NKNATRAASAAADFTAKVWDAVTGDELH---SF-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISG  141 (334)
T ss_pred             Cchhhhhhhhcccchhhhhhhhhhhhhh---hh-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcC
Confidence            9999999999999999999999998776   33 4889999999999999  79999999999999998764 5678999


Q ss_pred             CCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC
Q 001163          506 HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES  585 (1134)
Q Consensus       506 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~  585 (1134)
                      |.+.|..+.|....  +.|++.+.|++||+||.+++.....+.. .++|+++.++++|++|.++...     .|..||..
T Consensus       142 htg~Ir~v~wc~eD--~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~gs-----sV~Fwdak  213 (334)
T KOG0278|consen  142 HTGGIRTVLWCHED--KCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAYGS-----SVKFWDAK  213 (334)
T ss_pred             CCCcceeEEEeccC--ceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEecCc-----eeEEeccc
Confidence            99999999987554  6788889999999999999888877765 5689999999999998887432     39999999


Q ss_pred             CCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCc
Q 001163          586 EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNG  665 (1134)
Q Consensus       586 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~  665 (1134)
                      +...++.+....  .|.+...+|+...+++|++|..++.||+.+++.+... ..+|.++|.|+.|+|+|...++|+.||+
T Consensus       214 sf~~lKs~k~P~--nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~gpVhcVrFSPdGE~yAsGSEDGT  290 (334)
T KOG0278|consen  214 SFGLLKSYKMPC--NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFGPVHCVRFSPDGELYASGSEDGT  290 (334)
T ss_pred             cccceeeccCcc--ccccccccCCCceEEecCcceEEEEEeccCCceeeec-ccCCCCceEEEEECCCCceeeccCCCce
Confidence            999998887765  5888999999999999999999999999999999886 2355889999999999999999999999


Q ss_pred             EEEEEccCC
Q 001163          666 IKILANADG  674 (1134)
Q Consensus       666 i~iw~~~~~  674 (1134)
                      |++|....+
T Consensus       291 irlWQt~~~  299 (334)
T KOG0278|consen  291 IRLWQTTPG  299 (334)
T ss_pred             EEEEEecCC
Confidence            999988665

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.5e-29  Score=235.93  Aligned_cols=247  Identities=19%  Similarity=0.277  Sum_probs=217.4

Q ss_pred             cccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEE
Q 001163          412 SLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV  491 (1134)
Q Consensus       412 ~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i  491 (1134)
                      ..+..|+++|.++.|+-||+|.++++.|.+|++|+...|.+++   +..+|...|..++.+.|+.  .+++|+.|+.+.+
T Consensus        11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~v   85 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQV   85 (307)
T ss_pred             eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEE
Confidence            3578899999999999999999999999999999999999887   7889999999999999998  6999999999999


Q ss_pred             EECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCC--ceeeecCCCCCeeEEEECcCCCEEEEE
Q 001163          492 WDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG--SRVDYDAPGHSSTMMAYSADGARLFSC  569 (1134)
Q Consensus       492 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~  569 (1134)
                      ||+.+|+.++.|++|.+.|+.+.|+...  ..+++|+.|.++++||-+...  ++..+......|.++..+  +..++++
T Consensus        86 wDV~TGkv~Rr~rgH~aqVNtV~fNees--SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaG  161 (307)
T KOG0316|consen   86 WDVNTGKVDRRFRGHLAQVNTVRFNEES--SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAG  161 (307)
T ss_pred             EEcccCeeeeecccccceeeEEEecCcc--eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEee
Confidence            9999999999999999999999996544  899999999999999987654  444455455577777764  5678888


Q ss_pred             ecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEE
Q 001163          570 GTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIR  649 (1134)
Q Consensus       570 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  649 (1134)
                      +.|+    .++.||++.|+....+-++   +|++++|+++++..++++-|+++++.|-.+|+++..+.+|.....-..++
T Consensus       162 S~DG----tvRtydiR~G~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~  234 (307)
T KOG0316|consen  162 SVDG----TVRTYDIRKGTLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCC  234 (307)
T ss_pred             ccCC----cEEEEEeecceeehhhcCC---cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeee
Confidence            7654    5999999999988777775   89999999999999999999999999999999999999876655555677


Q ss_pred             EcCCCcEEEEEECCCcEEEEEccCC
Q 001163          650 FNKEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       650 ~sp~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      ++.....+++|++||.+++||+.+.
T Consensus       235 l~qsdthV~sgSEDG~Vy~wdLvd~  259 (307)
T KOG0316|consen  235 LNQSDTHVFSGSEDGKVYFWDLVDE  259 (307)
T ss_pred             ecccceeEEeccCCceEEEEEeccc
Confidence            7777789999999999999999877

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=1.7e-28  Score=304.17  Aligned_cols=292  Identities=12%  Similarity=0.165  Sum_probs=236.1

Q ss_pred             ecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC-CCCE
Q 001163          354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTL  432 (1134)
Q Consensus       354 ~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~  432 (1134)
                      .|...|++++|+|+|+ ++|+|+.|+.|+|||......... .          ...... ...+...|.+++|+| ++.+
T Consensus       481 ~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~----------~~~~~~-~~~~~~~v~~l~~~~~~~~~  547 (793)
T PLN00181        481 NSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-D----------IHYPVV-ELASRSKLSGICWNSYIKSQ  547 (793)
T ss_pred             CCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-c----------cccceE-EecccCceeeEEeccCCCCE
Confidence            3889999999999999 568999999999999864211000 0          000000 112356899999998 5889


Q ss_pred             EEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEec-CCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEE
Q 001163          433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY-PNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY  511 (1134)
Q Consensus       433 las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~  511 (1134)
                      ||+++.||+|++||+.+++.+.   .+.+|.+.|++++|+| ++.  +|+||+.|++|++||+.++..+..+..+ ..|.
T Consensus       548 las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~  621 (793)
T PLN00181        548 VASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-ANIC  621 (793)
T ss_pred             EEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CCeE
Confidence            9999999999999999887655   6789999999999997 666  7999999999999999999999888755 6788


Q ss_pred             EEeccccCCccEEEEecCCCcEEEEecCCCC-ceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC---
Q 001163          512 SICPHHKENIQFIFSTATDGKIKAWLYDNLG-SRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG---  587 (1134)
Q Consensus       512 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~---  587 (1134)
                      ++.|.+ +++.+|++|+.||.|++||++... ....+..|...|.++.|. ++..+++++.|+    .|++||+..+   
T Consensus       622 ~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~----~ikiWd~~~~~~~  695 (793)
T PLN00181        622 CVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDN----TLKLWDLSMSISG  695 (793)
T ss_pred             EEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCC----EEEEEeCCCCccc
Confidence            888853 456899999999999999998765 345566788899999997 778899887644    5999999743   


Q ss_pred             ---eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEe-----------cCCCCCCcceEEEcCC
Q 001163          588 ---AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID-----------ADGGLQASPCIRFNKE  653 (1134)
Q Consensus       588 ---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~v~~v~~sp~  653 (1134)
                         ..+..+.+|.. .+..++|++++.+|++|+.|+.|++|+.....++....           ...+...|.+++|+|+
T Consensus       696 ~~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~  774 (793)
T PLN00181        696 INETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ  774 (793)
T ss_pred             cCCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCC
Confidence               56788888876 78899999999999999999999999987665443321           1223456899999999


Q ss_pred             CcEEEEEECCCcEEEEEc
Q 001163          654 GILLAVSTNDNGIKILAN  671 (1134)
Q Consensus       654 ~~~l~~~~~dg~i~iw~~  671 (1134)
                      +..|++|+.||.|+||++
T Consensus       775 ~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        775 SSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCeEEEecCCCcEEEEec
Confidence            999999999999999985

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=2.9e-28  Score=267.76  Aligned_cols=247  Identities=24%  Similarity=0.395  Sum_probs=218.6

Q ss_pred             cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163          414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD  493 (1134)
Q Consensus       414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd  493 (1134)
                      +.+|.++|++++|+|++++|++++.||.|++|++.+++...   .+..|...+..+.|+++++  .+++++.|+.|++||
T Consensus         5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~   79 (289)
T cd00200           5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD   79 (289)
T ss_pred             hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence            56899999999999999999999999999999999876444   5778999999999999997  799999999999999


Q ss_pred             CCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCC
Q 001163          494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK  573 (1134)
Q Consensus       494 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~  573 (1134)
                      +.+++.+..+..|...+.++.|++.  +.++++++.|+.|++||+.+.+....+..+...+.++.|+|++.++++++.+ 
T Consensus        80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-  156 (289)
T cd00200          80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQD-  156 (289)
T ss_pred             cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCC-
Confidence            9998899999999999999999765  4788888889999999999777777777777789999999999888887633 


Q ss_pred             CCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCC
Q 001163          574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE  653 (1134)
Q Consensus       574 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~  653 (1134)
                         +.+.+||+.+++.+..+..+.. .+.++.|+|+++.+++++.+|.|++||+.+++.+..+..+  ...+.++.|+|+
T Consensus       157 ---~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~  230 (289)
T cd00200         157 ---GTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH--ENGVNSVAFSPD  230 (289)
T ss_pred             ---CcEEEEEccccccceeEecCcc-ccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhc--CCceEEEEEcCC
Confidence               3599999999998888887765 8999999999999999999999999999998888877644  558999999999


Q ss_pred             CcEEEEEECCCcEEEEEccCC
Q 001163          654 GILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       654 ~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      +.++++++.||.+++|++.++
T Consensus       231 ~~~~~~~~~~~~i~i~~~~~~  251 (289)
T cd00200         231 GYLLASGSEDGTIRVWDLRTG  251 (289)
T ss_pred             CcEEEEEcCCCcEEEEEcCCc
Confidence            889988888999999998764

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=1e-28  Score=239.36  Aligned_cols=307  Identities=16%  Similarity=0.219  Sum_probs=240.6

Q ss_pred             EeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccc-cCccccccccccCCCCEEEEEEcCCC
Q 001163          352 TLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGA-CSMPLQASLSSDYTASVNRVMWSPDG  430 (1134)
Q Consensus       352 ~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~V~~l~~spd~  430 (1134)
                      .-.|++.+.+.+|||||. |+|+|+.|..|+|.|++..-... ....+..... ...|. ...+..|.++|+++.|+|..
T Consensus       108 lt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks-~~~em~~~~~qa~hPv-IRTlYDH~devn~l~FHPre  184 (430)
T KOG0640|consen  108 LTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKS-KPKEMISGDTQARHPV-IRTLYDHVDEVNDLDFHPRE  184 (430)
T ss_pred             EeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhc-chhhhccCCcccCCce-EeehhhccCcccceeecchh
Confidence            344999999999999998 88999999999999997321100 0000000000 01111 12477899999999999999


Q ss_pred             CEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEe---cCCC
Q 001163          431 TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF---EGHE  507 (1134)
Q Consensus       431 ~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~---~~h~  507 (1134)
                      ..|++|+.|++|+++|+......+.++.+ ....+|.++.|+|.|.  +|+.|....++++||+.+-++-..-   .+|.
T Consensus       185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd~qht  261 (430)
T KOG0640|consen  185 TILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT  261 (430)
T ss_pred             heEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCcccccc
Confidence            99999999999999999865433333223 3456899999999999  8999999999999999998876543   4699


Q ss_pred             cCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec-CCC-CCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC
Q 001163          508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-APG-HSSTMMAYSADGARLFSCGTNKEGESYLVEWNES  585 (1134)
Q Consensus       508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~  585 (1134)
                      +.|+++.+++  .+.+.++++.||.|++||--..+++..+. .|+ ..|.+..|..+|+++++.+.    +..+++|.+.
T Consensus       262 ~ai~~V~Ys~--t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~vkLWEi~  335 (430)
T KOG0640|consen  262 GAITQVRYSS--TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTVKLWEIS  335 (430)
T ss_pred             cceeEEEecC--CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----cceeeeeeec
Confidence            9999998854  45899999999999999987777776654 343 38999999999999999876    4469999999


Q ss_pred             CCeeEEEecCCCCC----ceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEE
Q 001163          586 EGAVKRTYHGLGKR----SVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS  660 (1134)
Q Consensus       586 ~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~  660 (1134)
                      +++.+..+.|....    .-+...|+....+++.-. ..+.+.-||.+++..+..+.. +|.+.+..+.-+|.+.-++++
T Consensus       336 t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~p~FmTc  414 (430)
T KOG0640|consen  336 TGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVEPAFMTC  414 (430)
T ss_pred             CCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCCCceeee
Confidence            99999999876211    123355777777877766 567899999999887776654 678899999999999999999


Q ss_pred             ECCCcEEEEEc
Q 001163          661 TNDNGIKILAN  671 (1134)
Q Consensus       661 ~~dg~i~iw~~  671 (1134)
                      ++|..+|+|--
T Consensus       415 sdD~raRFWyr  425 (430)
T KOG0640|consen  415 SDDFRARFWYR  425 (430)
T ss_pred             cccceeeeeee
Confidence            99999999963

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=9.5e-28  Score=222.03  Aligned_cols=309  Identities=17%  Similarity=0.252  Sum_probs=241.1

Q ss_pred             eeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc
Q 001163          348 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS  427 (1134)
Q Consensus       348 ~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  427 (1134)
                      +.+.++.....|.+++|+|.|. |.|+|++.++.+|-....-..++..    .+............-+.|.+.|.|.+||
T Consensus        24 ~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~----hea~~~pp~v~~kr~khhkgsiyc~~ws   98 (350)
T KOG0641|consen   24 EAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHA----HEAAKQPPSVLCKRNKHHKGSIYCTAWS   98 (350)
T ss_pred             EEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCcccc----cccccCCCeEEeeeccccCccEEEEEec
Confidence            4566778889999999999999 7799999999998876432222100    0000001111112246799999999999


Q ss_pred             CCCCEEEEEeCCCEEEEEEcc--CCceeeeeeeeecCCCCEEEEEEecC---CCceEEEEEe-CCCeEEEEECCCCceeE
Q 001163          428 PDGTLFGVAYSKHIVHLYTYH--GGDELRNHLEIEAHVGSVNDLAFSYP---NKQLSVVTCG-EDRVIKVWDAVTGTKQY  501 (1134)
Q Consensus       428 pd~~~las~s~dg~v~iwd~~--~~~~~~~~~~l~~h~~~V~~v~~s~~---~~~~~l~s~s-~d~~i~iwd~~~~~~~~  501 (1134)
                      |+|.++|+|++|.+|++.-.+  +.........+..|.+.|..++|..+   +.. +|++++ .|..|++-|..+|+..+
T Consensus        99 ~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~~~  177 (350)
T KOG0641|consen   99 PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQGFH  177 (350)
T ss_pred             CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCcce
Confidence            999999999999999987554  33334444568889999999999754   222 566665 47899999999999999


Q ss_pred             EecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecC-------CCCCeeEEEECcCCCEEEEEecCCC
Q 001163          502 IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA-------PGHSSTMMAYSADGARLFSCGTNKE  574 (1134)
Q Consensus       502 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~~~~  574 (1134)
                      .+.+|.+-|.++.- .  ++-.+++|+.|.+|++||++-..+...+..       ....|.++++.|.|++|+++..|. 
T Consensus       178 a~sghtghilalys-w--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ds-  253 (350)
T KOG0641|consen  178 ALSGHTGHILALYS-W--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADS-  253 (350)
T ss_pred             eecCCcccEEEEEE-e--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCC-
Confidence            99999999998752 2  347899999999999999987766655432       124789999999999999986543 


Q ss_pred             CCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC----ceeEEEecCCCCCCcceEEE
Q 001163          575 GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV----NLLASIDADGGLQASPCIRF  650 (1134)
Q Consensus       575 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~~  650 (1134)
                         ...+||++.++.++.|..|.. .|.++.|+|...++++++.|..|++-|+...    -++....  .|...+..+.|
T Consensus       254 ---sc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~--ehkdk~i~~rw  327 (350)
T KOG0641|consen  254 ---SCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVA--EHKDKAIQCRW  327 (350)
T ss_pred             ---ceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEE--eccCceEEEEe
Confidence               488999999999999999987 8999999999999999999999999998642    1223333  44667889999


Q ss_pred             cCCCcEEEEEECCCcEEEEEcc
Q 001163          651 NKEGILLAVSTNDNGIKILANA  672 (1134)
Q Consensus       651 sp~~~~l~~~~~dg~i~iw~~~  672 (1134)
                      +|..-.+++.+.|.++.+|.+.
T Consensus       328 h~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  328 HPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             cCccceeeeccCcceEEEeccC
Confidence            9999899999999999999753

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=2.7e-28  Score=302.25  Aligned_cols=296  Identities=13%  Similarity=0.153  Sum_probs=231.4

Q ss_pred             cccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcC
Q 001163          774 LTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSK  853 (1134)
Q Consensus       774 ~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~  853 (1134)
                      .|...|.+++|+|+|+++++++.|+.|+||++.....  .+.          +..  ... ..+   .+...+.+++|++
T Consensus       481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~--~~~----------~~~--~~~-~~~---~~~~~v~~l~~~~  542 (793)
T PLN00181        481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIK--DGR----------DIH--YPV-VEL---ASRSKLSGICWNS  542 (793)
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccc--ccc----------ccc--cce-EEe---cccCceeeEEecc
Confidence            4888999999999999999999999999998753100  000          000  000 001   1346788999987


Q ss_pred             -CCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceE
Q 001163          854 -NDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRIT  931 (1134)
Q Consensus       854 -dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~  931 (1134)
                       ++.+|++++ ||+|++||+.+++.+..+.+|...|++++|+|.++.+|++|+.||.|++||+.+++.+..+..| ..|.
T Consensus       543 ~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~  621 (793)
T PLN00181        543 YIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANIC  621 (793)
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeE
Confidence             478899988 9999999999999999999999999999999757889999999999999999999888888755 6799


Q ss_pred             EEEEe-eCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCc-
Q 001163          932 GLAFS-NTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKL- 1008 (1134)
Q Consensus       932 ~l~~s-~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~- 1008 (1134)
                      ++.|+ +++.+|++|+.|+.|++||+...+.    .+....+|.   ..|.++.|. ++.+|++ +.|++|++||+..+ 
T Consensus       622 ~v~~~~~~g~~latgs~dg~I~iwD~~~~~~----~~~~~~~h~---~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~  693 (793)
T PLN00181        622 CVQFPSESGRSLAFGSADHKVYYYDLRNPKL----PLCTMIGHS---KTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSI  693 (793)
T ss_pred             EEEEeCCCCCEEEEEeCCCeEEEEECCCCCc----cceEecCCC---CCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCc
Confidence            99995 5799999999999999999986431    122333444   468999997 6667777 68999999999753 


Q ss_pred             -----ccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCc------ccCCCCCCCceeEEE
Q 001163         1009 -----ECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTA------YLPTNPSLRVYPLVI 1077 (1134)
Q Consensus      1009 -----~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~------~~~~~h~~~v~~~~~ 1077 (1134)
                           ..+..+.  +|...+..++|++++.+|++|+.|++|++|+.........+....      .....|...|.++  
T Consensus       694 ~~~~~~~l~~~~--gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v--  769 (793)
T PLN00181        694 SGINETPLHSFM--GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSV--  769 (793)
T ss_pred             cccCCcceEEEc--CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEE--
Confidence                 3455555  889999999999999999999999999999987765543322110      0111244445555  


Q ss_pred             EecCCCCCEEEEEecCCcEEEEeC
Q 001163         1078 AGNPTDPNQFALGLTDGGVYIIEP 1101 (1134)
Q Consensus      1078 ~~~p~~~~~l~s~~~Dg~v~vW~~ 1101 (1134)
                      +|+| ++.+|++|+.||.|++|++
T Consensus       770 ~ws~-~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        770 CWRG-QSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EEcC-CCCeEEEecCCCcEEEEec
Confidence            8889 7899999999999999986

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.97  E-value=1.2e-27  Score=252.62  Aligned_cols=672  Identities=14%  Similarity=0.151  Sum_probs=361.1

Q ss_pred             ccccCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEEccCCcee---eeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCe
Q 001163          413 LSSDYTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDEL---RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV  488 (1134)
Q Consensus       413 ~~~~h~~~V~~l~~sp-d~~~las~s~dg~v~iwd~~~~~~~---~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~  488 (1134)
                      ++.+|.+.|+.+.||| +..+||+||.|..|+||.+..|-.-   .....+.+..-.|.++.|+|....  |+..+..|+
T Consensus        74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg--il~s~a~g~  151 (1012)
T KOG1445|consen   74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG--ILASGAHGS  151 (1012)
T ss_pred             eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc--eEEeccCce
Confidence            4789999999999999 7889999999999999999854321   112223444557899999998774  444455689


Q ss_pred             EEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCC-ceeeecCCCC-CeeEEEECcCCCEE
Q 001163          489 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG-SRVDYDAPGH-SSTMMAYSADGARL  566 (1134)
Q Consensus       489 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~-~v~~~~~s~~~~~l  566 (1134)
                      ++|||+.+++.+..+.+|...|.+..|  +.||.+|++.+.|+.|+|||.+... .......|++ .-..+.|.-+-.+|
T Consensus       152 v~i~D~stqk~~~el~~h~d~vQSa~W--seDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rl  229 (1012)
T KOG1445|consen  152 VYITDISTQKTAVELSGHTDKVQSADW--SEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERL  229 (1012)
T ss_pred             EEEEEcccCceeecccCCchhhhcccc--ccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhh
Confidence            999999999999999999999999988  4677999999999999999988644 3344455544 44567787777788


Q ss_pred             EEEecCCCCCeEEEEEeCCCC-eeEEEecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeE--EEecCCCC
Q 001163          567 FSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLA--SIDADGGL  642 (1134)
Q Consensus       567 ~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~--~~~~~~~~  642 (1134)
                      ++.+.+......|++||.+.. ..+.++.......+..--|.||.+.++.++ .+.+++.+.+...++..  .+... ..
T Consensus       230 isTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~t-le  308 (1012)
T KOG1445|consen  230 ISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELT-LE  308 (1012)
T ss_pred             hhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhc-ch
Confidence            888877666777999998764 455555554444566667899998887776 77888888877654321  11110 01


Q ss_pred             CCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeE--------EEeccCcccccccchhhh-hcccccccccc----cc
Q 001163          643 QASPCIRFNKEGILLAVSTNDNGIKILANADGIRLL--------RTVESRTFDASRVASAAI-VKAPAIGTFGS----AN  709 (1134)
Q Consensus       643 ~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~  709 (1134)
                      ......++-|...+-+..++  ..+++.+... ..+        +.++........-..... .+...-...|+    ..
T Consensus       309 ~~~~GA~lvpkral~VM~~E--V~rvlQLt~~-~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~vqK  385 (1012)
T KOG1445|consen  309 EQTLGATLVPKRALHVMDGE--VDRVLQLTKS-SIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVVQK  385 (1012)
T ss_pred             hhhccceecchhhhhhcchh--hhhheecccC-ceeecccccchhhhhhhhhhhCccccCCccCcCccceecCccccccc
Confidence            11122333333222222221  1122222111 000        000000000000000000 00000000000    00


Q ss_pred             cccccCcCCCCc----ccc-----cccCC----------------CCCCccCccc--ccccccccccccceeeecccCCc
Q 001163          710 ANVGTSLGERTA----PAA-----AMVGM----------------SNDSRNFTDV--KPKIADEAVEKSRIWKLTEITEP  762 (1134)
Q Consensus       710 ~~~s~~~~~~~~----~~~-----~~~~~----------------~~~~~~~~~~--~~~~~~~~d~~i~iw~~~~~~~~  762 (1134)
                      +++.|....+.+    ++.     ....|                +..+...++.  +..+.  ....++-.+.......
T Consensus       386 vSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~--~~~e~r~l~~~~~E~~  463 (1012)
T KOG1445|consen  386 VSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVP--KKEEVRELDYRPYEKE  463 (1012)
T ss_pred             cccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcC--cchhhhhhcccccccc
Confidence            011111111100    000     00000                0000011110  00000  0001111111000000


Q ss_pred             cceeccc---cCCccccccEEEEEEecCCceeeeec----cC--CeEEeeec----CCCCCCccc--c-cccCC------
Q 001163          763 SQCRSLR---LPDNLTAMRVSRLIYTNSGLAILALA----SN--AVHKLWKW----PRNERNSTG--K-ATTNQ------  820 (1134)
Q Consensus       763 ~~~~~~~---~~~~~~~~~i~~l~~spdg~~l~~~~----~d--g~i~vw~~----~~~~~~~~~--~-~~~~~------  820 (1134)
                      .....-.   -...+....+..+  +|....++--.    .|  .+..+-.-    ......+.+  . +.++.      
T Consensus       464 ~g~~~~~~dad~~~g~sS~~s~~--~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~v~~s~  541 (1012)
T KOG1445|consen  464 NGVHTPNADADSTQGNSSPISTI--SPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNRVPLSQ  541 (1012)
T ss_pred             cCccCCCcccccccCCCCCcccc--CCCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCccccccccccc
Confidence            0000000   0000011111100  00000000000    00  00000000    000000000  0 00000      


Q ss_pred             CCcccCCCCCcccc-cCCCC-CCCCC-------------CeeEEEEcCCCCeEEEe---eCCeEEEEEccC-CeEEEE-e
Q 001163          821 APQLWQPPSGILMT-NDISD-TNPED-------------AVPCFALSKNDSYVMSA---SGGKISLFNMMT-FKTMTT-F  880 (1134)
Q Consensus       821 ~~~~~d~~~~~~~~-~~~~~-~~h~~-------------~v~~v~~s~dg~~la~~---sdg~i~lwd~~~-~~~~~~-~  880 (1134)
                      .++--...-|+... ..+.| .+|..             +-.+=-|+.+..++|+-   +.|.|-||++.. |++... +
T Consensus       542 s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~  621 (1012)
T KOG1445|consen  542 SVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVM  621 (1012)
T ss_pred             cccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCCCceEEEEEcCCCCCCCcccc
Confidence            00000000000000 00000 01111             11122244456666643   478999999854 332211 1


Q ss_pred             cC--CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccc-------eEEEeccCccCceEEEEEeeC-CCEEEEEeCCCc
Q 001163          881 MP--PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD-------EVKTKLKGHQKRITGLAFSNT-LNVLVSSGADSQ  950 (1134)
Q Consensus       881 ~~--~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~-------~~~~~l~~h~~~V~~l~~s~d-~~~l~s~s~Dg~  950 (1134)
                      .+  ....|+.+.|.|-|...||++++||.|++|.+..+       +.-..+.+|...|+++.|+|- ...|++++.|.+
T Consensus       622 p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~T  701 (1012)
T KOG1445|consen  622 PGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDST  701 (1012)
T ss_pred             cccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccce
Confidence            11  34569999999999999999999999999999764       334678899999999999984 478999999999


Q ss_pred             EEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCcccceeeccCCCccCEEEEEEc
Q 001163          951 LCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYS 1029 (1134)
Q Consensus       951 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s 1029 (1134)
                      |++||+.+.+     ......+|.   +.|..++|||||+.+|+ +.||+|++|+-..++..-.-....-...-..|.|.
T Consensus       702 i~lWDl~~~~-----~~~~l~gHt---dqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wa  773 (1012)
T KOG1445|consen  702 IELWDLANAK-----LYSRLVGHT---DQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWA  773 (1012)
T ss_pred             eeeeehhhhh-----hhheeccCc---CceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEE
Confidence            9999999865     233455666   58999999999999999 79999999998877643221111112344567888


Q ss_pred             cCCCEEEEEecCC----cEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCCCC
Q 001163         1030 CDSQSIYVAFEEG----SVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAE 1105 (1134)
Q Consensus      1030 ~dg~~l~s~s~Dg----~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~ 1105 (1134)
                      -||+++++.+-|+    .|.+||.++..........-      ...-..+.=.|.++.+-+|++|-.|..|.+|++...+
T Consensus       774 cdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~l------Dvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es  847 (1012)
T KOG1445|consen  774 CDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVL------DVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYES  847 (1012)
T ss_pred             ecCcEEEEecccccchhhhhhhhhhhccCCcceeeee------cccCccccccccCCCceEEEecCCCceEEEEEecCCC
Confidence            8999998888774    58899987754311111000      0000111124566667789999999999999997665


Q ss_pred             CCccC
Q 001163         1106 GRWGT 1110 (1134)
Q Consensus      1106 ~~~~~ 1110 (1134)
                      .-..+
T Consensus       848 Py~lp  852 (1012)
T KOG1445|consen  848 PYLLP  852 (1012)
T ss_pred             ceeee
Confidence            44333

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=1.3e-28  Score=245.98  Aligned_cols=290  Identities=20%  Similarity=0.340  Sum_probs=241.1

Q ss_pred             CCceeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEE
Q 001163          345 LPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRV  424 (1134)
Q Consensus       345 ~~~~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  424 (1134)
                      .+++....+.|.+.|.++...  ++ .+.+|++||+++|||........                    +.||.++|.++
T Consensus        94 ~aP~pl~~~~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~Gk~~~~--------------------~~Ght~~ik~v  150 (423)
T KOG0313|consen   94 TAPKPLQCFLHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLKGKSIKT--------------------IVGHTGPIKSV  150 (423)
T ss_pred             CCCCccccccchhhhhhhccc--Cc-eEEEeecCCeeEEEecCCceEEE--------------------EecCCcceeee
Confidence            346677888899999999999  45 45799999999999987554332                    68999999998


Q ss_pred             EEcCCC---CEEEEEeCCCEEEEEEccCCceee-eeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECC-----
Q 001163          425 MWSPDG---TLFGVAYSKHIVHLYTYHGGDELR-NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV-----  495 (1134)
Q Consensus       425 ~~spd~---~~las~s~dg~v~iwd~~~~~~~~-~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~-----  495 (1134)
                      +|--..   ..+++++.|.++++|.++.++... ....-.||...|.++...++|.  .+++||.|.+|+||+..     
T Consensus       151 ~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~  228 (423)
T KOG0313|consen  151 AWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEED  228 (423)
T ss_pred             EEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCccc
Confidence            886533   369999999999999998776432 2223459999999999999999  79999999999999932     


Q ss_pred             --------------------CCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCee
Q 001163          496 --------------------TGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSST  555 (1134)
Q Consensus       496 --------------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~  555 (1134)
                                          ++.++-++.||..+|.++.|.+ .  ..+++++.|.+|+.||+.+++....+.. ...+.
T Consensus       229 ~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~--~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~  304 (423)
T KOG0313|consen  229 ELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-A--TVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLN  304 (423)
T ss_pred             cccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-C--CceEeecccceEEEEEeecccceeeeec-Cccee
Confidence                                1234567889999999999965 3  6899999999999999999888777654 45789


Q ss_pred             EEEECcCCCEEEEEecCCCCCeEEEEEeCCCC---eeEEEecCCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCc
Q 001163          556 MMAYSADGARLFSCGTNKEGESYLVEWNESEG---AVKRTYHGLGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNVN  631 (1134)
Q Consensus       556 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~  631 (1134)
                      ++.++|..++|++++.++    .+++||.+++   -....|.+|.+ .|.++.|+|... .|++++.|+++++||+++.+
T Consensus       305 ~i~~~~~~~Ll~~gssdr----~irl~DPR~~~gs~v~~s~~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k  379 (423)
T KOG0313|consen  305 CISYSPLSKLLASGSSDR----HIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK  379 (423)
T ss_pred             EeecccccceeeecCCCC----ceeecCCCCCCCceeEEeeecchh-hhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence            999999999999998654    5999999976   35668899988 999999999874 57778899999999999877


Q ss_pred             -eeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEc
Q 001163          632 -LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN  671 (1134)
Q Consensus       632 -~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~  671 (1134)
                       ++..+..|  ...|.++.|+ ++..+++|+.|.+|+|+..
T Consensus       380 ~plydI~~h--~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  380 APLYDIAGH--NDKVLSVDWN-EGGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             CcceeeccC--CceEEEEecc-CCceEEeccCcceEEEecc
Confidence             88888866  7789999998 4668999999999999864

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=8.7e-30  Score=247.75  Aligned_cols=291  Identities=18%  Similarity=0.270  Sum_probs=235.7

Q ss_pred             ccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC
Q 001163          775 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN  854 (1134)
Q Consensus       775 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d  854 (1134)
                      ....+.|..|+|||+++++++-||.|.+|++..++...+-+..+.         .. .+       -+..+|.|+.||.|
T Consensus       212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq---------d~-fM-------Mmd~aVlci~FSRD  274 (508)
T KOG0275|consen  212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ---------DN-FM-------MMDDAVLCISFSRD  274 (508)
T ss_pred             cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh---------cc-ee-------ecccceEEEeeccc
Confidence            456788999999999999999999999998876543222211111         11 11       16789999999999


Q ss_pred             CCeEEEee-CCeEEEEEccCCeEEEEec-CCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEE
Q 001163          855 DSYVMSAS-GGKISLFNMMTFKTMTTFM-PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITG  932 (1134)
Q Consensus       855 g~~la~~s-dg~i~lwd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~  932 (1134)
                      ..++|+|+ ||+|++|.+.+|.|++.|. .|...|+|+.||. |+..+.+++.|.+++|.-+.+|++++.++||++-|+.
T Consensus       275 sEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~  353 (508)
T KOG0275|consen  275 SEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNE  353 (508)
T ss_pred             HHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccc
Confidence            99999999 9999999999999999987 8999999999999 7888899999999999999999999999999999999


Q ss_pred             EEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCC-CEEEE-EeeceEEEEeCCCccc
Q 001163          933 LAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQ-THLLA-VHETQIAIYEAPKLEC 1010 (1134)
Q Consensus       933 l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg-~~l~~-~~d~~i~iwd~~~~~~ 1010 (1134)
                      ..|++||.++++++.||+|++|+.++.++..     .+.... .+.+|..+-.-|.+ ..+++ -..++|+|.++. |+.
T Consensus       354 a~ft~dG~~iisaSsDgtvkvW~~KtteC~~-----Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQv  426 (508)
T KOG0275|consen  354 ATFTDDGHHIISASSDGTVKVWHGKTTECLS-----TFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQV  426 (508)
T ss_pred             eEEcCCCCeEEEecCCccEEEecCcchhhhh-----hccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceE
Confidence            9999999999999999999999999877433     222111 12457777776644 33444 467889998886 777


Q ss_pred             ceeeccCC-CccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEE
Q 001163         1011 LKQFVPRE-ASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFAL 1089 (1134)
Q Consensus      1011 ~~~~~~~~-h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s 1089 (1134)
                      ++.+..+. ..+...+.+.||.|.++++.++|+.++.|.+.+|++...+....       ..|-  .++-+| ..++|++
T Consensus       427 VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhE-------kdvI--Gl~HHP-HqNllAs  496 (508)
T KOG0275|consen  427 VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHE-------KDVI--GLTHHP-HQNLLAS  496 (508)
T ss_pred             EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccc-------cccc--ccccCc-ccchhhh
Confidence            77776432 25677888999999999999999999999999999887766433       2233  347778 6889999


Q ss_pred             EecCCcEEEEe
Q 001163         1090 GLTDGGVYIIE 1100 (1134)
Q Consensus      1090 ~~~Dg~v~vW~ 1100 (1134)
                      -+.||.+++|.
T Consensus       497 YsEDgllKLWk  507 (508)
T KOG0275|consen  497 YSEDGLLKLWK  507 (508)
T ss_pred             hcccchhhhcC
Confidence            99999999996

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=1.7e-29  Score=254.89  Aligned_cols=294  Identities=18%  Similarity=0.238  Sum_probs=250.1

Q ss_pred             CCCCceeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCE
Q 001163          343 DDLPKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASV  421 (1134)
Q Consensus       343 d~~~~~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  421 (1134)
                      +.+|......+. |.+.|..+.|-++.. .+++|+.|..|.+|++..++.-.                 ...+.|..++|
T Consensus       161 ~~lpS~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~-----------------~~tLaGs~g~i  222 (459)
T KOG0288|consen  161 DTLPSRALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSEL-----------------ISTLAGSLGNI  222 (459)
T ss_pred             cccchhhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhh-----------------hhhhhccCCCc
Confidence            344555566666 899999999999966 46999999999999998776211                 11367888999


Q ss_pred             EEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeE
Q 001163          422 NRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY  501 (1134)
Q Consensus       422 ~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~  501 (1134)
                      +.+.|.++++++++++.|+.+++|++...+...   +|.||++.|+++.|.....  .+++|+.|.+|++||+....|.+
T Consensus       223 t~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~k  297 (459)
T KOG0288|consen  223 TSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSK  297 (459)
T ss_pred             ceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheec
Confidence            999999999999999999999999999987555   7999999999999998776  59999999999999999999988


Q ss_pred             EecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEE
Q 001163          502 IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE  581 (1134)
Q Consensus       502 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~  581 (1134)
                      ++. ....+..|+..    ...+++|-.|+.|++||.+..........++ .|+++..++++..+++++.|.    .+.+
T Consensus       298 t~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDd----tl~v  367 (459)
T KOG0288|consen  298 TVL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDD----TLKV  367 (459)
T ss_pred             ccc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCC----ceee
Confidence            765 33445566543    2568999999999999999888888877755 999999999999999997643    5999


Q ss_pred             EeCCCCeeEEEecCCC---CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEE
Q 001163          582 WNESEGAVKRTYHGLG---KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLA  658 (1134)
Q Consensus       582 wd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~  658 (1134)
                      .|+++......+....   ....+.+.|+|++.|+++||.||.|+||++.++++...+........|++++|+|.|..++
T Consensus       368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll  447 (459)
T KOG0288|consen  368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL  447 (459)
T ss_pred             eecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence            9999998888776542   2246779999999999999999999999999999999998766555799999999999999


Q ss_pred             EEECCCcEEEE
Q 001163          659 VSTNDNGIKIL  669 (1134)
Q Consensus       659 ~~~~dg~i~iw  669 (1134)
                      +++.++.+.+|
T Consensus       448 sadk~~~v~lW  458 (459)
T KOG0288|consen  448 SADKQKAVTLW  458 (459)
T ss_pred             cccCCcceEec
Confidence            99999999999

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=3.1e-28  Score=276.54  Aligned_cols=306  Identities=19%  Similarity=0.267  Sum_probs=247.6

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEe--CCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGT--NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL  432 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~  432 (1134)
                      +...|.+++.+|||.. +|+|+  .||.++||+.+.=-.-    .+.++..   .+........|.+.|+|+.|||||+|
T Consensus        12 ~~~~IfSIdv~pdg~~-~aTgGq~~d~~~~iW~~~~vl~~----~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~   83 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVK-FATGGQVLDGGIVIWSQDPVLDE----KEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY   83 (942)
T ss_pred             CCeeEEEEEecCCcee-EecCCccccccceeeccccccch----hhhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence            3456899999999994 68999  8999999997532100    0001110   12222236789999999999999999


Q ss_pred             EEEEeCCCEEEEEEccC---C------------ceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC
Q 001163          433 FGVAYSKHIVHLYTYHG---G------------DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG  497 (1134)
Q Consensus       433 las~s~dg~v~iwd~~~---~------------~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~  497 (1134)
                      ||+||+|+.|.||+...   +            +..+....+.+|+..|..++|+|++.  +|+++|.|++|.|||..+.
T Consensus        84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF  161 (942)
T KOG0973|consen   84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF  161 (942)
T ss_pred             EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence            99999999999999873   0            11234557899999999999999999  8999999999999999999


Q ss_pred             ceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCC------CCCeeEEEECcCCCEEEEEec
Q 001163          498 TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP------GHSSTMMAYSADGARLFSCGT  571 (1134)
Q Consensus       498 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~  571 (1134)
                      +.+..+.+|.+.|..+.|.|.  |+++++-+.|++|++|+...-+....+..+      ...+..+.|||||.+|++...
T Consensus       162 ~~~~vl~~H~s~VKGvs~DP~--Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA  239 (942)
T KOG0973|consen  162 ELLKVLRGHQSLVKGVSWDPI--GKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA  239 (942)
T ss_pred             eeeeeeecccccccceEECCc--cCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence            999999999999999999654  599999999999999997665544444332      225778999999999999876


Q ss_pred             CCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCC-------------CC----EEEEEeCCCeEEEEEcCCCceeE
Q 001163          572 NKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTT-------------KN----RFLAAGDEFMIKFWDMDNVNLLA  634 (1134)
Q Consensus       572 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~-------------~~----~l~~~~~dg~i~iwd~~~~~~~~  634 (1134)
                      -+.+...+.|.+-.+.+.-..+-||.. ++.++.|+|.             .+    .+++|+.|++|-||.....+++.
T Consensus       240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~  318 (942)
T KOG0973|consen  240 VNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF  318 (942)
T ss_pred             ccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence            666778899999988898999999998 9999999882             11    56778899999999998888776


Q ss_pred             EEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163          635 SIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       635 ~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      .+..- ....|..++|+|||..|++++.||+|.++.++..
T Consensus       319 vi~~l-f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  319 VIHNL-FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             hhhhh-hcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence            65432 2457899999999999999999999999988654

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=1.5e-27  Score=227.09  Aligned_cols=289  Identities=12%  Similarity=0.132  Sum_probs=239.5

Q ss_pred             EEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCC
Q 001163          350 VMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD  429 (1134)
Q Consensus       350 ~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd  429 (1134)
                      +...+|..+++.+.|+.+|. ||.+++.|.++.||--.+|+.+.+                   +.||++.|+|+..+-+
T Consensus         4 i~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~   63 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWD   63 (327)
T ss_pred             cccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCC
Confidence            33456999999999999999 789999999999999999998875                   7899999999999999


Q ss_pred             CCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEe-----CCCeEEEEECC-------CC
Q 001163          430 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-----EDRVIKVWDAV-------TG  497 (1134)
Q Consensus       430 ~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s-----~d~~i~iwd~~-------~~  497 (1134)
                      .++|++|+.|.++++||+++|+++..   + .-..+|..+.|+++|..  ++.+.     ..+.|.++|++       ..
T Consensus        64 s~~liTGSAD~t~kLWDv~tGk~la~---~-k~~~~Vk~~~F~~~gn~--~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~  137 (327)
T KOG0643|consen   64 SKHLITGSADQTAKLWDVETGKQLAT---W-KTNSPVKRVDFSFGGNL--ILASTDKQMGYTCFVSVFDIRDDSSDIDSE  137 (327)
T ss_pred             cceeeeccccceeEEEEcCCCcEEEE---e-ecCCeeEEEeeccCCcE--EEEEehhhcCcceEEEEEEccCChhhhccc
Confidence            99999999999999999999998773   2 25678999999999983  33332     34578999988       45


Q ss_pred             ceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceee-ecCCCCCeeEEEECcCCCEEEEEecCCCCC
Q 001163          498 TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD-YDAPGHSSTMMAYSADGARLFSCGTNKEGE  576 (1134)
Q Consensus       498 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~  576 (1134)
                      ++...+..+...++.+.|.+.+  ++|++|.+||.|..||.+++..... ...|...|+.+.+++|..++++++.|.   
T Consensus       138 ep~~kI~t~~skit~a~Wg~l~--~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dt---  212 (327)
T KOG0643|consen  138 EPYLKIPTPDSKITSALWGPLG--ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDT---  212 (327)
T ss_pred             CceEEecCCccceeeeeecccC--CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCc---
Confidence            6678888889999999997655  8999999999999999998755443 466788999999999999999998654   


Q ss_pred             eEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCC--eEEEEEcCCC------------ceeEEEecCCCC
Q 001163          577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF--MIKFWDMDNV------------NLLASIDADGGL  642 (1134)
Q Consensus       577 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~------------~~~~~~~~~~~~  642 (1134)
                       +-++||..+-+.++++....  ++++.+++|-...++.|+...  .|.-=+.+.|            +.+..++  +|.
T Consensus       213 -takl~D~~tl~v~Kty~te~--PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvk--GHF  287 (327)
T KOG0643|consen  213 -TAKLVDVRTLEVLKTYTTER--PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVK--GHF  287 (327)
T ss_pred             -cceeeeccceeeEEEeeecc--cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccc--ccc
Confidence             58999999999999998765  899999999988888876322  2222222233            3445555  458


Q ss_pred             CCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163          643 QASPCIRFNKEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       643 ~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      ++|++++|+|+|...++|+.||.||+......
T Consensus       288 GPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~  319 (327)
T KOG0643|consen  288 GPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN  319 (327)
T ss_pred             cCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence            89999999999999999999999999876543

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=5.9e-28  Score=249.83  Aligned_cols=282  Identities=21%  Similarity=0.284  Sum_probs=239.1

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la  434 (1134)
                      ....|++++|||...+=+|+.+. -.|.||+..+......                   +......|.++.|-.||++||
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG~Lla   84 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDGRLLA   84 (487)
T ss_pred             ccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCCeEEE
Confidence            45689999999976654454433 4689999887765542                   344567999999999999999


Q ss_pred             EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEe
Q 001163          435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSIC  514 (1134)
Q Consensus       435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~  514 (1134)
                      +|...|.|+|+|.++...++   .+.+|+.+|..+.|+|++.. .+++|+.|+.+++||+.+......+.+|+..|.|.+
T Consensus        85 aGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~  160 (487)
T KOG0310|consen   85 AGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD  160 (487)
T ss_pred             ccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence            99999999999977755454   68899999999999998887 799999999999999999988779999999999999


Q ss_pred             ccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCe-eEEEe
Q 001163          515 PHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA-VKRTY  593 (1134)
Q Consensus       515 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~  593 (1134)
                      +++..+ .+++||+.||.|++||.+.......--.|+.+|.++.+-|.|..+++++.+     .+++||+.+|. .+..+
T Consensus       161 ~~~~~~-hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn-----~vkVWDl~~G~qll~~~  234 (487)
T KOG0310|consen  161 ISPAND-HIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGN-----SVKVWDLTTGGQLLTSM  234 (487)
T ss_pred             cccCCC-eEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCC-----eEEEEEecCCceehhhh
Confidence            987554 799999999999999999886555445578899999999999999998754     49999999664 44455


Q ss_pred             cCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEE
Q 001163          594 HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILA  670 (1134)
Q Consensus       594 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~  670 (1134)
                      ..|++ .|+|+++..++..|++++-|+.+++||+.+.+.+..+..   .++|.+++.+|+++.++.|-.+|.+.+-+
T Consensus       235 ~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~---~~pvLsiavs~dd~t~viGmsnGlv~~rr  307 (487)
T KOG0310|consen  235 FNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY---PGPVLSIAVSPDDQTVVIGMSNGLVSIRR  307 (487)
T ss_pred             hcccc-eEEEEEeecCCceEeecccccceEEEEccceEEEEeeec---ccceeeEEecCCCceEEEecccceeeeeh
Confidence            55776 999999999999999999999999999999999988865   45799999999999999999999887753

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=3.5e-27  Score=224.02  Aligned_cols=275  Identities=17%  Similarity=0.235  Sum_probs=235.3

Q ss_pred             ecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC-CCCE
Q 001163          354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTL  432 (1134)
Q Consensus       354 ~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~  432 (1134)
                      +|...|.+|+|+.+|.+| |+|+.|+++.+|+++.......                 ....+|.+.|-.++|+| ...+
T Consensus        18 ~~~~~v~Sv~wn~~g~~l-asgs~dktv~v~n~e~~r~~~~-----------------~~~~gh~~svdql~w~~~~~d~   79 (313)
T KOG1407|consen   18 GHVQKVHSVAWNCDGTKL-ASGSFDKTVSVWNLERDRFRKE-----------------LVYRGHTDSVDQLCWDPKHPDL   79 (313)
T ss_pred             hhhhcceEEEEcccCcee-eecccCCceEEEEecchhhhhh-----------------hcccCCCcchhhheeCCCCCcc
Confidence            478899999999999965 8999999999999988754332                 12679999999999999 6789


Q ss_pred             EEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEE
Q 001163          433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS  512 (1134)
Q Consensus       433 las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~  512 (1134)
                      +++++.|.+|++||++.+++...   .... +.=..+.|+|+|.  +++.++.|..|.+.|.++.+.+...+ ....+.-
T Consensus        80 ~atas~dk~ir~wd~r~~k~~~~---i~~~-~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne  152 (313)
T KOG1407|consen   80 FATASGDKTIRIWDIRSGKCTAR---IETK-GENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNE  152 (313)
T ss_pred             eEEecCCceEEEEEeccCcEEEE---eecc-CcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccceeee
Confidence            99999999999999999987763   3322 3334578999999  79999999999999999888877665 4456777


Q ss_pred             EeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEE
Q 001163          513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRT  592 (1134)
Q Consensus       513 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~  592 (1134)
                      ++|+.++  ++++.....|+|.|-.....++...+..|.....++.|+|+|+++++|+.|    ..+.+||+..--+.+.
T Consensus       153 ~~w~~~n--d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsAD----AlvSLWD~~ELiC~R~  226 (313)
T KOG1407|consen  153 ISWNNSN--DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSAD----ALVSLWDVDELICERC  226 (313)
T ss_pred             eeecCCC--CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeecccc----ceeeccChhHhhhhee
Confidence            8887444  566666667999999999999999999999999999999999999999864    4699999999999999


Q ss_pred             ecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECC
Q 001163          593 YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND  663 (1134)
Q Consensus       593 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d  663 (1134)
                      +..+.- +|+.+.|+.+|++|+++++|..|-|=+.++|..+..++.   .++...|+|+|...+||-+++|
T Consensus       227 isRldw-pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~---~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  227 ISRLDW-PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC---EGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             eccccC-ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec---cCCceeEEecCCCceeeEEecC
Confidence            988876 999999999999999999999999999999999999976   4467899999999999988765

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=2.7e-27  Score=225.41  Aligned_cols=234  Identities=12%  Similarity=0.208  Sum_probs=200.8

Q ss_pred             cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163          414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD  493 (1134)
Q Consensus       414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd  493 (1134)
                      +.||+.+++.+.++.+|.+|.+++.|.++.||-..+|+.+.   ++.||.+.|+|++.+.+.+  +++||+.|.++++||
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLWD   80 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLWD   80 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEEE
Confidence            78999999999999999999999999999999998888766   7899999999999999999  899999999999999


Q ss_pred             CCCCceeEEecCCCcCEEEEeccccCCccEEEEecC-----CCcEEEEecC-------CCCceeeecCCCCCeeEEEECc
Q 001163          494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT-----DGKIKAWLYD-------NLGSRVDYDAPGHSSTMMAYSA  561 (1134)
Q Consensus       494 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-----dg~i~vwd~~-------~~~~~~~~~~~~~~v~~~~~s~  561 (1134)
                      +++|+++..++ ...+|..+.|++.+  ++++....     .+.|.++|++       ..++...+..+...++.+-|.|
T Consensus        81 v~tGk~la~~k-~~~~Vk~~~F~~~g--n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~  157 (327)
T KOG0643|consen   81 VETGKQLATWK-TNSPVKRVDFSFGG--NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP  157 (327)
T ss_pred             cCCCcEEEEee-cCCeeEEEeeccCC--cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc
Confidence            99999999997 56789999886654  55555433     3679999987       3445666777788999999999


Q ss_pred             CCCEEEEEecCCCCCeEEEEEeCCCCeeEE-EecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCC
Q 001163          562 DGARLFSCGTNKEGESYLVEWNESEGAVKR-TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG  640 (1134)
Q Consensus       562 ~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  640 (1134)
                      -++.|++|..++    .|..||.++|+... .-..|.. .|+.+++++|..++++++.|.+-++||..+-+.+.++..  
T Consensus       158 l~~~ii~Ghe~G----~is~~da~~g~~~v~s~~~h~~-~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t--  230 (327)
T KOG0643|consen  158 LGETIIAGHEDG----SISIYDARTGKELVDSDEEHSS-KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT--  230 (327)
T ss_pred             cCCEEEEecCCC----cEEEEEcccCceeeechhhhcc-ccccccccCCcceEEecccCccceeeeccceeeEEEeee--
Confidence            999999997654    59999999985544 4455554 899999999999999999999999999999999988865  


Q ss_pred             CCCCcceEEEcCCCcEEEEEECC
Q 001163          641 GLQASPCIRFNKEGILLAVSTND  663 (1134)
Q Consensus       641 ~~~~v~~v~~sp~~~~l~~~~~d  663 (1134)
                       ..+|++.+++|....++.|+..
T Consensus       231 -e~PvN~aaisP~~d~VilgGGq  252 (327)
T KOG0643|consen  231 -ERPVNTAAISPLLDHVILGGGQ  252 (327)
T ss_pred             -cccccceecccccceEEecCCc
Confidence             4579999999987777776543

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=1.8e-28  Score=230.73  Aligned_cols=288  Identities=17%  Similarity=0.276  Sum_probs=245.3

Q ss_pred             eecCCCCCeeEEEEC---cCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeE
Q 001163          546 DYDAPGHSSTMMAYS---ADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMI  622 (1134)
Q Consensus       546 ~~~~~~~~v~~~~~s---~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  622 (1134)
                      .-.+|..+|..++||   |+|-+|++++.|+  .  -.+-+-.+|..+.+|.+|.. .|.+.+.+.+....++++.|-+-
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~--~--pmlr~g~tgdwigtfeghkg-avw~~~l~~na~~aasaaadfta   83 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDG--K--PMLRNGDTGDWIGTFEGHKG-AVWSATLNKNATRAASAAADFTA   83 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCC--C--chhccCCCCCcEEeeeccCc-ceeeeecCchhhhhhhhcccchh
Confidence            344566689999997   5888899887644  2  55667788999999999998 89999998888888899999999


Q ss_pred             EEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhccccc
Q 001163          623 KFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAI  702 (1134)
Q Consensus       623 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  702 (1134)
                      ++||.-+|..+..+..   ..-|..++|+.|.++|++|+.+..+||||++........+                     
T Consensus        84 kvw~a~tgdelhsf~h---khivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~---------------------  139 (334)
T KOG0278|consen   84 KVWDAVTGDELHSFEH---KHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEI---------------------  139 (334)
T ss_pred             hhhhhhhhhhhhhhhh---hheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhh---------------------
Confidence            9999999999998853   4578999999999999999999999999987652222111                     


Q ss_pred             ccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEE
Q 001163          703 GTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRL  782 (1134)
Q Consensus       703 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l  782 (1134)
                                                                                            .+|.+.|..+
T Consensus       140 ----------------------------------------------------------------------~ghtg~Ir~v  149 (334)
T KOG0278|consen  140 ----------------------------------------------------------------------SGHTGGIRTV  149 (334)
T ss_pred             ----------------------------------------------------------------------cCCCCcceeE
Confidence                                                                                  2378889999


Q ss_pred             EEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee
Q 001163          783 IYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS  862 (1134)
Q Consensus       783 ~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s  862 (1134)
                      .|....+.+++.+.|++||+||.                      .+|..+....    ...+|+++.+++||++|.++.
T Consensus       150 ~wc~eD~~iLSSadd~tVRLWD~----------------------rTgt~v~sL~----~~s~VtSlEvs~dG~ilTia~  203 (334)
T KOG0278|consen  150 LWCHEDKCILSSADDKTVRLWDH----------------------RTGTEVQSLE----FNSPVTSLEVSQDGRILTIAY  203 (334)
T ss_pred             EEeccCceEEeeccCCceEEEEe----------------------ccCcEEEEEe----cCCCCcceeeccCCCEEEEec
Confidence            99999999999999999999864                      4444433321    467899999999999999999


Q ss_pred             CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEec-cCccCceEEEEEeeCCCE
Q 001163          863 GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKL-KGHQKRITGLAFSNTLNV  941 (1134)
Q Consensus       863 dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l-~~h~~~V~~l~~s~d~~~  941 (1134)
                      .+.|.+||..+...+..++ -...|.+...+| +..++++|++|+.++.||..+|+.+..+ ++|-++|.|+.|+|||..
T Consensus       204 gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~  281 (334)
T KOG0278|consen  204 GSSVKFWDAKSFGLLKSYK-MPCNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGEL  281 (334)
T ss_pred             CceeEEeccccccceeecc-CccccccccccC-CCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCce
Confidence            9999999999999998887 556799999999 7889999999999999999999999886 899999999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCc
Q 001163          942 LVSSGADSQLCVWSTDGWE  960 (1134)
Q Consensus       942 l~s~s~Dg~i~iwd~~~~~  960 (1134)
                      .++||.||+|++|....++
T Consensus       282 yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  282 YASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             eeccCCCceEEEEEecCCC
Confidence            9999999999999987655

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=4.1e-27  Score=228.46  Aligned_cols=273  Identities=18%  Similarity=0.269  Sum_probs=218.8

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCc-cceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSR-ERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF  433 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l  433 (1134)
                      ..+.|.+|+|||....+++.||-||+|++|+++.. ....                  .....|.++|.+++|+.||..+
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskV   87 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKV   87 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceE
Confidence            46789999999977778889999999999999874 3221                  1256799999999999999999


Q ss_pred             EEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEE
Q 001163          434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI  513 (1134)
Q Consensus       434 as~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  513 (1134)
                      ++|+.|+.+++||+.+++..    .+..|.++|.++.|-+......|+|||.|++|+.||++...++.++. -.+.++++
T Consensus        88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~  162 (347)
T KOG0647|consen   88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA  162 (347)
T ss_pred             EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence            99999999999999999644    37789999999999887665579999999999999999999998886 45677777


Q ss_pred             eccccCCccEEEEecCCCcEEEEecCCCCceeeec--CCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC--ee
Q 001163          514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD--APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG--AV  589 (1134)
Q Consensus       514 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~  589 (1134)
                      ..-  .  .+++.+..++.|.+|++++........  .-...+++++..+|....+.|+..+  .  +.+..+..+  +.
T Consensus       163 Dv~--~--pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEG--r--v~iq~id~~~~~~  234 (347)
T KOG0647|consen  163 DVL--Y--PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEG--R--VAIQYIDDPNPKD  234 (347)
T ss_pred             hcc--C--ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecc--e--EEEEecCCCCccC
Confidence            542  2  578889999999999997655444322  1233788999988888778887633  3  555555444  55


Q ss_pred             EEEecCCCC--------CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEE
Q 001163          590 KRTYHGLGK--------RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS  660 (1134)
Q Consensus       590 ~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~  660 (1134)
                      -.+|+.|..        ..|++++|+|....|+++|.||++.+||-+....+...+.+  ..+|+|++|+.+|.++|-+
T Consensus       235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~--~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH--PQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC--CCccceeEecCCCCEEEEE
Confidence            556666652        24677999999999999999999999999887777776655  6689999999999988765

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=1.4e-26  Score=220.09  Aligned_cols=277  Identities=16%  Similarity=0.258  Sum_probs=232.8

Q ss_pred             eeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeE--EecCCCcCEEEEeccccCCccEEEEecCCCcEEE
Q 001163          458 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY--IFEGHESPVYSICPHHKENIQFIFSTATDGKIKA  535 (1134)
Q Consensus       458 ~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~v  535 (1134)
                      .+.+|.+.|.+++|+.+|.  .|++|+.|+++.+|++...+.+.  ..++|.+.|-.++|++... +.+++++.|.+|++
T Consensus        15 ~~~~~~~~v~Sv~wn~~g~--~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~-d~~atas~dk~ir~   91 (313)
T KOG1407|consen   15 ELQGHVQKVHSVAWNCDGT--KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP-DLFATASGDKTIRI   91 (313)
T ss_pred             HhhhhhhcceEEEEcccCc--eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC-cceEEecCCceEEE
Confidence            4678999999999999999  79999999999999998886655  3578999999999988665 78999999999999


Q ss_pred             EecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEE
Q 001163          536 WLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLA  615 (1134)
Q Consensus       536 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  615 (1134)
                      ||++..++..........+ .+.|+|+|.+++.+..+.    .|...|.++.+.....+...  .+.-++|+.+++.++.
T Consensus        92 wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD----~it~id~r~~~~~~~~~~~~--e~ne~~w~~~nd~Ffl  164 (313)
T KOG1407|consen   92 WDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDD----RITFIDARTYKIVNEEQFKF--EVNEISWNNSNDLFFL  164 (313)
T ss_pred             EEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcc----cEEEEEecccceeehhcccc--eeeeeeecCCCCEEEE
Confidence            9999998888776655544 578999999999986543    48999999888777665543  5677889988888888


Q ss_pred             EeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhh
Q 001163          616 AGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAA  695 (1134)
Q Consensus       616 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  695 (1134)
                      ....|.|.|..+..-+++..+..|  .....|+.|+|+|+++|+|+.|-.+.+||++.. .+.+.+              
T Consensus       165 t~GlG~v~ILsypsLkpv~si~AH--~snCicI~f~p~GryfA~GsADAlvSLWD~~EL-iC~R~i--------------  227 (313)
T KOG1407|consen  165 TNGLGCVEILSYPSLKPVQSIKAH--PSNCICIEFDPDGRYFATGSADALVSLWDVDEL-ICERCI--------------  227 (313)
T ss_pred             ecCCceEEEEeccccccccccccC--CcceEEEEECCCCceEeeccccceeeccChhHh-hhheee--------------
Confidence            888899999999999999999977  567889999999999999999999999997643 111100              


Q ss_pred             hhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccc
Q 001163          696 IVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLT  775 (1134)
Q Consensus       696 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~  775 (1134)
                                                                                                      
T Consensus       228 --------------------------------------------------------------------------------  227 (313)
T KOG1407|consen  228 --------------------------------------------------------------------------------  227 (313)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCC
Q 001163          776 AMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKND  855 (1134)
Q Consensus       776 ~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg  855 (1134)
                                                                                    +.  +..+|+.+.||.||
T Consensus       228 --------------------------------------------------------------sR--ldwpVRTlSFS~dg  243 (313)
T KOG1407|consen  228 --------------------------------------------------------------SR--LDWPVRTLSFSHDG  243 (313)
T ss_pred             --------------------------------------------------------------cc--ccCceEEEEeccCc
Confidence                                                                          00  56788889999999


Q ss_pred             CeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC
Q 001163          856 SYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDS  907 (1134)
Q Consensus       856 ~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg  907 (1134)
                      ++||+++ |..|-|=++++|..+..+. +.++...++|+| ...+||.++.|.
T Consensus       244 ~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP-k~~LLAyA~ddk  294 (313)
T KOG1407|consen  244 RMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP-KRPLLAYACDDK  294 (313)
T ss_pred             ceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC-CCceeeEEecCC
Confidence            9999998 7888888999999998887 788999999999 888999888763

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=4.2e-27  Score=267.40  Aligned_cols=306  Identities=18%  Similarity=0.241  Sum_probs=240.4

Q ss_pred             ccccEEEEEEecCCceeeeec--cCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEc
Q 001163          775 TAMRVSRLIYTNSGLAILALA--SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALS  852 (1134)
Q Consensus       775 ~~~~i~~l~~spdg~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s  852 (1134)
                      +...|.++..+|||..+++|+  .|+.++||+.+.--.          +...++..-.+.+.. ..  .|.+.|.|+.|+
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l~~-m~--~h~~sv~CVR~S   78 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHLCT-MD--DHDGSVNCVRFS   78 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhhee-ec--cccCceeEEEEC
Confidence            345689999999999999999  799999998763210          011122211111111 22  389999999999


Q ss_pred             CCCCeEEEee-CCeEEEEEcc------------------CCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 001163          853 KNDSYVMSAS-GGKISLFNMM------------------TFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYN  913 (1134)
Q Consensus       853 ~dg~~la~~s-dg~i~lwd~~------------------~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd  913 (1134)
                      +||++||+|+ |..|.||+..                  .++++..+.+|...|..++|+| ++.+||+++.|++|.||+
T Consensus        79 ~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn  157 (942)
T KOG0973|consen   79 PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWN  157 (942)
T ss_pred             CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEc
Confidence            9999999999 6779999875                  2347788999999999999999 999999999999999999


Q ss_pred             cccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEE
Q 001163          914 VRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLL  993 (1134)
Q Consensus       914 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~  993 (1134)
                      ..+.+.+.++++|.+.|..+.|.|-|+++||-+.|++|+||++..+...+  .+..+-.+.........+.|||||++|+
T Consensus       158 ~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k--~It~pf~~~~~~T~f~RlSWSPDG~~la  235 (942)
T KOG0973|consen  158 AKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK--SITKPFEESPLTTFFLRLSWSPDGHHLA  235 (942)
T ss_pred             cccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE--eeccchhhCCCcceeeecccCCCcCeec
Confidence            99999999999999999999999999999999999999999977754332  2222333333335678999999999999


Q ss_pred             E--E---eeceEEEEeCCCcccceeeccCCCccCEEEEEEcc--------C-----CC----EEEEEecCCcEEEeecCC
Q 001163          994 A--V---HETQIAIYEAPKLECLKQFVPREASGPITHATYSC--------D-----SQ----SIYVAFEEGSVGVLTAST 1051 (1134)
Q Consensus       994 ~--~---~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~--------d-----g~----~l~s~s~Dg~i~vwd~~~ 1051 (1134)
                      +  +   .-..+.|.+-.+.+.-..+.  +|.+++.+++|+|        +     ..    .+|+|+.|++|.||....
T Consensus       236 s~nA~n~~~~~~~IieR~tWk~~~~Lv--GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~  313 (942)
T KOG0973|consen  236 SPNAVNGGKSTIAIIERGTWKVDKDLV--GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL  313 (942)
T ss_pred             chhhccCCcceeEEEecCCceeeeeee--cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence            9  3   23478999988877777777  9999999999988        1     11    578999999999999987


Q ss_pred             CcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCCCCCC
Q 001163         1052 LRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGR 1107 (1134)
Q Consensus      1052 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~~~ 1107 (1134)
                      .+++..+.--      -...|  ++++|+| ||-.|+++|.||+|.+..+++.|..
T Consensus       314 ~RPl~vi~~l------f~~SI--~DmsWsp-dG~~LfacS~DGtV~~i~Fee~ElG  360 (942)
T KOG0973|consen  314 PRPLFVIHNL------FNKSI--VDMSWSP-DGFSLFACSLDGTVALIHFEEKELG  360 (942)
T ss_pred             CCchhhhhhh------hcCce--eeeeEcC-CCCeEEEEecCCeEEEEEcchHHhC
Confidence            7776443311      11233  3559999 7999999999999999999876643

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=6.8e-26  Score=257.32  Aligned_cols=286  Identities=12%  Similarity=0.106  Sum_probs=219.7

Q ss_pred             CCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCc-cccccccccCCCCEEEEEEcC-CCCEEE
Q 001163          357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSM-PLQASLSSDYTASVNRVMWSP-DGTLFG  434 (1134)
Q Consensus       357 ~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~V~~l~~sp-d~~~la  434 (1134)
                      ..|....+++|+..+ ++++.+..+..|+...+..+.       .....+. ......+.+|.+.|.+++|+| ++++||
T Consensus        21 ~~i~~~~~~~d~~~~-~~~n~~~~a~~w~~~gg~~v~-------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~La   92 (493)
T PTZ00421         21 LNVTPSTALWDCSNT-IACNDRFIAVPWQQLGSTAVL-------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLF   92 (493)
T ss_pred             eccccccccCCCCCc-EeECCceEEEEEecCCceEEe-------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEE
Confidence            345566677776644 566777777888876553221       1111111 111123689999999999999 899999


Q ss_pred             EEeCCCEEEEEEccCCcee----eeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCE
Q 001163          435 VAYSKHIVHLYTYHGGDEL----RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV  510 (1134)
Q Consensus       435 s~s~dg~v~iwd~~~~~~~----~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v  510 (1134)
                      +|+.|++|+|||+.++...    .....+.+|...|.+++|+|++.. +|++++.|++|+|||+.+++.+..+.+|...|
T Consensus        93 SgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V  171 (493)
T PTZ00421         93 TASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQI  171 (493)
T ss_pred             EEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCce
Confidence            9999999999999865321    223468899999999999998644 79999999999999999999999999999999


Q ss_pred             EEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCC-eeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCe-
Q 001163          511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHS-STMMAYSADGARLFSCGTNKEGESYLVEWNESEGA-  588 (1134)
Q Consensus       511 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-  588 (1134)
                      .+++|++  ++.+|++++.|+.|++||++++.....+..|.+. ...+.|.+++..+++++.++..++.|++||+++.. 
T Consensus       172 ~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~  249 (493)
T PTZ00421        172 TSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS  249 (493)
T ss_pred             EEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence            9999975  4589999999999999999988877777776653 45678999998998887665567789999998754 


Q ss_pred             eEEEecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCC
Q 001163          589 VKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG  654 (1134)
Q Consensus       589 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~  654 (1134)
                      +......+....+....|+++++.+++++ .|+.|++||+.+++++...... ....+..++|.|..
T Consensus       250 p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~-s~~~~~g~~~~pk~  315 (493)
T PTZ00421        250 PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS-SVEPHKGLCMMPKW  315 (493)
T ss_pred             ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc-CCCCCcceEecccc
Confidence            44444444443566678999999999988 5999999999999887765432 34467888898853

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=4.3e-27  Score=222.45  Aligned_cols=284  Identities=17%  Similarity=0.264  Sum_probs=228.4

Q ss_pred             eEEEEcC--CCCeEEEEEe-----CCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC-CCC
Q 001163          360 KSMDFHP--VQQILLVVGT-----NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGT  431 (1134)
Q Consensus       360 ~~v~fsp--~g~~lla~gs-----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~  431 (1134)
                      .++.|||  +++..+|++.     ..|.+.|-++..++-+..  +.               -..-.+.+..++||+ ..+
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~---------------s~d~~D~LfdV~Wse~~e~   74 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQ---------------SYDTEDGLFDVAWSENHEN   74 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EE---------------eeecccceeEeeecCCCcc
Confidence            4778888  4553344442     357899999864443332  11               122457899999999 467


Q ss_pred             EEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEE
Q 001163          432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY  511 (1134)
Q Consensus       432 ~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~  511 (1134)
                      .+++++.||+++|||+...  -.++..++.|...|.++.|++-.++ .++++|.|++|++||...++-+++|.||...|.
T Consensus        75 ~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy  151 (311)
T KOG0277|consen   75 QVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY  151 (311)
T ss_pred             eEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence            8889999999999996433  3355578899999999999997776 577779999999999999999999999999999


Q ss_pred             EEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCC-CEEEEEecCCCCCeEEEEEeCCCC-ee
Q 001163          512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADG-ARLFSCGTNKEGESYLVEWNESEG-AV  589 (1134)
Q Consensus       512 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~-~~  589 (1134)
                      ...|+|... ++++++|.|+++++||++..+....+..|..++.++.|+.-. +.+++++.    +..|+.||++.- .+
T Consensus       152 ~a~~sp~~~-nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v----d~~vr~wDir~~r~p  226 (311)
T KOG0277|consen  152 QAAFSPHIP-NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV----DNLVRGWDIRNLRTP  226 (311)
T ss_pred             EEecCCCCC-CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC----CceEEEEehhhcccc
Confidence            999998654 799999999999999999988888888899999999999754 55666654    456999999875 56


Q ss_pred             EEEecCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCC-ceeEEEecCCCCCCcceEEEcC-CCcEEEEEECCCcE
Q 001163          590 KRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNV-NLLASIDADGGLQASPCIRFNK-EGILLAVSTNDNGI  666 (1134)
Q Consensus       590 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~sp-~~~~l~~~~~dg~i  666 (1134)
                      +..+.+|.- .|+.+.|+|.. ..|++++.|-+++|||...+ ..+.+...|  ..-+..+.|++ ++.++|+.+-|+.+
T Consensus       227 l~eL~gh~~-AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWDe~l  303 (311)
T KOG0277|consen  227 LFELNGHGL-AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLFDPGQVASTGWDELL  303 (311)
T ss_pred             ceeecCCce-EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc--ceEEeccccccccCceeeecccccce
Confidence            778877776 89999999976 67888999999999999844 445555544  56788899998 67899999999999


Q ss_pred             EEEEc
Q 001163          667 KILAN  671 (1134)
Q Consensus       667 ~iw~~  671 (1134)
                      +||+.
T Consensus       304 ~Vw~p  308 (311)
T KOG0277|consen  304 YVWNP  308 (311)
T ss_pred             eeecc
Confidence            99984

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.4e-27  Score=261.53  Aligned_cols=249  Identities=16%  Similarity=0.271  Sum_probs=208.8

Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCc----------------------------e--e------------
Q 001163          416 DYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGD----------------------------E--L------------  453 (1134)
Q Consensus       416 ~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~----------------------------~--~------------  453 (1134)
                      .|.+.|+++.||+||+|||+||.|+.|+||.+...+                            .  .            
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            899999999999999999999999999999986600                            0  0            


Q ss_pred             ---------------eeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEecccc
Q 001163          454 ---------------RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHK  518 (1134)
Q Consensus       454 ---------------~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~  518 (1134)
                                     +++..+.||.+.|..+.||.++   +|+|+|.|++|++|++...+|+..|. |...|+|++|+|.
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPv  420 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPV  420 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEeccc
Confidence                           0223467999999999999876   69999999999999999999999997 9999999999997


Q ss_pred             CCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCC--
Q 001163          519 ENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL--  596 (1134)
Q Consensus       519 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~--  596 (1134)
                      .| +++++|+.|+.||||++...+....... ..-|++++|.|||+..++|+.+|    ..++|+....+....+.-+  
T Consensus       421 DD-ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G----~C~fY~t~~lk~~~~~~I~~~  494 (712)
T KOG0283|consen  421 DD-RYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNG----YCRFYDTEGLKLVSDFHIRLH  494 (712)
T ss_pred             CC-CcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEecc----EEEEEEccCCeEEEeeeEeec
Confidence            66 8999999999999999986554444333 36899999999999999998755    5999999887766554322  


Q ss_pred             -----CCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEE
Q 001163          597 -----GKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILA  670 (1134)
Q Consensus       597 -----~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~  670 (1134)
                           ....|+.+.|.|.. ..+++.+.|..|+|+|.++.+++..+.+......-....|+.||++|+++++|..|++|+
T Consensus       495 ~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~  574 (712)
T KOG0283|consen  495 NKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWK  574 (712)
T ss_pred             cCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEe
Confidence                 11269999998765 458888999999999999999999998765555556789999999999999999999999


Q ss_pred             ccCC
Q 001163          671 NADG  674 (1134)
Q Consensus       671 ~~~~  674 (1134)
                      ....
T Consensus       575 ~~~~  578 (712)
T KOG0283|consen  575 NDSF  578 (712)
T ss_pred             CCCC
Confidence            8543

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=6.9e-27  Score=259.13  Aligned_cols=274  Identities=17%  Similarity=0.250  Sum_probs=213.9

Q ss_pred             cccccEEEEEEecCCceeeeeccCCeEEeeecCCCCC---------------Cccc----------c----------ccc
Q 001163          774 LTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNER---------------NSTG----------K----------ATT  818 (1134)
Q Consensus       774 ~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~---------------~~~~----------~----------~~~  818 (1134)
                      .|.+.|.++.||+||++||+++.|+.|+||.+...+.               ..++          .          ...
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            4999999999999999999999999999999876200               0000          0          000


Q ss_pred             CCCCcccCCCCCcc---cccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcC
Q 001163          819 NQAPQLWQPPSGIL---MTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHP  894 (1134)
Q Consensus       819 ~~~~~~~d~~~~~~---~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp  894 (1134)
                      ... .+.+......   ....+  .||...|..+.||.++ +|++++ |.+|+||++...+|+..|. |..-|+|++|+|
T Consensus       345 s~~-~~~p~~~f~f~ekP~~ef--~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnP  419 (712)
T KOG0283|consen  345 SPC-VLLPLKAFVFSEKPFCEF--KGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNP  419 (712)
T ss_pred             Ccc-ccCCCccccccccchhhh--hccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecc
Confidence            001 0111111100   01112  3599999999999885 555666 9999999999999999998 999999999999


Q ss_pred             CCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCC
Q 001163          895 QDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRT  974 (1134)
Q Consensus       895 ~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  974 (1134)
                      -|.+|+++|+-||.||||++...+++.-...+ .-|++++|+|||+..+.|+.+|.+++|+....+......+....+..
T Consensus       420 vDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk  498 (712)
T KOG0283|consen  420 VDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK  498 (712)
T ss_pred             cCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence            99999999999999999999988877665555 77999999999999999999999999999887765555555554444


Q ss_pred             CCCCCceEEEEcCCCC--EEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCC
Q 001163          975 ASALADTRVQFHLDQT--HLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTL 1052 (1134)
Q Consensus       975 ~~~~~v~~l~fs~dg~--~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~ 1052 (1134)
                      .....|+.+.|.|...  .|+++.|..|+|||..+.+.+..+....-...-....|+.||++|+++++|..|+||+++.-
T Consensus       499 ~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  499 KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             ccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence            4445699999987544  78889999999999988888888873222445567889999999999999999999998554


Q ss_pred             c
Q 001163         1053 R 1053 (1134)
Q Consensus      1053 ~ 1053 (1134)
                      .
T Consensus       579 ~  579 (712)
T KOG0283|consen  579 N  579 (712)
T ss_pred             c
Confidence            3

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2e-25  Score=219.63  Aligned_cols=282  Identities=15%  Similarity=0.256  Sum_probs=232.3

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la  434 (1134)
                      ....|+++.|+++|.++ ++++.|.+++|||..+++.+.+                   +..+.-.|..++|......++
T Consensus        13 ~~~~i~sl~fs~~G~~l-itss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~~~i   72 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLL-ITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSNTVI   72 (311)
T ss_pred             CCCceeEEEecCCCCEE-EEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCceEE
Confidence            36789999999999965 5688899999999999988764                   345667889999998888887


Q ss_pred             EEeC--CCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEE
Q 001163          435 VAYS--KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS  512 (1134)
Q Consensus       435 s~s~--dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~  512 (1134)
                      .++.  |.+|+.-++.+.+.++   -+.||...|++++.+|-+.  .++|++.|++|++||++..++...+.....+|  
T Consensus        73 ~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--  145 (311)
T KOG1446|consen   73 HSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--  145 (311)
T ss_pred             EccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCcc--
Confidence            7776  8899999999999887   6899999999999999987  79999999999999999888887776555555  


Q ss_pred             EeccccCCccEEEEecCCCcEEEEecCCCC--ceeeecCC---CCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC
Q 001163          513 ICPHHKENIQFIFSTATDGKIKAWLYDNLG--SRVDYDAP---GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG  587 (1134)
Q Consensus       513 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~  587 (1134)
                      ++|  ++.|-++|++.....|++||++...  +-..+...   ..+.+.+.|||||+.++.+..    ...+++.|.-+|
T Consensus       146 ~Af--Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~G  219 (311)
T KOG1446|consen  146 AAF--DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFDG  219 (311)
T ss_pred             eeE--CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccCC
Confidence            355  5566788888887799999998652  23333332   457889999999999998864    446999999999


Q ss_pred             eeEEEecCCCCCc--eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCc
Q 001163          588 AVKRTYHGLGKRS--VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNG  665 (1134)
Q Consensus       588 ~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~  665 (1134)
                      ..+.++.++....  -...+|.||++++++|+.||+|.+|+++++..+..+.+. +...+.|+.|+|.-.++++++  ..
T Consensus       220 ~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~--s~  296 (311)
T KOG1446|consen  220 TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSAS--SN  296 (311)
T ss_pred             cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecC--ce
Confidence            9999988876532  246789999999999999999999999999999999874 456889999999877777664  57


Q ss_pred             EEEEEcc
Q 001163          666 IKILANA  672 (1134)
Q Consensus       666 i~iw~~~  672 (1134)
                      +.+|-..
T Consensus       297 l~fw~p~  303 (311)
T KOG1446|consen  297 LVFWLPD  303 (311)
T ss_pred             EEEEecc
Confidence            7788654

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=1.7e-26  Score=261.83  Aligned_cols=277  Identities=17%  Similarity=0.284  Sum_probs=244.4

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la  434 (1134)
                      +...|.+..|. ++  .+.+|+.|.+|++||..++..+..                  -+.||.+.|++++|..-+.+|+
T Consensus       207 ~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~lv  265 (537)
T KOG0274|consen  207 DDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKLV  265 (537)
T ss_pred             Ccchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEEE
Confidence            67889999999 44  368999999999999999987763                  1689999999999998899999


Q ss_pred             EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEe
Q 001163          435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSIC  514 (1134)
Q Consensus       435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~  514 (1134)
                      +|+.|.+++|||+.+|++..   .+.+|...|.++...+  .  ++++|+.|.+|++|++.++.++..+.+|.++|.++.
T Consensus       266 sgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~--~--~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~  338 (537)
T KOG0274|consen  266 SGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDP--F--LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQ  338 (537)
T ss_pred             EEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccC--c--eEeeccCCceEEEEeccCcceEEEeccccccEEEEE
Confidence            99999999999999999877   7889999999998753  3  689999999999999999999999999999999998


Q ss_pred             ccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC-eeEEEe
Q 001163          515 PHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG-AVKRTY  593 (1134)
Q Consensus       515 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~  593 (1134)
                      .+    +.++++|+.|++|++||+.+.++...+.+|...|.++.+.+. ..+++++.|+    .|++||+.+. +++.++
T Consensus       339 ~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~----~IkvWdl~~~~~c~~tl  409 (537)
T KOG0274|consen  339 LD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDT----TIKVWDLRTKRKCIHTL  409 (537)
T ss_pred             ec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeecc----ceEeecCCchhhhhhhh
Confidence            74    379999999999999999999999999999999999988766 8899998764    5999999999 999999


Q ss_pred             cCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccC
Q 001163          594 HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD  673 (1134)
Q Consensus       594 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~  673 (1134)
                      .+|.. .+..+.  ..+++|++++.|++|++||..+++++..+... +...|..+++.  ...+++++.||.+++||+.+
T Consensus       410 ~~h~~-~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~  483 (537)
T KOG0274|consen  410 QGHTS-LVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLRS  483 (537)
T ss_pred             cCCcc-cccccc--cccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEeccc
Confidence            99886 554443  45789999999999999999999999999874 34567777665  46888999999999999998


Q ss_pred             C
Q 001163          674 G  674 (1134)
Q Consensus       674 ~  674 (1134)
                      +
T Consensus       484 ~  484 (537)
T KOG0274|consen  484 G  484 (537)
T ss_pred             C
Confidence            8

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.95  E-value=2.7e-26  Score=229.64  Aligned_cols=308  Identities=16%  Similarity=0.256  Sum_probs=237.6

Q ss_pred             ccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCC-ceEEEEEeCCCeEEEEE
Q 001163          415 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK-QLSVVTCGEDRVIKVWD  493 (1134)
Q Consensus       415 ~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~-~~~l~s~s~d~~i~iwd  493 (1134)
                      .-|.+.|.++...  ++.+++|+.||.++|||.... ...   .+.||.++|.+++|.-.+. ...++++|.|.++++|-
T Consensus       102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk-~~~---~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~  175 (423)
T KOG0313|consen  102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK-SIK---TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWK  175 (423)
T ss_pred             ccchhhhhhhccc--CceEEEeecCCeeEEEecCCc-eEE---EEecCCcceeeeEEEecCCccceEEEecCCceEEEEE
Confidence            3589999999988  889999999999999998754 333   6889999999988864333 12599999999999999


Q ss_pred             CCCCcee----EEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEE
Q 001163          494 AVTGTKQ----YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSC  569 (1134)
Q Consensus       494 ~~~~~~~----~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  569 (1134)
                      ++.++..    +.-+||...|.++...  ++|..+++|+.|.+|++|+... .....++....       -+.++.    
T Consensus       176 ~~~~~~~~~~~~~~~GHk~~V~sVsv~--~sgtr~~SgS~D~~lkiWs~~~-~~~~~~E~~s~-------~rrk~~----  241 (423)
T KOG0313|consen  176 WNVGENKVKALKVCRGHKRSVDSVSVD--SSGTRFCSGSWDTMLKIWSVET-DEEDELESSSN-------RRRKKQ----  241 (423)
T ss_pred             ecCchhhhhHHhHhcccccceeEEEec--CCCCeEEeecccceeeecccCC-Cccccccccch-------hhhhhh----
Confidence            8877543    3445999999999874  5568999999999999998332 11111111000       011100    


Q ss_pred             ecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEE
Q 001163          570 GTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIR  649 (1134)
Q Consensus       570 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  649 (1134)
                               -+-=...++.++.++.+|.+ +|.++.|++ ...+++++-|.+|+.||+.++..+..+..   ...++|+.
T Consensus       242 ---------~~~~~~~~r~P~vtl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~---~ksl~~i~  307 (423)
T KOG0313|consen  242 ---------KREKEGGTRTPLVTLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT---NKSLNCIS  307 (423)
T ss_pred             ---------hhhhcccccCceEEeccccc-ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec---CcceeEee
Confidence                     00111234577888999998 999999988 67899999999999999999999988865   44789999


Q ss_pred             EcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCC
Q 001163          650 FNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGM  729 (1134)
Q Consensus       650 ~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  729 (1134)
                      .+|..++|++|+.|..+++||..++..                                                     
T Consensus       308 ~~~~~~Ll~~gssdr~irl~DPR~~~g-----------------------------------------------------  334 (423)
T KOG0313|consen  308 YSPLSKLLASGSSDRHIRLWDPRTGDG-----------------------------------------------------  334 (423)
T ss_pred             cccccceeeecCCCCceeecCCCCCCC-----------------------------------------------------
Confidence            999999999999999999999766510                                                     


Q ss_pred             CCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCC
Q 001163          730 SNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNE  809 (1134)
Q Consensus       730 ~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~  809 (1134)
                                                                      .+....                          
T Consensus       335 ------------------------------------------------s~v~~s--------------------------  340 (423)
T KOG0313|consen  335 ------------------------------------------------SVVSQS--------------------------  340 (423)
T ss_pred             ------------------------------------------------ceeEEe--------------------------
Confidence                                                            000000                          


Q ss_pred             CCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCC-eEEEee-CCeEEEEEccCCe-EEEEecCCCCC
Q 001163          810 RNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFK-TMTTFMPPPPA  886 (1134)
Q Consensus       810 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~la~~s-dg~i~lwd~~~~~-~~~~~~~~~~~  886 (1134)
                                                 +.  +|.+.|.++.++|... .|++++ |+++++||+++.+ ++..+.+|...
T Consensus       341 ---------------------------~~--gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DK  391 (423)
T KOG0313|consen  341 ---------------------------LI--GHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDK  391 (423)
T ss_pred             ---------------------------ee--cchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCce
Confidence                                       11  2777888888888665 566777 9999999998877 89999999999


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEEc
Q 001163          887 ATFLAFHPQDNNIIAIGMEDSSIQIYNV  914 (1134)
Q Consensus       887 v~~l~~sp~~~~~la~g~~dg~i~iwd~  914 (1134)
                      |.++.|.  ++.++++|+.|.+|+|+.-
T Consensus       392 vl~vdW~--~~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  392 VLSVDWN--EGGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             EEEEecc--CCceEEeccCcceEEEecc
Confidence            9999998  4679999999999999864

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=1.1e-26  Score=225.48  Aligned_cols=294  Identities=16%  Similarity=0.267  Sum_probs=234.4

Q ss_pred             cccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccC------------Cc---eeeeeeeeecCCCCEEEEEEecCCC
Q 001163          412 SLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHG------------GD---ELRNHLEIEAHVGSVNDLAFSYPNK  476 (1134)
Q Consensus       412 ~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~------------~~---~~~~~~~l~~h~~~V~~v~~s~~~~  476 (1134)
                      ..+..|.+++.+.+|||||.++|+|+.|..|+|.|++.            |.   .-..+.+|..|...|+++.|+|...
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~  185 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET  185 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence            35788999999999999999999999999999999871            11   0012336788999999999999998


Q ss_pred             ceEEEEEeCCCeEEEEECCCCceeEEec--CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec---CCC
Q 001163          477 QLSVVTCGEDRVIKVWDAVTGTKQYIFE--GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD---APG  551 (1134)
Q Consensus       477 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~  551 (1134)
                        .|++|+.|++|+++|.......+.++  ....+|.++.|+|.+  .+|+.|..-.++++||+.+.++-..-.   .|.
T Consensus       186 --ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG--efllvgTdHp~~rlYdv~T~QcfvsanPd~qht  261 (430)
T KOG0640|consen  186 --ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG--EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT  261 (430)
T ss_pred             --eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC--ceEEEecCCCceeEEeccceeEeeecCcccccc
Confidence              89999999999999987654333222  256789999998765  899999999999999999877765533   355


Q ss_pred             CCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEec-CCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 001163          552 HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH-GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV  630 (1134)
Q Consensus       552 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  630 (1134)
                      ..|+++.+++.|+..++++.|+    .|++||--+++++.++. .|.+..|.+..|..+++++++.|.|..+++|.+.++
T Consensus       262 ~ai~~V~Ys~t~~lYvTaSkDG----~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~  337 (430)
T KOG0640|consen  262 GAITQVRYSSTGSLYVTASKDG----AIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG  337 (430)
T ss_pred             cceeEEEecCCccEEEEeccCC----cEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence            6899999999999999998755    49999999999999885 455667999999999999999999999999999999


Q ss_pred             ceeEEEecCCCCCC---cceEEEcCCCcEEEEEEC-CCcEEEEEccCCceeEEEeccCcccccccchhhhhccccccccc
Q 001163          631 NLLASIDADGGLQA---SPCIRFNKEGILLAVSTN-DNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFG  706 (1134)
Q Consensus       631 ~~~~~~~~~~~~~~---v~~v~~sp~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  706 (1134)
                      +++..+.+.+..+.   -+...|+....+++.-.+ .+.+.-||..+.                                
T Consensus       338 R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta--------------------------------  385 (430)
T KOG0640|consen  338 RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA--------------------------------  385 (430)
T ss_pred             ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch--------------------------------
Confidence            99999876533222   234556666666554432 456666776554                                


Q ss_pred             ccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEec
Q 001163          707 SANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTN  786 (1134)
Q Consensus       707 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp  786 (1134)
                                                                ..+.+|.                 .+|.+.+..+.-||
T Consensus       386 ------------------------------------------dr~~l~s-----------------lgHn~a~R~i~HSP  406 (430)
T KOG0640|consen  386 ------------------------------------------DRVALLS-----------------LGHNGAVRWIVHSP  406 (430)
T ss_pred             ------------------------------------------hhhhhcc-----------------cCCCCCceEEEeCC
Confidence                                                      1222232                 24899999999999


Q ss_pred             CCceeeeeccCCeEEeee
Q 001163          787 SGLAILALASNAVHKLWK  804 (1134)
Q Consensus       787 dg~~l~~~~~dg~i~vw~  804 (1134)
                      .+..+++++.|-.+++|-
T Consensus       407 ~~p~FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  407 VEPAFMTCSDDFRARFWY  424 (430)
T ss_pred             CCCceeeecccceeeeee
Confidence            999999999999999994

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2e-26  Score=238.55  Aligned_cols=283  Identities=16%  Similarity=0.248  Sum_probs=232.8

Q ss_pred             ccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC
Q 001163          775 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN  854 (1134)
Q Consensus       775 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d  854 (1134)
                      ..+.|.+++|+|...+=++....-.+.+|+....                      ..... +..  ....+.++.|..|
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~----------------------~~~k~-~sr--Fk~~v~s~~fR~D   79 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTR----------------------SVRKT-FSR--FKDVVYSVDFRSD   79 (487)
T ss_pred             ccCcceeEecCCCCCCceEEecccEEEEEecchh----------------------hhhhh-HHh--hccceeEEEeecC
Confidence            5678999999997766555555566777754321                      11111 111  5678999999999


Q ss_pred             CCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEE
Q 001163          855 DSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGL  933 (1134)
Q Consensus       855 g~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l  933 (1134)
                      |+++|+|+ .|.|+|||+.+...++.+.+|..++..+.|+|++++++++|++|+.+++||+.++.....+.+|++.|.+.
T Consensus        80 G~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g  159 (487)
T KOG0310|consen   80 GRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG  159 (487)
T ss_pred             CeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence            99999999 79999999888778889999999999999999999999999999999999999998877999999999999


Q ss_pred             EEeeCC-CEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccce
Q 001163          934 AFSNTL-NVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLK 1012 (1134)
Q Consensus       934 ~~s~d~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~ 1012 (1134)
                      +|+|.. .+++|||.||+|++||+....   ........+     .+|..+.|-|.|..++++....|+|||+.+|....
T Consensus       160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll  231 (487)
T KOG0310|consen  160 DISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLL  231 (487)
T ss_pred             ccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCceeh
Confidence            999864 589999999999999988742   234444444     35899999999999999999999999999665543


Q ss_pred             eeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEec
Q 001163         1013 QFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLT 1092 (1134)
Q Consensus      1013 ~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~ 1092 (1134)
                      .... .|...|+|+++..|++.|++++-|+.|++||+.+.+.+..+..+        +.|.+++++  | |++.++.|..
T Consensus       232 ~~~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~--------~pvLsiavs--~-dd~t~viGms  299 (487)
T KOG0310|consen  232 TSMF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP--------GPVLSIAVS--P-DDQTVVIGMS  299 (487)
T ss_pred             hhhh-cccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc--------cceeeEEec--C-CCceEEEecc
Confidence            3332 59999999999999999999999999999999999998877733        457777554  7 6789999999


Q ss_pred             CCcEEEEeCC
Q 001163         1093 DGGVYIIEPL 1102 (1134)
Q Consensus      1093 Dg~v~vW~~~ 1102 (1134)
                      ||.+.+=+..
T Consensus       300 nGlv~~rr~~  309 (487)
T KOG0310|consen  300 NGLVSIRRRE  309 (487)
T ss_pred             cceeeeehhh
Confidence            9988777543

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=4.8e-26  Score=246.84  Aligned_cols=277  Identities=18%  Similarity=0.267  Sum_probs=237.1

Q ss_pred             EEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCC
Q 001163          361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKH  440 (1134)
Q Consensus       361 ~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg  440 (1134)
                      -++||..+  .+|+|. ...|++|+..+++....                   ..-++..|+++.|+++|.+||+|..+|
T Consensus       182 lldWss~n--~laVal-g~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~~g  239 (484)
T KOG0305|consen  182 LLDWSSAN--VLAVAL-GQSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTSDG  239 (484)
T ss_pred             HhhcccCC--eEEEEe-cceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeecCC
Confidence            56788555  455654 34699999999985542                   222388999999999999999999999


Q ss_pred             EEEEEEccCCceeeeeeeeec-CCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEE-ecCCCcCEEEEecccc
Q 001163          441 IVHLYTYHGGDELRNHLEIEA-HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI-FEGHESPVYSICPHHK  518 (1134)
Q Consensus       441 ~v~iwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~  518 (1134)
                      .|.|||..+.+.++   .+.+ |...|.+++|.  +.  .+.+|+.|+.|..+|++..+.... +.+|...|..+.|++ 
T Consensus       240 ~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~-  311 (484)
T KOG0305|consen  240 TVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP-  311 (484)
T ss_pred             eEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC-
Confidence            99999999877665   5777 99999999998  44  689999999999999998877665 889999999999965 


Q ss_pred             CCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcC-CCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCC
Q 001163          519 ENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSAD-GARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG  597 (1134)
Q Consensus       519 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~  597 (1134)
                       ++.++++|+.|+.+.|||.........+..|...|.+++|+|- ...||+|+.  ..+.+|++||..+++.+.......
T Consensus       312 -d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdtgs  388 (484)
T KOG0305|consen  312 -DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDTGS  388 (484)
T ss_pred             -CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEecccccCC
Confidence             5589999999999999999888899999999999999999995 456777764  557889999999999988776654


Q ss_pred             CCceEEEEEcCCCCEEEEEe--CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163          598 KRSVGVVQFDTTKNRFLAAG--DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       598 ~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                        .|..+.|++..+.|+++.  .++.|.||++.+.+.+..+.+|  ...|..++++|||..+++|+.|.++++|++-+.
T Consensus       389 --QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH--~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  389 --QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGH--TSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             --ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCC--cceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence              799999999998777754  6779999999999999988866  778999999999999999999999999998653

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=5.6e-25  Score=216.48  Aligned_cols=289  Identities=15%  Similarity=0.190  Sum_probs=229.7

Q ss_pred             ccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC
Q 001163          775 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN  854 (1134)
Q Consensus       775 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d  854 (1134)
                      ....|.++.|+++|..+++++.|-++++|+...                      |..+.. +..  +...+..++|...
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~----------------------g~~~~t-i~s--kkyG~~~~~Fth~   67 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLS----------------------GKQVKT-INS--KKYGVDLACFTHH   67 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCC----------------------CceeeE-eec--ccccccEEEEecC
Confidence            467899999999999999999999999996553                      332222 111  5567888888877


Q ss_pred             CCeEEEee---CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceE
Q 001163          855 DSYVMSAS---GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRIT  931 (1134)
Q Consensus       855 g~~la~~s---dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~  931 (1134)
                      ...++.++   |.+|+..++.+.+.++-+.||...|+.++.+| .+..+++++.|++|++||++..++...+..-..+  
T Consensus        68 ~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--  144 (311)
T KOG1446|consen   68 SNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--  144 (311)
T ss_pred             CceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCCc--
Confidence            77666665   67899999999999999999999999999999 7789999999999999999987776665543333  


Q ss_pred             EEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-eeceEEEEeCCCccc
Q 001163          932 GLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLEC 1010 (1134)
Q Consensus       932 ~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~iwd~~~~~~ 1010 (1134)
                      .+||.|+|-++|++.....|++||+..-.........+..+..   ...+.+.|||||++++.+ ..+.+++.|.-+|..
T Consensus       145 i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~---~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~  221 (311)
T KOG1446|consen  145 IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDE---AEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV  221 (311)
T ss_pred             ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCc---cceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE
Confidence            4789999999999988889999999887666655555554333   468999999999999985 668899999999998


Q ss_pred             ceeeccCCCcc-CEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEE
Q 001163         1011 LKQFVPREASG-PITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFAL 1089 (1134)
Q Consensus      1011 ~~~~~~~~h~~-~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s 1089 (1134)
                      ...+....... --.+.+|+||++++++|+.||+|.+|++++|..+.++...      +.+.+..+  .|+|   .+...
T Consensus       222 ~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~------~~~~~~~~--~fnP---~~~mf  290 (311)
T KOG1446|consen  222 KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP------NGGPVSCV--RFNP---RYAMF  290 (311)
T ss_pred             eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC------CCCCcccc--ccCC---ceeee
Confidence            88876322222 2267899999999999999999999999999999887743      23444444  6877   46666


Q ss_pred             EecCCcEEEEeCCCCC
Q 001163         1090 GLTDGGVYIIEPLEAE 1105 (1134)
Q Consensus      1090 ~~~Dg~v~vW~~~~~~ 1105 (1134)
                      ++.+..+-+|-+...+
T Consensus       291 ~sa~s~l~fw~p~~~~  306 (311)
T KOG1446|consen  291 VSASSNLVFWLPDEDA  306 (311)
T ss_pred             eecCceEEEEeccccc
Confidence            6777789999877655

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2e-25  Score=218.06  Aligned_cols=241  Identities=20%  Similarity=0.268  Sum_probs=208.3

Q ss_pred             CCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCc--EEEEEeCCCcEEEEEccc
Q 001163          840 TNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN--IIAIGMEDSSIQIYNVRV  916 (1134)
Q Consensus       840 ~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~--~la~g~~dg~i~iwd~~~  916 (1134)
                      ..|.++++++|+  ++.++|+|+ |.+|+|||+.+...+..+-.|.+.|+++.|.+ +..  .|.+|+.||.|.+|+...
T Consensus        40 ~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~  116 (362)
T KOG0294|consen   40 SAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGS  116 (362)
T ss_pred             cccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCC
Confidence            359999999998  688999999 99999999999999999999999999999998 554  899999999999999999


Q ss_pred             ceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEe
Q 001163          917 DEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVH  996 (1134)
Q Consensus       917 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~  996 (1134)
                      .+++..+++|.+.|+.++++|.+++-++.+.|+.++.||+-+|+...  ++.+..       ..+.+.|+|.|.+++++.
T Consensus       117 W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~--v~~L~~-------~at~v~w~~~Gd~F~v~~  187 (362)
T KOG0294|consen  117 WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF--VLNLKN-------KATLVSWSPQGDHFVVSG  187 (362)
T ss_pred             eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccce--eeccCC-------cceeeEEcCCCCEEEEEe
Confidence            99999999999999999999999999999999999999999987432  222211       135599999999999988


Q ss_pred             eceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEE
Q 001163          997 ETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLV 1076 (1134)
Q Consensus       997 d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 1076 (1134)
                      ...|-||.+.+......+..   ...+.++.|- ++.+|++|.+|+.|.+||.+++.+.+.+.       +|..+|..+.
T Consensus       188 ~~~i~i~q~d~A~v~~~i~~---~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~-------AH~~RVK~i~  256 (362)
T KOG0294|consen  188 RNKIDIYQLDNASVFREIEN---PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL-------AHENRVKDIA  256 (362)
T ss_pred             ccEEEEEecccHhHhhhhhc---cccceeeeec-CCceEEEecCCceEEEeccCCCccceeee-------cchhheeeeE
Confidence            89999999998887777652   3456777775 78889999999999999999987776666       6889999986


Q ss_pred             EEecCCCCCEEEEEecCCcEEEEeCCCC
Q 001163         1077 IAGNPTDPNQFALGLTDGGVYIIEPLEA 1104 (1134)
Q Consensus      1077 ~~~~p~~~~~l~s~~~Dg~v~vW~~~~~ 1104 (1134)
                      .--.| ++.+|+++|.||.|++||+...
T Consensus       257 ~~~~~-~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  257 SYTNP-EHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             EEecC-CceEEEEeccCceEEEEEcccc
Confidence            54455 6899999999999999999876

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=1.3e-26  Score=234.19  Aligned_cols=253  Identities=16%  Similarity=0.246  Sum_probs=213.7

Q ss_pred             cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163          414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD  493 (1134)
Q Consensus       414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd  493 (1134)
                      +..|.+.|..+.|-++...|++|+.|..|++|++..++ .....+|.|-.++|+.+.|.++++  .+++.+.|+.+++|+
T Consensus       171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn  247 (459)
T KOG0288|consen  171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN  247 (459)
T ss_pred             hhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence            57799999999999999999999999999999998876 334447888899999999999999  799999999999999


Q ss_pred             CCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCC
Q 001163          494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK  573 (1134)
Q Consensus       494 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~  573 (1134)
                      +...+...++.||++.|+++.|....  ..+++|+.|.+|+.||+....+...+. ....+..++.+  ...++++..| 
T Consensus       248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~D-  321 (459)
T KOG0288|consen  248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFD-  321 (459)
T ss_pred             ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccc-
Confidence            99999999999999999999986554  349999999999999998766555433 23455555555  4455666554 


Q ss_pred             CCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCC--CCCcceEEEc
Q 001163          574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGG--LQASPCIRFN  651 (1134)
Q Consensus       574 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~~s  651 (1134)
                         ..|+.||.++..+......+.  .|+++..++++..+.+++.|.++.+.|+++.+....+...+.  ....+.+.||
T Consensus       322 ---kkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS  396 (459)
T KOG0288|consen  322 ---KKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS  396 (459)
T ss_pred             ---cceEEEeccCCceeeEeecCc--ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC
Confidence               359999999999999888776  799999999999999999999999999999998888765432  2347899999


Q ss_pred             CCCcEEEEEECCCcEEEEEccCCceeEEEe
Q 001163          652 KEGILLAVSTNDNGIKILANADGIRLLRTV  681 (1134)
Q Consensus       652 p~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  681 (1134)
                      |++.|+++|+.||.|+||++.++ .+...+
T Consensus       397 pd~~YvaAGS~dgsv~iW~v~tg-KlE~~l  425 (459)
T KOG0288|consen  397 PDGSYVAAGSADGSVYIWSVFTG-KLEKVL  425 (459)
T ss_pred             CCCceeeeccCCCcEEEEEccCc-eEEEEe
Confidence            99999999999999999999887 444433

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.4e-26  Score=221.58  Aligned_cols=297  Identities=15%  Similarity=0.224  Sum_probs=243.1

Q ss_pred             ceeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEE
Q 001163          347 KTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM  425 (1134)
Q Consensus       347 ~~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  425 (1134)
                      ..+++.+. |.++|+.++-..... ++.+++.|.+.+||.+++|.++..                   +.||.+.|++++
T Consensus       138 ~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsik  197 (481)
T KOG0300|consen  138 FRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIK  197 (481)
T ss_pred             EeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEE
Confidence            45555555 999999999988777 889999999999999999998875                   789999999999


Q ss_pred             EcCCCCEEEEEeCCCEEEEEEc------cC--------C-----------------------ceeeeeeeeecCCCCEEE
Q 001163          426 WSPDGTLFGVAYSKHIVHLYTY------HG--------G-----------------------DELRNHLEIEAHVGSVND  468 (1134)
Q Consensus       426 ~spd~~~las~s~dg~v~iwd~------~~--------~-----------------------~~~~~~~~l~~h~~~V~~  468 (1134)
                      |++.+.++++++.|++.+||..      ..        +                       ....+...|.+|.+.|.+
T Consensus       198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a  277 (481)
T KOG0300|consen  198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA  277 (481)
T ss_pred             eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence            9999999999999999999972      11        0                       001134468899999999


Q ss_pred             EEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCC-Cceeee
Q 001163          469 LAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL-GSRVDY  547 (1134)
Q Consensus       469 v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~  547 (1134)
                      +.|...|+  -+++++.|.+..+||+++|+.+..+.||....+.++-+|..  .++++.+.|.+.++||++.. .....+
T Consensus       278 ~dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ--rLVvTsSrDtTFRLWDFReaI~sV~VF  353 (481)
T KOG0300|consen  278 CDWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ--RLVVTSSRDTTFRLWDFREAIQSVAVF  353 (481)
T ss_pred             hhhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCcc--eEEEEeccCceeEeccchhhcceeeee
Confidence            99999999  58999999999999999999999999999999999887655  89999999999999999843 334567


Q ss_pred             cCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC-eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001163          548 DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD  626 (1134)
Q Consensus       548 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  626 (1134)
                      .+|...|++..|..+.+ +++++.    +.+|++||++.. .++.++....  +++.++.+..+..++.--++..|++||
T Consensus       354 QGHtdtVTS~vF~~dd~-vVSgSD----DrTvKvWdLrNMRsplATIRtdS--~~NRvavs~g~~iIAiPhDNRqvRlfD  426 (481)
T KOG0300|consen  354 QGHTDTVTSVVFNTDDR-VVSGSD----DRTVKVWDLRNMRSPLATIRTDS--PANRVAVSKGHPIIAIPHDNRQVRLFD  426 (481)
T ss_pred             cccccceeEEEEecCCc-eeecCC----CceEEEeeeccccCcceeeecCC--ccceeEeecCCceEEeccCCceEEEEe
Confidence            88888999999987764 666664    446999999876 4556665543  788899998888888888999999999


Q ss_pred             cCCCceeEEE--ecCCCCCCcceEEEcCCC--cEEEEEECCCcEEEEEccCC
Q 001163          627 MDNVNLLASI--DADGGLQASPCIRFNKEG--ILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       627 ~~~~~~~~~~--~~~~~~~~v~~v~~sp~~--~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      +...++-..-  ...+|...|.|++|..+.  .-|++++.|..+.-|.+...
T Consensus       427 lnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  427 LNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             cCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            9765433222  234567789999998654  45788999999999998654

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=4.8e-25  Score=250.43  Aligned_cols=262  Identities=15%  Similarity=0.215  Sum_probs=202.5

Q ss_pred             cccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCccccc--CCCCCCCCCCeeEEEEcC
Q 001163          776 AMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTN--DISDTNPEDAVPCFALSK  853 (1134)
Q Consensus       776 ~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~h~~~v~~v~~s~  853 (1134)
                      ...|....+++|+..+++++.+.....|+.....            ..++....|+....  .+.  +|.+.|.+++|+|
T Consensus        20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~------------~v~~~~~~G~~~~~~~~l~--GH~~~V~~v~fsP   85 (493)
T PTZ00421         20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGST------------AVLKHTDYGKLASNPPILL--GQEGPIIDVAFNP   85 (493)
T ss_pred             eeccccccccCCCCCcEeECCceEEEEEecCCce------------EEeeccccccCCCCCceEe--CCCCCEEEEEEcC
Confidence            4456666778888888888888888888654310            11223334443221  133  4999999999999


Q ss_pred             -CCCeEEEee-CCeEEEEEccCC-------eEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEecc
Q 001163          854 -NDSYVMSAS-GGKISLFNMMTF-------KTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK  924 (1134)
Q Consensus       854 -dg~~la~~s-dg~i~lwd~~~~-------~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~  924 (1134)
                       ++++|++++ |++|++||+.++       +.+..+.+|...|.+++|+|+++.+|++|+.|++|+|||+.+++.+..+.
T Consensus        86 ~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~  165 (493)
T PTZ00421         86 FDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK  165 (493)
T ss_pred             CCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc
Confidence             889999998 999999999764       35678899999999999999445799999999999999999999999999


Q ss_pred             CccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-E----eece
Q 001163          925 GHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-V----HETQ  999 (1134)
Q Consensus       925 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~----~d~~  999 (1134)
                      +|...|.+++|+|+|.+|++++.|++|++||+.+++.     +....+|..  .....+.|.+++..+++ +    .|++
T Consensus       166 ~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~-----v~tl~~H~~--~~~~~~~w~~~~~~ivt~G~s~s~Dr~  238 (493)
T PTZ00421        166 CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI-----VSSVEAHAS--AKSQRCLWAKRKDLIITLGCSKSQQRQ  238 (493)
T ss_pred             CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE-----EEEEecCCC--CcceEEEEcCCCCeEEEEecCCCCCCe
Confidence            9999999999999999999999999999999988652     222333432  23456789998888776 3    3689


Q ss_pred             EEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEe-cCCcEEEeecCCCcceeec
Q 001163         1000 IAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAF-EEGSVGVLTASTLRLRCRI 1058 (1134)
Q Consensus      1000 i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s-~Dg~i~vwd~~~~~~~~~~ 1058 (1134)
                      |++||+.+...........+...+....|++|+.+|++++ .|+.|++||+.+++++...
T Consensus       239 VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~  298 (493)
T PTZ00421        239 IMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS  298 (493)
T ss_pred             EEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence            9999998765433222123345677788999999999887 5999999999998876544

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=2.8e-25  Score=216.64  Aligned_cols=307  Identities=18%  Similarity=0.225  Sum_probs=224.8

Q ss_pred             CCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCC
Q 001163          640 GGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGER  719 (1134)
Q Consensus       640 ~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  719 (1134)
                      +|...|++++|+.||++|++++.|++|++|++.+-.     .+.|.                                  
T Consensus        84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~-----~~eHr----------------------------------  124 (420)
T KOG2096|consen   84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFE-----NKEHR----------------------------------  124 (420)
T ss_pred             ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhh-----hhhhh----------------------------------
Confidence            557799999999999999999999999999987531     01110                                  


Q ss_pred             CcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeec-cCC
Q 001163          720 TAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALA-SNA  798 (1134)
Q Consensus       720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~-~dg  798 (1134)
                                                    .++               ...    ..+..+.+.|+||-+.+++.. ...
T Consensus       125 ------------------------------~~R---------------~nv----e~dhpT~V~FapDc~s~vv~~~~g~  155 (420)
T KOG2096|consen  125 ------------------------------CIR---------------QNV----EYDHPTRVVFAPDCKSVVVSVKRGN  155 (420)
T ss_pred             ------------------------------Hhh---------------ccc----cCCCceEEEECCCcceEEEEEccCC
Confidence                                          000               000    223567889999987665544 467


Q ss_pred             eEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEE
Q 001163          799 VHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM  877 (1134)
Q Consensus       799 ~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~  877 (1134)
                      .+++|.+....-   |..  +....-||-.  .     +. ..|.-.+..+-...+++++++++ |.+|.+|++. |+.+
T Consensus       156 ~l~vyk~~K~~d---G~~--~~~~v~~D~~--~-----f~-~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L  221 (420)
T KOG2096|consen  156 KLCVYKLVKKTD---GSG--SHHFVHIDNL--E-----FE-RKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLL  221 (420)
T ss_pred             EEEEEEeeeccc---CCC--Cccccccccc--c-----cc-hhcccceEEEeecCCceEEEEecCCCcEEEEecC-Ccee
Confidence            899998764321   110  0011112200  0     11 02566777788888999999999 8889999997 8999


Q ss_pred             EEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEccc---c-----eEEEeccCccCceEEEEEeeCCCEEEEEeCCC
Q 001163          878 TTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV---D-----EVKTKLKGHQKRITGLAFSNTLNVLVSSGADS  949 (1134)
Q Consensus       878 ~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~---~-----~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg  949 (1134)
                      ..+......-+..+.|| +|+++|+++..-.|+||++--   |     ..+..++||.+.|.+++||++...++|.+.||
T Consensus       222 ~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG  300 (420)
T KOG2096|consen  222 QSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG  300 (420)
T ss_pred             eeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCC
Confidence            99887777788899999 999999999999999999742   2     23467889999999999999999999999999


Q ss_pred             cEEEEECCCCcc--ccceeeeecC-CCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEE
Q 001163          950 QLCVWSTDGWEK--QASKFLTIPN-GRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHA 1026 (1134)
Q Consensus       950 ~i~iwd~~~~~~--~~~~~~~~~~-~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~ 1026 (1134)
                      +++|||++-.-.  +....++... ......+....++++|.|+.||++...++.+|..++|+....+. ..|+..|+++
T Consensus       301 ~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e-~~h~~~Is~i  379 (420)
T KOG2096|consen  301 KWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELE-DIHSTTISSI  379 (420)
T ss_pred             cEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHH-HhhcCceeeE
Confidence            999999763111  1111222211 00111134458999999999999999999999999998877776 4689999999


Q ss_pred             EEccCCCEEEEEecCCcEEEeecCC
Q 001163         1027 TYSCDSQSIYVAFEEGSVGVLTAST 1051 (1134)
Q Consensus      1027 ~~s~dg~~l~s~s~Dg~i~vwd~~~ 1051 (1134)
                      +|++||++++|++ |..++++.-..
T Consensus       380 s~~~~g~~~atcG-dr~vrv~~ntp  403 (420)
T KOG2096|consen  380 SYSSDGKYIATCG-DRYVRVIRNTP  403 (420)
T ss_pred             EecCCCcEEeeec-ceeeeeecCCC
Confidence            9999999999997 67888876433

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=1.7e-25  Score=229.80  Aligned_cols=286  Identities=16%  Similarity=0.244  Sum_probs=230.8

Q ss_pred             eecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeec----cccCccccccccccCCCCEEEEEEcC
Q 001163          353 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWEL----GACSMPLQASLSSDYTASVNRVMWSP  428 (1134)
Q Consensus       353 ~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~V~~l~~sp  428 (1134)
                      -.|.-.|+||+++||+++. .+++.||+|.=|++.+|+....    +|..    +....+....- .+|...|.+++.|+
T Consensus       139 ~~H~~s~~~vals~d~~~~-fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~  212 (479)
T KOG0299|consen  139 GKHQLSVTSVALSPDDKRV-FSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTLAVSS  212 (479)
T ss_pred             ccccCcceEEEeeccccce-eecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEEEEcC
Confidence            3499999999999999964 7999999999999999985521    1221    11222222222 48999999999999


Q ss_pred             CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCc
Q 001163          429 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES  508 (1134)
Q Consensus       429 d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~  508 (1134)
                      ||+|||+|+.|..|.||+..+.+.++   .+.+|.+.|.+++|-....  -+++++.|++|++|+++....+.++.+|++
T Consensus       213 Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyGHqd  287 (479)
T KOG0299|consen  213 DGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYGHQD  287 (479)
T ss_pred             CCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhCCcc
Confidence            99999999999999999999988666   6899999999999987666  589999999999999999999999999999


Q ss_pred             CEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCe
Q 001163          509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA  588 (1134)
Q Consensus       509 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~  588 (1134)
                      .|.+|......  ..+-.|+.|+++++|++. ......+.++.+.+.+++|-.+ ..+++|+.++    .|.+|++.+.+
T Consensus       288 ~v~~IdaL~re--R~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~-~HfvsGSdnG----~IaLWs~~KKk  359 (479)
T KOG0299|consen  288 GVLGIDALSRE--RCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIND-EHFVSGSDNG----SIALWSLLKKK  359 (479)
T ss_pred             ceeeechhccc--ceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecc-cceeeccCCc----eEEEeeecccC
Confidence            99999764333  556666799999999994 4566677777778889988654 5678887644    59999999999


Q ss_pred             eEEEecCCCC-----------CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC----ceeEEEecCCCCCCcceEEEcCC
Q 001163          589 VKRTYHGLGK-----------RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV----NLLASIDADGGLQASPCIRFNKE  653 (1134)
Q Consensus       589 ~~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~~sp~  653 (1134)
                      ++.+....+.           ..|++++..|..+.+++|+.+|.|++|-+..+    +++..+..   .+.|++++|+++
T Consensus       360 plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~---~GfVNsl~f~~s  436 (479)
T KOG0299|consen  360 PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL---VGFVNSLAFSNS  436 (479)
T ss_pred             ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc---ccEEEEEEEccC
Confidence            8887643221           16788999999999999999999999998877    44555543   567999999999


Q ss_pred             CcEEEEE
Q 001163          654 GILLAVS  660 (1134)
Q Consensus       654 ~~~l~~~  660 (1134)
                      |+.+++|
T Consensus       437 gk~ivag  443 (479)
T KOG0299|consen  437 GKRIVAG  443 (479)
T ss_pred             CCEEEEe
Confidence            9966665

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=7.1e-26  Score=234.65  Aligned_cols=297  Identities=15%  Similarity=0.206  Sum_probs=224.0

Q ss_pred             ccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEc
Q 001163          773 NLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALS  852 (1134)
Q Consensus       773 ~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s  852 (1134)
                      ..|...|.++++.|.|.++++|+-|..|++||+..-..                 .-.. .....+.  ....|..+.|+
T Consensus       164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMda-----------------s~~~-fr~l~P~--E~h~i~sl~ys  223 (641)
T KOG0772|consen  164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDA-----------------SMRS-FRQLQPC--ETHQINSLQYS  223 (641)
T ss_pred             cCCceEEEEeeecCCCceeeeccccceEEEEecccccc-----------------cchh-hhccCcc--cccccceeeec
Confidence            34788999999999999999999999999999874211                 1111 1111222  56789999999


Q ss_pred             CCCCeEEEee-CCeEEEEEccCCeEEEEe------------cCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccce-
Q 001163          853 KNDSYVMSAS-GGKISLFNMMTFKTMTTF------------MPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE-  918 (1134)
Q Consensus       853 ~dg~~la~~s-dg~i~lwd~~~~~~~~~~------------~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~-  918 (1134)
                      +.|..+++.+ ....+|+|....+.....            ++|...++|.+|+|+....+.+++.||++|||++..-+ 
T Consensus       224 ~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~  303 (641)
T KOG0772|consen  224 VTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS  303 (641)
T ss_pred             CCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh
Confidence            9999888887 678999998665444333            46888999999999888899999999999999997542 


Q ss_pred             EEEec-----cCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEE
Q 001163          919 VKTKL-----KGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLL  993 (1134)
Q Consensus       919 ~~~~l-----~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~  993 (1134)
                      .+..+     .+-.-+++.++|++||+++|.|+.||.|.+|+..+.....  ...+...|.. ...|+++.||+||++|+
T Consensus       304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p--~~~vk~AH~~-g~~Itsi~FS~dg~~Ll  380 (641)
T KOG0772|consen  304 QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRP--VMKVKDAHLP-GQDITSISFSYDGNYLL  380 (641)
T ss_pred             heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccccc--ceEeeeccCC-CCceeEEEeccccchhh
Confidence            22222     2334568899999999999999999999999985533222  3334444442 14699999999999999


Q ss_pred             E-EeeceEEEEeCCCcc-cceeeccCCCccCEEEEEEccCCCEEEEEec------CCcEEEeecCCCcceeecCCCcccC
Q 001163          994 A-VHETQIAIYEAPKLE-CLKQFVPREASGPITHATYSCDSQSIYVAFE------EGSVGVLTASTLRLRCRINPTAYLP 1065 (1134)
Q Consensus       994 ~-~~d~~i~iwd~~~~~-~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~------Dg~i~vwd~~~~~~~~~~~~~~~~~ 1065 (1134)
                      + +.|+++++||+...+ ++..+..-...-.-+.++||||.++|++|+.      -|++.+||..+...+.++....   
T Consensus       381 SRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~---  457 (641)
T KOG0772|consen  381 SRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIST---  457 (641)
T ss_pred             hccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCC---
Confidence            9 899999999998654 4444432222446678999999999999874      4689999999988887776332   


Q ss_pred             CCCCCCceeEEEEecCCCCCEEEEEecCCcEEEE-eCC
Q 001163         1066 TNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYII-EPL 1102 (1134)
Q Consensus      1066 ~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW-~~~ 1102 (1134)
                            ...+.+.|+| .-+.|.+|+.||+++++ |..
T Consensus       458 ------aSvv~~~Whp-kLNQi~~gsgdG~~~vyYdp~  488 (641)
T KOG0772|consen  458 ------ASVVRCLWHP-KLNQIFAGSGDGTAHVYYDPN  488 (641)
T ss_pred             ------ceEEEEeecc-hhhheeeecCCCceEEEECcc
Confidence                  2344569999 46778889999998865 444

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.1e-23  Score=234.29  Aligned_cols=564  Identities=13%  Similarity=0.148  Sum_probs=353.9

Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCc-eEEEEEeCCCeEEEEEC
Q 001163          416 DYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQ-LSVVTCGEDRVIKVWDA  494 (1134)
Q Consensus       416 ~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~-~~l~s~s~d~~i~iwd~  494 (1134)
                      |-...-..-.||+|+++++....+ .|.||...+|.++.   .+.+|..++..+.+.|.... .++++++.||.|++||.
T Consensus        14 g~n~~~~~avfSnD~k~l~~~~~~-~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~   89 (792)
T KOG1963|consen   14 GRNGNKSPAVFSNDAKFLFLCTGN-FVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDW   89 (792)
T ss_pred             cccceecccccccCCcEEEEeeCC-EEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecC
Confidence            333333446789999999888655 69999999999877   79999999999999987663 47889999999999999


Q ss_pred             CCCceeEEecCCCcCEEEEecccc--CCccEEEEecCCCc------------EEEEecCCCCc-eeeecCCCCCeeEEEE
Q 001163          495 VTGTKQYIFEGHESPVYSICPHHK--ENIQFIFSTATDGK------------IKAWLYDNLGS-RVDYDAPGHSSTMMAY  559 (1134)
Q Consensus       495 ~~~~~~~~~~~h~~~v~~~~~~~~--~~~~~l~s~s~dg~------------i~vwd~~~~~~-~~~~~~~~~~v~~~~~  559 (1134)
                      ..+..++++..+- ++..+.+.+.  .....+..+..|..            ++-+.+.+... ...+......-..+.+
T Consensus        90 ~~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~  168 (792)
T KOG1963|consen   90 SDGELLKTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVD  168 (792)
T ss_pred             CCcEEEEEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEE
Confidence            9999998887432 3333322110  00011111111111            11111111000 0000001111356778


Q ss_pred             CcCCCEEEEEecCCCCCeEEEEEeCCCCeeE---EEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC--CceeE
Q 001163          560 SADGARLFSCGTNKEGESYLVEWNESEGAVK---RTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN--VNLLA  634 (1134)
Q Consensus       560 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~  634 (1134)
                      ++.|.....+-..     .+.+|+..+....   +....++...+.+.+++|.+++++++..||.|.+|.--.  +....
T Consensus       169 ~~~ge~~~i~~~~-----~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t  243 (792)
T KOG1963|consen  169 NNSGEFKGIVHMC-----KIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSET  243 (792)
T ss_pred             cCCceEEEEEEee-----eEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccccc
Confidence            8888877776533     3888988875411   112223333578899999999999999999999996433  33222


Q ss_pred             EEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhccccccccccccccccc
Q 001163          635 SIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGT  714 (1134)
Q Consensus       635 ~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  714 (1134)
                      .-..|-|...|.+++|+++|.+|++|+..|.+.+|.+.++.   +++..                               
T Consensus       244 ~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~---kqfLP-------------------------------  289 (792)
T KOG1963|consen  244 CTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK---KQFLP-------------------------------  289 (792)
T ss_pred             ceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC---ccccc-------------------------------
Confidence            22334557799999999999999999999999999998873   11111                               


Q ss_pred             CcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeee
Q 001163          715 SLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILAL  794 (1134)
Q Consensus       715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~  794 (1134)
                                                                               .  -...|..+.+|||+......
T Consensus       290 ---------------------------------------------------------R--Lgs~I~~i~vS~ds~~~sl~  310 (792)
T KOG1963|consen  290 ---------------------------------------------------------R--LGSPILHIVVSPDSDLYSLV  310 (792)
T ss_pred             ---------------------------------------------------------c--cCCeeEEEEEcCCCCeEEEE
Confidence                                                                     0  24678899999999999999


Q ss_pred             ccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC-CCeEEEeeCCeEEEEEccC
Q 001163          795 ASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN-DSYVMSASGGKISLFNMMT  873 (1134)
Q Consensus       795 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d-g~~la~~sdg~i~lwd~~~  873 (1134)
                      ..|..|.+-....-.      ...  ++.-....+.....      ...+-.+.++++|- +..+..+-.|.|.+||+.+
T Consensus       311 ~~DNqI~li~~~dl~------~k~--tIsgi~~~~~~~k~------~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~t  376 (792)
T KOG1963|consen  311 LEDNQIHLIKASDLE------IKS--TISGIKPPTPSTKT------RPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYT  376 (792)
T ss_pred             ecCceEEEEeccchh------hhh--hccCccCCCccccc------cccccceeEEEcCCCCceeecCCCceEEEEeccc
Confidence            999999987654210      000  00000011000000      13455678899994 4444445589999999988


Q ss_pred             CeEEEEecC-----CC------CCeEEEEEcCCCCcEEEEEe--------CCC--cEEEEEcccce----EE-EeccCcc
Q 001163          874 FKTMTTFMP-----PP------PAATFLAFHPQDNNIIAIGM--------EDS--SIQIYNVRVDE----VK-TKLKGHQ  927 (1134)
Q Consensus       874 ~~~~~~~~~-----~~------~~v~~l~~sp~~~~~la~g~--------~dg--~i~iwd~~~~~----~~-~~l~~h~  927 (1134)
                      -+.+..+..     +.      -.+++++.+. .|.+++|+-        .||  .++.|-.....    +. .....|.
T Consensus       377 d~~i~~~~v~~~n~~~~~~n~~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~  455 (792)
T KOG1963|consen  377 DSTIYKLQVCDENYSDGDVNIQVGITAVARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHG  455 (792)
T ss_pred             cceeeeEEEEeecccCCcceeEEeeeeehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCC
Confidence            776665431     22      2478888888 688998873        233  57778765432    22 2234588


Q ss_pred             CceEEEEEeeC-C-CEEEEEeCCCcEEEEECCCCcc-----ccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceE
Q 001163          928 KRITGLAFSNT-L-NVLVSSGADSQLCVWSTDGWEK-----QASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQI 1000 (1134)
Q Consensus       928 ~~V~~l~~s~d-~-~~l~s~s~Dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i 1000 (1134)
                      ..+...+|.+. . .+.+|++.||.++||-+...+.     ..+.+..+...+.   .+++.++||.||..|+++.+++|
T Consensus       456 ~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k---~~i~a~~fs~dGslla~s~~~~I  532 (792)
T KOG1963|consen  456 NAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK---TPITALCFSQDGSLLAVSFDDTI  532 (792)
T ss_pred             ceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecccc---CcccchhhcCCCcEEEEecCCEE
Confidence            77777666543 2 3799999999999999844322     1233444433333   47899999999999999999999


Q ss_pred             EEEeCCCc-ccceeeccCCCccCEEEEEEccCCC--EEEEEecCCcEEEeecCCCcceeecCCCcccCC-------CCCC
Q 001163         1001 AIYEAPKL-ECLKQFVPREASGPITHATYSCDSQ--SIYVAFEEGSVGVLTASTLRLRCRINPTAYLPT-------NPSL 1070 (1134)
Q Consensus      1001 ~iwd~~~~-~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~-------~h~~ 1070 (1134)
                      .+||..+. +......  .-..++..++|.....  ..+.......+.+|++.+..+...+...-.+-.       ...+
T Consensus       533 tiwd~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~w~~s~~~~i~~~~~~~~~~~~s  610 (792)
T KOG1963|consen  533 TIWDYDTKNELLCTEG--SRNWPIAELLFTAQTQNDGALVHATQQRLSVWNLLSMSLIWNLSLSLRIEGVHVDRAADGDS  610 (792)
T ss_pred             EEecCCChhhhhcccc--ccccchHhHhhhcccccccceeeccCceEehHhhhhhheecchhhhhhhhcchhhhhhcccc
Confidence            99999884 3222222  1133444444433211  122334567899999999887763332211111       1111


Q ss_pred             CceeE---EEEecCCCCCEEE--------EEecCCcEEEEeCCCCC
Q 001163         1071 RVYPL---VIAGNPTDPNQFA--------LGLTDGGVYIIEPLEAE 1105 (1134)
Q Consensus      1071 ~v~~~---~~~~~p~~~~~l~--------s~~~Dg~v~vW~~~~~~ 1105 (1134)
                      .+-+.   .++|.|   ..+.        ..+.|+.|.+++.+.++
T Consensus       611 ~v~s~~f~vi~~~p---~~~~~~k~~~~~f~~~~~ril~F~~~~pk  653 (792)
T KOG1963|consen  611 SVGSTAFAVICWLP---ELLLVVKSIEQIFRGRDSRILIFSGDSPK  653 (792)
T ss_pred             ccCccceEEEeecc---cchhhhhhhhhhcccccceEEEecCCCch
Confidence            22121   234444   3333        77888889999888777

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=1.6e-24  Score=246.39  Aligned_cols=256  Identities=10%  Similarity=0.114  Sum_probs=196.8

Q ss_pred             EeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCC-CCEEEEEeCCCEEEEEEccCCce-
Q 001163          375 GTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD-GTLFGVAYSKHIVHLYTYHGGDE-  452 (1134)
Q Consensus       375 gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-~~~las~s~dg~v~iwd~~~~~~-  452 (1134)
                      |+.++.|.+|+......+.                   .+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++.. 
T Consensus        50 GG~~gvI~L~~~~r~~~v~-------------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~  110 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVI-------------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES  110 (568)
T ss_pred             CCceeEEEeeecCCCceEE-------------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence            5566778888776543322                   26899999999999996 89999999999999999986432 


Q ss_pred             e----eeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEec
Q 001163          453 L----RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA  528 (1134)
Q Consensus       453 ~----~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s  528 (1134)
                      .    .....+.+|...|.+++|+|++.. ++++++.|++|+|||+.+++.+..+. |...|.+++|++  +|.+|++++
T Consensus       111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s  186 (568)
T PTZ00420        111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTC  186 (568)
T ss_pred             ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEe
Confidence            1    122357899999999999999874 56899999999999999999888776 667899999865  458999999


Q ss_pred             CCCcEEEEecCCCCceeeecCCCCCeeE-----EEECcCCCEEEEEecCCCCCeEEEEEeCCC-CeeEEEecCCCCCc-e
Q 001163          529 TDGKIKAWLYDNLGSRVDYDAPGHSSTM-----MAYSADGARLFSCGTNKEGESYLVEWNESE-GAVKRTYHGLGKRS-V  601 (1134)
Q Consensus       529 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~-----~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~-v  601 (1134)
                      .|+.|++||++++.....+..|.+.+..     ..|++++.++++++.++..+..|++||++. ++++..+..+.... +
T Consensus       187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L  266 (568)
T PTZ00420        187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPL  266 (568)
T ss_pred             cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccce
Confidence            9999999999998887777777764432     235689999999987765556799999995 56666554433222 2


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCC
Q 001163          602 GVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG  654 (1134)
Q Consensus       602 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~  654 (1134)
                      ......+++.++++|+.|+.|++|++..+. +..+....+..++.+++|.|..
T Consensus       267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        267 IPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             EEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence            233334557888899999999999998764 4444444445678899999965

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=4.8e-26  Score=242.81  Aligned_cols=242  Identities=19%  Similarity=0.237  Sum_probs=205.7

Q ss_pred             EEEEcC-CCCEEEEEeCCCEEEEEEccCCcee---eeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC-
Q 001163          423 RVMWSP-DGTLFGVAYSKHIVHLYTYHGGDEL---RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-  497 (1134)
Q Consensus       423 ~l~~sp-d~~~las~s~dg~v~iwd~~~~~~~---~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-  497 (1134)
                      .+..++ .++||.+||.||.|++|++......   ....+++.|.+.|+.++...+++  .|+|+|.|-+|++|+...+ 
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~  106 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN  106 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence            444443 6788999999999999998654321   12336888999999999999998  6999999999999999888 


Q ss_pred             -ceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCcee----------eec-CCCCCeeEEEECcCCCE
Q 001163          498 -TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV----------DYD-APGHSSTMMAYSADGAR  565 (1134)
Q Consensus       498 -~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~----------~~~-~~~~~v~~~~~s~~~~~  565 (1134)
                       -+..+++.|...|.|+++. ..+..++++|+.|+.|.+||+.++....          .+. ++...|++++.++.|..
T Consensus       107 ~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~  185 (735)
T KOG0308|consen  107 TFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI  185 (735)
T ss_pred             chhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence             5778899999999999983 3444899999999999999998763311          112 45558999999999988


Q ss_pred             EEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCc
Q 001163          566 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQAS  645 (1134)
Q Consensus       566 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v  645 (1134)
                      +++|+..+    .+++||.++++.+..+.+|.. .|..+..++||..+++++.||+|++||+...+++.++..|  ...|
T Consensus       186 ivsGgtek----~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH--~e~V  258 (735)
T KOG0308|consen  186 IVSGGTEK----DLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVH--KEGV  258 (735)
T ss_pred             EEecCccc----ceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEec--cCce
Confidence            88887655    499999999999999999998 8999999999999999999999999999999999998877  5579


Q ss_pred             ceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163          646 PCIRFNKEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       646 ~~v~~sp~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      .++..+|+-..+++|+.||.|..=|+.+.
T Consensus       259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  259 WALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             EEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            99999999999999999999998777664

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=2.6e-25  Score=228.39  Aligned_cols=252  Identities=21%  Similarity=0.275  Sum_probs=212.9

Q ss_pred             cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeee--------------eee-ecCCCCEEEEEEecCCCce
Q 001163          414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNH--------------LEI-EAHVGSVNDLAFSYPNKQL  478 (1134)
Q Consensus       414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~--------------~~l-~~h~~~V~~v~~s~~~~~~  478 (1134)
                      ...|.-+|.|++++||++++++++.|++|.=|++.+|+..+..              ..- .+|...+.+++.++||+  
T Consensus       138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk--  215 (479)
T KOG0299|consen  138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK--  215 (479)
T ss_pred             eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence            4679999999999999999999999999999999988743100              001 37889999999999999  


Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEE
Q 001163          479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMA  558 (1134)
Q Consensus       479 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  558 (1134)
                      +|++|+.|..|.|||.++.+.++.+.+|.+.|.+++|-...  ..+++++.|++|++|+++.......+-+|...|..+.
T Consensus       216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id  293 (479)
T KOG0299|consen  216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID  293 (479)
T ss_pred             EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence            89999999999999999999999999999999999996555  6799999999999999998888888889999999998


Q ss_pred             ECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEec
Q 001163          559 YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA  638 (1134)
Q Consensus       559 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  638 (1134)
                      ...-++.+-+++.|+    ++++|++.. +....|.++.. .+.+++|-.+ ..+++|+++|.|.+|++.+.+++.+...
T Consensus       294 aL~reR~vtVGgrDr----T~rlwKi~e-esqlifrg~~~-sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~  366 (479)
T KOG0299|consen  294 ALSRERCVTVGGRDR----TVRLWKIPE-ESQLIFRGGEG-SIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRL  366 (479)
T ss_pred             hhcccceEEeccccc----eeEEEeccc-cceeeeeCCCC-CeeeEEEecc-cceeeccCCceEEEeeecccCceeEeec
Confidence            888888777776644    699999943 33335666654 7888888654 6899999999999999999998877643


Q ss_pred             -CC---------CCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCce
Q 001163          639 -DG---------GLQASPCIRFNKEGILLAVSTNDNGIKILANADGIR  676 (1134)
Q Consensus       639 -~~---------~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~  676 (1134)
                       |+         +...|++++..|...++++|+.+|.|++|-+.++.+
T Consensus       367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r  414 (479)
T KOG0299|consen  367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR  414 (479)
T ss_pred             cccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc
Confidence             11         112688999999999999999999999999988844

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=6.7e-25  Score=223.06  Aligned_cols=285  Identities=15%  Similarity=0.199  Sum_probs=245.5

Q ss_pred             CCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001163          356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV  435 (1134)
Q Consensus       356 ~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las  435 (1134)
                      ...|+++...|... .+.+|+.|..+.++|...++.+..                   +.||...|+.+.|+|+...+++
T Consensus       219 ~pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~  278 (506)
T KOG0289|consen  219 TPGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVIT  278 (506)
T ss_pred             CCCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheee
Confidence            35788888888744 568999999999999999887763                   8999999999999999999999


Q ss_pred             EeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecC--CCcCEEEE
Q 001163          436 AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG--HESPVYSI  513 (1134)
Q Consensus       436 ~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~--h~~~v~~~  513 (1134)
                      ++.|..|+||......+..   ....|.++|+.+..+|.|.  ||++++.|++..+.|+++|.++.....  ..-.+++.
T Consensus       279 aSad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~  353 (506)
T KOG0289|consen  279 ASADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSA  353 (506)
T ss_pred             cCCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEe
Confidence            9999999999998766433   5778999999999999999  899999999999999999998876653  23457888


Q ss_pred             eccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEe
Q 001163          514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTY  593 (1134)
Q Consensus       514 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~  593 (1134)
                      +|+|  ||.++.+|..|+.|++||+........+.+|.++|..++|+.+|-+|++++.|+    .|++||++.-+...++
T Consensus       354 ~fHp--DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~----~V~lwDLRKl~n~kt~  427 (506)
T KOG0289|consen  354 AFHP--DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDG----SVKLWDLRKLKNFKTI  427 (506)
T ss_pred             eEcC--CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCC----eEEEEEehhhccccee
Confidence            8875  458999999999999999999998889999999999999999999999998654    4999999999888888


Q ss_pred             cCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEc
Q 001163          594 HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN  671 (1134)
Q Consensus       594 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~  671 (1134)
                      .......+.+++|.+.|.+|+.++.|=.|++++-.+.+.......+.+.+..+++.|....+++++++.|..++++.+
T Consensus       428 ~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  428 QLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             eccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            887766899999999999999998887777777655554444444444567889999999999999999999988754

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=2.7e-25  Score=241.08  Aligned_cols=259  Identities=15%  Similarity=0.266  Sum_probs=222.3

Q ss_pred             cCCCCCceeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCcccccccccc-CC
Q 001163          341 STDDLPKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSD-YT  418 (1134)
Q Consensus       341 ~~d~~~~~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~  418 (1134)
                      -++........... +...|+++.|+++|.+ ||+|..+|.|.|||..+.+.+..                   +.+ |.
T Consensus       201 lW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~-LavG~~~g~v~iwD~~~~k~~~~-------------------~~~~h~  260 (484)
T KOG0305|consen  201 LWSASSGSVTELCSFGEELVTSVKWSPDGSH-LAVGTSDGTVQIWDVKEQKKTRT-------------------LRGSHA  260 (484)
T ss_pred             EEecCCCceEEeEecCCCceEEEEECCCCCE-EEEeecCCeEEEEehhhcccccc-------------------ccCCcC
Confidence            34444444444444 3899999999999995 69999999999999988877654                   455 99


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCc
Q 001163          419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT  498 (1134)
Q Consensus       419 ~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~  498 (1134)
                      ..|.+++|+  +..+.+|+.|+.|..+|++..+....  .+.+|...|..++|++|+.  ++++|+.|+.+.|||....+
T Consensus       261 ~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~~~~  334 (484)
T KOG0305|consen  261 SRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGLSPE  334 (484)
T ss_pred             ceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCCCcc
Confidence            999999998  78899999999999999998876543  3889999999999999999  79999999999999998889


Q ss_pred             eeEEecCCCcCEEEEeccccCCccEEEEe--cCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCC
Q 001163          499 KQYIFEGHESPVYSICPHHKENIQFIFST--ATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGE  576 (1134)
Q Consensus       499 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~--s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~  576 (1134)
                      ++..+..|.+.|.+++|+|-.. .+||+|  +.|++|++||..++...... ..+..|.++.|++..+.++++...  .+
T Consensus       335 p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~v-dtgsQVcsL~Wsk~~kEi~sthG~--s~  410 (484)
T KOG0305|consen  335 PKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSV-DTGSQVCSLIWSKKYKELLSTHGY--SE  410 (484)
T ss_pred             ccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEeccc-ccCCceeeEEEcCCCCEEEEecCC--CC
Confidence            9999999999999999998776 588886  47999999999866555444 346799999999999888776543  34


Q ss_pred             eEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 001163          577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV  630 (1134)
Q Consensus       577 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  630 (1134)
                      ..|.+|+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-..
T Consensus       411 n~i~lw~~ps~~~~~~l~gH~~-RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  411 NQITLWKYPSMKLVAELLGHTS-RVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             CcEEEEeccccceeeeecCCcc-eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            4699999999999999999998 7999999999999999999999999998765

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.94  E-value=2.9e-25  Score=230.12  Aligned_cols=299  Identities=18%  Similarity=0.243  Sum_probs=230.5

Q ss_pred             EEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC
Q 001163          350 VMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP  428 (1134)
Q Consensus       350 ~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  428 (1134)
                      ...|. |...|+++++.|.|-++ ++|+.|-+|++||+....... +.|+.             +.......|.+++||+
T Consensus       160 Ei~l~hgtk~Vsal~~Dp~GaR~-~sGs~Dy~v~~wDf~gMdas~-~~fr~-------------l~P~E~h~i~sl~ys~  224 (641)
T KOG0772|consen  160 EIQLKHGTKIVSALAVDPSGARF-VSGSLDYTVKFWDFQGMDASM-RSFRQ-------------LQPCETHQINSLQYSV  224 (641)
T ss_pred             eEeccCCceEEEEeeecCCCcee-eeccccceEEEEecccccccc-hhhhc-------------cCcccccccceeeecC
Confidence            33444 78899999999999975 899999999999997654322 12221             1223445899999999


Q ss_pred             CCCEEEEEeCCCEEEEEEccCCceee---------eeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCce
Q 001163          429 DGTLFGVAYSKHIVHLYTYHGGDELR---------NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK  499 (1134)
Q Consensus       429 d~~~las~s~dg~v~iwd~~~~~~~~---------~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~  499 (1134)
                      .|..|++.+.....+|+|-...+...         ....-.||...++|.+|+|+.+. .++|++.||+++|||+...+.
T Consensus       225 Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiWdv~~~k~  303 (641)
T KOG0772|consen  225 TGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIWDVNNTKS  303 (641)
T ss_pred             CCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEEecCCchh
Confidence            99999999999999999977544332         12234689999999999999988 699999999999999986543


Q ss_pred             -eEEe-----cCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceee---ecCCCC--CeeEEEECcCCCEEEE
Q 001163          500 -QYIF-----EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD---YDAPGH--SSTMMAYSADGARLFS  568 (1134)
Q Consensus       500 -~~~~-----~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~---~~~~~~--~v~~~~~s~~~~~l~~  568 (1134)
                       +..+     .+..-+++.++|+  ++|.+|++|+.||.|.+|+.........   -..|..  .|+++.||+||++|++
T Consensus       304 q~qVik~k~~~g~Rv~~tsC~~n--rdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlS  381 (641)
T KOG0772|consen  304 QLQVIKTKPAGGKRVPVTSCAWN--RDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLS  381 (641)
T ss_pred             heeEEeeccCCCcccCceeeecC--CCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhh
Confidence             3333     2345567888885  5568899999999999999765443322   234444  8999999999999999


Q ss_pred             EecCCCCCeEEEEEeCCCC-eeEEEecCCCC-CceEEEEEcCCCCEEEEEe------CCCeEEEEEcCCCceeEEEecCC
Q 001163          569 CGTNKEGESYLVEWNESEG-AVKRTYHGLGK-RSVGVVQFDTTKNRFLAAG------DEFMIKFWDMDNVNLLASIDADG  640 (1134)
Q Consensus       569 ~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~  640 (1134)
                      -+.|.    .+++||++.. +++....+... ..-+.++|+|+.+.|++|.      ..|.+++||..+...++.+... 
T Consensus       382 Rg~D~----tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~-  456 (641)
T KOG0772|consen  382 RGFDD----TLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS-  456 (641)
T ss_pred             ccCCC----ceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC-
Confidence            87654    5999999876 45555444322 2346789999999999985      3578999999999999998866 


Q ss_pred             CCCCcceEEEcCCCcEEEEEECCCcEEEEEcc
Q 001163          641 GLQASPCIRFNKEGILLAVSTNDNGIKILANA  672 (1134)
Q Consensus       641 ~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~  672 (1134)
                       ...|..+.|+|.-+.|.+|+.||++++|--.
T Consensus       457 -~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp  487 (641)
T KOG0772|consen  457 -TASVVRCLWHPKLNQIFAGSGDGTAHVYYDP  487 (641)
T ss_pred             -CceEEEEeecchhhheeeecCCCceEEEECc
Confidence             5678899999998899999999999987533

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=3.1e-26  Score=227.47  Aligned_cols=286  Identities=16%  Similarity=0.249  Sum_probs=227.6

Q ss_pred             eeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEe
Q 001163          458 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWL  537 (1134)
Q Consensus       458 ~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd  537 (1134)
                      .|.||.+.|.|++=+|..-. .++||+.||.|+|||+.+.+++.+|..|.+.|..|++..    ..+++++.|++|+.|-
T Consensus        61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk  135 (433)
T KOG0268|consen   61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK  135 (433)
T ss_pred             hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence            47899999999999998733 689999999999999999999999999999999999865    4689999999999998


Q ss_pred             cCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCE-EEEE
Q 001163          538 YDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNR-FLAA  616 (1134)
Q Consensus       538 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~  616 (1134)
                      ++.. ....+. ....+..+.-+..+..++++|.      .|.|||.....++..+.-..+ .+.++.|+|.... |+++
T Consensus       136 ~~~~-p~~til-g~s~~~gIdh~~~~~~FaTcGe------~i~IWD~~R~~Pv~smswG~D-ti~svkfNpvETsILas~  206 (433)
T KOG0268|consen  136 IDGP-PLHTIL-GKSVYLGIDHHRKNSVFATCGE------QIDIWDEQRDNPVSSMSWGAD-SISSVKFNPVETSILASC  206 (433)
T ss_pred             ccCC-cceeee-ccccccccccccccccccccCc------eeeecccccCCccceeecCCC-ceeEEecCCCcchheeee
Confidence            7753 222222 2335666666777788888875      399999998889988877665 7999999998754 5555


Q ss_pred             eCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhh
Q 001163          617 GDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAI  696 (1134)
Q Consensus       617 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  696 (1134)
                      +.|+.|.+||++.+.++..+...   ..-+.++|+|++-.++++++|..++.+|+......+...               
T Consensus       207 ~sDrsIvLyD~R~~~Pl~KVi~~---mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~---------------  268 (433)
T KOG0268|consen  207 ASDRSIVLYDLRQASPLKKVILT---MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVH---------------  268 (433)
T ss_pred             ccCCceEEEecccCCccceeeee---ccccceecCccccceeeccccccceehhhhhhcccchhh---------------
Confidence            69999999999999999887653   345789999988899999999999999986553222211               


Q ss_pred             hcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCcccc
Q 001163          697 VKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTA  776 (1134)
Q Consensus       697 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~  776 (1134)
                                                                                                  .+|.
T Consensus       269 ----------------------------------------------------------------------------~dhv  272 (433)
T KOG0268|consen  269 ----------------------------------------------------------------------------KDHV  272 (433)
T ss_pred             ----------------------------------------------------------------------------cccc
Confidence                                                                                        1377


Q ss_pred             ccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCC
Q 001163          777 MRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDS  856 (1134)
Q Consensus       777 ~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~  856 (1134)
                      +.|..+.|||.|+-+++|+-|.+|+||..+...                   +.....   .  .--..|.++.||.|.+
T Consensus       273 sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~-------------------SRdiYh---t--kRMq~V~~Vk~S~Dsk  328 (433)
T KOG0268|consen  273 SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH-------------------SRDIYH---T--KRMQHVFCVKYSMDSK  328 (433)
T ss_pred             eeEEEeccCCCcchhccccccceEEEeecCCCc-------------------chhhhh---H--hhhheeeEEEEecccc
Confidence            889999999999999999999999999766321                   000000   0  0134588999999999


Q ss_pred             eEEEee-CCeEEEEEccCCe
Q 001163          857 YVMSAS-GGKISLFNMMTFK  875 (1134)
Q Consensus       857 ~la~~s-dg~i~lwd~~~~~  875 (1134)
                      ++++|+ |+.|++|...-.+
T Consensus       329 yi~SGSdd~nvRlWka~Ase  348 (433)
T KOG0268|consen  329 YIISGSDDGNVRLWKAKASE  348 (433)
T ss_pred             EEEecCCCcceeeeecchhh
Confidence            999999 7899999875433

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=1.1e-24  Score=221.59  Aligned_cols=243  Identities=16%  Similarity=0.255  Sum_probs=201.1

Q ss_pred             cccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcC
Q 001163          774 LTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSK  853 (1134)
Q Consensus       774 ~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~  853 (1134)
                      ||...|+.+.|+|+...+++++.|..|+||......                   ....    ..  .|..+|+.+..+|
T Consensus       259 Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-------------------~~~~----~~--~h~~~V~~ls~h~  313 (506)
T KOG0289|consen  259 GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-------------------EPTS----SR--PHEEPVTGLSLHP  313 (506)
T ss_pred             CcceEEEEEEeccchhheeecCCcceEEeecccccc-------------------Cccc----cc--cccccceeeeecc
Confidence            377889999999999999999999999999765311                   1111    11  2899999999999


Q ss_pred             CCCeEEEee-CCeEEEEEccCCeEEEEecC--CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCce
Q 001163          854 NDSYVMSAS-GGKISLFNMMTFKTMTTFMP--PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRI  930 (1134)
Q Consensus       854 dg~~la~~s-dg~i~lwd~~~~~~~~~~~~--~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V  930 (1134)
                      .|.|+++++ |+++.+.|+.++..+.....  ..-.+++.+|+| ||.++++|..||.|+|||+.++..+..|.+|+++|
T Consensus       314 tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~v  392 (506)
T KOG0289|consen  314 TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPV  392 (506)
T ss_pred             CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCce
Confidence            999999999 89999999999998877653  234589999999 99999999999999999999999999999999999


Q ss_pred             EEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-eeceEEEEeCCCcc
Q 001163          931 TGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLE 1009 (1134)
Q Consensus       931 ~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~iwd~~~~~ 1009 (1134)
                      ..++|+.+|-+||++++|+.|++||+..-+.  ...++..+..     ++.++.|.+.|.+|+++ .+=+|++++-.+.+
T Consensus       393 k~i~FsENGY~Lat~add~~V~lwDLRKl~n--~kt~~l~~~~-----~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~  465 (506)
T KOG0289|consen  393 KAISFSENGYWLATAADDGSVKLWDLRKLKN--FKTIQLDEKK-----EVNSLSFDQSGTYLGIAGSDLQVYICKKKTKS  465 (506)
T ss_pred             eEEEeccCceEEEEEecCCeEEEEEehhhcc--cceeeccccc-----cceeEEEcCCCCeEEeecceeEEEEEeccccc
Confidence            9999999999999999999999999987552  2334443332     48999999999999994 66667776655444


Q ss_pred             cceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeec
Q 001163         1010 CLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTA 1049 (1134)
Q Consensus      1010 ~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~ 1049 (1134)
                      .........|++..+.+.|..+.+++++++.|..++++.+
T Consensus       466 W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  466 WTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            3333333478889999999999999999999999888764

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=8.6e-25  Score=212.42  Aligned_cols=249  Identities=16%  Similarity=0.158  Sum_probs=194.3

Q ss_pred             ccCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163          415 SDYTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD  493 (1134)
Q Consensus       415 ~~h~~~V~~l~~sp-d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd  493 (1134)
                      ...++.|.+|+||| ...+++.||.|++||+|+++....+.. +....|.++|.+++|+.||.  .+++|+.|+.+++||
T Consensus        24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~wD  100 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLWD  100 (347)
T ss_pred             CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEEE
Confidence            45678999999999 666777999999999999987432322 24677999999999999998  799999999999999


Q ss_pred             CCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCC
Q 001163          494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK  573 (1134)
Q Consensus       494 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~  573 (1134)
                      +.++ .+..+..|.++|..+.|.+..+-..|++||.|++|++||.+.......+..+. .++++..  -..+++++..+ 
T Consensus       101 L~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv--~~pm~vVata~-  175 (347)
T KOG0647|consen  101 LASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADV--LYPMAVVATAE-  175 (347)
T ss_pred             ccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhc--cCceeEEEecC-
Confidence            9999 56667789999999999877766789999999999999999877777766543 4444433  23345555433 


Q ss_pred             CCCeEEEEEeCCCCee-EEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC--ceeEEEecCCC-------CC
Q 001163          574 EGESYLVEWNESEGAV-KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV--NLLASIDADGG-------LQ  643 (1134)
Q Consensus       574 ~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~-------~~  643 (1134)
                         ..|.+|+++.+.. .+.....-+..+++++...+....+.|+-+|.+.|..++.+  +.-..+..|..       ..
T Consensus       176 ---r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VY  252 (347)
T KOG0647|consen  176 ---RHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVY  252 (347)
T ss_pred             ---CcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceE
Confidence               3499999976633 33333334446889999999988899999999999998876  33334444432       23


Q ss_pred             CcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163          644 ASPCIRFNKEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       644 ~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      .|++++|+|.-..|++++.||++.+||-...
T Consensus       253 aVNsi~FhP~hgtlvTaGsDGtf~FWDkdar  283 (347)
T KOG0647|consen  253 AVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR  283 (347)
T ss_pred             EecceEeecccceEEEecCCceEEEecchhh
Confidence            5789999999899999999999999996543

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.94  E-value=8.5e-25  Score=248.04  Aligned_cols=279  Identities=14%  Similarity=0.193  Sum_probs=238.2

Q ss_pred             ccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC
Q 001163          775 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN  854 (1134)
Q Consensus       775 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d  854 (1134)
                      +...+.+..|.  +..+++++.++++++|+                      ..++..+...+.|  |.+.|.++++..-
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~----------------------~~~~~~i~~~l~G--H~g~V~~l~~~~~  260 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWD----------------------LNNGYLILTRLVG--HFGGVWGLAFPSG  260 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEee----------------------cccceEEEeeccC--CCCCceeEEEecC
Confidence            45567777777  56699999999998885                      4555555555655  9999999999987


Q ss_pred             CCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEE
Q 001163          855 DSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGL  933 (1134)
Q Consensus       855 g~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l  933 (1134)
                      +.++++|+ |.++++||..+|++...+.+|...+.++...+   .++++|+.|.+|++|++.++..+..+.+|.++|.++
T Consensus       261 ~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v  337 (537)
T KOG0274|consen  261 GDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV  337 (537)
T ss_pred             CCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence            88999999 99999999999999999999999999999865   688899999999999999999999999999999999


Q ss_pred             EEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCc-ccc
Q 001163          934 AFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKL-ECL 1011 (1134)
Q Consensus       934 ~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~-~~~ 1011 (1134)
                      ..+  +.++++|+.|++|++||+.+++     ++....+|.   ..|.++.+... ..++. +.|++|++||+.++ +++
T Consensus       338 ~~~--~~~lvsgs~d~~v~VW~~~~~~-----cl~sl~gH~---~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~  406 (537)
T KOG0274|consen  338 QLD--EPLLVSGSYDGTVKVWDPRTGK-----CLKSLSGHT---GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCI  406 (537)
T ss_pred             Eec--CCEEEEEecCceEEEEEhhhce-----eeeeecCCc---ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhh
Confidence            997  8899999999999999999755     788888887   57999987776 66666 68999999999999 888


Q ss_pred             eeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEe
Q 001163         1012 KQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGL 1091 (1134)
Q Consensus      1012 ~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~ 1091 (1134)
                      ..+.  +|.+-+.++.+  .+++|++++.|++|++||..+++.+..+...      |...|+.++..     ...+++++
T Consensus       407 ~tl~--~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~------~~~~v~~l~~~-----~~~il~s~  471 (537)
T KOG0274|consen  407 HTLQ--GHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR------HVGGVSALALG-----KEEILCSS  471 (537)
T ss_pred             hhhc--CCccccccccc--ccceeEeccccccEEEeecccCceeeeeccC------CcccEEEeecC-----cceEEEEe
Confidence            8887  78888866665  6889999999999999999999998877732      45667766331     36899999


Q ss_pred             cCCcEEEEeCCCCCCCc
Q 001163         1092 TDGGVYIIEPLEAEGRW 1108 (1134)
Q Consensus      1092 ~Dg~v~vW~~~~~~~~~ 1108 (1134)
                      .||++.+||+.+.....
T Consensus       472 ~~~~~~l~dl~~~~~~~  488 (537)
T KOG0274|consen  472 DDGSVKLWDLRSGTLIR  488 (537)
T ss_pred             cCCeeEEEecccCchhh
Confidence            99999999998877654

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=3.6e-25  Score=209.58  Aligned_cols=251  Identities=13%  Similarity=0.219  Sum_probs=206.2

Q ss_pred             eEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC
Q 001163          349 VVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP  428 (1134)
Q Consensus       349 ~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  428 (1134)
                      ..+.+.-.+.+..|+||+.....+++++.||+++|||......                  +...++.|...|.++.|++
T Consensus        53 e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------Pi~~~kEH~~EV~Svdwn~  114 (311)
T KOG0277|consen   53 ECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------PIHKFKEHKREVYSVDWNT  114 (311)
T ss_pred             EEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc------------------chhHHHhhhhheEEecccc
Confidence            3444556789999999999888889999999999999543321                  1123788999999999999


Q ss_pred             -CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCC
Q 001163          429 -DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE  507 (1134)
Q Consensus       429 -d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~  507 (1134)
                       +++.++++|.|++|++|+...+..+.   ++.||...|...+|+|.... +++++|.|+++++||++.......+..|.
T Consensus       115 ~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~i~ah~  190 (311)
T KOG0277|consen  115 VRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMSIEAHN  190 (311)
T ss_pred             ccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeEEEecc
Confidence             67788888999999999998887666   79999999999999998776 79999999999999998755555589999


Q ss_pred             cCEEEEeccccCCccEEEEecCCCcEEEEecCCCC-ceeeecCCCCCeeEEEECcCCC-EEEEEecCCCCCeEEEEEeCC
Q 001163          508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG-SRVDYDAPGHSSTMMAYSADGA-RLFSCGTNKEGESYLVEWNES  585 (1134)
Q Consensus       508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~  585 (1134)
                      ..|.++.|+.... ..+++|+.|+.|+.||++..+ +..++.+|+-.|+.+.|||... .|++++.    +.++++||..
T Consensus       191 ~Eil~cdw~ky~~-~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasY----DmT~riw~~~  265 (311)
T KOG0277|consen  191 SEILCCDWSKYNH-NVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASY----DMTVRIWDPE  265 (311)
T ss_pred             ceeEeecccccCC-cEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccc----cceEEecccc
Confidence            9999999976543 799999999999999998765 4556777888999999999764 6677765    4569999998


Q ss_pred             CCe-eEEEecCCCCCceEEEEEcCC-CCEEEEEeCCCeEEEEEc
Q 001163          586 EGA-VKRTYHGLGKRSVGVVQFDTT-KNRFLAAGDEFMIKFWDM  627 (1134)
Q Consensus       586 ~~~-~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~  627 (1134)
                      .+. .+.++..|.. .+..+.|++- ..++++++-|+.++||+.
T Consensus       266 ~~ds~~e~~~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  266 RQDSAIETVDHHTE-FVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             cchhhhhhhhccce-EEeccccccccCceeeecccccceeeecc
Confidence            654 4455555554 7888888874 578999999999999984

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=6.7e-24  Score=196.64  Aligned_cols=304  Identities=14%  Similarity=0.151  Sum_probs=226.0

Q ss_pred             ccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC
Q 001163          775 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN  854 (1134)
Q Consensus       775 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d  854 (1134)
                      ....|.+++|.|.|...++++...+.+|...+.-.-...+...+.      .+..  ++.  -....|.+.|.|.+|||+
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~------~pp~--v~~--kr~khhkgsiyc~~ws~~  100 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAK------QPPS--VLC--KRNKHHKGSIYCTAWSPC  100 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCccccccccc------CCCe--EEe--eeccccCccEEEEEecCc
Confidence            567899999999999999999999999976542110000000000      0000  000  111248999999999999


Q ss_pred             CCeEEEee-CCeEEEEEcc--CCeE---EEEecCCCCCeEEEEEcCC---CCcEEEEEe-CCCcEEEEEcccceEEEecc
Q 001163          855 DSYVMSAS-GGKISLFNMM--TFKT---MTTFMPPPPAATFLAFHPQ---DNNIIAIGM-EDSSIQIYNVRVDEVKTKLK  924 (1134)
Q Consensus       855 g~~la~~s-dg~i~lwd~~--~~~~---~~~~~~~~~~v~~l~~sp~---~~~~la~g~-~dg~i~iwd~~~~~~~~~l~  924 (1134)
                      |.++++|+ |.+|++..+.  +...   -.++.-|.+.|..++|-.+   ++.+|++++ .|-.|++-|..+|+..+.+.
T Consensus       101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s  180 (350)
T KOG0641|consen  101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS  180 (350)
T ss_pred             cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence            99999999 8888887653  3322   2346679999999999642   466888765 46688888999999999999


Q ss_pred             CccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCC----CCCCCceEEEEcCCCCEEEEE-eece
Q 001163          925 GHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRT----ASALADTRVQFHLDQTHLLAV-HETQ  999 (1134)
Q Consensus       925 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~l~fs~dg~~l~~~-~d~~  999 (1134)
                      +|.+.|.++ ++=+|-++++|+.|.+|++||+.-..     ++.......    ...+.|.+++..|.|++|+++ .|..
T Consensus       181 ghtghilal-yswn~~m~~sgsqdktirfwdlrv~~-----~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss  254 (350)
T KOG0641|consen  181 GHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNS-----CVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS  254 (350)
T ss_pred             CCcccEEEE-EEecCcEEEccCCCceEEEEeeeccc-----eeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc
Confidence            999999886 34468899999999999999987643     222221111    112679999999999999997 7899


Q ss_pred             EEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEe
Q 001163         1000 IAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAG 1079 (1134)
Q Consensus      1000 i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 1079 (1134)
                      ..+||+..++.+..+.  .|+..|.++.|||...||++++.|..|++-|++.. +...+.  ..+...|.+.+.  .+.|
T Consensus       255 c~lydirg~r~iq~f~--phsadir~vrfsp~a~yllt~syd~~ikltdlqgd-la~el~--~~vv~ehkdk~i--~~rw  327 (350)
T KOG0641|consen  255 CMLYDIRGGRMIQRFH--PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LAHELP--IMVVAEHKDKAI--QCRW  327 (350)
T ss_pred             eEEEEeeCCceeeeeC--CCccceeEEEeCCCceEEEEecccceEEEeecccc-hhhcCc--eEEEEeccCceE--EEEe
Confidence            9999999999999998  78999999999999999999999999999998753 222221  122223666544  4589


Q ss_pred             cCCCCCEEEEEecCCcEEEEeCC
Q 001163         1080 NPTDPNQFALGLTDGGVYIIEPL 1102 (1134)
Q Consensus      1080 ~p~~~~~l~s~~~Dg~v~vW~~~ 1102 (1134)
                      +|++ --+++.+.|.++-+|.+.
T Consensus       328 h~~d-~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  328 HPQD-FSFISSSADKTATLWALN  349 (350)
T ss_pred             cCcc-ceeeeccCcceEEEeccC
Confidence            9964 568889999999999764

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.8e-24  Score=211.46  Aligned_cols=243  Identities=19%  Similarity=0.248  Sum_probs=205.7

Q ss_pred             cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163          414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD  493 (1134)
Q Consensus       414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd  493 (1134)
                      +..|.++|+++|.  ++.|+|+||.|-+|+|||+.+..++.   .+..|.+.|+++.|.++-..-.|++|+.||.|.+|+
T Consensus        39 ~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~  113 (362)
T KOG0294|consen   39 FSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR  113 (362)
T ss_pred             ccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence            6789999999999  58999999999999999999887665   677899999999999886433599999999999999


Q ss_pred             CCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCC
Q 001163          494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK  573 (1134)
Q Consensus       494 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~  573 (1134)
                      ...-.++.++++|.+.|+.++++|++  .+-++.+.|+.+++||+-.++.-........ -..+.|+|.|.+++..+.++
T Consensus       114 ~~~W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-at~v~w~~~Gd~F~v~~~~~  190 (362)
T KOG0294|consen  114 VGSWELLKSLKAHKGQVTDLSIHPSG--KLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-ATLVSWSPQGDHFVVSGRNK  190 (362)
T ss_pred             cCCeEEeeeecccccccceeEecCCC--ceEEEEcCCceeeeehhhcCccceeeccCCc-ceeeEEcCCCCEEEEEeccE
Confidence            99999999999999999999998876  7889999999999999988877666655333 34489999999988887543


Q ss_pred             CCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEE--c
Q 001163          574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRF--N  651 (1134)
Q Consensus       574 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~--s  651 (1134)
                           |-+|.+.+......+....  .+.++.|. ++..+++|++|+.|.+||.++..+...+..|  ...|..+.+  .
T Consensus       191 -----i~i~q~d~A~v~~~i~~~~--r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH--~~RVK~i~~~~~  260 (362)
T KOG0294|consen  191 -----IDIYQLDNASVFREIENPK--RILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAH--ENRVKDIASYTN  260 (362)
T ss_pred             -----EEEEecccHhHhhhhhccc--cceeeeec-CCceEEEecCCceEEEeccCCCccceeeecc--hhheeeeEEEec
Confidence                 9999988877666555432  45556564 5679999999999999999998888888866  668888874  4


Q ss_pred             CCCcEEEEEECCCcEEEEEccCC
Q 001163          652 KEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       652 p~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      |++.+|++++.||.|++||+...
T Consensus       261 ~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  261 PEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             CCceEEEEeccCceEEEEEcccc
Confidence            67899999999999999998765

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.1e-24  Score=210.60  Aligned_cols=309  Identities=16%  Similarity=0.187  Sum_probs=206.8

Q ss_pred             ccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceee-eeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeE
Q 001163          411 ASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELR-NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVI  489 (1134)
Q Consensus       411 ~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~-~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i  489 (1134)
                      ...+++|.+.|++++||.||++||+++.|++|+||+++.-..-. .....+-.-+.-+.++|+||-+. +++++-...++
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s-~vv~~~~g~~l  157 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKS-VVVSVKRGNKL  157 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcce-EEEEEccCCEE
Confidence            34589999999999999999999999999999999997632110 00011112234678999999886 56777777899


Q ss_pred             EEEECCC---CceeEE--------e-cCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEE
Q 001163          490 KVWDAVT---GTKQYI--------F-EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMM  557 (1134)
Q Consensus       490 ~iwd~~~---~~~~~~--------~-~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~  557 (1134)
                      ++|.+..   |.....        | +.|+..|..+-+  .+++.+|++++.|..|.+|++. ++....+......-+..
T Consensus       158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi--A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~a  234 (420)
T KOG2096|consen  158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI--AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDA  234 (420)
T ss_pred             EEEEeeecccCCCCcccccccccccchhcccceEEEee--cCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccce
Confidence            9997643   222111        1 236666666655  4566899999999999999998 55555555555566777


Q ss_pred             EECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Q 001163          558 AYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID  637 (1134)
Q Consensus       558 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  637 (1134)
                      +.||+|+++++++...|    +.+|.                    ++|..+|.+               ..-..+..+.
T Consensus       235 avSP~GRFia~~gFTpD----VkVwE--------------------~~f~kdG~f---------------qev~rvf~Lk  275 (420)
T KOG2096|consen  235 AVSPDGRFIAVSGFTPD----VKVWE--------------------PIFTKDGTF---------------QEVKRVFSLK  275 (420)
T ss_pred             eeCCCCcEEEEecCCCC----ceEEE--------------------EEeccCcch---------------hhhhhhheec
Confidence            88888888888876443    66664                    334444321               1112223333


Q ss_pred             cCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcC
Q 001163          638 ADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLG  717 (1134)
Q Consensus       638 ~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  717 (1134)
                        +|...|...+|+++...+++.+.||+++|||++-....     + ..                               
T Consensus       276 --GH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~-----~-qD-------------------------------  316 (420)
T KOG2096|consen  276 --GHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA-----G-QD-------------------------------  316 (420)
T ss_pred             --cchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec-----C-CC-------------------------------
Confidence              66889999999999999999999999999997533100     0 00                               


Q ss_pred             CCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccC
Q 001163          718 ERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASN  797 (1134)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~d  797 (1134)
                                                                  +...+....+.+........+..+|+|+.|+.... 
T Consensus       317 --------------------------------------------pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-  351 (420)
T KOG2096|consen  317 --------------------------------------------PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-  351 (420)
T ss_pred             --------------------------------------------chHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-
Confidence                                                        00000000111112223347899999997766554 


Q ss_pred             CeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEE
Q 001163          798 AVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFN  870 (1134)
Q Consensus       798 g~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd  870 (1134)
                      ..+++|.-.                      +|+.....-.  .|...|.+++|+++|+++++++|..++++.
T Consensus       352 s~l~~~~se----------------------~g~~~~~~e~--~h~~~Is~is~~~~g~~~atcGdr~vrv~~  400 (420)
T KOG2096|consen  352 SDLKVFASE----------------------DGKDYPELED--IHSTTISSISYSSDGKYIATCGDRYVRVIR  400 (420)
T ss_pred             CceEEEEcc----------------------cCccchhHHH--hhcCceeeEEecCCCcEEeeecceeeeeec
Confidence            456666433                      3332221111  389999999999999999999999998886

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=5.1e-25  Score=214.21  Aligned_cols=333  Identities=14%  Similarity=0.204  Sum_probs=248.3

Q ss_pred             eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEE
Q 001163          588 AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIK  667 (1134)
Q Consensus       588 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~  667 (1134)
                      +.++.+.+|.+ .|..++.....+.+.+++.|.+.+||.+++|+++..+.+|  .+.|+++.|++.+.++++++.|++..
T Consensus       139 ~lvre~~GHkD-GiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH--~GSVNsikfh~s~~L~lTaSGD~taH  215 (481)
T KOG0300|consen  139 RLVRELEGHKD-GIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGH--TGSVNSIKFHNSGLLLLTASGDETAH  215 (481)
T ss_pred             eehhhhccccc-ceeeehhhcCCcceeecccccceeEEeeccccceeeeccc--ccceeeEEeccccceEEEccCCcchH
Confidence            45667888887 8888888777788888999999999999999999999866  77999999999999999999999999


Q ss_pred             EEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccccccc
Q 001163          668 ILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEA  747 (1134)
Q Consensus       668 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  747 (1134)
                      ||...-..+......                               |            ...+++               
T Consensus       216 IW~~av~~~vP~~~a-------------------------------~------------~~hSsE---------------  237 (481)
T KOG0300|consen  216 IWKAAVNWEVPSNNA-------------------------------P------------SDHSSE---------------  237 (481)
T ss_pred             HHHHhhcCcCCCCCC-------------------------------C------------CCCCch---------------
Confidence            997543210000000                               0            000000               


Q ss_pred             ccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCC
Q 001163          748 VEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQP  827 (1134)
Q Consensus       748 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~  827 (1134)
                       ..+.--|-                  | ..-..-....||         .+|++                         
T Consensus       238 -eE~e~sDe------------------~-~~d~d~~~~sD~---------~tiRv-------------------------  263 (481)
T KOG0300|consen  238 -EEEEHSDE------------------H-NRDTDSSEKSDG---------HTIRV-------------------------  263 (481)
T ss_pred             -hhhhcccc------------------c-ccccccccccCC---------ceeee-------------------------
Confidence             00000000                  0 000000000011         12222                         


Q ss_pred             CCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCC
Q 001163          828 PSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED  906 (1134)
Q Consensus       828 ~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~d  906 (1134)
                           ....+.+  |...|.+..|...|+.+++++ |.+..+||+++++.+..+.+|..+.+-++-+| ..+++++.+.|
T Consensus       264 -----Pl~~ltg--H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrD  335 (481)
T KOG0300|consen  264 -----PLMRLTG--HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRD  335 (481)
T ss_pred             -----eeeeeec--cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccC
Confidence                 0111333  999999999999999999999 99999999999999999999999999999999 88999999999


Q ss_pred             CcEEEEEcccc-eEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEE
Q 001163          907 SSIQIYNVRVD-EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQF  985 (1134)
Q Consensus       907 g~i~iwd~~~~-~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~f  985 (1134)
                      -+.++||.... ..+..|+||.+.|+++.|.-|. .+++|++|.+|++||+.+-+..   +..+..     ++++..++.
T Consensus       336 tTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsp---lATIRt-----dS~~NRvav  406 (481)
T KOG0300|consen  336 TTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSP---LATIRT-----DSPANRVAV  406 (481)
T ss_pred             ceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCc---ceeeec-----CCccceeEe
Confidence            99999999854 4578899999999999998654 7899999999999999874421   111111     146899999


Q ss_pred             cCCCCEEEEE-eeceEEEEeCCCcccceee--ccCCCccCEEEEEEccCCCE--EEEEecCCcEEEeecCCC
Q 001163          986 HLDQTHLLAV-HETQIAIYEAPKLECLKQF--VPREASGPITHATYSCDSQS--IYVAFEEGSVGVLTASTL 1052 (1134)
Q Consensus       986 s~dg~~l~~~-~d~~i~iwd~~~~~~~~~~--~~~~h~~~v~~~~~s~dg~~--l~s~s~Dg~i~vwd~~~~ 1052 (1134)
                      +..+..++.- .++.|++||++.....+..  ..++|..-|+|++|+.+.-.  |++++-|..+.-|++...
T Consensus       407 s~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  407 SKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             ecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            9999999994 6789999999855443333  24689999999999876543  899999999999998653

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=8.6e-25  Score=233.33  Aligned_cols=293  Identities=20%  Similarity=0.246  Sum_probs=235.2

Q ss_pred             cCCCee---EEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCC
Q 001163          355 QGSAVK---SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT  431 (1134)
Q Consensus       355 h~~~V~---~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~  431 (1134)
                      |...|.   ++..++.+.++|.+|+.||.|++|++.......            +.++. ..+..|.+.|+.++..-+|+
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~------------s~~~~-asme~HsDWVNDiiL~~~~~   86 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEP------------STPYI-ASMEHHSDWVNDIILCGNGK   86 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCc------------ccchh-hhhhhhHhHHhhHHhhcCCC
Confidence            334455   566666555567899999999999987544321            11111 23678999999999999999


Q ss_pred             EEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEE-ecCCCceEEEEEeCCCeEEEEECCCC--ceeEE------
Q 001163          432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAF-SYPNKQLSVVTCGEDRVIKVWDAVTG--TKQYI------  502 (1134)
Q Consensus       432 ~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~-s~~~~~~~l~s~s~d~~i~iwd~~~~--~~~~~------  502 (1134)
                      .|+++|.|-+|++|+...+. ..+..++..|.+.|.|++. .++..  ++||||-|+.|.+||+.+|  +.+.+      
T Consensus        87 tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~  163 (735)
T KOG0308|consen   87 TLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTV  163 (735)
T ss_pred             ceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence            99999999999999998874 2233468889999999999 66666  8999999999999999988  33332      


Q ss_pred             --ec-CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEE
Q 001163          503 --FE-GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYL  579 (1134)
Q Consensus       503 --~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i  579 (1134)
                        +. |+..+|++++.+  +.|..+++|+..+.+++||.++......+.+|...|..+..++||+.+++++.|    ++|
T Consensus       164 ~sl~sG~k~siYSLA~N--~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSD----gtI  237 (735)
T KOG0308|consen  164 NSLGSGPKDSIYSLAMN--QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSD----GTI  237 (735)
T ss_pred             ccCCCCCccceeeeecC--CcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCC----ceE
Confidence              23 788999999875  445899999999999999999999999999999999999999999999999864    469


Q ss_pred             EEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEE
Q 001163          580 VEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAV  659 (1134)
Q Consensus       580 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~  659 (1134)
                      ++||+...+++.++..|.+ .+.++..+|+=..+++|+.||.|+.=|+++......+-..  ..+|..+..+...+-+-+
T Consensus       238 rlWdLgqQrCl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~--daPv~~l~~~~~~~~~Wv  314 (735)
T KOG0308|consen  238 RLWDLGQQRCLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE--DAPVLKLHLHEHDNSVWV  314 (735)
T ss_pred             EeeeccccceeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC--CCchhhhhhccccCCcee
Confidence            9999999999999999998 6999999999999999999999999999885433333222  335667777654444566


Q ss_pred             EECCCcEEEEEcc
Q 001163          660 STNDNGIKILANA  672 (1134)
Q Consensus       660 ~~~dg~i~iw~~~  672 (1134)
                      ++.|+.|+-|...
T Consensus       315 tTtds~I~rW~~~  327 (735)
T KOG0308|consen  315 TTTDSSIKRWKLE  327 (735)
T ss_pred             eeccccceecCCc
Confidence            7788888888654

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.93  E-value=3e-24  Score=231.16  Aligned_cols=282  Identities=15%  Similarity=0.292  Sum_probs=236.7

Q ss_pred             eeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEE-EE
Q 001163          348 TVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNR-VM  425 (1134)
Q Consensus       348 ~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~  425 (1134)
                      ++.+.++ |+..|..+++.+...  ++++|.||++++|+-..++.+..                 ..+.+|.+-|.+ ++
T Consensus         5 ~ls~~l~gH~~DVr~v~~~~~~~--i~s~sRd~t~~vw~~~~~~~l~~-----------------~~~~~~~g~i~~~i~   65 (745)
T KOG0301|consen    5 KLSHELEGHKSDVRAVAVTDGVC--IISGSRDGTVKVWAKKGKQYLET-----------------HAFEGPKGFIANSIC   65 (745)
T ss_pred             eeEEEeccCccchheeEecCCeE--EeecCCCCceeeeeccCcccccc-----------------eecccCcceeeccce
Confidence            3455665 999999999988874  67999999999999877665442                 235678888888 88


Q ss_pred             EcC-CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEec
Q 001163          426 WSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE  504 (1134)
Q Consensus       426 ~sp-d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  504 (1134)
                      +-+ ++-.|++|+.|++|.+|.......+.   .|.+|+..|.++....++.   ++|||.|.++++|-  .+++...+.
T Consensus        66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l~  137 (745)
T KOG0301|consen   66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSLQ  137 (745)
T ss_pred             eccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhcccC
Confidence            886 66679999999999999999887655   7999999999999877775   89999999999996  677888899


Q ss_pred             CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeC
Q 001163          505 GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE  584 (1134)
Q Consensus       505 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~  584 (1134)
                      +|...|+++...+.   +.++|||.|++|++|.-  ++....+.+|...|+.+++-+++. +++++.    ++.|++|++
T Consensus       138 gH~asVWAv~~l~e---~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsN----Dg~Ir~w~~  207 (745)
T KOG0301|consen  138 GHTASVWAVASLPE---NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSN----DGSIRLWDL  207 (745)
T ss_pred             CcchheeeeeecCC---CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecC----CceEEEEec
Confidence            99999999987554   38999999999999954  667778889999999999988764 566665    446999999


Q ss_pred             CCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCC
Q 001163          585 SEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN  664 (1134)
Q Consensus       585 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg  664 (1134)
                       +|+.+.++.+|.. .+.++....++..++++++|++++||+..  ++.+.+..+  ...|.++.+-++|. +++|+.||
T Consensus       208 -~ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP--ttsiWsa~~L~NgD-Ivvg~SDG  280 (745)
T KOG0301|consen  208 -DGEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP--TTSIWSAKVLLNGD-IVVGGSDG  280 (745)
T ss_pred             -cCceeeeeeccce-EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC--ccceEEEEEeeCCC-EEEeccCc
Confidence             8999999999998 89999988888999999999999999976  777777765  34688888888876 56788999


Q ss_pred             cEEEEEccC
Q 001163          665 GIKILANAD  673 (1134)
Q Consensus       665 ~i~iw~~~~  673 (1134)
                      .||||....
T Consensus       281 ~VrVfT~~k  289 (745)
T KOG0301|consen  281 RVRVFTVDK  289 (745)
T ss_pred             eEEEEEecc
Confidence            999998754

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=1.9e-25  Score=221.92  Aligned_cols=284  Identities=14%  Similarity=0.208  Sum_probs=229.1

Q ss_pred             eecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCE
Q 001163          353 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL  432 (1134)
Q Consensus       353 ~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~  432 (1134)
                      -+|.++|.|++=+|..-..+|+|+.||.|+|||+.+.+++..                   +..|.+.|..|++..  ..
T Consensus        63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~v~~--~~  121 (433)
T KOG0268|consen   63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGICVTQ--TS  121 (433)
T ss_pred             cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEEecc--cc
Confidence            359999999999998855789999999999999998877664                   678999999999987  78


Q ss_pred             EEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEE
Q 001163          433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS  512 (1134)
Q Consensus       433 las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~  512 (1134)
                      +++++.|.+|+.|.+... ..+   ++. -...+..+.-+..+.  .++|||.  .|-|||.....++..+.--...|.+
T Consensus       122 ~~tvgdDKtvK~wk~~~~-p~~---til-g~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~s  192 (433)
T KOG0268|consen  122 FFTVGDDKTVKQWKIDGP-PLH---TIL-GKSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWGADSISS  192 (433)
T ss_pred             eEEecCCcceeeeeccCC-cce---eee-ccccccccccccccc--cccccCc--eeeecccccCCccceeecCCCceeE
Confidence            899999999999998763 222   333 234466666666666  6889886  5899999999999999888888999


Q ss_pred             EeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC-eeEE
Q 001163          513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG-AVKR  591 (1134)
Q Consensus       513 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~  591 (1134)
                      +.|+|... .+|++++.|+.|.+||++...+...+.. ...-+.++|+|.+-.++++.    .+..++.+|++.- +++.
T Consensus       193 vkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~----ED~nlY~~DmR~l~~p~~  266 (433)
T KOG0268|consen  193 VKFNPVET-SILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAAN----EDHNLYTYDMRNLSRPLN  266 (433)
T ss_pred             EecCCCcc-hheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeecc----ccccceehhhhhhcccch
Confidence            99988665 6888999999999999998777665443 23456789999665666654    3556999999865 5666


Q ss_pred             EecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEc
Q 001163          592 TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN  671 (1134)
Q Consensus       592 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~  671 (1134)
                      .+.+|.. .|.++.|+|.|.-+++||.|.+|+||..+.+..-..+-. .....|.|+.|+.|.+++++|++|+.|++|..
T Consensus       267 v~~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  267 VHKDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA  344 (433)
T ss_pred             hhcccce-eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence            6777766 899999999999999999999999999987754433321 22456899999999999999999999999987


Q ss_pred             cCC
Q 001163          672 ADG  674 (1134)
Q Consensus       672 ~~~  674 (1134)
                      ...
T Consensus       345 ~As  347 (433)
T KOG0268|consen  345 KAS  347 (433)
T ss_pred             chh
Confidence            544

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.93  E-value=2.6e-24  Score=231.60  Aligned_cols=274  Identities=14%  Similarity=0.198  Sum_probs=223.6

Q ss_pred             ccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccc-cCCCCCCCCCCeeE-EE
Q 001163          773 NLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMT-NDISDTNPEDAVPC-FA  850 (1134)
Q Consensus       773 ~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~h~~~v~~-v~  850 (1134)
                      .+|...|..+++.++. .+++++.||++++|+-..                      +..+. ..+.  +|.+.|.. ++
T Consensus        11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~----------------------~~~l~~~~~~--~~~g~i~~~i~   65 (745)
T KOG0301|consen   11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKG----------------------KQYLETHAFE--GPKGFIANSIC   65 (745)
T ss_pred             ccCccchheeEecCCe-EEeecCCCCceeeeeccC----------------------cccccceecc--cCcceeeccce
Confidence            4688999888876655 699999999999996332                      11111 1122  25666655 77


Q ss_pred             EcC-CCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccC
Q 001163          851 LSK-NDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQK  928 (1134)
Q Consensus       851 ~s~-dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~  928 (1134)
                      +.+ ++-.+++|+ |.+|.+|...+..++.++++|...|.|+.... ++. +++|++|.+++||..  +++...+++|..
T Consensus        66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~a  141 (745)
T KOG0301|consen   66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTA  141 (745)
T ss_pred             eccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcch
Confidence            774 444577777 99999999999999999999999999999876 565 999999999999976  566777999999


Q ss_pred             ceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCc
Q 001163          929 RITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKL 1008 (1134)
Q Consensus       929 ~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~ 1008 (1134)
                      .|+++++-|++ .++|||.|.+|++|.-.+       .++.+.+|.   +-|+.+++-+++.+|-++.||.|+.|++ +|
T Consensus       142 sVWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHt---D~VRgL~vl~~~~flScsNDg~Ir~w~~-~g  209 (745)
T KOG0301|consen  142 SVWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHT---DCVRGLAVLDDSHFLSCSNDGSIRLWDL-DG  209 (745)
T ss_pred             heeeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccch---hheeeeEEecCCCeEeecCCceEEEEec-cC
Confidence            99999999988 889999999999998644       677888887   5899999999999999999999999999 78


Q ss_pred             ccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEE
Q 001163         1009 ECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFA 1088 (1134)
Q Consensus      1009 ~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~ 1088 (1134)
                      +++..+.  +|..-|.++....+++.++++++|++++||+..  +....+..+       +-.|+++.+-  +  +.-++
T Consensus       210 e~l~~~~--ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP-------ttsiWsa~~L--~--NgDIv  274 (745)
T KOG0301|consen  210 EVLLEMH--GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP-------TTSIWSAKVL--L--NGDIV  274 (745)
T ss_pred             ceeeeee--ccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC-------ccceEEEEEe--e--CCCEE
Confidence            9888887  999999999999999999999999999999987  333333322       2456766443  3  34688


Q ss_pred             EEecCCcEEEEeCC
Q 001163         1089 LGLTDGGVYIIEPL 1102 (1134)
Q Consensus      1089 s~~~Dg~v~vW~~~ 1102 (1134)
                      +|+.||.||||...
T Consensus       275 vg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  275 VGGSDGRVRVFTVD  288 (745)
T ss_pred             EeccCceEEEEEec
Confidence            99999999999876

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.2e-24  Score=204.84  Aligned_cols=254  Identities=18%  Similarity=0.267  Sum_probs=209.3

Q ss_pred             ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEec--CCCceEEEEEeCCCeEE
Q 001163          413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY--PNKQLSVVTCGEDRVIK  490 (1134)
Q Consensus       413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~--~~~~~~l~s~s~d~~i~  490 (1134)
                      +...|++.|..+...--|++||+++.|++|+|+.++.+.......+|.||.++|+.++|..  -|.  +|++++.||.|.
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI   83 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI   83 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence            3578999999999999999999999999999999998776666778999999999999987  577  899999999999


Q ss_pred             EEECCCCc--eeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCC---ceeeecCCCCCeeEEEECcC---
Q 001163          491 VWDAVTGT--KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG---SRVDYDAPGHSSTMMAYSAD---  562 (1134)
Q Consensus       491 iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~s~~---  562 (1134)
                      ||.-.+|+  ..+....|...|++++|.|..-|-.|++++.||.|.+.+++..+   .......|.-.|++++|.|.   
T Consensus        84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~  163 (299)
T KOG1332|consen   84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP  163 (299)
T ss_pred             EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence            99987774  34567789999999999999999999999999999999988762   23345567778999999886   


Q ss_pred             C-----------CEEEEEecCCCCCeEEEEEeCCCC--eeEEEecCCCCCceEEEEEcCCC----CEEEEEeCCCeEEEE
Q 001163          563 G-----------ARLFSCGTNKEGESYLVEWNESEG--AVKRTYHGLGKRSVGVVQFDTTK----NRFLAAGDEFMIKFW  625 (1134)
Q Consensus       563 ~-----------~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~iw  625 (1134)
                      |           +.|++++.|    ..|.+|+...+  +..+++.+|.+ .|+.++|.|.-    .++++++.||++.||
T Consensus       164 g~~~~~~~~~~~krlvSgGcD----n~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~iAS~SqDg~viIw  238 (299)
T KOG1332|consen  164 GSLVDQGPAAKVKRLVSGGCD----NLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGLPKSTIASCSQDGTVIIW  238 (299)
T ss_pred             ccccccCcccccceeeccCCc----cceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCCCceeeEEecCCCcEEEE
Confidence            5           568888764    45999998876  34456888887 89999999975    579999999999999


Q ss_pred             EcCCC-ceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccC
Q 001163          626 DMDNV-NLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD  673 (1134)
Q Consensus       626 d~~~~-~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~  673 (1134)
                      ..+.. +.-...-.+.....+..+.|+..|+.|++++.|+.+.+|.-+.
T Consensus       239 t~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  239 TKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             EecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence            87632 1111111223356789999999999999999999999997543

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=3.1e-22  Score=222.85  Aligned_cols=518  Identities=15%  Similarity=0.159  Sum_probs=332.0

Q ss_pred             eecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCc-cEEEEecCCCcEEEEe
Q 001163          459 IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENI-QFIFSTATDGKIKAWL  537 (1134)
Q Consensus       459 l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~s~dg~i~vwd  537 (1134)
                      +.|-...-..-.|++|++.  ++. ..+..|.|+...+|.++..+.+|..++..+.+.+.... .++++++.||.|++||
T Consensus        12 lgg~n~~~~~avfSnD~k~--l~~-~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd   88 (792)
T KOG1963|consen   12 LGGRNGNKSPAVFSNDAKF--LFL-CTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWD   88 (792)
T ss_pred             eccccceecccccccCCcE--EEE-eeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEec
Confidence            3333333445578999983  333 33569999999999999999999999999998877654 6788999999999999


Q ss_pred             cCCCCceeeecCCCCCeeEEEECc---CCCEEEEEecCCCCCeEEEEEeCCCCee-----EEEecCCCC------CceEE
Q 001163          538 YDNLGSRVDYDAPGHSSTMMAYSA---DGARLFSCGTNKEGESYLVEWNESEGAV-----KRTYHGLGK------RSVGV  603 (1134)
Q Consensus       538 ~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~~~~~~~~i~~wd~~~~~~-----~~~~~~~~~------~~v~~  603 (1134)
                      .........+.... ++..+.+.|   +-...+..+.+.  ...+..........     +.++..+..      ..-.+
T Consensus        89 ~~~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~--~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~  165 (792)
T KOG1963|consen   89 WSDGELLKTFDNNL-PVHALVYKPAQADISANVYVSVED--YSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKS  165 (792)
T ss_pred             CCCcEEEEEEecCC-ceeEEEechhHhCccceeEeeccc--ceeeeecccccccceeeeEeeeccccchhhhhhhcCCcc
Confidence            98877766655433 333333322   111122111100  00011111111111     111111100      01345


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEE--ecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEe
Q 001163          604 VQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASI--DADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTV  681 (1134)
Q Consensus       604 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  681 (1134)
                      +.+++.+.+....- +..+.+|+..++......  ....|.-.+++.++||+++++|++..||.|.+|.--..       
T Consensus       166 I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~-------  237 (792)
T KOG1963|consen  166 IVDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS-------  237 (792)
T ss_pred             EEEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc-------
Confidence            77777776655554 467889988875521111  11123444789999999999999999999999963220       


Q ss_pred             ccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCC
Q 001163          682 ESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITE  761 (1134)
Q Consensus       682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~  761 (1134)
                      .                                                               ..+-+..+|.      
T Consensus       238 ~---------------------------------------------------------------~~~~t~t~lH------  248 (792)
T KOG1963|consen  238 S---------------------------------------------------------------DDSETCTLLH------  248 (792)
T ss_pred             c---------------------------------------------------------------cccccceEEE------
Confidence            0                                                               0001122221      


Q ss_pred             ccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCC
Q 001163          762 PSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTN  841 (1134)
Q Consensus       762 ~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  841 (1134)
                                  -|...|.+++|+++|.+|++|+..+.+.+|.+.+                      ++.  ..++.  
T Consensus       249 ------------WH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T----------------------~~k--qfLPR--  290 (792)
T KOG1963|consen  249 ------------WHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET----------------------GKK--QFLPR--  290 (792)
T ss_pred             ------------ecccccceeEEecCCceEeecccceEEEEEeecC----------------------CCc--ccccc--
Confidence                        2788999999999999999999999999997653                      321  11333  


Q ss_pred             CCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCC-----------CCCeEEEEEcCCCCcEEEEEeCCCcE
Q 001163          842 PEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPP-----------PPAATFLAFHPQDNNIIAIGMEDSSI  909 (1134)
Q Consensus       842 h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~-----------~~~v~~l~~sp~~~~~la~g~~dg~i  909 (1134)
                      -.++|..+.+|||+.+.+... |++|.+....+.+...++.+.           .+-.+.++++| ..+.++..+..|.|
T Consensus       291 Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~v  369 (792)
T KOG1963|consen  291 LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHV  369 (792)
T ss_pred             cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceE
Confidence            678999999999999888776 999999988776666555432           22367789998 67788888999999


Q ss_pred             EEEEcccceEEEecc-----------CccCceEEEEEeeCCCEEEEEeC--------CC--cEEEEECCCCccccceeee
Q 001163          910 QIYNVRVDEVKTKLK-----------GHQKRITGLAFSNTLNVLVSSGA--------DS--QLCVWSTDGWEKQASKFLT  968 (1134)
Q Consensus       910 ~iwd~~~~~~~~~l~-----------~h~~~V~~l~~s~d~~~l~s~s~--------Dg--~i~iwd~~~~~~~~~~~~~  968 (1134)
                      ++||+.+.+.+..+.           .+.-.+++++.+-.|.+++|.-.        ||  .+++|-.......-.....
T Consensus       370 Q~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~  449 (792)
T KOG1963|consen  370 QFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTK  449 (792)
T ss_pred             EEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEE
Confidence            999998876654442           12345788888888999998732        33  4788987765544444445


Q ss_pred             ecCCCCCCCCCceEEEEcCCCC-EEEE-EeeceEEEEeCCCcccce--------eeccCCCccCEEEEEEccCCCEEEEE
Q 001163          969 IPNGRTASALADTRVQFHLDQT-HLLA-VHETQIAIYEAPKLECLK--------QFVPREASGPITHATYSCDSQSIYVA 1038 (1134)
Q Consensus       969 ~~~~~~~~~~~v~~l~fs~dg~-~l~~-~~d~~i~iwd~~~~~~~~--------~~~~~~h~~~v~~~~~s~dg~~l~s~ 1038 (1134)
                      +...|..  ..+..+.+++-.. +.++ +.||.++||-....+.+.        .....-|..++++++||.||..|+ +
T Consensus       450 I~~PH~~--~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla-~  526 (792)
T KOG1963|consen  450 INNPHGN--AFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA-V  526 (792)
T ss_pred             EecCCCc--eeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE-E
Confidence            5555553  2233333333333 4555 699999999884333221        111124688999999999997666 5


Q ss_pred             ecCCcEEEeecCC-CcceeecCCCcccCCCCCCCceeEEEEecCC-CCCEEEEEecCCcEEEEeCCCCCCCccC
Q 001163         1039 FEEGSVGVLTAST-LRLRCRINPTAYLPTNPSLRVYPLVIAGNPT-DPNQFALGLTDGGVYIIEPLEAEGRWGT 1110 (1134)
Q Consensus      1039 s~Dg~i~vwd~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~-~~~~l~s~~~Dg~v~vW~~~~~~~~~~~ 1110 (1134)
                      +.|++|.+||..+ .++.+...... .+.      ..+  +|..+ -....++...-+.+.+|++.+....|..
T Consensus       527 s~~~~Itiwd~~~~~~l~~~~~~~~-~~~------~~~--~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~w~~  591 (792)
T KOG1963|consen  527 SFDDTITIWDYDTKNELLCTEGSRN-WPI------AEL--LFTAQTQNDGALVHATQQRLSVWNLLSMSLIWNL  591 (792)
T ss_pred             ecCCEEEEecCCChhhhhccccccc-cch------HhH--hhhcccccccceeeccCceEehHhhhhhheecch
Confidence            5688999999998 55555444222 111      111  11110 1223444555678999999999999933

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=2.6e-23  Score=203.38  Aligned_cols=271  Identities=18%  Similarity=0.277  Sum_probs=214.5

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la  434 (1134)
                      ..+.|++|.|+|.+..|| +++-||++++||+...+...                    .-.|+.++.+++|.+ ...++
T Consensus        12 P~d~IS~v~f~~~~~~LL-vssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~   69 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLL-VSSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIV   69 (323)
T ss_pred             ChhceeeEEEcCcCCcEE-EEeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEE
Confidence            357899999999988765 55699999999998875433                    235899999999987 66789


Q ss_pred             EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEe
Q 001163          435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSIC  514 (1134)
Q Consensus       435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~  514 (1134)
                      +|+-||.|+.+|+.++....    +..|..+|.|+.+++...  .+++||.|++|++||.+.......+.. ...|.++.
T Consensus        70 ~G~~dg~vr~~Dln~~~~~~----igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~  142 (323)
T KOG1036|consen   70 TGGLDGQVRRYDLNTGNEDQ----IGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMD  142 (323)
T ss_pred             EeccCceEEEEEecCCccee----eccCCCceEEEEeeccCC--eEEEcccCccEEEEecccccccccccc-CceEEEEe
Confidence            99999999999999987554    778999999999998776  699999999999999887666655553 34788885


Q ss_pred             ccccCCccEEEEecCCCcEEEEecCCCCceeeecC--CCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCC--CeeE
Q 001163          515 PHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA--PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE--GAVK  590 (1134)
Q Consensus       515 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--~~~~  590 (1134)
                      .    .++.|+.|+.|..|.+||+++.........  -...++++++-|++.-.++++.+  |...+-.+|...  .+..
T Consensus       143 v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSie--GRVavE~~d~s~~~~skk  216 (323)
T KOG1036|consen  143 V----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIE--GRVAVEYFDDSEEAQSKK  216 (323)
T ss_pred             c----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeec--ceEEEEccCCchHHhhhc
Confidence            4    336899999999999999998765553222  22378999999988777777664  344455555441  1333


Q ss_pred             EEecCCCC--------CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEEC
Q 001163          591 RTYHGLGK--------RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTN  662 (1134)
Q Consensus       591 ~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~  662 (1134)
                      ..|+.|..        .+|++++|+|-...|++|+.||.|.+||+.+.+.+..+...  ...|..++|+.+|..||+++.
T Consensus       217 yaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  217 YAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             eeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEEec
Confidence            44555532        26889999999999999999999999999999988888654  557999999999999999874

>PTZ00420 coronin; Provisional

Probab=99.92  E-value=6.9e-23  Score=233.12  Aligned_cols=228  Identities=15%  Similarity=0.232  Sum_probs=181.1

Q ss_pred             EeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecC-CCceEEEEEeCCCeEEEEECCCCc--------eeEEecCC
Q 001163          436 AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP-NKQLSVVTCGEDRVIKVWDAVTGT--------KQYIFEGH  506 (1134)
Q Consensus       436 ~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~-~~~~~l~s~s~d~~i~iwd~~~~~--------~~~~~~~h  506 (1134)
                      |+.++.|++|+......+   ..+.+|.+.|.+++|+|+ +.  +|+||+.|++|+|||+.++.        ++..+.+|
T Consensus        50 GG~~gvI~L~~~~r~~~v---~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH  124 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPV---IKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH  124 (568)
T ss_pred             CCceeEEEeeecCCCceE---EEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence            567889999998765433   368899999999999997 55  79999999999999998642        34567899


Q ss_pred             CcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCC
Q 001163          507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE  586 (1134)
Q Consensus       507 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~  586 (1134)
                      ...|.+++|+|... .++++++.|++|++||+++......+. +...|.+++|+|+|.+|++++.+    ..|++||+++
T Consensus       125 ~~~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D----~~IrIwD~Rs  198 (568)
T PTZ00420        125 KKKISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVG----KHMHIIDPRK  198 (568)
T ss_pred             CCcEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecC----CEEEEEECCC
Confidence            99999999987642 456899999999999999877666554 45689999999999999988754    3599999999


Q ss_pred             CeeEEEecCCCCCc----eEEEEEcCCCCEEEEEeCCC----eEEEEEcCC-CceeEEEecCCCCCCcceEEEcCCCcEE
Q 001163          587 GAVKRTYHGLGKRS----VGVVQFDTTKNRFLAAGDEF----MIKFWDMDN-VNLLASIDADGGLQASPCIRFNKEGILL  657 (1134)
Q Consensus       587 ~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~sp~~~~l  657 (1134)
                      ++.+..+.+|....    +....|++++.++++++.|+    .|++||+++ ++++..+..+.....+......++|.++
T Consensus       199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~  278 (568)
T PTZ00420        199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY  278 (568)
T ss_pred             CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence            99999999887622    12234568899999988664    799999995 6677766655444333334445568899


Q ss_pred             EEEECCCcEEEEEccCC
Q 001163          658 AVSTNDNGIKILANADG  674 (1134)
Q Consensus       658 ~~~~~dg~i~iw~~~~~  674 (1134)
                      ++|+.|+.|++|++..+
T Consensus       279 lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        279 LIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             EEEECCCeEEEEEccCC
Confidence            99999999999999765

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=4.1e-20  Score=206.08  Aligned_cols=278  Identities=14%  Similarity=0.208  Sum_probs=223.8

Q ss_pred             eecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCcc-ceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCC
Q 001163          353 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRE-RIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT  431 (1134)
Q Consensus       353 ~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~  431 (1134)
                      ..|..+-+.|+|.|+|. ++.+++.||.|++|+..... ...                   .+.-++..|.+++.  ++.
T Consensus        10 yaht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~-------------------ti~~~g~~v~~ia~--~s~   67 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPE-------------------TIDISGELVSSIAC--YSN   67 (933)
T ss_pred             hhccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCc-------------------hhhccCceeEEEee--ccc
Confidence            35888899999999999 66889999999999986652 211                   12237778888776  455


Q ss_pred             EEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEE
Q 001163          432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY  511 (1134)
Q Consensus       432 ~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~  511 (1134)
                      +|++|+.+++|.+|.+.+++.-.   .+...+-++++++|+.+|+  +++.||.|-.|++-++.+......+++|.++|.
T Consensus        68 ~f~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl  142 (933)
T KOG1274|consen   68 HFLTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVL  142 (933)
T ss_pred             ceEEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCcee
Confidence            99999999999999999876432   2445667899999999999  899999999999999999999999999999999


Q ss_pred             EEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCC--------CCCeeEEEECcCCCEEEEEecCCCCCeEEEEEe
Q 001163          512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP--------GHSSTMMAYSADGARLFSCGTNKEGESYLVEWN  583 (1134)
Q Consensus       512 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd  583 (1134)
                      ++.|+|  ++.+|++.+-||.|++||+.++.....+..-        ...+..++|+|+|..++..+.+    ..|.+|+
T Consensus       143 ~l~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d----~~Vkvy~  216 (933)
T KOG1274|consen  143 QLSYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD----NTVKVYS  216 (933)
T ss_pred             eeeEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccC----CeEEEEc
Confidence            999865  4489999999999999999977665544321        2256779999997777766654    3599999


Q ss_pred             CCCCeeEEEecCCCCC-ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEEC
Q 001163          584 ESEGAVKRTYHGLGKR-SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTN  662 (1134)
Q Consensus       584 ~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~  662 (1134)
                      ...+.....+...... .+..+.|+|.|.||++++.+|.|.|||.++-+.      |.....|.|++|.|+.+.+-.-..
T Consensus       217 r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~  290 (933)
T KOG1274|consen  217 RKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITA  290 (933)
T ss_pred             cCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEee
Confidence            9999998888765433 388899999999999999999999999998222      344668999999999887766555


Q ss_pred             CCcEEEE
Q 001163          663 DNGIKIL  669 (1134)
Q Consensus       663 dg~i~iw  669 (1134)
                      .|...+|
T Consensus       291 ~g~~~~~  297 (933)
T KOG1274|consen  291 LGTLGVS  297 (933)
T ss_pred             ccccccC
Confidence            5555554

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=3.8e-24  Score=220.71  Aligned_cols=293  Identities=16%  Similarity=0.201  Sum_probs=232.2

Q ss_pred             eeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc
Q 001163          348 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS  427 (1134)
Q Consensus       348 ~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  427 (1134)
                      +.+++|.|..-|.++++|...+++ .||+. |.|+|||+.......             ...+.. ......-|.++..+
T Consensus       411 rq~~tL~HGEvVcAvtIS~~trhV-yTgGk-gcVKVWdis~pg~k~-------------PvsqLd-cl~rdnyiRSckL~  474 (705)
T KOG0639|consen  411 RQINTLAHGEVVCAVTISNPTRHV-YTGGK-GCVKVWDISQPGNKS-------------PVSQLD-CLNRDNYIRSCKLL  474 (705)
T ss_pred             HhhhhhccCcEEEEEEecCCccee-EecCC-CeEEEeeccCCCCCC-------------cccccc-ccCcccceeeeEec
Confidence            456778899999999999999864 67765 779999996542110             001111 22346789999999


Q ss_pred             CCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCC
Q 001163          428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE  507 (1134)
Q Consensus       428 pd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~  507 (1134)
                      |||+.|++|+.-.++.|||+..... +....+..-.-...+++.+||.+  +.+++..||.|.|||+.+...++.|.||.
T Consensus       475 pdgrtLivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGht  551 (705)
T KOG0639|consen  475 PDGRTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT  551 (705)
T ss_pred             CCCceEEeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCC
Confidence            9999999999999999999987652 22223333334577899999999  89999999999999999999999999999


Q ss_pred             cCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC
Q 001163          508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG  587 (1134)
Q Consensus       508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~  587 (1134)
                      ..+.||.++  .+|..|.+|+.|.+||.||++.+........ ...|.++.++|++.+++++-.+.    .+.+.... +
T Consensus       552 DGascIdis--~dGtklWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~dWlavGMens----~vevlh~s-k  623 (705)
T KOG0639|consen  552 DGASCIDIS--KDGTKLWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGDWLAVGMENS----NVEVLHTS-K  623 (705)
T ss_pred             CCceeEEec--CCCceeecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCccceeeecccC----cEEEEecC-C
Confidence            999999884  5668999999999999999998776654433 45899999999999999986543    25444432 3


Q ss_pred             eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEE
Q 001163          588 AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIK  667 (1134)
Q Consensus       588 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~  667 (1134)
                      .....+..|.. .|.++.|.+.|+++++.+.|..+..|...-|..+.....   ...|.++.++.|.+++++|+.|....
T Consensus       624 p~kyqlhlheS-cVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---~SsVlsCDIS~ddkyIVTGSGdkkAT  699 (705)
T KOG0639|consen  624 PEKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKAT  699 (705)
T ss_pred             ccceeeccccc-EEEEEEecccCceeeecCchhhhhhccCccccceeeccc---cCcceeeeeccCceEEEecCCCcceE
Confidence            33344455554 899999999999999999999999999998887776643   56899999999999999999999888


Q ss_pred             EEEc
Q 001163          668 ILAN  671 (1134)
Q Consensus       668 iw~~  671 (1134)
                      +|.+
T Consensus       700 VYeV  703 (705)
T KOG0639|consen  700 VYEV  703 (705)
T ss_pred             EEEE
Confidence            8865

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.92  E-value=1.2e-22  Score=196.18  Aligned_cols=318  Identities=15%  Similarity=0.230  Sum_probs=237.2

Q ss_pred             cceeeeEeCCCCCCcccccCCCCCceeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeec
Q 001163          323 VNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWEL  402 (1134)
Q Consensus       323 ~~i~~~~~s~~~~~l~~~~~d~~~~~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~  402 (1134)
                      ++|+.++.+++...               .-.|.+.|+++.+.+...+++.+|+.||.|.+||+++........+  .-.
T Consensus        25 rRil~L~Ln~d~d~---------------~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l--i~k   87 (397)
T KOG4283|consen   25 RRILSLQLNNDKDF---------------VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL--IAK   87 (397)
T ss_pred             hhhheeeccCCcce---------------eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc--eeh
Confidence            45667777776422               2348899999999997555778999999999999987542211000  000


Q ss_pred             cccCccccccccccCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCC-ceEE
Q 001163          403 GACSMPLQASLSSDYTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK-QLSV  480 (1134)
Q Consensus       403 ~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~-~~~l  480 (1134)
                      ..|....+  --.+|.-.|..+.|-| |...+.+++.|.+++|||.++-+...   .++ -++.|.+-+|||-.. ..++
T Consensus        88 ~~c~v~~~--h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~---~F~-me~~VYshamSp~a~sHcLi  161 (397)
T KOG4283|consen   88 HKCIVAKQ--HENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAV---DFK-MEGKVYSHAMSPMAMSHCLI  161 (397)
T ss_pred             eeeecccc--CCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeE---Eee-cCceeehhhcChhhhcceEE
Confidence            11211111  2478999999999999 77788999999999999999977554   222 456788888888654 4478


Q ss_pred             EEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCC-Cceeee------------
Q 001163          481 VTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL-GSRVDY------------  547 (1134)
Q Consensus       481 ~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~------------  547 (1134)
                      ++|..|-.|++.|+.+|.+-+++.||.+.|.++.|+|..+ -.|++|+.||.|++||++.. ++...+            
T Consensus       162 A~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e-~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~  240 (397)
T KOG4283|consen  162 AAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSE-WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILK  240 (397)
T ss_pred             EEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCce-eEEEecCCCceEEEEEeecccceeEEeecccCccCcccc
Confidence            8888889999999999999999999999999999998765 67899999999999998754 222222            


Q ss_pred             --cCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecC---CCC--CceEEEEEcCCCCEEEEEeCCC
Q 001163          548 --DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG---LGK--RSVGVVQFDTTKNRFLAAGDEF  620 (1134)
Q Consensus       548 --~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~---~~~--~~v~~~~~~~~~~~l~~~~~dg  620 (1134)
                        ..|.+.+..++|+.++.++++++.+.    .+++|+..+|+-...-.+   +.+  ..-..+. +.+...++.--.++
T Consensus       241 ~n~ah~gkvngla~tSd~~~l~~~gtd~----r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~  315 (397)
T KOG4283|consen  241 TNTAHYGKVNGLAWTSDARYLASCGTDD----RIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDG  315 (397)
T ss_pred             ccccccceeeeeeecccchhhhhccCcc----ceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCC
Confidence              23455789999999999999998643    599999998853221111   111  0111122 33344455555679


Q ss_pred             eEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEc
Q 001163          621 MIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN  671 (1134)
Q Consensus       621 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~  671 (1134)
                      .+.++++-.+..+..+..|  ...+.|.++.|+-+...++..|+.+..|..
T Consensus       316 ~lall~~~sgs~ir~l~~h--~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  316 SLALLNLLEGSFVRRLSTH--LKRINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             eEEEEEccCceEEEeeecc--cceeeEEeecCchhhhhccccCCccccccc
Confidence            9999999999999999977  568999999999999999999999999976

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.91  E-value=5.2e-23  Score=212.13  Aligned_cols=265  Identities=14%  Similarity=0.234  Sum_probs=212.7

Q ss_pred             eeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc
Q 001163          348 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS  427 (1134)
Q Consensus       348 ~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  427 (1134)
                      +..+.+.|.+.|+.+.+-|....++|+++..+.|.|||...-.-....         .+.-.+...+.||+..=+.++|+
T Consensus       116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~---------~~~~~Pdl~L~gH~~eg~glsWn  186 (422)
T KOG0264|consen  116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA---------SGECRPDLRLKGHEKEGYGLSWN  186 (422)
T ss_pred             EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc---------cccCCCceEEEeecccccccccc
Confidence            345567799999999999999999999999999999998764432210         00111222478999988999999


Q ss_pred             C-CCCEEEEEeCCCEEEEEEccCCce----eeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECC--CCcee
Q 001163          428 P-DGTLFGVAYSKHIVHLYTYHGGDE----LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV--TGTKQ  500 (1134)
Q Consensus       428 p-d~~~las~s~dg~v~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~--~~~~~  500 (1134)
                      + ..-.|++|+.|++|++||+.....    +.....+.+|+..|..++|++-... ++++++.|+.+.|||++  +.++.
T Consensus       187 ~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~  265 (422)
T KOG0264|consen  187 RQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPS  265 (422)
T ss_pred             cccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCc
Confidence            9 556899999999999999976443    4555678999999999999998777 79999999999999999  56667


Q ss_pred             EEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCc-eeeecCCCCCeeEEEECcCCCEE-EEEecCCCCCeE
Q 001163          501 YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS-RVDYDAPGHSSTMMAYSADGARL-FSCGTNKEGESY  578 (1134)
Q Consensus       501 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l-~~~~~~~~~~~~  578 (1134)
                      ....+|.++|+|++|+|-. +.+||+||.|++|.+||+++... ...+..|...|..+.|+|....+ ++++.    ++.
T Consensus       266 ~~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~----D~r  340 (422)
T KOG0264|consen  266 HSVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT----DRR  340 (422)
T ss_pred             ccccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc----CCc
Confidence            7888999999999998865 48999999999999999998654 45678888899999999987655 44443    446


Q ss_pred             EEEEeCCCC--------------eeEEEecCCCCCceEEEEEcCCCCEEE-EEeCCCeEEEEEcC
Q 001163          579 LVEWNESEG--------------AVKRTYHGLGKRSVGVVQFDTTKNRFL-AAGDEFMIKFWDMD  628 (1134)
Q Consensus       579 i~~wd~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~  628 (1134)
                      +.+||+..-              +++..-.||.. .|..+.|+|...+++ +.++|+.+.||.+.
T Consensus       341 l~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  341 LNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             EEEEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            999998642              22345556665 899999999987655 56699999999975

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.91  E-value=3.3e-23  Score=213.90  Aligned_cols=282  Identities=12%  Similarity=0.141  Sum_probs=226.5

Q ss_pred             ccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC
Q 001163          775 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN  854 (1134)
Q Consensus       775 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d  854 (1134)
                      |..-|.++++|...+.+.+|+. |.|+|||+....                   +...+. .+.+......|+.+.+.||
T Consensus       418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg-------------------~k~Pvs-qLdcl~rdnyiRSckL~pd  476 (705)
T KOG0639|consen  418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPG-------------------NKSPVS-QLDCLNRDNYIRSCKLLPD  476 (705)
T ss_pred             cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCC-------------------CCCccc-cccccCcccceeeeEecCC
Confidence            7888999999999998888775 689999987531                   111100 1222225678899999999


Q ss_pred             CCeEEEee-CCeEEEEEccCCe--EEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceE
Q 001163          855 DSYVMSAS-GGKISLFNMMTFK--TMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRIT  931 (1134)
Q Consensus       855 g~~la~~s-dg~i~lwd~~~~~--~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~  931 (1134)
                      |+.|++|+ -.++.|||+..-.  ...++......+.+++.+| |.++.+++..||.|.|||+.+...++.|+||.+.+.
T Consensus       477 grtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGas  555 (705)
T KOG0639|consen  477 GRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS  555 (705)
T ss_pred             CceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCce
Confidence            99999998 5789999997544  3334444446788999999 899999999999999999999999999999999999


Q ss_pred             EEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-eeceEEEEeCCCccc
Q 001163          932 GLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLEC 1010 (1134)
Q Consensus       932 ~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~iwd~~~~~~ 1010 (1134)
                      ||.+++||..|.|||-|.+|+-||+..++...     .....    +.|.++...|.+.+|++| .++.+.|......+.
T Consensus       556 cIdis~dGtklWTGGlDntvRcWDlregrqlq-----qhdF~----SQIfSLg~cP~~dWlavGMens~vevlh~skp~k  626 (705)
T KOG0639|consen  556 CIDISKDGTKLWTGGLDNTVRCWDLREGRQLQ-----QHDFS----SQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK  626 (705)
T ss_pred             eEEecCCCceeecCCCccceeehhhhhhhhhh-----hhhhh----hhheecccCCCccceeeecccCcEEEEecCCccc
Confidence            99999999999999999999999999866322     11111    568999999999999998 667888887764443


Q ss_pred             ceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEE
Q 001163         1011 LKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALG 1090 (1134)
Q Consensus      1011 ~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~ 1090 (1134)
                       .++  .-|.+.|.++.|++.|+++++.+.|+.+-.|...-|..+....        -++.|.+..|++   |.+++++|
T Consensus       627 -yql--hlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk--------E~SsVlsCDIS~---ddkyIVTG  692 (705)
T KOG0639|consen  627 -YQL--HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--------ESSSVLSCDISF---DDKYIVTG  692 (705)
T ss_pred             -eee--cccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc--------ccCcceeeeecc---CceEEEec
Confidence             222  3689999999999999999999999999999999888775544        246688887764   67999999


Q ss_pred             ecCCcEEEEeC
Q 001163         1091 LTDGGVYIIEP 1101 (1134)
Q Consensus      1091 ~~Dg~v~vW~~ 1101 (1134)
                      +.|..--||.+
T Consensus       693 SGdkkATVYeV  703 (705)
T KOG0639|consen  693 SGDKKATVYEV  703 (705)
T ss_pred             CCCcceEEEEE
Confidence            99988888765

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.3e-22  Score=223.90  Aligned_cols=285  Identities=16%  Similarity=0.178  Sum_probs=219.4

Q ss_pred             cccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcC
Q 001163          774 LTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSK  853 (1134)
Q Consensus       774 ~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~  853 (1134)
                      .|....+.++|.|+|.+|++++.||.|++|+.....                  +....+.  .    +...|.+++.  
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~------------------e~P~ti~--~----~g~~v~~ia~--   64 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE------------------EEPETID--I----SGELVSSIAC--   64 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc------------------cCCchhh--c----cCceeEEEee--
Confidence            377788999999999999999999999999755311                  1111111  1    4455666655  


Q ss_pred             CCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEE
Q 001163          854 NDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITG  932 (1134)
Q Consensus       854 dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~  932 (1134)
                      ++.++++++ +++|.+|.+.+++.-..+....-++++++|+. +|+++|.|++|-.|++.+..+......+++|.++|.+
T Consensus        65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~  143 (933)
T KOG1274|consen   65 YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ  143 (933)
T ss_pred             cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceee
Confidence            445888888 89999999988876655555667899999999 9999999999999999999999989999999999999


Q ss_pred             EEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCcccc
Q 001163          933 LAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLECL 1011 (1134)
Q Consensus       933 l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~~~~ 1011 (1134)
                      |.|+|.+.+||+.+.||.|++||++++....................+..++|+|+|..+++ +.|+.|.+|+..+.+..
T Consensus       144 l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~  223 (933)
T KOG1274|consen  144 LSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ  223 (933)
T ss_pred             eeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeh
Confidence            99999999999999999999999998765442221111111111245788999999555555 89999999999999998


Q ss_pred             eeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEe
Q 001163         1012 KQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGL 1091 (1134)
Q Consensus      1012 ~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~ 1091 (1134)
                      ..+....|...+..+.|||+|+|||+++.||.|.|||.++-+. ...          ...|..  ++|.| +.+-+-...
T Consensus       224 f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~~~----------~~~Vc~--~aw~p-~~n~it~~~  289 (933)
T KOG1274|consen  224 FKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-HEF----------KRAVCC--EAWKP-NANAITLIT  289 (933)
T ss_pred             eeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-ccc----------cceeEE--EecCC-CCCeeEEEe
Confidence            8888766777799999999999999999999999999998322 111          133444  48888 455555555


Q ss_pred             cCCcEEEE
Q 001163         1092 TDGGVYII 1099 (1134)
Q Consensus      1092 ~Dg~v~vW 1099 (1134)
                      .-|+.-+|
T Consensus       290 ~~g~~~~~  297 (933)
T KOG1274|consen  290 ALGTLGVS  297 (933)
T ss_pred             eccccccC
Confidence            55554444

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.5e-22  Score=208.78  Aligned_cols=225  Identities=14%  Similarity=0.151  Sum_probs=191.7

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECC-
Q 001163          417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV-  495 (1134)
Q Consensus       417 h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~-  495 (1134)
                      -.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+.   .+.+|-..|+|+.|+.||.  +|+|||.||.|.+|++. 
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~  154 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTD  154 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEe
Confidence            45689999999999999999999999999999999876   5789999999999999999  89999999999999864 


Q ss_pred             --------CCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEE
Q 001163          496 --------TGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLF  567 (1134)
Q Consensus       496 --------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  567 (1134)
                              +-++++.|..|.-+|+++...+.+-..+++++|.|.++++||+..+.....+.. ...+.+++++|-++.++
T Consensus       155 lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~y  233 (476)
T KOG0646|consen  155 LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVY  233 (476)
T ss_pred             ecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEE
Confidence                    336778899999999999987765567999999999999999998776666554 45789999999999999


Q ss_pred             EEecCCCCCeEEEEEeCCC----------------CeeEEEecCCCC-CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 001163          568 SCGTNKEGESYLVEWNESE----------------GAVKRTYHGLGK-RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV  630 (1134)
Q Consensus       568 ~~~~~~~~~~~i~~wd~~~----------------~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  630 (1134)
                      +|+.++    .|.+.++..                +..+..+.+|.+ ..|++++++-||..|++|+.||.++|||..+.
T Consensus       234 iGt~~G----~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~  309 (476)
T KOG0646|consen  234 IGTEEG----KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK  309 (476)
T ss_pred             ecCCcc----eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence            987643    466655432                234566777765 58999999999999999999999999999999


Q ss_pred             ceeEEEecCCCCCCcceEEEcCC
Q 001163          631 NLLASIDADGGLQASPCIRFNKE  653 (1134)
Q Consensus       631 ~~~~~~~~~~~~~~v~~v~~sp~  653 (1134)
                      ++++++...  .++|+.+.+.|-
T Consensus       310 Q~iRtl~~~--kgpVtnL~i~~~  330 (476)
T KOG0646|consen  310 QCIRTLQTS--KGPVTNLQINPL  330 (476)
T ss_pred             HHHHHHhhh--ccccceeEeecc
Confidence            999988743  567888888764

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=4.2e-22  Score=194.45  Aligned_cols=297  Identities=13%  Similarity=0.174  Sum_probs=220.5

Q ss_pred             CCceeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEE
Q 001163          345 LPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRV  424 (1134)
Q Consensus       345 ~~~~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  424 (1134)
                      .|.++..++.+.. -.|+.||+.|. ++|+|..||.|.|||+.+...-+                   ++.+|..+|+++
T Consensus        13 ~PEel~~tld~~~-a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar-------------------~lsaH~~pi~sl   71 (405)
T KOG1273|consen   13 YPEELTHTLDNPL-AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIAR-------------------MLSAHVRPITSL   71 (405)
T ss_pred             ChHhhceeccCCc-cceEEeccCcc-eeeeeccCCcEEEEEccccchhh-------------------hhhccccceeEE
Confidence            3456667777666 88999999998 56999999999999998865322                   478999999999


Q ss_pred             EEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEec
Q 001163          425 MWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE  504 (1134)
Q Consensus       425 ~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  504 (1134)
                      +||+||++|+++|.|..|.+||+..|..++...    ...+|+.+.|+|...+..++ +-.+..-.+-++..++...--.
T Consensus        72 ~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir----f~spv~~~q~hp~k~n~~va-~~~~~sp~vi~~s~~~h~~Lp~  146 (405)
T KOG1273|consen   72 CWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR----FDSPVWGAQWHPRKRNKCVA-TIMEESPVVIDFSDPKHSVLPK  146 (405)
T ss_pred             EecCCCCEeeeecCCceeEEEeccCCCceeEEE----ccCccceeeeccccCCeEEE-EEecCCcEEEEecCCceeeccC
Confidence            999999999999999999999999999776432    56789999999987763444 4444445555555432211111


Q ss_pred             CCCcC--EEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCC-CCeeEEEECcCCCEEEEEecCCCCCeEEEE
Q 001163          505 GHESP--VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG-HSSTMMAYSADGARLFSCGTNKEGESYLVE  581 (1134)
Q Consensus       505 ~h~~~--v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~  581 (1134)
                      ...+.  +..-+-.++..|+++++|...|.+.++|..+.++...+.... ..|..+.++..|+.++..+.|    ..|+.
T Consensus       147 d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsD----RvIR~  222 (405)
T KOG1273|consen  147 DDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSD----RVIRT  222 (405)
T ss_pred             CCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCC----ceEEE
Confidence            11111  111111235667999999999999999999988887776655 688999999999999998764    46999


Q ss_pred             EeCCCC-------ee--EEEecC-CCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceEEE
Q 001163          582 WNESEG-------AV--KRTYHG-LGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRF  650 (1134)
Q Consensus       582 wd~~~~-------~~--~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  650 (1134)
                      |+++.-       ++  .+++.. -....-.+++|+.+|.++++++ ....++||....|.+++.+.+..+ .....+.|
T Consensus       223 ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg-E~l~DV~w  301 (405)
T KOG1273|consen  223 YEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG-EELLDVNW  301 (405)
T ss_pred             EehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch-hheeeccc
Confidence            987621       11  111111 0111345689999999999888 556899999999999999976543 35678999


Q ss_pred             cCCCcEEEEEECCCcEEEEEccC
Q 001163          651 NKEGILLAVSTNDNGIKILANAD  673 (1134)
Q Consensus       651 sp~~~~l~~~~~dg~i~iw~~~~  673 (1134)
                      +|-...+++- ..|.+++|....
T Consensus       302 hp~rp~i~si-~sg~v~iw~~~~  323 (405)
T KOG1273|consen  302 HPVRPIIASI-ASGVVYIWAVVQ  323 (405)
T ss_pred             ccceeeeeec-cCCceEEEEeec
Confidence            9988888777 789999998654

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=4.8e-22  Score=204.25  Aligned_cols=289  Identities=13%  Similarity=0.217  Sum_probs=234.0

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCC-EE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT-LF  433 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~-~l  433 (1134)
                      ..++|++|.|+|.-. ++.+++.||+++||.++........++                 .--..+|.+.+|.|+|. .+
T Consensus       212 s~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS~-----------------~l~~fPi~~a~f~p~G~~~i  273 (514)
T KOG2055|consen  212 SHGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQSI-----------------HLEKFPIQKAEFAPNGHSVI  273 (514)
T ss_pred             CcCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhheee-----------------eeccCccceeeecCCCceEE
Confidence            357999999999998 678999999999999976543221111                 12356999999999999 89


Q ss_pred             EEEeCCCEEEEEEccCCceeeeeeeeecCC-CCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEE
Q 001163          434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHV-GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS  512 (1134)
Q Consensus       434 as~s~dg~v~iwd~~~~~~~~~~~~l~~h~-~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~  512 (1134)
                      ++++.....+.||+.+.+.. +...+.++. ..+.....+++++  +|+..|..|.|.+....+++.+.+++ -.+.|..
T Consensus       274 ~~s~rrky~ysyDle~ak~~-k~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~  349 (514)
T KOG2055|consen  274 FTSGRRKYLYSYDLETAKVT-KLKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSD  349 (514)
T ss_pred             EecccceEEEEeeccccccc-cccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEee
Confidence            99999999999999998744 344456665 3577888899999  89999999999999999999999887 5678999


Q ss_pred             EeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCC-CeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCC-----
Q 001163          513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH-SSTMMAYSADGARLFSCGTNKEGESYLVEWNESE-----  586 (1134)
Q Consensus       513 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-----  586 (1134)
                      ++|+  .++..|++++.+|.|.+||++...+...+...+. .-++++.++++.++++|+.    .+.|-|||..+     
T Consensus       350 ~~fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~  423 (514)
T KOG2055|consen  350 FTFS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFAST  423 (514)
T ss_pred             EEEe--cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccC
Confidence            9986  5558898899999999999999887777766554 5578888999999999975    44689999653     


Q ss_pred             -CeeEEEecCCCCCceEEEEEcCCCCEEEEEe--CCCeEEEEEcCCCceeEEEecC-CCCCCcceEEEcCCCcEEEEEEC
Q 001163          587 -GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG--DEFMIKFWDMDNVNLLASIDAD-GGLQASPCIRFNKEGILLAVSTN  662 (1134)
Q Consensus       587 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~l~~~~~  662 (1134)
                       .+++..+..-.. .|+++.|+++...|+.++  .+..+++-++.+......++.. ...+.|+|++|+|.+.++|.|..
T Consensus       424 ~PkPik~~dNLtt-~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe  502 (514)
T KOG2055|consen  424 NPKPIKTVDNLTT-AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE  502 (514)
T ss_pred             CCCchhhhhhhhe-eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecC
Confidence             356666655554 799999999999999888  5678999998877666555432 23456899999999999999999


Q ss_pred             CCcEEEEEcc
Q 001163          663 DNGIKILANA  672 (1134)
Q Consensus       663 dg~i~iw~~~  672 (1134)
                      +|.+.+|.+.
T Consensus       503 ~grv~l~kL~  512 (514)
T KOG2055|consen  503 AGRVHLFKLH  512 (514)
T ss_pred             CCceeeEeec
Confidence            9999999864

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=6.1e-22  Score=204.29  Aligned_cols=294  Identities=16%  Similarity=0.209  Sum_probs=218.9

Q ss_pred             CeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCC
Q 001163          576 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG  654 (1134)
Q Consensus       576 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~  654 (1134)
                      ...+.+||+++|....+|++.....-.++..- .+.+++++. .-..|.+|.+..........  --.+.|.+++-+|+|
T Consensus        17 ~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~--v~Pg~v~al~s~n~G   93 (476)
T KOG0646|consen   17 PINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYI--VLPGPVHALASSNLG   93 (476)
T ss_pred             CcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhc--ccccceeeeecCCCc
Confidence            34489999999999999987632122222211 235777766 55689999998766555222  224578999999999


Q ss_pred             cEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCc
Q 001163          655 ILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSR  734 (1134)
Q Consensus       655 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  734 (1134)
                      .+|+.|+..|.|++|.+.+| .++..+                                                     
T Consensus        94 ~~l~ag~i~g~lYlWelssG-~LL~v~-----------------------------------------------------  119 (476)
T KOG0646|consen   94 YFLLAGTISGNLYLWELSSG-ILLNVL-----------------------------------------------------  119 (476)
T ss_pred             eEEEeecccCcEEEEEeccc-cHHHHH-----------------------------------------------------
Confidence            99999999999999999988 222221                                                     


Q ss_pred             cCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCccc
Q 001163          735 NFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTG  814 (1134)
Q Consensus       735 ~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~  814 (1134)
                                                            ..|...|+++.|+.||..+++++.||.|.+|.+..-....+.
T Consensus       120 --------------------------------------~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~  161 (476)
T KOG0646|consen  120 --------------------------------------SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADND  161 (476)
T ss_pred             --------------------------------------HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccC
Confidence                                                  128889999999999999999999999999987632100000


Q ss_pred             ccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCC--CeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEE
Q 001163          815 KATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKND--SYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLA  891 (1134)
Q Consensus       815 ~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg--~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~  891 (1134)
                                   .+-..+. .+.  .|.-+|+++...+.|  .+|++++ |.++++||+..+..+.++. .+..+.+++
T Consensus       162 -------------~~~~p~~-~f~--~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~  224 (476)
T KOG0646|consen  162 -------------HSVKPLH-IFS--DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVA  224 (476)
T ss_pred             -------------CCcccee-eec--cCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEE
Confidence                         0001111 133  389999999887653  5788888 9999999999999998876 667899999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEEccc----------------ceEEEeccCccC--ceEEEEEeeCCCEEEEEeCCCcEEE
Q 001163          892 FHPQDNNIIAIGMEDSSIQIYNVRV----------------DEVKTKLKGHQK--RITGLAFSNTLNVLVSSGADSQLCV  953 (1134)
Q Consensus       892 ~sp~~~~~la~g~~dg~i~iwd~~~----------------~~~~~~l~~h~~--~V~~l~~s~d~~~l~s~s~Dg~i~i  953 (1134)
                      .+| .++.+.+|+.+|.|.+.++..                +..+..+.||.+  +|+|++++-||..|++|+.||+|+|
T Consensus       225 lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~Vcv  303 (476)
T KOG0646|consen  225 LDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCV  303 (476)
T ss_pred             Ecc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEE
Confidence            999 899999999999999987643                234567789998  9999999999999999999999999


Q ss_pred             EECCCCccccceeeeecCCCCCCCCCceEEEEcCCCC
Q 001163          954 WSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQT  990 (1134)
Q Consensus       954 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~  990 (1134)
                      ||+.+.+..+..  ....      ++|+.+.+.|-.+
T Consensus       304 Wdi~S~Q~iRtl--~~~k------gpVtnL~i~~~~~  332 (476)
T KOG0646|consen  304 WDIYSKQCIRTL--QTSK------GPVTNLQINPLER  332 (476)
T ss_pred             EecchHHHHHHH--hhhc------cccceeEeecccc
Confidence            999986533321  1111      4577788765433

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=1.9e-21  Score=190.55  Aligned_cols=243  Identities=16%  Similarity=0.126  Sum_probs=188.1

Q ss_pred             ccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEEC
Q 001163          415 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDA  494 (1134)
Q Consensus       415 ~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~  494 (1134)
                      ......|..+.|+|.+..|++++.||++++||+.......    .-.|..++.+++|.++.+   +++|+.||.|+.+|+
T Consensus        10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dl   82 (323)
T KOG1036|consen   10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDL   82 (323)
T ss_pred             CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEe
Confidence            3457899999999999999999999999999999875332    234999999999998665   899999999999999


Q ss_pred             CCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCC
Q 001163          495 VTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKE  574 (1134)
Q Consensus       495 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~  574 (1134)
                      .++.... +..|..+|.||.+.+..  ..+++|+.|++|++||.+.......+.. ...|.++..  .|+.|++++.+  
T Consensus        83 n~~~~~~-igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~g~~LvVg~~~--  154 (323)
T KOG1036|consen   83 NTGNEDQ-IGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--SGNRLVVGTSD--  154 (323)
T ss_pred             cCCccee-eccCCCceEEEEeeccC--CeEEEcccCccEEEEecccccccccccc-CceEEEEec--cCCEEEEeecC--
Confidence            8887654 55699999999987655  5799999999999999986444444333 336766655  46677776643  


Q ss_pred             CCeEEEEEeCCCCeeEEE-ecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC----ceeEEEecCCC-------C
Q 001163          575 GESYLVEWNESEGAVKRT-YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV----NLLASIDADGG-------L  642 (1134)
Q Consensus       575 ~~~~i~~wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~-------~  642 (1134)
                        ..+.+||+++...... ....-+..++++++-|++.-+++++-||.|.+=.++..    +.-..+..|..       .
T Consensus       155 --r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~  232 (323)
T KOG1036|consen  155 --RKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEII  232 (323)
T ss_pred             --ceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEE
Confidence              3599999987654332 22222336889999999999999999999988666654    22333333321       2


Q ss_pred             CCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163          643 QASPCIRFNKEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       643 ~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      .+|++++|+|-...+++|+.||.|.+||+.+.
T Consensus       233 yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r  264 (323)
T KOG1036|consen  233 YPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR  264 (323)
T ss_pred             EEeceeEeccccceEEecCCCceEEEccCcch
Confidence            36899999999899999999999999998766

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.90  E-value=3.2e-22  Score=206.37  Aligned_cols=253  Identities=18%  Similarity=0.277  Sum_probs=204.7

Q ss_pred             ccCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEEccCCcee-------eeeeeeecCCCCEEEEEEecCCCceEEEEEeCC
Q 001163          415 SDYTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDEL-------RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED  486 (1134)
Q Consensus       415 ~~h~~~V~~l~~sp-d~~~las~s~dg~v~iwd~~~~~~~-------~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d  486 (1134)
                      ..|.+.|+.+.+-| +...+|+++..+.|.|||..+-...       ++...|.||.+.=.+++|++.... .|++++.|
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~d  199 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSDD  199 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccCC
Confidence            45999999999999 5667788889999999998753322       233368899998889999998766 79999999


Q ss_pred             CeEEEEECCCCc-------eeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecC--CCCceeeecCCCCCeeEE
Q 001163          487 RVIKVWDAVTGT-------KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD--NLGSRVDYDAPGHSSTMM  557 (1134)
Q Consensus       487 ~~i~iwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~--~~~~~~~~~~~~~~v~~~  557 (1134)
                      ++|++||+....       ....+.+|...|..++|++... .++++++.|+.+.|||.+  +.+.......|..++.++
T Consensus       200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~  278 (422)
T KOG0264|consen  200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCV  278 (422)
T ss_pred             CcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEE
Confidence            999999987543       2456889999999999998765 789999999999999999  455566677788899999


Q ss_pred             EECcCCC-EEEEEecCCCCCeEEEEEeCCCC-eeEEEecCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCce--
Q 001163          558 AYSADGA-RLFSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNL--  632 (1134)
Q Consensus       558 ~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~--  632 (1134)
                      +|+|-+. .||+++.|    .+|.+||++.- +++.++.+|.. .|..+.|+|.. ..|++++.|+.+.|||+..-..  
T Consensus       279 ~fnp~~~~ilAT~S~D----~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq  353 (422)
T KOG0264|consen  279 AFNPFNEFILATGSAD----KTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ  353 (422)
T ss_pred             EeCCCCCceEEeccCC----CcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence            9999655 55666554    46999999875 57788899987 89999999987 5677777999999999864222  


Q ss_pred             ----------eEEEecCCCCCCcceEEEcCCC-cEEEEEECCCcEEEEEccCC
Q 001163          633 ----------LASIDADGGLQASPCIRFNKEG-ILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       633 ----------~~~~~~~~~~~~v~~v~~sp~~-~~l~~~~~dg~i~iw~~~~~  674 (1134)
                                -..+...||...|..+.|+|+. ..|++.++|+.+.||.....
T Consensus       354 ~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~  406 (422)
T KOG0264|consen  354 SPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN  406 (422)
T ss_pred             ChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence                      2224455778899999999976 46778899999999987643

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=2.2e-22  Score=189.72  Aligned_cols=252  Identities=18%  Similarity=0.232  Sum_probs=200.3

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC--CCCE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGTL  432 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~~~  432 (1134)
                      |.+.|..+...--|++ |||++.|++|+|+.+.++....                ....|.||+++|..++|-.  -|.+
T Consensus        10 H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G~i   72 (299)
T KOG1332|consen   10 HEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFGTI   72 (299)
T ss_pred             hhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccCcE
Confidence            8888888888888985 5999999999999998765311                1113899999999999976  8999


Q ss_pred             EEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC---ceeEEecCCCcC
Q 001163          433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG---TKQYIFEGHESP  509 (1134)
Q Consensus       433 las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~---~~~~~~~~h~~~  509 (1134)
                      ||+++.||.|.||.-.+|+ ..+......|+..|++++|.|.+-.+.|++++.||.|.|.+.++.   ........|.-.
T Consensus        73 LAScsYDgkVIiWke~~g~-w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G  151 (299)
T KOG1332|consen   73 LASCSYDGKVIIWKEENGR-WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG  151 (299)
T ss_pred             eeEeecCceEEEEecCCCc-hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc
Confidence            9999999999999998884 444556788999999999999988889999999999999987754   122345679999


Q ss_pred             EEEEeccccCC-c-----------cEEEEecCCCcEEEEecCCCCc--eeeecCCCCCeeEEEECcCC----CEEEEEec
Q 001163          510 VYSICPHHKEN-I-----------QFIFSTATDGKIKAWLYDNLGS--RVDYDAPGHSSTMMAYSADG----ARLFSCGT  571 (1134)
Q Consensus       510 v~~~~~~~~~~-~-----------~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~~~----~~l~~~~~  571 (1134)
                      |++++|.|..- |           ..|++|+.|..|+||+.+...-  ...+..|...|+.++|.|.-    .+|++++.
T Consensus       152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq  231 (299)
T KOG1332|consen  152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ  231 (299)
T ss_pred             cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecC
Confidence            99999987621 1           5699999999999999887532  23367788899999999965    47888876


Q ss_pred             CCCCCeEEEEEeCCCC--eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 001163          572 NKEGESYLVEWNESEG--AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMD  628 (1134)
Q Consensus       572 ~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  628 (1134)
                      |+    .+.||....-  ....++...-...+..+.|+..|+.|+.++.|+.|.+|.-.
T Consensus       232 Dg----~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  232 DG----TVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             CC----cEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            54    5888876521  12222222222378999999999999999999999999754

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.89  E-value=1e-21  Score=201.70  Aligned_cols=294  Identities=17%  Similarity=0.211  Sum_probs=224.2

Q ss_pred             cCCCeeEEEEcCCCC-eEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC-CCCE
Q 001163          355 QGSAVKSMDFHPVQQ-ILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTL  432 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~-~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~  432 (1134)
                      +.+.|++++|+|... .++|+|+.-|.|-+||+.+.+......               .++..|.++|.++.|+| +-..
T Consensus       185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------~~f~~hs~~Vs~l~F~P~n~s~  249 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------YLFTPHSGPVSGLKFSPANTSQ  249 (498)
T ss_pred             cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------EEeccCCccccceEecCCChhh
Confidence            789999999999876 799999999999999997444322111               13788999999999999 6678


Q ss_pred             EEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCce-eEEecCCCcCEE
Q 001163          433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK-QYIFEGHESPVY  511 (1134)
Q Consensus       433 las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~h~~~v~  511 (1134)
                      +.+.|.||+|++-|++++. ......+..-...+..+.|+.+..  .++.+..=|...+||.+++.. ...+.-|...|.
T Consensus       250 i~ssSyDGtiR~~D~~~~i-~e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~  326 (498)
T KOG4328|consen  250 IYSSSYDGTIRLQDFEGNI-SEEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT  326 (498)
T ss_pred             eeeeccCceeeeeeecchh-hHHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence            9999999999999998764 222223444556688899998888  577777777999999998765 566777888999


Q ss_pred             EEeccccCCccEEEEecCCCcEEEEecCCCCcee----eecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC--
Q 001163          512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV----DYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES--  585 (1134)
Q Consensus       512 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--  585 (1134)
                      +++++|... .++++++.|++.+|||++......    ....|...|.+..|||.+-.|++.+.|    ..|++||..  
T Consensus       327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D----~~IRv~dss~~  401 (498)
T KOG4328|consen  327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQD----NEIRVFDSSCI  401 (498)
T ss_pred             eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccC----CceEEeecccc
Confidence            999998765 799999999999999998755443    344567799999999998888888764    459999983  


Q ss_pred             --CCeeEEEecCCCCC----ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcc-eEEEcCCCc-EE
Q 001163          586 --EGAVKRTYHGLGKR----SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASP-CIRFNKEGI-LL  657 (1134)
Q Consensus       586 --~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~sp~~~-~l  657 (1134)
                        .-.+..++......    ......|.|+.+++++|-.-..|-|+|-..++.+..+-..... .|. -..|+|-+. ++
T Consensus       402 sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~-tI~~vn~~HP~~~~~~  480 (498)
T KOG4328|consen  402 SAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS-TIPSVNEFHPMRDTLA  480 (498)
T ss_pred             cccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc-ccccceeeccccccee
Confidence              23333333322111    2334689999999999998889999999999988776543222 343 458999887 45


Q ss_pred             EEEECCCcEEEEEcc
Q 001163          658 AVSTNDNGIKILANA  672 (1134)
Q Consensus       658 ~~~~~dg~i~iw~~~  672 (1134)
                      +.++..|.|+||...
T Consensus       481 aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  481 AGGNSSGKIYVFTNK  495 (498)
T ss_pred             ccCCccceEEEEecC
Confidence            555567888888643

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.4e-21  Score=190.81  Aligned_cols=253  Identities=13%  Similarity=0.211  Sum_probs=195.4

Q ss_pred             EEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCcee
Q 001163          421 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ  500 (1134)
Q Consensus       421 V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~  500 (1134)
                      -.|+.||+.|.+||+|..||.|.|||+.+...-+   .+.+|..+|++++||+||+  .|+|+|.|..|.+||+..|.++
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l  100 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL  100 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence            7899999999999999999999999999876433   6889999999999999999  8999999999999999999999


Q ss_pred             EEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCC----CeeEEEECcCCCEEEEEecCCCCC
Q 001163          501 YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH----SSTMMAYSADGARLFSCGTNKEGE  576 (1134)
Q Consensus       501 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~~~~~~~  576 (1134)
                      +.++ ..++|+...|+|......+++-- +..-.+-++........-....+    .-.+..|.+.|+++++|.    +.
T Consensus       101 ~rir-f~spv~~~q~hp~k~n~~va~~~-~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGt----sK  174 (405)
T KOG1273|consen  101 KRIR-FDSPVWGAQWHPRKRNKCVATIM-EESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGT----SK  174 (405)
T ss_pred             eEEE-ccCccceeeeccccCCeEEEEEe-cCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEec----Cc
Confidence            9988 77899999999877655555443 33344555554322221111111    122335889999999985    46


Q ss_pred             eEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-------ce--eEEEecCCCCCCcce
Q 001163          577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV-------NL--LASIDADGGLQASPC  647 (1134)
Q Consensus       577 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~--~~~~~~~~~~~~v~~  647 (1134)
                      +.+.++|..+.+++..++-.....|..+.++..|.+|+.-+.|+.|+.|+...-       ++  .+.++.--+...-++
T Consensus       175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~  254 (405)
T KOG1273|consen  175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK  254 (405)
T ss_pred             ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence            679999999999999887766447889999999999999999999999987621       11  111111111223468


Q ss_pred             EEEcCCCcEEEEEEC-CCcEEEEEccCCceeEEEeccCc
Q 001163          648 IRFNKEGILLAVSTN-DNGIKILANADGIRLLRTVESRT  685 (1134)
Q Consensus       648 v~~sp~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~  685 (1134)
                      ++|+.+|.+++.++. ...++||....| .+++.+.|..
T Consensus       255 ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sLVKILhG~k  292 (405)
T KOG1273|consen  255 CCFSGDGEYVCAGSARAHALYIWEKSIG-SLVKILHGTK  292 (405)
T ss_pred             eeecCCccEEEeccccceeEEEEecCCc-ceeeeecCCc
Confidence            999999999987764 578999999888 7888887754

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.9e-21  Score=199.97  Aligned_cols=249  Identities=15%  Similarity=0.214  Sum_probs=195.5

Q ss_pred             ccccEEEEEEecCCc-eeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcC
Q 001163          775 TAMRVSRLIYTNSGL-AILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSK  853 (1134)
Q Consensus       775 ~~~~i~~l~~spdg~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~  853 (1134)
                      ...+|.+..|.|+|. .+++++.-..++.||+...+.                      ........-....+....+|+
T Consensus       256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~----------------------~k~~~~~g~e~~~~e~FeVSh  313 (514)
T KOG2055|consen  256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV----------------------TKLKPPYGVEEKSMERFEVSH  313 (514)
T ss_pred             ccCccceeeecCCCceEEEecccceEEEEeecccccc----------------------ccccCCCCcccchhheeEecC
Confidence            356788999999999 888888888899997764322                      111111101234677889999


Q ss_pred             CCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccC-ceE
Q 001163          854 NDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQK-RIT  931 (1134)
Q Consensus       854 dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~-~V~  931 (1134)
                      ++++|+..+ .|.|.+....+++.+.+++ ..+.|..++|+. +++.|.+.+.+|.|.+||+....+++++....+ .-+
T Consensus       314 d~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gt  391 (514)
T KOG2055|consen  314 DSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGT  391 (514)
T ss_pred             CCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCcccee
Confidence            999999998 8999999999999999988 678999999998 888888888999999999999988888864322 235


Q ss_pred             EEEEeeCCCEEEEEeCCCcEEEEECCCCcccc-ceeeeecCCCCCCCCCceEEEEcCCCCEEEEE---eeceEEEEeCCC
Q 001163          932 GLAFSNTLNVLVSSGADSQLCVWSTDGWEKQA-SKFLTIPNGRTASALADTRVQFHLDQTHLLAV---HETQIAIYEAPK 1007 (1134)
Q Consensus       932 ~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~---~d~~i~iwd~~~ 1007 (1134)
                      .++.|+++.+||+|+..|.|.|||.++-.... .+.+.....-.   ..|+++.|++|+..||.+   .+..+++-.+..
T Consensus       392 s~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS  468 (514)
T KOG2055|consen  392 SLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPS  468 (514)
T ss_pred             eeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence            78889999999999999999999966521110 11111111111   469999999999999983   567899999998


Q ss_pred             cccceeeccCC-CccCEEEEEEccCCCEEEEEecCCcEEEeecC
Q 001163         1008 LECLKQFVPRE-ASGPITHATYSCDSQSIYVAFEEGSVGVLTAS 1050 (1134)
Q Consensus      1008 ~~~~~~~~~~~-h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~ 1050 (1134)
                      ......|...+ --+.|+|++|||.|.+|+.|..+|.|.+|.+.
T Consensus       469 ~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  469 CTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            88888776543 25689999999999999999999999999863

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.88  E-value=7.2e-20  Score=202.67  Aligned_cols=276  Identities=11%  Similarity=0.056  Sum_probs=202.6

Q ss_pred             EEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEE-EEEeCCCEEEEEEccC
Q 001163          371 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF-GVAYSKHIVHLYTYHG  449 (1134)
Q Consensus       371 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l-as~s~dg~v~iwd~~~  449 (1134)
                      ++++++.|+.|.+||+.+++.+..                   +.++ ..+.+++|+|+++.+ ++++.++.|++||..+
T Consensus         3 ~~~s~~~d~~v~~~d~~t~~~~~~-------------------~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~   62 (300)
T TIGR03866         3 AYVSNEKDNTISVIDTATLEVTRT-------------------FPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT   62 (300)
T ss_pred             EEEEecCCCEEEEEECCCCceEEE-------------------EECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence            678999999999999998876543                   2333 346789999999977 5677889999999998


Q ss_pred             CceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecC
Q 001163          450 GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT  529 (1134)
Q Consensus       450 ~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~  529 (1134)
                      ++...   .+..+.. +..++|+|+++. ++++++.|+.+++||+.+++.+..+.. ...+.+++|++  ++.++++++.
T Consensus        63 ~~~~~---~~~~~~~-~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~--dg~~l~~~~~  134 (300)
T TIGR03866        63 GEVIG---TLPSGPD-PELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP--DGKIVVNTSE  134 (300)
T ss_pred             CcEEE---eccCCCC-ccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC--CCCEEEEEec
Confidence            87554   3443433 567899999984 345566789999999999888877763 23457777754  5578888877


Q ss_pred             CC-cEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCC------CceE
Q 001163          530 DG-KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK------RSVG  602 (1134)
Q Consensus       530 dg-~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~  602 (1134)
                      ++ .+.+||..+........ .......++|+|+++++++++.   .++.|.+||+.+++.+..+..+..      ....
T Consensus       135 ~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  210 (300)
T TIGR03866       135 TTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV  210 (300)
T ss_pred             CCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence            65 56778887655443332 2334577899999998876542   234699999999987776543211      1234


Q ss_pred             EEEEcCCCCEEEEE-eCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEE-ECCCcEEEEEccCCceeEEE
Q 001163          603 VVQFDTTKNRFLAA-GDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS-TNDNGIKILANADGIRLLRT  680 (1134)
Q Consensus       603 ~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~~dg~i~iw~~~~~~~~~~~  680 (1134)
                      .++|+|++++++++ +.++.+.+||..+++.+..+..   ...+.+++|+|+|++|+++ +.+|.|.+||+.++ .....
T Consensus       211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~-~~~~~  286 (300)
T TIGR03866       211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV---GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL-KVIKS  286 (300)
T ss_pred             ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe---CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEE
Confidence            58899999986554 4677899999999887766542   2367899999999999876 46899999999987 55555


Q ss_pred             ec
Q 001163          681 VE  682 (1134)
Q Consensus       681 ~~  682 (1134)
                      ++
T Consensus       287 ~~  288 (300)
T TIGR03866       287 IK  288 (300)
T ss_pred             EE
Confidence            54

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.88  E-value=2e-19  Score=199.15  Aligned_cols=292  Identities=13%  Similarity=0.149  Sum_probs=212.1

Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEE-EEecCCCcEEEEecCCCCceeeecCCCCCeeEE
Q 001163          479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFI-FSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMM  557 (1134)
Q Consensus       479 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~  557 (1134)
                      +++|++.|+.|++||+.+++.+..+..+.. +.+++|++  ++..+ ++++.++.|++||..+.+....+..+ ..+..+
T Consensus         3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~--dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~   78 (300)
T TIGR03866         3 AYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSK--DGKLLYVCASDSDTIQVIDLATGEVIGTLPSG-PDPELF   78 (300)
T ss_pred             EEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECC--CCCEEEEEECCCCeEEEEECCCCcEEEeccCC-CCccEE
Confidence            688999999999999999999998886654 56788765  44555 67788999999999877665544432 345678


Q ss_pred             EECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCC-eEEEEEcCCCceeEEE
Q 001163          558 AYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF-MIKFWDMDNVNLLASI  636 (1134)
Q Consensus       558 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~  636 (1134)
                      +|+|+++.+++++.   .+..+.+||+.+++.+..+....  .+..++|+|++..+++++.++ .+.+||..+++.+..+
T Consensus        79 ~~~~~g~~l~~~~~---~~~~l~~~d~~~~~~~~~~~~~~--~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~  153 (300)
T TIGR03866        79 ALHPNGKILYIANE---DDNLVTVIDIETRKVLAEIPVGV--EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV  153 (300)
T ss_pred             EECCCCCEEEEEcC---CCCeEEEEECCCCeEEeEeeCCC--CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE
Confidence            99999998876543   23469999999988877776432  457799999999999988765 5778899888776655


Q ss_pred             ecCCCCCCcceEEEcCCCcEEEEE-ECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccC
Q 001163          637 DADGGLQASPCIRFNKEGILLAVS-TNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTS  715 (1134)
Q Consensus       637 ~~~~~~~~v~~v~~sp~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  715 (1134)
                      ...   ....+++|+|++++++++ ..++.|++||+.++ .....+..                                
T Consensus       154 ~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~--------------------------------  197 (300)
T TIGR03866       154 LVD---QRPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKITF--------------------------------  197 (300)
T ss_pred             EcC---CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeeee--------------------------------
Confidence            432   245689999999988655 45899999998765 22211110                                


Q ss_pred             cCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeec
Q 001163          716 LGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALA  795 (1134)
Q Consensus       716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~  795 (1134)
                                                                                           ...+.      
T Consensus       198 ---------------------------------------------------------------------~~~~~------  202 (300)
T TIGR03866       198 ---------------------------------------------------------------------EIPGV------  202 (300)
T ss_pred             ---------------------------------------------------------------------ccccc------
Confidence                                                                                 00000      


Q ss_pred             cCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEe--eCCeEEEEEccC
Q 001163          796 SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSA--SGGKISLFNMMT  873 (1134)
Q Consensus       796 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~--sdg~i~lwd~~~  873 (1134)
                      ..                                            .......++|+||+++++++  .++.+.+||..+
T Consensus       203 ~~--------------------------------------------~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~  238 (300)
T TIGR03866       203 HP--------------------------------------------EAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT  238 (300)
T ss_pred             cc--------------------------------------------ccCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence            00                                            00112356788888875544  267899999988


Q ss_pred             CeEEEEecCCCCCeEEEEEcCCCCcEEEEE-eCCCcEEEEEcccceEEEeccCccCceEEEEEee
Q 001163          874 FKTMTTFMPPPPAATFLAFHPQDNNIIAIG-MEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSN  937 (1134)
Q Consensus       874 ~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~  937 (1134)
                      ++....+. +...+.+++|+| ++++|+++ ..+|.|.+||+.+++++.+++.. ...+.++|+|
T Consensus       239 ~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       239 YEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             CcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence            88776654 445789999999 88888776 56899999999999999888765 5558888865

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.88  E-value=2e-20  Score=181.07  Aligned_cols=214  Identities=13%  Similarity=0.170  Sum_probs=172.8

Q ss_pred             cccCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEEccCCceee------------eeeeeecCCCCEEEEEEecCCCceEE
Q 001163          414 SSDYTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDELR------------NHLEIEAHVGSVNDLAFSYPNKQLSV  480 (1134)
Q Consensus       414 ~~~h~~~V~~l~~sp-d~~~las~s~dg~v~iwd~~~~~~~~------------~~~~l~~h~~~V~~v~~s~~~~~~~l  480 (1134)
                      ...|.+.|+++...+ .|+|+++|+.||.|.+||++.....+            ....-.+|.-.|..+.|.|-+.. .+
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG-mF  117 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG-MF  117 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc-ee
Confidence            456999999999999 79999999999999999998644211            11123578899999999997665 78


Q ss_pred             EEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCC-ccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEE
Q 001163          481 VTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKEN-IQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAY  559 (1134)
Q Consensus       481 ~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~  559 (1134)
                      .+++.|.+++|||..+-+....|. ..+.|.+-+++|-.. -.++++|..|-.|++.|+..+.....+.+|...|.++.|
T Consensus       118 tssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W  196 (397)
T KOG4283|consen  118 TSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW  196 (397)
T ss_pred             ecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence            999999999999999988888776 556677767665543 257788888999999999999999999999999999999


Q ss_pred             CcCCCEEEEEecCCCCCeEEEEEeCCCC-eeEEEecCCC-------------CCceEEEEEcCCCCEEEEEeCCCeEEEE
Q 001163          560 SADGARLFSCGTNKEGESYLVEWNESEG-AVKRTYHGLG-------------KRSVGVVQFDTTKNRFLAAGDEFMIKFW  625 (1134)
Q Consensus       560 s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~~~~~dg~i~iw  625 (1134)
                      +|...+++..+   ..++.+++||++.. -+...+..|.             .+.+..++|..++.++++++.|..+++|
T Consensus       197 sp~~e~vLatg---saDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~w  273 (397)
T KOG4283|consen  197 SPSSEWVLATG---SADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVW  273 (397)
T ss_pred             ccCceeEEEec---CCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEe
Confidence            99998866544   23567999999864 3333333332             2368889999999999999999999999


Q ss_pred             EcCCCce
Q 001163          626 DMDNVNL  632 (1134)
Q Consensus       626 d~~~~~~  632 (1134)
                      +..+|+.
T Consensus       274 n~~~G~n  280 (397)
T KOG4283|consen  274 NMESGRN  280 (397)
T ss_pred             ecccCcc
Confidence            9998764

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.88  E-value=7e-20  Score=195.44  Aligned_cols=452  Identities=12%  Similarity=0.143  Sum_probs=283.6

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCce
Q 001163          420 SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK  499 (1134)
Q Consensus       420 ~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~  499 (1134)
                      .|..++|-|||..|+.+..+ .+.+||...|..+.   ++.+|.+.|.|++|+.||+  .++||+.|+.|.+|... -+-
T Consensus        14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llq---tLKgHKDtVycVAys~dGk--rFASG~aDK~VI~W~~k-lEG   86 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQ---PLKGHKDTVYCVAYAKDGK--RFASGSADKSVIIWTSK-LEG   86 (1081)
T ss_pred             chheeEECCCCceEEEecCC-EEEEEeCCCccccc---ccccccceEEEEEEccCCc--eeccCCCceeEEEeccc-ccc
Confidence            89999999999998888655 59999999998776   7999999999999999999  79999999999999843 333


Q ss_pred             eEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEE
Q 001163          500 QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYL  579 (1134)
Q Consensus       500 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i  579 (1134)
                      +..+. |...|.|+.|+|-.  ..|++++.. ..-+|..+.... .. ......+.+.+|..||.+++.|-.++    +|
T Consensus        87 ~LkYS-H~D~IQCMsFNP~~--h~LasCsLs-dFglWS~~qK~V-~K-~kss~R~~~CsWtnDGqylalG~~nG----TI  156 (1081)
T KOG1538|consen   87 ILKYS-HNDAIQCMSFNPIT--HQLASCSLS-DFGLWSPEQKSV-SK-HKSSSRIICCSWTNDGQYLALGMFNG----TI  156 (1081)
T ss_pred             eeeec-cCCeeeEeecCchH--HHhhhcchh-hccccChhhhhH-Hh-hhhheeEEEeeecCCCcEEEEeccCc----eE
Confidence            33443 99999999998766  778888753 455786543221 11 11234788999999999999987543    57


Q ss_pred             EEEeCCCCeeEEEe--cCCCCCceEEEEEcCCC-----CEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcC
Q 001163          580 VEWNESEGAVKRTY--HGLGKRSVGVVQFDTTK-----NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK  652 (1134)
Q Consensus       580 ~~wd~~~~~~~~~~--~~~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp  652 (1134)
                      .+-+- +++....+  ++..+.+|.+++|+|..     ..+++..-..++.++.+. |+.+..-..-  .-...|+.+-+
T Consensus       157 siRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L--~FdP~CisYf~  232 (1081)
T KOG1538|consen  157 SIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRAL--NFDPCCISYFT  232 (1081)
T ss_pred             EeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccC--CCCchhheecc
Confidence            66653 34333333  34445589999999975     456666666677777664 4444322211  11346899999


Q ss_pred             CCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCC
Q 001163          653 EGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSND  732 (1134)
Q Consensus       653 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  732 (1134)
                      +|.++..|+.|+.+.+|.-. | ..+.++.                                                  
T Consensus       233 NGEy~LiGGsdk~L~~fTR~-G-vrLGTvg--------------------------------------------------  260 (1081)
T KOG1538|consen  233 NGEYILLGGSDKQLSLFTRD-G-VRLGTVG--------------------------------------------------  260 (1081)
T ss_pred             CCcEEEEccCCCceEEEeec-C-eEEeecc--------------------------------------------------
Confidence            99999999999999998532 2 1111110                                                  


Q ss_pred             CccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCC-
Q 001163          733 SRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERN-  811 (1134)
Q Consensus       733 ~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~-  811 (1134)
                                                               .....|..++..|+++.++.|+.||++..|++-..... 
T Consensus       261 -----------------------------------------~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~  299 (1081)
T KOG1538|consen  261 -----------------------------------------EQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHG  299 (1081)
T ss_pred             -----------------------------------------ccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhh
Confidence                                                     03467888999999999999999999999887533000 


Q ss_pred             ---------ccc--------------c---------------cc---cCCCCcccCCCCCcccccCCCCCCCCCCeeEEE
Q 001163          812 ---------STG--------------K---------------AT---TNQAPQLWQPPSGILMTNDISDTNPEDAVPCFA  850 (1134)
Q Consensus       812 ---------~~~--------------~---------------~~---~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~  850 (1134)
                               .+.              +               .+   -...+.+|...++........-  ...-...+.
T Consensus       300 ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLpeki~iYel~se~~~~mhY~v--~ekI~kkf~  377 (1081)
T KOG1538|consen  300 LYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLPEKILIYELYSEDLSDMHYRV--KEKIIKKFE  377 (1081)
T ss_pred             hhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheecccceEEEEeccccccccchhHH--HHHHHhhcc
Confidence                     000              0               00   0012333443333322110000  000000111


Q ss_pred             Ec---CCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEE--cCCCCcEEEEEeCCCcEEEEEcccceEEEeccC
Q 001163          851 LS---KNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAF--HPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKG  925 (1134)
Q Consensus       851 ~s---~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~--sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~  925 (1134)
                      +|   -.+..++.+.+..+..+|...- ..++.. -.+-|.-+..  .|-+..-|++|..||.|.-.=+++.-++- +..
T Consensus       378 cSLlVVc~~HiVlCqekrLqClDF~Gv-k~ReW~-M~S~iRYikV~GGP~gREgL~vGlknGqV~kiF~dN~~PiL-l~~  454 (1081)
T KOG1538|consen  378 CSLLVVCANHIVLCQEKRLQCLDFSGV-KEREWQ-MESLIRYIKVIGGPPGREGLLVGLKNGQVLKIFVDNLFPIL-LLK  454 (1081)
T ss_pred             ceEEEEEcCeEEEEcccceeeecccch-hhhhhh-HHHHHHhhhhhcCCCCcceeEEEecCCcEEEEEecCCchhh-eec
Confidence            11   1234455555666666665321 111110 0000111111  12255678889888876544444332222 223


Q ss_pred             ccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCC-EEEEEeeceEEE
Q 001163          926 HQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQT-HLLAVHETQIAI 1002 (1134)
Q Consensus       926 h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~-~l~~~~d~~i~i 1002 (1134)
                      ....|.|+..+...+.||+..+.++..++|+.+++.    .++-        .++.+++|..... +|+.+..|.+.|
T Consensus       455 ~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~el----L~QE--------pg~nSV~wNT~~E~MlcfT~~g~L~V  520 (1081)
T KOG1538|consen  455 QATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKEL----LFQE--------PGANSVAWNTQCEDMLCFTGGGYLNV  520 (1081)
T ss_pred             ccceeEEeeccCCcceEEEEccCCeEEEEEccCCce----Eeec--------CCCceEEeeccccceEEEecCCceEE
Confidence            456799999999999999999999999999999762    2222        2377899987544 444454455444

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=9.6e-23  Score=220.35  Aligned_cols=236  Identities=17%  Similarity=0.314  Sum_probs=212.9

Q ss_pred             cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163          414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD  493 (1134)
Q Consensus       414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd  493 (1134)
                      +..|...|.|+..-..++.+++|+.|..+-+|.+.....+.   .+.+|+.+|.++.|+++..  +|++|+.+|+|++||
T Consensus        24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD   98 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD   98 (825)
T ss_pred             hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence            35689999999997789999999999999999987654433   6899999999999999988  899999999999999


Q ss_pred             CCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCC
Q 001163          494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK  573 (1134)
Q Consensus       494 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~  573 (1134)
                      ++.++.++++.+|...+.++.|+|..  .+.++|+.|+.+++||.+..++...+..|...+..+.|+|+|++++.++.  
T Consensus        99 leeAk~vrtLtgh~~~~~sv~f~P~~--~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e--  174 (825)
T KOG0267|consen   99 LEEAKIVRTLTGHLLNITSVDFHPYG--EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE--  174 (825)
T ss_pred             hhhhhhhhhhhccccCcceeeeccce--EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC--
Confidence            99999999999999999999987655  88999999999999999999999999998888999999999999999875  


Q ss_pred             CCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCC
Q 001163          574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE  653 (1134)
Q Consensus       574 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~  653 (1134)
                        +..+++||...|+....|..|.. .+.++.|+|..-.+..|+.|+++++||+++.+.+......  ...|.+.+|+|+
T Consensus       175 --d~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~  249 (825)
T KOG0267|consen  175 --DNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPD  249 (825)
T ss_pred             --cceeeeecccccccccccccccc-cccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeecCC
Confidence              45699999999999999999987 8899999999989999999999999999988888777654  668999999999


Q ss_pred             CcEEEEEECC
Q 001163          654 GILLAVSTND  663 (1134)
Q Consensus       654 ~~~l~~~~~d  663 (1134)
                      +..+++|...
T Consensus       250 ~~~~~~G~q~  259 (825)
T KOG0267|consen  250 GKIVLSGEQI  259 (825)
T ss_pred             ceeeecCchh
Confidence            9999888665

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=5.6e-21  Score=202.19  Aligned_cols=323  Identities=12%  Similarity=0.167  Sum_probs=234.7

Q ss_pred             cccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEE
Q 001163          412 SLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV  491 (1134)
Q Consensus       412 ~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i  491 (1134)
                      .++.||++.|.||...|.|.+||+|+.||+|+||.+.+|.+++...    -.+.|.||+|+|.+...+|+.+- +..+.|
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~----~d~~I~~vaw~P~~~~~vLAvA~-~~~~~i  468 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ----FDSEIRSVAWNPLSDLCVLAVAV-GECVLI  468 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe----ecceeEEEEecCCCCceeEEEEe-cCceEE
Confidence            4688999999999999999999999999999999999999987542    34579999999998864444444 444777


Q ss_pred             EECCCCceeEEecCCCcCEEEEeccccCCccEEEEe----cCCCcEEEEecCCCC----ceeeecCCCCCeeEEEECcCC
Q 001163          492 WDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFST----ATDGKIKAWLYDNLG----SRVDYDAPGHSSTMMAYSADG  563 (1134)
Q Consensus       492 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----s~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~s~~~  563 (1134)
                      -+..-|..+..-..             .  ..|+++    ..|+.+..|.-....    .+.....+...|..+.|+..|
T Consensus       469 vnp~~G~~~e~~~t-------------~--ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG  533 (733)
T KOG0650|consen  469 VNPIFGDRLEVGPT-------------K--ELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG  533 (733)
T ss_pred             eCccccchhhhcch-------------h--hhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC
Confidence            76554532211100             0  112221    234567788654221    122344567799999999999


Q ss_pred             CEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCC
Q 001163          564 ARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQ  643 (1134)
Q Consensus       564 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  643 (1134)
                      .+|++...++ +...|.|+++...+...-|....+ .+..+.|+|...+|++++. ..|+|||+...+++..+...  ..
T Consensus       534 DYlatV~~~~-~~~~VliHQLSK~~sQ~PF~kskG-~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg--~k  608 (733)
T KOG0650|consen  534 DYLATVMPDS-GNKSVLIHQLSKRKSQSPFRKSKG-LVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTG--SK  608 (733)
T ss_pred             ceEEEeccCC-CcceEEEEecccccccCchhhcCC-ceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcC--Ce
Confidence            9999988764 455688999887766655544444 7889999999999988875 68999999988777766532  45


Q ss_pred             CcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCccc
Q 001163          644 ASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPA  723 (1134)
Q Consensus       644 ~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  723 (1134)
                      .|..++.+|.|..|+.++.|+.+..+|+.-.....+++.                                         
T Consensus       609 wiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr-----------------------------------------  647 (733)
T KOG0650|consen  609 WISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLR-----------------------------------------  647 (733)
T ss_pred             eeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhh-----------------------------------------
Confidence            788999999999999999999999999865532222222                                         


Q ss_pred             ccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEee
Q 001163          724 AAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLW  803 (1134)
Q Consensus       724 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw  803 (1134)
                                                                        -|...+++++|++.-.++++++.||.+.||
T Consensus       648 --------------------------------------------------~H~~avr~Va~H~ryPLfas~sdDgtv~Vf  677 (733)
T KOG0650|consen  648 --------------------------------------------------LHEKAVRSVAFHKRYPLFASGSDDGTVIVF  677 (733)
T ss_pred             --------------------------------------------------hhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence                                                              177888999999999999999999999987


Q ss_pred             ecCCCCCCcccccccCCCCccc-CCCCCcccc--cCCCCCCCCCC----eeEEEEcCCCCeEEEee-CCeEEEE
Q 001163          804 KWPRNERNSTGKATTNQAPQLW-QPPSGILMT--NDISDTNPEDA----VPCFALSKNDSYVMSAS-GGKISLF  869 (1134)
Q Consensus       804 ~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~--~~~~~~~h~~~----v~~v~~s~dg~~la~~s-dg~i~lw  869 (1134)
                      --.                 +| |+....++.  ..+++  |...    |..+.|+|...+|.+++ ||+|++|
T Consensus       678 hg~-----------------VY~Dl~qnpliVPlK~L~g--H~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  678 HGM-----------------VYNDLLQNPLIVPLKRLRG--HEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             eee-----------------eehhhhcCCceEeeeeccC--ceeecccceEeecccCCCceEEecCCCceEEee
Confidence            421                 11 111111111  11233  5444    88899999999999998 9999998

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.87  E-value=1.8e-19  Score=192.30  Aligned_cols=276  Identities=13%  Similarity=0.193  Sum_probs=214.4

Q ss_pred             CCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc
Q 001163          552 HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN  631 (1134)
Q Consensus       552 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  631 (1134)
                      +.|..++|-|||..|+.+..+     .+.+||...|..+.++++|.+ .|.+++|+.||+.+++|+.|..|.+|+..-.-
T Consensus        13 hci~d~afkPDGsqL~lAAg~-----rlliyD~ndG~llqtLKgHKD-tVycVAys~dGkrFASG~aDK~VI~W~~klEG   86 (1081)
T KOG1538|consen   13 HCINDIAFKPDGTQLILAAGS-----RLLVYDTSDGTLLQPLKGHKD-TVYCVAYAKDGKRFASGSADKSVIIWTSKLEG   86 (1081)
T ss_pred             cchheeEECCCCceEEEecCC-----EEEEEeCCCcccccccccccc-eEEEEEEccCCceeccCCCceeEEEecccccc
Confidence            378899999999998887644     499999999999999999998 99999999999999999999999999864322


Q ss_pred             eeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccc
Q 001163          632 LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANAN  711 (1134)
Q Consensus       632 ~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  711 (1134)
                      .+. +   .|.+.|.|+.|+|-...|++++-. ..-+|......                                    
T Consensus        87 ~Lk-Y---SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~------------------------------------  125 (1081)
T KOG1538|consen   87 ILK-Y---SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS------------------------------------  125 (1081)
T ss_pred             eee-e---ccCCeeeEeecCchHHHhhhcchh-hccccChhhhh------------------------------------
Confidence            222 1   457789999999998889887654 44566543220                                    


Q ss_pred             cccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCcee
Q 001163          712 VGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAI  791 (1134)
Q Consensus       712 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l  791 (1134)
                                                             |.                   ......++.+.+|..||.++
T Consensus       126 ---------------------------------------V~-------------------K~kss~R~~~CsWtnDGqyl  147 (1081)
T KOG1538|consen  126 ---------------------------------------VS-------------------KHKSSSRIICCSWTNDGQYL  147 (1081)
T ss_pred             ---------------------------------------HH-------------------hhhhheeEEEeeecCCCcEE
Confidence                                                   00                   00134678899999999999


Q ss_pred             eeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCC-----eEEEee-CCe
Q 001163          792 LALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDS-----YVMSAS-GGK  865 (1134)
Q Consensus       792 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-----~la~~s-dg~  865 (1134)
                      +.|-.||+|.+-+-..+                      ....+.-+| |...+|.+++|+|...     .+++.. ..+
T Consensus       148 alG~~nGTIsiRNk~gE----------------------ek~~I~Rpg-g~Nspiwsi~~~p~sg~G~~di~aV~DW~qT  204 (1081)
T KOG1538|consen  148 ALGMFNGTISIRNKNGE----------------------EKVKIERPG-GSNSPIWSICWNPSSGEGRNDILAVADWGQT  204 (1081)
T ss_pred             EEeccCceEEeecCCCC----------------------cceEEeCCC-CCCCCceEEEecCCCCCCccceEEEEeccce
Confidence            99999999998532211                      111222233 5789999999998643     566666 567


Q ss_pred             EEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEE
Q 001163          866 ISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSS  945 (1134)
Q Consensus       866 i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~  945 (1134)
                      +.++.+ +|+.+..-+.-.-...|+.+.+ +|.++..|+.|+.+.+|. +.|-.+.++.....-|+.++..|+++.++.|
T Consensus       205 LSFy~L-sG~~Igk~r~L~FdP~CisYf~-NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~G  281 (1081)
T KOG1538|consen  205 LSFYQL-SGKQIGKDRALNFDPCCISYFT-NGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVG  281 (1081)
T ss_pred             eEEEEe-cceeecccccCCCCchhheecc-CCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEE
Confidence            777776 5566654444455678999999 999999999999999997 4577777887788899999999999999999


Q ss_pred             eCCCcEEEEECCC
Q 001163          946 GADSQLCVWSTDG  958 (1134)
Q Consensus       946 s~Dg~i~iwd~~~  958 (1134)
                      +.||+|..|++..
T Consensus       282 CqDGTiACyNl~f  294 (1081)
T KOG1538|consen  282 CQDGTIACYNLIF  294 (1081)
T ss_pred             EccCeeehhhhHH
Confidence            9999999998643

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.87  E-value=8.7e-21  Score=202.56  Aligned_cols=289  Identities=16%  Similarity=0.112  Sum_probs=208.0

Q ss_pred             CceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeE
Q 001163          788 GLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKI  866 (1134)
Q Consensus       788 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i  866 (1134)
                      ...|+.+.+||.|.++|.....+.               ++..++..  ..  .|...|..+.|-|....|++++ |.++
T Consensus        64 eHiLavadE~G~i~l~dt~~~~fr---------------~ee~~lk~--~~--aH~nAifDl~wapge~~lVsasGDsT~  124 (720)
T KOG0321|consen   64 EHILAVADEDGGIILFDTKSIVFR---------------LEERQLKK--PL--AHKNAIFDLKWAPGESLLVSASGDSTI  124 (720)
T ss_pred             cceEEEecCCCceeeecchhhhcc---------------hhhhhhcc--cc--cccceeEeeccCCCceeEEEccCCcee
Confidence            456788888999999987654332               11111111  22  3999999999999666788887 8899


Q ss_pred             EEEEccCCeEEEE--ecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccce--------------------------
Q 001163          867 SLFNMMTFKTMTT--FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE--------------------------  918 (1134)
Q Consensus       867 ~lwd~~~~~~~~~--~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~--------------------------  918 (1134)
                      ++||+.+.+++..  +.+|.+.|.+++|.|.+...+++|+.||.|.|||+.-..                          
T Consensus       125 r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~  204 (720)
T KOG0321|consen  125 RPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK  204 (720)
T ss_pred             eeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence            9999999998888  889999999999999888899999999999999985211                          


Q ss_pred             -EEEeccCccCceEE---EEEeeCCCEEEEEeC-CCcEEEEECCCCcccc----ceeeeecCCCCCCCCCceEEEEcCCC
Q 001163          919 -VKTKLKGHQKRITG---LAFSNTLNVLVSSGA-DSQLCVWSTDGWEKQA----SKFLTIPNGRTASALADTRVQFHLDQ  989 (1134)
Q Consensus       919 -~~~~l~~h~~~V~~---l~~s~d~~~l~s~s~-Dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~v~~l~fs~dg  989 (1134)
                       .+.....|...|.+   +.+..|...|||+|. |+.|+|||+.......    ......+. +....-++.++.....|
T Consensus       205 kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t-~skrs~G~~nL~lDssG  283 (720)
T KOG0321|consen  205 KRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPT-HSKRSVGQVNLILDSSG  283 (720)
T ss_pred             ccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccC-cccceeeeEEEEecCCC
Confidence             11222345566666   667789999999988 9999999997743211    11111111 11112456777777888


Q ss_pred             CEEEE-EeeceEEEEeCCCcccceeeccCCC--ccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCC
Q 001163          990 THLLA-VHETQIAIYEAPKLECLKQFVPREA--SGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPT 1066 (1134)
Q Consensus       990 ~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h--~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~ 1066 (1134)
                      .+|++ +.|++|++|++.....-......+|  ..--..-..|||+.+|++|+.|...++|.+.+.+.-..      +..
T Consensus       284 t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~------~l~  357 (720)
T KOG0321|consen  284 TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA------LLL  357 (720)
T ss_pred             CeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChh------hhh
Confidence            99888 6999999999986654332222232  11122335689999999999999999999988765321      223


Q ss_pred             CCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCCC
Q 001163         1067 NPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEA 1104 (1134)
Q Consensus      1067 ~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~ 1104 (1134)
                      ||.-+|+.+  +|.|.+-.-++++++|-++++|++.+.
T Consensus       358 Ght~eVt~V--~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  358 GHTREVTTV--RWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             CcceEEEEE--eeccccCCCceeeccCcceEEEeccCc
Confidence            788888888  555655567888899999999999543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.87  E-value=2.7e-20  Score=188.81  Aligned_cols=304  Identities=19%  Similarity=0.186  Sum_probs=219.9

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la  434 (1134)
                      ...+|..+.|.+++...+|+|+.|..|+||.+..++.-..          .........+..|...|+++.|+|+|++||
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~----------~~~V~y~s~Ls~H~~aVN~vRf~p~gelLA   81 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG----------DMKVEYLSSLSRHTRAVNVVRFSPDGELLA   81 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC----------ceeEEEeecccCCcceeEEEEEcCCcCeee
Confidence            4578999999998875789999999999999976643221          001112235889999999999999999999


Q ss_pred             EEeCCCEEEEEEcc--------C-----CceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeE
Q 001163          435 VAYSKHIVHLYTYH--------G-----GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY  501 (1134)
Q Consensus       435 s~s~dg~v~iwd~~--------~-----~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~  501 (1134)
                      +|+.+|.|.+|...        +     .+.......+.+|...|..++|+|++.  ++++++.|+++++||+..|..+.
T Consensus        82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~~  159 (434)
T KOG1009|consen   82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLLA  159 (434)
T ss_pred             ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeEe
Confidence            99999999999876        3     222233446889999999999999999  89999999999999999999999


Q ss_pred             EecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec-------------------CCCC----CeeEEE
Q 001163          502 IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-------------------APGH----SSTMMA  558 (1134)
Q Consensus       502 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-------------------~~~~----~v~~~~  558 (1134)
                      .+..|...|..++|.+..  +++++-+.|...+.+.+...+......                   .|..    -...++
T Consensus       160 ~~~dh~~yvqgvawDpl~--qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRls  237 (434)
T KOG1009|consen  160 ILDDHEHYVQGVAWDPLN--QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLS  237 (434)
T ss_pred             eccccccccceeecchhh--hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcc
Confidence            999999999999997655  889998888876666554322211110                   0111    234578


Q ss_pred             ECcCCCEEEEEecC----CCC-CeEEEEEeCCC-CeeEEEecCCCCCceEEEEEcC-----------------CCCEEEE
Q 001163          559 YSADGARLFSCGTN----KEG-ESYLVEWNESE-GAVKRTYHGLGKRSVGVVQFDT-----------------TKNRFLA  615 (1134)
Q Consensus       559 ~s~~~~~l~~~~~~----~~~-~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~-----------------~~~~l~~  615 (1134)
                      |+|||..+++...-    +.- ....++++-.. .++...+.+... ....+.|+|                 -.+.+++
T Consensus       238 fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k-~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa  316 (434)
T KOG1009|consen  238 FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK-PALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA  316 (434)
T ss_pred             cCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc-ceEEEEeeeeEEEeccccccccccccccceEEE
Confidence            99999999875421    110 22334444322 233444444433 333444433                 1123333


Q ss_pred             EeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163          616 AGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       616 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      ......|++||.++-.++..... -|...++.++|+++|..++..+.||...+..++..
T Consensus       317 iAt~~svyvydtq~~~P~~~v~n-ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~  374 (434)
T KOG1009|consen  317 IATKNSVYVYDTQTLEPLAVVDN-IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW  374 (434)
T ss_pred             EeecceEEEeccccccceEEEee-eeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence            34456899999999988887754 34678999999999999999999999888777665

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.87  E-value=1.4e-20  Score=201.11  Aligned_cols=289  Identities=16%  Similarity=0.221  Sum_probs=210.8

Q ss_pred             EEEc--CCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCC
Q 001163          362 MDFH--PVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK  439 (1134)
Q Consensus       362 v~fs--p~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~d  439 (1134)
                      +.|+  |..+++||.+..||.|.++|.....-.         ++    +.+......|...|..+.|-|....|++++.|
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr---------~e----e~~lk~~~aH~nAifDl~wapge~~lVsasGD  121 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFR---------LE----ERQLKKPLAHKNAIFDLKWAPGESLLVSASGD  121 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcc---------hh----hhhhcccccccceeEeeccCCCceeEEEccCC
Confidence            4454  356679999999999999998654321         01    11112256799999999999977899999999


Q ss_pred             CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCc--------------------e
Q 001163          440 HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT--------------------K  499 (1134)
Q Consensus       440 g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~--------------------~  499 (1134)
                      .++++||+++++..... .+.||.+.|.+++|.|.+.. .+++|+.||.|.|||++-..                    .
T Consensus       122 sT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp  199 (720)
T KOG0321|consen  122 STIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP  199 (720)
T ss_pred             ceeeeeeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence            99999999998866533 47899999999999999887 79999999999999986332                    0


Q ss_pred             -------eEEecCCCcCEEE----EeccccCCccEEEEecC-CCcEEEEecCCCCceeee--------cCC---CCCeeE
Q 001163          500 -------QYIFEGHESPVYS----ICPHHKENIQFIFSTAT-DGKIKAWLYDNLGSRVDY--------DAP---GHSSTM  556 (1134)
Q Consensus       500 -------~~~~~~h~~~v~~----~~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~--------~~~---~~~v~~  556 (1134)
                             +.....+...|.+    +.|   .|...|++++. |+.|+|||++........        ..+   ...+.+
T Consensus       200 skp~~kr~~k~kA~s~ti~ssvTvv~f---kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~n  276 (720)
T KOG0321|consen  200 SKPLKKRIRKWKAASNTIFSSVTVVLF---KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVN  276 (720)
T ss_pred             CchhhccccccccccCceeeeeEEEEE---eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEE
Confidence                   0111233333433    433   23368888887 999999999865443321        112   226778


Q ss_pred             EEECcCCCEEEEEecCCCCCeEEEEEeCCCC--eeEEEecCCCCCceE-EEEEcCCCCEEEEEeCCCeEEEEEcCCCcee
Q 001163          557 MAYSADGARLFSCGTNKEGESYLVEWNESEG--AVKRTYHGLGKRSVG-VVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL  633 (1134)
Q Consensus       557 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  633 (1134)
                      +.....|.+|++.+.|+    .|++||+.+-  .++..+.++....++ .-..+|++.++++|+.|...++|.+.+.+.-
T Consensus       277 L~lDssGt~L~AsCtD~----sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~  352 (720)
T KOG0321|consen  277 LILDSSGTYLFASCTDN----SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAP  352 (720)
T ss_pred             EEecCCCCeEEEEecCC----cEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCC
Confidence            88888888888777644    4999999864  345555555432322 2357899999999999999999999876543


Q ss_pred             E-EEecCCCCCCcceEEEcCC-CcEEEEEECCCcEEEEEccCC
Q 001163          634 A-SIDADGGLQASPCIRFNKE-GILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       634 ~-~~~~~~~~~~v~~v~~sp~-~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      . .+.  +|...|.+++|.|. -.-++++++|-.++||++.++
T Consensus       353 ~~~l~--Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  353 PALLL--GHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             hhhhh--CcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            3 333  55778999999983 345667799999999999765

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=1.8e-21  Score=212.49  Aligned_cols=248  Identities=12%  Similarity=0.202  Sum_probs=196.1

Q ss_pred             CeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC-CCCEEEEE
Q 001163          358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTLFGVA  436 (1134)
Q Consensus       358 ~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~las~  436 (1134)
                      .+..|+|+.--..+||+++..|.|.+||+...-.                ..+...+..|+..|+++.|++ ...+|++|
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r----------------nk~l~~f~EH~Rs~~~ldfh~tep~iliSG  152 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR----------------NKLLTVFNEHERSANKLDFHSTEPNILISG  152 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCcccc----------------chhhhHhhhhccceeeeeeccCCccEEEec
Confidence            4556788876666899999999999999976210                011124789999999999999 67799999


Q ss_pred             eCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC-ceeEEecCCCcCEEEEec
Q 001163          437 YSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHESPVYSICP  515 (1134)
Q Consensus       437 s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~  515 (1134)
                      |.||+|++||++..+...   ++.+....|..|+|+|...+ .++++...|.+++||++.. ++...+.+|.++|.|+.|
T Consensus       153 SQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nw  228 (839)
T KOG0269|consen  153 SQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNW  228 (839)
T ss_pred             CCCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEEEee
Confidence            999999999999877544   56778889999999997655 7999999999999999865 566788999999999999


Q ss_pred             cccCCccEEEEecCCCcEEEEecCCCCceeeecCC-CCCeeEEEECcCCCE-EEEEecCCCCCeEEEEEeCCCCe-eEEE
Q 001163          516 HHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP-GHSSTMMAYSADGAR-LFSCGTNKEGESYLVEWNESEGA-VKRT  592 (1134)
Q Consensus       516 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~~~-~~~~  592 (1134)
                      +|  ++.+|+||+.|+.|+|||+...........+ ..++..+.|-|...+ |++++.-  .+..|++||++..- +..+
T Consensus       229 hP--nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv--~dtsV~VWDvrRPYIP~~t  304 (839)
T KOG0269|consen  229 HP--NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMV--VDTSVHVWDVRRPYIPYAT  304 (839)
T ss_pred             cC--CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhcc--ccceEEEEeecccccccee
Confidence            87  5589999999999999999876655554443 348999999998764 5666553  36679999998774 4456


Q ss_pred             ecCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCC
Q 001163          593 YHGLGKRSVGVVQFDT-TKNRFLAAGDEFMIKFWDMDNV  630 (1134)
Q Consensus       593 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~  630 (1134)
                      +..|.. .++.++|.. |...+.+++.||+|..-.++++
T Consensus       305 ~~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  305 FLEHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             eeccCc-cccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence            777776 888899965 3467788888888766555443

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.85  E-value=5.9e-20  Score=194.53  Aligned_cols=327  Identities=14%  Similarity=0.237  Sum_probs=238.1

Q ss_pred             eEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCc--EEEEEECCCcE
Q 001163          589 VKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI--LLAVSTNDNGI  666 (1134)
Q Consensus       589 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~--~l~~~~~dg~i  666 (1134)
                      +-..|.+|.+ .|.++...|.|.+|++|+.||+|+||.+.+|.++..+...   +.|.|++|+|.+.  .||++..+ .+
T Consensus       392 ~~lvyrGHtg-~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d---~~I~~vaw~P~~~~~vLAvA~~~-~~  466 (733)
T KOG0650|consen  392 CALVYRGHTG-LVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD---SEIRSVAWNPLSDLCVLAVAVGE-CV  466 (733)
T ss_pred             eeeeEeccCC-eEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec---ceeEEEEecCCCCceeEEEEecC-ce
Confidence            3456778887 8999999999999999999999999999999999999874   3689999999664  45555444 46


Q ss_pred             EEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccc
Q 001163          667 KILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADE  746 (1134)
Q Consensus       667 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  746 (1134)
                      .|.+..-|..+..   +.+....                ...     |                            .-..
T Consensus       467 ~ivnp~~G~~~e~---~~t~ell----------------~~~-----~----------------------------~~~~  494 (733)
T KOG0650|consen  467 LIVNPIFGDRLEV---GPTKELL----------------ASA-----P----------------------------NESE  494 (733)
T ss_pred             EEeCccccchhhh---cchhhhh----------------hcC-----C----------------------------CccC
Confidence            6655443311110   0000000                000     0                            0011


Q ss_pred             cccccceeeecccCCcc--ceeccccCCccccccEEEEEEecCCceeeeeccC---CeEEeeecCCCCCCcccccccCCC
Q 001163          747 AVEKSRIWKLTEITEPS--QCRSLRLPDNLTAMRVSRLIYTNSGLAILALASN---AVHKLWKWPRNERNSTGKATTNQA  821 (1134)
Q Consensus       747 ~d~~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~  821 (1134)
                      .+..+..|.-....+..  .+..+     .|...|..+.|+..|.+|++...+   ..+.|+++...             
T Consensus       495 p~~~~~~W~~~~~~e~~~~v~~~I-----~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~-------------  556 (733)
T KOG0650|consen  495 PDAAVVTWSRASLDELEKGVCIVI-----KHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKR-------------  556 (733)
T ss_pred             CcccceeechhhhhhhccceEEEE-----ecCCccceeeeecCCceEEEeccCCCcceEEEEecccc-------------
Confidence            12355566544322211  22222     278899999999999999988774   56667765532             


Q ss_pred             CcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEE
Q 001163          822 PQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIA  901 (1134)
Q Consensus       822 ~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la  901 (1134)
                               ..+ ..+..  ..+.|.++.|+|...+|+++....|+|||+..++.+..+......|..++++| .|..|+
T Consensus       557 ---------~sQ-~PF~k--skG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli  623 (733)
T KOG0650|consen  557 ---------KSQ-SPFRK--SKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLI  623 (733)
T ss_pred             ---------ccc-Cchhh--cCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEE
Confidence                     111 12222  46788999999999999999999999999999888888887778899999999 888999


Q ss_pred             EEeCCCcEEEEEcccc-eEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEEC--CCCc--cccceeeeecCCCCCC
Q 001163          902 IGMEDSSIQIYNVRVD-EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWST--DGWE--KQASKFLTIPNGRTAS  976 (1134)
Q Consensus       902 ~g~~dg~i~iwd~~~~-~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~--~~~~--~~~~~~~~~~~~~~~~  976 (1134)
                      .|+.|+.++.+|+.-+ +..+++..|...+++++|++.-.+++||+.||++.|+--  .+.-  ......++...+|...
T Consensus       624 ~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~  703 (733)
T KOG0650|consen  624 LGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKT  703 (733)
T ss_pred             EecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceee
Confidence            9999999999999854 677889999999999999999999999999999998842  1111  0112345556666643


Q ss_pred             -CCCceEEEEcCCCCEEEE-EeeceEEEE
Q 001163          977 -ALADTRVQFHLDQTHLLA-VHETQIAIY 1003 (1134)
Q Consensus       977 -~~~v~~l~fs~dg~~l~~-~~d~~i~iw 1003 (1134)
                       ..+|..+.|+|..-+|++ |.||+|++|
T Consensus       704 ~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  704 NDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             cccceEeecccCCCceEEecCCCceEEee
Confidence             246888899999999999 689999998

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=2.1e-20  Score=191.75  Aligned_cols=249  Identities=12%  Similarity=0.171  Sum_probs=193.1

Q ss_pred             EEEEEcC-------CCCEEEEEeCCCEEEEEEccCCceeeeeee------------------eecCCCCEEEEEEecCCC
Q 001163          422 NRVMWSP-------DGTLFGVAYSKHIVHLYTYHGGDELRNHLE------------------IEAHVGSVNDLAFSYPNK  476 (1134)
Q Consensus       422 ~~l~~sp-------d~~~las~s~dg~v~iwd~~~~~~~~~~~~------------------l~~h~~~V~~v~~s~~~~  476 (1134)
                      .|++|..       .|+|+|.|+.|..|.|||+.-...+.+...                  -.+|+..|.+++|+.+-+
T Consensus       177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~  256 (463)
T KOG0270|consen  177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR  256 (463)
T ss_pred             hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence            4566643       478999999999999999864322222111                  237999999999998877


Q ss_pred             ceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeE
Q 001163          477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTM  556 (1134)
Q Consensus       477 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~  556 (1134)
                      . .|+|||.|.+|++||+.+|++..++..|...|.++.|++... .+|++|+.|++|.+.|.+........-.-.+.|-.
T Consensus       257 n-VLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p-~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEk  334 (463)
T KOG0270|consen  257 N-VLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEP-SVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEK  334 (463)
T ss_pred             e-eEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCc-eEEEeccccceEEeeeccCccccCceEEeccceEE
Confidence            7 799999999999999999999999999999999999997654 79999999999999999853333222223457889


Q ss_pred             EEECcCCCEEEEEecCCCCCeEEEEEeCCCC-eeEEEecCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCceeE
Q 001163          557 MAYSADGARLFSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLA  634 (1134)
Q Consensus       557 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~  634 (1134)
                      ++|.|.....+.++.+   ++.++-+|++.. +++.++..|.. .|.++++++.. ..+++++.|+.|++|++.....-.
T Consensus       335 v~w~~~se~~f~~~td---dG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~  410 (463)
T KOG0270|consen  335 VAWDPHSENSFFVSTD---DGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS  410 (463)
T ss_pred             EEecCCCceeEEEecC---CceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEEEEeecCCCCcc
Confidence            9999988776666643   567999999875 89999999998 99999998876 567788899999999987654433


Q ss_pred             EEecCCCCCCcceEEEcCCC-cEEEEEECCCcEEEEEccCCce
Q 001163          635 SIDADGGLQASPCIRFNKEG-ILLAVSTNDNGIKILANADGIR  676 (1134)
Q Consensus       635 ~~~~~~~~~~v~~v~~sp~~-~~l~~~~~dg~i~iw~~~~~~~  676 (1134)
                      .....-..+...|.++.|+- ..++.|+..+.+++||+.+...
T Consensus       411 v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~  453 (463)
T KOG0270|consen  411 VKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP  453 (463)
T ss_pred             cccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence            22221113345677888855 5677888888999999987643

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=2.4e-20  Score=203.80  Aligned_cols=300  Identities=12%  Similarity=0.174  Sum_probs=225.8

Q ss_pred             eecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC-CCC
Q 001163          353 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGT  431 (1134)
Q Consensus       353 ~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~  431 (1134)
                      ++-.....+|...++-..+++.|-  ....||.+........  +.+....          -..-...+..+.|+. +.+
T Consensus        36 ~~~k~~~nAIs~nr~~~qiv~AGr--s~lklyai~~~~~~~~--~~~~~k~----------kqn~~~S~~DVkW~~~~~N  101 (839)
T KOG0269|consen   36 CKLKAKANAISVNRDINQIVVAGR--SLLKLYAINPNDFSEK--CNHRFKT----------KQNKFYSAADVKWGQLYSN  101 (839)
T ss_pred             eecccccceEeecCCcceeEEecc--cceeeEeeCcccCCcc--eeeeccc----------ccceeeehhhcccccchhh
Confidence            334556777888888776655543  2466666654332111  1110000          011123556688886 789


Q ss_pred             EEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEE
Q 001163          432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY  511 (1134)
Q Consensus       432 ~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~  511 (1134)
                      +||+++..|.|.+||+.....-+....+..|+..++++.|++-... +|+|||.||+|++||++..+-..++.+....|.
T Consensus       102 lIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiR  180 (839)
T KOG0269|consen  102 LIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIR  180 (839)
T ss_pred             hheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhhh
Confidence            9999999999999999873222223368899999999999998777 899999999999999999999999999999999


Q ss_pred             EEeccccCCccEEEEecCCCcEEEEecCCC-CceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeE
Q 001163          512 SICPHHKENIQFIFSTATDGKIKAWLYDNL-GSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK  590 (1134)
Q Consensus       512 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~  590 (1134)
                      .+.|++.. +..++++.+.|.+++||++.. .....+..|.++|.++.|+|++.+||+||.|+    +|++||+.+++..
T Consensus       181 DV~fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK----~vkiWd~t~~~~~  255 (839)
T KOG0269|consen  181 DVKFSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDK----MVKIWDMTDSRAK  255 (839)
T ss_pred             ceeeccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCc----cEEEEeccCCCcc
Confidence            99999866 589999999999999999864 45667889999999999999999999998654    6999999887665


Q ss_pred             EEecCCCCCceEEEEEcCCCCE-EEEEe--CCCeEEEEEcCCCc-eeEEEecCCCCCCcceEEEcC-CCcEEEEEECCCc
Q 001163          591 RTYHGLGKRSVGVVQFDTTKNR-FLAAG--DEFMIKFWDMDNVN-LLASIDADGGLQASPCIRFNK-EGILLAVSTNDNG  665 (1134)
Q Consensus       591 ~~~~~~~~~~v~~~~~~~~~~~-l~~~~--~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~v~~sp-~~~~l~~~~~dg~  665 (1134)
                      ....-+...++..+.|-|...+ |++++  .|-.|+|||++..- +..++..|  ...++.++|.. |...+.+++.||+
T Consensus       256 ~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH--~~~vt~i~W~~~d~~~l~s~sKD~t  333 (839)
T KOG0269|consen  256 PKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH--TDSVTGIAWDSGDRINLWSCSKDGT  333 (839)
T ss_pred             ceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeecc--CccccceeccCCCceeeEeecCccH
Confidence            5555555568999999998755 55554  68899999997543 44555544  67889999976 5678889999998


Q ss_pred             EEEEEccCC
Q 001163          666 IKILANADG  674 (1134)
Q Consensus       666 i~iw~~~~~  674 (1134)
                      +..-.+.+.
T Consensus       334 v~qh~~kna  342 (839)
T KOG0269|consen  334 VLQHLFKNA  342 (839)
T ss_pred             HHHhhhhcc
Confidence            866554443

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=4.2e-19  Score=173.48  Aligned_cols=255  Identities=11%  Similarity=0.167  Sum_probs=191.4

Q ss_pred             cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCc-eeeeeeeeecCCCCEEEEEEecC--CCceEEEEEeCCCeEE
Q 001163          414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGD-ELRNHLEIEAHVGSVNDLAFSYP--NKQLSVVTCGEDRVIK  490 (1134)
Q Consensus       414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~-~~~~~~~l~~h~~~V~~v~~s~~--~~~~~l~s~s~d~~i~  490 (1134)
                      -.+|.+-|.|+.|.+-|+.+|+|+.|++|+|||.+... ........+.|.+.|..+.|.+.  |+  .+++++.|+++.
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~   86 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS   86 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence            46899999999999999999999999999999965432 24445568899999999999764  55  899999999999


Q ss_pred             EEECCC---------CceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCcee------eec-------
Q 001163          491 VWDAVT---------GTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV------DYD-------  548 (1134)
Q Consensus       491 iwd~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~------~~~-------  548 (1134)
                      ||.-..         -....++......|+.++|.|..-|-.+++++.||.+|||+........      ++.       
T Consensus        87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~  166 (361)
T KOG2445|consen   87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG  166 (361)
T ss_pred             eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence            997421         1233466778889999999999989999999999999999765432221      111       


Q ss_pred             CCCCCeeEEEECcC---CCEEEEEecCC-CCCeEEEEEeCCCC----eeEEEecCCCCCceEEEEEcCCC----CEEEEE
Q 001163          549 APGHSSTMMAYSAD---GARLFSCGTNK-EGESYLVEWNESEG----AVKRTYHGLGKRSVGVVQFDTTK----NRFLAA  616 (1134)
Q Consensus       549 ~~~~~v~~~~~s~~---~~~l~~~~~~~-~~~~~i~~wd~~~~----~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~  616 (1134)
                      .+.....++.|+|.   ..+|+.++.+. .....++||....+    ..+.++.++.. +|+.++|.|.-    ..|+++
T Consensus       167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wAPn~Gr~y~~lAvA  245 (361)
T KOG2445|consen  167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWAPNIGRSYHLLAVA  245 (361)
T ss_pred             cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeeccccCCceeeEEEe
Confidence            12336778899874   34677776541 11224666654432    34556777776 99999999974    568889


Q ss_pred             eCCCeEEEEEcCCCc-----------------eeEEEe-cCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEcc
Q 001163          617 GDEFMIKFWDMDNVN-----------------LLASID-ADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA  672 (1134)
Q Consensus       617 ~~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~  672 (1134)
                      +.|| |+||++....                 .+..+. ..+|...|..+.|+-.|..|++.++||.||+|...
T Consensus       246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            9999 9999986311                 122222 33567799999999999999999999999999753

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=2.6e-21  Score=209.37  Aligned_cols=233  Identities=13%  Similarity=0.224  Sum_probs=206.6

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la  434 (1134)
                      |...|.|+..-..++ .+++|+.|..+-+|.+..-..+.                   .+.+|+.+|.|+.|+++..+|+
T Consensus        27 hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~-------------------S~~~hespIeSl~f~~~E~Lla   86 (825)
T KOG0267|consen   27 HSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAIT-------------------SLTGHESPIESLTFDTSERLLA   86 (825)
T ss_pred             hhhhhceeeeeccce-eeccCCCceeeccccccCCchhh-------------------eeeccCCcceeeecCcchhhhc
Confidence            778888888855665 67899999999999986543332                   2689999999999999999999


Q ss_pred             EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEe
Q 001163          435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSIC  514 (1134)
Q Consensus       435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~  514 (1134)
                      +|+.+|+|++||++.++.++   +|.||...+.++.|+|-+.  +.++|+.|+.+++||++...|.+.+.+|...|..+.
T Consensus        87 agsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~  161 (825)
T KOG0267|consen   87 AGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR  161 (825)
T ss_pred             ccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence            99999999999999988777   7999999999999999999  789999999999999999999999999999999999


Q ss_pred             ccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEec
Q 001163          515 PHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH  594 (1134)
Q Consensus       515 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~  594 (1134)
                      |.  ++|.+++++++|.++++||+..++....+..|...+.++.|+|..-.++.|+.++    .+++||+++.+.+....
T Consensus       162 ls--P~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~----tv~f~dletfe~I~s~~  235 (825)
T KOG0267|consen  162 LS--PDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDR----TVRFWDLETFEVISSGK  235 (825)
T ss_pred             ec--CCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCc----eeeeeccceeEEeeccC
Confidence            85  5569999999999999999999999889999999999999999998888887644    69999999999888877


Q ss_pred             CCCCCceEEEEEcCCCCEEEEEeCC
Q 001163          595 GLGKRSVGVVQFDTTKNRFLAAGDE  619 (1134)
Q Consensus       595 ~~~~~~v~~~~~~~~~~~l~~~~~d  619 (1134)
                      .... .|.+..|+|++..+++|...
T Consensus       236 ~~~~-~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  236 PETD-GVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             CccC-CceeeeecCCceeeecCchh
Confidence            7755 89999999999988888654

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=9.2e-21  Score=216.99  Aligned_cols=251  Identities=14%  Similarity=0.227  Sum_probs=206.4

Q ss_pred             CCCEEEEEEcCCCCE----EEEEeCCCEEEEEEccC---CceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEE
Q 001163          418 TASVNRVMWSPDGTL----FGVAYSKHIVHLYTYHG---GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIK  490 (1134)
Q Consensus       418 ~~~V~~l~~spd~~~----las~s~dg~v~iwd~~~---~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~  490 (1134)
                      ...-+.++|.+.|..    ||.|..||.|.+||...   +.......+...|.+.|..+.|++...+ +|++|+.||.|.
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~  142 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEIL  142 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEE
Confidence            457789999997765    89999999999999875   3333344467789999999999998877 799999999999


Q ss_pred             EEECCCCceeEEec--CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCC--CeeEEEECcCCCE-
Q 001163          491 VWDAVTGTKQYIFE--GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH--SSTMMAYSADGAR-  565 (1134)
Q Consensus       491 iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~-  565 (1134)
                      |||+..-+.-.++.  ...+.|.+++|+..- ...|++++.+|.+.|||++..+.+..+..+..  .+..++|+|++.. 
T Consensus       143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkv-qhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTq  221 (1049)
T KOG0307|consen  143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRKV-SHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQ  221 (1049)
T ss_pred             EeccCCcCCCCCCCCCCCcccceEeccchhh-hHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCcee
Confidence            99998866555542  246789999997543 47899999999999999998877777766554  5789999998864 


Q ss_pred             EEEEecCCCCCeEEEEEeCCCC-eeEEEecCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCceeEEEecCCCCC
Q 001163          566 LFSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQ  643 (1134)
Q Consensus       566 l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  643 (1134)
                      +++++ +.+....|.+||++.. .+++++.+|.. .|.++.|++.+ .++++++.|+.|.+|+.++++.+..+...  ..
T Consensus       222 l~~As-~dd~~PviqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~--~n  297 (1049)
T KOG0307|consen  222 LLVAS-GDDSAPVIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ--GN  297 (1049)
T ss_pred             eeeec-CCCCCceeEeecccccCCchhhhccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC--Cc
Confidence            44444 4467888999998864 56777888877 89999999987 78889999999999999999999998864  45


Q ss_pred             CcceEEEcCCC-cEEEEEECCCcEEEEEccCC
Q 001163          644 ASPCIRFNKEG-ILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       644 ~v~~v~~sp~~-~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      .+..+.|+|.. ..+++++-||.|.|+.+...
T Consensus       298 W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  298 WCFDVQWCPRNPSVMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             ceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence            88999999955 58899999999999998765

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.83  E-value=1.2e-16  Score=187.47  Aligned_cols=373  Identities=22%  Similarity=0.382  Sum_probs=285.1

Q ss_pred             eecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCc-eeEEecCCCc-CEEEEeccccCCcc-EEEEecC-CCcEE
Q 001163          459 IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-KQYIFEGHES-PVYSICPHHKENIQ-FIFSTAT-DGKIK  534 (1134)
Q Consensus       459 l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~h~~-~v~~~~~~~~~~~~-~l~s~s~-dg~i~  534 (1134)
                      +..|...+..+.|.+.+.  .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+. ..++. .++..+. |+.+.
T Consensus        61 ~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~  137 (466)
T COG2319          61 LRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTVK  137 (466)
T ss_pred             eeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccEE
Confidence            567999999999999998  78888899999999998887 7777776443 77777774 55555 5555444 99999


Q ss_pred             EEecCC-CCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCC-E
Q 001163          535 AWLYDN-LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN-R  612 (1134)
Q Consensus       535 vwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~  612 (1134)
                      +|+... ......+..+...+..++|+|+++.++.++.   .+..+.+|+...+..+..+.+|.. .+.++.|+|++. .
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  213 (466)
T COG2319         138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS---LDGTIKLWDLRTGKPLSTLAGHTD-PVSSLAFSPDGGLL  213 (466)
T ss_pred             EEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC---CCCceEEEEcCCCceEEeeccCCC-ceEEEEEcCCcceE
Confidence            999987 6677778888889999999999998877753   255699999999888888888766 899999999998 4


Q ss_pred             EEEEeCCCeEEEEEcCCCceeE-EEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCccccccc
Q 001163          613 FLAAGDEFMIKFWDMDNVNLLA-SIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRV  691 (1134)
Q Consensus       613 l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~  691 (1134)
                      +++++.|+.|++||...+..+. .+..+  .... ...|+|++..+++++.|+.+++|+..........+          
T Consensus       214 ~~~~~~d~~i~~wd~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----------  280 (466)
T COG2319         214 IASGSSDGTIRLWDLSTGKLLRSTLSGH--SDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL----------  280 (466)
T ss_pred             EEEecCCCcEEEEECCCCcEEeeecCCC--Ccce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE----------
Confidence            5555899999999988777777 46554  3332 22899999899999999999999987652201100          


Q ss_pred             chhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccC
Q 001163          692 ASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLP  771 (1134)
Q Consensus       692 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~  771 (1134)
                                                                                                      
T Consensus       281 --------------------------------------------------------------------------------  280 (466)
T COG2319         281 --------------------------------------------------------------------------------  280 (466)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEE
Q 001163          772 DNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFAL  851 (1134)
Q Consensus       772 ~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~  851 (1134)
                       .+|...+.++.|.|++..+++++.|+.+.+|+......                      ..... ...|...+..+.+
T Consensus       281 -~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----------------------~~~~~-~~~~~~~~~~~~~  336 (466)
T COG2319         281 -SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL----------------------LSSLT-LKGHEGPVSSLSF  336 (466)
T ss_pred             -ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce----------------------EEEee-ecccCCceEEEEE
Confidence             02567888999999988888888888899996553211                      00000 0126667888888


Q ss_pred             cCCCCeEEEe-e-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEE-EeCCCcEEEEEcccceEEEeccCccC
Q 001163          852 SKNDSYVMSA-S-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAI-GMEDSSIQIYNVRVDEVKTKLKGHQK  928 (1134)
Q Consensus       852 s~dg~~la~~-s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~-g~~dg~i~iwd~~~~~~~~~l~~h~~  928 (1134)
                      .+++..++.+ . |+.+.+|+............. ..+..+.+.+ + ..++. +..++.+.+|+............+..
T Consensus       337 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (466)
T COG2319         337 SPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTS  413 (466)
T ss_pred             CCCCCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCCC
Confidence            4343555555 4 788999999887733333322 2288999998 7 55555 88999999999998887777665547


Q ss_pred             ceEEEEEeeCCCEEEEEeCCCcEEEEECCC
Q 001163          929 RITGLAFSNTLNVLVSSGADSQLCVWSTDG  958 (1134)
Q Consensus       929 ~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~  958 (1134)
                      .+....+++++..+++++.++.+++|+...
T Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         414 RVTSLDFSPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             cEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence            799999999999999999999999999887

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=3.6e-18  Score=167.04  Aligned_cols=254  Identities=13%  Similarity=0.221  Sum_probs=189.5

Q ss_pred             ecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC--CCC
Q 001163          354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGT  431 (1134)
Q Consensus       354 ~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~~  431 (1134)
                      +|.+-|.++.|.+-|+++ |+++.|++|.|||.....-.-       ..        ...-+.|.+.|..+.|-+  -|+
T Consensus        11 ~h~DlihdVs~D~~GRRm-AtCSsDq~vkI~d~~~~s~~W-------~~--------Ts~Wrah~~Si~rV~WAhPEfGq   74 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYGRRM-ATCSSDQTVKIWDSTSDSGTW-------SC--------TSSWRAHDGSIWRVVWAHPEFGQ   74 (361)
T ss_pred             CCcceeeeeeecccCcee-eeccCCCcEEEEeccCCCCce-------EE--------eeeEEecCCcEEEEEecCccccc
Confidence            378899999999999975 899999999999975443211       10        112457999999999976  699


Q ss_pred             EEEEEeCCCEEEEEEccC------CceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCcee-----
Q 001163          432 LFGVAYSKHIVHLYTYHG------GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ-----  500 (1134)
Q Consensus       432 ~las~s~dg~v~iwd~~~------~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~-----  500 (1134)
                      .+|+++.|+++.||.-..      +..-....++......|+.+.|.|....+.+++++.||.+|||+....-.+     
T Consensus        75 vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L  154 (361)
T KOG2445|consen   75 VVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL  154 (361)
T ss_pred             eEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchh
Confidence            999999999999997521      112223446777888999999999887779999999999999987654322     


Q ss_pred             -EEec-------CCCcCEEEEeccccCCc-cEEEEecCC-----CcEEEEecCCCCce----eeecCCCCCeeEEEECcC
Q 001163          501 -YIFE-------GHESPVYSICPHHKENI-QFIFSTATD-----GKIKAWLYDNLGSR----VDYDAPGHSSTMMAYSAD  562 (1134)
Q Consensus       501 -~~~~-------~h~~~v~~~~~~~~~~~-~~l~s~s~d-----g~i~vwd~~~~~~~----~~~~~~~~~v~~~~~s~~  562 (1134)
                       ..+.       .+..+..|+.|+++.-. .+|+.|+.+     +.++||.......+    ..+..+..+|++++|.|+
T Consensus       155 q~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn  234 (361)
T KOG2445|consen  155 QHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN  234 (361)
T ss_pred             hhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence             2232       46667788888755332 466777665     47899987665532    245677889999999996


Q ss_pred             C----CEEEEEecCCCCCeEEEEEeCCCC--------------------eeEEEecCCCCCceEEEEEcCCCCEEEEEeC
Q 001163          563 G----ARLFSCGTNKEGESYLVEWNESEG--------------------AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGD  618 (1134)
Q Consensus       563 ~----~~l~~~~~~~~~~~~i~~wd~~~~--------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  618 (1134)
                      -    ..|++++.|+     |+||.+...                    +.+..+..|+. .|..+.|+-.|..|.+.|.
T Consensus       235 ~Gr~y~~lAvA~kDg-----v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-~VWrv~wNmtGtiLsStGd  308 (361)
T KOG2445|consen  235 IGRSYHLLAVATKDG-----VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG-EVWRVRWNMTGTILSSTGD  308 (361)
T ss_pred             cCCceeeEEEeecCc-----EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-ceEEEEEeeeeeEEeecCC
Confidence            3    3577776543     999988731                    23344566665 8999999999999999999


Q ss_pred             CCeEEEEEcCC
Q 001163          619 EFMIKFWDMDN  629 (1134)
Q Consensus       619 dg~i~iwd~~~  629 (1134)
                      ||.|++|...-
T Consensus       309 DG~VRLWkany  319 (361)
T KOG2445|consen  309 DGCVRLWKANY  319 (361)
T ss_pred             Cceeeehhhhh
Confidence            99999997653

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.83  E-value=2.8e-19  Score=176.30  Aligned_cols=259  Identities=17%  Similarity=0.247  Sum_probs=193.4

Q ss_pred             cCCCeeEEEEcCC---CCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCC-C
Q 001163          355 QGSAVKSMDFHPV---QQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD-G  430 (1134)
Q Consensus       355 h~~~V~~v~fsp~---g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-~  430 (1134)
                      |......++|+-|   |.-++|.|+.-|.|+|.|+.+++....                   +.+|...|+.+.|.|+ .
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~-------------------~~ghG~sINeik~~p~~~  148 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKN-------------------YRGHGGSINEIKFHPDRP  148 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccc-------------------eeccCccchhhhcCCCCC
Confidence            6778889999865   455788888999999999999876653                   7899999999999995 5


Q ss_pred             CEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeE---------
Q 001163          431 TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY---------  501 (1134)
Q Consensus       431 ~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~---------  501 (1134)
                      ++|+++|.|.+|++|++++..++..+.-+.||.+.|.++.|+++|.  +|+|++.|.++++|++...+...         
T Consensus       149 qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd--~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~  226 (385)
T KOG1034|consen  149 QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGD--RIASCGMDHSLKLWRLNVKEFKNKLELSITYS  226 (385)
T ss_pred             cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCC--eeeccCCcceEEEEecChhHHhhhhhhhcccC
Confidence            7999999999999999999999987777889999999999999999  89999999999999987432110         


Q ss_pred             -------------------EecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcC
Q 001163          502 -------------------IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSAD  562 (1134)
Q Consensus       502 -------------------~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~  562 (1134)
                                         +-.-|...|.|+.|..    +++++-|-++.|..|.....+....      .|   . -|.
T Consensus       227 ~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g----d~ilSkscenaI~~w~pgkl~e~~~------~v---k-p~e  292 (385)
T KOG1034|consen  227 PNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG----DFILSKSCENAIVCWKPGKLEESIH------NV---K-PPE  292 (385)
T ss_pred             CCCccCcCCccccccccccccccccchHHHHHHHh----hheeecccCceEEEEecchhhhhhh------cc---C-CCc
Confidence                               1123666677766632    5788888888888885521111100      00   0 011


Q ss_pred             CCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceE--EEEEcCCCCEEEEEeCCCeEEEEEcCCCcee--EEEec
Q 001163          563 GARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVG--VVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL--ASIDA  638 (1134)
Q Consensus       563 ~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~  638 (1134)
                      +..-           .+.-++....            .+.  ..+|.|-++.|+.|...|.|++||++..++.  .++..
T Consensus       293 s~~T-----------i~~~~~~~~c------------~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~  349 (385)
T KOG1034|consen  293 SATT-----------ILGEFDYPMC------------DIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTH  349 (385)
T ss_pred             ccee-----------eeeEeccCcc------------ceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEe
Confidence            1000           1222222221            222  3456777899999999999999999987763  34444


Q ss_pred             CCCCCCcceEEEcCCCcEEEEEECCCcEEEEEc
Q 001163          639 DGGLQASPCIRFNKEGILLAVSTNDNGIKILAN  671 (1134)
Q Consensus       639 ~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~  671 (1134)
                      +.....|...+|+.||..|+...+|++|.-||.
T Consensus       350 s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  350 SKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             ccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence            455668999999999999999999999999984

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.82  E-value=2.1e-18  Score=169.66  Aligned_cols=409  Identities=11%  Similarity=0.111  Sum_probs=258.5

Q ss_pred             EEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEE
Q 001163          423 RVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI  502 (1134)
Q Consensus       423 ~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~  502 (1134)
                      -++|||+|+|+|+++.- .+.|-|..+-+....    ----+.|..+.|..|.-. .|.....|+.|.+|++...+--..
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~ql----f~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck   86 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQL----FLCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK   86 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHH----HHHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence            47899999999999776 688888887654331    112456888999988874 466677899999999999998888


Q ss_pred             ecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEE
Q 001163          503 FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEW  582 (1134)
Q Consensus       503 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w  582 (1134)
                      +....+++.+++|+|++. .+|.+..-|-.|.+|.+.+..... +......+..++|+|||++.+.++.- |-...+.+.
T Consensus        87 Ideg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRr-DCkdyv~i~  163 (447)
T KOG4497|consen   87 IDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRR-DCKDYVQIS  163 (447)
T ss_pred             eccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecc-cHHHHHHHH
Confidence            988899999999976543 567778889999999998755443 33344567899999999999888642 222233333


Q ss_pred             eCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEEC
Q 001163          583 NESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTN  662 (1134)
Q Consensus       583 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~  662 (1134)
                      .-.....++.+..... ..+.+.|+|||+.+++         ||.--.-.+.....   .-.+..++|+|.+++|++|+.
T Consensus       164 ~c~~W~ll~~f~~dT~-DltgieWsPdg~~laV---------wd~~Leykv~aYe~---~lG~k~v~wsP~~qflavGsy  230 (447)
T KOG4497|consen  164 SCKAWILLKEFKLDTI-DLTGIEWSPDGNWLAV---------WDNVLEYKVYAYER---GLGLKFVEWSPCNQFLAVGSY  230 (447)
T ss_pred             hhHHHHHHHhcCCCcc-cccCceECCCCcEEEE---------ecchhhheeeeeee---ccceeEEEeccccceEEeecc
Confidence            3333445556665554 5678999999987765         44222112222211   225678999999999999999


Q ss_pred             CCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccc
Q 001163          663 DNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPK  742 (1134)
Q Consensus       663 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  742 (1134)
                      |+.+|+.+--+- ..+..+.. ...                                                       
T Consensus       231 D~~lrvlnh~tW-k~f~eflh-l~s-------------------------------------------------------  253 (447)
T KOG4497|consen  231 DQMLRVLNHFTW-KPFGEFLH-LCS-------------------------------------------------------  253 (447)
T ss_pred             chhhhhhceeee-eehhhhcc-chh-------------------------------------------------------
Confidence            999999764332 11111100 000                                                       


Q ss_pred             cccccccc-cceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCC
Q 001163          743 IADEAVEK-SRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQA  821 (1134)
Q Consensus       743 ~~~~~d~~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~  821 (1134)
                         ..|-+ ..++.-.       ...       -.-...++.|.|..-         ...+|......+....-.     
T Consensus       254 ---~~dp~~~~~~ke~-------~~~-------~ql~~~cLsf~p~~~---------~a~~~~~se~~YE~~~~p-----  302 (447)
T KOG4497|consen  254 ---YHDPTLHLLEKET-------FSI-------VQLLHHCLSFTPTDL---------EAHIWEESETIYEQQMTP-----  302 (447)
T ss_pred             ---ccCchhhhhhhhh-------cch-------hhhcccccccCCCcc---------ccCccccchhhhhhhhcc-----
Confidence               00000 0000000       000       001112344444321         111111110000000000     


Q ss_pred             CcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeC---CeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCc
Q 001163          822 PQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASG---GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN  898 (1134)
Q Consensus       822 ~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sd---g~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~  898 (1134)
                      +.   +..-+.. .+.+.  ..-.+.-++||+|..++++-.|   +.+.+||+...+....+. ...+|.+..|.| +..
T Consensus       303 v~---~~~lkp~-tD~pn--Pk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~p  374 (447)
T KOG4497|consen  303 VK---VHKLKPP-TDFPN--PKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GRP  374 (447)
T ss_pred             ee---eecccCC-CCCCC--cccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CCc
Confidence            00   0000000 11111  3456778999999999999986   569999998877655554 567899999999 777


Q ss_pred             EEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCc
Q 001163          899 IIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQ  950 (1134)
Q Consensus       899 ~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~  950 (1134)
                      .|+.......+++|.......+.. .+..-.|..+.|..+|..++.++.|.-
T Consensus       375 rL~vctg~srLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  375 RLVVCTGKSRLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             eEEEEcCCceEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCce
Confidence            888887777899999876555543 333467999999999999999998873

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.82  E-value=1.1e-18  Score=180.67  Aligned_cols=274  Identities=11%  Similarity=0.142  Sum_probs=204.6

Q ss_pred             CcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCC-EEEEEeCCCEEEEEEccCC--ceeee
Q 001163          379 GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT-LFGVAYSKHIVHLYTYHGG--DELRN  455 (1134)
Q Consensus       379 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~-~las~s~dg~v~iwd~~~~--~~~~~  455 (1134)
                      .+++|||+...+....              +.   .....-.|.++.|+.... .+|+.+.|..+++|.-...  +.. .
T Consensus        12 d~~kl~D~s~~~~~~~--------------~~---~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp-~   73 (673)
T KOG4378|consen   12 DKTKLSDFSDLETKSE--------------YV---HQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVP-R   73 (673)
T ss_pred             CceEEeecccccCccc--------------cc---cCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccc-e
Confidence            3599999976553321              00   011222499999998764 2344467888999965432  111 1


Q ss_pred             eeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEE
Q 001163          456 HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKA  535 (1134)
Q Consensus       456 ~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~v  535 (1134)
                      ...+.+.  .-.|++......  ++++|+..++|+|||++...+.+.+++|+..|+++.++...  .+|++++..|.|.+
T Consensus        74 ~~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~D--eyiAsvs~gGdiii  147 (673)
T KOG4378|consen   74 VRKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTD--EYIASVSDGGDIII  147 (673)
T ss_pred             eeccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCc--ceeEEeccCCcEEE
Confidence            1122222  233444333334  89999999999999999888888999999999999986544  89999999999999


Q ss_pred             EecCCCCceeeecCCCC-CeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCC-CEE
Q 001163          536 WLYDNLGSRVDYDAPGH-SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK-NRF  613 (1134)
Q Consensus       536 wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l  613 (1134)
                      ..+.+......+....+ .|.-+.|+|..+.+++...+   ++.|.+||.....++..+...+..+...+||+|.+ ..|
T Consensus       148 h~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd---~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~  224 (673)
T KOG4378|consen  148 HGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD---KGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALL  224 (673)
T ss_pred             EecccCccccceecCCCCeEEEeecccccceeeEeecc---CCeEEEEeccCCCcccchhhhccCCcCcceecCCccceE
Confidence            99988777777766544 56689999998887766543   45799999998888887766666688999999987 567


Q ss_pred             EEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEec
Q 001163          614 LAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVE  682 (1134)
Q Consensus       614 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  682 (1134)
                      ++.|.|..|++||....+....+..   ..+...++|+++|.+|+.|...|.|..||+......+..+.
T Consensus       225 vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~s  290 (673)
T KOG4378|consen  225 VSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRS  290 (673)
T ss_pred             EEecccceEEEeecccccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEee
Confidence            7889999999999998877777754   34678999999999999999999999999977654444443

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.82  E-value=1e-18  Score=175.37  Aligned_cols=267  Identities=16%  Similarity=0.257  Sum_probs=188.9

Q ss_pred             CceeEEEeecCCCeeEEEEcCCC-CeEEEEEeCCCcEEEEecCCccce-eeeceeeeeccccCccccccccccCCCCEEE
Q 001163          346 PKTVVMTLNQGSAVKSMDFHPVQ-QILLVVGTNMGDVMLWEVGSRERI-AVKSFKVWELGACSMPLQASLSSDYTASVNR  423 (1134)
Q Consensus       346 ~~~~~~~~~h~~~V~~v~fsp~g-~~lla~gs~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  423 (1134)
                      |......+.|.+.|+.+.-++-| ..++|+-+..|.|.|||+...-.. ......+-+    ....+...+.+|.+.=+.
T Consensus       141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy~  216 (440)
T KOG0302|consen  141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGYG  216 (440)
T ss_pred             ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCcccee
Confidence            34445566788889999888875 446777788899999998643211 000000000    111112236899999999


Q ss_pred             EEEcC-CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC---ce
Q 001163          424 VMWSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG---TK  499 (1134)
Q Consensus       424 l~~sp-d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~---~~  499 (1134)
                      ++||| .-..|++|..-+.|++|...+|.-..-...+.+|+..|-.++|||..+. .|+|||.|++|+|||++.+   .+
T Consensus       217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~  295 (440)
T KOG0302|consen  217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAA  295 (440)
T ss_pred             eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccce
Confidence            99999 3345888888888999999987654444467889999999999998776 8999999999999999988   34


Q ss_pred             eEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCC---CceeeecCCCCCeeEEEECcCCCE-EEEEecCCCC
Q 001163          500 QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL---GSRVDYDAPGHSSTMMAYSADGAR-LFSCGTNKEG  575 (1134)
Q Consensus       500 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~~~~~  575 (1134)
                      +.+ +.|.+.|+.|.|+...  .+|++|+.||+++|||++..   ..+..+..|..+|+++.|+|.... +++++.    
T Consensus       296 ~~~-kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~----  368 (440)
T KOG0302|consen  296 VST-KAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE----  368 (440)
T ss_pred             eEe-eccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC----
Confidence            444 7899999999996554  59999999999999999864   445678889999999999996654 444433    


Q ss_pred             CeEEEEEeCCCCee----------------EEEecCC-CCCceEEEEEcCCC-CEEEEEeCCCeEEEE
Q 001163          576 ESYLVEWNESEGAV----------------KRTYHGL-GKRSVGVVQFDTTK-NRFLAAGDEFMIKFW  625 (1134)
Q Consensus       576 ~~~i~~wd~~~~~~----------------~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw  625 (1134)
                      +.+|.+||+..-.-                .+.+-.| .+..+..+.|+++- .++++.+.|| +.||
T Consensus       369 D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  369 DNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF  435 (440)
T ss_pred             CCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence            45699999863211                0011111 12245667788765 4666666776 3344

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.82  E-value=6.6e-19  Score=182.25  Aligned_cols=293  Identities=11%  Similarity=0.186  Sum_probs=213.2

Q ss_pred             ccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCc-eeeeeccCCeEEeeecCCCCCCcccccccCCCC
Q 001163          744 ADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGL-AILALASNAVHKLWKWPRNERNSTGKATTNQAP  822 (1134)
Q Consensus       744 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~  822 (1134)
                      ..+....+++||+.............     ....+.++.|+.... .+++.+.|..+++|.-...              
T Consensus         7 ~aS~gd~~kl~D~s~~~~~~~~~~~t-----~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~--------------   67 (673)
T KOG4378|consen    7 VASTGDKTKLSDFSDLETKSEYVHQT-----AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK--------------   67 (673)
T ss_pred             eeccCCceEEeecccccCccccccCC-----CCCcceeeeccccceEEEeecCCceeEEEecccCC--------------
Confidence            34444689999998765544433322     122388888887764 2334455889999854321              


Q ss_pred             cccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEE
Q 001163          823 QLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIA  901 (1134)
Q Consensus       823 ~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la  901 (1134)
                            ++++......   ....-.|++......|+++|+ .+.|+|||+....+.+.+++|...|+++.+.- .+.+||
T Consensus        68 ------~~~Vp~~~k~---~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiA  137 (673)
T KOG4378|consen   68 ------TPEVPRVRKL---TGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIA  137 (673)
T ss_pred             ------CCccceeecc---ccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-CcceeE
Confidence                  1111111111   112334555555568888888 89999999998888888999999999999998 788999


Q ss_pred             EEeCCCcEEEEEcccceEEEeccCccC-ceEEEEEeeCCCE-EEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCC
Q 001163          902 IGMEDSSIQIYNVRVDEVKTKLKGHQK-RITGLAFSNTLNV-LVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALA  979 (1134)
Q Consensus       902 ~g~~dg~i~iwd~~~~~~~~~l~~h~~-~V~~l~~s~d~~~-l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  979 (1134)
                      +++..|.|.|..+.++.....|....+ .|.-+.||+..++ |.+++.+|.|.+||+....    ......+.|.   .+
T Consensus       138 svs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s----p~~~~~~~Hs---AP  210 (673)
T KOG4378|consen  138 SVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS----PIFHASEAHS---AP  210 (673)
T ss_pred             EeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC----cccchhhhcc---CC
Confidence            999999999999999987777775534 4558899987765 5678999999999998743    2333334444   57


Q ss_pred             ceEEEEcCCCCEEEE--EeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceee
Q 001163          980 DTRVQFHLDQTHLLA--VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCR 1057 (1134)
Q Consensus       980 v~~l~fs~dg~~l~~--~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~ 1057 (1134)
                      ...++|+|....|++  |.|..|.+||+........+..   ..+.+.++|+++|.+|+.|+..|.|..||+...+.-. 
T Consensus       211 ~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv-  286 (673)
T KOG4378|consen  211 CRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPV-  286 (673)
T ss_pred             cCcceecCCccceEEEecccceEEEeecccccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCCCCc-
Confidence            888999998877766  7999999999997777766653   6789999999999999999999999999997654321 


Q ss_pred             cCCCcccCCCCCCCceeEEEEecC
Q 001163         1058 INPTAYLPTNPSLRVYPLVIAGNP 1081 (1134)
Q Consensus      1058 ~~~~~~~~~~h~~~v~~~~~~~~p 1081 (1134)
                           -..+.|...|+.+++..+|
T Consensus       287 -----~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  287 -----AVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             -----eEeeecccceeEEEeeecc
Confidence                 1223578889888555443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.82  E-value=9.4e-16  Score=179.94  Aligned_cols=372  Identities=23%  Similarity=0.395  Sum_probs=278.2

Q ss_pred             cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCc-eeeeeeeeecCC-CCEEEEEE-ecCCCceEEEEEeCCCeEE
Q 001163          414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGD-ELRNHLEIEAHV-GSVNDLAF-SYPNKQLSVVTCGEDRVIK  490 (1134)
Q Consensus       414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~-~~~~~~~l~~h~-~~V~~v~~-s~~~~~~~l~s~s~d~~i~  490 (1134)
                      ...|...|.++.|.+.+..++.++.|+.+.+|+...+. .+.   .+.++. ..+..+.+ ++++....+..+..|+.+.
T Consensus        61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  137 (466)
T COG2319          61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK---SLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK  137 (466)
T ss_pred             eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEE---EEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence            46799999999999999999999999999999999876 333   355533 37777777 7777632333345599999


Q ss_pred             EEECCC-CceeEEecCCCcCEEEEeccccCCccEEEEecC-CCcEEEEecCCCCceeeecCCCCCeeEEEECcCCC-EEE
Q 001163          491 VWDAVT-GTKQYIFEGHESPVYSICPHHKENIQFIFSTAT-DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGA-RLF  567 (1134)
Q Consensus       491 iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~  567 (1134)
                      +||... ......+..|...|..++|++..  ..+++++. |+.+++|+.........+..+...+.+++|+|++. .++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  215 (466)
T COG2319         138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDG--KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA  215 (466)
T ss_pred             EEEecCCCeEEEEEecCcccEEEEEECCCC--CEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEE
Confidence            999988 78888999999999999987655  57888875 99999999998777777777888999999999998 444


Q ss_pred             EEecCCCCCeEEEEEeCCCCeeEE-EecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce-eEEEecCCCCCCc
Q 001163          568 SCGTNKEGESYLVEWNESEGAVKR-TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL-LASIDADGGLQAS  645 (1134)
Q Consensus       568 ~~~~~~~~~~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v  645 (1134)
                      +++.    +..+.+||...+.... .+.+|.. .. ...|++++..+++++.|+.+++|+...... +..+  .++...+
T Consensus       216 ~~~~----d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~v  287 (466)
T COG2319         216 SGSS----DGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--SGHSSSV  287 (466)
T ss_pred             EecC----CCcEEEEECCCCcEEeeecCCCCc-ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--ecCCccE
Confidence            4343    3458899998888887 6777776 33 338999998999999999999999987665 4444  3446789


Q ss_pred             ceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCccccc
Q 001163          646 PCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAA  725 (1134)
Q Consensus       646 ~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  725 (1134)
                      .++.|+|++..+++++.|+.+.+|+..... ......                                           
T Consensus       288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~-------------------------------------------  323 (466)
T COG2319         288 LSVAFSPDGKLLASGSSDGTVRLWDLETGK-LLSSLT-------------------------------------------  323 (466)
T ss_pred             EEEEECCCCCEEEEeeCCCcEEEEEcCCCc-eEEEee-------------------------------------------
Confidence            999999988888889999999999776652 111110                                           


Q ss_pred             ccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeee-ccCCeEEeee
Q 001163          726 MVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILAL-ASNAVHKLWK  804 (1134)
Q Consensus       726 ~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~-~~dg~i~vw~  804 (1134)
                                                                    ...|...+..+.|.+++..++.+ ..|+.+.+|+
T Consensus       324 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  357 (466)
T COG2319         324 ----------------------------------------------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD  357 (466)
T ss_pred             ----------------------------------------------ecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence                                                          00134457777773332455555 5678888887


Q ss_pred             cCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEE-ee-CCeEEEEEccCCeEEEEecC
Q 001163          805 WPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMS-AS-GGKISLFNMMTFKTMTTFMP  882 (1134)
Q Consensus       805 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~-~s-dg~i~lwd~~~~~~~~~~~~  882 (1134)
                      +....                     ....  ..   ....+..+.+++ ...+.. +. ++.+.+|+............
T Consensus       358 ~~~~~---------------------~~~~--~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (466)
T COG2319         358 LRTGK---------------------PLKT--LE---GHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDG  410 (466)
T ss_pred             cCCCc---------------------eeEE--ec---CCceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccC
Confidence            65321                     0000  10   112278888888 544444 34 78999999998888777765


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEccc
Q 001163          883 PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV  916 (1134)
Q Consensus       883 ~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~  916 (1134)
                      +...+....+++ ++..++.++.++.+++|+..+
T Consensus       411 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         411 HTSRVTSLDFSP-DGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             CCCcEEEEEECC-CCcEEEEecCCCcEEEEeccC
Confidence            447899999999 888999999999999999987

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.82  E-value=7.6e-19  Score=176.27  Aligned_cols=173  Identities=21%  Similarity=0.389  Sum_probs=144.7

Q ss_pred             CceeEEEee-cCCCeeEEEEcC--CCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEE
Q 001163          346 PKTVVMTLN-QGSAVKSMDFHP--VQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVN  422 (1134)
Q Consensus       346 ~~~~~~~~~-h~~~V~~v~fsp--~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  422 (1134)
                      ..+.+.+++ |...=++++|||  .|+  +++|..-+.|++|...+|.-...                ..-+.+|+..|-
T Consensus       200 ~~~Pl~t~~ghk~EGy~LdWSp~~~g~--LlsGDc~~~I~lw~~~~g~W~vd----------------~~Pf~gH~~SVE  261 (440)
T KOG0302|consen  200 EFRPLFTFNGHKGEGYGLDWSPIKTGR--LLSGDCVKGIHLWEPSTGSWKVD----------------QRPFTGHTKSVE  261 (440)
T ss_pred             ccCceEEecccCccceeeecccccccc--cccCccccceEeeeeccCceeec----------------Cccccccccchh
Confidence            456777777 899999999999  454  57888889999999988753221                111567999999


Q ss_pred             EEEEcC-CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCC---Cc
Q 001163          423 RVMWSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT---GT  498 (1134)
Q Consensus       423 ~l~~sp-d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~---~~  498 (1134)
                      .++||| ....+|+||.||+|+|||++.+..-... ..+.|.+.|+.+.|+.+-.  +|++|+.||+++|||+++   ++
T Consensus       262 DLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~-~~kAh~sDVNVISWnr~~~--lLasG~DdGt~~iwDLR~~~~~~  338 (440)
T KOG0302|consen  262 DLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV-STKAHNSDVNVISWNRREP--LLASGGDDGTLSIWDLRQFKSGQ  338 (440)
T ss_pred             hhccCCccCceEEeeecCceEEEEEecCCCcccee-EeeccCCceeeEEccCCcc--eeeecCCCceEEEEEhhhccCCC
Confidence            999999 4568999999999999999998433333 2488999999999998887  899999999999999874   57


Q ss_pred             eeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCC
Q 001163          499 KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN  540 (1134)
Q Consensus       499 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~  540 (1134)
                      ++..|+-|..+|+++.|+|..+ ..|++++.|..|.+||+..
T Consensus       339 pVA~fk~Hk~pItsieW~p~e~-s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  339 PVATFKYHKAPITSIEWHPHED-SVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             cceeEEeccCCeeEEEeccccC-ceEEeccCCCcEEEEEeec
Confidence            8889999999999999998776 5788889999999999864

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.82  E-value=1.2e-18  Score=171.75  Aligned_cols=339  Identities=18%  Similarity=0.256  Sum_probs=228.7

Q ss_pred             cccccCCCCEEEEEEcC----C-CCEEEEEeCCCEEEEEEccCCceeeeeeee--ecCCCCEEEEEEecCCC--ceEEEE
Q 001163          412 SLSSDYTASVNRVMWSP----D-GTLFGVAYSKHIVHLYTYHGGDELRNHLEI--EAHVGSVNDLAFSYPNK--QLSVVT  482 (1134)
Q Consensus       412 ~~~~~h~~~V~~l~~sp----d-~~~las~s~dg~v~iwd~~~~~~~~~~~~l--~~h~~~V~~v~~s~~~~--~~~l~s  482 (1134)
                      .+..+|+.+|..++|++    + -..+|+.+. ..+.+|+......++.+...  ..|......++|+-|..  ..++|.
T Consensus        32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~  110 (385)
T KOG1034|consen   32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA  110 (385)
T ss_pred             ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence            34678999999999996    2 234555544 46899988765433322222  24788899999987643  348899


Q ss_pred             EeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeee---cCCCCCeeEEEE
Q 001163          483 CGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY---DAPGHSSTMMAY  559 (1134)
Q Consensus       483 ~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~  559 (1134)
                      |+.-|.|+|.|+.++++...+.+|...|+.+.++|... ++++++|.|.+||+|++++..++..+   .+|...|.++.|
T Consensus       111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~-qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~  189 (385)
T KOG1034|consen  111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRP-QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF  189 (385)
T ss_pred             ecceeEEEEEecchhhhccceeccCccchhhhcCCCCC-cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence            99999999999999999999999999999999988654 79999999999999999999888875   457779999999


Q ss_pred             CcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecC
Q 001163          560 SADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD  639 (1134)
Q Consensus       560 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  639 (1134)
                      +++|.++++++.|.    .|.+|++...+....++.       +..|+|++...-.-  .-...+.++.      +..  
T Consensus       190 ~~~gd~i~ScGmDh----slk~W~l~~~~f~~~lE~-------s~~~~~~~t~~pfp--t~~~~fp~fs------t~d--  248 (385)
T KOG1034|consen  190 SLDGDRIASCGMDH----SLKLWRLNVKEFKNKLEL-------SITYSPNKTTRPFP--TPKTHFPDFS------TTD--  248 (385)
T ss_pred             cCCCCeeeccCCcc----eEEEEecChhHHhhhhhh-------hcccCCCCccCcCC--cccccccccc------ccc--
Confidence            99999999998754    599999986544332222       23455554321000  0011222221      112  


Q ss_pred             CCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCC
Q 001163          640 GGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGER  719 (1134)
Q Consensus       640 ~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  719 (1134)
                      -|...|-|+.|-  |+++++-+-++.|..|......+.+..........                               
T Consensus       249 iHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~-------------------------------  295 (385)
T KOG1034|consen  249 IHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESAT-------------------------------  295 (385)
T ss_pred             cccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccce-------------------------------
Confidence            346678888886  57999988899999998632211111111100000                               


Q ss_pred             CcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCe
Q 001163          720 TAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAV  799 (1134)
Q Consensus       720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~  799 (1134)
                                                                 .....+..+.  -.-.....+|.|-++.|+.|.+.|.
T Consensus       296 -------------------------------------------Ti~~~~~~~~--c~iWfirf~~d~~~~~la~gnq~g~  330 (385)
T KOG1034|consen  296 -------------------------------------------TILGEFDYPM--CDIWFIRFAFDPWQKMLALGNQSGK  330 (385)
T ss_pred             -------------------------------------------eeeeEeccCc--cceEEEEEeecHHHHHHhhccCCCc
Confidence                                                       0000011110  1122334577788999999999999


Q ss_pred             EEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEcc
Q 001163          800 HKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMM  872 (1134)
Q Consensus       800 i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~  872 (1134)
                      +.+||+.....                 .+...+...    --...|+..+||.||.+|+... |++|.-||.-
T Consensus       331 v~vwdL~~~ep-----------------~~~ttl~~s----~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  331 VYVWDLDNNEP-----------------PKCTTLTHS----KSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             EEEEECCCCCC-----------------ccCceEEec----cccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            99999875422                 111111111    1356789999999999888776 8999999853

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=4.2e-17  Score=177.91  Aligned_cols=627  Identities=11%  Similarity=0.083  Sum_probs=362.6

Q ss_pred             CCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCC-------
Q 001163          357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD-------  429 (1134)
Q Consensus       357 ~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-------  429 (1134)
                      ..-.++.|+|.|  |+|.|+. ..|.+-|..+-+.+..                   +..|...|+.+.|.|-       
T Consensus        16 sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~ll   73 (1062)
T KOG1912|consen   16 SNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRDLL   73 (1062)
T ss_pred             ccccccccCccc--eEEEecC-ceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchhcc
Confidence            345689999999  6777765 3688889887776653                   5669999999999872       


Q ss_pred             -----CCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecC---CCceEEEEEeCCCeEEEEECCCCceeE
Q 001163          430 -----GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP---NKQLSVVTCGEDRVIKVWDAVTGTKQY  501 (1134)
Q Consensus       430 -----~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~---~~~~~l~s~s~d~~i~iwd~~~~~~~~  501 (1134)
                           .-+||++...|.|.+||...+....   .++.|..++..++|-+.   .+. +|+.-..-.++.+|+..+|+...
T Consensus        74 S~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k~W  149 (1062)
T KOG1912|consen   74 SPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEKFW  149 (1062)
T ss_pred             CccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCceee
Confidence                 1267888889999999999887554   57789999999999763   323 66666777899999999999998


Q ss_pred             EecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCC------ceeeecCC-C------------C----------
Q 001163          502 IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG------SRVDYDAP-G------------H----------  552 (1134)
Q Consensus       502 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~------~~~~~~~~-~------------~----------  552 (1134)
                      ..........|+.+.|-...++.+.+ ..|.+.+.+.-...      ....+... .            .          
T Consensus       150 k~~ys~~iLs~f~~DPfd~rh~~~l~-s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~  228 (1062)
T KOG1912|consen  150 KYDYSHEILSCFRVDPFDSRHFCVLG-SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAY  228 (1062)
T ss_pred             ccccCCcceeeeeeCCCCcceEEEEc-cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchh
Confidence            87766666777777665443444444 44666555432111      11111110 0            0          


Q ss_pred             ---CeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCC--CEEEEEeCCCeEEEEEc
Q 001163          553 ---SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK--NRFLAAGDEFMIKFWDM  627 (1134)
Q Consensus       553 ---~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~  627 (1134)
                         -...++|+|.-+.++.....+    .+.++|++-..++....-..+ .+.-+.+-|+.  ..|++.-.||.+.+|-.
T Consensus       229 fity~a~faf~p~~rn~lfi~~pr----ellv~dle~~~~l~vvpier~-~akfv~vlP~~~rd~LfclH~nG~ltirvr  303 (1062)
T KOG1912|consen  229 FITYCAQFAFSPHWRNILFITFPR----ELLVFDLEYECCLAVVPIERG-GAKFVDVLPDPRRDALFCLHSNGRLTIRVR  303 (1062)
T ss_pred             HHHHHHhhhcChhhhceEEEEecc----ceEEEcchhhceeEEEEeccC-CcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence               012356788666555444433    399999998888877765554 44556666655  67899999999999976


Q ss_pred             CC----------------CceeEEEecCCCCCCcceEEEcCC-CcEEEEEECCCcEEEEEccCCceeEEEeccCcccccc
Q 001163          628 DN----------------VNLLASIDADGGLQASPCIRFNKE-GILLAVSTNDNGIKILANADGIRLLRTVESRTFDASR  690 (1134)
Q Consensus       628 ~~----------------~~~~~~~~~~~~~~~v~~v~~sp~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  690 (1134)
                      +.                ++....+...... ........|. ...++.--.+|.+.+|.+.++........+.......
T Consensus       304 k~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~-rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~p  382 (1062)
T KOG1912|consen  304 KEEPTEFKKPNASLSMDLGEQVHVVRPMEEF-RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLP  382 (1062)
T ss_pred             eccCccccccchhhccccccceEEEeechhc-ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccccc
Confidence            54                2222222211111 1223333443 4455555667888899988652111111100000000


Q ss_pred             cchhhhhcccccccccccccccccCc-------CCCCcccc--cccCCCCCCc-cCcccccccccccccccceeeecccC
Q 001163          691 VASAAIVKAPAIGTFGSANANVGTSL-------GERTAPAA--AMVGMSNDSR-NFTDVKPKIADEAVEKSRIWKLTEIT  760 (1134)
Q Consensus       691 ~~~~~~~~~~~~~~~~~~~~~~s~~~-------~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~d~~i~iw~~~~~~  760 (1134)
                      ....    ...+.........++.|+       +.+..|+.  +.+.-.+.++ .......++.|...|+|.++|+....
T Consensus       383 f~f~----~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~  458 (1062)
T KOG1912|consen  383 FDFN----LSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNA  458 (1062)
T ss_pred             cccc----CceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchh
Confidence            0000    000000111111233332       11222222  2222222111 12233556788889999999998644


Q ss_pred             CccceeccccCCccccccEEEEEEecCCceeeeeccC--CeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCC
Q 001163          761 EPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASN--AVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDIS  838 (1134)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  838 (1134)
                      .....       ..|...|.++.|....+.+-.+...  ....+               ....+.+-|+.+|.-....-.
T Consensus       459 v~~~f-------svht~~VkgleW~g~sslvSfsys~~n~~sg~---------------vrN~l~vtdLrtGlsk~fR~l  516 (1062)
T KOG1912|consen  459 VAASF-------SVHTSLVKGLEWLGNSSLVSFSYSHVNSASGG---------------VRNDLVVTDLRTGLSKRFRGL  516 (1062)
T ss_pred             hhhhh-------cccccceeeeeeccceeEEEeeeccccccccc---------------eeeeEEEEEcccccccccccC
Confidence            33222       2388999999998887755444331  10011               111234457777765443321


Q ss_pred             CCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEc-CC---------------CCcEEE
Q 001163          839 DTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFH-PQ---------------DNNIIA  901 (1134)
Q Consensus       839 ~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~s-p~---------------~~~~la  901 (1134)
                      ....+.+|+.+..|.-|+||+..- +.-+.+||+.+..+++.....-.-++.++|+ |.               ..+.++
T Consensus       517 ~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv  596 (1062)
T KOG1912|consen  517 QKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVV  596 (1062)
T ss_pred             CCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhceee
Confidence            224678999999999999999998 8889999998888777665455558999998 31               112333


Q ss_pred             EEeCCCcEEEEEccc-------ceE-EEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCC
Q 001163          902 IGMEDSSIQIYNVRV-------DEV-KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGR  973 (1134)
Q Consensus       902 ~g~~dg~i~iwd~~~-------~~~-~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~  973 (1134)
                      ..+  +..+++.+..       +.. ....+...-.+.+++|  .+..|+.|..+|.+.+||+.......  ....+.. 
T Consensus       597 ~ds--~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg--~~d~p~~-  669 (1062)
T KOG1912|consen  597 LDS--VESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRG--VRDSPDP-  669 (1062)
T ss_pred             ecc--ccchheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccC--ccCCCCc-
Confidence            333  2334443321       111 1111222233445666  47789999999999999987633221  0111110 


Q ss_pred             CCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCc
Q 001163          974 TASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLR 1053 (1134)
Q Consensus       974 ~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~ 1053 (1134)
                         ........+-|....+++-...-+-+||.+....+..+....-+-.+..+.+......++  ..|+++|+-.+....
T Consensus       670 ---ra~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~siag~dssfrlldvdlc~~~~~~l--~~d~~~Rf~~m~mks  744 (1062)
T KOG1912|consen  670 ---RAHSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSIAGMDSSFRLLDVDLCEKSPLVL--PNDNKERFRVMPMKS  744 (1062)
T ss_pred             ---hhhheecccCCCCceEEEEecCcceecccccceeeeeeccCCcceEEEEEEecccCceec--CCCCceeEEeccccC
Confidence               022334445565444445455668899998887777664222234455555544433333  234467766655444


Q ss_pred             c
Q 001163         1054 L 1054 (1134)
Q Consensus      1054 ~ 1054 (1134)
                      .
T Consensus       745 ~  745 (1062)
T KOG1912|consen  745 P  745 (1062)
T ss_pred             C
Confidence            3

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.81  E-value=2.4e-18  Score=169.14  Aligned_cols=288  Identities=15%  Similarity=0.205  Sum_probs=208.3

Q ss_pred             eeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc-------CCCC
Q 001163          359 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS-------PDGT  431 (1134)
Q Consensus       359 V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-------pd~~  431 (1134)
                      ...+.|||||..| .+-+.|..+.+|++...-.-....-.      ...+....+-......|...+|-       |+..
T Consensus        52 ~kgckWSPDGSci-L~~sedn~l~~~nlP~dlys~~~~~~------~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~  124 (406)
T KOG2919|consen   52 LKGCKWSPDGSCI-LSLSEDNCLNCWNLPFDLYSKKADGP------LNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN  124 (406)
T ss_pred             hccceeCCCCceE-EeecccCeeeEEecChhhcccCCCCc------cccccceeEEeccCCEEEEEEeeeccccCCCccc
Confidence            3478999999966 46788999999998532110000000      00000111111234577777775       6788


Q ss_pred             EEEEEeCCCEEEEEEccCCceeeeeeeeecCCCC---EEEEEEecCCCceEEEEEeCCCeEEEEEC-CCCcee--EEec-
Q 001163          432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGS---VNDLAFSYPNKQLSVVTCGEDRVIKVWDA-VTGTKQ--YIFE-  504 (1134)
Q Consensus       432 ~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~---V~~v~~s~~~~~~~l~s~s~d~~i~iwd~-~~~~~~--~~~~-  504 (1134)
                      ++|+.+.+.-|++||.-+|+..... ....|...   -.+++|+|||.+  |+ ++..++|+++|+ +.|+.-  +... 
T Consensus       125 l~a~ssr~~PIh~wdaftG~lraSy-~~ydh~de~taAhsL~Fs~DGeq--lf-aGykrcirvFdt~RpGr~c~vy~t~~  200 (406)
T KOG2919|consen  125 LFAVSSRDQPIHLWDAFTGKLRASY-RAYDHQDEYTAAHSLQFSPDGEQ--LF-AGYKRCIRVFDTSRPGRDCPVYTTVT  200 (406)
T ss_pred             eeeeccccCceeeeeccccccccch-hhhhhHHhhhhheeEEecCCCCe--Ee-ecccceEEEeeccCCCCCCcchhhhh
Confidence            9999999999999999999854422 23335443   468999999994  44 456689999998 555432  2221 


Q ss_pred             ----CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEE
Q 001163          505 ----GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLV  580 (1134)
Q Consensus       505 ----~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~  580 (1134)
                          +..+-|.+++|+|... ..++.++...++-++.-...+....+.+|.+.|+.+.|.++|+.|++++.-   +..|.
T Consensus       201 ~~k~gq~giisc~a~sP~~~-~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk---~dkIl  276 (406)
T KOG2919|consen  201 KGKFGQKGIISCFAFSPMDS-KTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK---DDKIL  276 (406)
T ss_pred             cccccccceeeeeeccCCCC-cceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccC---CCeEE
Confidence                2366788889988654 589999999999999888888888888999999999999999999998753   44699


Q ss_pred             EEeCCCC-eeEEEecCCCCCceEE--EEEcCCCCEEEEEeCCCeEEEEEcCC-CceeEEEecCCCCCCcceEEEcCCCcE
Q 001163          581 EWNESEG-AVKRTYHGLGKRSVGV--VQFDTTKNRFLAAGDEFMIKFWDMDN-VNLLASIDADGGLQASPCIRFNKEGIL  656 (1134)
Q Consensus       581 ~wd~~~~-~~~~~~~~~~~~~v~~--~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~sp~~~~  656 (1134)
                      +||++.. .++..+..|....-..  ....|++++|++|+.||.|++||+.+ +..+..+..+  ...++.++++|--.+
T Consensus       277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~--sd~vNgvslnP~mpi  354 (406)
T KOG2919|consen  277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNY--SDTVNGVSLNPIMPI  354 (406)
T ss_pred             EEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccc--cccccceecCcccce
Confidence            9999864 5556666654422223  34568899999999999999999998 7767776655  668999999999888


Q ss_pred             EEEEECC
Q 001163          657 LAVSTND  663 (1134)
Q Consensus       657 l~~~~~d  663 (1134)
                      +++++..
T Consensus       355 latssGq  361 (406)
T KOG2919|consen  355 LATSSGQ  361 (406)
T ss_pred             eeeccCc
Confidence            8887754

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.81  E-value=2.7e-18  Score=173.32  Aligned_cols=237  Identities=15%  Similarity=0.224  Sum_probs=186.9

Q ss_pred             ccccCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEEccCCcee----eeeeeeecCCCCEEEEEEecCCCceEEEEEeCCC
Q 001163          413 LSSDYTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDEL----RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR  487 (1134)
Q Consensus       413 ~~~~h~~~V~~l~~sp-d~~~las~s~dg~v~iwd~~~~~~~----~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~  487 (1134)
                      .+.||+++|..++|+| +...+|+||.|.+|.||++..+...    .....|.||...|-.++|+|...+ .|+|++.|+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn  154 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN  154 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence            4789999999999999 7889999999999999999765432    234468999999999999998877 799999999


Q ss_pred             eEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCC-CeeEEEECcCCCEE
Q 001163          488 VIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH-SSTMMAYSADGARL  566 (1134)
Q Consensus       488 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l  566 (1134)
                      +|.+||+.+|+.+.++. |...|.+++|+  .||.++++.+.|+.|||||.+.++....-..|.+ .-..+.|-.+|. +
T Consensus       155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn--~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i  230 (472)
T KOG0303|consen  155 TVSIWNVGTGEALITLD-HPDMVYSMSFN--RDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I  230 (472)
T ss_pred             eEEEEeccCCceeeecC-CCCeEEEEEec--cCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence            99999999999999988 99999999985  4568999999999999999998887777655554 455667888888 7


Q ss_pred             EEEecCCCCCeEEEEEeCCCCee-EEEecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCce-eEEEecCCCCC
Q 001163          567 FSCGTNKEGESYLVEWNESEGAV-KRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNL-LASIDADGGLQ  643 (1134)
Q Consensus       567 ~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~~~~  643 (1134)
                      ++.+.++-.+..+-+||...-+. +..........|.--.|.+|.+.++.+| .|+.|+-|.+....+ +..+.......
T Consensus       231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~e  310 (472)
T KOG0303|consen  231 FTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKE  310 (472)
T ss_pred             eeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCC
Confidence            77777777788999999775432 2222223333566667889999888887 899999999987663 33333222334


Q ss_pred             CcceEEEcCCC
Q 001163          644 ASPCIRFNKEG  654 (1134)
Q Consensus       644 ~v~~v~~sp~~  654 (1134)
                      +-..+.|-|..
T Consensus       311 pQRG~g~mPKR  321 (472)
T KOG0303|consen  311 PQRGMGFMPKR  321 (472)
T ss_pred             ccccccccccc
Confidence            45567777653

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=4.2e-19  Score=203.54  Aligned_cols=261  Identities=14%  Similarity=0.170  Sum_probs=201.2

Q ss_pred             EEEeecCCCeeEEEEcCCCCe---EEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEE
Q 001163          350 VMTLNQGSAVKSMDFHPVQQI---LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW  426 (1134)
Q Consensus       350 ~~~~~h~~~V~~v~fsp~g~~---lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  426 (1134)
                      +-.+......+.++|.+.|..   +||.|..||.|.+||...-.  ...          ... .......|++.|..+.|
T Consensus        58 ~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~--~~~----------~~~-~la~~~~h~G~V~gLDf  124 (1049)
T KOG0307|consen   58 VGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII--ANA----------SEE-VLATKSKHTGPVLGLDF  124 (1049)
T ss_pred             cccccccccceeeeecccCCCccceeeccccCCceEEecchhhc--cCc----------chH-HHhhhcccCCceeeeec
Confidence            334445678899999998887   68999999999999986520  000          000 11125779999999999


Q ss_pred             cCC-CCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecC
Q 001163          427 SPD-GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG  505 (1134)
Q Consensus       427 spd-~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  505 (1134)
                      ++. +++||+|+.||.|.|||+..-+...... -..-.+.|.+++|+..-.+ .|++++.+|.+.|||++..+.+-.+..
T Consensus       125 N~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~  202 (1049)
T KOG0307|consen  125 NPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSD  202 (1049)
T ss_pred             cccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCccccccc
Confidence            995 5599999999999999998754332111 1124567999999987766 799999999999999999988877766


Q ss_pred             CCc--CEEEEeccccCCccEEEEecCC-C--cEEEEecCCCC-ceeeecCCCCCeeEEEECcCC-CEEEEEecCCCCCeE
Q 001163          506 HES--PVYSICPHHKENIQFIFSTATD-G--KIKAWLYDNLG-SRVDYDAPGHSSTMMAYSADG-ARLFSCGTNKEGESY  578 (1134)
Q Consensus       506 h~~--~v~~~~~~~~~~~~~l~s~s~d-g--~i~vwd~~~~~-~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~  578 (1134)
                      |.+  .+..+.|+|+... .|++++.| +  .|.+||++... ....+..|...|.++.|++.+ ++|++++.|+    .
T Consensus       203 ~~~~~~~S~l~WhP~~aT-ql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~----~  277 (1049)
T KOG0307|consen  203 TPGRMHCSVLAWHPDHAT-QLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDN----R  277 (1049)
T ss_pred             CCCccceeeeeeCCCCce-eeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCC----C
Confidence            654  4678899987764 45555544 3  49999988654 444567888899999999977 7778877544    5


Q ss_pred             EEEEeCCCCeeEEEecCCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCc
Q 001163          579 LVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNVN  631 (1134)
Q Consensus       579 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~  631 (1134)
                      |.+|+.++++.+..+....+ .+..+.|+|... .+++++.||.|.|+.+.+..
T Consensus       278 ii~wN~~tgEvl~~~p~~~n-W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  278 IICWNPNTGEVLGELPAQGN-WCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             eeEecCCCceEeeecCCCCc-ceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            99999999999999988554 899999999886 67777899999999987654

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.80  E-value=7.3e-18  Score=173.73  Aligned_cols=313  Identities=11%  Similarity=0.103  Sum_probs=222.9

Q ss_pred             ECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCC----CceeeecCCCCCeeEEEECcCC-CEEE
Q 001163          493 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL----GSRVDYDAPGHSSTMMAYSADG-ARLF  567 (1134)
Q Consensus       493 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~s~~~-~~l~  567 (1134)
                      |+.+-......+-+..+|++++|+|..+..++++|+.-|.|-+||+...    .....+..|..+|.++.|+|.. ..++
T Consensus       172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~  251 (498)
T KOG4328|consen  172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIY  251 (498)
T ss_pred             ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhee
Confidence            3344445555666889999999999998889999999999999999532    2344567788899999999955 5677


Q ss_pred             EEecCCCCCeEEEEEeCCCCeeEEEecCC-CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce-eEEEecCCCCCCc
Q 001163          568 SCGTNKEGESYLVEWNESEGAVKRTYHGL-GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL-LASIDADGGLQAS  645 (1134)
Q Consensus       568 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v  645 (1134)
                      +.+.|+    .|++-|++.+.....+... ....+..+.|+.+...++.++.=|.+.+||++++.. ...+..|  ...|
T Consensus       252 ssSyDG----tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh--~kKI  325 (498)
T KOG4328|consen  252 SSSYDG----TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLH--KKKI  325 (498)
T ss_pred             eeccCc----eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhh--hccc
Confidence            776644    5999999876443333331 122567788888888899998888999999997654 5555555  4489


Q ss_pred             ceEEEcC-CCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccc
Q 001163          646 PCIRFNK-EGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAA  724 (1134)
Q Consensus       646 ~~v~~sp-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  724 (1134)
                      ..++++| ...+|++++.|++.+|||+....       +....                                     
T Consensus       326 ~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~-------~K~sp-------------------------------------  361 (498)
T KOG4328|consen  326 TSVALNPVCPWFLATASLDQTAKIWDLRQLR-------GKASP-------------------------------------  361 (498)
T ss_pred             ceeecCCCCchheeecccCcceeeeehhhhc-------CCCCc-------------------------------------
Confidence            9999999 45789999999999999986531       10000                                     


Q ss_pred             cccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeee
Q 001163          725 AMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWK  804 (1134)
Q Consensus       725 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~  804 (1134)
                                                 .+..                 ..|...|.+..|||+|..|++.+.|..|+|||
T Consensus       362 ---------------------------~lst-----------------~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~d  397 (498)
T KOG4328|consen  362 ---------------------------FLST-----------------LPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFD  397 (498)
T ss_pred             ---------------------------ceec-----------------ccccceeeeeEEcCCCCceEeeccCCceEEee
Confidence                                       0001                 12888999999999999999999999999998


Q ss_pred             cCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCC
Q 001163          805 WPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPP  883 (1134)
Q Consensus       805 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~  883 (1134)
                      ..              .+.-|+...+........+  .--.....+|.||..++++|. -..|-|+|-..++.+..+..+
T Consensus       398 ss--------------~~sa~~~p~~~I~Hn~~t~--RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P  461 (498)
T KOG4328|consen  398 SS--------------CISAKDEPLGTIPHNNRTG--RWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDP  461 (498)
T ss_pred             cc--------------cccccCCccceeeccCccc--ccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCc
Confidence            53              1112233333322211111  011123468999999999998 677999999999988887554


Q ss_pred             CC-CeEE-EEEcCCCCcEEEEEeCCCcEEEEEcc
Q 001163          884 PP-AATF-LAFHPQDNNIIAIGMEDSSIQIYNVR  915 (1134)
Q Consensus       884 ~~-~v~~-l~~sp~~~~~la~g~~dg~i~iwd~~  915 (1134)
                      .. .|.+ ..|+|-+..++|-++..|.|+||.-+
T Consensus       462 ~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  462 ESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             cccccccceeecccccceeccCCccceEEEEecC
Confidence            43 4554 57999444466666778889988644

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.79  E-value=3.2e-18  Score=175.87  Aligned_cols=266  Identities=11%  Similarity=0.143  Sum_probs=189.1

Q ss_pred             CeeEEEEcCC-------CCeEEEEEeCCCcEEEEecCCccceeeeceeeeecc---ccCccccccccccCCCCEEEEEEc
Q 001163          358 AVKSMDFHPV-------QQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELG---ACSMPLQASLSSDYTASVNRVMWS  427 (1134)
Q Consensus       358 ~V~~v~fsp~-------g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~h~~~V~~l~~s  427 (1134)
                      ...|++|...       |+ ++|.|+.|..|.|||+.-...+.- .+.+=...   ............+|++.|.+++|+
T Consensus       175 fPLC~ewld~~~~~~~~gN-yvAiGtmdp~IeIWDLDI~d~v~P-~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n  252 (463)
T KOG0270|consen  175 FPLCIEWLDHGSKSGGAGN-YVAIGTMDPEIEIWDLDIVDAVLP-CVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN  252 (463)
T ss_pred             cchhhhhhhcCCCCCCCcc-eEEEeccCceeEEecccccccccc-ceeechhhhhhhhhhcccccccccchHHHHHHHhc
Confidence            3456666433       45 679999999999999864322210 00000000   000001112245899999999999


Q ss_pred             C-CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCC
Q 001163          428 P-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH  506 (1134)
Q Consensus       428 p-d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h  506 (1134)
                      . -.+.||+||.|.+|++||+.+|++..   ++..|.+.|.+++|+|.... +|++|+.|++|.+.|.+........-..
T Consensus       253 ~~~~nVLaSgsaD~TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~wk~  328 (463)
T KOG0270|consen  253 RNFRNVLASGSADKTVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEWKF  328 (463)
T ss_pred             cccceeEEecCCCceEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceEEe
Confidence            8 46789999999999999999998665   67789999999999998776 8999999999999999854333222235


Q ss_pred             CcCEEEEeccccCCccEEEEecCCCcEEEEecCCC-CceeeecCCCCCeeEEEECcCCCEE-EEEecCCCCCeEEEEEeC
Q 001163          507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL-GSRVDYDAPGHSSTMMAYSADGARL-FSCGTNKEGESYLVEWNE  584 (1134)
Q Consensus       507 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~~~~~~~~i~~wd~  584 (1134)
                      .+.|-.++|.+... ..++++..||+|+-+|++.. ++...+..|..+|.++++++.-..+ ++++    .+..+.+|++
T Consensus       329 ~g~VEkv~w~~~se-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s----~d~~Vklw~~  403 (463)
T KOG0270|consen  329 DGEVEKVAWDPHSE-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS----TDKVVKLWKF  403 (463)
T ss_pred             ccceEEEEecCCCc-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc----ccceEEEEee
Confidence            67788899987654 67888899999999999987 6778889999999999999876654 4444    3557999998


Q ss_pred             CCCeeEEEecC-CCCCceEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCceeE
Q 001163          585 SEGAVKRTYHG-LGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNVNLLA  634 (1134)
Q Consensus       585 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~  634 (1134)
                      ........... ..-+...|.++.|+-. .++.|+..+.++|||+.+...+.
T Consensus       404 ~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  404 DVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             cCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence            75443221111 1111355667777764 45667788889999998876543

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.79  E-value=1.4e-17  Score=163.70  Aligned_cols=227  Identities=15%  Similarity=0.158  Sum_probs=169.9

Q ss_pred             ecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCC---CCeeEEEEcCCCCeEEEe
Q 001163          785 TNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPE---DAVPCFALSKNDSYVMSA  861 (1134)
Q Consensus       785 spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~---~~v~~v~~s~dg~~la~~  861 (1134)
                      -|+..++++.+.+.-|++||.-+++                      +... .....|.   ....+++|+|||..|.+|
T Consensus       120 qP~t~l~a~ssr~~PIh~wdaftG~----------------------lraS-y~~ydh~de~taAhsL~Fs~DGeqlfaG  176 (406)
T KOG2919|consen  120 QPSTNLFAVSSRDQPIHLWDAFTGK----------------------LRAS-YRAYDHQDEYTAAHSLQFSPDGEQLFAG  176 (406)
T ss_pred             CCccceeeeccccCceeeeeccccc----------------------cccc-hhhhhhHHhhhhheeEEecCCCCeEeec
Confidence            3677788888899999988765432                      2111 1111122   234689999999999999


Q ss_pred             eCCeEEEEEc-cCCeEE---EEec----CCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEE
Q 001163          862 SGGKISLFNM-MTFKTM---TTFM----PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGL  933 (1134)
Q Consensus       862 sdg~i~lwd~-~~~~~~---~~~~----~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l  933 (1134)
                      ...+|+++|+ ..|+.-   .++.    +..+-+.|++|+|.+.+.+|+|+....+-||.-..+.++..+-+|.+.|+.+
T Consensus       177 ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL  256 (406)
T KOG2919|consen  177 YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHL  256 (406)
T ss_pred             ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeE
Confidence            9999999999 444321   2221    2346689999999888899999999999999999999999999999999999


Q ss_pred             EEeeCCCEEEEEeC-CCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEE--cCCCCEEEEE-eeceEEEEeCCC-c
Q 001163          934 AFSNTLNVLVSSGA-DSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQF--HLDQTHLLAV-HETQIAIYEAPK-L 1008 (1134)
Q Consensus       934 ~~s~d~~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~f--s~dg~~l~~~-~d~~i~iwd~~~-~ 1008 (1134)
                      .|.+||+.|++|+. |..|..||+...+.    .+-....|..  ..-..+-|  .|+|++|++| .||.|++||+++ +
T Consensus       257 ~~~edGn~lfsGaRk~dkIl~WDiR~~~~----pv~~L~rhv~--~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g  330 (406)
T KOG2919|consen  257 QWCEDGNKLFSGARKDDKILCWDIRYSRD----PVYALERHVG--DTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG  330 (406)
T ss_pred             EeccCcCeecccccCCCeEEEEeehhccc----hhhhhhhhcc--CccceEEEecCCCCceeeccCCCccEEEEecCCCC
Confidence            99999999999986 67899999976432    1212222221  12344544  6889999996 999999999998 5


Q ss_pred             ccceeeccCCCccCEEEEEEccCCCEEEEEecCC
Q 001163         1009 ECLKQFVPREASGPITHATYSCDSQSIYVAFEEG 1042 (1134)
Q Consensus      1009 ~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg 1042 (1134)
                      +.+..+.  .|+..+..+++.|-=.++++++...
T Consensus       331 n~~sv~~--~~sd~vNgvslnP~mpilatssGqr  362 (406)
T KOG2919|consen  331 NEVSVTG--NYSDTVNGVSLNPIMPILATSSGQR  362 (406)
T ss_pred             Ccccccc--cccccccceecCcccceeeeccCce
Confidence            5454444  6789999999999977788877543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.79  E-value=1.9e-17  Score=168.38  Aligned_cols=301  Identities=17%  Similarity=0.184  Sum_probs=216.1

Q ss_pred             cccEEEEEEecCCc-eeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC
Q 001163          776 AMRVSRLIYTNSGL-AILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN  854 (1134)
Q Consensus       776 ~~~i~~l~~spdg~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d  854 (1134)
                      ..++.++.|.+++. .+++++.|..|++|.+........+.              .......+..  |...|+++.|+|+
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~--------------~V~y~s~Ls~--H~~aVN~vRf~p~   76 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDM--------------KVEYLSSLSR--HTRAVNVVRFSPD   76 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCce--------------eEEEeecccC--CcceeEEEEEcCC
Confidence            46789999999877 99999999999999887543211110              0111222444  9999999999999


Q ss_pred             CCeEEEee-CCeEEEEEcc--------C--------CeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccc
Q 001163          855 DSYVMSAS-GGKISLFNMM--------T--------FKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD  917 (1134)
Q Consensus       855 g~~la~~s-dg~i~lwd~~--------~--------~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~  917 (1134)
                      |.+||+|+ +|.|.+|-..        +        +...+.+.+|...|..++|+| ++.++++|+-|..+++||+..|
T Consensus        77 gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G  155 (434)
T KOG1009|consen   77 GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAG  155 (434)
T ss_pred             cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccc
Confidence            99999999 6889999764        2        345566788999999999999 9999999999999999999999


Q ss_pred             eEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccce----------------eeeecCCCCCCCCCce
Q 001163          918 EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASK----------------FLTIPNGRTASALADT  981 (1134)
Q Consensus       918 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~----------------~~~~~~~~~~~~~~v~  981 (1134)
                      +....+.+|..-+..++|.|-++++++-+.|...+.+++...+.....                ...+..... ...-..
T Consensus       156 ~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeT-lksFFr  234 (434)
T KOG1009|consen  156 QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDET-LKSFFR  234 (434)
T ss_pred             eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCc-hhhhhh
Confidence            999999999999999999999999999999998777776553322110                011111000 012346


Q ss_pred             EEEEcCCCCEEEEE-----eece-----EEEEeCCCcc-cceeeccCCCccCEEEEEEcc------------------CC
Q 001163          982 RVQFHLDQTHLLAV-----HETQ-----IAIYEAPKLE-CLKQFVPREASGPITHATYSC------------------DS 1032 (1134)
Q Consensus       982 ~l~fs~dg~~l~~~-----~d~~-----i~iwd~~~~~-~~~~~~~~~h~~~v~~~~~s~------------------dg 1032 (1134)
                      .++|+|||.+|++.     ..+.     .++|+-...+ ....+.  .-......+.|+|                  -+
T Consensus       235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp--~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyr  312 (434)
T KOG1009|consen  235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLP--SPKKPALAVRFSPVYYELRPLSSEKFLFVLPYR  312 (434)
T ss_pred             hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecC--CCCcceEEEEeeeeEEEeccccccccccccccc
Confidence            78999999999871     2233     4566554332 222222  2244555555554                  22


Q ss_pred             CEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCCCCC
Q 001163         1033 QSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEG 1106 (1134)
Q Consensus      1033 ~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~~ 1106 (1134)
                      -.+|.++ .+.|.|||.++..+++...--      |-+.++.+  +|++ ||..|+..|.||...+-.+...|.
T Consensus       313 lvfaiAt-~~svyvydtq~~~P~~~v~ni------hy~~iTDi--aws~-dg~~l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  313 LVFAIAT-KNSVYVYDTQTLEPLAVVDNI------HYSAITDI--AWSD-DGSVLLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             eEEEEee-cceEEEeccccccceEEEeee------eeeeecce--eecC-CCcEEEEeccCCceEEEEEcchhc
Confidence            2344454 567999999999888766622      44556666  8888 799999999999888777765543

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=7.1e-16  Score=168.48  Aligned_cols=606  Identities=13%  Similarity=0.133  Sum_probs=346.9

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecC----------CCceEEEEEeCCCe
Q 001163          419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP----------NKQLSVVTCGEDRV  488 (1134)
Q Consensus       419 ~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~----------~~~~~l~s~s~d~~  488 (1134)
                      ..-.++.|+|.| ++|.|+.. .|.+-|..+-+.+.   .+.-|...|+.+.|.|.          ..+++|+++...|.
T Consensus        16 sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr   90 (1062)
T KOG1912|consen   16 SNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR   90 (1062)
T ss_pred             ccccccccCccc-eEEEecCc-eEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence            346778899876 67777655 58888888766554   67889999999999873          24557889999999


Q ss_pred             EEEEECCCCceeEEecCCCcCEEEEeccccCCc--cEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECc-CCCE
Q 001163          489 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENI--QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSA-DGAR  565 (1134)
Q Consensus       489 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~  565 (1134)
                      |.+||...+..+..+..|..++..++|.+..+.  .+|+.-....++.+|+.++++....+........++.+.| |.+.
T Consensus        91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh  170 (1062)
T KOG1912|consen   91 IILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH  170 (1062)
T ss_pred             EEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence            999999999999999999999999998776543  4666667778999999999998888887776777788888 3344


Q ss_pred             EEEEecCCCCCeEEEEEeC-CC------CeeEEEecCCCC----------------Cc--------eEEEEEcCCCCEEE
Q 001163          566 LFSCGTNKEGESYLVEWNE-SE------GAVKRTYHGLGK----------------RS--------VGVVQFDTTKNRFL  614 (1134)
Q Consensus       566 l~~~~~~~~~~~~i~~wd~-~~------~~~~~~~~~~~~----------------~~--------v~~~~~~~~~~~l~  614 (1134)
                      +..-+.    .+.+.+-+. ..      |+..+.-..|.+                .+        ...++|+|.-+.++
T Consensus       171 ~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l  246 (1062)
T KOG1912|consen  171 FCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL  246 (1062)
T ss_pred             EEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence            433332    112333221 11      122221111111                00        01246788777677


Q ss_pred             EEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCC--cEEEEEECCCcEEEEEccCCceeEEEeccCcccccccc
Q 001163          615 AAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG--ILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVA  692 (1134)
Q Consensus       615 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~  692 (1134)
                      .......+.++|++-..++..+....+  .+.-+.+-|++  ..|++...||.+.+|--......+++-..         
T Consensus       247 fi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~---------  315 (1062)
T KOG1912|consen  247 FITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNA---------  315 (1062)
T ss_pred             EEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccch---------
Confidence            777778899999999999988877633  45567777754  67999999999999976543222221100         


Q ss_pred             hhhhhcccccccccccccccccCcCCCCcccccccCCCC-CCccCcc-cccccccccccccceeeecccCCccceecccc
Q 001163          693 SAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSN-DSRNFTD-VKPKIADEAVEKSRIWKLTEITEPSQCRSLRL  770 (1134)
Q Consensus       693 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~  770 (1134)
                                        .++.+......-+.++..|-+ .+...|. ...++.-.+++.+.+|++.++........   
T Consensus       316 ------------------~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s---  374 (1062)
T KOG1912|consen  316 ------------------SLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRS---  374 (1062)
T ss_pred             ------------------hhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccc---
Confidence                              011111111111111111100 1111222 33444556678899999885332221111   


Q ss_pred             CCccccccEEEEEEecCC-----ceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCC
Q 001163          771 PDNLTAMRVSRLIYTNSG-----LAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDA  845 (1134)
Q Consensus       771 ~~~~~~~~i~~l~~spdg-----~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~  845 (1134)
                         +....+..+.|..+.     ..++.-+.||                ..           .+|......-+    ...
T Consensus       375 ---~~iel~~pf~f~~~~~~v~k~~l~~LS~dg----------------~h-----------~sGs~~~~~~p----~p~  420 (1062)
T KOG1912|consen  375 ---SSIELVLPFDFNLSTKLVGKTSLISLSDDG----------------SH-----------SSGSTCVRMRP----MPE  420 (1062)
T ss_pred             ---ccccccccccccCceeehhhccccchhhcC----------------CC-----------CCCceeeeccc----Ccc
Confidence               011112222222211     1122223332                00           00100000000    000


Q ss_pred             eeEEEEcCCC-------CeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEe----------CCC
Q 001163          846 VPCFALSKND-------SYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGM----------EDS  907 (1134)
Q Consensus       846 v~~v~~s~dg-------~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~----------~dg  907 (1134)
                      ..-..-.|.|       .++|.|. .|+|.++|+.++...+.+..|...|.++.|.. ... |++.+          .-+
T Consensus       421 ~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g-~ss-lvSfsys~~n~~sg~vrN  498 (1062)
T KOG1912|consen  421 LTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLG-NSS-LVSFSYSHVNSASGGVRN  498 (1062)
T ss_pred             cceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecc-cee-EEEeeeccccccccceee
Confidence            0001111111       3677787 79999999999999999999999999999985 444 44332          224


Q ss_pred             cEEEEEcccceEE--EeccC-ccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEE
Q 001163          908 SIQIYNVRVDEVK--TKLKG-HQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQ  984 (1134)
Q Consensus       908 ~i~iwd~~~~~~~--~~l~~-h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~  984 (1134)
                      .+.|-|+.+|...  +-+++ ...+|+.+..|.-|++|+....|.-+.+||+++-..........+        .++.+.
T Consensus       499 ~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P--------~it~le  570 (1062)
T KOG1912|consen  499 DLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALP--------LITVLE  570 (1062)
T ss_pred             eEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCC--------cEEEEe
Confidence            6788899988533  32333 567899999999999999999999999999977443222111111        266777


Q ss_pred             Ec-CCCCE---------------EEEEeeceEEEEeCC-------Cccc-ceeeccCCCccCEEEEEEccCCCEEEEEec
Q 001163          985 FH-LDQTH---------------LLAVHETQIAIYEAP-------KLEC-LKQFVPREASGPITHATYSCDSQSIYVAFE 1040 (1134)
Q Consensus       985 fs-~dg~~---------------l~~~~d~~i~iwd~~-------~~~~-~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~ 1040 (1134)
                      |+ |.-..               +++......+++.+.       .+.. ...+.  .....+-.|+|  .+..|+.|..
T Consensus       571 Wsl~~~~si~qk~ls~q~sms~n~vv~ds~es~~~~~~~~a~~~sdgsq~~~a~e--sfafal~~mAw--k~d~lv~GD~  646 (1062)
T KOG1912|consen  571 WSLPKHPSIKQKELSKQSSMSENLVVLDSVESRIYHITLSALVVSDGSQVNTAWE--SFAFALCAMAW--KDDILVVGDV  646 (1062)
T ss_pred             ecccCCCCcccccchhhhhhhhceeeeccccchheehhhhhhhhccccchhhHHH--HHHHHHHhhhc--cCCeeEeecc
Confidence            76 32111               111111233333322       1111 00010  01122233455  4668999999


Q ss_pred             CCcEEEeecCCCcceeecCCC---------cccCCCCCCCceeEE--EEecCCCCCEEEE-EecCCcEEEEeCCCCCCCc
Q 001163         1041 EGSVGVLTASTLRLRCRINPT---------AYLPTNPSLRVYPLV--IAGNPTDPNQFAL-GLTDGGVYIIEPLEAEGRW 1108 (1134)
Q Consensus      1041 Dg~i~vwd~~~~~~~~~~~~~---------~~~~~~h~~~v~~~~--~~~~p~~~~~l~s-~~~Dg~v~vW~~~~~~~~~ 1108 (1134)
                      +|.+.+||+....-......+         ..+|..|..-|..+.  -.|......++.+ ++.|++.++-|+...+.+-
T Consensus       647 ~GNl~~WDlg~R~SRg~~d~p~~ra~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~siag~dssfrlldvdlc~~~~  726 (1062)
T KOG1912|consen  647 EGNLVVWDLGRRQSRGVRDSPDPRAHSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSIAGMDSSFRLLDVDLCEKSP  726 (1062)
T ss_pred             cCceeEEecccccccCccCCCCchhhheecccCCCCceEEEEecCcceecccccceeeeeeccCCcceEEEEEEecccCc
Confidence            999999996543221111100         122322422222220  0111112233333 5889999999988766654


Q ss_pred             cCCCC
Q 001163         1109 GTSPP 1113 (1134)
Q Consensus      1109 ~~~~~ 1113 (1134)
                      .+-|+
T Consensus       727 ~~l~~  731 (1062)
T KOG1912|consen  727 LVLPN  731 (1062)
T ss_pred             eecCC
Confidence            44444

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.78  E-value=2.2e-17  Score=166.85  Aligned_cols=245  Identities=14%  Similarity=0.181  Sum_probs=185.0

Q ss_pred             CCCEEEEE---eCCCEEEEEEc-cCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC-------
Q 001163          429 DGTLFGVA---YSKHIVHLYTY-HGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-------  497 (1134)
Q Consensus       429 d~~~las~---s~dg~v~iwd~-~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-------  497 (1134)
                      +.++||..   +..|...+--+ ++|+.-.....+.||+++|..++|+|-+.+ .|+|||.|.+|.||++..+       
T Consensus        43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~-vIASgSeD~~v~vW~IPe~~l~~~lt  121 (472)
T KOG0303|consen   43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDC-VIASGSEDTKVMVWQIPENGLTRDLT  121 (472)
T ss_pred             CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCc-eeecCCCCceEEEEECCCcccccCcc
Confidence            45666653   22233333222 234333333357799999999999998776 7999999999999998765       


Q ss_pred             ceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCe
Q 001163          498 TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGES  577 (1134)
Q Consensus       498 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~  577 (1134)
                      +.+..+.||...|.-+.|+|... +.|++++.|.+|.+||+.+++....+. |...|.++.|+.||.++++.+.|+    
T Consensus       122 epvv~L~gH~rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDK----  195 (472)
T KOG0303|consen  122 EPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDK----  195 (472)
T ss_pred             cceEEEeecceeEEEEeecccch-hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccc----
Confidence            34667889999999999999776 789999999999999999999888887 888999999999999999998755    


Q ss_pred             EEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe----CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCC
Q 001163          578 YLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG----DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE  653 (1134)
Q Consensus       578 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~  653 (1134)
                      .|++||.++++.+..-.+|.+.....+.|-.++. +++.+    .+..+-+||..+-+.-..+..-.....|.---|.+|
T Consensus       196 kvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~d  274 (472)
T KOG0303|consen  196 KVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPD  274 (472)
T ss_pred             eeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCC
Confidence            5999999999999988888776666777888888 55544    578899999876543222221122334545556777


Q ss_pred             CcEEEE-EECCCcEEEEEccCCceeEEEe
Q 001163          654 GILLAV-STNDNGIKILANADGIRLLRTV  681 (1134)
Q Consensus       654 ~~~l~~-~~~dg~i~iw~~~~~~~~~~~~  681 (1134)
                      ..+++. |-.|+.||-|.+.+....+.-+
T Consensus       275 t~ivYl~GKGD~~IRYyEit~d~P~~hyl  303 (472)
T KOG0303|consen  275 TSIVYLCGKGDSSIRYFEITNEPPFVHYL  303 (472)
T ss_pred             CCEEEEEecCCcceEEEEecCCCceeEEe
Confidence            776654 5569999999998875444433

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.77  E-value=1.9e-16  Score=165.78  Aligned_cols=494  Identities=12%  Similarity=0.125  Sum_probs=294.1

Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEE------ecCCCceEEEEEeCCCeE
Q 001163          416 DYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAF------SYPNKQLSVVTCGEDRVI  489 (1134)
Q Consensus       416 ~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~------s~~~~~~~l~s~s~d~~i  489 (1134)
                      .|...|.|+.|+.+...+.+++++..+.-||+.+... ..   +.-...-|....+      -..+..-.++.++.||.+
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~---~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf   87 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EV---AKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF   87 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhh-hh---hhCCcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence            5777888999999888888776666666666654332 11   1101111111000      001111168888999999


Q ss_pred             EEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEE
Q 001163          490 KVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSC  569 (1134)
Q Consensus       490 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  569 (1134)
                      .|.+ +.++.-..+..|.+.+.+-.|++++  .-|+++++||.|++|.-. +-.+..+......|+|++|.|+.+.++.+
T Consensus        88 ~il~-k~~rVE~sv~AH~~A~~~gRW~~dG--tgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c  163 (737)
T KOG1524|consen   88 VILN-KSARVERSISAHAAAISSGRWSPDG--AGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFC  163 (737)
T ss_pred             EEec-ccchhhhhhhhhhhhhhhcccCCCC--ceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEe
Confidence            9998 7888888899999999999996655  669999999999999743 33344444556689999999999888877


Q ss_pred             ecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEE
Q 001163          570 GTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIR  649 (1134)
Q Consensus       570 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  649 (1134)
                      ..+     .+.+-.+.....+-.++.|.+ -|.++.|++..+.+++||+|-..+|||... ..+..-..|  ..+|++++
T Consensus       164 ~g~-----h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S~~~--ey~ITSva  234 (737)
T KOG1524|consen  164 QGG-----HISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTSAAE--EYAITSVA  234 (737)
T ss_pred             cCC-----eEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeecccC-cccccCChh--ccceeeee
Confidence            532     377777777777778888887 899999999999999999999999999754 444444444  56899999


Q ss_pred             EcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCC
Q 001163          650 FNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGM  729 (1134)
Q Consensus       650 ~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  729 (1134)
                      |+|+ ..++.++.. ++|+   +.                                                        
T Consensus       235 ~npd-~~~~v~S~n-t~R~---~~--------------------------------------------------------  253 (737)
T KOG1524|consen  235 FNPE-KDYLLWSYN-TARF---SS--------------------------------------------------------  253 (737)
T ss_pred             eccc-cceeeeeee-eeee---cC--------------------------------------------------------
Confidence            9999 555555532 3331   00                                                        


Q ss_pred             CCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEee-ecCCC
Q 001163          730 SNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLW-KWPRN  808 (1134)
Q Consensus       730 ~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw-~~~~~  808 (1134)
                                                                  ...+.|..++||+||..++.|+..|.+.+= -++..
T Consensus       254 --------------------------------------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~  289 (737)
T KOG1524|consen  254 --------------------------------------------PRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQ  289 (737)
T ss_pred             --------------------------------------------CCccceEEEEEcCCCceeeccccCceEEEeeeehhh
Confidence                                                        134678899999999999999998877652 22221


Q ss_pred             CCCcccccc--cCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCC
Q 001163          809 ERNSTGKAT--TNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPA  886 (1134)
Q Consensus       809 ~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~  886 (1134)
                      -..-+.+.+  ....+.+-|+.++..-..+     ....|...+  -.-.+|+++....+++|.-........+.+....
T Consensus       290 l~~~n~~~t~~~r~~I~vrdV~~~v~d~LE-----~p~rv~k~s--L~Y~hLvvaTs~qvyiys~knwntpiiidgre~t  362 (737)
T KOG1524|consen  290 LVSGNLKATSKSRKSITVRDVATGVQDILE-----FPQRVVKFS--LGYGHLVVATSLQVYIYSEKNWNTPIIIDGREDT  362 (737)
T ss_pred             hhhccceeEeeccceEEeehhhhhHHHHhh-----Cccceeeee--eceeEEEEEeccEEEEEecCCccCcEEEeccccc
Confidence            111111111  1123444566655543322     233444444  3445777777888999987776666666555444


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEecc--Ccc-CceEEEEEeeCCCEEEE--EeCCCcEEEEEC-CCCc
Q 001163          887 ATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK--GHQ-KRITGLAFSNTLNVLVS--SGADSQLCVWST-DGWE  960 (1134)
Q Consensus       887 v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~--~h~-~~V~~l~~s~d~~~l~s--~s~Dg~i~iwd~-~~~~  960 (1134)
                      +.-+.-+.  ..+++  ...-+|.+|... |+.....+  +.. ...+.=..|-....|+.  ..+...+.+||. .+++
T Consensus       363 r~lieq~e--k~fli--~dgsSi~lytye-gR~~~np~~Pg~~~dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk  437 (737)
T KOG1524|consen  363 RNLIEQGE--KYFLI--LDGSSIWLYTYE-GRLHLNPRYPGSQIDLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGK  437 (737)
T ss_pred             hhHhhhhh--hheEE--ecCcEEEEEEec-CceecCCCCCCcccccccceeeecccceEEeecCCCCeeEEeccCCCCCc
Confidence            43333322  12222  223356666644 33322221  111 11111112222233443  233345778887 5655


Q ss_pred             cccc-eeeeecCCCCCCCCCceEEEEc----CCCCEEEE-EeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCE
Q 001163          961 KQAS-KFLTIPNGRTASALADTRVQFH----LDQTHLLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQS 1034 (1134)
Q Consensus       961 ~~~~-~~~~~~~~~~~~~~~v~~l~fs----~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~ 1034 (1134)
                      .+.- ..+..       ...+..++..    ++.+.++. -.++.+.|=.+++......+.  .-..-|..++|+ |-.-
T Consensus       438 ~qgDgk~L~h-------k~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~--KiGTmVhtLawn-dttN  507 (737)
T KOG1524|consen  438 RQGDGKSLRH-------KQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIY--KIGTMVHTLAWN-DTTN  507 (737)
T ss_pred             ccCCccccch-------hhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhh--hhhhhhhhhhhc-cccc
Confidence            3321 10110       0112222221    22222222 344555555554433222222  124567788887 4455


Q ss_pred             EEEEecCCcEEEeecCCCc
Q 001163         1035 IYVAFEEGSVGVLTASTLR 1053 (1134)
Q Consensus      1035 l~s~s~Dg~i~vwd~~~~~ 1053 (1134)
                      +++|-.|+.+.||-+.+.-
T Consensus       508 iLcglqDt~fsVWy~pn~v  526 (737)
T KOG1524|consen  508 ILCGLQDTCFSVWYYPNEV  526 (737)
T ss_pred             eeeeeccceEEEEEcCCcc
Confidence            6778899999999987643

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=9.9e-17  Score=168.35  Aligned_cols=241  Identities=15%  Similarity=0.194  Sum_probs=163.2

Q ss_pred             ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEE
Q 001163          413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW  492 (1134)
Q Consensus       413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  492 (1134)
                      .+.||++.|+|++|+.||.+|++||.|-.+.|||.-..+.+..+  -.||.+.|.++.|-|......++||..|..|+++
T Consensus        45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI--~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI--STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee--ecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            37899999999999999999999999999999999876655432  3589999999999997666589999999999999


Q ss_pred             ECCC----------CceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCce-ee---------ecCCCC
Q 001163          493 DAVT----------GTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR-VD---------YDAPGH  552 (1134)
Q Consensus       493 d~~~----------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-~~---------~~~~~~  552 (1134)
                      |+..          .+..+.+..|...|..|+..+... +.+.++++||+|+-+|++....- ..         +...--
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P-htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li  201 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP-HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI  201 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhheecCCCCC-ceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence            9884          234456677999998888755433 78999999999999999863211 11         111112


Q ss_pred             CeeEEEECcCCCE-EEEEecCCCCCeEEEEEeCCCCeeEEEecCCCC------CceEEE-EEcCCCCEEEEEeCCCeEEE
Q 001163          553 SSTMMAYSADGAR-LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK------RSVGVV-QFDTTKNRFLAAGDEFMIKF  624 (1134)
Q Consensus       553 ~v~~~~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~~~-~~~~~~~~l~~~~~dg~i~i  624 (1134)
                      ...++.++|...+ |++|+.    +...++||.+...  ..+.....      ....++ -|+|.+-    ...+|.+  
T Consensus       202 elk~ltisp~rp~~laVGgs----dpfarLYD~Rr~l--ks~~s~~~~~~~pp~~~~cv~yf~p~hl----kn~~gn~--  269 (758)
T KOG1310|consen  202 ELKCLTISPSRPYYLAVGGS----DPFARLYDRRRVL--KSFRSDGTMNTCPPKDCRCVRYFSPGHL----KNSQGNL--  269 (758)
T ss_pred             eeeeeeecCCCCceEEecCC----Cchhhhhhhhhhc--cCCCCCccccCCCCcccchhheecCccc----cCccccc--
Confidence            5678899997654 555543    4578999963221  11111100      011111 1223221    1111111  


Q ss_pred             EEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEec
Q 001163          625 WDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVE  682 (1134)
Q Consensus       625 wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  682 (1134)
                              ...      ...++-++|+|+|.-|++.-....|+++++..++.....+.
T Consensus       270 --------~~~------~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~~  313 (758)
T KOG1310|consen  270 --------DRY------ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYFL  313 (758)
T ss_pred             --------ccc------eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeecC
Confidence                    000      11246789999997777766667999999988855554443

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=9.8e-17  Score=161.20  Aligned_cols=297  Identities=11%  Similarity=0.142  Sum_probs=211.8

Q ss_pred             EeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCC
Q 001163          352 TLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT  431 (1134)
Q Consensus       352 ~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~  431 (1134)
                      .++|.+.|+++.||.+++ +||+|+.|..+++|+++..-....           .++++. .-..|...|.|++|....+
T Consensus        52 ~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~-----------~KPI~~-~~~~H~SNIF~L~F~~~N~  118 (609)
T KOG4227|consen   52 VREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKT-----------PKPIGV-MEHPHRSNIFSLEFDLENR  118 (609)
T ss_pred             hhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcC-----------CCCcee-ccCccccceEEEEEccCCe
Confidence            356999999999999988 569999999999999864322111           011111 1245778999999999999


Q ss_pred             EEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCc-e--eEEecCCCc
Q 001163          432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-K--QYIFEGHES  508 (1134)
Q Consensus       432 ~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~-~--~~~~~~h~~  508 (1134)
                      +|.+|+.+++|...|+++.+.+... .-....+.|..+.-+|-.+  .|++.+.++.|.+||.+... .  +..+.....
T Consensus       119 ~~~SG~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~  195 (609)
T KOG4227|consen  119 FLYSGERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGK  195 (609)
T ss_pred             eEecCCCcceeEeeecccceeeeee-cccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeecCCCc
Confidence            9999999999999999998766521 1122334899999999977  79999999999999987654 2  222333445


Q ss_pred             CEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeee-------cCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEE
Q 001163          509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY-------DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE  581 (1134)
Q Consensus       509 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~  581 (1134)
                      ....+.|+|... .+|++.+..+-+.+||.+........       ......-.+..|+|+|..+++.-...    .-.+
T Consensus       196 ~F~t~~F~P~~P-~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~----~P~~  270 (609)
T KOG4227|consen  196 NFYTAEFHPETP-ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGK----CPLY  270 (609)
T ss_pred             cceeeeecCCCc-eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccC----CCEE
Confidence            566777877654 68889999999999998765433221       11112235678999999988764322    3557


Q ss_pred             EeCCCCe-eEEEecCCCC-----CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-----------------------ce
Q 001163          582 WNESEGA-VKRTYHGLGK-----RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV-----------------------NL  632 (1134)
Q Consensus       582 wd~~~~~-~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----------------------~~  632 (1134)
                      ||+-+.+ .+..+.....     ..+.+++|..|. .+++|+.+-.|++|.+...                       +.
T Consensus       271 ~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~  349 (609)
T KOG4227|consen  271 FDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKE  349 (609)
T ss_pred             eeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecce
Confidence            7877644 3333432221     135567777654 5899999999999987421                       12


Q ss_pred             eEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEcc
Q 001163          633 LASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA  672 (1134)
Q Consensus       633 ~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~  672 (1134)
                      +..+.  +|...++.+.|+|...+|++.+-.+.++||.-.
T Consensus       350 ~~VLr--GHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  350 LTVLR--GHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             eEEEe--cccccccceeecCCcceEeccchhhheeccccc
Confidence            23444  447788999999999999999999999999754

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=6.1e-18  Score=175.47  Aligned_cols=297  Identities=19%  Similarity=0.264  Sum_probs=230.4

Q ss_pred             EEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC
Q 001163          350 VMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP  428 (1134)
Q Consensus       350 ~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  428 (1134)
                      ...|. |.+.|..|.|...|. ++++|+.|..|.+||+..++....                  +..||...|..-.|-|
T Consensus       135 ~~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFiP  195 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFIP  195 (559)
T ss_pred             hhcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhccC
Confidence            34454 999999999999999 679999999999999998876543                  3578999999999998


Q ss_pred             --CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEe---
Q 001163          429 --DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF---  503 (1134)
Q Consensus       429 --d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~---  503 (1134)
                        +..-+++++.||.|++=.+...........+..|.++|.-++.-|+... -|.|++.|+.+.-.|++++.....+   
T Consensus       196 ~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr  274 (559)
T KOG1334|consen  196 FSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCR  274 (559)
T ss_pred             CCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeee
Confidence              5678999999999999887655545445568889999999999999887 7999999999999999887654333   


Q ss_pred             cCCCc---CEEEEeccccCCccEEEEecCCCcEEEEecCCCCce------eeec------CCCCCeeEEEECcCCCEEEE
Q 001163          504 EGHES---PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR------VDYD------APGHSSTMMAYSADGARLFS  568 (1134)
Q Consensus       504 ~~h~~---~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~------~~~~------~~~~~v~~~~~s~~~~~l~~  568 (1134)
                      ..+..   ....++.+|... ..+++++.|..+++||.+.....      ..+.      .....|++++|+.++.-|++
T Consensus       275 ~~~~~~~v~L~~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLa  353 (559)
T KOG1334|consen  275 EADEKERVGLYTIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLA  353 (559)
T ss_pred             ccCCccceeeeeEecCCCCc-cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceee
Confidence            22333   466777776543 58999999999999997643322      1111      12237899999977766665


Q ss_pred             EecCCCCCeEEEEEeCCC--C----------eeEE-EecCCCCC-ceEEE-EEcCCCCEEEEEeCCCeEEEEEcCCCcee
Q 001163          569 CGTNKEGESYLVEWNESE--G----------AVKR-TYHGLGKR-SVGVV-QFDTTKNRFLAAGDEFMIKFWDMDNVNLL  633 (1134)
Q Consensus       569 ~~~~~~~~~~i~~wd~~~--~----------~~~~-~~~~~~~~-~v~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  633 (1134)
                      ...+.    .|+++....  |          ..+. .|++|.+. .|..+ .|.|...++++|++-|.|.||+-.+++.+
T Consensus       354 SYnDe----~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii  429 (559)
T KOG1334|consen  354 SYNDE----DIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEII  429 (559)
T ss_pred             eeccc----ceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHH
Confidence            55433    388875432  2          2233 37888653 34445 46788899999999999999999999999


Q ss_pred             EEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccC
Q 001163          634 ASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD  673 (1134)
Q Consensus       634 ~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~  673 (1134)
                      ..+.+..+  .|+|+.-+|--..||+.+-|..|+||...+
T Consensus       430 ~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~  467 (559)
T KOG1334|consen  430 RFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLT  467 (559)
T ss_pred             HHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCc
Confidence            99987755  899999999999999999999999998643

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=7.8e-16  Score=145.50  Aligned_cols=280  Identities=17%  Similarity=0.224  Sum_probs=189.1

Q ss_pred             eeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeC
Q 001163          359 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS  438 (1134)
Q Consensus       359 V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~  438 (1134)
                      |.+-++||.+++ ++.|..+|.|.+..+..-..-..+       .....+..  ...+|.++|+.++|.  ..+|++|+.
T Consensus        13 vf~qa~sp~~~~-l~agn~~G~iav~sl~sl~s~sa~-------~~gk~~iv--~eqahdgpiy~~~f~--d~~Lls~gd   80 (325)
T KOG0649|consen   13 VFAQAISPSKQY-LFAGNLFGDIAVLSLKSLDSGSAE-------PPGKLKIV--PEQAHDGPIYYLAFH--DDFLLSGGD   80 (325)
T ss_pred             HHHHhhCCcceE-EEEecCCCeEEEEEehhhhccccC-------CCCCccee--eccccCCCeeeeeee--hhheeeccC
Confidence            445678899985 689999999999998642211100       00000011  147899999999998  557777754


Q ss_pred             CCEEEEEEccCCcee---eeee--eeecCC-----CCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCc
Q 001163          439 KHIVHLYTYHGGDEL---RNHL--EIEAHV-----GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES  508 (1134)
Q Consensus       439 dg~v~iwd~~~~~~~---~~~~--~l~~h~-----~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~  508 (1134)
                       |.|+-|..+....-   +...  ....|.     -.|+++-..|..+  -+++++.|+.++-||+++|+..++++||++
T Consensus        81 -G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHtD  157 (325)
T KOG0649|consen   81 -GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHTD  157 (325)
T ss_pred             -ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCcc
Confidence             99999987643321   1000  012233     2488999998777  477777999999999999999999999999


Q ss_pred             CEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCC----------CeeEEEECcCCCEEEEEecCCCCCeE
Q 001163          509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH----------SSTMMAYSADGARLFSCGTNKEGESY  578 (1134)
Q Consensus       509 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~----------~v~~~~~s~~~~~l~~~~~~~~~~~~  578 (1134)
                      .|.++.-....  ..+++|++||++|+||.++.+....+....+          .|  .+..-+..++++++..     .
T Consensus       158 YvH~vv~R~~~--~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi--gala~~edWlvCGgGp-----~  228 (325)
T KOG0649|consen  158 YVHSVVGRNAN--GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGGGP-----K  228 (325)
T ss_pred             eeeeeeecccC--cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCcee--EEEeccCceEEecCCC-----c
Confidence            99999853322  5799999999999999999887776543222          23  3444566788887643     4


Q ss_pred             EEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCC-cEE
Q 001163          579 LVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG-ILL  657 (1134)
Q Consensus       579 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~-~~l  657 (1134)
                      +.+|.++..++...|.-..  .+..+.|.  ...++++++.+.|.-|.+. |.+...++..  .....+..|+... +++
T Consensus       229 lslwhLrsse~t~vfpipa--~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~--s~~c~s~s~~~~p~k~~  301 (325)
T KOG0649|consen  229 LSLWHLRSSESTCVFPIPA--RVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIPVE--STACYSASWQTSPIKFI  301 (325)
T ss_pred             eeEEeccCCCceEEEeccc--ceeEeeee--cceEEEeccccceeeeeec-cEEEEeccCC--ccceeeecccCCceEEE
Confidence            9999999998888776543  56667775  4578888888899999874 4443333332  2234455554433 344


Q ss_pred             EEEECCCcEEEE
Q 001163          658 AVSTNDNGIKIL  669 (1134)
Q Consensus       658 ~~~~~dg~i~iw  669 (1134)
                      -.++....+.|+
T Consensus       302 s~ag~s~~~~i~  313 (325)
T KOG0649|consen  302 SIAGFSNKLHIL  313 (325)
T ss_pred             Eecccceeeeee
Confidence            445555555554

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.75  E-value=9.7e-16  Score=160.58  Aligned_cols=210  Identities=15%  Similarity=0.190  Sum_probs=163.1

Q ss_pred             CCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcC
Q 001163          430 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESP  509 (1134)
Q Consensus       430 ~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~  509 (1134)
                      ...++.++.||.+.|-+-.. +.-   .....|.+.|.+-.|+|||.  -|+|++.||.|++|. ++|-...++.....+
T Consensus        75 ~d~~~i~s~DGkf~il~k~~-rVE---~sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~  147 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNKSA-RVE---RSISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEES  147 (737)
T ss_pred             cceEEEEcCCceEEEecccc-hhh---hhhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCce
Confidence            35788889999988887443 322   25789999999999999999  799999999999999 788777777778889


Q ss_pred             EEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCee
Q 001163          510 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV  589 (1134)
Q Consensus       510 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~  589 (1134)
                      |.|++|.|+.+ ..+++.+  +.+.+=.+...........|.+-|.++.|++....+++++.    +...++||.. |..
T Consensus       148 v~c~~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~  219 (737)
T KOG1524|consen  148 IRCARWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GAN  219 (737)
T ss_pred             eEEEEECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-Ccc
Confidence            99999988765 4555554  55666666666777788899999999999999999999986    4569999965 555


Q ss_pred             EEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEE
Q 001163          590 KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKIL  669 (1134)
Q Consensus       590 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw  669 (1134)
                      +..-..|.- +|++++|.|+ ..++.++. .+++            +.. ...+.|..++|++||..+++|+..|.+.+=
T Consensus       220 Lf~S~~~ey-~ITSva~npd-~~~~v~S~-nt~R------------~~~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  220 LFTSAAEEY-AITSVAFNPE-KDYLLWSY-NTAR------------FSS-PRVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             cccCChhcc-ceeeeeeccc-cceeeeee-eeee------------ecC-CCccceEEEEEcCCCceeeccccCceEEEe
Confidence            555555554 8999999999 55555553 3344            111 225578899999999999999999987653


Q ss_pred             E
Q 001163          670 A  670 (1134)
Q Consensus       670 ~  670 (1134)
                      .
T Consensus       284 ~  284 (737)
T KOG1524|consen  284 Y  284 (737)
T ss_pred             e
Confidence            3

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=9e-17  Score=159.87  Aligned_cols=275  Identities=14%  Similarity=0.155  Sum_probs=194.6

Q ss_pred             EEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC--CCCEEEEEeCCCEEEEEEcc
Q 001163          371 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGTLFGVAYSKHIVHLYTYH  448 (1134)
Q Consensus       371 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~~~las~s~dg~v~iwd~~  448 (1134)
                      .+|++...|.|+|||..+++.+..                   +.+|...++.++|..  ....+.+|+.||+|++||++
T Consensus        42 ~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R  102 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR  102 (376)
T ss_pred             eEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence            678999999999999999887764                   678999999999988  56789999999999999999


Q ss_pred             CCceeeeeeeeecCC-CCEEEEEEecCCCceEEEEEe----CCCeEEEEECCCCce-eEEe-cCCCcCEEEEeccccCCc
Q 001163          449 GGDELRNHLEIEAHV-GSVNDLAFSYPNKQLSVVTCG----EDRVIKVWDAVTGTK-QYIF-EGHESPVYSICPHHKENI  521 (1134)
Q Consensus       449 ~~~~~~~~~~l~~h~-~~V~~v~~s~~~~~~~l~s~s----~d~~i~iwd~~~~~~-~~~~-~~h~~~v~~~~~~~~~~~  521 (1134)
                      +....... ...+|. .+..|++..-.++  .+++|.    .|-.|.+||++..+. +..+ ..|...|++++|+|+.. 
T Consensus       103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p-  178 (376)
T KOG1188|consen  103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP-  178 (376)
T ss_pred             cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC-
Confidence            87765433 355666 5677777665555  566664    366899999998776 5544 56999999999998765 


Q ss_pred             cEEEEecCCCcEEEEecCCCCcee---eecCCCCCeeEEEECcCC-CEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCC
Q 001163          522 QFIFSTATDGKIKAWLYDNLGSRV---DYDAPGHSSTMMAYSADG-ARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG  597 (1134)
Q Consensus       522 ~~l~s~s~dg~i~vwd~~~~~~~~---~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~  597 (1134)
                      ++|++||.||.|.++|+......-   ...-+...|..+.|..++ +.+.+.+...    ...+|+++.+.....+....
T Consensus       179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~E----tf~~~ele~~~~~~~~~~~~  254 (376)
T KOG1188|consen  179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHME----TFAIYELEDGSEETWLENPD  254 (376)
T ss_pred             CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccC----ceeEEEccCCChhhcccCcc
Confidence            799999999999999987653322   223345578999998877 3455554432    48999999887655443321


Q ss_pred             CC--------ce-EEE-EEcC-CCCEEEEEe-CCCeEEEEEcC---CCc---eeEEEecCCCCCCcceEEEcCCCcEEEE
Q 001163          598 KR--------SV-GVV-QFDT-TKNRFLAAG-DEFMIKFWDMD---NVN---LLASIDADGGLQASPCIRFNKEGILLAV  659 (1134)
Q Consensus       598 ~~--------~v-~~~-~~~~-~~~~l~~~~-~dg~i~iwd~~---~~~---~~~~~~~~~~~~~v~~v~~sp~~~~l~~  659 (1134)
                      -.        .+ +-+ +.+| +...++.++ .-+...++-+.   ++.   .+..+.+ ++...|.++.|...+.++.+
T Consensus       255 ~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~T  333 (376)
T KOG1188|consen  255 VSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLYT  333 (376)
T ss_pred             chhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceeec
Confidence            10        00 001 1223 334444444 35555555433   333   3333333 35667889999999999999


Q ss_pred             EECCCcEEEEEccC
Q 001163          660 STNDNGIKILANAD  673 (1134)
Q Consensus       660 ~~~dg~i~iw~~~~  673 (1134)
                      |+.||.+.+|...+
T Consensus       334 GGEDG~l~~Wk~~d  347 (376)
T KOG1188|consen  334 GGEDGLLQAWKVED  347 (376)
T ss_pred             cCCCceEEEEecCC
Confidence            99999999998643

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=2.3e-17  Score=174.81  Aligned_cols=250  Identities=14%  Similarity=0.208  Sum_probs=188.9

Q ss_pred             cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEcc-----CCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCe
Q 001163          414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYH-----GGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV  488 (1134)
Q Consensus       414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~-----~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~  488 (1134)
                      +..|.+.|..++|.|-...|++++.||++++|+++     ....+.+..++.+|.++|.|++..+++.  .+++|+.||+
T Consensus       290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg~  367 (577)
T KOG0642|consen  290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDGT  367 (577)
T ss_pred             eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCce
Confidence            56799999999999999999999999999999993     2334667778999999999999999999  7999999999


Q ss_pred             EEEEECCCC----------ceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCC--CCeeE
Q 001163          489 IKVWDAVTG----------TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG--HSSTM  556 (1134)
Q Consensus       489 i~iwd~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--~~v~~  556 (1134)
                      |+.|++...          .....+.||.+.|+.++++...  ..|++++.||+++.|+...... ..+....  +.-.+
T Consensus       368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls  444 (577)
T KOG0642|consen  368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS  444 (577)
T ss_pred             eeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence            999965411          2335678999999999998777  5699999999999998765444 2222221  12234


Q ss_pred             EEECcCC-CEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCC------CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 001163          557 MAYSADG-ARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG------KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN  629 (1134)
Q Consensus       557 ~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  629 (1134)
                      +.+.... ...++...    ...-.+++...+..+..+....      ...+..+...|.+.+.+++.+|+.|+++|..+
T Consensus       445 vd~~ss~~a~~~~s~~----~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~  520 (577)
T KOG0642|consen  445 VDRTSSRPAHSLASFR----FGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT  520 (577)
T ss_pred             EeeccchhHhhhhhcc----cccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc
Confidence            4443222 11222111    1112234444444444433221      12456688899999999999999999999999


Q ss_pred             CceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163          630 VNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       630 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      ++++.....|  ...++++++.|+|.+|++++.|+.+++|.+...
T Consensus       521 ~~~l~s~~a~--~~svtslai~~ng~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  521 GKILHSMVAH--KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             cccchheeec--cceecceeecCCCceEEeecCCceeehhhccch
Confidence            9999988866  778999999999999999999999999998654

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.74  E-value=6.3e-16  Score=150.12  Aligned_cols=291  Identities=15%  Similarity=0.275  Sum_probs=209.5

Q ss_pred             eeEEEeecCCCeeEEEEc--CCCCeEEEEEeCC----CcEEEEecC--CccceeeeceeeeeccccCccccccccccCCC
Q 001163          348 TVVMTLNQGSAVKSMDFH--PVQQILLVVGTNM----GDVMLWEVG--SRERIAVKSFKVWELGACSMPLQASLSSDYTA  419 (1134)
Q Consensus       348 ~~~~~~~h~~~V~~v~fs--p~g~~lla~gs~d----g~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  419 (1134)
                      +.+..+...-.+.++.||  |+.+..+|.|+..    ..|.|-.+.  +++.+..                  --..|.-
T Consensus        36 ~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~------------------a~fd~~Y   97 (364)
T KOG0290|consen   36 KEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVED------------------ANFDHPY   97 (364)
T ss_pred             ceEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceecc------------------CCCCCCC
Confidence            335667777889999999  5666678888742    445554433  3333321                  1246999


Q ss_pred             CEEEEEEcCCC-----CEEEEEeCCCEEEEEEccCCc-eeeeeeee-----ecCCCCEEEEEEecCCCceEEEEEeCCCe
Q 001163          420 SVNRVMWSPDG-----TLFGVAYSKHIVHLYTYHGGD-ELRNHLEI-----EAHVGSVNDLAFSYPNKQLSVVTCGEDRV  488 (1134)
Q Consensus       420 ~V~~l~~spd~-----~~las~s~dg~v~iwd~~~~~-~~~~~~~l-----~~h~~~V~~v~~s~~~~~~~l~s~s~d~~  488 (1134)
                      +++.+.|.|+.     ++||+.+.  .+++|.+...+ .+.....+     ..+.+++++..|+.-..+ ++.++|-|-+
T Consensus        98 P~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTT  174 (364)
T KOG0290|consen   98 PVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTT  174 (364)
T ss_pred             CccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCe
Confidence            99999999976     36666543  59999987421 12211122     246678999999986665 7999999999


Q ss_pred             EEEEECCCCce---eEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceee-ecCC--CCCeeEEEECcC
Q 001163          489 IKVWDAVTGTK---QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD-YDAP--GHSSTMMAYSAD  562 (1134)
Q Consensus       489 i~iwd~~~~~~---~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~--~~~v~~~~~s~~  562 (1134)
                      ..|||+++|..   ...+-+|..+|..++|.. +..+.+++.+.||.||+||++..+.-.. ++..  ..+...++|++.
T Consensus       175 CTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkq  253 (364)
T KOG0290|consen  175 CTIWDIETGVSGTVKTQLIAHDKEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQ  253 (364)
T ss_pred             EEEEEEeeccccceeeEEEecCcceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcC
Confidence            99999998733   456778999999999976 4447999999999999999997665433 3333  346778888874


Q ss_pred             -CCEEEEEecCCCCCeEEEEEeCCCC-eeEEEecCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCce------e
Q 001163          563 -GARLFSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNL------L  633 (1134)
Q Consensus       563 -~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~------~  633 (1134)
                       -+++++...+.   ..|.+.|++.. .++..+.+|.. .|+.++|.|.. ..++++|+|..+.+||+...-.      +
T Consensus       254 DpnymATf~~dS---~~V~iLDiR~P~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPi  329 (364)
T KOG0290|consen  254 DPNYMATFAMDS---NKVVILDIRVPCTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPI  329 (364)
T ss_pred             CchHHhhhhcCC---ceEEEEEecCCCcceehhhcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCch
Confidence             46777776543   35899999875 67788899987 99999999976 6888999999999999975322      2


Q ss_pred             EEEecCCCCCCcceEEEcC-CCcEEEEEECCCcEEE
Q 001163          634 ASIDADGGLQASPCIRFNK-EGILLAVSTNDNGIKI  668 (1134)
Q Consensus       634 ~~~~~~~~~~~v~~v~~sp-~~~~l~~~~~dg~i~i  668 (1134)
                      ..+.   ....|+.+.|++ .+.+++.+... .+.+
T Consensus       330 lay~---a~~EVNqi~Ws~~~~Dwiai~~~k-klei  361 (364)
T KOG0290|consen  330 LAYT---AGGEVNQIQWSSSQPDWIAICFGK-KLEI  361 (364)
T ss_pred             hhhh---ccceeeeeeecccCCCEEEEEecC-eeeE
Confidence            2222   245799999997 56788776543 4433

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=1e-16  Score=159.52  Aligned_cols=293  Identities=13%  Similarity=0.155  Sum_probs=202.0

Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecC--CC-CCee
Q 001163          479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA--PG-HSST  555 (1134)
Q Consensus       479 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~-~~v~  555 (1134)
                      .++++-..|+|+++|..+++.+..|+++...++.+.|........+.+++.||+|++||++.......+..  +. .+..
T Consensus        42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~  121 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI  121 (376)
T ss_pred             eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence            68888889999999999999999999999999999987754557899999999999999998765544333  22 3566


Q ss_pred             EEEECcCCCEEEEEecCCCCCeEEEEEeCCCCee-EEEecCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCc--
Q 001163          556 MMAYSADGARLFSCGTNKEGESYLVEWNESEGAV-KRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVN--  631 (1134)
Q Consensus       556 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~--  631 (1134)
                      +++..-+++.++++..--..+..+.+||.+..+. ++.+...+...|+.++|+|.. +.|++|+.||.|.+||+....  
T Consensus       122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee  201 (376)
T KOG1188|consen  122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE  201 (376)
T ss_pred             EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence            6766667788888765555577899999998766 666654444499999999976 788999999999999987543  


Q ss_pred             --eeEEEecCCCCCCcceEEEcCCC-cEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhccccccccccc
Q 001163          632 --LLASIDADGGLQASPCIRFNKEG-ILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSA  708 (1134)
Q Consensus       632 --~~~~~~~~~~~~~v~~v~~sp~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  708 (1134)
                        ++.++.   +...|.++.|..++ +.|.+-+..++..+|+++.+.... .+..........                 
T Consensus       202 DaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~-~~~~~~~~~~d~-----------------  260 (376)
T KOG1188|consen  202 DALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEET-WLENPDVSADDL-----------------  260 (376)
T ss_pred             hhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhh-cccCccchhhhH-----------------
Confidence              223332   24468899999877 568888999999999999884221 111110000000                 


Q ss_pred             ccccccCcCCCCcccccccCCCCCCccCccccccccc-ccccccceeeecccCCccceeccccCCccccccEEEEEEecC
Q 001163          709 NANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIAD-EAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNS  787 (1134)
Q Consensus       709 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd  787 (1134)
                               .........    -+.....+....+.+ ..-+...++-+.................+|..-|+++.|...
T Consensus       261 ---------r~~~~~dY~----I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~  327 (376)
T KOG1188|consen  261 ---------RKEDNCDYV----INEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVK  327 (376)
T ss_pred             ---------Hhhhhhhhe----eecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcc
Confidence                     000000000    000111122333332 224566666665433333334444444557888899999999


Q ss_pred             CceeeeeccCCeEEeeec
Q 001163          788 GLAILALASNAVHKLWKW  805 (1134)
Q Consensus       788 g~~l~~~~~dg~i~vw~~  805 (1134)
                      +..+.+|+.||.+.+|..
T Consensus       328 ~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  328 NDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             cceeeccCCCceEEEEec
Confidence            999999999999999974

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.74  E-value=5.9e-16  Score=152.68  Aligned_cols=381  Identities=11%  Similarity=0.132  Sum_probs=236.5

Q ss_pred             EEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEE-eCC
Q 001163          361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA-YSK  439 (1134)
Q Consensus       361 ~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~-s~d  439 (1134)
                      -+.|||+|+|+ |+.+.- .+.|=|..+-+..+.                    .-.-+.|..+.|+.|.-+++.+ +.|
T Consensus        13 ~c~fSp~g~yi-As~~~y-rlviRd~~tlq~~ql--------------------f~cldki~yieW~ads~~ilC~~yk~   70 (447)
T KOG4497|consen   13 FCSFSPCGNYI-ASLSRY-RLVIRDSETLQLHQL--------------------FLCLDKIVYIEWKADSCHILCVAYKD   70 (447)
T ss_pred             ceeECCCCCee-eeeeee-EEEEeccchhhHHHH--------------------HHHHHHhhheeeeccceeeeeeeecc
Confidence            46899999965 665543 778888877655432                    1124578889999998877665 778


Q ss_pred             CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccC
Q 001163          440 HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKE  519 (1134)
Q Consensus       440 g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~  519 (1134)
                      +.|.+|++...+-..   .+....+++.++.|||||+. .|.+...|-.|.+|.+.+.+.... .-....+..++|+  +
T Consensus        71 ~~vqvwsl~Qpew~c---kIdeg~agls~~~WSPdgrh-iL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~--~  143 (447)
T KOG4497|consen   71 PKVQVWSLVQPEWYC---KIDEGQAGLSSISWSPDGRH-ILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFH--P  143 (447)
T ss_pred             ceEEEEEeecceeEE---EeccCCCcceeeeECCCcce-EeeeecceeEEEEEEeccceeEEe-cccccCceeEEEC--C
Confidence            899999998766444   46677888999999999986 678888899999999988776542 2234445777775  4


Q ss_pred             CccEEEEecCCCcEEEEecC---CCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCC
Q 001163          520 NIQFIFSTATDGKIKAWLYD---NLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL  596 (1134)
Q Consensus       520 ~~~~l~s~s~dg~i~vwd~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~  596 (1134)
                      +|++.+.++.-...-..++.   .-.....+....-..+.+.|+|||..|++-             |.--.-.+..+  +
T Consensus       144 dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVw-------------d~~Leykv~aY--e  208 (447)
T KOG4497|consen  144 DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVW-------------DNVLEYKVYAY--E  208 (447)
T ss_pred             CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEe-------------cchhhheeeee--e
Confidence            55788777653221111111   001112233344467789999999987764             32111111112  2


Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCc--------------------ceEEEcCCCcE
Q 001163          597 GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQAS--------------------PCIRFNKEGIL  656 (1134)
Q Consensus       597 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v--------------------~~v~~sp~~~~  656 (1134)
                      .+-.+..++|+|.+++++.|+.|+.++|.+--+-+++..+-.   ...+                    .|+.|.|..  
T Consensus       209 ~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflh---l~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~--  283 (447)
T KOG4497|consen  209 RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLH---LCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTD--  283 (447)
T ss_pred             eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhcc---chhccCchhhhhhhhhcchhhhcccccccCCCc--
Confidence            222677899999999999999999999977655444433211   1011                    112222110  


Q ss_pred             EEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccC
Q 001163          657 LAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNF  736 (1134)
Q Consensus       657 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  736 (1134)
                             -...+|.....                                                              
T Consensus       284 -------~~a~~~~~se~--------------------------------------------------------------  294 (447)
T KOG4497|consen  284 -------LEAHIWEESET--------------------------------------------------------------  294 (447)
T ss_pred             -------cccCccccchh--------------------------------------------------------------
Confidence                   00111111000                                                              


Q ss_pred             cccccccccccccccceeeecccCCccceecc----ccCCccccccEEEEEEecCCceeeeeccC--CeEEeeecCCCCC
Q 001163          737 TDVKPKIADEAVEKSRIWKLTEITEPSQCRSL----RLPDNLTAMRVSRLIYTNSGLAILALASN--AVHKLWKWPRNER  810 (1134)
Q Consensus       737 ~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~----~~~~~~~~~~i~~l~~spdg~~l~~~~~d--g~i~vw~~~~~~~  810 (1134)
                                      +|+...  .+.....+    ..+.  ..-.+.-++|++|..++++-.+.  ..+-+||+.    
T Consensus       295 ----------------~YE~~~--~pv~~~~lkp~tD~pn--Pk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq----  350 (447)
T KOG4497|consen  295 ----------------IYEQQM--TPVKVHKLKPPTDFPN--PKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQ----  350 (447)
T ss_pred             ----------------hhhhhh--cceeeecccCCCCCCC--cccccceeeecCCceEEeeecCCCCceEEEEech----
Confidence                            000000  00000000    0111  23456789999999998888775  455566544    


Q ss_pred             CcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEE
Q 001163          811 NSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATF  889 (1134)
Q Consensus       811 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~  889 (1134)
                                        .-++.....    ...+|++..|+|....|+.+. ...+++|.......+..-. ..-.|..
T Consensus       351 ------------------~l~l~avLi----Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~-~GF~i~~  407 (447)
T KOG4497|consen  351 ------------------NLKLHAVLI----QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK-KGFNIQK  407 (447)
T ss_pred             ------------------hhhhhhhhh----hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCC-CCceeee
Confidence                              444333322    468899999999998888887 5679999986655554433 4467999


Q ss_pred             EEEcCCCCcEEEEEeCCC
Q 001163          890 LAFHPQDNNIIAIGMEDS  907 (1134)
Q Consensus       890 l~~sp~~~~~la~g~~dg  907 (1134)
                      +.|.. +|..++..+.|.
T Consensus       408 l~W~~-~g~~i~l~~kDa  424 (447)
T KOG4497|consen  408 LQWLQ-PGEFIVLCGKDA  424 (447)
T ss_pred             EEecC-CCcEEEEEcCCc
Confidence            99998 788888888776

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.73  E-value=1.3e-17  Score=183.23  Aligned_cols=281  Identities=18%  Similarity=0.308  Sum_probs=215.9

Q ss_pred             EEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCC
Q 001163          351 MTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG  430 (1134)
Q Consensus       351 ~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~  430 (1134)
                      +.++|...|+|+.|...|+++ .+|+.|..|+||..+++.++..                   +.||++.|+.++.+.+.
T Consensus       185 rLlgH~naVyca~fDrtg~~I-itgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs~~n  244 (1113)
T KOG0644|consen  185 RLLGHRNAVYCAIFDRTGRYI-ITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVSSNN  244 (1113)
T ss_pred             HHHhhhhheeeeeeccccceE-eecCccceeeeeeccchhhhcc-------------------CCCCccccchhccchhh
Confidence            456799999999999999965 7999999999999999988775                   78999999999999999


Q ss_pred             CEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEE---ec-CC
Q 001163          431 TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI---FE-GH  506 (1134)
Q Consensus       431 ~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~---~~-~h  506 (1134)
                      .++|++|.|..|++|.+..+..+.   .+.||++.|++++|+|-      .+.+.||++++||.+-.-.++.   +. ..
T Consensus       245 ~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~~~  315 (1113)
T KOG0644|consen  245 TMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKFTE  315 (1113)
T ss_pred             hhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCccc
Confidence            999999999999999999998766   68999999999999985      4778999999999871111111   11 11


Q ss_pred             CcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCC
Q 001163          507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE  586 (1134)
Q Consensus       507 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~  586 (1134)
                      ..-+.++.|  ..++..+.+++.|+.-..|.+....      .+...+.-+..+.+-..+....   -.+..+.+|++.+
T Consensus       316 ~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~a---r~~~~~~vwnl~~  384 (1113)
T KOG0644|consen  316 KDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTA---RNDHRLCVWNLYT  384 (1113)
T ss_pred             ccceeeeec--cccccccccccCCcccccchhhHhh------hhccceEEEeccccccccceee---eeeeEeeeeeccc
Confidence            234455554  3455778999999998888654211      1111122222222322222222   1255688999999


Q ss_pred             CeeEEEecCCCCCceEEEEEcCCCCEE-EEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCc
Q 001163          587 GAVKRTYHGLGKRSVGVVQFDTTKNRF-LAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNG  665 (1134)
Q Consensus       587 ~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~  665 (1134)
                      |...+...+|.. .+..+.++|-+..+ .+++.||...|||+-.|.+++.... + ...+....|+++|..++...+-|.
T Consensus       385 g~l~H~l~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~-g-h~kl~d~kFSqdgts~~lsd~hgq  461 (1113)
T KOG0644|consen  385 GQLLHNLMGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI-G-HGKLVDGKFSQDGTSIALSDDHGQ  461 (1113)
T ss_pred             chhhhhhccccc-ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeec-c-cceeeccccCCCCceEecCCCCCc
Confidence            999999999887 88899999987655 4678999999999999998887763 2 346778899999999999888899


Q ss_pred             EEEEEccCC
Q 001163          666 IKILANADG  674 (1134)
Q Consensus       666 i~iw~~~~~  674 (1134)
                      ++|.....+
T Consensus       462 l~i~g~gqs  470 (1113)
T KOG0644|consen  462 LYILGTGQS  470 (1113)
T ss_pred             eEEeccCCC
Confidence            999876544

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.73  E-value=1e-15  Score=170.52  Aligned_cols=274  Identities=11%  Similarity=0.133  Sum_probs=175.3

Q ss_pred             cccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeec-cCCeEEeeecCCCCCCcccccccCCC
Q 001163          743 IADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALA-SNAVHKLWKWPRNERNSTGKATTNQA  821 (1134)
Q Consensus       743 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~  821 (1134)
                      ++...++.|.+|++...........+.     ..+....++++|+++.|++++ .++.+.+|+++.              
T Consensus         6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-----~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~--------------   66 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGALTLLQVVD-----VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIAD--------------   66 (330)
T ss_pred             EEcCCCCCEEEEEECCCCceeeeeEEe-----cCCCCccEEECCCCCEEEEEECCCCcEEEEEECC--------------
Confidence            344667999999996321111222221     234567889999999887664 478888887652              


Q ss_pred             CcccCCCCCcccc-cCCCCCCCCCCeeEEEEcCCCCeEEEee--CCeEEEEEccC-C---eEEEEecCCCCCeEEEEEcC
Q 001163          822 PQLWQPPSGILMT-NDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMT-F---KTMTTFMPPPPAATFLAFHP  894 (1134)
Q Consensus       822 ~~~~d~~~~~~~~-~~~~~~~h~~~v~~v~~s~dg~~la~~s--dg~i~lwd~~~-~---~~~~~~~~~~~~v~~l~~sp  894 (1134)
                             ++.+.. ....   .......++++|+|+++++++  ++.|.+|++.+ +   +.+..+. +.....+++++|
T Consensus        67 -------~g~l~~~~~~~---~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p  135 (330)
T PRK11028         67 -------DGALTFAAESP---LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP  135 (330)
T ss_pred             -------CCceEEeeeec---CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC
Confidence                   111100 0000   123456899999999999887  68999999964 2   2233332 234567889999


Q ss_pred             CCCcEE-EEEeCCCcEEEEEcccceEEE-------eccCccCceEEEEEeeCCCEEEEEeC-CCcEEEEECCC--Ccccc
Q 001163          895 QDNNII-AIGMEDSSIQIYNVRVDEVKT-------KLKGHQKRITGLAFSNTLNVLVSSGA-DSQLCVWSTDG--WEKQA  963 (1134)
Q Consensus       895 ~~~~~l-a~g~~dg~i~iwd~~~~~~~~-------~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~iwd~~~--~~~~~  963 (1134)
                       +++++ ++...++.|.+||+.+...+.       .... ......++|+|||++++++.. +++|.+|+++.  ++...
T Consensus       136 -~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~  213 (330)
T PRK11028        136 -DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIEC  213 (330)
T ss_pred             -CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEE
Confidence             67666 455567999999997632221       1111 233578999999999988876 89999999974  22211


Q ss_pred             ceeeeecCCCCCCCCCceEEEEcCCCCEEEEE--eeceEEEEeCCCcccceeeccCCC---ccCEEEEEEccCCCEEEEE
Q 001163          964 SKFLTIPNGRTASALADTRVQFHLDQTHLLAV--HETQIAIYEAPKLECLKQFVPREA---SGPITHATYSCDSQSIYVA 1038 (1134)
Q Consensus       964 ~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~h---~~~v~~~~~s~dg~~l~s~ 1038 (1134)
                      ...+...............+.|+|||++|+++  .++.|.+|++........+.  +|   ......++|+|||++|+++
T Consensus       214 ~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~--~~~~~~~~p~~~~~~~dg~~l~va  291 (330)
T PRK11028        214 VQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFE--GHQPTETQPRGFNIDHSGKYLIAA  291 (330)
T ss_pred             EEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEe--EEEeccccCCceEECCCCCEEEEE
Confidence            11111111111111223468999999999996  46899999996543221221  11   1245578999999999987


Q ss_pred             ec-CCcEEEeecC
Q 001163         1039 FE-EGSVGVLTAS 1050 (1134)
Q Consensus      1039 s~-Dg~i~vwd~~ 1050 (1134)
                      .. +++|.+|+++
T Consensus       292 ~~~~~~v~v~~~~  304 (330)
T PRK11028        292 GQKSHHISVYEID  304 (330)
T ss_pred             EccCCcEEEEEEc
Confidence            76 8999999875

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.73  E-value=2.3e-16  Score=151.17  Aligned_cols=308  Identities=13%  Similarity=0.164  Sum_probs=198.1

Q ss_pred             ceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeE
Q 001163          543 SRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMI  622 (1134)
Q Consensus       543 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  622 (1134)
                      +.+.+..+...++++.|..+++ |+++.    ..+.+.+|++.+.+....+.++....|..+..-|+ ..+.+-+.|+.+
T Consensus         6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~----~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L   79 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQANER-LMSGL----SVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLL   79 (323)
T ss_pred             CeeEeccccchheehhhccchh-hhccc----ccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceE
Confidence            4445567777899999988887 55553    35579999999999998888776668888888886 678899999999


Q ss_pred             EEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCC-cEEEEEccCCceeEEEeccCcccccccchhhhhcccc
Q 001163          623 KFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN-GIKILANADGIRLLRTVESRTFDASRVASAAIVKAPA  701 (1134)
Q Consensus       623 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  701 (1134)
                      .+|++..+..+..-.     -.++++.|.+-.  +...+... .+..++-+.... .....+                  
T Consensus        80 ~lw~ia~s~~i~i~S-----i~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde-~h~~D~------------------  133 (323)
T KOG0322|consen   80 ILWTIAYSAFISIHS-----IVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE-THKQDG------------------  133 (323)
T ss_pred             EEEEccCcceEEEee-----eeccccccccce--eccCCCcchhheecCCcccch-hhhhcc------------------
Confidence            999998765544322     234444444321  11111100 000111000000 000000                  


Q ss_pred             cccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEE
Q 001163          702 IGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSR  781 (1134)
Q Consensus       702 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~  781 (1134)
                                                                  +.-..+.+-+              -+..+..+.+.+
T Consensus       134 --------------------------------------------g~~tqv~i~d--------------d~~~~Klgsvmc  155 (323)
T KOG0322|consen  134 --------------------------------------------GDTTQVQIAD--------------DSERSKLGSVMC  155 (323)
T ss_pred             --------------------------------------------CccceeEccC--------------chhccccCceee
Confidence                                                        0000011000              001112344444


Q ss_pred             EEEec-CCc--eeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeE
Q 001163          782 LIYTN-SGL--AILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYV  858 (1134)
Q Consensus       782 l~~sp-dg~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l  858 (1134)
                      ..+.. ++.  .+++|.++|.+.+||++.+...             -+......+.....  .|..+|.++.|.+.-..=
T Consensus       156 ~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~-------------~~~~~~~kv~~~~a--sh~qpvlsldyas~~~rG  220 (323)
T KOG0322|consen  156 QDKDHACGSTFLLLAGYESGHVVIWDLSTGDKI-------------IQLPQSSKVESPNA--SHKQPVLSLDYASSCDRG  220 (323)
T ss_pred             eeccccccceEEEEEeccCCeEEEEEccCCcee-------------eccccccccccchh--hccCcceeeeechhhcCC
Confidence            44222 222  4677888999999998864111             11111111111122  289999999998755555


Q ss_pred             EEee-CCeEEEEEccC--Ce--EEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEE
Q 001163          859 MSAS-GGKISLFNMMT--FK--TMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGL  933 (1134)
Q Consensus       859 a~~s-dg~i~lwd~~~--~~--~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l  933 (1134)
                      ++++ +..+..|++..  +.  ...+.......|..+.+-| |++++|++++|+.||||+.++.+.+..++.|++.|.++
T Consensus       221 isgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~v  299 (323)
T KOG0322|consen  221 ISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAV  299 (323)
T ss_pred             cCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEE
Confidence            5666 67788888743  32  2233333456789999999 99999999999999999999999999999999999999


Q ss_pred             EEeeCCCEEEEEeCCCcEEEEEC
Q 001163          934 AFSNTLNVLVSSGADSQLCVWST  956 (1134)
Q Consensus       934 ~~s~d~~~l~s~s~Dg~i~iwd~  956 (1134)
                      +|+|+...+|.++.|+.|.+|++
T Consensus       300 Afspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  300 AFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EeCCCCchhhhccCCceEEeeec
Confidence            99999999999999999999986

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.73  E-value=2.3e-15  Score=151.78  Aligned_cols=241  Identities=12%  Similarity=0.186  Sum_probs=185.0

Q ss_pred             CCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEEcccceEE
Q 001163          843 EDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDS--SIQIYNVRVDEVK  920 (1134)
Q Consensus       843 ~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg--~i~iwd~~~~~~~  920 (1134)
                      ...+..+.|..|...|..|+....++|+................|..+-|+.   .++|..+.+.  .+++++.+.+..+
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I   81 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI   81 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence            4556777899999999999966678888766554333333344577777875   4777666554  5999999988888


Q ss_pred             EeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-E--ee
Q 001163          921 TKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-V--HE  997 (1134)
Q Consensus       921 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~--~d  997 (1134)
                      +.+. ...+|.++.++  .++|+.+=.+. |+|||+++-+..     ...+...+...++.++++++.+.+||. +  ..
T Consensus        82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklL-----hTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~  152 (391)
T KOG2110|consen   82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLL-----HTIETTPPNPKGLCALSPNNANCYLAYPGSTTS  152 (391)
T ss_pred             EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEecccceee-----hhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence            7766 55679888886  55677766655 999999985533     222222111134666777777889998 3  66


Q ss_pred             ceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCc-EEEeecCCCcceeecCCCcccCCCCCCCceeEE
Q 001163          998 TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGS-VGVLTASTLRLRCRINPTAYLPTNPSLRVYPLV 1076 (1134)
Q Consensus       998 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 1076 (1134)
                      |.|.+||..+.+.+..+.  .|.+.+.+++|++||.+|||+|+.|+ ||||.+.+|+.+..+..+.. +    ..|+++ 
T Consensus       153 GdV~l~d~~nl~~v~~I~--aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~----~~IySL-  224 (391)
T KOG2110|consen  153 GDVVLFDTINLQPVNTIN--AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-P----VSIYSL-  224 (391)
T ss_pred             ceEEEEEcccceeeeEEE--ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-e----eEEEEE-
Confidence            999999999999998888  89999999999999999999999987 79999999999988886653 2    335555 


Q ss_pred             EEecCCCCCEEEEEecCCcEEEEeCCCCC
Q 001163         1077 IAGNPTDPNQFALGLTDGGVYIIEPLEAE 1105 (1134)
Q Consensus      1077 ~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~ 1105 (1134)
                       +|+| ++++|++.|..++|+++.++...
T Consensus       225 -~Fs~-ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  225 -SFSP-DSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             -EECC-CCCeEEEecCCCeEEEEEecccc
Confidence             8999 78999999999999999998766

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=2.7e-15  Score=141.95  Aligned_cols=285  Identities=13%  Similarity=0.138  Sum_probs=194.6

Q ss_pred             cEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCe
Q 001163          778 RVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSY  857 (1134)
Q Consensus       778 ~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~  857 (1134)
                      .|.+-+++|.+++++++..+|.|.++.+..-....             .-..|+.......  +|.++++.++|.  ..+
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~s-------------a~~~gk~~iv~eq--ahdgpiy~~~f~--d~~   74 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGS-------------AEPPGKLKIVPEQ--AHDGPIYYLAFH--DDF   74 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccc-------------cCCCCCcceeecc--ccCCCeeeeeee--hhh
Confidence            45556789999999999999999999876321100             0122222222223  499999999997  467


Q ss_pred             EEEeeCCeEEEEEccCCe------EEEEec-------CCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEecc
Q 001163          858 VMSASGGKISLFNMMTFK------TMTTFM-------PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK  924 (1134)
Q Consensus       858 la~~sdg~i~lwd~~~~~------~~~~~~-------~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~  924 (1134)
                      |++++||.|+-|......      .+.+.+       ..-..|+++-..|..+. +..++.|+.++-||+.+|+..++++
T Consensus        75 Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~i~r~~r  153 (325)
T KOG0649|consen   75 LLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGRIQREYR  153 (325)
T ss_pred             eeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCEEEEEEc
Confidence            888889999988764321      111111       12346899999995554 4455589999999999999999999


Q ss_pred             CccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCC----CCCCceEEEEcCCCCEEEEEeeceE
Q 001163          925 GHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTA----SALADTRVQFHLDQTHLLAVHETQI 1000 (1134)
Q Consensus       925 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~v~~l~fs~dg~~l~~~~d~~i 1000 (1134)
                      ||++-|.+++--.....+.||++||++++||.++++...  .+........    .+..|.+++  -+..+|+.|....+
T Consensus       154 GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~--~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp~l  229 (325)
T KOG0649|consen  154 GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVS--MIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGPKL  229 (325)
T ss_pred             CCcceeeeeeecccCcceeecCCCccEEEEeccccceeE--EeccccChhhcCcccCceeEEEe--ccCceEEecCCCce
Confidence            999999999986666788999999999999999977433  2222111111    113344444  45569999988999


Q ss_pred             EEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEec
Q 001163         1001 AIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGN 1080 (1134)
Q Consensus      1001 ~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 1080 (1134)
                      .+|.+...++...+..   ..+|..+.|-.|  .++++++.+.|.-|.+. |.+...+....       ...++.  +|+
T Consensus       230 slwhLrsse~t~vfpi---pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s-------~~c~s~--s~~  294 (325)
T KOG0649|consen  230 SLWHLRSSESTCVFPI---PARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVES-------TACYSA--SWQ  294 (325)
T ss_pred             eEEeccCCCceEEEec---ccceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccCCc-------cceeee--ccc
Confidence            9999999999988875   456777888544  67778888889999874 55444433211       112233  333


Q ss_pred             CCCCCEEEEEecCCcEEEE
Q 001163         1081 PTDPNQFALGLTDGGVYII 1099 (1134)
Q Consensus      1081 p~~~~~l~s~~~Dg~v~vW 1099 (1134)
                      -+--++|-.++....+.++
T Consensus       295 ~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  295 TSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             CCceEEEEecccceeeeee
Confidence            2224566667777777765

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.71  E-value=2.9e-17  Score=180.54  Aligned_cols=238  Identities=16%  Similarity=0.229  Sum_probs=183.3

Q ss_pred             cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163          414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD  493 (1134)
Q Consensus       414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd  493 (1134)
                      +.||...|+|+.|...|.++++|++|..|+||..+++.++.   ...||.+.|+.++.+.++.  +++++|.|..|++|.
T Consensus       186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---s~rGhs~ditdlavs~~n~--~iaaaS~D~vIrvWr  260 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA---SCRGHSGDITDLAVSSNNT--MIAAASNDKVIRVWR  260 (1113)
T ss_pred             HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc---cCCCCccccchhccchhhh--hhhhcccCceEEEEe
Confidence            67999999999999999999999999999999999988776   7899999999999998877  899999999999999


Q ss_pred             CCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceee---ec-CCCCCeeEEEECcCCCEEEEE
Q 001163          494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD---YD-APGHSSTMMAYSADGARLFSC  569 (1134)
Q Consensus       494 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~---~~-~~~~~v~~~~~s~~~~~l~~~  569 (1134)
                      +.++.++..+++|++.|++++|+|-      .+.+.||++++||.+-......   .. .....+.++.|..++..++++
T Consensus       261 l~~~~pvsvLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg  334 (1113)
T KOG0644|consen  261 LPDGAPVSVLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG  334 (1113)
T ss_pred             cCCCchHHHHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccc
Confidence            9999999999999999999999764      3788999999999872211111   11 122356677777788888888


Q ss_pred             ecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceE
Q 001163          570 GTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCI  648 (1134)
Q Consensus       570 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v  648 (1134)
                      +.++.    -..|....      +..+.. .+.-+.++.+- .+.+++-.+-.+++|++.+|.+...+.++  ...+..+
T Consensus       335 s~d~e----a~n~e~~~------l~~~~~-~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~gh--sd~~yvL  401 (1113)
T KOG0644|consen  335 SRDGE----ARNHEFEQ------LAWRSN-LLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGH--SDEVYVL  401 (1113)
T ss_pred             cCCcc----cccchhhH------hhhhcc-ceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccc--ccceeee
Confidence            76543    23333211      011111 11112222222 45666667888999999999999988866  5578899


Q ss_pred             EEcC-CCcEEEEEECCCcEEEEEccCCc
Q 001163          649 RFNK-EGILLAVSTNDNGIKILANADGI  675 (1134)
Q Consensus       649 ~~sp-~~~~l~~~~~dg~i~iw~~~~~~  675 (1134)
                      .++| +.+...+++.||...|||+..+.
T Consensus       402 d~Hpfn~ri~msag~dgst~iwdi~eg~  429 (1113)
T KOG0644|consen  402 DVHPFNPRIAMSAGYDGSTIIWDIWEGI  429 (1113)
T ss_pred             eecCCCcHhhhhccCCCceEeeecccCC
Confidence            9999 55666789999999999998883

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.71  E-value=3.8e-16  Score=151.38  Aligned_cols=242  Identities=18%  Similarity=0.327  Sum_probs=170.4

Q ss_pred             eeEEEee--cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEE
Q 001163          348 TVVMTLN--QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM  425 (1134)
Q Consensus       348 ~~~~~~~--h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  425 (1134)
                      +++..+.  +-+.|.|+.|.|++..+++.  .|..|.+|+++.+..+.. .            +......+|+...++-+
T Consensus       113 E~v~~Ldteavg~i~cvew~Pns~klasm--~dn~i~l~~l~ess~~va-e------------v~ss~s~e~~~~ftsg~  177 (370)
T KOG1007|consen  113 ECVASLDTEAVGKINCVEWEPNSDKLASM--DDNNIVLWSLDESSKIVA-E------------VLSSESAEMRHSFTSGA  177 (370)
T ss_pred             hHhhcCCHHHhCceeeEEEcCCCCeeEEe--ccCceEEEEcccCcchhe-e------------ecccccccccceecccc
Confidence            3444444  55699999999999977544  488999999998876321 0            11111234777889999


Q ss_pred             EcC--CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCC-CceeEE
Q 001163          426 WSP--DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT-GTKQYI  502 (1134)
Q Consensus       426 ~sp--d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~~  502 (1134)
                      |||  ||+.+++. .|+++..||+++..+...+  -.+|...|..+.|+|+-+. +|+||+.||.|+|||.+. ..++++
T Consensus       178 WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI--~dAHgq~vrdlDfNpnkq~-~lvt~gDdgyvriWD~R~tk~pv~e  253 (370)
T KOG1007|consen  178 WSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSI--EDAHGQRVRDLDFNPNKQH-ILVTCGDDGYVRIWDTRKTKFPVQE  253 (370)
T ss_pred             cCCCCccceEEEe-CCCcEEEEEccchhhhcch--hhhhcceeeeccCCCCceE-EEEEcCCCccEEEEeccCCCccccc
Confidence            999  88888877 5788999999987655432  3478889999999998776 899999999999999875 467889


Q ss_pred             ecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEE
Q 001163          503 FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEW  582 (1134)
Q Consensus       503 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w  582 (1134)
                      +.+|...|+++.|++..+ ++|++|+.|..|.+|....-.....+          .+--|..-    ..+.+....+.  
T Consensus       254 l~~HsHWvW~VRfn~~hd-qLiLs~~SDs~V~Lsca~svSSE~qi----------~~~~dese----~e~~dseer~k--  316 (370)
T KOG1007|consen  254 LPGHSHWVWAVRFNPEHD-QLILSGGSDSAVNLSCASSVSSEQQI----------EFEDDESE----SEDEDSEERVK--  316 (370)
T ss_pred             cCCCceEEEEEEecCccc-eEEEecCCCceeEEEecccccccccc----------cccccccc----CcchhhHHhcc--
Confidence            999999999999998877 79999999999999976542221111          11111000    00000010111  


Q ss_pred             eCCCCeeEEEecCCCCCceEEEEEcCCCCEE-EEEeCCCeEEEEEc
Q 001163          583 NESEGAVKRTYHGLGKRSVGVVQFDTTKNRF-LAAGDEFMIKFWDM  627 (1134)
Q Consensus       583 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~  627 (1134)
                      -+ ....+.++..|.+ .|.+++|+....++ ++-+.||.+.|=.+
T Consensus       317 pL-~dg~l~tydehED-SVY~~aWSsadPWiFASLSYDGRviIs~V  360 (370)
T KOG1007|consen  317 PL-QDGQLETYDEHED-SVYALAWSSADPWIFASLSYDGRVIISSV  360 (370)
T ss_pred             cc-ccccccccccccc-ceEEEeeccCCCeeEEEeccCceEEeecC
Confidence            11 1223456777777 89999999877665 55679999887544

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=7.8e-17  Score=170.85  Aligned_cols=261  Identities=11%  Similarity=0.194  Sum_probs=185.0

Q ss_pred             ecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001163          354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF  433 (1134)
Q Consensus       354 ~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l  433 (1134)
                      .|.+.|++++|.|... .+++++.||++.+|+++....-....           ..+...+.+|.++|.|+++++++..+
T Consensus       292 s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~-----------~epi~tfraH~gPVl~v~v~~n~~~~  359 (577)
T KOG0642|consen  292 SHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKD-----------VEPILTFRAHEGPVLCVVVPSNGEHC  359 (577)
T ss_pred             cchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccc-----------eeeeEEEecccCceEEEEecCCceEE
Confidence            3899999999999988 46899999999999994321111111           11222478999999999999999999


Q ss_pred             EEEeCCCEEEEEEccCCce-------eeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCC
Q 001163          434 GVAYSKHIVHLYTYHGGDE-------LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH  506 (1134)
Q Consensus       434 as~s~dg~v~iwd~~~~~~-------~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h  506 (1134)
                      .+|+.||+|+.|++.....       ......+.||.+.|+.+++|+...  .|++++.||+++.|+...... .+|...
T Consensus       360 ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~f~~~  436 (577)
T KOG0642|consen  360 YSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CTFGEP  436 (577)
T ss_pred             EeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-cccCCc
Confidence            9999999999996642211       112235789999999999999887  699999999999999766555 444322


Q ss_pred             C--cCEEEEeccccCCccEEEEecCCCcEEEEe---cCCCCceeeecCC-------CCCeeEEEECcCCCEEEEEecCCC
Q 001163          507 E--SPVYSICPHHKENIQFIFSTATDGKIKAWL---YDNLGSRVDYDAP-------GHSSTMMAYSADGARLFSCGTNKE  574 (1134)
Q Consensus       507 ~--~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd---~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~~~~  574 (1134)
                      .  +.-.++.+....    ++....+.....++   +........+...       ...+.-+.+.|.+...+++..+  
T Consensus       437 ~e~g~Plsvd~~ss~----~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed--  510 (577)
T KOG0642|consen  437 KEHGYPLSVDRTSSR----PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHED--  510 (577)
T ss_pred             cccCCcceEeeccch----hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccC--
Confidence            1  122233332111    11111222333333   3322222222111       1246677788888888887654  


Q ss_pred             CCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEec
Q 001163          575 GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA  638 (1134)
Q Consensus       575 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  638 (1134)
                        ..|+++|..+++++.....|.. .++++++.|+|.+|++++.||.+++|.+....++.....
T Consensus       511 --~~Ir~~dn~~~~~l~s~~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~  571 (577)
T KOG0642|consen  511 --RSIRFFDNKTGKILHSMVAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTA  571 (577)
T ss_pred             --Cceecccccccccchheeeccc-eecceeecCCCceEEeecCCceeehhhccchheeecccc
Confidence              4599999999999999988887 899999999999999999999999999987766655543

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.71  E-value=3.5e-16  Score=149.85  Aligned_cols=246  Identities=16%  Similarity=0.198  Sum_probs=182.7

Q ss_pred             ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeee-cCCCCEEEEEEecCCCceEEEEEeCCCeEEE
Q 001163          413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIE-AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV  491 (1134)
Q Consensus       413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i  491 (1134)
                      ++.+|.+.|+++.|-.+++ |.+|..-|.|++|++.+.....   .+. .|...|+.+.--|++.   +.+-+.|..+.+
T Consensus         9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~---~~r~~g~~~it~lq~~p~d~---l~tqgRd~~L~l   81 (323)
T KOG0322|consen    9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLP---LIRLFGRLFITNLQSIPNDS---LDTQGRDPLLIL   81 (323)
T ss_pred             Eeccccchheehhhccchh-hhcccccceEEEEEeecCccch---hhhhhccceeeceeecCCcc---hhhcCCCceEEE
Confidence            4679999999999998876 8899999999999999876543   355 5778899999999865   899999999999


Q ss_pred             EECCCCceeE--------------Eec---------------------------------------CCCcCEEEEecccc
Q 001163          492 WDAVTGTKQY--------------IFE---------------------------------------GHESPVYSICPHHK  518 (1134)
Q Consensus       492 wd~~~~~~~~--------------~~~---------------------------------------~h~~~v~~~~~~~~  518 (1134)
                      |++.-+..+.              .+.                                       +..+.+.+..+...
T Consensus        82 w~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~  161 (323)
T KOG0322|consen   82 WTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHA  161 (323)
T ss_pred             EEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccc
Confidence            9987532211              000                                       11223444332221


Q ss_pred             C-CccEEEEecCCCcEEEEecCCCCcee----------eecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCC-
Q 001163          519 E-NIQFIFSTATDGKIKAWLYDNLGSRV----------DYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE-  586 (1134)
Q Consensus       519 ~-~~~~l~s~s~dg~i~vwd~~~~~~~~----------~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-  586 (1134)
                      . ..-++++|.++|.|.+||+.++....          ....+..+|.++.+.+....=++++.+    ..+..|++.. 
T Consensus       162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~----dkl~~~Sl~~s  237 (323)
T KOG0322|consen  162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGAD----DKLVMYSLNHS  237 (323)
T ss_pred             ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcc----ccceeeeeccc
Confidence            1 12356788899999999999864333          234456688888888755554555443    2466776653 


Q ss_pred             -Ce-eEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCC
Q 001163          587 -GA-VKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN  664 (1134)
Q Consensus       587 -~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg  664 (1134)
                       +. .++......+..+..+.+-||++.+++++-|+.|+||+.++.+++..+..|  ...|++++|+|+...+|.++.|+
T Consensus       238 ~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH--sagvn~vAfspd~~lmAaaskD~  315 (323)
T KOG0322|consen  238 TGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH--SAGVNAVAFSPDCELMAAASKDA  315 (323)
T ss_pred             cCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhh--hcceeEEEeCCCCchhhhccCCc
Confidence             22 222222223346788899999999999999999999999999999999977  57899999999999999999999


Q ss_pred             cEEEEEc
Q 001163          665 GIKILAN  671 (1134)
Q Consensus       665 ~i~iw~~  671 (1134)
                      .|.+|++
T Consensus       316 rISLWkL  322 (323)
T KOG0322|consen  316 RISLWKL  322 (323)
T ss_pred             eEEeeec
Confidence            9999986

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=7.8e-16  Score=154.80  Aligned_cols=254  Identities=9%  Similarity=0.074  Sum_probs=181.2

Q ss_pred             ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCce---eeeeeee-ecCCCCEEEEEEecCCCceEEEEEeCCCe
Q 001163          413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDE---LRNHLEI-EAHVGSVNDLAFSYPNKQLSVVTCGEDRV  488 (1134)
Q Consensus       413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~---~~~~~~l-~~h~~~V~~v~~s~~~~~~~l~s~s~d~~  488 (1134)
                      -+.+|.+.|+++.||.++++||+|+.|..+++|++..--.   .+++... ..|...|.|++|...+.  ++++|+.+++
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~--~~~SG~~~~~  128 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR--FLYSGERWGT  128 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe--eEecCCCcce
Confidence            4678999999999999999999999999999999864211   1222111 23567899999998877  8999999999


Q ss_pred             EEEEECCCCceeEEecC--CCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCcee---eecCCCCCeeEEEECcCC
Q 001163          489 IKVWDAVTGTKQYIFEG--HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV---DYDAPGHSSTMMAYSADG  563 (1134)
Q Consensus       489 i~iwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~---~~~~~~~~v~~~~~s~~~  563 (1134)
                      |...|+++.+.+..+..  ..+.|+.+..+|..  +.+++.+.++.|.+||.+......   .....+....++.|+|..
T Consensus       129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D--N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~  206 (609)
T KOG4227|consen  129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTD--NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET  206 (609)
T ss_pred             eEeeecccceeeeeecccCcccceeecccCCCC--ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence            99999999999888753  34589999988874  789999999999999998655222   222234467888999987


Q ss_pred             CEEEEEecCCCCCeEEEEEeCCCCe-eEEEecCC---CC--CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Q 001163          564 ARLFSCGTNKEGESYLVEWNESEGA-VKRTYHGL---GK--RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID  637 (1134)
Q Consensus       564 ~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~---~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  637 (1134)
                      ..|+.......   -+-+||.+... .+..+.+.   ..  ..-..+.|+|.|+.+++.-....-.+||+.+..+.....
T Consensus       207 P~Li~~~~~~~---G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~  283 (609)
T KOG4227|consen  207 PALILVNSETG---GPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS  283 (609)
T ss_pred             ceeEEeccccC---CCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec
Confidence            66655443322   27889987643 22222111   11  122457899999999887765566678887754433222


Q ss_pred             cCC-----CCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163          638 ADG-----GLQASPCIRFNKEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       638 ~~~-----~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      .|.     ....+.+++|.-|. .+++|+++=.|++|.+...
T Consensus       284 D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~  324 (609)
T KOG4227|consen  284 DHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRA  324 (609)
T ss_pred             cCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCC
Confidence            221     12345677777654 4899999999999987543

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.70  E-value=4.8e-15  Score=167.03  Aligned_cols=251  Identities=14%  Similarity=0.136  Sum_probs=184.3

Q ss_pred             cCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEEccCCce--eeeee-eeecCCCCEEEEEEecCCCceEEEEEeCCCeEEE
Q 001163          416 DYTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDE--LRNHL-EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV  491 (1134)
Q Consensus       416 ~h~~~V~~l~~sp-d~~~las~s~dg~v~iwd~~~~~~--~~~~~-~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i  491 (1134)
                      .....|.|++|+| +..+||.|..+|.|.+||+..+..  ..... ....|..+++.+.|..+-...-+++++.||.|+.
T Consensus       240 ~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~  319 (555)
T KOG1587|consen  240 ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICS  319 (555)
T ss_pred             ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEee
Confidence            3567999999999 788899999999999999998765  22111 1346899999999987654335899999999999


Q ss_pred             EECCCCcee------EEec------CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCc--------eeeecCCC
Q 001163          492 WDAVTGTKQ------YIFE------GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS--------RVDYDAPG  551 (1134)
Q Consensus       492 wd~~~~~~~------~~~~------~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--------~~~~~~~~  551 (1134)
                      |+++.-...      ....      .-...++++.|.+... ..++.|+.+|.|.--+......        ...+..|.
T Consensus       320 W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p-~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~  398 (555)
T KOG1587|consen  320 WDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP-NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHI  398 (555)
T ss_pred             eeccccccchhhcccccccccccccccccceeeEeeccCCC-ceEEEEcCCcEEEEEeccCCcccccccccccccccccC
Confidence            987643221      1111      1234578888876544 6789999999988743322221        22455677


Q ss_pred             CCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC-CCeeEEEecCCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEEcCC
Q 001163          552 HSSTMMAYSADGARLFSCGTNKEGESYLVEWNES-EGAVKRTYHGLGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDN  629 (1134)
Q Consensus       552 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~  629 (1134)
                      +.|+++.++|-+..++..+.    +..+++|... ...++..+..+.. .+.+++|||... .|+++..||.|.+||+..
T Consensus       399 g~v~~v~~nPF~~k~fls~g----DW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~  473 (555)
T KOG1587|consen  399 GPVYAVSRNPFYPKNFLSVG----DWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ  473 (555)
T ss_pred             cceEeeecCCCccceeeeec----cceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence            79999999998876655543    5579999988 6667766666665 699999999875 455666899999999975


Q ss_pred             Cc--eeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163          630 VN--LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       630 ~~--~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      ..  ++.+....  ....+.+.|+++|+.|++|...|.+.+|++...
T Consensus       474 ~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  474 DDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             cccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence            44  33333332  456778899999999999999999999998654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.70  E-value=5.9e-14  Score=156.42  Aligned_cols=273  Identities=13%  Similarity=0.192  Sum_probs=177.6

Q ss_pred             eEEEEEeCCCcEEEEecCC-ccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEe-CCCEEEEEEc
Q 001163          370 ILLVVGTNMGDVMLWEVGS-RERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY-SKHIVHLYTY  447 (1134)
Q Consensus       370 ~lla~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s-~dg~v~iwd~  447 (1134)
                      +++++...|+.|.+||+.+ ++......                 + .+.+....++++||+++|++++ .++.|.+|++
T Consensus         3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~-----------------~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~   64 (330)
T PRK11028          3 IVYIASPESQQIHVWNLNHEGALTLLQV-----------------V-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRI   64 (330)
T ss_pred             EEEEEcCCCCCEEEEEECCCCceeeeeE-----------------E-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEE
Confidence            3556667899999999964 33211111                 1 1335677899999999987764 5788999999


Q ss_pred             cC-CceeeeeeeeecCCCCEEEEEEecCCCceEEEEEe-CCCeEEEEECCC-C---ceeEEecCCCcCEEEEeccccCCc
Q 001163          448 HG-GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-EDRVIKVWDAVT-G---TKQYIFEGHESPVYSICPHHKENI  521 (1134)
Q Consensus       448 ~~-~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s-~d~~i~iwd~~~-~---~~~~~~~~h~~~v~~~~~~~~~~~  521 (1134)
                      .. ++ +...... ...+....++|+|+++  ++++++ .++.|.+||+.+ +   +.+..+.+ .....++++++  ++
T Consensus        65 ~~~g~-l~~~~~~-~~~~~p~~i~~~~~g~--~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p--~g  137 (330)
T PRK11028         65 ADDGA-LTFAAES-PLPGSPTHISTDHQGR--FLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDP--DN  137 (330)
T ss_pred             CCCCc-eEEeeee-cCCCCceEEEECCCCC--EEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCC--CC
Confidence            73 33 2211112 1334567899999999  455554 588999999864 3   22333332 23355666754  44


Q ss_pred             cEE-EEecCCCcEEEEecCCCCceee-----e-cCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCC--C--eeE
Q 001163          522 QFI-FSTATDGKIKAWLYDNLGSRVD-----Y-DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE--G--AVK  590 (1134)
Q Consensus       522 ~~l-~s~s~dg~i~vwd~~~~~~~~~-----~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--~--~~~  590 (1134)
                      +++ ++...++.|.+||++..+....     . ...+.....++|+|+|++++++..   ....|.+|++..  +  +.+
T Consensus       138 ~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~  214 (330)
T PRK11028        138 RTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECV  214 (330)
T ss_pred             CEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEE
Confidence            666 4555679999999976432211     1 112345678999999999988753   245699999873  3  333


Q ss_pred             EEecCCC-----CCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCc----eeEEEecCCCCCCcceEEEcCCCcEEEEE
Q 001163          591 RTYHGLG-----KRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVN----LLASIDADGGLQASPCIRFNKEGILLAVS  660 (1134)
Q Consensus       591 ~~~~~~~-----~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~sp~~~~l~~~  660 (1134)
                      ..+....     ......+.++|++++++++. .++.|.+|+++...    .+..+..   ......+.++|+|++|+++
T Consensus       215 ~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~---~~~p~~~~~~~dg~~l~va  291 (330)
T PRK11028        215 QTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT---ETQPRGFNIDHSGKYLIAA  291 (330)
T ss_pred             EEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec---cccCCceEECCCCCEEEEE
Confidence            3332211     11233588999999999986 57899999986543    2222221   1245689999999999887


Q ss_pred             EC-CCcEEEEEccC
Q 001163          661 TN-DNGIKILANAD  673 (1134)
Q Consensus       661 ~~-dg~i~iw~~~~  673 (1134)
                      .. +++|.+|++..
T Consensus       292 ~~~~~~v~v~~~~~  305 (330)
T PRK11028        292 GQKSHHISVYEIDG  305 (330)
T ss_pred             EccCCcEEEEEEcC
Confidence            75 89999998753

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.68  E-value=6e-15  Score=143.21  Aligned_cols=251  Identities=13%  Similarity=0.196  Sum_probs=185.3

Q ss_pred             ccccccCCCCEEEEEEcC-CCCEEEEEeCC-------CEEEEEEccCCcee------eeeeeee-cCCCCEEEEEEecCC
Q 001163          411 ASLSSDYTASVNRVMWSP-DGTLFGVAYSK-------HIVHLYTYHGGDEL------RNHLEIE-AHVGSVNDLAFSYPN  475 (1134)
Q Consensus       411 ~~~~~~h~~~V~~l~~sp-d~~~las~s~d-------g~v~iwd~~~~~~~------~~~~~l~-~h~~~V~~v~~s~~~  475 (1134)
                      ...+..|.+.|+.++-+| |.+.|+++..+       ..+.||.+......      .....|. .+-+.|.|+.|.|++
T Consensus        56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns  135 (370)
T KOG1007|consen   56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS  135 (370)
T ss_pred             hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence            335778999999999999 77788887653       24789998653221      1111233 456689999999999


Q ss_pred             CceEEEEEeCCCeEEEEECCCCce-eEEe-----cCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec-
Q 001163          476 KQLSVVTCGEDRVIKVWDAVTGTK-QYIF-----EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-  548 (1134)
Q Consensus       476 ~~~~l~s~s~d~~i~iwd~~~~~~-~~~~-----~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-  548 (1134)
                      .  .+++-. |..|.+|++..+.. +..+     .+|....++-+|+|..+|+.+++.+ |+++..||+++......+. 
T Consensus       136 ~--klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~d  211 (370)
T KOG1007|consen  136 D--KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIED  211 (370)
T ss_pred             C--eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhh
Confidence            8  466555 88999999988766 3333     2355667778899988888887765 7999999999887766654 


Q ss_pred             CCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC-eeEEEecCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEE
Q 001163          549 APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWD  626 (1134)
Q Consensus       549 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd  626 (1134)
                      .|+..|..+.|+|+-.++++.+.|   ++.|++||.+.. .++..+.+|.- .+.++.|+|.. ..+++++.|..|.+|.
T Consensus       212 AHgq~vrdlDfNpnkq~~lvt~gD---dgyvriWD~R~tk~pv~el~~HsH-WvW~VRfn~~hdqLiLs~~SDs~V~Lsc  287 (370)
T KOG1007|consen  212 AHGQRVRDLDFNPNKQHILVTCGD---DGYVRIWDTRKTKFPVQELPGHSH-WVWAVRFNPEHDQLILSGGSDSAVNLSC  287 (370)
T ss_pred             hhcceeeeccCCCCceEEEEEcCC---CccEEEEeccCCCccccccCCCce-EEEEEEecCccceEEEecCCCceeEEEe
Confidence            566789999999998765544432   456999999865 57778888876 99999999976 5677888999999997


Q ss_pred             cCCCc-----------------------------eeEEEecCCCCCCcceEEEcC-CCcEEEEEECCCcEEEEEc
Q 001163          627 MDNVN-----------------------------LLASIDADGGLQASPCIRFNK-EGILLAVSTNDNGIKILAN  671 (1134)
Q Consensus       627 ~~~~~-----------------------------~~~~~~~~~~~~~v~~v~~sp-~~~~l~~~~~dg~i~iw~~  671 (1134)
                      ..+-.                             .+.++.  .|.+.|++++|+. |.-.+|+-+.||.+.|=.+
T Consensus       288 a~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyd--ehEDSVY~~aWSsadPWiFASLSYDGRviIs~V  360 (370)
T KOG1007|consen  288 ASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYD--EHEDSVYALAWSSADPWIFASLSYDGRVIISSV  360 (370)
T ss_pred             ccccccccccccccccccCcchhhHHhccccccccccccc--ccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence            63211                             112233  3477899999998 5566788899999987544

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.68  E-value=8e-15  Score=165.85  Aligned_cols=200  Identities=18%  Similarity=0.200  Sum_probs=148.3

Q ss_pred             EEcCCCCeEEEee-CCeEEEEEccCCeEEEEecC-CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccc---eEEEecc
Q 001163          850 ALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMP-PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD---EVKTKLK  924 (1134)
Q Consensus       850 ~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~---~~~~~l~  924 (1134)
                      .|.....+|++++ -..|+|||...-.....+.. ...-++++.-+...|.++|+|..||.|++||.+..   ..+...+
T Consensus      1172 dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R 1251 (1387)
T KOG1517|consen 1172 DWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR 1251 (1387)
T ss_pred             ehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec
Confidence            3444334444444 57799999988777766543 34457887776657899999999999999998754   3567888


Q ss_pred             CccCc--eEEEEEeeCCCE-EEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEE
Q 001163          925 GHQKR--ITGLAFSNTLNV-LVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIA 1001 (1134)
Q Consensus       925 ~h~~~--V~~l~~s~d~~~-l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~ 1001 (1134)
                      .|++.  |..+.+-+.|-. |++|+.||.|++||+.......  .+.+.. +...++..+++..+++...+|+|+.+.|+
T Consensus      1252 ~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~--~~~iv~-~~~yGs~lTal~VH~hapiiAsGs~q~ik 1328 (1387)
T KOG1517|consen 1252 EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET--FLTIVA-HWEYGSALTALTVHEHAPIIASGSAQLIK 1328 (1387)
T ss_pred             ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc--cceeee-ccccCccceeeeeccCCCeeeecCcceEE
Confidence            89988  999999887754 9999999999999998843222  222221 11011348999999999999998779999


Q ss_pred             EEeCCCcccceeecc-----CCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCc
Q 001163         1002 IYEAPKLECLKQFVP-----REASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLR 1053 (1134)
Q Consensus      1002 iwd~~~~~~~~~~~~-----~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~ 1053 (1134)
                      ||++. |+.+..+..     ....+.+.+++|+|-.-+||+|+.|.+|.||......
T Consensus      1329 Iy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1329 IYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             EEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            99997 444444331     1125678999999999999999999999999977654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.68  E-value=8.5e-14  Score=140.58  Aligned_cols=241  Identities=12%  Similarity=0.114  Sum_probs=184.8

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC--CeEEEEEC
Q 001163          417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED--RVIKVWDA  494 (1134)
Q Consensus       417 h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d--~~i~iwd~  494 (1134)
                      ....+..+.|+.|...|..|+.|| -++++........   ........|..+-|+  ..  ++|..+.+  +.+++.+.
T Consensus         4 ~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFS--SS--LvaiV~~~qpr~Lkv~~~   75 (391)
T KOG2110|consen    4 KKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFS--SS--LVAIVSIKQPRKLKVVHF   75 (391)
T ss_pred             CCcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeecc--cc--eeEEEecCCCceEEEEEc
Confidence            345677888999999999999999 6888877644321   122233346666676  44  44444433  46999999


Q ss_pred             CCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCC---CCCeeEEEECcCCCEEEEEec
Q 001163          495 VTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP---GHSSTMMAYSADGARLFSCGT  571 (1134)
Q Consensus       495 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~  571 (1134)
                      +.+..+..+. ...+|.++.++.    +.|+.+-.+ .|+|||+.+.+....+...   ...+.++.+++.+.+++.-+.
T Consensus        76 Kk~~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s  149 (391)
T KOG2110|consen   76 KKKTTICEIF-FPTSILAVRMNR----KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS  149 (391)
T ss_pred             ccCceEEEEe-cCCceEEEEEcc----ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC
Confidence            9888887776 556788888743    446555544 4999999998887766543   235666777777778887643


Q ss_pred             CCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCe-EEEEEcCCCceeEEEecCCCCCCcceEEE
Q 001163          572 NKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFM-IKFWDMDNVNLLASIDADGGLQASPCIRF  650 (1134)
Q Consensus       572 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  650 (1134)
                      -.  .+.|++||..+-+.+..+..|.. .+.+++|+++|..|+++++.|+ |||+.+.+|+.+..+........|.+++|
T Consensus       150 ~t--~GdV~l~d~~nl~~v~~I~aH~~-~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~F  226 (391)
T KOG2110|consen  150 TT--SGDVVLFDTINLQPVNTINAHKG-PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSF  226 (391)
T ss_pred             CC--CceEEEEEcccceeeeEEEecCC-ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEE
Confidence            22  45599999999999999998887 9999999999999999999887 69999999999999875444556889999


Q ss_pred             cCCCcEEEEEECCCcEEEEEccCC
Q 001163          651 NKEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       651 sp~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      +|++.+|++.++.++|++|.+...
T Consensus       227 s~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  227 SPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             CCCCCeEEEecCCCeEEEEEeccc
Confidence            999999999999999999998754

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=9.8e-15  Score=167.51  Aligned_cols=235  Identities=12%  Similarity=0.092  Sum_probs=163.2

Q ss_pred             CCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCC---CEEEEEEccCCceee
Q 001163          378 MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK---HIVHLYTYHGGDELR  454 (1134)
Q Consensus       378 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~d---g~v~iwd~~~~~~~~  454 (1134)
                      +..|.+||.+......                    +..|...|.+.+|||||++||.++.+   ..|++||+.+++...
T Consensus       183 ~~~i~i~d~dg~~~~~--------------------lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~  242 (429)
T PRK01742        183 PYEVRVADYDGFNQFI--------------------VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV  242 (429)
T ss_pred             eEEEEEECCCCCCceE--------------------eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence            4689999987654221                    46688899999999999999988654   479999998876322


Q ss_pred             eeeeeecCCCCEEEEEEecCCCceEEEEE-eCCCeEEE--EECCCCceeEEecCCCcCEEEEeccccCCccEEE-EecCC
Q 001163          455 NHLEIEAHVGSVNDLAFSYPNKQLSVVTC-GEDRVIKV--WDAVTGTKQYIFEGHESPVYSICPHHKENIQFIF-STATD  530 (1134)
Q Consensus       455 ~~~~l~~h~~~V~~v~~s~~~~~~~l~s~-s~d~~i~i--wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~s~d  530 (1134)
                       ...+.+|   ...++|+|||+  .|+.+ +.++.+.|  ||+.+++ +..+..+...+....|++  ||..|+ +...+
T Consensus       243 -l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~  313 (429)
T PRK01742        243 -VASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSP--DGQSILFTSDRS  313 (429)
T ss_pred             -EecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECC--CCCEEEEEECCC
Confidence             2234444   34689999999  45544 56776555  4666655 455666777777788865  456555 44567


Q ss_pred             CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCC
Q 001163          531 GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK  610 (1134)
Q Consensus       531 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~  610 (1134)
                      +...+|+++..........+..  ....|+|||+.++..+.+     .+.+||+.+++........   ....+.|+|++
T Consensus       314 g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~~-----~i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG  383 (429)
T PRK01742        314 GSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMINGD-----NVVKQDLTSGSTEVLSSTF---LDESPSISPNG  383 (429)
T ss_pred             CCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcCC-----CEEEEECCCCCeEEecCCC---CCCCceECCCC
Confidence            8889998765433222222222  457899999999887642     2777999988765433332   23457899999


Q ss_pred             CEEEEEeCCCeEEEEEc--CCCceeEEEecCCCCCCcceEEEcCC
Q 001163          611 NRFLAAGDEFMIKFWDM--DNVNLLASIDADGGLQASPCIRFNKE  653 (1134)
Q Consensus       611 ~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~v~~sp~  653 (1134)
                      +.|+.++.++.+.+|++  .+|+.+..+..+  ...+...+|+|-
T Consensus       384 ~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~--~g~~~~p~wsp~  426 (429)
T PRK01742        384 IMIIYSSTQGLGKVLQLVSADGRFKARLPGS--DGQVKFPAWSPY  426 (429)
T ss_pred             CEEEEEEcCCCceEEEEEECCCCceEEccCC--CCCCCCcccCCC
Confidence            99999998898888875  357777777644  456788999984

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.66  E-value=1.4e-14  Score=163.30  Aligned_cols=270  Identities=16%  Similarity=0.209  Sum_probs=195.2

Q ss_pred             cccCCCCCceeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCC
Q 001163          339 SYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT  418 (1134)
Q Consensus       339 ~~~~d~~~~~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  418 (1134)
                      .|+.++. ......+.....|+|++|+|....++|.|+.+|.|.+||+..+......             ........|.
T Consensus       226 vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s-------------~ls~~~~sh~  291 (555)
T KOG1587|consen  226 VWSLKNP-NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPS-------------GLSALEVSHS  291 (555)
T ss_pred             EEecCCC-CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCc-------------ccccccccCC
Confidence            3444443 5677788899999999999999999999999999999999887652100             0111246799


Q ss_pred             CCEEEEEEcCCC--CEEEEEeCCCEEEEEEccCCceeeeeeeee---------cCCCCEEEEEEecCCCceEEEEEeCCC
Q 001163          419 ASVNRVMWSPDG--TLFGVAYSKHIVHLYTYHGGDELRNHLEIE---------AHVGSVNDLAFSYPNKQLSVVTCGEDR  487 (1134)
Q Consensus       419 ~~V~~l~~spd~--~~las~s~dg~v~iwd~~~~~~~~~~~~l~---------~h~~~V~~v~~s~~~~~~~l~s~s~d~  487 (1134)
                      .+|+.+.|-.+.  .-+++++.||.|+.|+++.-........+.         .-...+++++|.+.... .++.|+.+|
T Consensus       292 ~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G  370 (555)
T KOG1587|consen  292 EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEG  370 (555)
T ss_pred             cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCc
Confidence            999999998754  459999999999999887543211111111         12246899999998776 689999999


Q ss_pred             eEEE---EECCCCc-----eeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecC-CCCceeeecCCCCCeeEEE
Q 001163          488 VIKV---WDAVTGT-----KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD-NLGSRVDYDAPGHSSTMMA  558 (1134)
Q Consensus       488 ~i~i---wd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~  558 (1134)
                      .|..   ++...+.     .+..+..|.++|.++.++|=.. ..+.+++ |.++++|.-. ...+...+..+...+.+++
T Consensus       371 ~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~va  448 (555)
T KOG1587|consen  371 KVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVA  448 (555)
T ss_pred             EEEEEeccCCcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeE
Confidence            8877   3333222     2335667899999998765443 3444444 9999999877 5556666666666799999


Q ss_pred             ECcCCCEEEEEecCCCCCeEEEEEeCCCC--eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 001163          559 YSADGARLFSCGTNKEGESYLVEWNESEG--AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN  629 (1134)
Q Consensus       559 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  629 (1134)
                      |||-...++.+.   ++++.|.+||+...  .++.+.... ......+.|++.|..+++|...|.+.+|++..
T Consensus       449 WSptrpavF~~~---d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  449 WSPTRPAVFATV---DGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             EcCcCceEEEEE---cCCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            999887666554   34667999998754  344444333 23567788999999999999999999999854

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.66  E-value=1.3e-14  Score=164.07  Aligned_cols=291  Identities=13%  Similarity=0.202  Sum_probs=204.3

Q ss_pred             CeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC--CCCEEEE
Q 001163          358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGTLFGV  435 (1134)
Q Consensus       358 ~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~~~las  435 (1134)
                      .-..+.|+|-... ++++...-.|+|||++.++.+..+.     .           -......|+.+.+-.  |..++++
T Consensus      1066 ~pk~~~~hpf~p~-i~~ad~r~~i~vwd~e~~~~l~~F~-----n-----------~~~~~t~Vs~l~liNe~D~aLlLt 1128 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQ-IAAADDRERIRVWDWEKGRLLNGFD-----N-----------GAFPDTRVSDLELINEQDDALLLT 1128 (1387)
T ss_pred             CCceeeecCCCce-eEEcCCcceEEEEecccCceecccc-----C-----------CCCCCCccceeeeecccchhheee
Confidence            5667889998884 4666666789999999998765321     1           112446888998876  6779999


Q ss_pred             EeCCCEEEEEEcc-CC----ceeeeeeeeecC----CCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEec-C
Q 001163          436 AYSKHIVHLYTYH-GG----DELRNHLEIEAH----VGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE-G  505 (1134)
Q Consensus       436 ~s~dg~v~iwd~~-~~----~~~~~~~~l~~h----~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~  505 (1134)
                      |+.||.|+||+-. .+    +.+.....+.++    .+.=.-+.|.....  +|+++|.-..|+|||.....++..+. +
T Consensus      1129 as~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G--~Ll~tGd~r~IRIWDa~~E~~~~diP~~ 1206 (1387)
T KOG1517|consen 1129 ASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG--HLLVTGDVRSIRIWDAHKEQVVADIPYG 1206 (1387)
T ss_pred             eccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC--eEEecCCeeEEEEEecccceeEeecccC
Confidence            9999999999643 22    222222222222    12224467777666  56666668899999999888887664 3


Q ss_pred             CCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCc---eeeecCCCCC--eeEEEECcCCCE-EEEEecCCCCCeEE
Q 001163          506 HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS---RVDYDAPGHS--STMMAYSADGAR-LFSCGTNKEGESYL  579 (1134)
Q Consensus       506 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~--v~~~~~s~~~~~-l~~~~~~~~~~~~i  579 (1134)
                      ....|+++.-+. ..|+.+++|..||.|++||.+....   +.....|...  |..+.+.+.|-. |++++.+|+    |
T Consensus      1207 s~t~vTaLS~~~-~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~----I 1281 (1387)
T KOG1517|consen 1207 SSTLVTALSADL-VHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD----I 1281 (1387)
T ss_pred             CCccceeecccc-cCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe----E
Confidence            455677776543 3368999999999999999876543   2334445554  889999887754 888887654    9


Q ss_pred             EEEeCCCCeeEE--EecCCC--CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecC-----CCCCCcceEEE
Q 001163          580 VEWNESEGAVKR--TYHGLG--KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD-----GGLQASPCIRF  650 (1134)
Q Consensus       580 ~~wd~~~~~~~~--~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~~  650 (1134)
                      ++||++......  +...+.  ++..+++..++....+++|+. +.|+||++.. +.+..+...     .....+.|++|
T Consensus      1282 ~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~F 1359 (1387)
T KOG1517|consen 1282 QLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAF 1359 (1387)
T ss_pred             EEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeee
Confidence            999999742221  222222  224888999999999999988 9999999864 333333221     12346789999


Q ss_pred             cCCCcEEEEEECCCcEEEEEccCC
Q 001163          651 NKEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       651 sp~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      +|..-++|+|+.|.+|.||.....
T Consensus      1360 HP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1360 HPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             cchhHhhhhccCCceEEEeecCCc
Confidence            999999999999999999987654

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=8.7e-16  Score=157.98  Aligned_cols=198  Identities=16%  Similarity=0.180  Sum_probs=161.1

Q ss_pred             eEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccC
Q 001163          847 PCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKG  925 (1134)
Q Consensus       847 ~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~  925 (1134)
                      ..++|+.+|..|+++. ||++|+|+..+...+.....|.+.|.++.|+| |+++|++-+.| ..+||++.+|..+.....
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            7899999999999998 99999999988888888888999999999999 99999999999 899999999977766553


Q ss_pred             --ccCceEEEEEeeCC-----CEEEEEeCCCcEEEEECCCCccccc-eeeeecCCCCCCCCCceEEEEcCCCCEEEEE-e
Q 001163          926 --HQKRITGLAFSNTL-----NVLVSSGADSQLCVWSTDGWEKQAS-KFLTIPNGRTASALADTRVQFHLDQTHLLAV-H  996 (1134)
Q Consensus       926 --h~~~V~~l~~s~d~-----~~l~s~s~Dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~  996 (1134)
                        -......+.|+.|+     ...++...-+.|+.|++..+..... +..+....+    ..|.+++.|+||++++.| .
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~----~siSsl~VS~dGkf~AlGT~  301 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF----KSISSLAVSDDGKFLALGTM  301 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc----CcceeEEEcCCCcEEEEecc
Confidence              23345678888877     3444455567788888876654211 111111222    359999999999999995 8


Q ss_pred             eceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCC
Q 001163          997 ETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTAST 1051 (1134)
Q Consensus       997 d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~ 1051 (1134)
                      ||.|.||+..+.+++.... +.|..-|+.+.|+||.+++++.+.|..+.|..+.-
T Consensus       302 dGsVai~~~~~lq~~~~vk-~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  302 DGSVAIYDAKSLQRLQYVK-EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             CCcEEEEEeceeeeeEeeh-hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            9999999999888876655 58999999999999999999999999999888754

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.65  E-value=5.3e-14  Score=162.11  Aligned_cols=255  Identities=13%  Similarity=0.078  Sum_probs=182.0

Q ss_pred             cccCCCCEEEEEEcCCC-CEEEEEeCCCEEEEEEccCC----ceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCe
Q 001163          414 SSDYTASVNRVMWSPDG-TLFGVAYSKHIVHLYTYHGG----DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV  488 (1134)
Q Consensus       414 ~~~h~~~V~~l~~spd~-~~las~s~dg~v~iwd~~~~----~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~  488 (1134)
                      +..|+..|..++.++.. .++++||.||+|++||...-    ...+...++..-..++.++.+.+.+.  .+|.++.||.
T Consensus      1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred             hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence            66799999999998855 99999999999999998632    22333334444567899999999999  6888899999


Q ss_pred             EEEEECCCC--c-----eeEEecCC-CcCEEEE-eccccCCccEEEEecCCCcEEEEecCCCCceee--ecCCCCCeeEE
Q 001163          489 IKVWDAVTG--T-----KQYIFEGH-ESPVYSI-CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD--YDAPGHSSTMM  557 (1134)
Q Consensus       489 i~iwd~~~~--~-----~~~~~~~h-~~~v~~~-~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~  557 (1134)
                      |++.++...  +     +.+....+ .+.+.++ ++........++.+...+.|..||.+.......  .....+.|+++
T Consensus      1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred             EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence            999998762  1     11112222 2334444 333322223788888889999999987665544  34456689999


Q ss_pred             EECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCC---CEEEEEe--CCCeEEEEEcCCCce
Q 001163          558 AYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK---NRFLAAG--DEFMIKFWDMDNVNL  632 (1134)
Q Consensus       558 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~--~dg~i~iwd~~~~~~  632 (1134)
                      +.+|.+.++++|..    .+.+.+||++-+.++..+......++..++.+|-.   ...++++  ..+.|.+|++.+|..
T Consensus      1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred             EecCCceEEEEecC----CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence            99999999999865    44699999999999988876655677777666543   4555544  578899999999876


Q ss_pred             eEEEecC-C----------------CCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163          633 LASIDAD-G----------------GLQASPCIRFNKEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       633 ~~~~~~~-~----------------~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      ...+-.. +                +........+...+..+.+|+.|..||.||....
T Consensus      1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred             eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence            6655332 0                0111123334445568899999999999998765

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.65  E-value=1.8e-12  Score=148.28  Aligned_cols=194  Identities=13%  Similarity=0.167  Sum_probs=149.7

Q ss_pred             CeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCC-----CEEEEEEcCCCCE
Q 001163          358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTA-----SVNRVMWSPDGTL  432 (1134)
Q Consensus       358 ~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~l~~spd~~~  432 (1134)
                      .|....+.-+.+ .++.++.+..+.|||...+.....                    ..+..     ...-+-++++.-+
T Consensus        89 wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~--------------------i~~~er~~l~~~~~~g~s~~~~~  147 (967)
T KOG0974|consen   89 WIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSK--------------------IQSDERCTLYSSLIIGDSAEELY  147 (967)
T ss_pred             cccccchhhhcc-eEEEEEcCceEEEEecccCceehh--------------------cCCCceEEEEeEEEEeccCcEEE
Confidence            344455555555 467888899999999987765432                    11211     2223456778889


Q ss_pred             EEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeE-EecCCCcCEE
Q 001163          433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY-IFEGHESPVY  511 (1134)
Q Consensus       433 las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~~h~~~v~  511 (1134)
                      +++|+.-+.|.+|+........   .+.||.+.|.++.|+-||.  +++|.|.|.++++|++++++.+. +..+|.+.|+
T Consensus       148 i~~gsv~~~iivW~~~~dn~p~---~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw  222 (967)
T KOG0974|consen  148 IASGSVFGEIIVWKPHEDNKPI---RLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVW  222 (967)
T ss_pred             EEeccccccEEEEeccccCCcc---eecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeE
Confidence            9999999999999988332211   4889999999999999999  89999999999999999998876 6778999999


Q ss_pred             EEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCC-CCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCC
Q 001163          512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG-HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE  586 (1134)
Q Consensus       512 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~  586 (1134)
                      .+++.+.    .+++++.|-+.++|+.+..... .+..|. ..+..++..++...+++++.|+    .+++||+..
T Consensus       223 ~~~~~~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds----~lk~~~l~~  289 (967)
T KOG0974|consen  223 ACCFLPN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGNDS----TLKLWDLNG  289 (967)
T ss_pred             EEEeccc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeeccCc----chhhhhhhc
Confidence            9999653    7999999999999976543333 444443 4788999999988899988654    489998764

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=1.6e-15  Score=155.97  Aligned_cols=197  Identities=20%  Similarity=0.205  Sum_probs=153.2

Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceee
Q 001163          888 TFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFL  967 (1134)
Q Consensus       888 ~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~  967 (1134)
                      .+++|+. +|..|++|+.||++|||+..+...+.....|.+.|.++.|||||++|++.+.| ..+||+..++...     
T Consensus       148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~-----  220 (398)
T KOG0771|consen  148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAAL-----  220 (398)
T ss_pred             eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchh-----
Confidence            7899999 88999999999999999988888888888899999999999999999999999 7999999997422     


Q ss_pred             eecCCCCCCCCCceEEEEcCCC---CE-EEE-E-eeceEEEEeCCCccc-----ceeeccCCCccCEEEEEEccCCCEEE
Q 001163          968 TIPNGRTASALADTRVQFHLDQ---TH-LLA-V-HETQIAIYEAPKLEC-----LKQFVPREASGPITHATYSCDSQSIY 1036 (1134)
Q Consensus       968 ~~~~~~~~~~~~v~~l~fs~dg---~~-l~~-~-~d~~i~iwd~~~~~~-----~~~~~~~~h~~~v~~~~~s~dg~~l~ 1036 (1134)
                      +.... .........+.|+.|+   .+ +++ . .-+.|+.||+.....     ..+..  .-...|++++.|+||++++
T Consensus       221 a~~t~-~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~--~~~~siSsl~VS~dGkf~A  297 (398)
T KOG0771|consen  221 ARKTP-FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI--KRFKSISSLAVSDDGKFLA  297 (398)
T ss_pred             hhcCC-cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh--hccCcceeEEEcCCCcEEE
Confidence            21111 1111346788999887   33 233 2 335666666543222     11111  1245899999999999999


Q ss_pred             EEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCC
Q 001163         1037 VAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1103 (1134)
Q Consensus      1037 s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~ 1103 (1134)
                      .|+.||.|.|++..+.+.+.      +.+..|...|+.+  .|+| |.+++++.+.|.+.++..+.-
T Consensus       298 lGT~dGsVai~~~~~lq~~~------~vk~aH~~~VT~l--tF~P-dsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  298 LGTMDGSVAIYDAKSLQRLQ------YVKEAHLGFVTGL--TFSP-DSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EeccCCcEEEEEeceeeeeE------eehhhheeeeeeE--EEcC-CcCcccccccCCceeEEEEee
Confidence            99999999999998877652      4455688988888  8889 789999999999999998865

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.63  E-value=6.2e-14  Score=136.43  Aligned_cols=242  Identities=14%  Similarity=0.184  Sum_probs=174.2

Q ss_pred             CCCCCeeEEEEcCCCC----eEEEeeCCeEEEEEccCCeE----EEEec-----CCCCCeEEEEEcCCCCcEEEEEeCCC
Q 001163          841 NPEDAVPCFALSKNDS----YVMSASGGKISLFNMMTFKT----MTTFM-----PPPPAATFLAFHPQDNNIIAIGMEDS  907 (1134)
Q Consensus       841 ~h~~~v~~v~~s~dg~----~la~~sdg~i~lwd~~~~~~----~~~~~-----~~~~~v~~l~~sp~~~~~la~g~~dg  907 (1134)
                      .|..+++.+.|.|+..    -|++.++..+|+|.+..-+.    ...+.     .+..++++..|..-+.+++.+.+-|-
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT  173 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT  173 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence            3899999999999874    23444567899999863211    11121     24567999999887889999999999


Q ss_pred             cEEEEEcccce---EEEeccCccCceEEEEEeeCC-CEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEE
Q 001163          908 SIQIYNVRVDE---VKTKLKGHQKRITGLAFSNTL-NVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRV  983 (1134)
Q Consensus       908 ~i~iwd~~~~~---~~~~l~~h~~~V~~l~~s~d~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l  983 (1134)
                      +..|||+.++.   +...+-+|..+|..++|+..+ ..+||+|.||.|++||+..-+  +  ..-+.++..+ ..+...+
T Consensus       174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le--H--STIIYE~p~~-~~pLlRL  248 (364)
T KOG0290|consen  174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE--H--STIIYEDPSP-STPLLRL  248 (364)
T ss_pred             eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc--c--ceEEecCCCC-CCcceee
Confidence            99999999863   456788999999999999865 578999999999999998744  1  1112222221 2467888


Q ss_pred             EEcCC-CCEEEE-E-eeceEEEEeCCCc-ccceeeccCCCccCEEEEEEccCC-CEEEEEecCCcEEEeecCCCcceeec
Q 001163          984 QFHLD-QTHLLA-V-HETQIAIYEAPKL-ECLKQFVPREASGPITHATYSCDS-QSIYVAFEEGSVGVLTASTLRLRCRI 1058 (1134)
Q Consensus       984 ~fs~d-g~~l~~-~-~d~~i~iwd~~~~-~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~s~Dg~i~vwd~~~~~~~~~~ 1058 (1134)
                      +|++. -+++|+ + ....|.|.|++.. ..+..+.  +|.+.|..++|.|.. ..|.|+++|..+.+||+...-.....
T Consensus       249 swnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~--~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~  326 (364)
T KOG0290|consen  249 SWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLR--NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGE  326 (364)
T ss_pred             ccCcCCchHHhhhhcCCceEEEEEecCCCcceehhh--cCcccccceEecCCCCceeeecCCcceEEEEecccccccCCC
Confidence            98874 456666 4 4578999999853 3445554  999999999999965 56999999999999999875431111


Q ss_pred             CCCcccCCCCCCCceeEEEEecCCCCCEEEEEecC
Q 001163         1059 NPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTD 1093 (1134)
Q Consensus      1059 ~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~D 1093 (1134)
                      .+.....  -.+.|..+  .|+|..++.++.+...
T Consensus       327 dPilay~--a~~EVNqi--~Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  327 DPILAYT--AGGEVNQI--QWSSSQPDWIAICFGK  357 (364)
T ss_pred             Cchhhhh--ccceeeee--eecccCCCEEEEEecC
Confidence            1111111  23556666  8888778888877654

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.63  E-value=8.3e-14  Score=137.79  Aligned_cols=229  Identities=14%  Similarity=0.118  Sum_probs=174.0

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la  434 (1134)
                      ...+|+|.+|++|+. .+|++.....|.||.......-.                ..+.+..|...|+++.|+|..+.|+
T Consensus         9 ~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snrIv   71 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNRIV   71 (361)
T ss_pred             ccCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCcee
Confidence            457899999999998 56888899999999987765221                1234788999999999999999999


Q ss_pred             EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCcee----EEecCCCcCE
Q 001163          435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ----YIFEGHESPV  510 (1134)
Q Consensus       435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~----~~~~~h~~~v  510 (1134)
                      +|+.|..-+||....+..-++...+..|....++|.|+|.++  .+++||.-..|.||=.+..+--    +.-+.+...|
T Consensus        72 tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv  149 (361)
T KOG1523|consen   72 TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTV  149 (361)
T ss_pred             EccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCccccce
Confidence            999999999999966666777777888999999999999999  7999999999999987655432    1223467889


Q ss_pred             EEEeccccCCccEEEEecCCCcEEEEec-----CCC-------------CceeeecCCCCCeeEEEECcCCCEEEEEecC
Q 001163          511 YSICPHHKENIQFIFSTATDGKIKAWLY-----DNL-------------GSRVDYDAPGHSSTMMAYSADGARLFSCGTN  572 (1134)
Q Consensus       511 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~-----~~~-------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~  572 (1134)
                      .++.|++++  -++++|+.|+..+++..     +..             ....++...++.+..+.|+|+|..|+-.+.|
T Consensus       150 ~sldWhpnn--VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hd  227 (361)
T KOG1523|consen  150 TSLDWHPNN--VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHD  227 (361)
T ss_pred             eeeeccCCc--ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCC
Confidence            999998765  78999999999999853     111             1111233456689999999999999998875


Q ss_pred             CCCCeEEEEEeCCCCe-eEEEecCCCCCceEEEEEcCC
Q 001163          573 KEGESYLVEWNESEGA-VKRTYHGLGKRSVGVVQFDTT  609 (1134)
Q Consensus       573 ~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~  609 (1134)
                      .    .+.+-|..... .+........ +..++.|-.+
T Consensus       228 s----~v~~~da~~p~~~v~~~~~~~l-P~ls~~~ise  260 (361)
T KOG1523|consen  228 S----TVSFVDAAGPSERVQSVATAQL-PLLSVSWISE  260 (361)
T ss_pred             C----ceEEeecCCCchhccchhhccC-CceeeEeecC
Confidence            4    47777766554 2333333222 5555555443

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=3.5e-15  Score=155.27  Aligned_cols=324  Identities=16%  Similarity=0.207  Sum_probs=224.0

Q ss_pred             eeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEe-cCCCcCEEEEeccccCCccEEEEecCCCcEEEE
Q 001163          458 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF-EGHESPVYSICPHHKENIQFIFSTATDGKIKAW  536 (1134)
Q Consensus       458 ~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vw  536 (1134)
                      .|..|.+.|..|.|+..|.  .|+|||.|..|.+||+..+..+..| .||...|....|.|..+...+++++.||.|++=
T Consensus       137 kL~~H~GcVntV~FN~~Gd--~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s  214 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQRGD--VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS  214 (559)
T ss_pred             cccCCCCccceeeecccCc--eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence            5889999999999999999  8999999999999999999888777 569888988888888887899999999998865


Q ss_pred             ecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCC-CEEEE
Q 001163          537 LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK-NRFLA  615 (1134)
Q Consensus       537 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~  615 (1134)
                      .+...+..                                           +-...+..|.+ .+..++.-|+. .-|++
T Consensus       215 ~i~~t~~~-------------------------------------------e~t~rl~~h~g-~vhklav~p~sp~~f~S  250 (559)
T KOG1334|consen  215 EILETGYV-------------------------------------------ENTKRLAPHEG-PVHKLAVEPDSPKPFLS  250 (559)
T ss_pred             eeccccce-------------------------------------------ecceecccccC-ccceeeecCCCCCcccc
Confidence            33211100                                           00111222333 67777777765 46888


Q ss_pred             EeCCCeEEEEEcCCCceeEEEecCCC-C---CCcceEEEcCCC-cEEEEEECCCcEEEEEccCCceeEEEeccCcccccc
Q 001163          616 AGDEFMIKFWDMDNVNLLASIDADGG-L---QASPCIRFNKEG-ILLAVSTNDNGIKILANADGIRLLRTVESRTFDASR  690 (1134)
Q Consensus       616 ~~~dg~i~iwd~~~~~~~~~~~~~~~-~---~~v~~v~~sp~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  690 (1134)
                      +++|+.+.-+|++.+.+...+..... .   ...+.++.+|.. ..+++++.|..+++||...-...  ...+   .+. 
T Consensus       251 ~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e--~~n~---~~~-  324 (559)
T KOG1334|consen  251 CGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKE--ENNG---VLD-  324 (559)
T ss_pred             cccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhc--cccc---hhh-
Confidence            89999999999988765544432211 1   245688888844 58999999999999986532100  0000   000 


Q ss_pred             cchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceecccc
Q 001163          691 VASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRL  770 (1134)
Q Consensus       691 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~  770 (1134)
                                          .+.|..                                                   +. 
T Consensus       325 --------------------~f~p~h---------------------------------------------------l~-  332 (559)
T KOG1334|consen  325 --------------------KFCPHH---------------------------------------------------LV-  332 (559)
T ss_pred             --------------------hcCCcc---------------------------------------------------cc-
Confidence                                011110                                                   00 


Q ss_pred             CCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEE
Q 001163          771 PDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFA  850 (1134)
Q Consensus       771 ~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~  850 (1134)
                        ....-.|++++|+.++.-+++...|-.|++++-....    |.......     +. .........|+-....|..+-
T Consensus       333 --~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~----G~~p~~~s-----~~-~~~~k~vYKGHrN~~TVKgVN  400 (559)
T KOG1334|consen  333 --EDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGD----GSEPDPSS-----PR-EQYVKRVYKGHRNSRTVKGVN  400 (559)
T ss_pred             --ccCcccceeEEecCCccceeeeecccceEEecccccc----CCCCCCCc-----ch-hhccchhhcccccccccceee
Confidence              0134679999999999989999999999988432110    10000000     00 011122233412234466775


Q ss_pred             E-cCCCCeEEEeeC-CeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccce
Q 001163          851 L-SKNDSYVMSASG-GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE  918 (1134)
Q Consensus       851 ~-s~dg~~la~~sd-g~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~  918 (1134)
                      | -|...|+++|+| |.|.||+-.+++.++-+.+...-|+||.-+| --.+||+.+-|..|+||...+.+
T Consensus       401 FfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP-~~PvLAsSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  401 FFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP-HLPVLASSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             eccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCC-CCchhhccCCccceeeecCCccc
Confidence            4 588899999997 8999999999999999998888999999999 67799999999999999875443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.62  E-value=4.6e-13  Score=147.86  Aligned_cols=318  Identities=11%  Similarity=0.099  Sum_probs=199.5

Q ss_pred             CeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCc
Q 001163          576 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI  655 (1134)
Q Consensus       576 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~  655 (1134)
                      ++.|.+.|..+.+.+.++..... .-..+.|+||++++++++.||.|.++|+.+++.+.++...   .....+++++||+
T Consensus        15 ~~~v~viD~~t~~~~~~i~~~~~-~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G---~~~~~i~~s~DG~   90 (369)
T PF02239_consen   15 SGSVAVIDGATNKVVARIPTGGA-PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG---GNPRGIAVSPDGK   90 (369)
T ss_dssp             GTEEEEEETTT-SEEEEEE-STT-EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S---SEEEEEEE--TTT
T ss_pred             CCEEEEEECCCCeEEEEEcCCCC-ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC---CCcceEEEcCCCC
Confidence            44699999999999999987654 3455789999999999999999999999999999998753   2357899999999


Q ss_pred             EEEEEE-CCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCc
Q 001163          656 LLAVST-NDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSR  734 (1134)
Q Consensus       656 ~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  734 (1134)
                      +++++. .++.+.++|..+. +.++.+......                                               
T Consensus        91 ~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~-----------------------------------------------  122 (369)
T PF02239_consen   91 YVYVANYEPGTVSVIDAETL-EPVKTIPTGGMP-----------------------------------------------  122 (369)
T ss_dssp             EEEEEEEETTEEEEEETTT---EEEEEE--EE------------------------------------------------
T ss_pred             EEEEEecCCCceeEeccccc-cceeeccccccc-----------------------------------------------
Confidence            988775 5899999999887 455544321100                                               


Q ss_pred             cCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeecc-CCeEEeeecCCCCCCcc
Q 001163          735 NFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALAS-NAVHKLWKWPRNERNST  813 (1134)
Q Consensus       735 ~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~-dg~i~vw~~~~~~~~~~  813 (1134)
                                                           ......++.++..+|....++..-. .+.+.+-|....     
T Consensus       123 -------------------------------------~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~-----  160 (369)
T PF02239_consen  123 -------------------------------------VDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP-----  160 (369)
T ss_dssp             -------------------------------------TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS-----
T ss_pred             -------------------------------------ccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc-----
Confidence                                                 0002356777888888875554444 466655554321     


Q ss_pred             cccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee--CCeEEEEEccCCeEEEEecC----CCCCe
Q 001163          814 GKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMP----PPPAA  887 (1134)
Q Consensus       814 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s--dg~i~lwd~~~~~~~~~~~~----~~~~v  887 (1134)
                                    ..  +....+.   .........|+|++++++++.  ++.|-++|..+++.+..+..    |....
T Consensus       161 --------------~~--~~~~~i~---~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~  221 (369)
T PF02239_consen  161 --------------KN--LKVTTIK---VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPG  221 (369)
T ss_dssp             --------------SC--EEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTE
T ss_pred             --------------cc--cceeeec---ccccccccccCcccceeeecccccceeEEEeeccceEEEEeecccccccccc
Confidence                          00  0000010   234566889999999988775  68899999999988776542    23333


Q ss_pred             EEEEEcCC---------CCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEE----eCCCcEEEE
Q 001163          888 TFLAFHPQ---------DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSS----GADSQLCVW  954 (1134)
Q Consensus       888 ~~l~~sp~---------~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~----s~Dg~i~iw  954 (1134)
                      ..+ .+|.         .+...++.-....+.+|+..+.+.++++....++ .-+..+|+++++...    ...++|.++
T Consensus       222 ~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~vi  299 (369)
T PF02239_consen  222 ANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVI  299 (369)
T ss_dssp             EEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEE
T ss_pred             ccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEE
Confidence            332 2231         1222222223345667888889999999877666 778889999999988    455889999


Q ss_pred             ECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE---eeceEEEEeCCCcccceeec
Q 001163          955 STDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV---HETQIAIYEAPKLECLKQFV 1015 (1134)
Q Consensus       955 d~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~---~d~~i~iwd~~~~~~~~~~~ 1015 (1134)
                      |.++.+.    ...+..+..   ..+..+.|++||+++.++   .++.|.|||..+.+.+..+.
T Consensus       300 D~~tl~~----~~~i~~~~~---~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  300 DKKTLKV----VKTITPGPG---KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             ECCGTEE----EE-HHHHHT-----EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             ECcCcce----eEEEeccCC---CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence            9988531    122211111   237889999999998884   33489999999999887775

...

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.61  E-value=1.4e-13  Score=136.12  Aligned_cols=234  Identities=17%  Similarity=0.214  Sum_probs=176.8

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECC-C
Q 001163          418 TASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV-T  496 (1134)
Q Consensus       418 ~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~-~  496 (1134)
                      -.+|+|.+|++|+..+|.+-.+..|.||.....+......++..|...|+.++|+|..+  .|++|+.|...++|... .
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~~   87 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPSG   87 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCCC
Confidence            46999999999999999999999999999998886777778999999999999999998  69999999999999983 3


Q ss_pred             C--ceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCcee----eecCCCCCeeEEEECcCCCEEEEEe
Q 001163          497 G--TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV----DYDAPGHSSTMMAYSADGARLFSCG  570 (1134)
Q Consensus       497 ~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~  570 (1134)
                      +  ++...+..+....+++.|+|..  +.+++|+.-+.|.||-++..+.-.    ........|.++.|.|++-+|++++
T Consensus        88 ~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs  165 (361)
T KOG1523|consen   88 GTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS  165 (361)
T ss_pred             CeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence            3  3344556688899999997766  789999999999999887544321    2334456799999999999999988


Q ss_pred             cCCCCCeEEEEEeC-----CC-------------CeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc-
Q 001163          571 TNKEGESYLVEWNE-----SE-------------GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN-  631 (1134)
Q Consensus       571 ~~~~~~~~i~~wd~-----~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-  631 (1134)
                      .|+    ..+++..     ++             |+++..+. ...+.+..+.|+|+|+.|+-.+.|+.+.+-|..... 
T Consensus       166 ~D~----k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~  240 (361)
T KOG1523|consen  166 TDG----KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE  240 (361)
T ss_pred             cCc----ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch
Confidence            654    3455432     11             23333443 233478999999999999999999999999987765 


Q ss_pred             eeEEEecCCCCCCcceEEEcCCCcEEEEEECC
Q 001163          632 LLASIDADGGLQASPCIRFNKEGILLAVSTND  663 (1134)
Q Consensus       632 ~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d  663 (1134)
                      .+..+...  .-+..++.|-.+.. ++.++.|
T Consensus       241 ~v~~~~~~--~lP~ls~~~ise~~-vv~ag~~  269 (361)
T KOG1523|consen  241 RVQSVATA--QLPLLSVSWISENS-VVAAGYD  269 (361)
T ss_pred             hccchhhc--cCCceeeEeecCCc-eeecCCC
Confidence            23333221  23455666655443 3344444

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.61  E-value=8e-13  Score=145.92  Aligned_cols=318  Identities=13%  Similarity=0.114  Sum_probs=196.4

Q ss_pred             EEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEE
Q 001163          524 IFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGV  603 (1134)
Q Consensus       524 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~  603 (1134)
                      +++-..++.|.+.|..+.+....+......-..+.++|||+++++++.+    +.|.++|+.+++.+.++....  ....
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rd----g~vsviD~~~~~~v~~i~~G~--~~~~   82 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRD----GTVSVIDLATGKVVATIKVGG--NPRG   82 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETT----SEEEEEETTSSSEEEEEE-SS--EEEE
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCC----CeEEEEECCcccEEEEEecCC--Ccce
Confidence            3566678999999999888777776654444567899999999998653    469999999999999887654  4678


Q ss_pred             EEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCC-----CCCCcceEEEcCCCcEEEEEEC-CCcEEEEEccCCce
Q 001163          604 VQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADG-----GLQASPCIRFNKEGILLAVSTN-DNGIKILANADGIR  676 (1134)
Q Consensus       604 ~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~sp~~~~l~~~~~-dg~i~iw~~~~~~~  676 (1134)
                      +++++||++++++. .++.+.++|.++.+++..+...+     ....+..+..+|....++..-. .+.|.+.|..+...
T Consensus        83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~  162 (369)
T PF02239_consen   83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN  162 (369)
T ss_dssp             EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred             EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence            99999999999887 78999999999999999886432     2235667777887775554444 47777767654311


Q ss_pred             eEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeee
Q 001163          677 LLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKL  756 (1134)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~  756 (1134)
                      .......                                                                         
T Consensus       163 ~~~~~i~-------------------------------------------------------------------------  169 (369)
T PF02239_consen  163 LKVTTIK-------------------------------------------------------------------------  169 (369)
T ss_dssp             EEEEEEE-------------------------------------------------------------------------
T ss_pred             cceeeec-------------------------------------------------------------------------
Confidence            1110000                                                                         


Q ss_pred             cccCCccceeccccCCccccccEEEEEEecCCceeeee-ccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCccccc
Q 001163          757 TEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILAL-ASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTN  835 (1134)
Q Consensus       757 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  835 (1134)
                                        .........|+|++++++++ ..+..+.++|......             +..+..|...  
T Consensus       170 ------------------~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~-------------v~~i~~g~~p--  216 (369)
T PF02239_consen  170 ------------------VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL-------------VALIDTGKKP--  216 (369)
T ss_dssp             --------------------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE-------------EEEEE-SSSB--
T ss_pred             ------------------ccccccccccCcccceeeecccccceeEEEeeccceE-------------EEEeeccccc--
Confidence                              11233457899999987665 4466788887553211             0111111110  


Q ss_pred             CCCCCCCCCCeeEE---------EEcCCCCeEEEe-eCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEE--
Q 001163          836 DISDTNPEDAVPCF---------ALSKNDSYVMSA-SGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIG--  903 (1134)
Q Consensus       836 ~~~~~~h~~~v~~v---------~~s~dg~~la~~-sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g--  903 (1134)
                            |..+...+         +.+..+...++. +.+.+.+||..+++.++++....++ ..+..+| +++++.+.  
T Consensus       217 ------~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~  288 (369)
T PF02239_consen  217 ------HPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTF  288 (369)
T ss_dssp             ------EETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--T-T-SEEEEE-T
T ss_pred             ------cccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCC-CCccEEeecc
Confidence                  22222211         122333333222 3456678999999999999876666 8888899 88888887  


Q ss_pred             --eCCCcEEEEEcccceEEEeccCcc-CceEEEEEeeCCCEEEEEeCCC--cEEEEECCCCcc
Q 001163          904 --MEDSSIQIYNVRVDEVKTKLKGHQ-KRITGLAFSNTLNVLVSSGADS--QLCVWSTDGWEK  961 (1134)
Q Consensus       904 --~~dg~i~iwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l~s~s~Dg--~i~iwd~~~~~~  961 (1134)
                        ...++|.++|..+.+.+.++.... ..+..+.|++||+.+..+..++  .|.+||..+.+.
T Consensus       289 ~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~  351 (369)
T PF02239_consen  289 LNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKE  351 (369)
T ss_dssp             T-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred             CCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEE
Confidence              455799999999998888776433 3588999999999877655443  699999999663

...

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=3.7e-13  Score=135.11  Aligned_cols=262  Identities=12%  Similarity=0.139  Sum_probs=163.9

Q ss_pred             ccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC
Q 001163          775 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN  854 (1134)
Q Consensus       775 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d  854 (1134)
                      ....|++++|-|.+...++.+--+.|.+|..+.......       .++  -..++...  .+.+.+| .+|+.+.|.+|
T Consensus       139 sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r-------~~~--~~s~~~~q--vl~~pgh-~pVtsmqwn~d  206 (445)
T KOG2139|consen  139 SQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANR-------NIR--MMSTHHLQ--VLQDPGH-NPVTSMQWNED  206 (445)
T ss_pred             hhcceeEEEeccCCcceeeeeecceeEEEEcCccccccc-------ccc--cccccchh--heeCCCC-ceeeEEEEcCC
Confidence            346789999999876666666666789998764311000       000  00111111  1222234 78999999999


Q ss_pred             CCeEEEee--CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEE
Q 001163          855 DSYVMSAS--GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITG  932 (1134)
Q Consensus       855 g~~la~~s--dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~  932 (1134)
                      |..+++++  +..|.|||.+++..+.......+.++-+.||| |+.+|+.++-|+..++|+.....-.....--.+.|..
T Consensus       207 gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqt  285 (445)
T KOG2139|consen  207 GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQT  285 (445)
T ss_pred             CCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceee
Confidence            99999998  57899999999888776655678899999999 8999999999999999965433222223334458999


Q ss_pred             EEEeeCCCEEEEEeCCCcEEEEECCCCcccc--------cee--------eeecCCCCCCCCCceEEEEcCCCCEEEEEe
Q 001163          933 LAFSNTLNVLVSSGADSQLCVWSTDGWEKQA--------SKF--------LTIPNGRTASALADTRVQFHLDQTHLLAVH  996 (1134)
Q Consensus       933 l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~--------~~~--------~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~  996 (1134)
                      .+|+|+|.+|.-++. |.-++|.+.-.....        +..        ..+..+.....+++.+++|.|.|.+||+..
T Consensus       286 acWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f  364 (445)
T KOG2139|consen  286 ACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF  364 (445)
T ss_pred             eeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence            999999987665432 223444433211100        001        111223222346789999999999999953


Q ss_pred             ec---------eEEEEeCCCcccceeeccCC-CccCEEEEEEcc---CCCEEEEEecCCcEEEeecC
Q 001163          997 ET---------QIAIYEAPKLECLKQFVPRE-ASGPITHATYSC---DSQSIYVAFEEGSVGVLTAS 1050 (1134)
Q Consensus       997 d~---------~i~iwd~~~~~~~~~~~~~~-h~~~v~~~~~s~---dg~~l~s~s~Dg~i~vwd~~ 1050 (1134)
                      .+         .|.+||....-.+.-..++- ......-++|+|   +|.+|..+=.-|.+.-|++.
T Consensus       365 Kg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  365 KGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             cCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence            32         35667766443332222110 012244566665   66677666666777777653

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=5.9e-13  Score=133.71  Aligned_cols=287  Identities=15%  Similarity=0.190  Sum_probs=189.6

Q ss_pred             CCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC-CCCEEE
Q 001163          356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTLFG  434 (1134)
Q Consensus       356 ~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~la  434 (1134)
                      +..+..++|++.-- -+|++..|-.|+|||-.......                   +-......|+|++|-| .++-|+
T Consensus        98 ~~dlr~~aWhqH~~-~fava~nddvVriy~ksst~pt~-------------------Lks~sQrnvtclawRPlsasela  157 (445)
T KOG2139|consen   98 EIDLRGVAWHQHII-AFAVATNDDVVRIYDKSSTCPTK-------------------LKSVSQRNVTCLAWRPLSASELA  157 (445)
T ss_pred             hcceeeEeechhhh-hhhhhccCcEEEEeccCCCCCce-------------------ecchhhcceeEEEeccCCcceee
Confidence            34677899999544 35788999999999977632211                   1123456899999999 456777


Q ss_pred             EEeCCCEEEEEEccCCceee-----------eeeeeecCCCCEEEEEEecCCCceEEEEEeC-CCeEEEEECCCCceeEE
Q 001163          435 VAYSKHIVHLYTYHGGDELR-----------NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-DRVIKVWDAVTGTKQYI  502 (1134)
Q Consensus       435 s~s~dg~v~iwd~~~~~~~~-----------~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~-d~~i~iwd~~~~~~~~~  502 (1134)
                      .|+..| |+||.........           ....-.|| .+|++++|.+||.  .+++++. |..|.|||..+|.++..
T Consensus       158 vgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL  233 (445)
T KOG2139|consen  158 VGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPL  233 (445)
T ss_pred             eeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccc
Confidence            787777 9999865321111           11123355 6899999999999  6788775 56899999999988765


Q ss_pred             ecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEE
Q 001163          503 FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEW  582 (1134)
Q Consensus       503 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w  582 (1134)
                      ....-+.+.-+.|+|  |+++|++++-|+..++|+....-.........+.|...+|+|+|++|+.....   ...++-.
T Consensus       234 ~~~glgg~slLkwSP--dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg---sp~lysl  308 (445)
T KOG2139|consen  234 IPKGLGGFSLLKWSP--DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG---SPRLYSL  308 (445)
T ss_pred             cccCCCceeeEEEcC--CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC---CceEEEE
Confidence            544567788889865  45899999999999999655433333333344589999999999988766532   2122211


Q ss_pred             --eCCCCe-----------eEEEe------cC--CCCCceEEEEEcCCCCEEEEEeCC--------CeEEEEEcCCCcee
Q 001163          583 --NESEGA-----------VKRTY------HG--LGKRSVGVVQFDTTKNRFLAAGDE--------FMIKFWDMDNVNLL  633 (1134)
Q Consensus       583 --d~~~~~-----------~~~~~------~~--~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~  633 (1134)
                        +-+.+.           ++..+      .+  .-.+.+.+++|.|.|.++++.-..        +.|.+||.+..-.+
T Consensus       309 ~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~v  388 (445)
T KOG2139|consen  309 TFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPV  388 (445)
T ss_pred             eecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCce
Confidence              111110           01111      11  012367789999999999986533        34677887765555


Q ss_pred             EEEe--cCCCCCCcceEEEcC---CCcEEEEEECCCcEEEEEcc
Q 001163          634 ASID--ADGGLQASPCIRFNK---EGILLAVSTNDNGIKILANA  672 (1134)
Q Consensus       634 ~~~~--~~~~~~~v~~v~~sp---~~~~l~~~~~dg~i~iw~~~  672 (1134)
                      ....  ..++. ....++|+|   ++.+|..+-..|.+.-|++.
T Consensus       389 els~cg~i~ge-~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  389 ELSYCGMIGGE-YPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             EEEecccccCC-CCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence            4431  11111 245677777   67888888888888877653

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=1.8e-13  Score=157.07  Aligned_cols=235  Identities=11%  Similarity=0.078  Sum_probs=162.1

Q ss_pred             CeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCceeEEEecCCCCCCcceEEEcC
Q 001163          576 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE---FMIKFWDMDNVNLLASIDADGGLQASPCIRFNK  652 (1134)
Q Consensus       576 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp  652 (1134)
                      +..|++||..... .+.+..+.. .+....|+|||+.|+.++.+   ..|++||+.+++........+   ....++|+|
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~-~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSP  257 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQ-PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSP  257 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCC-ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECC
Confidence            3569999986554 444555544 78889999999999987743   479999998876543322222   234789999


Q ss_pred             CCcEEEEEE-CCCcEEEEEc--cCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCC
Q 001163          653 EGILLAVST-NDNGIKILAN--ADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGM  729 (1134)
Q Consensus       653 ~~~~l~~~~-~dg~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  729 (1134)
                      ||+.|+.++ .+|.+.||.+  .++  ....+..                                              
T Consensus       258 DG~~La~~~~~~g~~~Iy~~d~~~~--~~~~lt~----------------------------------------------  289 (429)
T PRK01742        258 DGSRLAFASSKDGVLNIYVMGANGG--TPSQLTS----------------------------------------------  289 (429)
T ss_pred             CCCEEEEEEecCCcEEEEEEECCCC--CeEeecc----------------------------------------------
Confidence            999888765 6787766644  322  1111110                                              


Q ss_pred             CCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeec-cCCeEEeeecCCC
Q 001163          730 SNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALA-SNAVHKLWKWPRN  808 (1134)
Q Consensus       730 ~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~-~dg~i~vw~~~~~  808 (1134)
                                                                   +...+....|+|||+.++.++ .+|...||+++..
T Consensus       290 ---------------------------------------------~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~  324 (429)
T PRK01742        290 ---------------------------------------------GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSAS  324 (429)
T ss_pred             ---------------------------------------------CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECC
Confidence                                                         223456789999999877655 4688888876521


Q ss_pred             CCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeE
Q 001163          809 ERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAAT  888 (1134)
Q Consensus       809 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~  888 (1134)
                                          .+....  +.   +..  ...+|+|||++|+..+...+.+||+.+++........  ...
T Consensus       325 --------------------~~~~~~--l~---~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~--~~~  375 (429)
T PRK01742        325 --------------------GGGASL--VG---GRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTF--LDE  375 (429)
T ss_pred             --------------------CCCeEE--ec---CCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCC--CCC
Confidence                                111111  11   222  3568999999998887556777999888765433222  345


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEEcc--cceEEEeccCccCceEEEEEeeC
Q 001163          889 FLAFHPQDNNIIAIGMEDSSIQIYNVR--VDEVKTKLKGHQKRITGLAFSNT  938 (1134)
Q Consensus       889 ~l~~sp~~~~~la~g~~dg~i~iwd~~--~~~~~~~l~~h~~~V~~l~~s~d  938 (1134)
                      .+.|+| ++++|++++.++.+.+|++.  +|+.+..+..|.+.+...+|||-
T Consensus       376 ~~~~sP-dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        376 SPSISP-NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             CceECC-CCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence            688999 89999999999999888864  57888889999998999999974

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.59  E-value=2.2e-12  Score=127.90  Aligned_cols=241  Identities=15%  Similarity=0.174  Sum_probs=169.5

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeC-----CCeEEEEEC
Q 001163          420 SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-----DRVIKVWDA  494 (1134)
Q Consensus       420 ~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~-----d~~i~iwd~  494 (1134)
                      ...+++|+.|...+++|..+| .+||+++.-+...   ...-+.+.+.-+...-..+.+.|+-|+.     -+.|.|||=
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD   82 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDD   82 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEec
Confidence            445599999999999999988 8999987633211   1222222222222222344323333332     247999997


Q ss_pred             CCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecC-CCCceeeecCCCC--CeeEEEECcCCCEEEEEec
Q 001163          495 VTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD-NLGSRVDYDAPGH--SSTMMAYSADGARLFSCGT  571 (1134)
Q Consensus       495 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~  571 (1134)
                      ...+++.++. ...+|.++++..    ..|++.- .+.|.+|.+. +.+....+.....  ...+++-..+...|+.-+.
T Consensus        83 ~k~~~i~el~-f~~~I~~V~l~r----~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~  156 (346)
T KOG2111|consen   83 LKERCIIELS-FNSEIKAVKLRR----DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGF  156 (346)
T ss_pred             ccCcEEEEEE-eccceeeEEEcC----CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCC
Confidence            7788888886 678899998854    3455444 5889999887 3444444433222  3333333333334444332


Q ss_pred             CCCCCeEEEEEeCCCCee--EEEecCCCCCceEEEEEcCCCCEEEEEeCCCe-EEEEEcCCCceeEEEecCCCCCCcceE
Q 001163          572 NKEGESYLVEWNESEGAV--KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFM-IKFWDMDNVNLLASIDADGGLQASPCI  648 (1134)
Q Consensus       572 ~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v  648 (1134)
                         ..+.|++-|+...+.  ...+..|.. .|.+++.+-+|..++++|..|+ |+|||..+|+++..+........|.++
T Consensus       157 ---k~GqvQi~dL~~~~~~~p~~I~AH~s-~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i  232 (346)
T KOG2111|consen  157 ---KTGQVQIVDLASTKPNAPSIINAHDS-DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCI  232 (346)
T ss_pred             ---ccceEEEEEhhhcCcCCceEEEcccC-ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEE
Confidence               346799999877655  466777776 9999999999999999998887 799999999999998765556789999


Q ss_pred             EEcCCCcEEEEEECCCcEEEEEccCC
Q 001163          649 RFNKEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       649 ~~sp~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      +|||+..+||++++.|++.||.+...
T Consensus       233 aFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  233 AFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             EeCCCccEEEEEcCCCeEEEEEeecC
Confidence            99999999999999999999998764

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.59  E-value=1e-11  Score=142.22  Aligned_cols=276  Identities=15%  Similarity=0.125  Sum_probs=187.5

Q ss_pred             eeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCC--CCEEEEEEcCCCCEEEEE
Q 001163          359 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT--ASVNRVMWSPDGTLFGVA  436 (1134)
Q Consensus       359 V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~l~~spd~~~las~  436 (1134)
                      +++.++-.  +||+|-  ..-.|.+||+..+..+...  +           +...+..|.  +.+.+     .+.+++++
T Consensus        10 l~~~~~~~--~~llag--~gp~i~~yd~~s~~li~~~--~-----------~~~~~~~H~~e~~~~l-----~~~~~v~~   67 (967)
T KOG0974|consen   10 LNLPQLVS--DYLLAG--SGPEILVYDLSSGCLIRHL--I-----------QSKILEVHRGEGKVKL-----LSGKIVTC   67 (967)
T ss_pred             ccchhhcc--ceeeec--CCCceEEeeCCchhHhhhh--h-----------hhccccccccccccee-----ccceEEEE
Confidence            33444433  566653  3346999999998876531  1           111233440  01100     23345555


Q ss_pred             eCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCE--EEEe
Q 001163          437 YSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV--YSIC  514 (1134)
Q Consensus       437 s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v--~~~~  514 (1134)
                      ..-+.+..=+..-..       +..-.+.|....+..+.+  .++.+..++.+.+||...+..+..+.......  .++-
T Consensus        68 ~~~~~v~~~~~~~~~-------~~~~s~wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~  138 (967)
T KOG0974|consen   68 AKSDEVYVKEASNQI-------IERFSDWIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLI  138 (967)
T ss_pred             Eeecceeecchhhhh-------hhhccccccccchhhhcc--eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEE
Confidence            443333332222111       112233444466666677  58888888999999998888777665322111  1122


Q ss_pred             ccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEE-Ee
Q 001163          515 PHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKR-TY  593 (1134)
Q Consensus       515 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~-~~  593 (1134)
                      +-...+.-++++|+.-+.|.+|+....+....+.+|.+.+.++.++.||+++++++.|+    .+++|++.+++... +.
T Consensus       139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDR----siRlW~i~s~~~~~~~~  214 (967)
T KOG0974|consen  139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDR----SIRLWPIDSREVLGCTG  214 (967)
T ss_pred             EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCc----ceeeeecccccccCccc
Confidence            22234447899999999999999885555556888999999999999999999999765    49999999998776 55


Q ss_pred             cCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccC
Q 001163          594 HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD  673 (1134)
Q Consensus       594 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~  673 (1134)
                      -+|.. .+..++|.|.  .++++++|.+.++|+.. ++.+..+..|.. ..+..++..++...+++++.|+.+++|+...
T Consensus       215 fgHsa-Rvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g-~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  215 FGHSA-RVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSG-KGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             ccccc-eeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhh-cceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            66766 8888999987  99999999999999764 444456665543 3678999999999999999999999999765


Q ss_pred             C
Q 001163          674 G  674 (1134)
Q Consensus       674 ~  674 (1134)
                      .
T Consensus       290 r  290 (967)
T KOG0974|consen  290 R  290 (967)
T ss_pred             c
Confidence            3

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.58  E-value=4.6e-13  Score=154.52  Aligned_cols=267  Identities=16%  Similarity=0.191  Sum_probs=181.7

Q ss_pred             ceeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEE
Q 001163          347 KTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM  425 (1134)
Q Consensus       347 ~~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  425 (1134)
                      +.++..+. |...|..++.++...-++++||.||+|++||...-..-. ..++      +     ...+.-....+.++.
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~r------S-----~ltys~~~sr~~~vt 1105 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSAR------S-----ELTYSPEGSRVEKVT 1105 (1431)
T ss_pred             ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ceee------e-----eEEEeccCCceEEEE
Confidence            44555555 899999999988774588999999999999986432110 0000      0     001222567999999


Q ss_pred             EcCCCCEEEEEeCCCEEEEEEccCC--ceeee--eee--eecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCce
Q 001163          426 WSPDGTLFGVAYSKHIVHLYTYHGG--DELRN--HLE--IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK  499 (1134)
Q Consensus       426 ~spd~~~las~s~dg~v~iwd~~~~--~~~~~--~~~--l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~  499 (1134)
                      +.+.++.+|+++.||.|++.+++..  +....  ...  +..-..-|..-+|....+...++.+..-+.|..||+.....
T Consensus      1106 ~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~ 1185 (1431)
T KOG1240|consen 1106 MCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD 1185 (1431)
T ss_pred             eccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh
Confidence            9999999999999999999998762  11110  001  11222234445665544434678888889999999988776


Q ss_pred             eEEec--CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCC-CCeeEEEECc---CCCEEEEEecCC
Q 001163          500 QYIFE--GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG-HSSTMMAYSA---DGARLFSCGTNK  573 (1134)
Q Consensus       500 ~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~---~~~~l~~~~~~~  573 (1134)
                      ..+++  -..+.|++++.++.  ++++++|+..|.+.+||++-.........+. .++..+..+|   .....++++.. 
T Consensus      1186 ~w~lk~~~~hG~vTSi~idp~--~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~- 1262 (1431)
T KOG1240|consen 1186 AWRLKNQLRHGLVTSIVIDPW--CNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSS- 1262 (1431)
T ss_pred             HHhhhcCccccceeEEEecCC--ceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEeccc-
Confidence            66554  24578999998654  4799999999999999999777666554432 3677666655   34566666542 


Q ss_pred             CCCeEEEEEeCCCCeeEEEecCCCCC------------------ceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 001163          574 EGESYLVEWNESEGAVKRTYHGLGKR------------------SVGVVQFDTTKNRFLAAGDEFMIKFWDMDN  629 (1134)
Q Consensus       574 ~~~~~i~~wd~~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  629 (1134)
                       +.+.|.+|++.+|....++......                  .....++...+..+++|+.|..|+.||...
T Consensus      1263 -~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1263 -SNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred             -CCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence             3556999999999776666443110                  112234444567899999999999999743

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=2.7e-13  Score=144.05  Aligned_cols=289  Identities=13%  Similarity=0.155  Sum_probs=211.6

Q ss_pred             eeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc
Q 001163          348 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS  427 (1134)
Q Consensus       348 ~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  427 (1134)
                      ++++.|++...-+.|..||||+|++|+|..--.|++||+.+-.+...+.                   -....|.-.-.|
T Consensus        43 eLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERh-------------------lDae~V~feiLs  103 (703)
T KOG2321|consen   43 ELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERH-------------------LDAEVVDFEILS  103 (703)
T ss_pred             HHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeec-------------------ccccceeEEEec
Confidence            4567788999999999999999999999999999999998755432111                   012345555566


Q ss_pred             CCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCC
Q 001163          428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE  507 (1134)
Q Consensus       428 pd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~  507 (1134)
                      .|-..++.-..|.+|.+..-. |.....  .+.   ..-..++++.-...  |+.++....|+-.+++.|+.+..|....
T Consensus       104 DD~SK~v~L~~DR~IefHak~-G~hy~~--RIP---~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~  175 (703)
T KOG2321|consen  104 DDYSKSVFLQNDRTIEFHAKY-GRHYRT--RIP---KFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDS  175 (703)
T ss_pred             cchhhheEeecCceeeehhhc-Ceeeee--ecC---cCCccccccCCCcc--EEEeecCcceEEEEcccccccccccccc
Confidence            676677777778777665432 211110  111   11234555544443  4555555678999999999999998888


Q ss_pred             cCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCC------CC-----CeeEEEECcCCCEEEEEecCCCCC
Q 001163          508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP------GH-----SSTMMAYSADGARLFSCGTNKEGE  576 (1134)
Q Consensus       508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------~~-----~v~~~~~s~~~~~l~~~~~~~~~~  576 (1134)
                      +.++++.+++..  .+|++|+.+|.|.+||.+.......+...      .+     .|+++.|+.+|-.+++|...    
T Consensus       176 ~~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~----  249 (703)
T KOG2321|consen  176 GELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTST----  249 (703)
T ss_pred             ccceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccC----
Confidence            999999887655  68999999999999998876554443221      11     58999999999999998754    


Q ss_pred             eEEEEEeCCCCeeEEEecCCCCCceEEEEEcCC--CCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCC
Q 001163          577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTT--KNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG  654 (1134)
Q Consensus       577 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~  654 (1134)
                      +.+.+||+++.+++..-.....-+|..+.|.+.  ++.+++. +...++|||-.+|+....+..   ...++.+++-|++
T Consensus       250 G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp---t~~lND~C~~p~s  325 (703)
T KOG2321|consen  250 GSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP---TSDLNDFCFVPGS  325 (703)
T ss_pred             CcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc---cCCcCceeeecCC
Confidence            459999999998877655544557888888765  3445544 457899999999999998865   3458999999999


Q ss_pred             cEEEEEECCCcEEEEEccC
Q 001163          655 ILLAVSTNDNGIKILANAD  673 (1134)
Q Consensus       655 ~~l~~~~~dg~i~iw~~~~  673 (1134)
                      .+++++-+++.+..|-+..
T Consensus       326 Gm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  326 GMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             ceEEEecCCCcceeEEccc
Confidence            9999999998888776654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.57  E-value=1.9e-10  Score=119.86  Aligned_cols=145  Identities=12%  Similarity=0.038  Sum_probs=109.1

Q ss_pred             ccccEEEEEEecCCceeeeeccCC-eEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcC
Q 001163          775 TAMRVSRLIYTNSGLAILALASNA-VHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSK  853 (1134)
Q Consensus       775 ~~~~i~~l~~spdg~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~  853 (1134)
                      +...|.-..+.-+++.++.+..|| .+-||+..                      +++.....    ..-+.|.++..++
T Consensus       358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~----------------------~~e~kr~e----~~lg~I~av~vs~  411 (668)
T COG4946         358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD----------------------GGEVKRIE----KDLGNIEAVKVSP  411 (668)
T ss_pred             CCCceEEEEEccCCcceEEeccCCceEEEEecC----------------------CceEEEee----CCccceEEEEEcC
Confidence            444566666777777788888888 77777544                      44333221    1457899999999


Q ss_pred             CCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC----cEEEEEcccceEEEeccCccC
Q 001163          854 NDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDS----SIQIYNVRVDEVKTKLKGHQK  928 (1134)
Q Consensus       854 dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg----~i~iwd~~~~~~~~~l~~h~~  928 (1134)
                      ||++++++. ...|.+.|++++.....-+...+-|+.++|+| +++++|.+--+|    .|+++|+.+++....-. ..+
T Consensus       412 dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta  489 (668)
T COG4946         412 DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTA  489 (668)
T ss_pred             CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC-Ccc
Confidence            999999998 47899999999987766666778899999999 999999988776    79999999888654322 223


Q ss_pred             ceEEEEEeeCCCEEEEEeC
Q 001163          929 RITGLAFSNTLNVLVSSGA  947 (1134)
Q Consensus       929 ~V~~l~~s~d~~~l~s~s~  947 (1134)
                      .=.+-+|.||+++|.--+.
T Consensus       490 ~DfsPaFD~d~ryLYfLs~  508 (668)
T COG4946         490 YDFSPAFDPDGRYLYFLSA  508 (668)
T ss_pred             cccCcccCCCCcEEEEEec
Confidence            3346689999999886553

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.57  E-value=1e-08  Score=125.98  Aligned_cols=534  Identities=11%  Similarity=0.104  Sum_probs=300.1

Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCEEEEE----EccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEE
Q 001163          416 DYTASVNRVMWSPDGTLFGVAYSKHIVHLY----TYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV  491 (1134)
Q Consensus       416 ~h~~~V~~l~~spd~~~las~s~dg~v~iw----d~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i  491 (1134)
                      ...+.|.++.|-++...++.+..+|.|.+.    +..+.. +.   ....-+..|.+++||||+.  +|+....++++.+
T Consensus        73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~  146 (928)
T PF04762_consen   73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLL  146 (928)
T ss_pred             CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEE
Confidence            345799999999999999999999999999    544433 22   2334567899999999999  5666666777776


Q ss_pred             EECCCCceeE------------------------EecC------------------------CCcCEEEEeccccCCccE
Q 001163          492 WDAVTGTKQY------------------------IFEG------------------------HESPVYSICPHHKENIQF  523 (1134)
Q Consensus       492 wd~~~~~~~~------------------------~~~~------------------------h~~~v~~~~~~~~~~~~~  523 (1134)
                      -+ .+...+.                        .|.|                        +...-..|  ++.+||.+
T Consensus       147 mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~I--SWRGDG~y  223 (928)
T PF04762_consen  147 MT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRI--SWRGDGEY  223 (928)
T ss_pred             Ee-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEE--EECCCCcE
Confidence            54 2211111                        1111                        11122234  44788899


Q ss_pred             EEEecC---C---CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecC--
Q 001163          524 IFSTAT---D---GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG--  595 (1134)
Q Consensus       524 l~s~s~---d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~--  595 (1134)
                      +++.+.   .   +.+|||+-+ +.....-+...+--.+++|.|.|+++++... ......|.+|. ++|-....|..  
T Consensus       224 FAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~~VvFfE-rNGLrhgeF~l~~  300 (928)
T PF04762_consen  224 FAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRHDVVFFE-RNGLRHGEFTLRF  300 (928)
T ss_pred             EEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCcEEEEEe-cCCcEeeeEecCC
Confidence            988764   2   569999865 3322222222333457899999999999875 23345566666 44544444433  


Q ss_pred             -CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEE--EecCCCCCCcceEEEcCC-CcEEEEEECCCcEEEEEc
Q 001163          596 -LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLAS--IDADGGLQASPCIRFNKE-GILLAVSTNDNGIKILAN  671 (1134)
Q Consensus       596 -~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~v~~v~~sp~-~~~l~~~~~dg~i~iw~~  671 (1134)
                       .....+..+.|++|+..|+..-.|. |.+|...+...-.+  +.... ...+..+.|+|. ...|...+.+|.+..++.
T Consensus       301 ~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~-~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  301 DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS-SESVNFVKWDPEKPLRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             CCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC-CCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence             2344789999999999999987655 99999887764332  22211 234556999994 456777777788877664


Q ss_pred             cCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccccccccccc
Q 001163          672 ADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKS  751 (1134)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  751 (1134)
                      .-.     ...+....                                                 ++....+..-...++
T Consensus       379 ~~~-----v~~s~~~~-------------------------------------------------~~D~g~vaVIDG~~l  404 (928)
T PF04762_consen  379 AWD-----VSRSPGSS-------------------------------------------------PNDNGTVAVIDGNKL  404 (928)
T ss_pred             EEE-----EEecCCCC-------------------------------------------------ccCceEEEEEeCCeE
Confidence            321     11010000                                                 000001111111234


Q ss_pred             ceeeecccCCccce--eccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCC
Q 001163          752 RIWKLTEITEPSQC--RSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPS  829 (1134)
Q Consensus       752 ~iw~~~~~~~~~~~--~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~  829 (1134)
                      .+-.+.....+...  ..+.     -...|..++|++++..+++...||.+.+|.++.............     .....
T Consensus       405 llTpf~~a~VPPPMs~~~l~-----~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~-----~~~~~  474 (928)
T PF04762_consen  405 LLTPFRRAVVPPPMSSYELE-----LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLL-----SSISL  474 (928)
T ss_pred             EEecccccCCCchHhceEEc-----CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchh-----hhccc
Confidence            44333332222222  2222     246899999999999899999999999998765422110000000     00000


Q ss_pred             CcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-C---CeEEEEEccCCe---EEEEecCCCCCeEEEEEcCCCCcEEEE
Q 001163          830 GILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFK---TMTTFMPPPPAATFLAFHPQDNNIIAI  902 (1134)
Q Consensus       830 ~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-d---g~i~lwd~~~~~---~~~~~~~~~~~v~~l~~sp~~~~~la~  902 (1134)
                      .........  .....+..++|..+..+++... +   ..+.+++....+   .+.......+.+..+...+ +...++.
T Consensus       475 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  551 (928)
T PF04762_consen  475 DSMDISDSE--LPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP-DSGSLYI  551 (928)
T ss_pred             ccccccccc--cccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-CCcEEEE
Confidence            000000000  1345678889988887777665 3   458888874332   3333333445565666665 4445777


Q ss_pred             EeCCCcEEEEEcccceE-EEeccCccCceEEEEEeeCCC---EEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCC
Q 001163          903 GMEDSSIQIYNVRVDEV-KTKLKGHQKRITGLAFSNTLN---VLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASAL  978 (1134)
Q Consensus       903 g~~dg~i~iwd~~~~~~-~~~l~~h~~~V~~l~~s~d~~---~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  978 (1134)
                      -..+|.+...+...... +..|..-...+ .+....+..   .++.-+..|.+++   .. .     .+.         .
T Consensus       552 q~~~G~v~~~~~~~~~~~~~~fp~~c~~~-~~~~~~~~~~~~~~~GLs~~~~Ly~---n~-~-----~la---------~  612 (928)
T PF04762_consen  552 QTNDGKVFQLSSDGELSQIVKFPQPCPWM-EVCQINGSEDKRVLFGLSSNGRLYA---NS-R-----LLA---------S  612 (928)
T ss_pred             EECCCEEEEeecCCCccccccCCCCCcEE-EEEEECCccceeEEEEECCCCEEEE---CC-E-----EEe---------c
Confidence            77899888666554321 22333222222 222222322   4444455554443   11 1     111         2


Q ss_pred             CceEEEEcCCCCEEE-EEeeceEEEEeCCC-cccceeeccCC----CccCEEEEEEccCCCEEEEEecCCcEEEeecCCC
Q 001163          979 ADTRVQFHLDQTHLL-AVHETQIAIYEAPK-LECLKQFVPRE----ASGPITHATYSCDSQSIYVAFEEGSVGVLTASTL 1052 (1134)
Q Consensus       979 ~v~~l~fs~dg~~l~-~~~d~~i~iwd~~~-~~~~~~~~~~~----h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~ 1052 (1134)
                      .+++.++.  +.+|+ +.....+++.++.. .+.+.... ..    +...+   .--..|..|+++-...+=.|..+..|
T Consensus       613 ~~tSF~v~--~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~-~~~~~~~de~~---R~VERGsriVt~vp~~~~vVLQmPRG  686 (928)
T PF04762_consen  613 NCTSFAVT--DSFLLFTTTQHTLKFVHLNSSVEDLEIPP-DSPENSYDERC---RRVERGSRIVTAVPSDTSVVLQMPRG  686 (928)
T ss_pred             CCceEEEE--cCEEEEEecCceEEEEECcCchhhccccc-Ccccccccccc---ccCccCCEEEEEeCCCceEEEEcCCC
Confidence            35666663  34444 46778899999881 11111111 01    11122   23357888888877667777888888


Q ss_pred             cce
Q 001163         1053 RLR 1055 (1134)
Q Consensus      1053 ~~~ 1055 (1134)
                      .+.
T Consensus       687 NLE  689 (928)
T PF04762_consen  687 NLE  689 (928)
T ss_pred             chh
Confidence            763

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.56  E-value=1.9e-14  Score=148.89  Aligned_cols=288  Identities=15%  Similarity=0.158  Sum_probs=221.7

Q ss_pred             CCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEE
Q 001163          357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA  436 (1134)
Q Consensus       357 ~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~  436 (1134)
                      .+-..+.|+.+|++| +.|+.-|.|..+|+.++++....                    .-...|.++.|-.+.+++|++
T Consensus       130 FGPY~~~ytrnGrhl-llgGrKGHlAa~Dw~t~~L~~Ei--------------------~v~Etv~Dv~~LHneq~~AVA  188 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHL-LLGGRKGHLAAFDWVTKKLHFEI--------------------NVMETVRDVTFLHNEQFFAVA  188 (545)
T ss_pred             cCCeeeeecCCccEE-EecCCccceeeeecccceeeeee--------------------ehhhhhhhhhhhcchHHHHhh
Confidence            345689999999976 57788899999999999876542                    134578899999999999998


Q ss_pred             eCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEecc
Q 001163          437 YSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPH  516 (1134)
Q Consensus       437 s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~  516 (1134)
                      -. ..+.|||-.. ..+.+   +..| ..|..+.|.|---  +|++++..|.++.-|+.+|+.+..+..-.+.+..++-+
T Consensus       189 QK-~y~yvYD~~G-tElHC---lk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN  260 (545)
T KOG1272|consen  189 QK-KYVYVYDNNG-TELHC---LKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN  260 (545)
T ss_pred             hh-ceEEEecCCC-cEEee---hhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcC
Confidence            54 4599999654 44553   4434 4589999999876  89999999999999999999999998888888888876


Q ss_pred             ccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCC
Q 001163          517 HKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL  596 (1134)
Q Consensus       517 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~  596 (1134)
                      |.+  ..+-+|..+|+|.+|.....+....+..|.++|.++++.++|+++++.+.|.    .+.|||++....+.++...
T Consensus       261 P~N--aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr----~~kIWDlR~~~ql~t~~tp  334 (545)
T KOG1272|consen  261 PYN--AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDR----KVKIWDLRNFYQLHTYRTP  334 (545)
T ss_pred             Ccc--ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccccc----ceeEeeeccccccceeecC
Confidence            654  6888999999999999999999999999999999999999999999998755    5999999998877766652


Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEE-cCCCc--eeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccC
Q 001163          597 GKRSVGVVQFDTTKNRFLAAGDEFMIKFWD-MDNVN--LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD  673 (1134)
Q Consensus       597 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~--~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~  673 (1134)
                      .  ....+++|..|  +++.+....|.||. .-.+.  .-..+-.|.....|..+.|.|-...|..|...|.-.+.-...
T Consensus       335 ~--~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGs  410 (545)
T KOG1272|consen  335 H--PASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGS  410 (545)
T ss_pred             C--Ccccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCC
Confidence            2  56667887655  45555556899994 33322  112222233345889999999888888888877766665555


Q ss_pred             CceeEEEecc
Q 001163          674 GIRLLRTVES  683 (1134)
Q Consensus       674 ~~~~~~~~~~  683 (1134)
                      |..-...+..
T Consensus       411 GePN~Ds~e~  420 (545)
T KOG1272|consen  411 GEPNYDSLED  420 (545)
T ss_pred             CCCCcchhcc
Confidence            5444444443

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.55  E-value=6.2e-10  Score=116.08  Aligned_cols=519  Identities=13%  Similarity=0.117  Sum_probs=278.5

Q ss_pred             ceeEEEeecCCCeeEEEEcCCCCeEEEE------EeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCC
Q 001163          347 KTVVMTLNQGSAVKSMDFHPVQQILLVV------GTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTAS  420 (1134)
Q Consensus       347 ~~~~~~~~h~~~V~~v~fsp~g~~lla~------gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  420 (1134)
                      .+..+...+-+-|+...|+|+|+.++.+      +...+.+.+.+.+.|+..+..                 .+ |  ..
T Consensus        69 g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiT-----------------yf-G--r~  128 (668)
T COG4946          69 GKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRIT-----------------YF-G--RR  128 (668)
T ss_pred             CCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEE-----------------Ee-c--cc
Confidence            3445555688899999999999987552      223346788888888765421                 12 2  22


Q ss_pred             EE-EEEEcCCCCEEEEEeCCCEE----EEEEccCCce-eeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCC-------
Q 001163          421 VN-RVMWSPDGTLFGVAYSKHIV----HLYTYHGGDE-LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR-------  487 (1134)
Q Consensus       421 V~-~l~~spd~~~las~s~dg~v----~iwd~~~~~~-~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~-------  487 (1134)
                      -+ -.-|+|||+.+++...-.-.    .+|.+..... ..   .|  .-++.+.+.+- ||.   ++.|-..-       
T Consensus       129 fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e---~L--nlGpathiv~~-dg~---ivigRntydLP~WK~  199 (668)
T COG4946         129 FTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTE---PL--NLGPATHIVIK-DGI---IVIGRNTYDLPHWKG  199 (668)
T ss_pred             cceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceee---ec--cCCceeeEEEe-CCE---EEEccCcccCccccc
Confidence            33 35599999999887543222    2333332111 11   11  22344555443 342   33322111       


Q ss_pred             -----eEEEEECCCCc-e---eEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEE
Q 001163          488 -----VIKVWDAVTGT-K---QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMA  558 (1134)
Q Consensus       488 -----~i~iwd~~~~~-~---~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  558 (1134)
                           .=++|--..+. .   .-.+.+|   |++-.+.  .+ ...+....||.=.+|..+-.+.-......-..-.+-.
T Consensus       200 YkGGtrGklWis~d~g~tFeK~vdl~~~---vS~PmIV--~~-RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~  273 (668)
T COG4946         200 YKGGTRGKLWISSDGGKTFEKFVDLDGN---VSSPMIV--GE-RVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRN  273 (668)
T ss_pred             ccCCccceEEEEecCCcceeeeeecCCC---cCCceEE--cc-eEEEEecccCccceEEeccCCchhhhcCCchhccccc
Confidence                 11344322221 2   2233333   2221110  11 2333344455544554432222111110111233334


Q ss_pred             ECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecC---C--CCCc--eEE---E-EEcC-CCCEEEEEeCCCeEEEEE
Q 001163          559 YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG---L--GKRS--VGV---V-QFDT-TKNRFLAAGDEFMIKFWD  626 (1134)
Q Consensus       559 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~---~--~~~~--v~~---~-~~~~-~~~~l~~~~~dg~i~iwd  626 (1134)
                      .+.||+.++.... +    -|+++|..+.+....--+   .  ....  +.-   + .|++ +|.+++..|. |...|.+
T Consensus       274 ~nsDGkrIvFq~~-G----dIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~  347 (668)
T COG4946         274 ANSDGKRIVFQNA-G----DIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMR  347 (668)
T ss_pred             cCCCCcEEEEecC-C----cEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEEC
Confidence            5779998887532 2    299999987654332111   1  0000  110   1 1222 4677777775 6677776


Q ss_pred             cCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCC-cEEEEEccCCceeEEEeccCcccccccchhhhhcccccccc
Q 001163          627 MDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN-GIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTF  705 (1134)
Q Consensus       627 ~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  705 (1134)
                      .-.+-.++.    ++...|.-..+..+++-++.|..|| .+-|++..++.  ++.+..                      
T Consensus       348 ~~~~~~iqv----~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e--~kr~e~----------------------  399 (668)
T COG4946         348 PWDGYSIQV----GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE--VKRIEK----------------------  399 (668)
T ss_pred             CCCCeeEEc----CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce--EEEeeC----------------------
Confidence            655554443    2244577777777888889999998 89999987762  111111                      


Q ss_pred             cccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEe
Q 001163          706 GSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYT  785 (1134)
Q Consensus       706 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  785 (1134)
                                                                                           .-+.|.++..+
T Consensus       400 ---------------------------------------------------------------------~lg~I~av~vs  410 (668)
T COG4946         400 ---------------------------------------------------------------------DLGNIEAVKVS  410 (668)
T ss_pred             ---------------------------------------------------------------------CccceEEEEEc
Confidence                                                                                 34678899999


Q ss_pred             cCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CC
Q 001163          786 NSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GG  864 (1134)
Q Consensus       786 pdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg  864 (1134)
                      ++|+.++++.....+.+.|+                      .+|....++-.   ..+-|+.++|+|+++++|-+- +|
T Consensus       411 ~dGK~~vvaNdr~el~vidi----------------------dngnv~~idkS---~~~lItdf~~~~nsr~iAYafP~g  465 (668)
T COG4946         411 PDGKKVVVANDRFELWVIDI----------------------DNGNVRLIDKS---EYGLITDFDWHPNSRWIAYAFPEG  465 (668)
T ss_pred             CCCcEEEEEcCceEEEEEEe----------------------cCCCeeEeccc---ccceeEEEEEcCCceeEEEecCcc
Confidence            99999999888777776654                      44444433322   467799999999999999986 54


Q ss_pred             ----eEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEe--ccCccCceEEEE----
Q 001163          865 ----KISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTK--LKGHQKRITGLA----  934 (1134)
Q Consensus       865 ----~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~--l~~h~~~V~~l~----  934 (1134)
                          .|+++|+.+++...... ..+.-.+-+|.| ++++|..-+.-    -.|..+.+.+..  +..|..+...+-    
T Consensus       466 y~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~-d~ryLYfLs~R----sLdPs~Drv~fnf~f~~vskPylv~L~~g~  539 (668)
T COG4946         466 YYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDP-DGRYLYFLSAR----SLDPSNDRVIFNFSFQRVSKPYLVVLGRGY  539 (668)
T ss_pred             eeeeeEEEEecCCCeEEEecC-CcccccCcccCC-CCcEEEEEecc----ccCCCCCeeEEEEEEeeeccceEEEecCCC
Confidence                59999998887665543 455566788999 88888765421    122222222211  112222211110    


Q ss_pred             EeeCCCEEEE-EeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-------------E--eec
Q 001163          935 FSNTLNVLVS-SGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-------------V--HET  998 (1134)
Q Consensus       935 ~s~d~~~l~s-~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-------------~--~d~  998 (1134)
                      .||-.+..-. -+.++.+-+=++..    ....+.+.++.      -.+++=-.+|+.+..             +  .-|
T Consensus       540 ~sP~~q~p~~~~~ea~e~dle~ie~----r~eP~pVee~d------Y~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG  609 (668)
T COG4946         540 YSPFNQPPDEANSEAGEVDLEGIED----RVEPFPVEEGD------YRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKG  609 (668)
T ss_pred             CChhhcCchhcCccccceehhhhcc----cccccccCccc------eeEeeecCCCeEEEEEeeccchhhhhhcCCCccc
Confidence            1111111111 12223222222211    11122222221      122222223322211             2  347


Q ss_pred             eEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCC
Q 001163          999 QIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTAST 1051 (1134)
Q Consensus       999 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~ 1051 (1134)
                      .+.+||+++.+... +     ...++++..|+||+.+.. -.||.+++++++.
T Consensus       610 ~l~~ydletkk~~e-~-----k~nvss~rlS~D~s~ilv-k~d~kl~~f~vek  655 (668)
T COG4946         610 RLEKYDLETKKVEE-Y-----KDNVSSFRLSSDGSKILV-KLDGKLRLFDVEK  655 (668)
T ss_pred             eEEEEecchhhHHH-H-----hcccceEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence            78899998765421 1     467899999999999887 7899999999976

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.55  E-value=1.1e-12  Score=129.98  Aligned_cols=241  Identities=12%  Similarity=0.141  Sum_probs=168.2

Q ss_pred             CeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCC--eEEEEEcCCCCcEEE-EEeCC------CcEEEEEcc
Q 001163          845 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPA--ATFLAFHPQDNNIIA-IGMED------SSIQIYNVR  915 (1134)
Q Consensus       845 ~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~--v~~l~~sp~~~~~la-~g~~d------g~i~iwd~~  915 (1134)
                      ....++|+.|...++++.|...+||+++-.+.....+.+.+.  +..+-|-   .++|| +|+.+      ..|.|||-.
T Consensus         7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIWDD~   83 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWDDL   83 (346)
T ss_pred             ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEEecc
Confidence            345699999999999999988999998764433332222222  3333332   23444 44433      379999966


Q ss_pred             cceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-
Q 001163          916 VDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-  994 (1134)
Q Consensus       916 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-  994 (1134)
                      ..+++.++. ...+|.++.++++  .++..- .+.|+||.+...-.+ ...+......    .++.+++=.....+||. 
T Consensus        84 k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~-l~~~et~~NP----kGlC~~~~~~~k~~LafP  154 (346)
T KOG2111|consen   84 KERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKL-LHVIETRSNP----KGLCSLCPTSNKSLLAFP  154 (346)
T ss_pred             cCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhh-eeeeecccCC----CceEeecCCCCceEEEcC
Confidence            677777776 6788999999865  455544 567999999853321 1222222211    12333333334445555 


Q ss_pred             E-eeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCc-EEEeecCCCcceeecCCCcccCCCCCCCc
Q 001163          995 V-HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGS-VGVLTASTLRLRCRINPTAYLPTNPSLRV 1072 (1134)
Q Consensus       995 ~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~h~~~v 1072 (1134)
                      | .-|+|+|-|+...+.-......+|.+.|.+++++-+|.++||+|..|+ |||||..+|+.+..+..+.     ....|
T Consensus       155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~-----d~A~i  229 (346)
T KOG2111|consen  155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV-----DRADI  229 (346)
T ss_pred             CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC-----chheE
Confidence            5 559999999987766333334489999999999999999999999998 8999999999998887553     23456


Q ss_pred             eeEEEEecCCCCCEEEEEecCCcEEEEeCCCCC
Q 001163         1073 YPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAE 1105 (1134)
Q Consensus      1073 ~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~ 1105 (1134)
                      +.+  +|+| +..+|++.|+.|+|+|+.+....
T Consensus       230 y~i--aFSp-~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  230 YCI--AFSP-NSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             EEE--EeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence            666  8899 79999999999999999997755

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=3.5e-12  Score=145.95  Aligned_cols=237  Identities=12%  Similarity=0.113  Sum_probs=156.8

Q ss_pred             cEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeC---CCEEEEEEccCCceeeee
Q 001163          380 DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS---KHIVHLYTYHGGDELRNH  456 (1134)
Q Consensus       380 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~---dg~v~iwd~~~~~~~~~~  456 (1134)
                      .|.+||.+......                    +..+...+.+.+|||||+.||..+.   +..|.+||+.+++.. . 
T Consensus       180 ~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~-  237 (429)
T PRK03629        180 ELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-Q-  237 (429)
T ss_pred             eEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-E-
Confidence            68888887654322                    3446678999999999999997643   457999999887632 2 


Q ss_pred             eeeecCCCCEEEEEEecCCCceEEEEEeCCC--eEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecC-CCcE
Q 001163          457 LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--VIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT-DGKI  533 (1134)
Q Consensus       457 ~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i  533 (1134)
                        +....+.+..++|+|||+. ++++.+.++  .|.+||+.+++..... .+...+....|++  ||+.|+..+. ++..
T Consensus       238 --l~~~~~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wSP--DG~~I~f~s~~~g~~  311 (429)
T PRK03629        238 --VASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFP--DSQNLAYTSDQAGRP  311 (429)
T ss_pred             --ccCCCCCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEEEcc-CCCCCcCceEECC--CCCEEEEEeCCCCCc
Confidence              2223333556899999995 233434444  5899999888765443 3445566777755  5576765554 4555


Q ss_pred             EEE--ecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCC
Q 001163          534 KAW--LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN  611 (1134)
Q Consensus       534 ~vw--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  611 (1134)
                      .+|  |+..+.. ..+...........|+|||++++..+.+. +...|.+||+.+++........   ......|+|||+
T Consensus       312 ~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~-g~~~I~~~dl~~g~~~~Lt~~~---~~~~p~~SpDG~  386 (429)
T PRK03629        312 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGGVQVLTDTF---LDETPSIAPNGT  386 (429)
T ss_pred             eEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccC-CCceEEEEECCCCCeEEeCCCC---CCCCceECCCCC
Confidence            555  5544332 33333444566789999999998876543 3456999999888654332221   234578999999


Q ss_pred             EEEEEeCCCe---EEEEEcCCCceeEEEecCCCCCCcceEEEcC
Q 001163          612 RFLAAGDEFM---IKFWDMDNVNLLASIDADGGLQASPCIRFNK  652 (1134)
Q Consensus       612 ~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp  652 (1134)
                      .|+..+.++.   ++++++. |.....+..+  ...+...+|+|
T Consensus       387 ~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~--~~~~~~p~Wsp  427 (429)
T PRK03629        387 MVIYSSSQGMGSVLNLVSTD-GRFKARLPAT--DGQVKFPAWSP  427 (429)
T ss_pred             EEEEEEcCCCceEEEEEECC-CCCeEECccC--CCCcCCcccCC
Confidence            9999886654   6777874 5555556543  44677888887

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=5.2e-12  Score=137.20  Aligned_cols=518  Identities=12%  Similarity=0.107  Sum_probs=306.1

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCce------------eeeeeeeecCCCCEEEEEEecCCCceEEEEEe
Q 001163          417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDE------------LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG  484 (1134)
Q Consensus       417 h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~------------~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s  484 (1134)
                      ......|++|+....|+|+|+.||.++|..+.+...            +..-.++.||.+.|.-+.|+.+.+  .|-|..
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSD   90 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSD   90 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccC
Confidence            446788999999999999999999999998865321            111235789999999999998887  688999


Q ss_pred             CCCeEEEEECCCCceeEEec--CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcC
Q 001163          485 EDRVIKVWDAVTGTKQYIFE--GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSAD  562 (1134)
Q Consensus       485 ~d~~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~  562 (1134)
                      .+|.|.+|-+-.|.-...+.  ...+-|.+++|+  .+|..+.....||.|.+=.++ +..+.-....+.....+.|++|
T Consensus        91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn--~dG~kIcIvYeDGavIVGsvd-GNRIwgKeLkg~~l~hv~ws~D  167 (1189)
T KOG2041|consen   91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWN--LDGTKICIVYEDGAVIVGSVD-GNRIWGKELKGQLLAHVLWSED  167 (1189)
T ss_pred             CCceEEEEeeecccHHHHHhhCcCccEEEEEEEc--CCCcEEEEEEccCCEEEEeec-cceecchhcchheccceeeccc
Confidence            99999999988886554332  345668888884  566889999999998776655 2333333333445567889999


Q ss_pred             CCEEEEEecCCCCCeEEEEEeCCCC-------eeEEEecCC---CCCceEEEEE--------cCCCCEEEEEeCCCeEEE
Q 001163          563 GARLFSCGTNKEGESYLVEWNESEG-------AVKRTYHGL---GKRSVGVVQF--------DTTKNRFLAAGDEFMIKF  624 (1134)
Q Consensus       563 ~~~l~~~~~~~~~~~~i~~wd~~~~-------~~~~~~~~~---~~~~v~~~~~--------~~~~~~l~~~~~dg~i~i  624 (1134)
                      .+.++.+-.+    +..+++|.+..       .+.....+.   ....+..+.|        -|+...++.+-.+|.+.|
T Consensus       168 ~~~~Lf~~an----ge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi  243 (1189)
T KOG2041|consen  168 LEQALFKKAN----GETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI  243 (1189)
T ss_pred             HHHHHhhhcC----CcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence            9888776543    34888886532       111111110   0112334444        357789999999999998


Q ss_pred             EEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhccccccc
Q 001163          625 WDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGT  704 (1134)
Q Consensus       625 wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  704 (1134)
                      -.-.+......+..   ...+....|+++|..|++++.+..--- +..+.                              
T Consensus       244 MR~eND~~Pvv~dt---gm~~vgakWnh~G~vLAvcG~~~da~~-~~d~n------------------------------  289 (1189)
T KOG2041|consen  244 MRSENDPEPVVVDT---GMKIVGAKWNHNGAVLAVCGNDSDADE-PTDSN------------------------------  289 (1189)
T ss_pred             hhhcCCCCCeEEec---ccEeecceecCCCcEEEEccCcccccC-ccccc------------------------------
Confidence            76555443333332   235778999999999999887632100 00000                              


Q ss_pred             ccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEE
Q 001163          705 FGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIY  784 (1134)
Q Consensus       705 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  784 (1134)
                                                                   .|.++..-    .....++..    ....|+++.|
T Consensus       290 ---------------------------------------------~v~Fysp~----G~i~gtlkv----pg~~It~lsW  316 (1189)
T KOG2041|consen  290 ---------------------------------------------KVHFYSPY----GHIVGTLKV----PGSCITGLSW  316 (1189)
T ss_pred             ---------------------------------------------eEEEeccc----hhheEEEec----CCceeeeeEE
Confidence                                                         00000000    000111111    2355666666


Q ss_pred             ecCCceeeeeccCCeEEeeecCCC----------CCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC
Q 001163          785 TNSGLAILALASNAVHKLWKWPRN----------ERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN  854 (1134)
Q Consensus       785 spdg~~l~~~~~dg~i~vw~~~~~----------~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d  854 (1134)
                      -..|-.++.+- |+.|.+=++...          .+.-.+.......+.+||..+.+.....      -....+++++.+
T Consensus       317 Eg~gLriA~Av-dsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~------V~~~~~~a~~~e  389 (1189)
T KOG2041|consen  317 EGTGLRIAIAV-DSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKT------VTHFENMAFYRE  389 (1189)
T ss_pred             cCCceEEEEEe-cceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhh------hcceeehheecc
Confidence            66665544333 334433222211          0000111122224567787776544332      233456777766


Q ss_pred             CCeEEEee-CCeEEEEEc-cCCeEEEEec-----C--CCC---CeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceE---
Q 001163          855 DSYVMSAS-GGKISLFNM-MTFKTMTTFM-----P--PPP---AATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEV---  919 (1134)
Q Consensus       855 g~~la~~s-dg~i~lwd~-~~~~~~~~~~-----~--~~~---~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~---  919 (1134)
                      --.|+.-. ++.|.-++. ++...+..+.     +  -+.   .|.-.-..- ++..++.++.+ .+.+|.....+.   
T Consensus       390 hCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~v-n~~~vviAS~e-~~~iWhy~~pK~~s~  467 (1189)
T KOG2041|consen  390 HCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCV-NGICVVIASEE-RYFIWHYVLPKFNSV  467 (1189)
T ss_pred             cEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEe-cceEEEEeccc-cEEEEEEeccchhhh
Confidence            65666555 566655422 1211111110     0  011   111111111 55677777766 578887532110   


Q ss_pred             -----------------------------EEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeec
Q 001163          920 -----------------------------KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIP  970 (1134)
Q Consensus       920 -----------------------------~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~  970 (1134)
                                                   ..++.|-.++|.+++.|  .++|..+-..|.|.-+++......     +..
T Consensus       468 l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~-----n~y  540 (1189)
T KOG2041|consen  468 LAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLT-----NSY  540 (1189)
T ss_pred             hhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeee-----ecc
Confidence                                         13344566788888876  578888989999999999874321     111


Q ss_pred             CCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCC---CcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEE
Q 001163          971 NGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAP---KLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGV 1046 (1134)
Q Consensus       971 ~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~---~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~v 1046 (1134)
                      .-    ...+.++++.-....+++ -.-|.+.+.|+.   +|..+..+.. .....|+.+.|..|+..|++--+...+.|
T Consensus       541 ~~----n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~-~errDVWd~~Wa~dNp~llAlmeKtrmyi  615 (1189)
T KOG2041|consen  541 PV----NPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYT-SERRDVWDYEWAQDNPNLLALMEKTRMYI  615 (1189)
T ss_pred             cc----CchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeeh-hhhhhhhhhhhccCCchHHhhhhhceEEE
Confidence            11    134777888777777777 456778888776   3444443332 23568899999888887776666666777


Q ss_pred             eecCC
Q 001163         1047 LTAST 1051 (1134)
Q Consensus      1047 wd~~~ 1051 (1134)
                      ++-.+
T Consensus       616 frgnd  620 (1189)
T KOG2041|consen  616 FRGND  620 (1189)
T ss_pred             ecCcC
Confidence            77443

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.53  E-value=6.5e-13  Score=140.19  Aligned_cols=118  Identities=24%  Similarity=0.401  Sum_probs=106.1

Q ss_pred             CCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEE
Q 001163          843 EDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKT  921 (1134)
Q Consensus       843 ~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~  921 (1134)
                      .+.|...+|+|||++||+.+ ||.+||||..+.+++..++.-.+...|++||| ||++|++|++|.-|.||.+..++++.
T Consensus       290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVA  368 (636)
T KOG2394|consen  290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVA  368 (636)
T ss_pred             cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEE
Confidence            45788999999999999999 99999999999998888887789999999999 99999999999999999999999999


Q ss_pred             eccCccCceEEEEEee-------------------------------C-----------------CCEEEEEeCCCcEEE
Q 001163          922 KLKGHQKRITGLAFSN-------------------------------T-----------------LNVLVSSGADSQLCV  953 (1134)
Q Consensus       922 ~l~~h~~~V~~l~~s~-------------------------------d-----------------~~~l~s~s~Dg~i~i  953 (1134)
                      .=++|.+-|..|+|.|                               +                 .-++.|.+.|.++.+
T Consensus       369 RGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcL  448 (636)
T KOG2394|consen  369 RGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCL  448 (636)
T ss_pred             eccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEE
Confidence            9999999999999972                               0                 124778899999999


Q ss_pred             EECCCCcc
Q 001163          954 WSTDGWEK  961 (1134)
Q Consensus       954 wd~~~~~~  961 (1134)
                      ||+.....
T Consensus       449 WDlteD~L  456 (636)
T KOG2394|consen  449 WDLTEDVL  456 (636)
T ss_pred             Eecchhhc
Confidence            99987553

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=1.8e-13  Score=144.27  Aligned_cols=239  Identities=12%  Similarity=0.190  Sum_probs=164.9

Q ss_pred             ecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC--CCC
Q 001163          354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGT  431 (1134)
Q Consensus       354 ~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~~  431 (1134)
                      +|.+-|+|++|+.||. +|++||.|-.+.|||.-..+.++.                  +-+||...|.|+.|-|  +.+
T Consensus        48 GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFvP~tnnr  108 (758)
T KOG1310|consen   48 GHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFVPYTNNR  108 (758)
T ss_pred             cccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeeeccCCCe
Confidence            4999999999999999 779999999999999987766653                  3589999999999999  678


Q ss_pred             EEEEEeCCCEEEEEEccCCce-------eeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCcee----
Q 001163          432 LFGVAYSKHIVHLYTYHGGDE-------LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ----  500 (1134)
Q Consensus       432 ~las~s~dg~v~iwd~~~~~~-------~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~----  500 (1134)
                      .+++|..|..|+++|+...+.       ..+...+..|...|.-++-.|++.. .+.+++.||+|+-+|++.....    
T Consensus       109 iv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~p~~  187 (758)
T KOG1310|consen  109 IVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCNPDE  187 (758)
T ss_pred             EEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCCccc
Confidence            999999999999999985221       1223346679999999999999966 7999999999999999863211    


Q ss_pred             ---E---EecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeee-----cCCCCCeeEEE-ECcCCCEEEE
Q 001163          501 ---Y---IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY-----DAPGHSSTMMA-YSADGARLFS  568 (1134)
Q Consensus       501 ---~---~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-----~~~~~~v~~~~-~s~~~~~l~~  568 (1134)
                         .   .+...--...++.++|... .+|+.|+.|-..++||.+.......-     ..+.....++. |+|.+-    
T Consensus       188 ~~~~~l~ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl----  262 (758)
T KOG1310|consen  188 DCPSILVNYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL----  262 (758)
T ss_pred             cccHHHHHhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc----
Confidence               1   1111223456777777654 79999999999999995422111110     00011111221 233221    


Q ss_pred             EecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEE
Q 001163          569 CGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASI  636 (1134)
Q Consensus       569 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  636 (1134)
                      ..              ..+......     ..++-+.|+|+|.-|+..-..-.|+++|+..++....+
T Consensus       263 kn--------------~~gn~~~~~-----~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  263 KN--------------SQGNLDRYI-----TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             cC--------------cccccccce-----eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence            00              001000000     13566889999977776655568999999888766554

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.51  E-value=1.3e-11  Score=129.95  Aligned_cols=286  Identities=15%  Similarity=0.119  Sum_probs=192.1

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la  434 (1134)
                      ..-.+..++|||.|++| ++.. -..|.+|.-.....+..                     -....|..+.|||.++||.
T Consensus        31 ~~~p~~~~~~SP~G~~l-~~~~-~~~V~~~~g~~~~~l~~---------------------~~~~~V~~~~fSP~~kYL~   87 (561)
T COG5354          31 ENWPVAYVSESPLGTYL-FSEH-AAGVECWGGPSKAKLVR---------------------FRHPDVKYLDFSPNEKYLV   87 (561)
T ss_pred             cCcchhheeecCcchhe-ehhh-ccceEEccccchhheee---------------------eecCCceecccCcccceee
Confidence            34578899999999965 4433 34599999887765432                     1234799999999999999


Q ss_pred             EEeCCC---------------EEEEEEccCCceeeeeeeeecCCCC--EE-EEEEecCCCceEEEEEeCCCeEEEEECCC
Q 001163          435 VAYSKH---------------IVHLYTYHGGDELRNHLEIEAHVGS--VN-DLAFSYPNKQLSVVTCGEDRVIKVWDAVT  496 (1134)
Q Consensus       435 s~s~dg---------------~v~iwd~~~~~~~~~~~~l~~h~~~--V~-~v~~s~~~~~~~l~s~s~d~~i~iwd~~~  496 (1134)
                      +-+..+               .+.+||+.+|..+.   .+.+...+  .+ -+.|+-+++  +++-- ....++|+++ +
T Consensus        88 tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~---sf~~~~q~~~~Wp~~k~s~~D~--y~ARv-v~~sl~i~e~-t  160 (561)
T COG5354          88 TWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVF---SFNGISQPYLGWPVLKFSIDDK--YVARV-VGSSLYIHEI-T  160 (561)
T ss_pred             eeccCCccChhhccCCccccCceeEEeccCceeEe---eccccCCcccccceeeeeecch--hhhhh-ccCeEEEEec-C
Confidence            976543               39999999998766   44444444  45 688999888  34333 3357999997 4


Q ss_pred             Ccee-EEecCC-CcCEEEEeccccCCccEEEE-----ecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEE
Q 001163          497 GTKQ-YIFEGH-ESPVYSICPHHKENIQFIFS-----TATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSC  569 (1134)
Q Consensus       497 ~~~~-~~~~~h-~~~v~~~~~~~~~~~~~l~s-----~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  569 (1134)
                      +..- ..+..- ...|....|+|.+++..|+.     .+.++++++|.+.....+.....-...-..+.|.+.|+++++-
T Consensus       161 ~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l  240 (561)
T COG5354         161 DNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVL  240 (561)
T ss_pred             CccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEE
Confidence            4322 222211 24566677777766666554     4567889999988555444433333344578899999987654


Q ss_pred             ecC-----C--CCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe--CCCeEEEEEcCCCceeEEEecCC
Q 001163          570 GTN-----K--EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG--DEFMIKFWDMDNVNLLASIDADG  640 (1134)
Q Consensus       570 ~~~-----~--~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~  640 (1134)
                      ...     +  -++..++++++....+.... .. .++|...+|.|.++.+++.+  .+..+.++|++.. ....+.   
T Consensus       241 ~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~-~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P---  314 (561)
T COG5354         241 VMTHTKSNKSYFGESNLYLLRITERSIPVEK-DL-KDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP---  314 (561)
T ss_pred             EEEeeecccceeccceEEEEeecccccceec-cc-cccceeeeecccCCceeEEecccccceeecccccc-eEEecC---
Confidence            321     1  12356888888744333322 22 34899999999998877765  7788999999876 433333   


Q ss_pred             CCCCcceEEEcCCCcEEEEEECC---CcEEEEEccCCcee
Q 001163          641 GLQASPCIRFNKEGILLAVSTND---NGIKILANADGIRL  677 (1134)
Q Consensus       641 ~~~~v~~v~~sp~~~~l~~~~~d---g~i~iw~~~~~~~~  677 (1134)
                       ...=+.+.|+|.+++++.++-|   |.+.+|+.......
T Consensus       315 -e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~  353 (561)
T COG5354         315 -EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKV  353 (561)
T ss_pred             -CcccccccccCcccEEEEecCCccccceEEeccCCceEE
Confidence             2234678999999999987765   67888887665333

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=9.6e-12  Score=143.52  Aligned_cols=237  Identities=12%  Similarity=0.026  Sum_probs=160.5

Q ss_pred             CcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeC---CCEEEEEEccCCceeee
Q 001163          379 GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS---KHIVHLYTYHGGDELRN  455 (1134)
Q Consensus       379 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~---dg~v~iwd~~~~~~~~~  455 (1134)
                      ..|.+||.+......                    +..|...+.+.+|||||+.|+..+.   +..|.+||+.+++..  
T Consensus       182 ~~l~~~d~dg~~~~~--------------------lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~--  239 (435)
T PRK05137        182 KRLAIMDQDGANVRY--------------------LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE--  239 (435)
T ss_pred             eEEEEECCCCCCcEE--------------------EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence            368888886554322                    4568889999999999999998764   468999999988643  


Q ss_pred             eeeeecCCCCEEEEEEecCCCceEEEEEeCCCe--EEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEec-CCC-
Q 001163          456 HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV--IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA-TDG-  531 (1134)
Q Consensus       456 ~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~--i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg-  531 (1134)
                        .+..+.+.+...+|+|||+. ++++.+.++.  |.+||+.+++. ..+..+........|++  ||..|+..+ .+| 
T Consensus       240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~sp--DG~~i~f~s~~~g~  313 (435)
T PRK05137        240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSP--DGSQIVFESDRSGS  313 (435)
T ss_pred             --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcC--CCCEEEEEECCCCC
Confidence              25556777889999999995 3456666654  77789887765 44555665566677754  557676655 333 


Q ss_pred             -cEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCC
Q 001163          532 -KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK  610 (1134)
Q Consensus       532 -~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~  610 (1134)
                       .|.+||+...... .+......+....|+|||+.|+....+. +...|.+||+..+.. +.+... . .+....|+|||
T Consensus       314 ~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ia~~~~~~-~~~~i~~~d~~~~~~-~~lt~~-~-~~~~p~~spDG  388 (435)
T PRK05137        314 PQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLIAFTKQGG-GQFSIGVMKPDGSGE-RILTSG-F-LVEGPTWAPNG  388 (435)
T ss_pred             CeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEEEEEEcCC-CceEEEEEECCCCce-EeccCC-C-CCCCCeECCCC
Confidence             5777787654433 3333344566788999999998876532 346799999866543 333221 1 35678899999


Q ss_pred             CEEEEEeCC------CeEEEEEcCCCceeEEEecCCCCCCcceEEEcC
Q 001163          611 NRFLAAGDE------FMIKFWDMDNVNLLASIDADGGLQASPCIRFNK  652 (1134)
Q Consensus       611 ~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp  652 (1134)
                      +.|+..+.+      ..++++|+..+.. ..+..   ...+...+|+|
T Consensus       389 ~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~---~~~~~~p~Wsp  432 (435)
T PRK05137        389 RVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPT---PGDASDPAWSP  432 (435)
T ss_pred             CEEEEEEccCCCCCcceEEEEECCCCce-EEccC---CCCccCcccCC
Confidence            988776532      3688888876654 34432   22356677776

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=3.4e-12  Score=135.81  Aligned_cols=197  Identities=11%  Similarity=0.191  Sum_probs=157.7

Q ss_pred             eEEEEc-CCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEecc-
Q 001163          847 PCFALS-KNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK-  924 (1134)
Q Consensus       847 ~~v~~s-~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~-  924 (1134)
                      ..++++ +...++++|+...|+-++++.|+.+..+....+.++++..++ ...+|++|+.+|.|..||..+...+.++. 
T Consensus       137 RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~  215 (703)
T KOG2321|consen  137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDA  215 (703)
T ss_pred             ccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC-ccceEEecccCceEEEecchhhhhheeeec
Confidence            345555 444566677788899999999999999998889999999999 88899999999999999998766554443 


Q ss_pred             -----CccC-----ceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCC--CCEE
Q 001163          925 -----GHQK-----RITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLD--QTHL  992 (1134)
Q Consensus       925 -----~h~~-----~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d--g~~l  992 (1134)
                           .|.+     .|+++.|+.+|-.++.|..+|.+.|||+.+.+..   .+.-....    .+|..+.|-+.  +..+
T Consensus       216 ~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl---~~kdh~~e----~pi~~l~~~~~~~q~~v  288 (703)
T KOG2321|consen  216 ASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL---LVKDHGYE----LPIKKLDWQDTDQQNKV  288 (703)
T ss_pred             ccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce---eecccCCc----cceeeecccccCCCceE
Confidence                 3444     3999999999999999999999999999985522   22222222    45888888664  5566


Q ss_pred             EEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcc
Q 001163          993 LAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRL 1054 (1134)
Q Consensus       993 ~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~ 1054 (1134)
                      ++.....++|||-.+|+....+..   ...+..+|+-|++.+++++.++..+-.|=+...-+
T Consensus       289 ~S~Dk~~~kiWd~~~Gk~~asiEp---t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGP  347 (703)
T KOG2321|consen  289 VSMDKRILKIWDECTGKPMASIEP---TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGP  347 (703)
T ss_pred             EecchHHhhhcccccCCceeeccc---cCCcCceeeecCCceEEEecCCCcceeEEccccCC
Confidence            767778999999999999888863   55699999999999999999998888777766544

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=4.3e-12  Score=146.11  Aligned_cols=238  Identities=13%  Similarity=0.083  Sum_probs=158.1

Q ss_pred             CcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCC---CEEEEEEccCCceeee
Q 001163          379 GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK---HIVHLYTYHGGDELRN  455 (1134)
Q Consensus       379 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~d---g~v~iwd~~~~~~~~~  455 (1134)
                      ..|.+||...+....                    +..+...+.+.+|||||+.|+..+.+   ..|.+||+.+++... 
T Consensus       184 ~~l~i~D~~g~~~~~--------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-  242 (433)
T PRK04922        184 YALQVADSDGYNPQT--------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-  242 (433)
T ss_pred             EEEEEECCCCCCceE--------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-
Confidence            368889986543322                    34577789999999999999988743   469999998876432 


Q ss_pred             eeeeecCCCCEEEEEEecCCCceEEEEEeCCC--eEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEec-CCCc
Q 001163          456 HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--VIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA-TDGK  532 (1134)
Q Consensus       456 ~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg~  532 (1134)
                         +..+.+...+++|+|||+. ++++.+.++  .|.+||+.+++.. .+..+.......+|++  ||+.|+..+ .+|.
T Consensus       243 ---l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~sp--DG~~l~f~sd~~g~  315 (433)
T PRK04922        243 ---VASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAP--DGKSIYFTSDRGGR  315 (433)
T ss_pred             ---eccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECC--CCCEEEEEECCCCC
Confidence               3344455668899999995 344555555  6999999888754 4555555555667754  557666555 4555


Q ss_pred             --EEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCC
Q 001163          533 --IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK  610 (1134)
Q Consensus       533 --i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~  610 (1134)
                        |.++|+..++.. .+...+......+|+|||+.++....+ ++...|.+||+.+++......+.   ......|+|||
T Consensus       316 ~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~~~~Lt~~~---~~~~p~~spdG  390 (433)
T PRK04922        316 PQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGSVRTLTPGS---LDESPSFAPNG  390 (433)
T ss_pred             ceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCCeEECCCCC---CCCCceECCCC
Confidence              555565544332 233333445578999999999887643 33557999999888765332221   23457899999


Q ss_pred             CEEEEEeC---CCeEEEEEcCCCceeEEEecCCCCCCcceEEEcC
Q 001163          611 NRFLAAGD---EFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK  652 (1134)
Q Consensus       611 ~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp  652 (1134)
                      +.++..+.   .+.|++++... .....+..+  ...+...+|+|
T Consensus       391 ~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~--~g~~~~p~wsp  432 (433)
T PRK04922        391 SMVLYATREGGRGVLAAVSTDG-RVRQRLVSA--DGEVREPAWSP  432 (433)
T ss_pred             CEEEEEEecCCceEEEEEECCC-CceEEcccC--CCCCCCCccCC
Confidence            98887764   34688888854 444545432  33566777776

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.48  E-value=8.8e-14  Score=154.08  Aligned_cols=255  Identities=15%  Similarity=0.131  Sum_probs=168.7

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la  434 (1134)
                      |+...+|++||-+.++ |++|+..|.|+++++.+|.....                   ..+|..+|+.+.-|.||..++
T Consensus      1100 ~~~~fTc~afs~~~~h-L~vG~~~Geik~~nv~sG~~e~s-------------------~ncH~SavT~vePs~dgs~~L 1159 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNH-LAVGSHAGEIKIFNVSSGSMEES-------------------VNCHQSAVTLVEPSVDGSTQL 1159 (1516)
T ss_pred             cccceeeEEeecCCce-EEeeeccceEEEEEccCcccccc-------------------ccccccccccccccCCcceee
Confidence            6788999999999885 58999999999999999976553                   578999999999999999888


Q ss_pred             EEeCCC--EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEe-cC---CCc
Q 001163          435 VAYSKH--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF-EG---HES  508 (1134)
Q Consensus       435 s~s~dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~---h~~  508 (1134)
                      +.+.-.  -..+|++.+-  ....+++.    .-.++.|+....+ . +.|..-..+.+||++|+..+.++ .+   ...
T Consensus      1160 tsss~S~PlsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~-r-~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y 1231 (1516)
T KOG1832|consen 1160 TSSSSSSPLSALWDASST--GGPRHSFD----EDKAVKFSNSLQF-R-ALGTEADDALLYDVQTCSPLQTYLTDTVTSSY 1231 (1516)
T ss_pred             eeccccCchHHHhccccc--cCcccccc----ccceeehhhhHHH-H-HhcccccceEEEecccCcHHHHhcCcchhhhh
Confidence            765543  4689998752  22222332    3467889876553 2 33333357889999999887763 22   222


Q ss_pred             CEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCe
Q 001163          509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA  588 (1134)
Q Consensus       509 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~  588 (1134)
                      .-++..|+|..  .+++   .||.  +||++..+.+..+..-.. ...-.|+|.|..++..+         .+||+++.+
T Consensus      1232 ~~n~a~FsP~D--~LIl---ndGv--LWDvR~~~aIh~FD~ft~-~~~G~FHP~g~eVIINS---------EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1232 SNNLAHFSPCD--TLIL---NDGV--LWDVRIPEAIHRFDQFTD-YGGGGFHPSGNEVIINS---------EIWDMRTFK 1294 (1516)
T ss_pred             hccccccCCCc--ceEe---eCce--eeeeccHHHHhhhhhhee-cccccccCCCceEEeec---------hhhhhHHHH
Confidence            23455565543  4554   3444  799987766655443221 12235899999998864         479999998


Q ss_pred             eEEEecCCCCCceEEEEEcCCCCEEEEEe--CC---------------CeEEEEEcCCCceeEEEecCCCCCCcceEEEc
Q 001163          589 VKRTYHGLGKRSVGVVQFDTTKNRFLAAG--DE---------------FMIKFWDMDNVNLLASIDADGGLQASPCIRFN  651 (1134)
Q Consensus       589 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  651 (1134)
                      .++....-.+   ..+.|+..|+.++..-  .|               ...+-+|....+.+.++...   ..+..++-.
T Consensus      1295 lLh~VP~Ldq---c~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~---R~~~Dlct~ 1368 (1516)
T KOG1832|consen 1295 LLHSVPSLDQ---CAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVD---RCLLDLCTE 1368 (1516)
T ss_pred             HHhcCccccc---eEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecc---cchhhhhcC
Confidence            8887766544   4577888887665432  00               12344455555556665542   234555556


Q ss_pred             CCCcEEEEE
Q 001163          652 KEGILLAVS  660 (1134)
Q Consensus       652 p~~~~l~~~  660 (1134)
                      |...++++-
T Consensus      1369 ~~D~~l~vI 1377 (1516)
T KOG1832|consen 1369 PTDSFLGVI 1377 (1516)
T ss_pred             CccceEEEE
Confidence            655555544

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.48  E-value=2.5e-12  Score=128.64  Aligned_cols=343  Identities=14%  Similarity=0.200  Sum_probs=222.5

Q ss_pred             eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEE-cCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcE
Q 001163          588 AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD-MDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGI  666 (1134)
Q Consensus       588 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i  666 (1134)
                      .....++|+.+ .++....-|....+++.++|.+++||- .+.++.-..+.. .....++++.+.++.+.|++|-..|++
T Consensus        15 ~ll~~~eG~~d-~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-~mP~~~~~~~y~~e~~~L~vg~~ngtv   92 (404)
T KOG1409|consen   15 ELLSKIEGSQD-DVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-YMPSPCSAMEYVSESRRLYVGQDNGTV   92 (404)
T ss_pred             hhhhhhcCchh-hhhhheeccCCCCeEEccccceeeeEEeccccccCchhhh-hCCCCceEeeeeccceEEEEEEecceE
Confidence            34556777766 677777778888999999999999994 455655554433 234578899999999999999999998


Q ss_pred             EEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccc
Q 001163          667 KILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADE  746 (1134)
Q Consensus       667 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  746 (1134)
                      .-+.+.........                                                                  
T Consensus        93 tefs~sedfnkm~~------------------------------------------------------------------  106 (404)
T KOG1409|consen   93 TEFALSEDFNKMTF------------------------------------------------------------------  106 (404)
T ss_pred             EEEEhhhhhhhcch------------------------------------------------------------------
Confidence            87766543111110                                                                  


Q ss_pred             cccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccC
Q 001163          747 AVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQ  826 (1134)
Q Consensus       747 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d  826 (1134)
                          ++.|                  ..|...+..+.|+....++++.+.|..+. |....                   
T Consensus       107 ----~r~~------------------~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e-------------------  144 (404)
T KOG1409|consen  107 ----LKDY------------------LAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTE-------------------  144 (404)
T ss_pred             ----hhhh------------------hhhhcceeeEEecCCceeEEEeccccceE-EEeec-------------------
Confidence                0001                  12788899999999999999999986654 32221                   


Q ss_pred             CCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEc--cCCeEEEEecCCCCCeEEEEEcCCCCcEEEEE
Q 001163          827 PPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNM--MTFKTMTTFMPPPPAATFLAFHPQDNNIIAIG  903 (1134)
Q Consensus       827 ~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~--~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g  903 (1134)
                        ++..+....    .....+++.+.-.  +...|. .|.|.+-.+  ....++.++.+|.+.+++++|.+ ..++|.+|
T Consensus       145 --~~~~lg~Y~----~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg  215 (404)
T KOG1409|consen  145 --SGNRLGGYN----FETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSG  215 (404)
T ss_pred             --cCCcccceE----eeccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEec
Confidence              111111000    0111111111111  333444 455555443  45678889999999999999999 88999999


Q ss_pred             eCCCcEEEEEcccceE-EEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceee---------------
Q 001163          904 MEDSSIQIYNVRVDEV-KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFL---------------  967 (1134)
Q Consensus       904 ~~dg~i~iwd~~~~~~-~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~---------------  967 (1134)
                      ..|..+.+||+...+- ...+.+|.+.|..+...+--+.|++++.||.|.+|+++........-+               
T Consensus       216 ~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn  295 (404)
T KOG1409|consen  216 ASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWN  295 (404)
T ss_pred             cccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHH
Confidence            9999999999976543 467889999999999988899999999999999999876443221100               


Q ss_pred             ----------eecCCCCCCC-CCceEEEEcCCCCEEEEEeeceEEEEeCCCc-------ccceeeccCCCccCEEEEEEc
Q 001163          968 ----------TIPNGRTASA-LADTRVQFHLDQTHLLAVHETQIAIYEAPKL-------ECLKQFVPREASGPITHATYS 1029 (1134)
Q Consensus       968 ----------~~~~~~~~~~-~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~-------~~~~~~~~~~h~~~v~~~~~s 1029 (1134)
                                .+...|-... ..+...+-+.-..+...+..-.+++.|....       ..++.+.  .-...|+.+.+-
T Consensus       296 ~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~ph--ei~tgItamhlq  373 (404)
T KOG1409|consen  296 FRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPH--EIKTGITAMHLQ  373 (404)
T ss_pred             HHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCcccccc--ccccceeEEEhh
Confidence                      0000000000 1111111122222222344455666554311       1123332  124679999999


Q ss_pred             cCCCEEEEEecCCcEEEeecCC
Q 001163         1030 CDSQSIYVAFEEGSVGVLTAST 1051 (1134)
Q Consensus      1030 ~dg~~l~s~s~Dg~i~vwd~~~ 1051 (1134)
                      .+-.+|+|++.|..|+|||+.+
T Consensus       374 etlglLvTsG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  374 ETLGLLVTSGTDRVIKIWDVRS  395 (404)
T ss_pred             hhccceeecCCceEEEEEechh
Confidence            9999999999999999999864

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=9.4e-12  Score=142.69  Aligned_cols=224  Identities=14%  Similarity=0.070  Sum_probs=147.4

Q ss_pred             ccCCCCEEEEEEcCCCCEEEEEeCC---CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEE
Q 001163          415 SDYTASVNRVMWSPDGTLFGVAYSK---HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV  491 (1134)
Q Consensus       415 ~~h~~~V~~l~~spd~~~las~s~d---g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i  491 (1134)
                      ..+...+.+.+|||||+.|+..+.+   ..|.+||+.+++...    +....+.+.+.+|+|||+. ++++.+.++...|
T Consensus       192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~I  266 (427)
T PRK02889        192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQI  266 (427)
T ss_pred             ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCceE
Confidence            4577889999999999999987643   469999999886432    3334455678999999995 3446677877666


Q ss_pred             EE--CCCCceeEEecCCCcCEEEEeccccCCccEEEEec-CCCcEEEEecCCCC-ceeeecCCCCCeeEEEECcCCCEEE
Q 001163          492 WD--AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA-TDGKIKAWLYDNLG-SRVDYDAPGHSSTMMAYSADGARLF  567 (1134)
Q Consensus       492 wd--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~  567 (1134)
                      |.  +.++. ...+..+........|++  ||+.|+..+ .++...+|.++... ....+..........+|+|||++++
T Consensus       267 y~~d~~~~~-~~~lt~~~~~~~~~~wSp--DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia  343 (427)
T PRK02889        267 YTVNADGSG-LRRLTQSSGIDTEPFFSP--DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLA  343 (427)
T ss_pred             EEEECCCCC-cEECCCCCCCCcCeEEcC--CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEE
Confidence            65  44443 555655555556667754  557666554 45677777664322 2222222333445678999999999


Q ss_pred             EEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCC---eEEEEEcCCCceeEEEecCCCCCC
Q 001163          568 SCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF---MIKFWDMDNVNLLASIDADGGLQA  644 (1134)
Q Consensus       568 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~  644 (1134)
                      ..+..+ +...|.+||+.+++........   ......|+||++.|+.++.++   .+++.+. ++.....+..+  .+.
T Consensus       344 ~~s~~~-g~~~I~v~d~~~g~~~~lt~~~---~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~--~g~  416 (427)
T PRK02889        344 YISRVG-GAFKLYVQDLATGQVTALTDTT---RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQ--GGD  416 (427)
T ss_pred             EEEccC-CcEEEEEEECCCCCeEEccCCC---CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecC--CCC
Confidence            876543 3457999999988755433221   235678999999998887443   3556666 45555555433  335


Q ss_pred             cceEEEcCC
Q 001163          645 SPCIRFNKE  653 (1134)
Q Consensus       645 v~~v~~sp~  653 (1134)
                      +...+|+|-
T Consensus       417 ~~~p~wsp~  425 (427)
T PRK02889        417 VREPSWGPF  425 (427)
T ss_pred             CCCCccCCC
Confidence            667788773

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=3e-10  Score=123.80  Aligned_cols=538  Identities=13%  Similarity=0.145  Sum_probs=302.0

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la  434 (1134)
                      .+....|++|+....| +|+|+.||.++|-.+.+...-...+    -+...+.-.....+.||.+.|.-+.|+.+.+.|-
T Consensus        13 nnvkL~c~~WNke~gy-IAcgG~dGlLKVlKl~t~t~d~~~~----glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLT   87 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGY-IACGGADGLLKVLKLGTDTTDLNKS----GLAAASNLSMNQTLEGHNASVMVVTWNENNQKLT   87 (1189)
T ss_pred             CCceEEEEEEcccCCe-EEeccccceeEEEEccccCCccccc----ccccccccchhhhhccCcceEEEEEecccccccc
Confidence            4456779999998885 6999999999999987653211100    0111111122235889999999999999999999


Q ss_pred             EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEE--------EEECC-----------
Q 001163          435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIK--------VWDAV-----------  495 (1134)
Q Consensus       435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~--------iwd~~-----------  495 (1134)
                      +...+|.|.||-+-.|.-.... .-+.....|.+++|+.||..  +...-.||.|.        ||.-+           
T Consensus        88 tSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~k--IcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~w  164 (1189)
T KOG2041|consen   88 TSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGTK--ICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLW  164 (1189)
T ss_pred             ccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCcE--EEEEEccCCEEEEeeccceecchhcchheccceee
Confidence            9999999999999887644322 23345667899999999984  55445555443        45311           


Q ss_pred             ------------CCcee-EE--------------------ecCCCcCEEEEeccc------cCCccEEEEecCCCcEEEE
Q 001163          496 ------------TGTKQ-YI--------------------FEGHESPVYSICPHH------KENIQFIFSTATDGKIKAW  536 (1134)
Q Consensus       496 ------------~~~~~-~~--------------------~~~h~~~v~~~~~~~------~~~~~~l~s~s~dg~i~vw  536 (1134)
                                  .|++. ..                    +......|..++|..      .++...++.+..+|.+.+-
T Consensus       165 s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiM  244 (1189)
T KOG2041|consen  165 SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIM  244 (1189)
T ss_pred             cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhh
Confidence                        11100 00                    001111233444431      2355788999999998887


Q ss_pred             ecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCC----Ce-EEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCC
Q 001163          537 LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG----ES-YLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN  611 (1134)
Q Consensus       537 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~----~~-~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  611 (1134)
                      .-.+......+.. +-.+....|+++|..|++++.+.+.    +. .|..+. .-|+.+.+++.... .|++++|-..|-
T Consensus       245 R~eND~~Pvv~dt-gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~-~It~lsWEg~gL  321 (1189)
T KOG2041|consen  245 RSENDPEPVVVDT-GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGS-CITGLSWEGTGL  321 (1189)
T ss_pred             hhcCCCCCeEEec-ccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCc-eeeeeEEcCCce
Confidence            6655544444433 3578889999999999999876432    22 344443 45777888877665 899999987776


Q ss_pred             EEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCccccccc
Q 001163          612 RFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRV  691 (1134)
Q Consensus       612 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~  691 (1134)
                      .++.+ -|+.|++=+++..-.-..+..     .   +.+--.+.-+    ..-.|.+||..+.+..++.+.+...-    
T Consensus       322 riA~A-vdsfiyfanIRP~ykWgy~e~-----T---vVy~y~~~e~----p~y~i~Fwdtk~nek~vK~V~~~~~~----  384 (1189)
T KOG2041|consen  322 RIAIA-VDSFIYFANIRPEYKWGYIEE-----T---VVYVYQKEEL----PQYGIMFWDTKTNEKTVKTVTHFENM----  384 (1189)
T ss_pred             EEEEE-ecceEEEEeecccceEEEeee-----E---EEEEEccCCC----cceEEEEEecccChhhhhhhcceeeh----
Confidence            66555 467888777654332222210     1   1111111100    11245677777776666665442111    


Q ss_pred             chhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccC----Cccceec
Q 001163          692 ASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEIT----EPSQCRS  767 (1134)
Q Consensus       692 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~----~~~~~~~  767 (1134)
                                         ++..+.|                       .++.-..++.+.-+..-...    .-..|..
T Consensus       385 -------------------a~~~ehC-----------------------vL~~~~d~~~i~e~s~le~~~~~~~l~LCNS  422 (1189)
T KOG2041|consen  385 -------------------AFYREHC-----------------------VLINRQDDGVIPEYSTLENRSRVYFLQLCNS  422 (1189)
T ss_pred             -------------------heecccE-----------------------EEEeccccCCCcchhhhhcccceEEEeeecc
Confidence                               0111111                       00000111111111000000    0000111


Q ss_pred             cccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCee
Q 001163          768 LRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVP  847 (1134)
Q Consensus       768 ~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~  847 (1134)
                      +..+....-..|.-.-..-++..++.++.+ .+.+|.....++...-.              +  ......+     .  
T Consensus       423 IGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~s~l~--------------~--~k~rkeg-----r--  478 (1189)
T KOG2041|consen  423 IGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIWHYVLPKFNSVLA--------------G--VKIRKEG-----R--  478 (1189)
T ss_pred             cCCcCCCCcceeeeeEEEecceEEEEeccc-cEEEEEEeccchhhhhh--------------h--hhhcccc-----c--
Confidence            111111112233333344466667777766 57788766443321100              0  0000000     0  


Q ss_pred             EEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCc
Q 001163          848 CFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGH  926 (1134)
Q Consensus       848 ~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h  926 (1134)
                         |+-|  ..-+++ |+++   +..    ..++.+...+|.+++.+.   ++|.++-..|.|.-|.+.+.-...... -
T Consensus       479 ---~h~D--dtp~ga~d~~l---~ys----~kt~~G~~DpICAl~~sd---k~l~vareSG~I~rySl~nv~l~n~y~-~  542 (1189)
T KOG2041|consen  479 ---FHGD--DTPEGAQDRTL---EYS----TKTLLGSKDPICALCISD---KFLMVARESGGIYRYSLNNVVLTNSYP-V  542 (1189)
T ss_pred             ---ccCC--CCccchhhcee---ecc----ceeeccCCCcceeeeecc---eEEEEEeccCceEEEEecceeeeeccc-c
Confidence               1111  111122 3322   111    356677888999999864   799999999999999999877666554 3


Q ss_pred             cCceEEEEEeeCCCEEEEEeCCCcEEEEECCCC-ccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEe
Q 001163          927 QKRITGLAFSNTLNVLVSSGADSQLCVWSTDGW-EKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYE 1004 (1134)
Q Consensus       927 ~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd 1004 (1134)
                      +..|..++.+-+...+|....-|.+.+.|+.-. .......+...+.     ..|-.+.|..|+..|++ -....++|++
T Consensus       543 n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~er-----rDVWd~~Wa~dNp~llAlmeKtrmyifr  617 (1189)
T KOG2041|consen  543 NPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSER-----RDVWDYEWAQDNPNLLALMEKTRMYIFR  617 (1189)
T ss_pred             CchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhh-----hhhhhhhhccCCchHHhhhhhceEEEec
Confidence            456889999888889998888898888888731 1111111111111     23677788888776665 3445677776


Q ss_pred             CCC
Q 001163         1005 APK 1007 (1134)
Q Consensus      1005 ~~~ 1007 (1134)
                      -..
T Consensus       618 gnd  620 (1189)
T KOG2041|consen  618 GND  620 (1189)
T ss_pred             CcC
Confidence            543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.47  E-value=3.9e-12  Score=134.47  Aligned_cols=253  Identities=10%  Similarity=0.114  Sum_probs=166.8

Q ss_pred             CCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEE-----cCCCC
Q 001163          357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW-----SPDGT  431 (1134)
Q Consensus       357 ~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-----spd~~  431 (1134)
                      +.+....++-.|++|+.--+  ..+++|+...+..+..             ++....+.+-  ...|=+|     .|++-
T Consensus       124 g~~~~~~~~~~gd~lcFnvg--~~lyv~~~~g~~~~~~-------------pi~k~~y~gt--~P~cHdfn~~~a~~~g~  186 (636)
T KOG2394|consen  124 GIVTNTNQSGKGDRLCFNVG--RELYVYSYRGAADLSK-------------PIDKREYKGT--SPTCHDFNSFTATPKGL  186 (636)
T ss_pred             cceeeccccCCCCEEEEecC--CeEEEEEccCcchhcc-------------chhhhcccCC--CCceecccccccCCCCc
Confidence            35566667777887765433  4589999886544331             1111112222  2233334     35677


Q ss_pred             EEEEEeCCCEEEEEEccCCceeeeeeeeec--CCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcC
Q 001163          432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEA--HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESP  509 (1134)
Q Consensus       432 ~las~s~dg~v~iwd~~~~~~~~~~~~l~~--h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~  509 (1134)
                      -|+.|-.-|.|.+.|....+ +.++.....  -+..|+|+.|-|.+.. .++.+-.+|.+.++|..          +...
T Consensus       187 dllIGf~tGqvq~idp~~~~-~sklfne~r~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~~----------~~~~  254 (636)
T KOG2394|consen  187 DLLIGFTTGQVQLIDPINFE-VSKLFNEERLINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDKE----------IVCG  254 (636)
T ss_pred             ceEEeeccCceEEecchhhH-HHHhhhhcccccccceEEEEEEeCCCc-eEEEEEecCceEEeecc----------cccc
Confidence            88889899999998876632 222111111  3467999999998776 56677788999999851          1112


Q ss_pred             EEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCee
Q 001163          510 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV  589 (1134)
Q Consensus       510 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~  589 (1134)
                      .+.-++..-.++..+.....-+      -.+...+..+......|..++|+|||++||+.+.|    +.++|+|..+.++
T Consensus       255 ~t~p~~~~~k~~~~f~i~t~ks------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqD----GfLRvF~fdt~eL  324 (636)
T KOG2394|consen  255 ATAPSYQALKDGDQFAILTSKS------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQD----GFLRIFDFDTQEL  324 (636)
T ss_pred             CCCCcccccCCCCeeEEeeeec------cccCCccceeEeccccccceeEcCCCceEEEEecC----ceEEEeeccHHHH
Confidence            2222222223333333221100      01112333333334588999999999999999864    4799999999888


Q ss_pred             EEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEc
Q 001163          590 KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFN  651 (1134)
Q Consensus       590 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  651 (1134)
                      +..++..-. ...+++|+|||++|++|++|--|.||.+..++.+..-.  +|...|+.|+|.
T Consensus       325 lg~mkSYFG-GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq--GHkSWVs~VaFD  383 (636)
T KOG2394|consen  325 LGVMKSYFG-GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ--GHKSWVSVVAFD  383 (636)
T ss_pred             HHHHHhhcc-ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc--ccccceeeEeec
Confidence            877776665 78899999999999999999999999999988887655  558899999998

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.46  E-value=3.7e-10  Score=125.62  Aligned_cols=207  Identities=16%  Similarity=0.205  Sum_probs=129.7

Q ss_pred             eeEEEEcCCCCeEEEee--CCeEEEEEccC-CeEEEE---e----------cCCCCCeEEEEEcCCCCcEEEEEe-CCCc
Q 001163          846 VPCFALSKNDSYVMSAS--GGKISLFNMMT-FKTMTT---F----------MPPPPAATFLAFHPQDNNIIAIGM-EDSS  908 (1134)
Q Consensus       846 v~~v~~s~dg~~la~~s--dg~i~lwd~~~-~~~~~~---~----------~~~~~~v~~l~~sp~~~~~la~g~-~dg~  908 (1134)
                      ...++++|++++|+++.  +|+|.++++.. +.....   +          +.......++.|+| +++++++.. ....
T Consensus        89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~  167 (345)
T PF10282_consen   89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADR  167 (345)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTE
T ss_pred             cEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCE
Confidence            34566777777777765  56777777754 332222   1          11234578999999 777776654 3458


Q ss_pred             EEEEEcccce--EE--Eecc-CccCceEEEEEeeCCCEEEEEe-CCCcEEEEECC--CCccccceeeeecCCCCCCCCCc
Q 001163          909 IQIYNVRVDE--VK--TKLK-GHQKRITGLAFSNTLNVLVSSG-ADSQLCVWSTD--GWEKQASKFLTIPNGRTASALAD  980 (1134)
Q Consensus       909 i~iwd~~~~~--~~--~~l~-~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v  980 (1134)
                      |++|++....  +.  ..+. .....-+.++|+|++++++... .+++|.++++.  .+.......+.............
T Consensus       168 v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  247 (345)
T PF10282_consen  168 VYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAP  247 (345)
T ss_dssp             EEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSE
T ss_pred             EEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCc
Confidence            9999997654  21  2222 2334578999999999887655 47789999988  44332222222221111111357


Q ss_pred             eEEEEcCCCCEEEEE--eeceEEEEeCC--Cccc--ceeeccCCCccCEEEEEEccCCCEEEEEec-CCcEEEeec--CC
Q 001163          981 TRVQFHLDQTHLLAV--HETQIAIYEAP--KLEC--LKQFVPREASGPITHATYSCDSQSIYVAFE-EGSVGVLTA--ST 1051 (1134)
Q Consensus       981 ~~l~fs~dg~~l~~~--~d~~i~iwd~~--~~~~--~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~-Dg~i~vwd~--~~ 1051 (1134)
                      ..++++|||++|.++  ..++|.+|+++  +++.  +..+...  ....+.++++|||++|+++.. ++.|.+|++  ++
T Consensus       248 ~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~--G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t  325 (345)
T PF10282_consen  248 AEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG--GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT  325 (345)
T ss_dssp             EEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES--SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred             eeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC--CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence            889999999999996  45789999994  2332  2333321  345899999999999988774 578999976  46


Q ss_pred             Ccce
Q 001163         1052 LRLR 1055 (1134)
Q Consensus      1052 ~~~~ 1055 (1134)
                      |.+.
T Consensus       326 G~l~  329 (345)
T PF10282_consen  326 GKLT  329 (345)
T ss_dssp             TEEE
T ss_pred             CcEE
Confidence            6654

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=1.8e-11  Score=140.91  Aligned_cols=226  Identities=12%  Similarity=0.130  Sum_probs=147.0

Q ss_pred             eEEEeecCCCeeEEEEcCCCCeEEEEEeC--CCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEE
Q 001163          349 VVMTLNQGSAVKSMDFHPVQQILLVVGTN--MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW  426 (1134)
Q Consensus       349 ~~~~~~h~~~V~~v~fsp~g~~lla~gs~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  426 (1134)
                      ......+...+.+.+|||||++|+.+...  +..|.+||+.+++...                    +..+.+...+++|
T Consensus       196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~g~~~~~~~  255 (433)
T PRK04922        196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VASFRGINGAPSF  255 (433)
T ss_pred             ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------eccCCCCccCceE
Confidence            33344577889999999999977655432  3469999998876432                    2233445568899


Q ss_pred             cCCCCEEEE-EeCCC--EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEe-CCCe--EEEEECCCCcee
Q 001163          427 SPDGTLFGV-AYSKH--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-EDRV--IKVWDAVTGTKQ  500 (1134)
Q Consensus       427 spd~~~las-~s~dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s-~d~~--i~iwd~~~~~~~  500 (1134)
                      ||||+.|+. .+.+|  .|.+||+.+++..    .+..|.......+|+|||+  .|+..+ .++.  |.++|+.+++..
T Consensus       256 SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~--~l~f~sd~~g~~~iy~~dl~~g~~~  329 (433)
T PRK04922        256 SPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGK--SIYFTSDRGGRPQIYRVAASGGSAE  329 (433)
T ss_pred             CCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCC--EEEEEECCCCCceEEEEECCCCCeE
Confidence            999998764 45555  6999999987643    2555666667889999999  455444 4444  777787776643


Q ss_pred             EEecCCCcCEEEEeccccCCccEEEEecCCC---cEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCe
Q 001163          501 YIFEGHESPVYSICPHHKENIQFIFSTATDG---KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGES  577 (1134)
Q Consensus       501 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~  577 (1134)
                      . +..+.......+|++  +|+.|+..+.++   .|.+||+.++... .+. +........|+|||++++..+.. .+..
T Consensus       330 ~-lt~~g~~~~~~~~Sp--DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~-~g~~  403 (433)
T PRK04922        330 R-LTFQGNYNARASVSP--DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATRE-GGRG  403 (433)
T ss_pred             E-eecCCCCccCEEECC--CCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEec-CCce
Confidence            3 222223344566754  557776654332   5899998766544 332 22244567999999999887765 3466


Q ss_pred             EEEEEeCCCCeeEEEecCCCCCceEEEEEcC
Q 001163          578 YLVEWNESEGAVKRTYHGLGKRSVGVVQFDT  608 (1134)
Q Consensus       578 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~  608 (1134)
                      .|.+++... .....+..+.. .+...+|+|
T Consensus       404 ~L~~~~~~g-~~~~~l~~~~g-~~~~p~wsp  432 (433)
T PRK04922        404 VLAAVSTDG-RVRQRLVSADG-EVREPAWSP  432 (433)
T ss_pred             EEEEEECCC-CceEEcccCCC-CCCCCccCC
Confidence            799999854 44444543332 455566765

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=2.2e-11  Score=139.40  Aligned_cols=222  Identities=10%  Similarity=0.081  Sum_probs=146.6

Q ss_pred             eecCCCeeEEEEcCCCCeEEEEEe--CCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCC
Q 001163          353 LNQGSAVKSMDFHPVQQILLVVGT--NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG  430 (1134)
Q Consensus       353 ~~h~~~V~~v~fsp~g~~lla~gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~  430 (1134)
                      ..+...+.+.+|||||++|+.+..  .+..|.+||+.+|+...                    +....+.+..++|||||
T Consensus       195 t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~~~~~~~~~~~SPDG  254 (429)
T PRK03629        195 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRHNGAPAFSPDG  254 (429)
T ss_pred             ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccCCCCCcCCeEECCCC
Confidence            446778999999999998765542  34579999998876432                    11223334568999999


Q ss_pred             CEEEEE-eCCC--EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeC-CC--eEEEEECCCCceeEEec
Q 001163          431 TLFGVA-YSKH--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-DR--VIKVWDAVTGTKQYIFE  504 (1134)
Q Consensus       431 ~~las~-s~dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~-d~--~i~iwd~~~~~~~~~~~  504 (1134)
                      +.|+.. +.+|  .|.+||+.+++...    +..+...+....|+|||+  .|+..+. ++  .|.++|+.+++.. .+.
T Consensus       255 ~~La~~~~~~g~~~I~~~d~~tg~~~~----lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt  327 (429)
T PRK03629        255 SKLAFALSKTGSLNLYVMDLASGQIRQ----VTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQVYKVNINGGAPQ-RIT  327 (429)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCEEE----ccCCCCCcCceEECCCCC--EEEEEeCCCCCceEEEEECCCCCeE-Eee
Confidence            988865 4444  58999998876432    444556788999999999  4555544 34  4555577666543 333


Q ss_pred             CCCcCEEEEeccccCCccEEEEecCC---CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEE
Q 001163          505 GHESPVYSICPHHKENIQFIFSTATD---GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE  581 (1134)
Q Consensus       505 ~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~  581 (1134)
                      .+.......+|+  ++|++|+..+.+   ..|.+||+.++.... +.. ........|+|||+.|+..+.++. ...+.+
T Consensus       328 ~~~~~~~~~~~S--pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~~~s~~~~-~~~l~~  402 (429)
T PRK03629        328 WEGSQNQDADVS--SDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVIYSSSQGM-GSVLNL  402 (429)
T ss_pred             cCCCCccCEEEC--CCCCEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEEEEEEcCCC-ceEEEE
Confidence            333344556665  455777665433   358888987665332 322 223456789999999999887543 456888


Q ss_pred             EeCCCCeeEEEecCCCCCceEEEEEcC
Q 001163          582 WNESEGAVKRTYHGLGKRSVGVVQFDT  608 (1134)
Q Consensus       582 wd~~~~~~~~~~~~~~~~~v~~~~~~~  608 (1134)
                      +++ +|.....+.++.. .+...+|+|
T Consensus       403 ~~~-~G~~~~~l~~~~~-~~~~p~Wsp  427 (429)
T PRK03629        403 VST-DGRFKARLPATDG-QVKFPAWSP  427 (429)
T ss_pred             EEC-CCCCeEECccCCC-CcCCcccCC
Confidence            888 4555566666554 667777876

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.44  E-value=2.6e-10  Score=116.45  Aligned_cols=279  Identities=10%  Similarity=0.070  Sum_probs=183.2

Q ss_pred             ccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccC---CeEEeeecCCCCCCcccccccCCCCcc
Q 001163          748 VEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASN---AVHKLWKWPRNERNSTGKATTNQAPQL  824 (1134)
Q Consensus       748 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~  824 (1134)
                      ++.|++|++...........+    -.....++-++|+|+++.|.++..+   |.+.-|.++                  
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~----v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD------------------   72 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQL----VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRID------------------   72 (346)
T ss_pred             CCceEEEEEeCcccccchhhh----ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEc------------------
Confidence            467999999853322222111    1256778899999999998888764   666666554                  


Q ss_pred             cCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee--CCeEEEEEccC-CeEEEE--ecCCCCC----------eEE
Q 001163          825 WQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FKTMTT--FMPPPPA----------ATF  889 (1134)
Q Consensus       825 ~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s--dg~i~lwd~~~-~~~~~~--~~~~~~~----------v~~  889 (1134)
                        ..+|++....-.. ....+-..++++++|++|+++.  .|.|.++-+.. |.+...  ...|.+.          +.+
T Consensus        73 --~~~G~Lt~ln~~~-~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~  149 (346)
T COG2706          73 --PDDGRLTFLNRQT-LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS  149 (346)
T ss_pred             --CCCCeEEEeeccc-cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence              2333321110000 0223347899999999999998  58899999854 433222  1224443          888


Q ss_pred             EEEcCCCCcEEEEEeC-CCcEEEEEcccceEEEecc---CccCceEEEEEeeCCCEEEEEeC-CCcEEEEECCC--Cccc
Q 001163          890 LAFHPQDNNIIAIGME-DSSIQIYNVRVDEVKTKLK---GHQKRITGLAFSNTLNVLVSSGA-DSQLCVWSTDG--WEKQ  962 (1134)
Q Consensus       890 l~~sp~~~~~la~g~~-dg~i~iwd~~~~~~~~~l~---~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~iwd~~~--~~~~  962 (1134)
                      ..|.| ++++|++.+- -..|.+|++..|++...-.   .....-+.|+|+|++++.....+ +++|.+|..+.  ++..
T Consensus       150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~  228 (346)
T COG2706         150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE  228 (346)
T ss_pred             eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence            99999 8888877643 3379999999876432211   23345688999999999887765 89999999987  3333


Q ss_pred             cceeeeecCCCCCCCCCceEEEEcCCCCEEEEE--eeceEEEEeCCCcccceeec--cCCCccCEEEEEEccCCCEEEEE
Q 001163          963 ASKFLTIPNGRTASALADTRVQFHLDQTHLLAV--HETQIAIYEAPKLECLKQFV--PREASGPITHATYSCDSQSIYVA 1038 (1134)
Q Consensus       963 ~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~i~iwd~~~~~~~~~~~--~~~h~~~v~~~~~s~dg~~l~s~ 1038 (1134)
                      ....+...........+...+.+++||++|.++  ....|.+|.+........+.  ..-+....+...|+++|++|+++
T Consensus       229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa  308 (346)
T COG2706         229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA  308 (346)
T ss_pred             EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence            322333222233333567889999999999997  33478888876432211111  11234457889999999999988


Q ss_pred             ecC-CcEEEeecCCC
Q 001163         1039 FEE-GSVGVLTASTL 1052 (1134)
Q Consensus      1039 s~D-g~i~vwd~~~~ 1052 (1134)
                      ..| ..|.+|..+..
T Consensus       309 ~q~sd~i~vf~~d~~  323 (346)
T COG2706         309 NQKSDNITVFERDKE  323 (346)
T ss_pred             ccCCCcEEEEEEcCC
Confidence            876 56888887553

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=9.3e-11  Score=125.51  Aligned_cols=330  Identities=15%  Similarity=0.170  Sum_probs=204.9

Q ss_pred             CCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEE-----eC-----CCe
Q 001163          552 HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAA-----GD-----EFM  621 (1134)
Q Consensus       552 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~~-----dg~  621 (1134)
                      ..+...+++++|++++.+..     ..+.|++..++..+.+....   .+..+.|+|.+++|.+-     ..     .-.
T Consensus        35 ~~~~v~~~S~~G~lfA~~~~-----~~v~i~~~~~~~~~lt~~~~---~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn  106 (566)
T KOG2315|consen   35 RPCNVFAYSNNGRLFAYSDN-----QVVKVFEIATLKVVLCVELK---KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPN  106 (566)
T ss_pred             CcceeEEEcCCCcEEEEEcC-----CeEEEEEccCCcEEEEeccc---eeeeeeecccccccccccccccccCCCCCCCc
Confidence            35678899999999998753     24899998888644444332   56789999999988762     11     234


Q ss_pred             EEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccc
Q 001163          622 IKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPA  701 (1134)
Q Consensus       622 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  701 (1134)
                      +.+|+..++.....+......+  .+..|+.|..+.+ --..+.+.+|++.+.......+........            
T Consensus       107 ~~v~~vet~~~~s~~q~k~Q~~--W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~~kl~~~~i~~f------------  171 (566)
T KOG2315|consen  107 VLVYNVETGVQRSQIQKKMQNG--WVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQHKLSVSGITML------------  171 (566)
T ss_pred             eeeeeeccceehhheehhhhcC--cccccccchhhhh-hhhcceEEEEecCCccceeeeeeccceeeE------------
Confidence            7799999976666665443222  5888988865433 223468999998775444444433222111            


Q ss_pred             cccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeeccc--CCccceeccccCCccccccE
Q 001163          702 IGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEI--TEPSQCRSLRLPDNLTAMRV  779 (1134)
Q Consensus       702 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~i  779 (1134)
                               .++|..+     ...+..+.+.           ..+.-..+++|.....  ......+.+      ....=
T Consensus       172 ---------~lSpgp~-----~~~vAvyvPe-----------~kGaPa~vri~~~~~~~~~~~~a~ksF------Fkadk  220 (566)
T KOG2315|consen  172 ---------SLSPGPE-----PPFVAVYVPE-----------KKGAPASVRIYKYPEEGQHQPVANKSF------FKADK  220 (566)
T ss_pred             ---------EecCCCC-----CceEEEEccC-----------CCCCCcEEEEeccccccccchhhhccc------cccce
Confidence                     2333311     0011111111           1222346777776621  111222222      11222


Q ss_pred             EEEEEecCCceeeeecc---CCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCC
Q 001163          780 SRLIYTNSGLAILALAS---NAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDS  856 (1134)
Q Consensus       780 ~~l~~spdg~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~  856 (1134)
                      ..+.|++-|.-|++...   |.+             +...-...++.+.+.. |.-....+.   ..++|.++.|+++|+
T Consensus       221 vqm~WN~~gt~LLvLastdVDkt-------------n~SYYGEq~Lyll~t~-g~s~~V~L~---k~GPVhdv~W~~s~~  283 (566)
T KOG2315|consen  221 VQMKWNKLGTALLVLASTDVDKT-------------NASYYGEQTLYLLATQ-GESVSVPLL---KEGPVHDVTWSPSGR  283 (566)
T ss_pred             eEEEeccCCceEEEEEEEeecCC-------------CccccccceEEEEEec-CceEEEecC---CCCCceEEEECCCCC
Confidence            34567766654433221   210             0001111123333333 333333343   479999999999999


Q ss_pred             eEEEee---CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCC---CcEEEEEcccceEEEeccCccCce
Q 001163          857 YVMSAS---GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED---SSIQIYNVRVDEVKTKLKGHQKRI  930 (1134)
Q Consensus       857 ~la~~s---dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~d---g~i~iwd~~~~~~~~~l~~h~~~V  930 (1134)
                      -+++..   -.++.|+|+ .+..+..+  ..++-+++-|+| .|++|+.++-+   |.+.|||+.+.+++..+..-..  
T Consensus       284 EF~VvyGfMPAkvtifnl-r~~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--  357 (566)
T KOG2315|consen  284 EFAVVYGFMPAKVTIFNL-RGKPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--  357 (566)
T ss_pred             EEEEEEecccceEEEEcC-CCCEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhccccccCCc--
Confidence            887775   378999998 45555555  567888999999 88888887765   6999999999988888876554  


Q ss_pred             EEEEEeeCCCEEEEEeC------CCcEEEEECCC
Q 001163          931 TGLAFSNTLNVLVSSGA------DSQLCVWSTDG  958 (1134)
Q Consensus       931 ~~l~~s~d~~~l~s~s~------Dg~i~iwd~~~  958 (1134)
                      +-+.|+|||.+++|+..      |..++||++..
T Consensus       358 t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  358 TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             eEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence            44689999999998864      77899999887

>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]

Probab=99.43  E-value=1.1e-12  Score=126.52  Aligned_cols=168  Identities=20%  Similarity=0.295  Sum_probs=128.0

Q ss_pred             cchHHHHHHHHHHhhhcCHHHHHHHHHHhcCCCcc---------HHHHHHHhhcccHHHHHHHHccc--CcccCCccchh
Q 001163            3 SLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFN---------MRYFEDMVTNGEWDEVEKYLSGF--TKVDDNRYSMK   71 (1134)
Q Consensus         3 ~~~~e~~~li~q~L~~~g~~~s~~~l~~Esg~~~~---------~~~~~~~i~~g~w~~~~~~l~~~--~~~~~~~~~~~   71 (1134)
                      ...+|+.|||+.||-.+||.++|..+.+|+|+...         -..+|.+|..|+.++|++.+..+  ..++.+.   .
T Consensus        24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~---~  100 (228)
T KOG2659|consen   24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR---E  100 (228)
T ss_pred             cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch---h
Confidence            45789999999999999999999999999999772         35699999999999999999998  3344432   2


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccccccccCCC--ChhHHHHHHHHHHh
Q 001163           72 IFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLENFRDNEQLSKYGD--TKSARGIMLAELKK  149 (1134)
Q Consensus        72 ~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~--~~~~R~~l~~~l~~  149 (1134)
                      +.|.+++|+++|++..+..++|+.|+|.+|.|+...+++.++.|...+...-++.....+ ...  ....|.++...+.+
T Consensus       101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp-~~~l~~~s~R~kvA~~vN~  179 (228)
T KOG2659|consen  101 LFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESP-SAELLSQSLRQKVASEVNS  179 (228)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCc-HHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999887888888888877665554322211 111  24568888888877


Q ss_pred             hcccCcCccccccCCCCchHHHHHHHHHHHHHH
Q 001163          150 LIEANPLFRDKLQFPSLKNSRLRTLINQSLNWQ  182 (1134)
Q Consensus       150 ~i~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q  182 (1134)
                      .|=...-   .     -...+|..||..-..-|
T Consensus       180 aiL~~~~---~-----~~~~~l~~llk~~~~~~  204 (228)
T KOG2659|consen  180 AILASQE---H-----ESEPKLPFLLKLISWAQ  204 (228)
T ss_pred             HHHHHhc---c-----cccchHHHHHHHHHHHH
Confidence            6543211   0     11347777774444333

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=3.2e-10  Score=121.48  Aligned_cols=285  Identities=17%  Similarity=0.239  Sum_probs=180.9

Q ss_pred             cEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCe
Q 001163          778 RVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSY  857 (1134)
Q Consensus       778 ~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~  857 (1134)
                      .+..+.|+|-|.+|.+--.      |.+...      .-.....+++|+++++.... .+..  ....-++..|+.|..+
T Consensus        75 ~~~~L~fSP~g~yL~T~e~------~~i~~~------~~~~~pn~~v~~vet~~~~s-~~q~--k~Q~~W~~qfs~dEsl  139 (566)
T KOG2315|consen   75 KTYDLLFSPKGNYLLTWEP------WAIYGP------KNASNPNVLVYNVETGVQRS-QIQK--KMQNGWVPQFSIDESL  139 (566)
T ss_pred             eeeeeeecccccccccccc------cccccC------CCCCCCceeeeeeccceehh-heeh--hhhcCcccccccchhh
Confidence            4667788888887654221      111100      00012345677777743322 2222  1111258899999887


Q ss_pred             EEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCC--cEEEE-----EeCCCcEEEEEcccceEEEec--c-Ccc
Q 001163          858 VMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDN--NIIAI-----GMEDSSIQIYNVRVDEVKTKL--K-GHQ  927 (1134)
Q Consensus       858 la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~--~~la~-----g~~dg~i~iwd~~~~~~~~~l--~-~h~  927 (1134)
                      .|--..+.+.+|+..+.+.+.. +-|...|+.+++|| ++  ..||+     ++.-+.|+||.......-..+  + -..
T Consensus       140 ~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSp-gp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFk  217 (566)
T KOG2315|consen  140 AARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSP-GPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFK  217 (566)
T ss_pred             hhhhhcceEEEEecCCccceee-eeeccceeeEEecC-CCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccc
Confidence            6655688999999977443322 22678899999999 53  34443     345568999988632211111  0 011


Q ss_pred             CceEEEEEeeCCCE---EEEEeCCC---------cEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-
Q 001163          928 KRITGLAFSNTLNV---LVSSGADS---------QLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-  994 (1134)
Q Consensus       928 ~~V~~l~~s~d~~~---l~s~s~Dg---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-  994 (1134)
                      ..=..+.|++-|.-   |++...|.         ++++.++++ +   ...+.... .    ++|.++.|+|+|+-+++ 
T Consensus       218 adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g-~---s~~V~L~k-~----GPVhdv~W~~s~~EF~Vv  288 (566)
T KOG2315|consen  218 ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG-E---SVSVPLLK-E----GPVHDVTWSPSGREFAVV  288 (566)
T ss_pred             cceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC-c---eEEEecCC-C----CCceEEEECCCCCEEEEE
Confidence            22234677766653   23333343         588888773 2   12233321 1    46999999999998887 


Q ss_pred             -E-eeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecC---CcEEEeecCCCcceeecCCCcccCCCCC
Q 001163          995 -V-HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEE---GSVGVLTASTLRLRCRINPTAYLPTNPS 1069 (1134)
Q Consensus       995 -~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D---g~i~vwd~~~~~~~~~~~~~~~~~~~h~ 1069 (1134)
                       | .-..+.|||++ +..+..+.    .++-..+.|+|.|++|+.++-+   |.|-|||+.+.+++..+....       
T Consensus       289 yGfMPAkvtifnlr-~~~v~df~----egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~-------  356 (566)
T KOG2315|consen  289 YGFMPAKVTIFNLR-GKPVFDFP----EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN-------  356 (566)
T ss_pred             EecccceEEEEcCC-CCEeEeCC----CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC-------
Confidence             4 45789999987 56665654    5677899999999998877754   889999999988887766332       


Q ss_pred             CCceeEEEEecCCCCCEEEEEec------CCcEEEEeCCCCC
Q 001163         1070 LRVYPLVIAGNPTDPNQFALGLT------DGGVYIIEPLEAE 1105 (1134)
Q Consensus      1070 ~~v~~~~~~~~p~~~~~l~s~~~------Dg~v~vW~~~~~~ 1105 (1134)
                          +..+.|+| ||.+|++++.      |+.++||++....
T Consensus       357 ----tt~~eW~P-dGe~flTATTaPRlrvdNg~KiwhytG~~  393 (566)
T KOG2315|consen  357 ----TTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHYTGSL  393 (566)
T ss_pred             ----ceEEEEcC-CCcEEEEEeccccEEecCCeEEEEecCce
Confidence                33458999 7898888776      6789999997443

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=5e-11  Score=126.58  Aligned_cols=315  Identities=11%  Similarity=0.166  Sum_probs=201.7

Q ss_pred             eeEeCCCCCCcccccCCCC------CceeEEEeecCCCeeEEEEcCCCCeEEEEEe----------CCCcEEEEecCCcc
Q 001163          327 PVAYTPQSLGQSSYSTDDL------PKTVVMTLNQGSAVKSMDFHPVQQILLVVGT----------NMGDVMLWEVGSRE  390 (1134)
Q Consensus       327 ~~~~s~~~~~l~~~~~d~~------~~~~~~~~~h~~~V~~v~fsp~g~~lla~gs----------~dg~v~iwd~~~~~  390 (1134)
                      -+.|||.|.+|++.-..+.      .-..++.|.|. .|.-+.|||+.+||+.-+.          ....++|||+.+|.
T Consensus       215 yv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~  293 (698)
T KOG2314|consen  215 YVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGL  293 (698)
T ss_pred             eEEecCCceEEEEEeccceeeecCccHHHHHhccCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccc
Confidence            4789999999988755443      22334444454 6889999999998743331          12579999999998


Q ss_pred             ceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEE
Q 001163          391 RIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLA  470 (1134)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~  470 (1134)
                      ..+.+.+                +.+....=.-..||.|++|+|--..| +|.||+..+-..+.. ..+  .-..|....
T Consensus       294 lkrsF~~----------------~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~-Ksl--ki~gIr~Fs  353 (698)
T KOG2314|consen  294 LKRSFPV----------------IKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDK-KSL--KISGIRDFS  353 (698)
T ss_pred             hhcceec----------------cCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecc-ccc--CCccccCcc
Confidence            8764322                11111122237899999999988775 499999876443321 112  234588899


Q ss_pred             EecCCCceEEEEEeC--C---CeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEe----------cCCCcEEE
Q 001163          471 FSYPNKQLSVVTCGE--D---RVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFST----------ATDGKIKA  535 (1134)
Q Consensus       471 ~s~~~~~~~l~s~s~--d---~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----------s~dg~i~v  535 (1134)
                      |+|.+.  +||--..  +   ..+.+-.+.+++.+++-.-|.  |..+..+...+|.+|+.-          +.-..+.|
T Consensus       354 wsP~~~--llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn--VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eI  429 (698)
T KOG2314|consen  354 WSPTSN--LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN--VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEI  429 (698)
T ss_pred             cCCCcc--eEEEEcccccCCcceEEEEecCccceeeecccee--eeccEEEeccCCcEEEEEEEeeccccccceEeeEEE
Confidence            999988  5554332  1   256677777777776655443  444555556666777542          11123556


Q ss_pred             EecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCC-C---eeEEEecCCCCCceEEEEEcCCCC
Q 001163          536 WLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE-G---AVKRTYHGLGKRSVGVVQFDTTKN  611 (1134)
Q Consensus       536 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~---~~~~~~~~~~~~~v~~~~~~~~~~  611 (1134)
                      +.++..........-...|...+|-|.|..+++.+.+ +....+.+|.+++ .   +.+..+..   ...+.+.|+|.|.
T Consensus       430 frireKdIpve~velke~vi~FaWEP~gdkF~vi~g~-~~k~tvsfY~~e~~~~~~~lVk~~dk---~~~N~vfwsPkG~  505 (698)
T KOG2314|consen  430 FRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGN-TVKNTVSFYAVETNIKKPSLVKELDK---KFANTVFWSPKGR  505 (698)
T ss_pred             EEeeccCCCceeeecchheeeeeeccCCCeEEEEEcc-ccccceeEEEeecCCCchhhhhhhcc---cccceEEEcCCCc
Confidence            6666544444333334578889999999988876644 3355688888773 2   23333333   2567899999999


Q ss_pred             EEEEEe---CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECC------CcEEEEEcc
Q 001163          612 RFLAAG---DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND------NGIKILANA  672 (1134)
Q Consensus       612 ~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d------g~i~iw~~~  672 (1134)
                      +++.+.   ..|.+.++|.........- ...| ...+.+.|.|.|+++++++.-      ..-++|++.
T Consensus       506 fvvva~l~s~~g~l~F~D~~~a~~k~~~-~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq  573 (698)
T KOG2314|consen  506 FVVVAALVSRRGDLEFYDTDYADLKDTA-SPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ  573 (698)
T ss_pred             EEEEEEecccccceEEEecchhhhhhcc-Cccc-cccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence            998865   5789999998753322221 1122 245789999999999998753      344555544

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.42  E-value=2.4e-07  Score=114.11  Aligned_cols=518  Identities=13%  Similarity=0.148  Sum_probs=289.3

Q ss_pred             CCEEEEEEcCCCCEE--EEEeCCC--EEEEEEccCCceeeeeeeee-----cCCCCEEEEEEecCCCceEEEEEeCCCeE
Q 001163          419 ASVNRVMWSPDGTLF--GVAYSKH--IVHLYTYHGGDELRNHLEIE-----AHVGSVNDLAFSYPNKQLSVVTCGEDRVI  489 (1134)
Q Consensus       419 ~~V~~l~~spd~~~l--as~s~dg--~v~iwd~~~~~~~~~~~~l~-----~h~~~V~~v~~s~~~~~~~l~s~s~d~~i  489 (1134)
                      ..+...+|.+..+.+  +++....  .|.+..............+.     ...+.|.++.|.++..  .++.+..+|.|
T Consensus        22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~--~l~~~~~~Gdi   99 (928)
T PF04762_consen   22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSE--SLCIALASGDI   99 (928)
T ss_pred             cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCC--cEEEEECCceE
Confidence            467778888755544  3333332  34444433332222222332     3456799999999998  57777778889


Q ss_pred             EEE----ECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecC------------C-C----------C
Q 001163          490 KVW----DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD------------N-L----------G  542 (1134)
Q Consensus       490 ~iw----d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~------------~-~----------~  542 (1134)
                      .+.    |..+.. +.....-...|.+++|+|+.  .+|+..+.++++.+-+-+            . +          +
T Consensus       100 ~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~--Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGk  176 (928)
T PF04762_consen  100 ILVREDPDPDEDE-IEIVGSVDSGILAASWSPDE--ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGK  176 (928)
T ss_pred             EEEEccCCCCCce-eEEEEEEcCcEEEEEECCCc--CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCc
Confidence            888    433332 22222346789999997655  788888888887765321            0 0          0


Q ss_pred             ceeeecC------------------------CCCCeeEEEECcCCCEEEEEecCCC-C-CeEEEEEeCCCCeeEEEecCC
Q 001163          543 SRVDYDA------------------------PGHSSTMMAYSADGARLFSCGTNKE-G-ESYLVEWNESEGAVKRTYHGL  596 (1134)
Q Consensus       543 ~~~~~~~------------------------~~~~v~~~~~s~~~~~l~~~~~~~~-~-~~~i~~wd~~~~~~~~~~~~~  596 (1134)
                      ....+.+                        ....-..++|-.||.++++.+.+.. + ...+++|+-+ |....+-...
T Consensus       177 KeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v  255 (928)
T PF04762_consen  177 KETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPV  255 (928)
T ss_pred             ccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccC
Confidence            0000000                        1123457889999999999886332 2 5789999965 6655544422


Q ss_pred             CCCceEEEEEcCCCCEEEEEeC---CCeEEEEEcCCCceeEEEecC--CCCCCcceEEEcCCCcEEEEEECCCcEEEEEc
Q 001163          597 GKRSVGVVQFDTTKNRFLAAGD---EFMIKFWDMDNVNLLASIDAD--GGLQASPCIRFNKEGILLAVSTNDNGIKILAN  671 (1134)
Q Consensus       597 ~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~  671 (1134)
                      .+ --..++|-|.|+.+++...   ...|.+|.-+ |-.-..+...  .....|..+.|++|+..||+...|. |.+|..
T Consensus       256 ~g-Le~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~  332 (928)
T PF04762_consen  256 DG-LEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTR  332 (928)
T ss_pred             CC-ccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEe
Confidence            22 3456899999999998763   3456777643 3222222221  2345789999999999999987665 999988


Q ss_pred             cCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccccccccccc
Q 001163          672 ADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKS  751 (1134)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  751 (1134)
                      .+.+-.++.--...                                                                  
T Consensus       333 ~NYHWYLKqei~~~------------------------------------------------------------------  346 (928)
T PF04762_consen  333 SNYHWYLKQEIRFS------------------------------------------------------------------  346 (928)
T ss_pred             eCCEEEEEEEEEcc------------------------------------------------------------------
Confidence            77643333221100                                                                  


Q ss_pred             ceeeecccCCccceeccccCCccccccEEEEEEecC-CceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCC
Q 001163          752 RIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNS-GLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSG  830 (1134)
Q Consensus       752 ~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~  830 (1134)
                                             ....+..+.|+|. ...|...+.+|.+..+++.                  |++..+
T Consensus       347 -----------------------~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~------------------~~v~~s  385 (928)
T PF04762_consen  347 -----------------------SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA------------------WDVSRS  385 (928)
T ss_pred             -----------------------CCCCCCceEECCCCCCEEEEEecCCcEEEEEEE------------------EEEEec
Confidence                                   1112223566664 3345555555666555432                  111111


Q ss_pred             cccccCCCCCCCCCCeeEEEEcC-CCCeEEEeeCCeEEEEEccCCe-----EEEEecCCCCCeEEEEEcCCCCcEEEEEe
Q 001163          831 ILMTNDISDTNPEDAVPCFALSK-NDSYVMSASGGKISLFNMMTFK-----TMTTFMPPPPAATFLAFHPQDNNIIAIGM  904 (1134)
Q Consensus       831 ~~~~~~~~~~~h~~~v~~v~~s~-dg~~la~~sdg~i~lwd~~~~~-----~~~~~~~~~~~v~~l~~sp~~~~~la~g~  904 (1134)
                      ..                  .+| |...+++.++.++.+-.+...-     +...+. -...|.+++|++ ++..+|+-.
T Consensus       386 ~~------------------~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~-~~~~~avl~  445 (928)
T PF04762_consen  386 PG------------------SSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSP-SNSRFAVLT  445 (928)
T ss_pred             CC------------------CCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeC-CCCeEEEEE
Confidence            10                  011 2223444444556666654332     112233 356899999999 676799999


Q ss_pred             CCCcEEEEEcccceEE--------Eecc----------CccCceEEEEEeeCCCEEEEEeCC---CcEEEEECCCCcccc
Q 001163          905 EDSSIQIYNVRVDEVK--------TKLK----------GHQKRITGLAFSNTLNVLVSSGAD---SQLCVWSTDGWEKQA  963 (1134)
Q Consensus       905 ~dg~i~iwd~~~~~~~--------~~l~----------~h~~~V~~l~~s~d~~~l~s~s~D---g~i~iwd~~~~~~~~  963 (1134)
                      .||.|.+|........        ..+.          .-...+..++|..+...++....+   ..+.++++...+.. 
T Consensus       446 ~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-  524 (928)
T PF04762_consen  446 SDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENS-  524 (928)
T ss_pred             CCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCc-
Confidence            9999999986443211        1111          123457888998888777766654   57888887443211 


Q ss_pred             ceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCcccc-eeeccCCCccCEEEEEEccCCC---EEEEE
Q 001163          964 SKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLECL-KQFVPREASGPITHATYSCDSQ---SIYVA 1038 (1134)
Q Consensus       964 ~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~~~~-~~~~~~~h~~~v~~~~~s~dg~---~l~s~ 1038 (1134)
                      ..........    ..+..+...++...++. ..+|.+..++....... ..+.  . .-.-..++...+..   .++.-
T Consensus       525 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp--~-~c~~~~~~~~~~~~~~~~~~GL  597 (928)
T PF04762_consen  525 ASVESSTEVD----GVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFP--Q-PCPWMEVCQINGSEDKRVLFGL  597 (928)
T ss_pred             eeEEEEeccC----ceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCC--C-CCcEEEEEEECCccceeEEEEE
Confidence            1111111111    22444444555543444 67888887666543321 1222  1 11122233232332   34444


Q ss_pred             ecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCC
Q 001163         1039 FEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPL 1102 (1134)
Q Consensus      1039 s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~ 1102 (1134)
                      +..|.+++    ++..+             ...+++..+.     +.+|+.......+++..+.
T Consensus       598 s~~~~Ly~----n~~~l-------------a~~~tSF~v~-----~~~Ll~TT~~h~l~fv~L~  639 (928)
T PF04762_consen  598 SSNGRLYA----NSRLL-------------ASNCTSFAVT-----DSFLLFTTTQHTLKFVHLN  639 (928)
T ss_pred             CCCCEEEE----CCEEE-------------ecCCceEEEE-----cCEEEEEecCceEEEEECc
Confidence            44444442    22222             1335555443     4677777778889999998

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=2.9e-11  Score=138.69  Aligned_cols=225  Identities=16%  Similarity=0.181  Sum_probs=144.2

Q ss_pred             EEEeecCCCeeEEEEcCCCCeEEEEEeCC--CcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc
Q 001163          350 VMTLNQGSAVKSMDFHPVQQILLVVGTNM--GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS  427 (1134)
Q Consensus       350 ~~~~~h~~~V~~v~fsp~g~~lla~gs~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  427 (1134)
                      .+...+...+.+.+|||||++|+++...+  ..|.+||+.+++...                    +....+.+.+.+||
T Consensus       189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g~~~~~~~S  248 (427)
T PRK02889        189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKGSNSAPAWS  248 (427)
T ss_pred             eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCCCccceEEC
Confidence            33445778899999999999775554333  469999999886533                    22233456789999


Q ss_pred             CCCCEEEE-EeCCCEEEEEEc--cCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEe-CCCeEEEEEC--CCCceeE
Q 001163          428 PDGTLFGV-AYSKHIVHLYTY--HGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-EDRVIKVWDA--VTGTKQY  501 (1134)
Q Consensus       428 pd~~~las-~s~dg~v~iwd~--~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s-~d~~i~iwd~--~~~~~~~  501 (1134)
                      |||+.|+. .+.+|...||.+  .++. .+   .+..|.+.+....|+|||+.  |+..+ .++...||.+  .+++...
T Consensus       249 PDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~--l~f~s~~~g~~~Iy~~~~~~g~~~~  322 (427)
T PRK02889        249 PDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS--IYFTSDRGGAPQIYRMPASGGAAQR  322 (427)
T ss_pred             CCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE--EEEEecCCCCcEEEEEECCCCceEE
Confidence            99998874 567777666654  4443 22   35556666778899999994  44333 4556666654  4554322


Q ss_pred             EecCCCcCEEEEeccccCCccEEEEecCCC---cEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeE
Q 001163          502 IFEGHESPVYSICPHHKENIQFIFSTATDG---KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESY  578 (1134)
Q Consensus       502 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~  578 (1134)
                       +..+........|+  ++|++|+..+.++   .|.+||+.+++.... .. ........|+|||+.|+..+.++ +...
T Consensus       323 -lt~~g~~~~~~~~S--pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l-t~-~~~~~~p~~spdg~~l~~~~~~~-g~~~  396 (427)
T PRK02889        323 -VTFTGSYNTSPRIS--PDGKLLAYISRVGGAFKLYVQDLATGQVTAL-TD-TTRDESPSFAPNGRYILYATQQG-GRSV  396 (427)
T ss_pred             -EecCCCCcCceEEC--CCCCEEEEEEccCCcEEEEEEECCCCCeEEc-cC-CCCccCceECCCCCEEEEEEecC-CCEE
Confidence             22122223345564  5567887666544   599999987654432 22 23346789999999999887654 4556


Q ss_pred             EEEEeCCCCeeEEEecCCCCCceEEEEEcC
Q 001163          579 LVEWNESEGAVKRTYHGLGKRSVGVVQFDT  608 (1134)
Q Consensus       579 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~  608 (1134)
                      +.+.+. ++.....+..+.. .+...+|+|
T Consensus       397 l~~~~~-~g~~~~~l~~~~g-~~~~p~wsp  424 (427)
T PRK02889        397 LAAVSS-DGRIKQRLSVQGG-DVREPSWGP  424 (427)
T ss_pred             EEEEEC-CCCceEEeecCCC-CCCCCccCC
Confidence            777777 4555555544333 455667766

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.39  E-value=1e-09  Score=116.04  Aligned_cols=345  Identities=11%  Similarity=0.129  Sum_probs=205.0

Q ss_pred             EEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEE
Q 001163          534 KAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRF  613 (1134)
Q Consensus       534 ~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  613 (1134)
                      .+|+..+......+....-++..+++||.|.+|++....+     |.+|+-..+..+..+...   .|..+.|+|.+++|
T Consensus        15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-----V~~~~g~~~~~l~~~~~~---~V~~~~fSP~~kYL   86 (561)
T COG5354          15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG-----VECWGGPSKAKLVRFRHP---DVKYLDFSPNEKYL   86 (561)
T ss_pred             EeecCccccccccccccCcchhheeecCcchheehhhccc-----eEEccccchhheeeeecC---CceecccCccccee
Confidence            3455544444444444555888999999999999875433     999998877655555432   67889999999999


Q ss_pred             EEEeCCC---------------eEEEEEcCCCceeEEEecCCCCCCcc-eEEEcCCCcEEEEEECCCcEEEEEccCCcee
Q 001163          614 LAAGDEF---------------MIKFWDMDNVNLLASIDADGGLQASP-CIRFNKEGILLAVSTNDNGIKILANADGIRL  677 (1134)
Q Consensus       614 ~~~~~dg---------------~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~  677 (1134)
                      .+-+..+               .+.+||..+|..+..+.......... -+.|+-+..++|-. -...+.|+++... ..
T Consensus        87 ~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n-~~  164 (561)
T COG5354          87 VTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDN-IE  164 (561)
T ss_pred             eeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCc-cc
Confidence            9876543               48999999999998887553322233 67788777666544 2346777775221 00


Q ss_pred             EEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeec
Q 001163          678 LRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLT  757 (1134)
Q Consensus       678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~  757 (1134)
                           .+                                                                         
T Consensus       165 -----~~-------------------------------------------------------------------------  166 (561)
T COG5354         165 -----EH-------------------------------------------------------------------------  166 (561)
T ss_pred             -----cC-------------------------------------------------------------------------
Confidence                 00                                                                         


Q ss_pred             ccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCC
Q 001163          758 EITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDI  837 (1134)
Q Consensus       758 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  837 (1134)
                            ....+      ....|....++|.|.       ...+..|.                      ++.+       
T Consensus       167 ------p~~~l------r~~gi~dFsisP~~n-------~~~la~~t----------------------PEk~-------  198 (561)
T COG5354         167 ------PFKNL------RPVGILDFSISPEGN-------HDELAYWT----------------------PEKL-------  198 (561)
T ss_pred             ------chhhc------cccceeeEEecCCCC-------CceEEEEc----------------------cccC-------
Confidence                  00000      123456666776652       11123331                      1000       


Q ss_pred             CCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEE-----------eCC
Q 001163          838 SDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIG-----------MED  906 (1134)
Q Consensus       838 ~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-----------~~d  906 (1134)
                                             +..+++++|.+..++.+.+-.-....-..+.|.+ .|.+|.+-           ...
T Consensus       199 -----------------------~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t~~ksnKsyfge  254 (561)
T COG5354         199 -----------------------NKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQV-LGKYLLVLVMTHTKSNKSYFGE  254 (561)
T ss_pred             -----------------------CCCcEEEEEEccCCCeeeeeeeEeecccEEEEec-CCceEEEEEEEeeecccceecc
Confidence                                   0012233333332222222110111112233333 22222110           123


Q ss_pred             CcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEe--CCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEE
Q 001163          907 SSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSG--ADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQ  984 (1134)
Q Consensus       907 g~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~  984 (1134)
                      ..++|+++.... +.....-.++|...+|.|+++.+++.+  .+..+.++|+.+.-     ..-.++.      .-..+.
T Consensus       255 snLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl-----~~~~Pe~------~rNT~~  322 (561)
T COG5354         255 SNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL-----RFYFPEQ------KRNTIF  322 (561)
T ss_pred             ceEEEEeecccc-cceeccccccceeeeecccCCceeEEecccccceeecccccce-----EEecCCc------cccccc
Confidence            468888877333 333335678999999999998877654  68889999998731     2222332      235688


Q ss_pred             EcCCCCEEEE-E---eeceEEEEeCCCcccce-eeccCCCccCEEEEEEccCCCEEEEEe------cCCcEEEeecCCCc
Q 001163          985 FHLDQTHLLA-V---HETQIAIYEAPKLECLK-QFVPREASGPITHATYSCDSQSIYVAF------EEGSVGVLTASTLR 1053 (1134)
Q Consensus       985 fs~dg~~l~~-~---~d~~i~iwd~~~~~~~~-~~~~~~h~~~v~~~~~s~dg~~l~s~s------~Dg~i~vwd~~~~~ 1053 (1134)
                      |||.++++++ +   ..|.+.+||....-... .+.    ...-+-+.|||||+++.+..      .|..|.|||+....
T Consensus       323 fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~----~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~  398 (561)
T COG5354         323 FSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN----GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK  398 (561)
T ss_pred             ccCcccEEEEecCCccccceEEeccCCceEEEEEee----cCCceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence            9999999988 4   34889999988654443 444    23445667999999987665      37889999987654


Q ss_pred             c
Q 001163         1054 L 1054 (1134)
Q Consensus      1054 ~ 1054 (1134)
                      .
T Consensus       399 ~  399 (561)
T COG5354         399 V  399 (561)
T ss_pred             h
Confidence            4

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.39  E-value=1.5e-12  Score=135.20  Aligned_cols=232  Identities=13%  Similarity=0.141  Sum_probs=189.9

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC
Q 001163          418 TASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG  497 (1134)
Q Consensus       418 ~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~  497 (1134)
                      ...-..+.++.+|+.|+.|+..|.|..+|..+++....+   . -...|..+.|..+.+  +++. ...+.+.||| ..|
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei---~-v~Etv~Dv~~LHneq--~~AV-AQK~y~yvYD-~~G  200 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI---N-VMETVRDVTFLHNEQ--FFAV-AQKKYVYVYD-NNG  200 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccceeeeee---e-hhhhhhhhhhhcchH--HHHh-hhhceEEEec-CCC
Confidence            345678999999999999999999999999998755432   2 335689999998887  4444 4567899999 889


Q ss_pred             ceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCe
Q 001163          498 TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGES  577 (1134)
Q Consensus       498 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~  577 (1134)
                      ..++.++.| ..|..+.|-|..  -+|++++..|.++.-|+..++.+..+....+.+..|+-+|-+..+-+|..    .+
T Consensus       201 tElHClk~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----nG  273 (545)
T KOG1272|consen  201 TELHCLKRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----NG  273 (545)
T ss_pred             cEEeehhhc-Cchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----Cc
Confidence            999999866 468888887665  67889999999999999999988888888888999999998888877754    55


Q ss_pred             EEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEE
Q 001163          578 YLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILL  657 (1134)
Q Consensus       578 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l  657 (1134)
                      +|.+|...+.+++..+..|.. +|.++++.++|.++++.|.|..++|||++.-..+.++..   ......+++|..| +|
T Consensus       274 tVSlWSP~skePLvKiLcH~g-~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t---p~~a~~ls~Sqkg-lL  348 (545)
T KOG1272|consen  274 TVSLWSPNSKEPLVKILCHRG-PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT---PHPASNLSLSQKG-LL  348 (545)
T ss_pred             eEEecCCCCcchHHHHHhcCC-CcceEEECCCCcEEeecccccceeEeeeccccccceeec---CCCcccccccccc-ce
Confidence            799999999999999999987 999999999999999999999999999998887766654   2245678888655 44


Q ss_pred             EEEECCCcEEEEE
Q 001163          658 AVSTNDNGIKILA  670 (1134)
Q Consensus       658 ~~~~~dg~i~iw~  670 (1134)
                      | .+....+.||.
T Consensus       349 A-~~~G~~v~iw~  360 (545)
T KOG1272|consen  349 A-LSYGDHVQIWK  360 (545)
T ss_pred             e-eecCCeeeeeh
Confidence            4 34445888995

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.38  E-value=7.2e-11  Score=120.63  Aligned_cols=273  Identities=11%  Similarity=0.114  Sum_probs=190.2

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEe-CCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGT-NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF  433 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l  433 (1134)
                      ....|++++|--+++.=+..+. .|-.+....+........    +|+++         .....+.+|..++..  ...|
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~---------~~~l~~~~I~gl~~~--dg~L  118 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAK---------TVSLGTKSIKGLKLA--DGTL  118 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccc----ccccc---------ccccccccccchhhc--CCEE
Confidence            4567788888877654333443 555666666655544332    12221         123445566666653  3467


Q ss_pred             EEEeCCCEEEEEEccCCceee-eeeeeecCCCCEEEEEEecCCCceEEEEEeCC--CeEEEEECCCCceeEEecC-----
Q 001163          434 GVAYSKHIVHLYTYHGGDELR-NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED--RVIKVWDAVTGTKQYIFEG-----  505 (1134)
Q Consensus       434 as~s~dg~v~iwd~~~~~~~~-~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d--~~i~iwd~~~~~~~~~~~~-----  505 (1134)
                      .+|-.+|.+.+|..+.+..-. ....+..+ ..+..|.-++.... ++++||..  ..+.|||+.+.+.+.+-+.     
T Consensus       119 itc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~  196 (412)
T KOG3881|consen  119 ITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDR  196 (412)
T ss_pred             EEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCcc
Confidence            777889999999998543111 11123333 45677777776665 67779998  8999999998866654332     


Q ss_pred             --CCc--CEEEEeccccCCccEEEEecCCCcEEEEecCCCC-ceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEE
Q 001163          506 --HES--PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG-SRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLV  580 (1134)
Q Consensus       506 --h~~--~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~  580 (1134)
                        -.-  .++++.|.+..+...|++++.-+.|++||...+. +...+....++++++...|+++.++++..    .+.+.
T Consensus       197 L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~  272 (412)
T KOG3881|consen  197 LGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLA  272 (412)
T ss_pred             ccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhh
Confidence              122  3455666655446899999999999999998654 34456667789999999999999999854    44599


Q ss_pred             EEeCCCCeeEEE-ecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcC
Q 001163          581 EWNESEGAVKRT-YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK  652 (1134)
Q Consensus       581 ~wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp  652 (1134)
                      .+|.+.++.... +.+..+ .++++..+|.+.+++++|-|+.|+|+|..+.+++...-.   ....+++.+.+
T Consensus       273 ~FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv---Ks~lt~il~~~  341 (412)
T KOG3881|consen  273 KFDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV---KSRLTFILLRD  341 (412)
T ss_pred             eecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh---hccccEEEecC
Confidence            999999998887 666665 899999999999999999999999999999777665533   22455665554

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=1.4e-10  Score=133.99  Aligned_cols=225  Identities=12%  Similarity=0.042  Sum_probs=147.6

Q ss_pred             EEEeecCCCeeEEEEcCCCCeEEEEEe--CCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc
Q 001163          350 VMTLNQGSAVKSMDFHPVQQILLVVGT--NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS  427 (1134)
Q Consensus       350 ~~~~~h~~~V~~v~fsp~g~~lla~gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  427 (1134)
                      .....+...+.+.+|||||++|+.+..  .+..|.+||+.+++...                    +..+.+.+.+.+||
T Consensus       195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~~~g~~~~~~~S  254 (435)
T PRK05137        195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGNFPGMTFAPRFS  254 (435)
T ss_pred             EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eecCCCcccCcEEC
Confidence            333457889999999999997765543  34689999998886432                    34456678899999


Q ss_pred             CCCCEEEE-EeCCCE--EEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEe-CC--CeEEEEECCCCceeE
Q 001163          428 PDGTLFGV-AYSKHI--VHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-ED--RVIKVWDAVTGTKQY  501 (1134)
Q Consensus       428 pd~~~las-~s~dg~--v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s-~d--~~i~iwd~~~~~~~~  501 (1134)
                      |||+.|+. .+.++.  |.+||+.+++..    .+..+........|+|||+.  |+..+ .+  ..|.+||+.+++.. 
T Consensus       255 PDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy~~d~~g~~~~-  327 (435)
T PRK05137        255 PDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLYVMNADGSNPR-  327 (435)
T ss_pred             CCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCCeEEEEECCCCCeE-
Confidence            99998764 455554  777898887643    35556667788999999994  55444 33  36888897766543 


Q ss_pred             EecCCCcCEEEEeccccCCccEEEEecCC---CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCC--
Q 001163          502 IFEGHESPVYSICPHHKENIQFIFSTATD---GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGE--  576 (1134)
Q Consensus       502 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~--  576 (1134)
                      .+..+...+....|++  +|+.|+..+.+   ..|.+||+..... ..+. ....+....|+|||+.|+..+.+....  
T Consensus       328 ~lt~~~~~~~~~~~Sp--dG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~  403 (435)
T PRK05137        328 RISFGGGRYSTPVWSP--RGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGA  403 (435)
T ss_pred             EeecCCCcccCeEECC--CCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCc
Confidence            3433444555666754  55777665543   3577888754433 2222 233567889999999998776543221  


Q ss_pred             eEEEEEeCCCCeeEEEecCCCCCceEEEEEcC
Q 001163          577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT  608 (1134)
Q Consensus       577 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~  608 (1134)
                      ..++++|+..+.. ..+.. . ..+...+|+|
T Consensus       404 ~~L~~~dl~g~~~-~~l~~-~-~~~~~p~Wsp  432 (435)
T PRK05137        404 PKLYTVDLTGRNE-REVPT-P-GDASDPAWSP  432 (435)
T ss_pred             ceEEEEECCCCce-EEccC-C-CCccCcccCC
Confidence            4688889876554 33332 1 1345556665

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.36  E-value=2.2e-10  Score=114.73  Aligned_cols=193  Identities=16%  Similarity=0.271  Sum_probs=123.1

Q ss_pred             CCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCc-----eeEEecCCC------------cCEEEEeccccCCccEEE
Q 001163          463 VGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-----KQYIFEGHE------------SPVYSICPHHKENIQFIF  525 (1134)
Q Consensus       463 ~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~-----~~~~~~~h~------------~~v~~~~~~~~~~~~~l~  525 (1134)
                      ..-|.++.|...|.  +|+||..+|.|.++.-....     ....++.|.            ..|..+.|....+...++
T Consensus        25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL  102 (433)
T KOG1354|consen   25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL  102 (433)
T ss_pred             hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence            34688999999999  89999999999998633221     223444443            357778888888888888


Q ss_pred             EecCCCcEEEEecCCCCceee-----ecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCc
Q 001163          526 STATDGKIKAWLYDNLGSRVD-----YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS  600 (1134)
Q Consensus       526 s~s~dg~i~vwd~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~  600 (1134)
                      ..+.|.+|++|.+........     .......+.++..      .+.+..+.     +.     ...+.+.+...+...
T Consensus       103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~------p~~~~~~~-----~v-----ea~prRv~aNaHtyh  166 (433)
T KOG1354|consen  103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL------PVEGRHDL-----EV-----EASPRRVYANAHTYH  166 (433)
T ss_pred             EecCCcceeeeeeeccccccccccccccCCCCccceeec------eeeccccc-----ee-----eeeeeeeccccceeE
Confidence            899999999998875444331     0111112222221      01110000     00     123445565555558


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc-eeEEEecCCC-----CCCcceEEEcCC-CcEEEEEECCCcEEEEEccC
Q 001163          601 VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN-LLASIDADGG-----LQASPCIRFNKE-GILLAVSTNDNGIKILANAD  673 (1134)
Q Consensus       601 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~-----~~~v~~v~~sp~-~~~l~~~~~dg~i~iw~~~~  673 (1134)
                      +.++.++.|+..++++. |=.|.+|+++--. ..........     ..-|++..|+|. -++++-.+..|+|++-|+..
T Consensus       167 iNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~  245 (433)
T KOG1354|consen  167 INSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ  245 (433)
T ss_pred             eeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence            99999999998888764 6789999987432 2222221111     224778889994 46777788899999998764


Q ss_pred             C
Q 001163          674 G  674 (1134)
Q Consensus       674 ~  674 (1134)
                      .
T Consensus       246 ~  246 (433)
T KOG1354|consen  246 S  246 (433)
T ss_pred             h
Confidence            3

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.35  E-value=5.6e-11  Score=118.98  Aligned_cols=155  Identities=12%  Similarity=0.226  Sum_probs=108.2

Q ss_pred             EEEEEcCCCCcEEEEEeC----------CCcEEEEEccc-ceEEEeccC-ccCceEEEEEeeCCCEEEEE--eCCCcEEE
Q 001163          888 TFLAFHPQDNNIIAIGME----------DSSIQIYNVRV-DEVKTKLKG-HQKRITGLAFSNTLNVLVSS--GADSQLCV  953 (1134)
Q Consensus       888 ~~l~~sp~~~~~la~g~~----------dg~i~iwd~~~-~~~~~~l~~-h~~~V~~l~~s~d~~~l~s~--s~Dg~i~i  953 (1134)
                      ..+.|++ .|.+|++-..          -+...+|.++. +..+..+.- ..++|.+++|+|+|+.++..  ..++.|.+
T Consensus         9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence            4567888 5655544332          12455555532 233444433 34579999999999987654  45779999


Q ss_pred             EECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEe----eceEEEEeCCCcccceeeccCCCccCEEEEEEc
Q 001163          954 WSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVH----ETQIAIYEAPKLECLKQFVPREASGPITHATYS 1029 (1134)
Q Consensus       954 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~----d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s 1029 (1134)
                      ||++. +    .......      ..+..+.|||+|++|+++.    .|.|.+||+.+.+.+....    ...++.++||
T Consensus        88 yd~~~-~----~i~~~~~------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~~~~t~~~Ws  152 (194)
T PF08662_consen   88 YDVKG-K----KIFSFGT------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----HSDATDVEWS  152 (194)
T ss_pred             EcCcc-c----EeEeecC------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc----cCcEEEEEEc
Confidence            99973 2    1222222      2467899999999999842    4789999999888887765    3457899999


Q ss_pred             cCCCEEEEEec------CCcEEEeecCCCcceeecC
Q 001163         1030 CDSQSIYVAFE------EGSVGVLTASTLRLRCRIN 1059 (1134)
Q Consensus      1030 ~dg~~l~s~s~------Dg~i~vwd~~~~~~~~~~~ 1059 (1134)
                      |||++|++++.      |+.++||+.. |+.+.+..
T Consensus       153 PdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~  187 (194)
T PF08662_consen  153 PDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP  187 (194)
T ss_pred             CCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence            99999998875      7889999985 66655443

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.35  E-value=4.3e-09  Score=113.10  Aligned_cols=204  Identities=10%  Similarity=0.083  Sum_probs=124.1

Q ss_pred             EEEEcCCCCeEEEee---CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEccc-ceEE-E-
Q 001163          848 CFALSKNDSYVMSAS---GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV-DEVK-T-  921 (1134)
Q Consensus       848 ~v~~s~dg~~la~~s---dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~-~~~~-~-  921 (1134)
                      .++++|||++|.+..   ++.|.+.|+.+++.+.++.-.. ...-...++ ++.+  +-+.||......+.+ |+.. . 
T Consensus       109 ~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~~~--~~~~Dg~~~~v~~d~~g~~~~~~  184 (352)
T TIGR02658       109 MTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DTFF--MHCRDGSLAKVGYGTKGNPKIKP  184 (352)
T ss_pred             eEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-CccE--EEeecCceEEEEecCCCceEEee
Confidence            566777777777654   4678888888888777766422 111122221 1111  112233333322221 1111 1 


Q ss_pred             --eccCccCceE-EEEEee-CCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCC----CCCCCceEEEEcCCCCEEE
Q 001163          922 --KLKGHQKRIT-GLAFSN-TLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRT----ASALADTRVQFHLDQTHLL  993 (1134)
Q Consensus       922 --~l~~h~~~V~-~l~~s~-d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~l~fs~dg~~l~  993 (1134)
                        .+..-..++. .-.|++ +|+++....+ |+|.+-|+...+..............    -......-+++++|++.++
T Consensus       185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly  263 (352)
T TIGR02658       185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY  263 (352)
T ss_pred             eeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence              1111001100 004566 8888887776 99999997665433323332221110    0114455699999999998


Q ss_pred             EEe---e--------ceEEEEeCCCcccceeeccCCCccCEEEEEEccCCC-EEEEEe-cCCcEEEeecCCCcceeecC
Q 001163          994 AVH---E--------TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQ-SIYVAF-EEGSVGVLTASTLRLRCRIN 1059 (1134)
Q Consensus       994 ~~~---d--------~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~s~s-~Dg~i~vwd~~~~~~~~~~~ 1059 (1134)
                      +..   .        +.|.++|..+++.+..+..   ...+..+++||||+ +|++.+ .++.|.++|+.+++.+..+.
T Consensus       264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             EEecCCccccccCCCCEEEEEECCCCeEEEEEeC---CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence            832   1        5799999999999998875   35899999999999 887666 57889999999999988773

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.34  E-value=3e-11  Score=120.86  Aligned_cols=147  Identities=18%  Similarity=0.295  Sum_probs=104.8

Q ss_pred             eeEeCCCCCCcccccC---CCC---------------CceeEEEe--ecCCCeeEEEEcCCCCeEEEE-EeCCCcEEEEe
Q 001163          327 PVAYTPQSLGQSSYST---DDL---------------PKTVVMTL--NQGSAVKSMDFHPVQQILLVV-GTNMGDVMLWE  385 (1134)
Q Consensus       327 ~~~~s~~~~~l~~~~~---d~~---------------~~~~~~~~--~h~~~V~~v~fsp~g~~lla~-gs~dg~v~iwd  385 (1134)
                      .+.|+|+|.+|+....   |..               .......+  ...+.|.+++|+|+|+.++++ |..++.|.+||
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd   89 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD   89 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence            4678899988665533   111               11222233  345579999999999987544 56778999999


Q ss_pred             cCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeC---CCEEEEEEccCCceeeeeeeeecC
Q 001163          386 VGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS---KHIVHLYTYHGGDELRNHLEIEAH  462 (1134)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~---dg~v~iwd~~~~~~~~~~~~l~~h  462 (1134)
                      ++ ++.+..                     -+...++.+.|||+|++||+++.   .|.|.+||+++.+.+.   .. .|
T Consensus        90 ~~-~~~i~~---------------------~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~---~~-~~  143 (194)
T PF08662_consen   90 VK-GKKIFS---------------------FGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIS---TF-EH  143 (194)
T ss_pred             Cc-ccEeEe---------------------ecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEee---cc-cc
Confidence            96 333321                     13567889999999999999874   4679999999877654   22 24


Q ss_pred             CCCEEEEEEecCCCceEEEEEe------CCCeEEEEECCCCceeEEe
Q 001163          463 VGSVNDLAFSYPNKQLSVVTCG------EDRVIKVWDAVTGTKQYIF  503 (1134)
Q Consensus       463 ~~~V~~v~~s~~~~~~~l~s~s------~d~~i~iwd~~~~~~~~~~  503 (1134)
                      . .++.++|+|||+  +++++.      .|+.++||+. +|+.+...
T Consensus       144 ~-~~t~~~WsPdGr--~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~  186 (194)
T PF08662_consen  144 S-DATDVEWSPDGR--YLATATTSPRLRVDNGFKIWSF-QGRLLYKK  186 (194)
T ss_pred             C-cEEEEEEcCCCC--EEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence            3 478999999999  667665      3789999996 57776544

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.34  E-value=3.1e-09  Score=108.73  Aligned_cols=255  Identities=12%  Similarity=0.187  Sum_probs=173.8

Q ss_pred             CCCCeeEEEEcCCCCeEEEee-C---CeEEEEEccC--CeEE--EEecCCCCCeEEEEEcCCCCcEEEEEeC-CCcEEEE
Q 001163          842 PEDAVPCFALSKNDSYVMSAS-G---GKISLFNMMT--FKTM--TTFMPPPPAATFLAFHPQDNNIIAIGME-DSSIQIY  912 (1134)
Q Consensus       842 h~~~v~~v~~s~dg~~la~~s-d---g~i~lwd~~~--~~~~--~~~~~~~~~v~~l~~sp~~~~~la~g~~-dg~i~iw  912 (1134)
                      .....+-++++|+++.|.++. +   |.|..|.++.  |++.  ........+-+-+++++ ++++|+++.. -|.|.++
T Consensus        38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~  116 (346)
T COG2706          38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVY  116 (346)
T ss_pred             ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEE
Confidence            667788999999999888875 3   5677777654  5433  22222333448899999 8888888865 4799999


Q ss_pred             Eccc-ceEEE--eccCccCc----------eEEEEEeeCCCEEEEEe--CCCcEEEEECCCCccccceeeeecCCCCCCC
Q 001163          913 NVRV-DEVKT--KLKGHQKR----------ITGLAFSNTLNVLVSSG--ADSQLCVWSTDGWEKQASKFLTIPNGRTASA  977 (1134)
Q Consensus       913 d~~~-~~~~~--~l~~h~~~----------V~~l~~s~d~~~l~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  977 (1134)
                      .+.. |.+..  ....|.+.          +-...|.|++++|++.+  .|. |.+|+++.++........+..|     
T Consensus       117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr-i~~y~~~dg~L~~~~~~~v~~G-----  190 (346)
T COG2706         117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR-IFLYDLDDGKLTPADPAEVKPG-----  190 (346)
T ss_pred             EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce-EEEEEcccCccccccccccCCC-----
Confidence            9865 43321  12234444          77889999999999874  454 9999999877665444444332     


Q ss_pred             CCceEEEEcCCCCEEEEE--eeceEEEEeCCCc-ccceeec-----cCCC--ccCEEEEEEccCCCEEEEEec-CCcEEE
Q 001163          978 LADTRVQFHLDQTHLLAV--HETQIAIYEAPKL-ECLKQFV-----PREA--SGPITHATYSCDSQSIYVAFE-EGSVGV 1046 (1134)
Q Consensus       978 ~~v~~l~fs~dg~~l~~~--~d~~i~iwd~~~~-~~~~~~~-----~~~h--~~~v~~~~~s~dg~~l~s~s~-Dg~i~v 1046 (1134)
                      .+.+.+.|+|++++..+.  -+++|.+|..+.. ..+..+.     +...  ......|.+++||++|.++.. ...|.+
T Consensus       191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~  270 (346)
T COG2706         191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV  270 (346)
T ss_pred             CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence            567999999999998884  6799999998873 1111111     0111  456778999999999987764 357888


Q ss_pred             eecCCCcc-eeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCC-cEEEEeCCCCCCCccC
Q 001163         1047 LTASTLRL-RCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDG-GVYIIEPLEAEGRWGT 1110 (1134)
Q Consensus      1047 wd~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg-~v~vW~~~~~~~~~~~ 1110 (1134)
                      |.+....- +..+.   ..   .+....+-.+.++| ++++|+++..|+ +|.++.++...|+...
T Consensus       271 f~V~~~~g~L~~~~---~~---~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~  329 (346)
T COG2706         271 FSVDPDGGKLELVG---IT---PTEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTL  329 (346)
T ss_pred             EEEcCCCCEEEEEE---Ee---ccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence            88765422 22222   11   12334566678888 577777777654 7999999988876554

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.32  E-value=1.7e-10  Score=115.47  Aligned_cols=257  Identities=13%  Similarity=0.212  Sum_probs=173.2

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCc--eeeeeeeeecCC------------CCEEEEEEecCCCceEEEEE
Q 001163          418 TASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGD--ELRNHLEIEAHV------------GSVNDLAFSYPNKQLSVVTC  483 (1134)
Q Consensus       418 ~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~--~~~~~~~l~~h~------------~~V~~v~~s~~~~~~~l~s~  483 (1134)
                      .+-|.++.|..+|.+||+|..+|.|.++.-....  ...-...++.|.            ..|..+.|.+++..-.++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            4578999999999999999999999999654321  222233444454            45889999998876577788


Q ss_pred             eCCCeEEEEECCCCcee-----------------------------------EEe-cCCCcCEEEEeccccCCccEEEEe
Q 001163          484 GEDRVIKVWDAVTGTKQ-----------------------------------YIF-EGHESPVYSICPHHKENIQFIFST  527 (1134)
Q Consensus       484 s~d~~i~iwd~~~~~~~-----------------------------------~~~-~~h~~~v~~~~~~~~~~~~~l~s~  527 (1134)
                      ..|.+|++|.+......                                   +.+ .+|..-|++|.++  .|+..++++
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N--sD~Et~lSA  182 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN--SDKETFLSA  182 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec--CccceEeec
Confidence            89999999987532110                                   111 2577788888774  455667665


Q ss_pred             cCCCcEEEEecCCCCceee---ecCCC-----CCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeE----EEecC
Q 001163          528 ATDGKIKAWLYDNLGSRVD---YDAPG-----HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK----RTYHG  595 (1134)
Q Consensus       528 s~dg~i~vwd~~~~~~~~~---~~~~~-----~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~----~~~~~  595 (1134)
                       .|=.|.+|+++-...-..   +..+.     .-|++..|+|....++.-+.   ..+.|++-|++...+-    ..+..
T Consensus       183 -DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS---SKGtIrLcDmR~~aLCd~hsKlfEe  258 (433)
T KOG1354|consen  183 -DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS---SKGTIRLCDMRQSALCDAHSKLFEE  258 (433)
T ss_pred             -cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec---CCCcEEEeechhhhhhcchhhhhcc
Confidence             478899999875443332   22222     15778889996544433332   2446999999843221    11111


Q ss_pred             CCC-----------CceEEEEEcCCCCEEEEEeCCCeEEEEEc-CCCceeEEEecCCC----------CCCc---ceEEE
Q 001163          596 LGK-----------RSVGVVQFDTTKNRFLAAGDEFMIKFWDM-DNVNLLASIDADGG----------LQAS---PCIRF  650 (1134)
Q Consensus       596 ~~~-----------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~----------~~~v---~~v~~  650 (1134)
                      ..+           ..|..+.|+++|+++++-+. -+|++||+ ...+++.+++.|..          ...|   ..++|
T Consensus       259 pedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~  337 (433)
T KOG1354|consen  259 PEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSW  337 (433)
T ss_pred             ccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEE
Confidence            111           24677899999999988654 68999999 45667777665432          1122   36889


Q ss_pred             cCCCcEEEEEECCCcEEEEEccCCceeEEEe
Q 001163          651 NKEGILLAVSTNDNGIKILANADGIRLLRTV  681 (1134)
Q Consensus       651 sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  681 (1134)
                      +-++.++++|+....+++++...|.....++
T Consensus       338 sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl  368 (433)
T KOG1354|consen  338 SGNDSYVMTGSYNNVFRVFNLARGSKEDFTL  368 (433)
T ss_pred             cCCcceEecccccceEEEecCCCCcceeecc
Confidence            9999999999999999999987774444433

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=8.7e-10  Score=126.74  Aligned_cols=223  Identities=13%  Similarity=0.066  Sum_probs=141.5

Q ss_pred             cccCCCCEEEEEEcCCCCEEEEEeCC---CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCe--
Q 001163          414 SSDYTASVNRVMWSPDGTLFGVAYSK---HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV--  488 (1134)
Q Consensus       414 ~~~h~~~V~~l~~spd~~~las~s~d---g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~--  488 (1134)
                      +..+...+.+.+|||||+.|+..+.+   ..|.+||+.+++...    +....+.....+|+|||+. ++++.+.++.  
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~  287 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE  287 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence            34467789999999999999887543   268899998876422    2222333457899999995 3345566664  


Q ss_pred             EEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEec-CCCc--EEEEecCCCCceeeecCCCCCeeEEEECcCCCE
Q 001163          489 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA-TDGK--IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGAR  565 (1134)
Q Consensus       489 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  565 (1134)
                      |.+||+.+++.. .+..+.......+|++  ||+.|+..+ .++.  |.++|+.+++.. .+..........+|+|||++
T Consensus       288 Iy~~dl~tg~~~-~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~~~SpDG~~  363 (448)
T PRK04792        288 IYVVDIATKALT-RITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQNLGGSITPDGRS  363 (448)
T ss_pred             EEEEECCCCCeE-ECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCEE-EEecCCCCCcCeeECCCCCE
Confidence            788898877654 4444555556677755  446665443 4454  555566554432 22223333445789999999


Q ss_pred             EEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeC-CC--eEEEEEcCCCceeEEEecCCCC
Q 001163          566 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGD-EF--MIKFWDMDNVNLLASIDADGGL  642 (1134)
Q Consensus       566 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~  642 (1134)
                      ++..+.. .+...|.++|+.+++........   ......|+|+|+.|+..+. +|  .+++++. +|.....+...  .
T Consensus       364 l~~~~~~-~g~~~I~~~dl~~g~~~~lt~~~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~--~  436 (448)
T PRK04792        364 MIMVNRT-NGKFNIARQDLETGAMQVLTSTR---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAG--Q  436 (448)
T ss_pred             EEEEEec-CCceEEEEEECCCCCeEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCC--C
Confidence            9887654 33456888999888654322221   1223579999998887663 33  3777787 45555656543  3


Q ss_pred             CCcceEEEcC
Q 001163          643 QASPCIRFNK  652 (1134)
Q Consensus       643 ~~v~~v~~sp  652 (1134)
                      ..+...+|+|
T Consensus       437 g~~~~p~Wsp  446 (448)
T PRK04792        437 GEVKSPAWSP  446 (448)
T ss_pred             CCcCCCccCC
Confidence            3566778876

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=2.6e-09  Score=113.90  Aligned_cols=357  Identities=10%  Similarity=0.145  Sum_probs=207.3

Q ss_pred             EEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCE
Q 001163          533 IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNR  612 (1134)
Q Consensus       533 i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  612 (1134)
                      ...|+..............=.-+-+.|||.|.+|++-...|     |.+|--.+...++.|...   .+.-+.|||..+|
T Consensus       192 svfwN~~~n~p~~ie~RenWTetyv~wSP~GTYL~t~Hk~G-----I~lWGG~~f~r~~RF~Hp---~Vq~idfSP~EkY  263 (698)
T KOG2314|consen  192 SVFWNSKFNEPSLIEERENWTETYVRWSPKGTYLVTFHKQG-----IALWGGESFDRIQRFYHP---GVQFIDFSPNEKY  263 (698)
T ss_pred             EEEccccCCchhhhhhhhcceeeeEEecCCceEEEEEeccc-----eeeecCccHHHHHhccCC---CceeeecCCccce
Confidence            44676544322222111122446789999999999987544     999987776666666532   5778999999999


Q ss_pred             EEEEeC-----------CCeEEEEEcCCCceeEEEecCCC-CCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEE
Q 001163          613 FLAAGD-----------EFMIKFWDMDNVNLLASIDADGG-LQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRT  680 (1134)
Q Consensus       613 l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~  680 (1134)
                      |++-+.           ...++|||+.+|.....+..... ...-.-..||.|++++|.... ..|.||+...-    ..
T Consensus       264 LVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf----~l  338 (698)
T KOG2314|consen  264 LVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSF----ML  338 (698)
T ss_pred             EEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCce----ee
Confidence            998652           25799999999998888765322 223346789999999998776 47888875432    11


Q ss_pred             eccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccC
Q 001163          681 VESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEIT  760 (1134)
Q Consensus       681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~  760 (1134)
                      +...+                                                                           
T Consensus       339 ld~Ks---------------------------------------------------------------------------  343 (698)
T KOG2314|consen  339 LDKKS---------------------------------------------------------------------------  343 (698)
T ss_pred             ecccc---------------------------------------------------------------------------
Confidence            11100                                                                           


Q ss_pred             CccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCC
Q 001163          761 EPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDT  840 (1134)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  840 (1134)
                             +      .-..|..+.|+|.+..|+.-..                               ++..         
T Consensus       344 -------l------ki~gIr~FswsP~~~llAYwtp-------------------------------e~~~---------  370 (698)
T KOG2314|consen  344 -------L------KISGIRDFSWSPTSNLLAYWTP-------------------------------ETNN---------  370 (698)
T ss_pred             -------c------CCccccCcccCCCcceEEEEcc-------------------------------cccC---------
Confidence                   0      1234566777887654442211                               1100         


Q ss_pred             CCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCC-CCcEEEEEeCCCcEEEEEcccceE
Q 001163          841 NPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQ-DNNIIAIGMEDSSIQIYNVRVDEV  919 (1134)
Q Consensus       841 ~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~-~~~~la~g~~dg~i~iwd~~~~~~  919 (1134)
                       ....++-+. -|.++.|     .+..++++.++++...-   .+.-.|+..... .++   +++.--.+.|+.+.....
T Consensus       371 -~parvtL~e-vPs~~~i-----Rt~nlfnVsDckLhWQk---~gdyLcvkvdR~tK~~---~~g~f~n~eIfrireKdI  437 (698)
T KOG2314|consen  371 -IPARVTLME-VPSKREI-----RTKNLFNVSDCKLHWQK---SGDYLCVKVDRHTKSK---VKGQFSNLEIFRIREKDI  437 (698)
T ss_pred             -CcceEEEEe-cCcccee-----eeccceeeeccEEEecc---CCcEEEEEEEeecccc---ccceEeeEEEEEeeccCC
Confidence             011111111 1333322     12234444443333221   222223222210 000   122222466776665443


Q ss_pred             EEeccCccCceEEEEEeeCCCEEEEEeC---CCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-
Q 001163          920 KTKLKGHQKRITGLAFSNTLNVLVSSGA---DSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-  995 (1134)
Q Consensus       920 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-  995 (1134)
                      .-....-...|...+|-|.|..+++-+.   ..++.+|.+++.... ...+.....     ...+.+.|||.|++++++ 
T Consensus       438 pve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~-~~lVk~~dk-----~~~N~vfwsPkG~fvvva~  511 (698)
T KOG2314|consen  438 PVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKK-PSLVKELDK-----KFANTVFWSPKGRFVVVAA  511 (698)
T ss_pred             CceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCc-hhhhhhhcc-----cccceEEEcCCCcEEEEEE
Confidence            2222224567889999999988877554   357899988852211 222222222     236889999999999883 


Q ss_pred             ---eeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEec------CCcEEEeecCC
Q 001163          996 ---HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFE------EGSVGVLTAST 1051 (1134)
Q Consensus       996 ---~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~------Dg~i~vwd~~~ 1051 (1134)
                         ..|.+.+||.....+...-.+ . ....+.+.|.|.|+|++|++.      |.-.++|+.+.
T Consensus       512 l~s~~g~l~F~D~~~a~~k~~~~~-e-h~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG  574 (698)
T KOG2314|consen  512 LVSRRGDLEFYDTDYADLKDTASP-E-HFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG  574 (698)
T ss_pred             ecccccceEEEecchhhhhhccCc-c-ccccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence               578999999985333322221 2 345678899999999999885      44567777764

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.31  E-value=2.5e-08  Score=111.09  Aligned_cols=246  Identities=13%  Similarity=0.181  Sum_probs=160.6

Q ss_pred             CCCEEEEEEcCCCCEEEEEeC----CCEEEEEEccCC-ceeeeeeeeecCCCCEEEEEEecCCCceEEEEEe-CCCeEEE
Q 001163          418 TASVNRVMWSPDGTLFGVAYS----KHIVHLYTYHGG-DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-EDRVIKV  491 (1134)
Q Consensus       418 ~~~V~~l~~spd~~~las~s~----dg~v~iwd~~~~-~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s-~d~~i~i  491 (1134)
                      ......++++|++++|.+...    ++.|..|++... ..+...............++++|+++  +|+++. .+|+|.+
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~--~l~vany~~g~v~v  113 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGR--FLYVANYGGGSVSV  113 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSS--EEEEEETTTTEEEE
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCC--EEEEEEccCCeEEE
Confidence            346677999999999999876    579999998875 33443334443445667899999999  455554 5899999


Q ss_pred             EECCC-CceeEE---ec----------CCCcCEEEEeccccCCccEEEEec-CCCcEEEEecCCCCcee----ee-cCCC
Q 001163          492 WDAVT-GTKQYI---FE----------GHESPVYSICPHHKENIQFIFSTA-TDGKIKAWLYDNLGSRV----DY-DAPG  551 (1134)
Q Consensus       492 wd~~~-~~~~~~---~~----------~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~----~~-~~~~  551 (1134)
                      +++.. |.....   +.          .......++.++|  +++++++.. ....|.+|+++......    .+ ...+
T Consensus       114 ~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p--dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G  191 (345)
T PF10282_consen  114 FPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP--DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG  191 (345)
T ss_dssp             EEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T--TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT
T ss_pred             EEccCCcccceeeeecccCCCCCcccccccccceeEEECC--CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC
Confidence            99987 443322   21          1234466777754  456666543 34579999998765222    12 2344


Q ss_pred             CCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC--CCe--eEEEecCC----CC-CceEEEEEcCCCCEEEEEe-CCCe
Q 001163          552 HSSTMMAYSADGARLFSCGTNKEGESYLVEWNES--EGA--VKRTYHGL----GK-RSVGVVQFDTTKNRFLAAG-DEFM  621 (1134)
Q Consensus       552 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~--~~~~~~~~----~~-~~v~~~~~~~~~~~l~~~~-~dg~  621 (1134)
                      ..-+.++|+|+++++++....   ...|.++++.  ++.  .+......    .. .....+.++||+++|+++. .++.
T Consensus       192 ~GPRh~~f~pdg~~~Yv~~e~---s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~s  268 (345)
T PF10282_consen  192 SGPRHLAFSPDGKYAYVVNEL---SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNS  268 (345)
T ss_dssp             SSEEEEEE-TTSSEEEEEETT---TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTE
T ss_pred             CCCcEEEEcCCcCEEEEecCC---CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCE
Confidence            577899999999999887642   4457777766  443  23333221    11 1467899999999988877 6788


Q ss_pred             EEEEEcC--CCce--eEEEecCCCCCCcceEEEcCCCcEEEEEE-CCCcEEEEEcc
Q 001163          622 IKFWDMD--NVNL--LASIDADGGLQASPCIRFNKEGILLAVST-NDNGIKILANA  672 (1134)
Q Consensus       622 i~iwd~~--~~~~--~~~~~~~~~~~~v~~v~~sp~~~~l~~~~-~dg~i~iw~~~  672 (1134)
                      |.+|+++  ++++  +..+...  ......++++|+|++|+++. .++.|.+|++.
T Consensus       269 I~vf~~d~~~g~l~~~~~~~~~--G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  269 ISVFDLDPATGTLTLVQTVPTG--GKFPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             EEEEEECTTTTTEEEEEEEEES--SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEEEEEecCCCceEEEEEEeCC--CCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence            9999984  3333  3333332  22468999999999998887 46799999875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.31  E-value=2.2e-10  Score=117.20  Aligned_cols=245  Identities=10%  Similarity=0.126  Sum_probs=179.9

Q ss_pred             CCCCEEEEEEcCCCC--EEEEEeCCCEEEEEEccCCceeeee---eeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEE
Q 001163          417 YTASVNRVMWSPDGT--LFGVAYSKHIVHLYTYHGGDELRNH---LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV  491 (1134)
Q Consensus       417 h~~~V~~l~~spd~~--~las~s~dg~v~iwd~~~~~~~~~~---~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i  491 (1134)
                      ....|..++|.-|++  .+...+.|..+..+++.........   .......++|..++.. ||   .|++|-.+|.+.+
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg---~Litc~~sG~l~~  129 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG---TLITCVSSGNLQV  129 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC---EEEEEecCCcEEE
Confidence            456788888887654  4555556777777777665543321   1233456677777765 44   5899999999999


Q ss_pred             EECCCCc----eeEEecCCCcCEEEEeccccCCccEEEEecCC--CcEEEEecCCCCceeeecCCC---------CCeeE
Q 001163          492 WDAVTGT----KQYIFEGHESPVYSICPHHKENIQFIFSTATD--GKIKAWLYDNLGSRVDYDAPG---------HSSTM  556 (1134)
Q Consensus       492 wd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d--g~i~vwd~~~~~~~~~~~~~~---------~~v~~  556 (1134)
                      |..+.+.    .+..+..+ .++..+.-++.. -.++++|+..  ..+.+||+...+.++.-....         -.+++
T Consensus       130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~-p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td  207 (412)
T KOG3881|consen  130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTDTD-PYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD  207 (412)
T ss_pred             EeccCCccccccceeeecC-CceeeeccCCCC-CceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence            9987443    23333333 345555443322 2577779998  889999998775444322111         14678


Q ss_pred             EEECcC--CCEEEEEecCCCCCeEEEEEeCCCC-eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcee
Q 001163          557 MAYSAD--GARLFSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL  633 (1134)
Q Consensus       557 ~~~s~~--~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  633 (1134)
                      +.|-+.  ...+++++.    -+.+++||.+.+ +++..|..... ++.++...|+++++++|..-|.+..+|.+.++..
T Consensus       208 i~Fl~g~~~~~fat~T~----~hqvR~YDt~~qRRPV~~fd~~E~-~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~  282 (412)
T KOG3881|consen  208 IRFLEGSPNYKFATITR----YHQVRLYDTRHQRRPVAQFDFLEN-PISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL  282 (412)
T ss_pred             ceecCCCCCceEEEEec----ceeEEEecCcccCcceeEeccccC-cceeeeecCCCcEEEEecccchhheecccCceee
Confidence            888887  788998864    557999999876 56777776665 8999999999999999999999999999999988


Q ss_pred             EE-EecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163          634 AS-IDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       634 ~~-~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      .. +.  +..+.+.++..+|.++++++++-|+.+||+|+.+.
T Consensus       283 g~~~k--g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  283 GCGLK--GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             ccccC--CccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence            77 55  34678999999999999999999999999999885

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=1.4e-09  Score=125.99  Aligned_cols=222  Identities=13%  Similarity=0.080  Sum_probs=142.1

Q ss_pred             ccCCCCEEEEEEcCCCCEEEEEeCC---CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCC--eE
Q 001163          415 SDYTASVNRVMWSPDGTLFGVAYSK---HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--VI  489 (1134)
Q Consensus       415 ~~h~~~V~~l~~spd~~~las~s~d---g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~--~i  489 (1134)
                      ..+...+...+|||||+.|+..+.+   ..|.+||+.+++...    +....+.+...+|+|||+. ++++.+.++  .|
T Consensus       195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~I  269 (430)
T PRK00178        195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPEI  269 (430)
T ss_pred             ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCceE
Confidence            4567789999999999999887644   369999999886432    3333445567899999995 333555555  68


Q ss_pred             EEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEec-CCC--cEEEEecCCCCceeeecCCCCCeeEEEECcCCCEE
Q 001163          490 KVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA-TDG--KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARL  566 (1134)
Q Consensus       490 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  566 (1134)
                      .+||+.+++.. .+..+........|++  ||+.|+..+ .++  .|.++++..++... +...........|+|||+.+
T Consensus       270 y~~d~~~~~~~-~lt~~~~~~~~~~~sp--Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i  345 (430)
T PRK00178        270 YVMDLASRQLS-RVTNHPAIDTEPFWGK--DGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTL  345 (430)
T ss_pred             EEEECCCCCeE-EcccCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence            88899887654 3544555555566654  456555444 444  46666766554322 22222334467899999999


Q ss_pred             EEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCceeEEEecCCCCC
Q 001163          567 FSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE---FMIKFWDMDNVNLLASIDADGGLQ  643 (1134)
Q Consensus       567 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~  643 (1134)
                      +...... +...|.+||+.+++........   ......|+|+|+.++..+.+   ..|++++... .....+...  ..
T Consensus       346 ~~~~~~~-~~~~l~~~dl~tg~~~~lt~~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~--~g  418 (430)
T PRK00178        346 VMVHRQD-GNFHVAAQDLQRGSVRILTDTS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTA--QG  418 (430)
T ss_pred             EEEEccC-CceEEEEEECCCCCEEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCC--CC
Confidence            8876532 3556999999988654332221   12245899999998877643   3577777754 333344332  23


Q ss_pred             CcceEEEcC
Q 001163          644 ASPCIRFNK  652 (1134)
Q Consensus       644 ~v~~v~~sp  652 (1134)
                      .+...+|+|
T Consensus       419 ~~~~p~ws~  427 (430)
T PRK00178        419 EVREPSWSP  427 (430)
T ss_pred             CcCCCccCC
Confidence            456667776

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=1.9e-09  Score=122.73  Aligned_cols=227  Identities=13%  Similarity=0.089  Sum_probs=140.4

Q ss_pred             ccCCCCEEEEEEcCCCCEEE---EEeCC--CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeC----
Q 001163          415 SDYTASVNRVMWSPDGTLFG---VAYSK--HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE----  485 (1134)
Q Consensus       415 ~~h~~~V~~l~~spd~~~la---s~s~d--g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~----  485 (1134)
                      ......+..-+|||||+.++   +...+  ..|.+.++.+++..+    +....+.....+|||||+.+ +++...    
T Consensus       181 t~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~L-af~s~~~g~~  255 (428)
T PRK01029        181 TQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKLL-AFISDRYGNP  255 (428)
T ss_pred             ccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCEE-EEEECCCCCc
Confidence            34555677889999998532   34333  357888998876432    33344455678999999952 333322    


Q ss_pred             CCeEEEEECCCC---ceeEEecCCCcCEEEEeccccCCccEEEEec-CCCcEEEEecC--CC-CceeeecCCCCCeeEEE
Q 001163          486 DRVIKVWDAVTG---TKQYIFEGHESPVYSICPHHKENIQFIFSTA-TDGKIKAWLYD--NL-GSRVDYDAPGHSSTMMA  558 (1134)
Q Consensus       486 d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~vwd~~--~~-~~~~~~~~~~~~v~~~~  558 (1134)
                      |-.+.+|++.++   +......++.+.....+|+  +||+.|+..+ .+|...+|.+.  .. .....+......+....
T Consensus       256 di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS--PDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~  333 (428)
T PRK01029        256 DLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS--PDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPA  333 (428)
T ss_pred             ceeEEEeecccCCCCcceEeecCCCCCcCCeEEC--CCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCcccee
Confidence            334455777653   3333333332333455664  5557666544 56766666543  22 22333444445667889


Q ss_pred             ECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeC---CCeEEEEEcCCCceeEE
Q 001163          559 YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGD---EFMIKFWDMDNVNLLAS  635 (1134)
Q Consensus       559 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~  635 (1134)
                      |+|||+.|+..+.. .+...|.+||+.+++....... . ..+....|+|||+.|+....   ...|++||+.+++....
T Consensus       334 wSPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~-~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L  410 (428)
T PRK01029        334 WSPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-P-ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI  410 (428)
T ss_pred             ECCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-C-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence            99999999887654 2456799999998876544333 2 24567899999998876542   45789999988776544


Q ss_pred             EecCCCCCCcceEEEcCCC
Q 001163          636 IDADGGLQASPCIRFNKEG  654 (1134)
Q Consensus       636 ~~~~~~~~~v~~v~~sp~~  654 (1134)
                      ...   ...+...+|+|-.
T Consensus       411 t~~---~g~~~~p~Ws~~~  426 (428)
T PRK01029        411 VIG---SGEKRFPSWGAFP  426 (428)
T ss_pred             ecC---CCcccCceecCCC
Confidence            432   2345677888743

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.28  E-value=1.4e-09  Score=125.99  Aligned_cols=210  Identities=15%  Similarity=0.082  Sum_probs=138.7

Q ss_pred             cccCCCCEEEEEEcCCCCEEEEEeCC---CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCC--e
Q 001163          414 SSDYTASVNRVMWSPDGTLFGVAYSK---HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--V  488 (1134)
Q Consensus       414 ~~~h~~~V~~l~~spd~~~las~s~d---g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~--~  488 (1134)
                      +..+...+...+|||||++||.++.+   ..|++||+.+++...    +..+.+.+.+++|+|||+. ++++.+.++  .
T Consensus       185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~  259 (417)
T TIGR02800       185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD  259 (417)
T ss_pred             eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence            34566789999999999999987654   479999999876432    4446666778999999985 344555444  6


Q ss_pred             EEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecC-CC--cEEEEecCCCCceeeecCCCCCeeEEEECcCCCE
Q 001163          489 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT-DG--KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGAR  565 (1134)
Q Consensus       489 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  565 (1134)
                      |.+||+.++... .+..+........|++  +|+.|+..+. ++  .|.++|+...+. ..+...........|+|+|++
T Consensus       260 i~~~d~~~~~~~-~l~~~~~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~  335 (417)
T TIGR02800       260 IYVMDLDGKQLT-RLTNGPGIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDL  335 (417)
T ss_pred             EEEEECCCCCEE-ECCCCCCCCCCEEECC--CCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCE
Confidence            889998877643 3444444444556654  5566665543 34  477777765443 333334556678899999999


Q ss_pred             EEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCC---eEEEEEcCCCceeEEEe
Q 001163          566 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF---MIKFWDMDNVNLLASID  637 (1134)
Q Consensus       566 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~  637 (1134)
                      ++....+. +...|.+||+.++....... ..  ......|+|+++.|+..+.++   .+++.+.. +.....+.
T Consensus       336 i~~~~~~~-~~~~i~~~d~~~~~~~~l~~-~~--~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~  405 (417)
T TIGR02800       336 IAFVHREG-GGFNIAVMDLDGGGERVLTD-TG--LDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLP  405 (417)
T ss_pred             EEEEEccC-CceEEEEEeCCCCCeEEccC-CC--CCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECC
Confidence            99887543 35579999998865433222 21  234468999999988877543   35555543 44444443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.26  E-value=7.8e-10  Score=127.15  Aligned_cols=223  Identities=14%  Similarity=0.145  Sum_probs=138.8

Q ss_pred             EeecCCCeeEEEEcCCCCeEEEEEeCCC--cEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCC
Q 001163          352 TLNQGSAVKSMDFHPVQQILLVVGTNMG--DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD  429 (1134)
Q Consensus       352 ~~~h~~~V~~v~fsp~g~~lla~gs~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd  429 (1134)
                      ...+...+.+..|||||++++.+...++  .|.+||+.+++....                    ....+.....+||||
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l--------------------t~~~g~~~~~~wSPD  272 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV--------------------TSFPGINGAPRFSPD  272 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe--------------------cCCCCCcCCeeECCC
Confidence            3456778899999999998766654444  588899988764321                    111223446899999


Q ss_pred             CCEEEE-EeCCCE--EEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCC--eEEEEECCCCceeEE-e
Q 001163          430 GTLFGV-AYSKHI--VHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--VIKVWDAVTGTKQYI-F  503 (1134)
Q Consensus       430 ~~~las-~s~dg~--v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~--~i~iwd~~~~~~~~~-~  503 (1134)
                      |+.|+. .+.+|.  |.+||+.+++..    .+..+.......+|+|||+. ++++...++  .|.++|+.+++.... +
T Consensus       273 G~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~  347 (448)
T PRK04792        273 GKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVSRLTF  347 (448)
T ss_pred             CCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEEEEec
Confidence            998875 455664  778888877632    24456566778999999995 233333343  577778877765432 2


Q ss_pred             cCCCcCEEEEeccccCCccEEEEecC-CCc--EEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEE
Q 001163          504 EGHESPVYSICPHHKENIQFIFSTAT-DGK--IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLV  580 (1134)
Q Consensus       504 ~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~  580 (1134)
                      .++.  ....+|+  +||++|+..+. ++.  |.++|+.++.... +... .......|+|||+.++..... .+...++
T Consensus       348 ~g~~--~~~~~~S--pDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~-~g~~~l~  420 (448)
T PRK04792        348 EGEQ--NLGGSIT--PDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTY-QGKQVLA  420 (448)
T ss_pred             CCCC--CcCeeEC--CCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEec-CCceEEE
Confidence            3222  2334564  45566655543 444  4445666544332 2221 222345899999999887654 3456688


Q ss_pred             EEeCCCCeeEEEecCCCCCceEEEEEcC
Q 001163          581 EWNESEGAVKRTYHGLGKRSVGVVQFDT  608 (1134)
Q Consensus       581 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~  608 (1134)
                      +++. +|.....+..... .+...+|+|
T Consensus       421 ~~~~-~G~~~~~l~~~~g-~~~~p~Wsp  446 (448)
T PRK04792        421 AVSI-DGRFKARLPAGQG-EVKSPAWSP  446 (448)
T ss_pred             EEEC-CCCceEECcCCCC-CcCCCccCC
Confidence            8887 4656665654433 456667776

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.26  E-value=2.9e-10  Score=114.03  Aligned_cols=211  Identities=16%  Similarity=0.270  Sum_probs=137.2

Q ss_pred             eeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECC-CCceeEEec-CCCcCEEEEeccccCCccEEEEecCCCcEEE
Q 001163          458 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV-TGTKQYIFE-GHESPVYSICPHHKENIQFIFSTATDGKIKA  535 (1134)
Q Consensus       458 ~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~v  535 (1134)
                      .++||.+.|+....-|...  -+++.+.|.+++||--+ .++.-..+. ....+++++.+..  +...|+.|-.+|++.-
T Consensus        19 ~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~--e~~~L~vg~~ngtvte   94 (404)
T KOG1409|consen   19 KIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS--ESRRLYVGQDNGTVTE   94 (404)
T ss_pred             hhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec--cceEEEEEEecceEEE
Confidence            5789999999888887766  58999999999999633 333222222 1245566666644  4478999999999988


Q ss_pred             EecCC----CCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEe-CCCCeeEEEecCCCCCceEEEEEcCCC
Q 001163          536 WLYDN----LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWN-ESEGAVKRTYHGLGKRSVGVVQFDTTK  610 (1134)
Q Consensus       536 wd~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd-~~~~~~~~~~~~~~~~~v~~~~~~~~~  610 (1134)
                      +.+..    .........|...+..+.|+-..+++++.+.|+.    + .|- .+.+..+..+....  ....+.+.-  
T Consensus        95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~----~-~~hc~e~~~~lg~Y~~~~--~~t~~~~d~--  165 (404)
T KOG1409|consen   95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQ----F-AWHCTESGNRLGGYNFET--PASALQFDA--  165 (404)
T ss_pred             EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccc----e-EEEeeccCCcccceEeec--cCCCCceee--
Confidence            86543    3344445667778999999999999999887642    2 332 22333222211111  001111111  


Q ss_pred             CEEEEEeCCCeEEEEEcCC--CceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEecc
Q 001163          611 NRFLAAGDEFMIKFWDMDN--VNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVES  683 (1134)
Q Consensus       611 ~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~  683 (1134)
                      .+.+.|...|.|.+-.+..  -.++..+.  ++...+.+++|.+....|.+|..|..+.+||+.........+.+
T Consensus       166 ~~~fvGd~~gqvt~lr~~~~~~~~i~~~~--~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g  238 (404)
T KOG1409|consen  166 LYAFVGDHSGQITMLKLEQNGCQLITTFN--GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG  238 (404)
T ss_pred             EEEEecccccceEEEEEeecCCceEEEEc--CcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc
Confidence            1455566667776665543  34555555  45789999999999999999999999999998765444444433

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.25  E-value=1.3e-09  Score=124.16  Aligned_cols=225  Identities=11%  Similarity=0.081  Sum_probs=139.5

Q ss_pred             cCCCeeEEEEcCCCCeE--EEEEeCCC--cEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCC
Q 001163          355 QGSAVKSMDFHPVQQIL--LVVGTNMG--DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG  430 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~l--la~gs~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~  430 (1134)
                      ....+.+-+|||||+.+  +++...+|  .|.+.++.+|+...                    +....+.....+|||||
T Consensus       183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~~~p~wSPDG  242 (428)
T PRK01029        183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQLMPTFSPRK  242 (428)
T ss_pred             CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCccceEECCCC
Confidence            45567788999999863  33444443  58888888876443                    22234455678999999


Q ss_pred             CEEEEEeC-----CCEEEEEEccCCc--eeeeeeeeecCCCCEEEEEEecCCCceEEEEE-eCCCeEEEE--ECCC-Cce
Q 001163          431 TLFGVAYS-----KHIVHLYTYHGGD--ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTC-GEDRVIKVW--DAVT-GTK  499 (1134)
Q Consensus       431 ~~las~s~-----dg~v~iwd~~~~~--~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~-s~d~~i~iw--d~~~-~~~  499 (1134)
                      +.||..+.     +..+.+|++.++.  ..+.  ...++.+.....+|+|||+.  |+.. ..++...+|  ++.. +..
T Consensus       243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~--lt~~~~~~~~~p~wSPDG~~--Laf~s~~~g~~~ly~~~~~~~g~~  318 (428)
T PRK01029        243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRR--LLNEAFGTQGNPSFSPDGTR--LVFVSNKDGRPRIYIMQIDPEGQS  318 (428)
T ss_pred             CEEEEEECCCCCcceeEEEeecccCCCCcceE--eecCCCCCcCCeEECCCCCE--EEEEECCCCCceEEEEECcccccc
Confidence            99987653     2235557776532  1221  12223344567899999995  4443 356655555  4432 333


Q ss_pred             eEEecCCCcCEEEEeccccCCccEEEEecCC---CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCC
Q 001163          500 QYIFEGHESPVYSICPHHKENIQFIFSTATD---GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGE  576 (1134)
Q Consensus       500 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~  576 (1134)
                      ...+..+...+....|+|  ||+.|+..+.+   ..|.+||+.+++.... ......+....|+|||+.|+..... .+.
T Consensus       319 ~~~lt~~~~~~~~p~wSP--DG~~Laf~~~~~g~~~I~v~dl~~g~~~~L-t~~~~~~~~p~wSpDG~~L~f~~~~-~g~  394 (428)
T PRK01029        319 PRLLTKKYRNSSCPAWSP--DGKKIAFCSVIKGVRQICVYDLATGRDYQL-TTSPENKESPSWAIDSLHLVYSAGN-SNE  394 (428)
T ss_pred             eEEeccCCCCccceeECC--CCCEEEEEEcCCCCcEEEEEECCCCCeEEc-cCCCCCccceEECCCCCEEEEEECC-CCC
Confidence            444544545566677755  45767655432   3689999987655433 2223456788999999998876543 345


Q ss_pred             eEEEEEeCCCCeeEEEecCCCCCceEEEEEcCC
Q 001163          577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTT  609 (1134)
Q Consensus       577 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~  609 (1134)
                      ..|+++|+..++........  ..+...+|+|-
T Consensus       395 ~~L~~vdl~~g~~~~Lt~~~--g~~~~p~Ws~~  425 (428)
T PRK01029        395 SELYLISLITKKTRKIVIGS--GEKRFPSWGAF  425 (428)
T ss_pred             ceEEEEECCCCCEEEeecCC--CcccCceecCC
Confidence            67999999888765544322  24556677764

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.24  E-value=9.4e-10  Score=119.07  Aligned_cols=188  Identities=17%  Similarity=0.282  Sum_probs=150.0

Q ss_pred             CCCCeEEEee-CCeEEEEEccCCeEEEEecCC---CCCeEEEEEc------C-------------CCCcEEEEEeCCCcE
Q 001163          853 KNDSYVMSAS-GGKISLFNMMTFKTMTTFMPP---PPAATFLAFH------P-------------QDNNIIAIGMEDSSI  909 (1134)
Q Consensus       853 ~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~---~~~v~~l~~s------p-------------~~~~~la~g~~dg~i  909 (1134)
                      |-+.++|... ||.+++||..+++....+...   .+..++..|.      |             .|...+|-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4456778776 899999999999888887632   2344444442      2             144578899999999


Q ss_pred             EEEEcccceEEEecc--CccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcC
Q 001163          910 QIYNVRVDEVKTKLK--GHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHL  987 (1134)
Q Consensus       910 ~iwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~  987 (1134)
                      .+|++..|+....+.  .|.+.|.++.++.+-..+.|++.|+.+..|+.....     .+.......   ..+.+++.+|
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-----~~~~~~~~~---~~~~sl~is~  154 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-----IIRIWKEQK---PLVSSLCISP  154 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-----eeeeeccCC---CccceEEEcC
Confidence            999999999888776  599999999999999999999999999999998854     333333333   3588999999


Q ss_pred             CCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccC-----CCEEEE-EecCCcEEEeecCC
Q 001163          988 DQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCD-----SQSIYV-AFEEGSVGVLTAST 1051 (1134)
Q Consensus       988 dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~d-----g~~l~s-~s~Dg~i~vwd~~~ 1051 (1134)
                      ||+.|+++ .++|.+||+++++.+..|.  +|.++|+++.|..+     |.++++ ...+..+.+|-+..
T Consensus       155 D~~~l~~a-s~~ik~~~~~~kevv~~ft--gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  155 DGKILLTA-SRQIKVLDIETKEVVITFT--GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             CCCEEEec-cceEEEEEccCceEEEEec--CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            99988874 5789999999999999998  99999999999988     777654 44456688887765

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.24  E-value=1.8e-09  Score=125.18  Aligned_cols=227  Identities=11%  Similarity=0.086  Sum_probs=142.6

Q ss_pred             eEEEeecCCCeeEEEEcCCCCeEEEEEeCC--CcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEE
Q 001163          349 VVMTLNQGSAVKSMDFHPVQQILLVVGTNM--GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW  426 (1134)
Q Consensus       349 ~~~~~~h~~~V~~v~fsp~g~~lla~gs~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  426 (1134)
                      ......+...+...+|||||++|+++...+  ..|.+||+.+++...                    +....+.+...+|
T Consensus       191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~~~~  250 (430)
T PRK00178        191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGAPAW  250 (430)
T ss_pred             ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCCeEE
Confidence            344456778899999999999876665443  369999998886432                    1223344567899


Q ss_pred             cCCCCEEEE-EeCCC--EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCC--eEEEEECCCCceeE
Q 001163          427 SPDGTLFGV-AYSKH--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--VIKVWDAVTGTKQY  501 (1134)
Q Consensus       427 spd~~~las-~s~dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~--~i~iwd~~~~~~~~  501 (1134)
                      ||||+.|+. .+.+|  .|.+||+.+++..    .+..+........|+|||+. ++++...++  .|.++|+.+++...
T Consensus       251 SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~~d~~~g~~~~  325 (430)
T PRK00178        251 SPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYKVNVNGGRAER  325 (430)
T ss_pred             CCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECCCCCEEE
Confidence            999998875 44444  6888899887633    24456666777899999995 233333333  67888888877543


Q ss_pred             EecCCCcCEEEEeccccCCccEEEEecC-CC--cEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeE
Q 001163          502 IFEGHESPVYSICPHHKENIQFIFSTAT-DG--KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESY  578 (1134)
Q Consensus       502 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~  578 (1134)
                      ... .........|+  ++|+.|+..+. ++  .|.+||+.++..... .. ........|+|||+.++..+.. .+...
T Consensus       326 lt~-~~~~~~~~~~S--pdg~~i~~~~~~~~~~~l~~~dl~tg~~~~l-t~-~~~~~~p~~spdg~~i~~~~~~-~g~~~  399 (430)
T PRK00178        326 VTF-VGNYNARPRLS--ADGKTLVMVHRQDGNFHVAAQDLQRGSVRIL-TD-TSLDESPSVAPNGTMLIYATRQ-QGRGV  399 (430)
T ss_pred             eec-CCCCccceEEC--CCCCEEEEEEccCCceEEEEEECCCCCEEEc-cC-CCCCCCceECCCCCEEEEEEec-CCceE
Confidence            221 11222334554  45566765553 33  477888876554332 22 2223356899999999887654 34566


Q ss_pred             EEEEeCCCCeeEEEecCCCCCceEEEEEcC
Q 001163          579 LVEWNESEGAVKRTYHGLGKRSVGVVQFDT  608 (1134)
Q Consensus       579 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~  608 (1134)
                      +.+++... .....+..... .+...+|+|
T Consensus       400 l~~~~~~g-~~~~~l~~~~g-~~~~p~ws~  427 (430)
T PRK00178        400 LMLVSING-RVRLPLPTAQG-EVREPSWSP  427 (430)
T ss_pred             EEEEECCC-CceEECcCCCC-CcCCCccCC
Confidence            88888754 33344443322 455566665

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.24  E-value=1.4e-09  Score=117.86  Aligned_cols=194  Identities=15%  Similarity=0.166  Sum_probs=155.6

Q ss_pred             cCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEe------c------------CCCceEEEEEeCCCe
Q 001163          427 SPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFS------Y------------PNKQLSVVTCGEDRV  488 (1134)
Q Consensus       427 spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s------~------------~~~~~~l~s~s~d~~  488 (1134)
                      .|-..|+|....||.++|||...++....+.....-++.-++..|.      |            .+....++-|...|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            3457799999999999999999988655443333334455555552      1            122237888999999


Q ss_pred             EEEEECCCCceeEEec--CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEE
Q 001163          489 IKVWDAVTGTKQYIFE--GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARL  566 (1134)
Q Consensus       489 i~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  566 (1134)
                      |.++++..|+....+.  .|.+.|.++.++..-  ..|.+++.|+.+..|+................+.+++++|||+.+
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~--~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l  159 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL--GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL  159 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeeccccc--CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence            9999999999988875  599999999875443  689999999999999999888888888888899999999999999


Q ss_pred             EEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCC-----CCEEEEEe-CCCeEEEEEcCC
Q 001163          567 FSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTT-----KNRFLAAG-DEFMIKFWDMDN  629 (1134)
Q Consensus       567 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~-~dg~i~iwd~~~  629 (1134)
                      ++++.      .|.+||+++++.+.+|.+|.. +|+++.|.-.     |.+++++. .+..+.+|-.+.
T Consensus       160 ~~as~------~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  160 LTASR------QIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             Eeccc------eEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            98864      499999999999999999987 9999998776     67777654 566778886654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.24  E-value=2.3e-08  Score=107.49  Aligned_cols=267  Identities=14%  Similarity=0.151  Sum_probs=166.0

Q ss_pred             CcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeC----------CCEEEEEEcc
Q 001163          379 GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS----------KHIVHLYTYH  448 (1134)
Q Consensus       379 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~----------dg~v~iwd~~  448 (1134)
                      ++|.+.|..+++.+....                  .|....  .+ +||||+.|.++..          +..|.+||..
T Consensus        27 ~~v~ViD~~~~~v~g~i~------------------~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~   85 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTD------------------GGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ   85 (352)
T ss_pred             ceEEEEECCCCEEEEEEE------------------ccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence            889999999988765411                  122112  24 9999998887755          7789999999


Q ss_pred             CCceeeeeeeeec--C---CCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccE
Q 001163          449 GGDELRNHLEIEA--H---VGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQF  523 (1134)
Q Consensus       449 ~~~~~~~~~~l~~--h---~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  523 (1134)
                      +.+.+.... +..  +   ...-..++++|||+.+++.--+.+..|.+.|+.+++.+.++.--.. ..-..   ..+...
T Consensus        86 t~~~~~~i~-~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-~~vy~---t~e~~~  160 (352)
T TIGR02658        86 THLPIADIE-LPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-YHIFP---TANDTF  160 (352)
T ss_pred             cCcEEeEEc-cCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-cEEEE---ecCCcc
Confidence            998776432 111  1   2234478999999953222224489999999999999988764221 11111   111122


Q ss_pred             EEEecCCCcEEEEecCCCCceee-----ecCCCCCe-eEEEECc-CCCEEEEEecCCCCCeEEEEEeCCCC-----eeEE
Q 001163          524 IFSTATDGKIKAWLYDNLGSRVD-----YDAPGHSS-TMMAYSA-DGARLFSCGTNKEGESYLVEWNESEG-----AVKR  591 (1134)
Q Consensus       524 l~s~s~dg~i~vwd~~~~~~~~~-----~~~~~~~v-~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~-----~~~~  591 (1134)
                      . .-+.||......++..+....     +......+ ..-.|++ +|+++.....     +.|.+.|+...     +...
T Consensus       161 ~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-----G~V~~id~~~~~~~~~~~~~  234 (352)
T TIGR02658       161 F-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-----GKIFQIDLSSGDAKFLPAIE  234 (352)
T ss_pred             E-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-----CeEEEEecCCCcceecceee
Confidence            2 333455555544443322111     00100000 0013455 7887776542     46999995432     2232


Q ss_pred             EecCC------CCCceEEEEEcCCCCEEEEEe----------CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCc
Q 001163          592 TYHGL------GKRSVGVVQFDTTKNRFLAAG----------DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI  655 (1134)
Q Consensus       592 ~~~~~------~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~  655 (1134)
                      .+...      ......-+++++++++++...          ..+.|.++|..+++.+..+...   ..+..++++||++
T Consensus       235 ~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG---~~~~~iavS~Dgk  311 (352)
T TIGR02658       235 AFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG---HEIDSINVSQDAK  311 (352)
T ss_pred             eccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC---CceeeEEECCCCC
Confidence            22211      112334599999999988843          2257999999999999998752   3678999999999


Q ss_pred             -EEEEEE-CCCcEEEEEccCCceeEEEe
Q 001163          656 -LLAVST-NDNGIKILANADGIRLLRTV  681 (1134)
Q Consensus       656 -~l~~~~-~dg~i~iw~~~~~~~~~~~~  681 (1134)
                       +|++.. .++.|.++|..++ +.++.+
T Consensus       312 p~lyvtn~~s~~VsViD~~t~-k~i~~i  338 (352)
T TIGR02658       312 PLLYALSTGDKTLYIFDAETG-KELSSV  338 (352)
T ss_pred             eEEEEeCCCCCcEEEEECcCC-eEEeee
Confidence             777666 5788999999988 555554

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.23  E-value=2.3e-09  Score=124.29  Aligned_cols=213  Identities=15%  Similarity=0.142  Sum_probs=138.9

Q ss_pred             EEEeecCCCeeEEEEcCCCCeEEEEEeCC--CcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc
Q 001163          350 VMTLNQGSAVKSMDFHPVQQILLVVGTNM--GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS  427 (1134)
Q Consensus       350 ~~~~~h~~~V~~v~fsp~g~~lla~gs~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  427 (1134)
                      ...+.+...+.+.+|||||++++.+...+  ..|++||+.+++...                    +..+.+.+.+++|+
T Consensus       183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~~~~~~~~~~~~s  242 (417)
T TIGR02800       183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------VASFPGMNGAPAFS  242 (417)
T ss_pred             EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------eecCCCCccceEEC
Confidence            33445677899999999999876554333  479999998875432                    23345567789999


Q ss_pred             CCCCEEEEE-eCCC--EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeC-CC--eEEEEECCCCceeE
Q 001163          428 PDGTLFGVA-YSKH--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-DR--VIKVWDAVTGTKQY  501 (1134)
Q Consensus       428 pd~~~las~-s~dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~-d~--~i~iwd~~~~~~~~  501 (1134)
                      |||+.|+.. +.++  .|.+||+.++...    .+..+........|+|||+.  |+..+. ++  .|.++|+.+++.. 
T Consensus       243 pDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~~--l~~~s~~~g~~~iy~~d~~~~~~~-  315 (417)
T TIGR02800       243 PDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGKS--IAFTSDRGGSPQIYMMDADGGEVR-  315 (417)
T ss_pred             CCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCCE--EEEEECCCCCceEEEEECCCCCEE-
Confidence            999987754 4444  5888999887532    24445555667899999994  544443 33  6888888777643 


Q ss_pred             EecCCCcCEEEEeccccCCccEEEEecCCC---cEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeE
Q 001163          502 IFEGHESPVYSICPHHKENIQFIFSTATDG---KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESY  578 (1134)
Q Consensus       502 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~  578 (1134)
                      .+..+...+....|++  +|.+++.++.++   .|.+||+.+..... +.. ........|+|||+.|+....++ +...
T Consensus       316 ~l~~~~~~~~~~~~sp--dg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~-~~~~~~p~~spdg~~l~~~~~~~-~~~~  390 (417)
T TIGR02800       316 RLTFRGGYNASPSWSP--DGDLIAFVHREGGGFNIAVMDLDGGGERV-LTD-TGLDESPSFAPNGRMILYATTRG-GRGV  390 (417)
T ss_pred             EeecCCCCccCeEECC--CCCEEEEEEccCCceEEEEEeCCCCCeEE-ccC-CCCCCCceECCCCCEEEEEEeCC-CcEE
Confidence            3433445556666654  557787777665   78888887643322 222 22345568999999998887643 3455


Q ss_pred             EEEEeCCCCeeEEEecC
Q 001163          579 LVEWNESEGAVKRTYHG  595 (1134)
Q Consensus       579 i~~wd~~~~~~~~~~~~  595 (1134)
                      +.+.+.. +.....+..
T Consensus       391 l~~~~~~-g~~~~~~~~  406 (417)
T TIGR02800       391 LGLVSTD-GRFRARLPL  406 (417)
T ss_pred             EEEEECC-CceeeECCC
Confidence            6666644 444444443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.20  E-value=2.1e-09  Score=105.87  Aligned_cols=254  Identities=16%  Similarity=0.079  Sum_probs=166.7

Q ss_pred             cCCCeeEEEEcC---CCCeEEEEEeCCCcEEEEecCCccceee-eceeeeeccccCccccccccccCCCCEEEEEEcCCC
Q 001163          355 QGSAVKSMDFHP---VQQILLVVGTNMGDVMLWEVGSRERIAV-KSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG  430 (1134)
Q Consensus       355 h~~~V~~v~fsp---~g~~lla~gs~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~  430 (1134)
                      ..+.+..+.|.-   +|...++-...+|.|.++.....+.... +.+.            .  ..-......++.|++.+
T Consensus        68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls------------~--~ki~~~~~lslD~~~~~  133 (339)
T KOG0280|consen   68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLS------------S--KKISVVEALSLDISTSG  133 (339)
T ss_pred             cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccc------------h--hhhhheeeeEEEeeccC
Confidence            445666677763   4554566777788888888764432221 0000            0  00011135678999999


Q ss_pred             CEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECC-CCceeEE-ecCCCc
Q 001163          431 TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV-TGTKQYI-FEGHES  508 (1134)
Q Consensus       431 ~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~-~~~~~~~-~~~h~~  508 (1134)
                      ..++++-.+|.+.+-+..... +.....+++|+...+-+.|+....+ ++.+||.|+.+..||++ .++.+.. .+-|..
T Consensus       134 ~~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~  211 (339)
T KOG0280|consen  134 TKIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS  211 (339)
T ss_pred             ceEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeec
Confidence            999999999999866554433 4444468899999999999987766 79999999999999998 4555554 556899


Q ss_pred             CEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCC--CEEEEEecCCCCCeEEEEEeCCC
Q 001163          509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADG--ARLFSCGTNKEGESYLVEWNESE  586 (1134)
Q Consensus       509 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~~~~~~i~~wd~~~  586 (1134)
                      .|.+|.-++ +.+.+|++|+.|-.|++||.++......-..-.+.|..+..+|.-  +.|+++-.++     ..+-+...
T Consensus       212 GV~SI~ss~-~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-----~ki~~~~~  285 (339)
T KOG0280|consen  212 GVVSIYSSP-PKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-----AKILDSSD  285 (339)
T ss_pred             ceEEEecCC-CCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-----ceEEEecc
Confidence            999998654 455899999999999999999776665555556789999998854  3444444333     44555443


Q ss_pred             C--e---eEEEecCCCCCceEEEEEcCCCCEEEEEe-CCCeEE-EEEcCCCc
Q 001163          587 G--A---VKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIK-FWDMDNVN  631 (1134)
Q Consensus       587 ~--~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~-iwd~~~~~  631 (1134)
                      +  +   .......|.. -+..-.|......+++++ .|+.++ +|-..++.
T Consensus       286 ~~~e~~~~~~s~~~hdS-l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~  336 (339)
T KOG0280|consen  286 KVLEFQIVLPSDKIHDS-LCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE  336 (339)
T ss_pred             cccchheeeeccccccc-eeeccccccccceeeeeeccccceeeeeeeccCC
Confidence            3  2   2222333332 223333433335678876 666654 77554443

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.12  E-value=4.1e-08  Score=111.79  Aligned_cols=306  Identities=11%  Similarity=0.047  Sum_probs=180.2

Q ss_pred             cEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCce
Q 001163          522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSV  601 (1134)
Q Consensus       522 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v  601 (1134)
                      ..++.++.++.|..+|..+++.................  ++..++.++.    ++.++.+|..+|+.+........ ..
T Consensus        66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~----~g~l~ald~~tG~~~W~~~~~~~-~~  138 (377)
T TIGR03300        66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTE----KGEVIALDAEDGKELWRAKLSSE-VL  138 (377)
T ss_pred             CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcC----CCEEEEEECCCCcEeeeeccCce-ee
Confidence            57888888899999998888777665554432222222  4566666654    34699999999998877654322 11


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCC---cceEEEcCCCcEEEEEECCCcEEEEEccCCceeE
Q 001163          602 GVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQA---SPCIRFNKEGILLAVSTNDNGIKILANADGIRLL  678 (1134)
Q Consensus       602 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~  678 (1134)
                      .....  .+..++.++.+|.|+.||..+|+.+...........   ......  .+..++.+..+|.+..+|..++....
T Consensus       139 ~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W  214 (377)
T TIGR03300       139 SPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLW  214 (377)
T ss_pred             cCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEee
Confidence            11122  245777888899999999999998877654321100   011111  12467778888999999988874322


Q ss_pred             EEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecc
Q 001163          679 RTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTE  758 (1134)
Q Consensus       679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~  758 (1134)
                      . .......                                                   +.      . ...++.+.  
T Consensus       215 ~-~~~~~~~---------------------------------------------------g~------~-~~~~~~~~--  233 (377)
T TIGR03300       215 E-QRVALPK---------------------------------------------------GR------T-ELERLVDV--  233 (377)
T ss_pred             e-eccccCC---------------------------------------------------CC------C-chhhhhcc--
Confidence            1 1100000                                                   00      0 00000000  


Q ss_pred             cCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCC
Q 001163          759 ITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDIS  838 (1134)
Q Consensus       759 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  838 (1134)
                                      ..    ...+  .+..+++++.+|.+..|+....+             .+|....+        
T Consensus       234 ----------------~~----~p~~--~~~~vy~~~~~g~l~a~d~~tG~-------------~~W~~~~~--------  270 (377)
T TIGR03300       234 ----------------DG----DPVV--DGGQVYAVSYQGRVAALDLRSGR-------------VLWKRDAS--------  270 (377)
T ss_pred             ----------------CC----ccEE--ECCEEEEEEcCCEEEEEECCCCc-------------EEEeeccC--------
Confidence                            00    0011  13456667777888887654321             23332210        


Q ss_pred             CCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCC-CCeEEEEEcCCCCcEEEEEeCCCcEEEEEccc
Q 001163          839 DTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPP-PAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV  916 (1134)
Q Consensus       839 ~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~  916 (1134)
                            .....+  .++..+++++ +|.+..+|..+++.+....... .........   +..|++++.+|.|+++|..+
T Consensus       271 ------~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~---g~~l~~~~~~G~l~~~d~~t  339 (377)
T TIGR03300       271 ------SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVV---GGYLVVGDFEGYLHWLSRED  339 (377)
T ss_pred             ------CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEE---CCEEEEEeCCCEEEEEECCC
Confidence                  011112  2344555555 8999999999998887663222 222333332   34788899999999999999


Q ss_pred             ceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEE
Q 001163          917 DEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW  954 (1134)
Q Consensus       917 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iw  954 (1134)
                      |+.+.+++.+...+..--...++ .|+.++.||.|..|
T Consensus       340 G~~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~~~  376 (377)
T TIGR03300       340 GSFVARLKTDGSGIASPPVVVGD-GLLVQTRDGDLYAF  376 (377)
T ss_pred             CCEEEEEEcCCCccccCCEEECC-EEEEEeCCceEEEe
Confidence            99998888766544433222344 58888999988765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.05  E-value=2.4e-07  Score=105.51  Aligned_cols=183  Identities=11%  Similarity=0.038  Sum_probs=116.0

Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEE
Q 001163          479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMA  558 (1134)
Q Consensus       479 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  558 (1134)
                      .++.++.++.|..+|..+|+.+..+.-.........    -++..++.++.++.+..+|..+++................
T Consensus        67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~----v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~  142 (377)
T TIGR03300        67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG----ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL  142 (377)
T ss_pred             EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE----EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence            578888899999999999999887654332112222    2336788888999999999988887766554332111111


Q ss_pred             ECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCce-----EEEEEcCCCCEEEEEeCCCeEEEEEcCCCcee
Q 001163          559 YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSV-----GVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL  633 (1134)
Q Consensus       559 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  633 (1134)
                      .  .+..++.+..    ++.++.||.++|+.+..+..... ..     ......  +..++.+..+|.+..+|..+|+.+
T Consensus       143 v--~~~~v~v~~~----~g~l~a~d~~tG~~~W~~~~~~~-~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~  213 (377)
T TIGR03300       143 V--ANGLVVVRTN----DGRLTALDAATGERLWTYSRVTP-ALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPL  213 (377)
T ss_pred             E--ECCEEEEECC----CCeEEEEEcCCCceeeEEccCCC-ceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEe
Confidence            2  2345555433    44699999999998877655432 11     111121  246778888899999999999877


Q ss_pred             EEEecCCCC--CC---cceEEEcC--CCcEEEEEECCCcEEEEEccCC
Q 001163          634 ASIDADGGL--QA---SPCIRFNK--EGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       634 ~~~~~~~~~--~~---v~~v~~sp--~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      .........  ..   ...+.-+|  .+..+++++.+|.++.||..++
T Consensus       214 W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG  261 (377)
T TIGR03300       214 WEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG  261 (377)
T ss_pred             eeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence            654321100  00   00111111  3557778888999999998877

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.04  E-value=2.9e-09  Score=116.94  Aligned_cols=278  Identities=17%  Similarity=0.260  Sum_probs=187.4

Q ss_pred             eeEeCCCCCCcccccCCCC-------CceeEEEeec--CCCeeEEEEcCCC--CeEEEEEeCCCcEEEEecCCccceeee
Q 001163          327 PVAYTPQSLGQSSYSTDDL-------PKTVVMTLNQ--GSAVKSMDFHPVQ--QILLVVGTNMGDVMLWEVGSRERIAVK  395 (1134)
Q Consensus       327 ~~~~s~~~~~l~~~~~d~~-------~~~~~~~~~h--~~~V~~v~fsp~g--~~lla~gs~dg~v~iwd~~~~~~~~~~  395 (1134)
                      ++..+|.|+.++..+..++       +...-+-+.|  .-.|-.+.|||.-  .+. ++......-.||++.......  
T Consensus        29 a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~w-iVsts~qkaiiwnlA~ss~~a--  105 (1081)
T KOG0309|consen   29 AVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYW-IVSTSNQKAIIWNLAKSSSNA--  105 (1081)
T ss_pred             ceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCcee-EEecCcchhhhhhhhcCCccc--
Confidence            4568999998887765543       4444455554  3567888998853  333 344555667788876443221  


Q ss_pred             ceeeeeccccCccccccccccCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecC
Q 001163          396 SFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP  474 (1134)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~  474 (1134)
                                    ..-++.||+..|+.+.|.| ....+|+++.|-.|..||+++....  +.....-...-..|+|+..
T Consensus       106 --------------Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p--~ys~~~w~s~asqVkwnyk  169 (1081)
T KOG0309|consen  106 --------------IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP--FYSTSSWRSAASQVKWNYK  169 (1081)
T ss_pred             --------------eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcc--eeeeecccccCceeeeccc
Confidence                          1124789999999999999 4568999999999999999986532  2234444455678999987


Q ss_pred             CCceEEEEEeCCCeEEEEECCCC-ceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecC-CCC
Q 001163          475 NKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA-PGH  552 (1134)
Q Consensus       475 ~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~  552 (1134)
                      ..  .+...+..+.|++||.+.| .++..+++|...|+.+.|..--. ..+.+.+.|++|++||.+.......... ...
T Consensus       170 ~p--~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~  246 (1081)
T KOG0309|consen  170 DP--NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNF  246 (1081)
T ss_pred             Cc--chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceeccccC
Confidence            66  4666677789999999876 56778999999999998754332 4688999999999999886554443322 234


Q ss_pred             CeeEEEECcCCCEEEEEecCCCCCeEEEE---------EeCCC-CeeEEEecCCCCCceEEEEEcC--------C--CCE
Q 001163          553 SSTMMAYSADGARLFSCGTNKEGESYLVE---------WNESE-GAVKRTYHGLGKRSVGVVQFDT--------T--KNR  612 (1134)
Q Consensus       553 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~---------wd~~~-~~~~~~~~~~~~~~v~~~~~~~--------~--~~~  612 (1134)
                      +|..-.+.|-|+-..+--..+  ...+.+         |+..+ .+++.+|.||.+ .|...-|-.        +  .-.
T Consensus       247 piw~~r~~Pfg~g~~~mp~~G--~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d~rdfQ  323 (1081)
T KOG0309|consen  247 PIWRGRYLPFGEGYCIMPMVG--GNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYDSRDFQ  323 (1081)
T ss_pred             cceeccccccCceeEeccccC--CeeeeeccccchhhhhccccCCcceeeecCcch-HHHHHhhhhcccccCCCCcccee
Confidence            666666666554333222111  112333         44433 367899999987 443332221        1  236


Q ss_pred             EEEEeCCCeEEEEEcCC
Q 001163          613 FLAAGDEFMIKFWDMDN  629 (1134)
Q Consensus       613 l~~~~~dg~i~iwd~~~  629 (1134)
                      |++-+.|..+++|-+.+
T Consensus       324 LVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  324 LVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             EEEeecCCceEeeeccH
Confidence            99999999999998754

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.98  E-value=7e-08  Score=95.34  Aligned_cols=271  Identities=13%  Similarity=0.100  Sum_probs=170.6

Q ss_pred             CcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC---CCC-EEEEEeCCCEEEEEEccCCceee
Q 001163          379 GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP---DGT-LFGVAYSKHIVHLYTYHGGDELR  454 (1134)
Q Consensus       379 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp---d~~-~las~s~dg~v~iwd~~~~~~~~  454 (1134)
                      |.+.+|++...+......+                ....+..+..+.|.-   +|. .++-+-.+|.|.++.........
T Consensus        46 Gkl~Lys~~d~~~~~l~~~----------------q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~  109 (339)
T KOG0280|consen   46 GKLHLYSLEDMKLSPLDTL----------------QCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSV  109 (339)
T ss_pred             cceEEEeecccccCcccee----------------eeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeee
Confidence            5677888776654431111                123456777888874   555 66777888999999876544332


Q ss_pred             eeeeeecCCCC---EEEEEEecCCCceEEEEEeCCCeEEEEECCCCcee--EEecCCCcCEEEEeccccCCccEEEEecC
Q 001163          455 NHLEIEAHVGS---VNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ--YIFEGHESPVYSICPHHKENIQFIFSTAT  529 (1134)
Q Consensus       455 ~~~~l~~h~~~---V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~  529 (1134)
                      .+..+..-.-.   -.++.|++-+.  -++++..+|.+.+-+.......  ++++.|..+.+...|+.... +++++|+.
T Consensus       110 ~L~~ls~~ki~~~~~lslD~~~~~~--~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~p-nlvytGgD  186 (339)
T KOG0280|consen  110 HLRGLSSKKISVVEALSLDISTSGT--KIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEP-NLVYTGGD  186 (339)
T ss_pred             eecccchhhhhheeeeEEEeeccCc--eEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCC-ceEEecCC
Confidence            22222222222   34778998888  5888888999987765555444  48899999999998876544 79999999


Q ss_pred             CCcEEEEecCCCC-ceee-ecCCCCCeeEEEECc-CCCEEEEEecCCCCCeEEEEEeCC-CCeeEEEecCCCCCceEEEE
Q 001163          530 DGKIKAWLYDNLG-SRVD-YDAPGHSSTMMAYSA-DGARLFSCGTNKEGESYLVEWNES-EGAVKRTYHGLGKRSVGVVQ  605 (1134)
Q Consensus       530 dg~i~vwd~~~~~-~~~~-~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~  605 (1134)
                      |+.+..||++..+ .... ...|...|.++.-+| ++.++++|+.|.    .|++||.+ -++++..-.  -.+.|..+.
T Consensus       187 D~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe----~i~~~DtRnm~kPl~~~~--v~GGVWRi~  260 (339)
T KOG0280|consen  187 DGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDE----CIRVLDTRNMGKPLFKAK--VGGGVWRIK  260 (339)
T ss_pred             CceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEecccc----ceeeeehhcccCccccCc--cccceEEEE
Confidence            9999999999443 2222 234566888887775 577899998754    59999998 456654333  335899999


Q ss_pred             EcCCCC-EEEEEeCCCeEEEEEcCCCcee--EEEe-cCCCCCCcceEEEcCCCcEEEEEE-CCCcEE-EEEccCC
Q 001163          606 FDTTKN-RFLAAGDEFMIKFWDMDNVNLL--ASID-ADGGLQASPCIRFNKEGILLAVST-NDNGIK-ILANADG  674 (1134)
Q Consensus       606 ~~~~~~-~l~~~~~dg~i~iwd~~~~~~~--~~~~-~~~~~~~v~~v~~sp~~~~l~~~~-~dg~i~-iw~~~~~  674 (1134)
                      .+|.-. .++.++.-.-.+|-+...+...  ..+. ...+.+-+..-.|......+++++ .|+.++ +|-..++
T Consensus       261 ~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  261 HHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             ecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence            988643 3334444444666666544322  1111 112333344444543345677754 466655 7755444

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.98  E-value=2.2e-07  Score=116.89  Aligned_cols=261  Identities=9%  Similarity=0.034  Sum_probs=162.5

Q ss_pred             EEEEEecC-CceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeE
Q 001163          780 SRLIYTNS-GLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYV  858 (1134)
Q Consensus       780 ~~l~~spd-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l  858 (1134)
                      ..++++++ +..+++-..++.|++|+........-+.   .+.   .....|....      +.-.....+++++++..|
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~---~g~---~G~~dG~~~~------a~f~~P~GIavd~~gn~L  638 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGS---TGE---EGLRDGSFED------ATFNRPQGLAYNAKKNLL  638 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEcc---CCC---cCCCCCchhc------cccCCCcEEEEeCCCCEE
Confidence            46788875 5666666678889988765321000000   000   0000111000      122345789999998877


Q ss_pred             EEee--CCeEEEEEccCCeEEEEecCC-----------------CCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceE
Q 001163          859 MSAS--GGKISLFNMMTFKTMTTFMPP-----------------PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEV  919 (1134)
Q Consensus       859 a~~s--dg~i~lwd~~~~~~~~~~~~~-----------------~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~  919 (1134)
                      +++.  ++.|+++|..++. +.++.+.                 -..-..++|+|+++.++++.+.++.|++||..++..
T Consensus       639 YVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v  717 (1057)
T PLN02919        639 YVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT  717 (1057)
T ss_pred             EEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE
Confidence            7765  4679999987754 3333210                 112467999996667777778889999999987754


Q ss_pred             EEecc---------Cc------cCceEEEEEeeCCCE-EEEEeCCCcEEEEECCCCccccce---------eeeec--CC
Q 001163          920 KTKLK---------GH------QKRITGLAFSNTLNV-LVSSGADSQLCVWSTDGWEKQASK---------FLTIP--NG  972 (1134)
Q Consensus       920 ~~~l~---------~h------~~~V~~l~~s~d~~~-l~s~s~Dg~i~iwd~~~~~~~~~~---------~~~~~--~~  972 (1134)
                      . .+.         ++      -.....|+|+|+++. +++-+.++.|++||+.++......         .....  .+
T Consensus       718 ~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG  796 (1057)
T PLN02919        718 R-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG  796 (1057)
T ss_pred             E-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCC
Confidence            2 111         11      123457999999984 455566789999999875421000         00000  00


Q ss_pred             C--CCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCcccceeeccC-----------CCccCEEEEEEccCCCEEEEE
Q 001163          973 R--TASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLECLKQFVPR-----------EASGPITHATYSCDSQSIYVA 1038 (1134)
Q Consensus       973 ~--~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~-----------~h~~~v~~~~~s~dg~~l~s~ 1038 (1134)
                      .  .........++++++|..+++ ..+++|++||..++.........           ++-.....+++++||+++++-
T Consensus       797 ~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaD  876 (1057)
T PLN02919        797 VGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVAD  876 (1057)
T ss_pred             chhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEE
Confidence            0  000123468999999987666 57899999999877654322110           112367889999999998888


Q ss_pred             ecCCcEEEeecCCCcc
Q 001163         1039 FEEGSVGVLTASTLRL 1054 (1134)
Q Consensus      1039 s~Dg~i~vwd~~~~~~ 1054 (1134)
                      +.++.|++||+.+++.
T Consensus       877 t~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        877 TNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCCCEEEEEECCCCcc
Confidence            8999999999999875

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.97  E-value=2.8e-07  Score=116.00  Aligned_cols=254  Identities=11%  Similarity=0.060  Sum_probs=159.4

Q ss_pred             eEEEEcCCCC-eEEEee-CCeEEEEEccCCeEEEEecC--C------------CCCeEEEEEcCCCCcEEEEE-eCCCcE
Q 001163          847 PCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMTTFMP--P------------PPAATFLAFHPQDNNIIAIG-MEDSSI  909 (1134)
Q Consensus       847 ~~v~~s~dg~-~la~~s-dg~i~lwd~~~~~~~~~~~~--~------------~~~v~~l~~sp~~~~~la~g-~~dg~i  909 (1134)
                      ..+++++++. ++++-. ++.|++||.. +..+..+.+  .            ......+++.+ ++..|+++ ...+.|
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I  648 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL  648 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence            4678887644 444444 6889999985 444444332  1            12357899998 56555444 456789


Q ss_pred             EEEEcccceEEEeccC--c---------------cCceEEEEEee-CCCEEEEEeCCCcEEEEECCCCcccccee---ee
Q 001163          910 QIYNVRVDEVKTKLKG--H---------------QKRITGLAFSN-TLNVLVSSGADSQLCVWSTDGWEKQASKF---LT  968 (1134)
Q Consensus       910 ~iwd~~~~~~~~~l~~--h---------------~~~V~~l~~s~-d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~---~~  968 (1134)
                      +++|..++.. .++.+  .               -..-..++|+| ++..+++.+.++.|++||..++.......   ..
T Consensus       649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~  727 (1057)
T PLN02919        649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER  727 (1057)
T ss_pred             EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence            9999877653 33311  0               11235799999 56677777888999999987754211000   00


Q ss_pred             ecCCCC---CCCCCceEEEEcCCCCEEEE--EeeceEEEEeCCCcccceee-----------ccCC--------CccCEE
Q 001163          969 IPNGRT---ASALADTRVQFHLDQTHLLA--VHETQIAIYEAPKLECLKQF-----------VPRE--------ASGPIT 1024 (1134)
Q Consensus       969 ~~~~~~---~~~~~v~~l~fs~dg~~l~~--~~d~~i~iwd~~~~~~~~~~-----------~~~~--------h~~~v~ 1024 (1134)
                      ...+..   ........++|+|||++|++  +.+++|++||+.++......           ....        .-....
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~  807 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL  807 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence            000100   01134567999999987666  36689999999876532110           0000        012346


Q ss_pred             EEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcc-cC-----CCCCCCceeEEEEecCCCCCEEEEEecCCcEEE
Q 001163         1025 HATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAY-LP-----TNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYI 1098 (1134)
Q Consensus      1025 ~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~-~~-----~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~v 1098 (1134)
                      .+++++||.++++-+.++.|++||..++........... ..     .+.-.  .+..+++++ +++++++-+.+++|++
T Consensus       808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~--~P~GIavd~-dG~lyVaDt~Nn~Irv  884 (1057)
T PLN02919        808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLS--EPAGLALGE-NGRLFVADTNNSLIRY  884 (1057)
T ss_pred             eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccC--CceEEEEeC-CCCEEEEECCCCEEEE
Confidence            899999999888888999999999998876543331110 00     01111  234557778 6889999999999999


Q ss_pred             EeCCCCCC
Q 001163         1099 IEPLEAEG 1106 (1134)
Q Consensus      1099 W~~~~~~~ 1106 (1134)
                      ||+...+.
T Consensus       885 id~~~~~~  892 (1057)
T PLN02919        885 LDLNKGEA  892 (1057)
T ss_pred             EECCCCcc
Confidence            99987653

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.92  E-value=2.9e-09  Score=112.81  Aligned_cols=220  Identities=15%  Similarity=0.238  Sum_probs=164.9

Q ss_pred             EEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEccc-------ceEEEeccCccCceEEEEEeeCCCEEEEEeCCC
Q 001163          877 MTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV-------DEVKTKLKGHQKRITGLAFSNTLNVLVSSGADS  949 (1134)
Q Consensus       877 ~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg  949 (1134)
                      +..+.+|...|..++--. +.+-+++++.|++|++|.++.       ..+..+++.|..+|.++.|-.+-++++++  ||
T Consensus       728 L~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~  804 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG  804 (1034)
T ss_pred             eecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence            345778988888887665 677889999999999999863       24667889999999999999999999877  88


Q ss_pred             cEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcC--CCCEEEE--EeeceEEEEeCCCcccceeecc---CCCccC
Q 001163          950 QLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHL--DQTHLLA--VHETQIAIYEAPKLECLKQFVP---REASGP 1022 (1134)
Q Consensus       950 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~--dg~~l~~--~~d~~i~iwd~~~~~~~~~~~~---~~h~~~ 1022 (1134)
                      .|.+||.-.++...    ++......  +.+..+..-+  |...+.+  +...+|+++|...++....+..   .+...-
T Consensus       805 giHlWDPFigr~La----q~~dapk~--~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~  878 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLA----QMEDAPKE--GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNAL  878 (1034)
T ss_pred             cceeecccccchhH----hhhcCccc--CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchh
Confidence            89999987655322    12222111  2233333322  4444444  3678999999999988777753   334577


Q ss_pred             EEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEE-EeC
Q 001163         1023 ITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYI-IEP 1101 (1134)
Q Consensus      1023 v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~v-W~~ 1101 (1134)
                      +.+++.-+.|++++++-..|+|.+.|..+|+.+..+.+..       .....+  + .| ..+.|+....|.++.+ |-.
T Consensus       879 ~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpme-------cdllql--a-ap-sdq~L~~saldHslaVnWha  947 (1034)
T KOG4190|consen  879 TRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPME-------CDLLQL--A-AP-SDQALAQSALDHSLAVNWHA  947 (1034)
T ss_pred             eeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCccc-------chhhhh--c-Cc-hhHHHHhhcccceeEeeehh
Confidence            8999999999999999999999999999999887776443       112222  1 25 3578888899999999 999


Q ss_pred             CCCCCCccCCCCCCC
Q 001163         1102 LEAEGRWGTSPPNEN 1116 (1134)
Q Consensus      1102 ~~~~~~~~~~~~~~~ 1116 (1134)
                      .++-++..--||-|.
T Consensus       948 ldgimh~q~kpppep  962 (1034)
T KOG4190|consen  948 LDGIMHLQDKPPPEP  962 (1034)
T ss_pred             cCCeeeeccCCCCcc
Confidence            999988888888774

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.92  E-value=7e-09  Score=124.88  Aligned_cols=201  Identities=14%  Similarity=0.235  Sum_probs=160.9

Q ss_pred             cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163          414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD  493 (1134)
Q Consensus       414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd  493 (1134)
                      ...|-..|.++.=+|...+-++|+.||.|++|....++.+....+. |. ..|+.+.|+.+|+  .+..+..||.+.+|.
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence            3446678899999999999999999999999999998877655433 33 8899999999999  688889999999999


Q ss_pred             CCCCceeEEecCCCcCEEEEeccccCCccEEEEec---CCCcEEEEecCCCCc-eeeecCCCCCeeEEEECcCCCEEEEE
Q 001163          494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA---TDGKIKAWLYDNLGS-RVDYDAPGHSSTMMAYSADGARLFSC  569 (1134)
Q Consensus       494 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~  569 (1134)
                      +. .+.....+.|......+.|..    ..+++++   .++.+.+||.-.... -.....|.+.++++++.|....+++|
T Consensus      2280 ~~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISG 2354 (2439)
T ss_pred             cC-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEec
Confidence            65 667777888888888887754    3466653   568899998654322 22337788899999999999999999


Q ss_pred             ecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEec
Q 001163          570 GTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA  638 (1134)
Q Consensus       570 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  638 (1134)
                      +.+|    .|.+||++..+.++++..          +. ...++++|+..|.|+||++..-..+..+..
T Consensus      2355 gr~G----~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2355 GRKG----EVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             CCcC----cEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence            8755    499999998888877664          33 457899999999999999998877776653

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.92  E-value=0.00023  Score=82.74  Aligned_cols=287  Identities=13%  Similarity=0.095  Sum_probs=146.4

Q ss_pred             cEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCC-C
Q 001163          778 RVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKND-S  856 (1134)
Q Consensus       778 ~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg-~  856 (1134)
                      .|.-..|-.|..+|.++..||.+.-|.++.                    .+|......-.. --..++.--.|+..+ +
T Consensus       585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~--------------------~tg~lsd~Kk~~-lGt~P~~Lr~f~sk~~t  643 (1096)
T KOG1897|consen  585 SILLTTFEGDIHYLLVALGDGALLYFVLDI--------------------NTGQLSDRKKVT-LGTQPISLRTFSSKSRT  643 (1096)
T ss_pred             heeeEEeeccceEEEEEcCCceEEEEEEEc--------------------ccceEccccccc-cCCCCcEEEEEeeCCce
Confidence            444555666788999999999988775543                    222211110000 023444444555433 3


Q ss_pred             eEEEeeCCeEEEEEccCCeEEEEecCCCCCeE-EEEEcCC-CCcEEEEEeCCCcEEEEEcccceE--EEeccCccCceEE
Q 001163          857 YVMSASGGKISLFNMMTFKTMTTFMPPPPAAT-FLAFHPQ-DNNIIAIGMEDSSIQIYNVRVDEV--KTKLKGHQKRITG  932 (1134)
Q Consensus       857 ~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~-~l~~sp~-~~~~la~g~~dg~i~iwd~~~~~~--~~~l~~h~~~V~~  932 (1134)
                      .+.+.+|.-..+|.. +++.+.+--. -..+. .+.|+.+ .+..|+++. .+.+++.-++.-+.  ++++.-|. ....
T Consensus       644 ~vfa~sdrP~viY~~-n~kLv~spls-~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~-~prr  719 (1096)
T KOG1897|consen  644 AVFALSDRPTVIYSS-NGKLVYSPLS-LKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGE-SPRR  719 (1096)
T ss_pred             EEEEeCCCCEEEEec-CCcEEEeccc-hHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCC-Chhh
Confidence            455555554444443 2232222100 00111 1112211 223454443 34566665543221  23333332 2445


Q ss_pred             EEEeeCCCEEEEEeCC--------------CcEEEEECCCCccccceeeeecCCCCC-CCCCceEEEEcCC-CCEEEEEe
Q 001163          933 LAFSNTLNVLVSSGAD--------------SQLCVWSTDGWEKQASKFLTIPNGRTA-SALADTRVQFHLD-QTHLLAVH  996 (1134)
Q Consensus       933 l~~s~d~~~l~s~s~D--------------g~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~l~fs~d-g~~l~~~~  996 (1134)
                      +++.+....+++.+..              ..++++|-++-+     .+...+.... ....+.++.|..| +.++++|.
T Consensus       720 I~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~-----vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT  794 (1096)
T KOG1897|consen  720 ICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFE-----VLSSHEFERNETALSIISCKFTDDPNTYYVVGT  794 (1096)
T ss_pred             eEecccceEEEEEecccccchhhcCCcceEEEEEEecCCcee-----EEeeccccccceeeeeeeeeecCCCceEEEEEE
Confidence            5665533333333221              135666655532     2221111111 0134666679888 77877752


Q ss_pred             -----------eceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccC
Q 001163          997 -----------ETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLP 1065 (1134)
Q Consensus       997 -----------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~ 1065 (1134)
                                 .|.|.||....+..+.......-.+.+.++.. -+|++||.-  ...|++|+..+.+.+..       -
T Consensus       795 ~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~I--n~~vrLye~t~~~eLr~-------e  864 (1096)
T KOG1897|consen  795 GLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAGI--NQSVRLYEWTTERELRI-------E  864 (1096)
T ss_pred             EeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEec--CcEEEEEEccccceehh-------h
Confidence                       47788888877444433321111445555553 277877755  46799999988854321       1


Q ss_pred             CCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCCCCCC
Q 001163         1066 TNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGR 1107 (1134)
Q Consensus      1066 ~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~~~ 1107 (1134)
                      .+|...+..+.+.   ..++.+++|..=+++.+-.....||.
T Consensus       865 ~~~~~~~~aL~l~---v~gdeI~VgDlm~Sitll~y~~~eg~  903 (1096)
T KOG1897|consen  865 CNISNPIIALDLQ---VKGDEIAVGDLMRSITLLQYKGDEGN  903 (1096)
T ss_pred             hcccCCeEEEEEE---ecCcEEEEeeccceEEEEEEeccCCc
Confidence            2455667777665   36789999999998887777666644

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.89  E-value=8.9e-07  Score=100.23  Aligned_cols=197  Identities=11%  Similarity=0.030  Sum_probs=124.9

Q ss_pred             CCeeEEEEcCCCCeEEEEEeC---CCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001163          357 SAVKSMDFHPVQQILLVVGTN---MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF  433 (1134)
Q Consensus       357 ~~V~~v~fsp~g~~lla~gs~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l  433 (1134)
                      +.+....|||||+++++..+.   +..|.++|+.+++...                    +....+.+....|||||+.|
T Consensus       188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~~~~SPDG~~l  247 (419)
T PRK04043        188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVVSDVSKDGSKL  247 (419)
T ss_pred             CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEeeEECCCCCEE
Confidence            378899999999974454333   3579999998886543                    22345566778899999877


Q ss_pred             EEEe-C--CCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCC--eEEEEECCCCceeEEec-CCC
Q 001163          434 GVAY-S--KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--VIKVWDAVTGTKQYIFE-GHE  507 (1134)
Q Consensus       434 as~s-~--dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~-~h~  507 (1134)
                      +... .  +..|.++|+.+++. +   .+..+........|+|||+.+++.+ ...+  .|.+.|+.+|+..+... +..
T Consensus       248 a~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F~S-dr~g~~~Iy~~dl~~g~~~rlt~~g~~  322 (419)
T PRK04043        248 LLTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVFVS-DRLGYPNIFMKKLNSGSVEQVVFHGKN  322 (419)
T ss_pred             EEEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEEEE-CCCCCceEEEEECCCCCeEeCccCCCc
Confidence            7543 2  34688888887763 3   2433443344568999999643333 3333  68888988877644332 221


Q ss_pred             cCEEEEeccccCCccEEEEecCC---------CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeE
Q 001163          508 SPVYSICPHHKENIQFIFSTATD---------GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESY  578 (1134)
Q Consensus       508 ~~v~~~~~~~~~~~~~l~s~s~d---------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~  578 (1134)
                          ...|+  ++|+.|+..+..         ..|.+.|++.+... .+... .......|+|||+.++..... .+...
T Consensus       323 ----~~~~S--PDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~-~~~~~  393 (419)
T PRK04043        323 ----NSSVS--TYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYL-GNQSA  393 (419)
T ss_pred             ----CceEC--CCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEcc-CCcEE
Confidence                12554  555666555433         25777787765443 33322 233468899999999887654 34556


Q ss_pred             EEEEeCCCC
Q 001163          579 LVEWNESEG  587 (1134)
Q Consensus       579 i~~wd~~~~  587 (1134)
                      +.+.++...
T Consensus       394 L~~~~l~g~  402 (419)
T PRK04043        394 LGIIRLNYN  402 (419)
T ss_pred             EEEEecCCC
Confidence            778887543

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.89  E-value=8.7e-09  Score=109.24  Aligned_cols=241  Identities=13%  Similarity=0.221  Sum_probs=168.7

Q ss_pred             ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCC-cee---eeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCe
Q 001163          413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGG-DEL---RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV  488 (1134)
Q Consensus       413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~-~~~---~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~  488 (1134)
                      .+.||+..|..++--.+.+-+++++.|.+|++|.++.. ..+   .+..++..|+.+|..+.|..+.+  +++++  |+.
T Consensus       730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~g  805 (1034)
T KOG4190|consen  730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGG  805 (1034)
T ss_pred             cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCc
Confidence            37899999999998889999999999999999998742 222   24457889999999999999887  56554  789


Q ss_pred             EEEEECCCCceeEEec-----CCCcCEEEEeccccCCccEEEEe-cCCCcEEEEecCCCCceeeec-----CCCCCeeEE
Q 001163          489 IKVWDAVTGTKQYIFE-----GHESPVYSICPHHKENIQFIFST-ATDGKIKAWLYDNLGSRVDYD-----APGHSSTMM  557 (1134)
Q Consensus       489 i~iwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~-----~~~~~v~~~  557 (1134)
                      |.+||.--|+.+..+.     +..+.|.++   ++-+..+++.+ +...+|+++|.+..+-...+.     ++..-+.++
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl---~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i  882 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCL---ENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI  882 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEec---ccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence            9999988888776332     222334444   33343555554 788999999988766544433     234468899


Q ss_pred             EECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEE-EEcCCCceeEEE
Q 001163          558 AYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKF-WDMDNVNLLASI  636 (1134)
Q Consensus       558 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~  636 (1134)
                      ++.+.|++++.+-.    .++|.+.|.++|+.+..+..... ....++ .|....++....|.++.+ |....|......
T Consensus       883 aVa~~GN~lAa~LS----nGci~~LDaR~G~vINswrpmec-dllqla-apsdq~L~~saldHslaVnWhaldgimh~q~  956 (1034)
T KOG4190|consen  883 AVADKGNKLAAALS----NGCIAILDARNGKVINSWRPMEC-DLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQD  956 (1034)
T ss_pred             EeccCcchhhHHhc----CCcEEEEecCCCceeccCCcccc-hhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeecc
Confidence            99999999998754    34699999999999887765443 222222 355566777778888888 988777665554


Q ss_pred             ecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEE
Q 001163          637 DADGGLQASPCIRFNKEGILLAVSTNDNGIKILA  670 (1134)
Q Consensus       637 ~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~  670 (1134)
                      .....  +..  -.-.-|..++++.....+.+|.
T Consensus       957 kpppe--pah--flqsvgpSLV~a~~Gn~lgVYa  986 (1034)
T KOG4190|consen  957 KPPPE--PAH--FLQSVGPSLVTAQNGNILGVYA  986 (1034)
T ss_pred             CCCCc--chh--hhhccCceeEEeccCcEEEEEe
Confidence            43211  110  0112366677777777777774

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.85  E-value=1.2e-06  Score=87.53  Aligned_cols=209  Identities=15%  Similarity=0.147  Sum_probs=138.7

Q ss_pred             EEEEcCCCCeEEEeeCCeEEEEEccC--CeEEEE---ecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEe
Q 001163          848 CFALSKNDSYVMSASGGKISLFNMMT--FKTMTT---FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTK  922 (1134)
Q Consensus       848 ~v~~s~dg~~la~~sdg~i~lwd~~~--~~~~~~---~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~  922 (1134)
                      .++.+.||++||+-.|..|.|=...+  ...+..   .+.....=+.++||| |+.+||.+...|+|++||+...+ +..
T Consensus         2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~-lf~   79 (282)
T PF15492_consen    2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSE-LFV   79 (282)
T ss_pred             ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccce-eEE
Confidence            46788999999999998887765432  112222   223344568899999 99999999999999999998544 333


Q ss_pred             ccC-------ccCceEEEEEeeCC------CEEEEEeCCCcEEEEECCCCccc---cceeeeecCCCCCCCCCceEEEEc
Q 001163          923 LKG-------HQKRITGLAFSNTL------NVLVSSGADSQLCVWSTDGWEKQ---ASKFLTIPNGRTASALADTRVQFH  986 (1134)
Q Consensus       923 l~~-------h~~~V~~l~~s~d~------~~l~s~s~Dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~v~~l~fs  986 (1134)
                      +..       -...|..+.|.+-.      ..|+....+|.++-|-+..+...   ....+.... +.+  .+|.++.++
T Consensus        80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~-~yp--~Gi~~~vy~  156 (282)
T PF15492_consen   80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSS-HYP--HGINSAVYH  156 (282)
T ss_pred             cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecc-cCC--CceeEEEEc
Confidence            322       23567777775422      24666677888877776432211   122222222 222  579999999


Q ss_pred             CCCCEEEEE-----eec-------eEEEEeCCCcccceee--------------------c------c-CCCccCEEEEE
Q 001163          987 LDQTHLLAV-----HET-------QIAIYEAPKLECLKQF--------------------V------P-REASGPITHAT 1027 (1134)
Q Consensus       987 ~dg~~l~~~-----~d~-------~i~iwd~~~~~~~~~~--------------------~------~-~~h~~~v~~~~ 1027 (1134)
                      |..++|+++     .++       -+.-|.+-++..-...                    .      . ......|-.|.
T Consensus       157 p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmS  236 (282)
T PF15492_consen  157 PKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMS  236 (282)
T ss_pred             CCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEE
Confidence            999988884     111       3666765443211110                    0      0 11256788999


Q ss_pred             EccCCCEEEEEecCCcEEEeecCCCcceeecCCC
Q 001163         1028 YSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPT 1061 (1134)
Q Consensus      1028 ~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~ 1061 (1134)
                      .||||+.||+...+|.|.+|++.+.+++..+...
T Consensus       237 lSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  237 LSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             ECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence            9999999999999999999999999988776643

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.83  E-value=4e-08  Score=101.66  Aligned_cols=159  Identities=14%  Similarity=0.068  Sum_probs=112.0

Q ss_pred             eEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE----EeeceEEEEeC
Q 001163          930 ITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA----VHETQIAIYEA 1005 (1134)
Q Consensus       930 V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~----~~d~~i~iwd~ 1005 (1134)
                      ...+..++++++||.+..+....++++..... ..++........    ..+++.|-.+.....+    +....+.+|..
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~~----~~~ai~~~~~~~sv~v~dkagD~~~~di~s~  139 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK-GAKLLDVSCVPK----RPTAISFIREDTSVLVADKAGDVYSFDILSA  139 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCC-cceeeeEeeccc----CcceeeeeeccceEEEEeecCCceeeeeecc
Confidence            34456677888888888777777777665432 222333222221    2355666555554444    24466777777


Q ss_pred             CCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCC
Q 001163         1006 PKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPN 1085 (1134)
Q Consensus      1006 ~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~ 1085 (1134)
                      ..+.+...+   +|-+-++.+++|||+++++++..|..|+|-.+..-..+.      ..+.||..=|..+++-    +++
T Consensus       140 ~~~~~~~~l---GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Ie------sfclGH~eFVS~isl~----~~~  206 (390)
T KOG3914|consen  140 DSGRCEPIL---GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIE------SFCLGHKEFVSTISLT----DNY  206 (390)
T ss_pred             cccCcchhh---hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchh------hhccccHhheeeeeec----cCc
Confidence            765554444   899999999999999999999999999998876544332      3345788989888775    578


Q ss_pred             EEEEEecCCcEEEEeCCCCCC
Q 001163         1086 QFALGLTDGGVYIIEPLEAEG 1106 (1134)
Q Consensus      1086 ~l~s~~~Dg~v~vW~~~~~~~ 1106 (1134)
                      .|+++|.|++|++||+.++..
T Consensus       207 ~LlS~sGD~tlr~Wd~~sgk~  227 (390)
T KOG3914|consen  207 LLLSGSGDKTLRLWDITSGKL  227 (390)
T ss_pred             eeeecCCCCcEEEEecccCCc
Confidence            899999999999999987664

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.79  E-value=2e-06  Score=96.58  Aligned_cols=551  Identities=14%  Similarity=0.126  Sum_probs=270.1

Q ss_pred             EEEEEcCCCCEEEEEeC----CCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC
Q 001163          422 NRVMWSPDGTLFGVAYS----KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG  497 (1134)
Q Consensus       422 ~~l~~spd~~~las~s~----dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~  497 (1134)
                      +-..|+|...++|+++.    .|+|-||- ++|+.-+ ..+..-|   +++++|+|..-  .|+.|=.-|.+.+|...+.
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr-~Vt~P~h---atSLCWHpe~~--vLa~gwe~g~~~v~~~~~~   91 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQR-DVTYPVH---ATSLCWHPEEF--VLAQGWEMGVSDVQKTNTT   91 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCc-cccccee---hhhhccChHHH--HHhhccccceeEEEecCCc
Confidence            44679999999998864    57888883 4444221 1122223   56799999876  7888888999999997777


Q ss_pred             ceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCC----C--CeeEEEECcCCCEE-----
Q 001163          498 TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG----H--SSTMMAYSADGARL-----  566 (1134)
Q Consensus       498 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~----~--~v~~~~~s~~~~~l-----  566 (1134)
                      +.-.....|..+|..+.|++  +|..++++..-|.|.+|..+..+.......-.    .  ...+...++++.-+     
T Consensus        92 e~htv~~th~a~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laK  169 (1416)
T KOG3617|consen   92 ETHTVVETHPAPIQGLDWSH--DGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAK  169 (1416)
T ss_pred             eeeeeccCCCCCceeEEecC--CCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhh
Confidence            66666677999999999965  55899999999999999887544333221111    1  23345556664322     


Q ss_pred             -EEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCc
Q 001163          567 -FSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQAS  645 (1134)
Q Consensus       567 -~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v  645 (1134)
                       ++.+ |..+-....-|..++..  +...         -.-.|+|..++.++.+|+|+--|- +|+.........   . 
T Consensus       170 aaVtg-De~alD~~fnwk~~~a~--rs~~---------ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS---~-  232 (1416)
T KOG3617|consen  170 AAVTG-DESALDEPFNWKESLAE--RSDE---------KSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDS---E-  232 (1416)
T ss_pred             hhccC-chhhhcccccCccchhh--cccc---------ccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccc---h-
Confidence             2222 11111112222211111  0000         012467888889999999988774 455554444321   1 


Q ss_pred             ceEEEcCCCcEEEEEECCCcEEEEEc-cCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccc
Q 001163          646 PCIRFNKEGILLAVSTNDNGIKILAN-ADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAA  724 (1134)
Q Consensus       646 ~~v~~sp~~~~l~~~~~dg~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  724 (1134)
                      ..+-|.+...-+++...+-.+.++-. ..|.         .....                                   
T Consensus       233 vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~---------~ee~~-----------------------------------  268 (1416)
T KOG3617|consen  233 VQMLFMGYCEAISIIIEFLRDCLIFVLAKGT---------SEERC-----------------------------------  268 (1416)
T ss_pred             HHHHHhcccceEEEEeeeceeeEEEecCCCc---------hHHhh-----------------------------------
Confidence            23455554444444433333333222 1110         00000                                   


Q ss_pred             cccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeee
Q 001163          725 AMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWK  804 (1134)
Q Consensus       725 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~  804 (1134)
                       .+.+++.....  ...++++.+.|.++         +..  .+   .......+.+++++..+..+..+...|.+.+|.
T Consensus       269 -~vk~sgk~Ggr--qGgiA~sEssGvLr---------~~e--Ky---g~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~  331 (1416)
T KOG3617|consen  269 -AVKVSGKLGGR--QGGIACSESSGVLR---------KSE--KY---GLELGEGILCMCYGEKEIRLWAGTKEGNVTIWL  331 (1416)
T ss_pred             -hhhhccccCCc--cCcccccccccccc---------CCc--ch---hhhcCCceEEEEEeccceEEEecccCCcEEEee
Confidence             00000000000  00122222222111         000  01   112457899999999999999999999999995


Q ss_pred             cCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEE--------------EE
Q 001163          805 WPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISL--------------FN  870 (1134)
Q Consensus       805 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~l--------------wd  870 (1134)
                      -....      .....++..|.+.+...         ..+.|+.+.|.|--..+++-+...+.+              |-
T Consensus       332 ~v~~~------f~g~p~~d~w~l~~~~e---------~~g~I~~i~Wg~~k~~~avn~~~~v~ll~E~~l~~~h~~~~~A  396 (1416)
T KOG3617|consen  332 DVNKG------FQGDPTIDVWTLNGKRE---------SLGKISLIRWGPIKSTAAVNTEEDVVLLGENSLTVKHRGKMAA  396 (1416)
T ss_pred             ecCcc------ccCCCCcceEEecCchh---------hccceEEEEeccccchhhhhhhhheeeeccCchHHHHhhhhHH
Confidence            43221      22222445565543322         346788888888655555444222222              21


Q ss_pred             ccCCe----EEEEecCC------CCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEE--eccCccCceEEEEEeeC
Q 001163          871 MMTFK----TMTTFMPP------PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKT--KLKGHQKRITGLAFSNT  938 (1134)
Q Consensus       871 ~~~~~----~~~~~~~~------~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~--~l~~h~~~V~~l~~s~d  938 (1134)
                      +.+..    +...+.|-      .-++..++.+.   .-| +..+..+|.+|++.+.-.+.  ........-+.++....
T Consensus       397 ~q~ss~S~~L~hc~sGv~~~l~~~~~~~gi~l~e---~~l-vvwNgr~v~~y~lq~SG~la~~~~~tF~cet~~la~~nq  472 (1416)
T KOG3617|consen  397 IQTSSNSFTLLHCTSGVSQDLKLSIPSAGICLGE---KQL-VVWNGRTVVTYDLQTSGSLATIQCTTFSCETTSLAIVNQ  472 (1416)
T ss_pred             hhhcCCceEEEeeccchhhhhhhccchhhheecc---ceE-EEEcCceEEEEEecccchhHHHhhhhhccccchHhHhhc
Confidence            11111    11111110      11233344432   122 23345577788875321111  11112222333333322


Q ss_pred             CCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-eeceEEEEeCCCcccceeeccC
Q 001163          939 LNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLECLKQFVPR 1017 (1134)
Q Consensus       939 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~ 1017 (1134)
                      +  +.+...|. |.+..+.+--..   .+...+-..      .-+-+.--|.++++. ..+.++-+|+...+........
T Consensus       473 N--~ycies~~-Vfvrt~qGtv~q---~i~~seiEg------~~~~ldi~g~~l~v~t~~~~~k~~dvsr~e~ka~~~~~  540 (1416)
T KOG3617|consen  473 N--LYCIESDK-VFVRTLQGTVRQ---EISLSEIEG------VVVLLDIMGELLIVQTVSTVAKRLDVSRAELKAVSYFS  540 (1416)
T ss_pred             c--eEEeccCc-EEEEecchhhhh---hccchhccC------ceehhhhccceeEEeehHHHHHHhhhhhhccccccccc
Confidence            2  33333333 555555441111   111111100      112233456777774 3345555665544333222211


Q ss_pred             -C-----CccCEEEEEEccCCCE--EEEEecC----CcEEEeecCCCcceee--cCCCcccCCCCCCCceeEEEEecCCC
Q 001163         1018 -E-----ASGPITHATYSCDSQS--IYVAFEE----GSVGVLTASTLRLRCR--INPTAYLPTNPSLRVYPLVIAGNPTD 1083 (1134)
Q Consensus      1018 -~-----h~~~v~~~~~s~dg~~--l~s~s~D----g~i~vwd~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~p~~ 1083 (1134)
                       +     .-+.++.+..+..|..  +..+..+    .++.+||.+.++....  +.+...- +.-+..-.++.+-|..++
T Consensus       541 s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~~~~~~lE~ETNa-kkEs~ts~pvr~fWD~~e  619 (1416)
T KOG3617|consen  541 SDRGMTDTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRFQMMNHLEPETNA-KKESSTSPPVRFFWDENE  619 (1416)
T ss_pred             ccccccCCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhHHHhhccCccccc-cccccCCCCceeeecCCC
Confidence             1     1345555555555543  3333333    4799999999876432  1111100 011222245666777767


Q ss_pred             CCEEEEEe
Q 001163         1084 PNQFALGL 1091 (1134)
Q Consensus      1084 ~~~l~s~~ 1091 (1134)
                      +.+|++-.
T Consensus       620 pRllv~E~  627 (1416)
T KOG3617|consen  620 PRLLVVEC  627 (1416)
T ss_pred             CcEEEEEe
Confidence            77777543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.78  E-value=7.4e-08  Score=99.77  Aligned_cols=163  Identities=16%  Similarity=0.137  Sum_probs=111.6

Q ss_pred             eeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEE---
Q 001163          359 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV---  435 (1134)
Q Consensus       359 V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las---  435 (1134)
                      +..+.++|.|+ ++|++..+....+.++.....    ..++++..         .+..   .-+++.|-.+...+..   
T Consensus        65 ~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~----~~kl~~~~---------~v~~---~~~ai~~~~~~~sv~v~dk  127 (390)
T KOG3914|consen   65 PALVLTSDSGR-LVAVATSSKQRAVFDYRENPK----GAKLLDVS---------CVPK---RPTAISFIREDTSVLVADK  127 (390)
T ss_pred             ccccccCCCce-EEEEEeCCCceEEEEEecCCC----cceeeeEe---------eccc---CcceeeeeeccceEEEEee
Confidence            34556677777 678887777776777655443    11222211         0111   2233444444444444   


Q ss_pred             EeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEe-cCCCcCEEEEe
Q 001163          436 AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF-EGHESPVYSIC  514 (1134)
Q Consensus       436 ~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~  514 (1134)
                      .+....+.+|....+.+.    .+-||-..++.|+|+||++  +|+|+..|..|+|-....-..+..| -||+.-|..++
T Consensus       128 agD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~is  201 (390)
T KOG3914|consen  128 AGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTIS  201 (390)
T ss_pred             cCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeeee
Confidence            455566777776654432    3668999999999999998  8999999999999877665555554 57999999998


Q ss_pred             ccccCCccEEEEecCCCcEEEEecCCCCceeee
Q 001163          515 PHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY  547 (1134)
Q Consensus       515 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~  547 (1134)
                      ..++   ..|+++|.|++|++||+.+++....+
T Consensus       202 l~~~---~~LlS~sGD~tlr~Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  202 LTDN---YLLLSGSGDKTLRLWDITSGKLLDTC  231 (390)
T ss_pred             eccC---ceeeecCCCCcEEEEecccCCccccc
Confidence            7432   57999999999999999988776443

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.77  E-value=3.1e-08  Score=119.53  Aligned_cols=225  Identities=13%  Similarity=0.188  Sum_probs=163.3

Q ss_pred             CCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecC-CCc
Q 001163          430 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG-HES  508 (1134)
Q Consensus       430 ~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-h~~  508 (1134)
                      ++.......++...-|..+.+...     +..|-..|.++.=+|...  +.+||+.||.|++|....+..+..++. -..
T Consensus      2180 s~~~~~~n~~~~~~tq~~~~~~~~-----~k~~v~~v~r~~sHp~~~--~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s 2252 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGASVM-----IKHPVENVRRMTSHPSDP--YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNS 2252 (2439)
T ss_pred             cccCCcccCCccccceecccceeE-----eecccCceeeecCCCCCc--eEEecCCCceEEEEeccCCCeEEEeeccCcc
Confidence            344444445555566665544322     334556688888788777  789999999999999999988887753 237


Q ss_pred             CEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCe
Q 001163          509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA  588 (1134)
Q Consensus       509 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~  588 (1134)
                      .|+.+.|+.  .|+.+..+..||.+.+|... .+.......|......+.|-.  ..+++.+.+.+ +..+.+||..-..
T Consensus      2253 ~vtr~~f~~--qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d-~~n~~lwDtl~~~ 2326 (2439)
T KOG1064|consen 2253 RVTRSRFNH--QGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSD-NRNVCLWDTLLPP 2326 (2439)
T ss_pred             hhhhhhhcc--cCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCC-CCcccchhcccCc
Confidence            788887754  45788889999999999876 445555666776777777765  56777766544 4469999965432


Q ss_pred             eEEEe-cCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEE
Q 001163          589 VKRTY-HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIK  667 (1134)
Q Consensus       589 ~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~  667 (1134)
                      ...-. ..|.. .++++++.|....|++||.+|.|++||++..+++..++.           ++ ...++++|+..|.++
T Consensus      2327 ~~s~v~~~H~~-gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ik 2393 (2439)
T KOG1064|consen 2327 MNSLVHTCHDG-GATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIK 2393 (2439)
T ss_pred             ccceeeeecCC-CceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceE
Confidence            22212 44444 899999999999999999999999999998887776643           33 567899999999999


Q ss_pred             EEEccCCceeEEEe
Q 001163          668 ILANADGIRLLRTV  681 (1134)
Q Consensus       668 iw~~~~~~~~~~~~  681 (1134)
                      ||++..- ..+..+
T Consensus      2394 Iw~~s~~-~ll~~~ 2406 (2439)
T KOG1064|consen 2394 IWRLSEF-GLLHTF 2406 (2439)
T ss_pred             EEEcccc-chhhcC
Confidence            9998765 344333

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.74  E-value=8.5e-09  Score=115.48  Aligned_cols=216  Identities=16%  Similarity=0.240  Sum_probs=159.4

Q ss_pred             ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeC-CC-eEE
Q 001163          413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-DR-VIK  490 (1134)
Q Consensus       413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~-d~-~i~  490 (1134)
                      .+..|+...+|++||-+.+.|+.|+..|.|+++++.+|....   ..++|..+|+.+.=+.||..  +++.+. .. -..
T Consensus      1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~--~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST--QLTSSSSSSPLSA 1170 (1516)
T ss_pred             hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce--eeeeccccCchHH
Confidence            367899999999999999999999999999999999998665   67899999999999999984  444433 33 467


Q ss_pred             EEECCC-CceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeee-cCC---CCCeeEEEECcCCCE
Q 001163          491 VWDAVT-GTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY-DAP---GHSSTMMAYSADGAR  565 (1134)
Q Consensus       491 iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~---~~~v~~~~~s~~~~~  565 (1134)
                      +|++.. +...++|.+.    .++.|+...  ..-+.|.......+||+.+......+ ...   ...-....|+|+.++
T Consensus      1171 LW~~~s~~~~~Hsf~ed----~~vkFsn~~--q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFDED----KAVKFSNSL--QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred             HhccccccCcccccccc----ceeehhhhH--HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence            999763 5556666542    345665443  33344555567889999987766653 221   123467889999988


Q ss_pred             EEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCc
Q 001163          566 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQAS  645 (1134)
Q Consensus       566 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v  645 (1134)
                      ++--|         .+||.+..+.++.|..... . ..-.|+|.|..++.-++     |||+++.+++.....-    .-
T Consensus      1245 IlndG---------vLWDvR~~~aIh~FD~ft~-~-~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~L----dq 1304 (1516)
T KOG1832|consen 1245 ILNDG---------VLWDVRIPEAIHRFDQFTD-Y-GGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSL----DQ 1304 (1516)
T ss_pred             EeeCc---------eeeeeccHHHHhhhhhhee-c-ccccccCCCceEEeech-----hhhhHHHHHHhcCccc----cc
Confidence            87532         4899999888887766542 1 22459999999998876     9999999988877543    22


Q ss_pred             ceEEEcCCCcEEEE
Q 001163          646 PCIRFNKEGILLAV  659 (1134)
Q Consensus       646 ~~v~~sp~~~~l~~  659 (1134)
                      ..+.|+..|..++.
T Consensus      1305 c~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1305 CAVTFNSTGDVMYA 1318 (1516)
T ss_pred             eEEEeccCccchhh
Confidence            57889888877654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.74  E-value=6.1e-06  Score=93.51  Aligned_cols=197  Identities=11%  Similarity=-0.001  Sum_probs=122.7

Q ss_pred             CEEEEEEcCCCCE-EEEEeCC---CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC--CeEEEEE
Q 001163          420 SVNRVMWSPDGTL-FGVAYSK---HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED--RVIKVWD  493 (1134)
Q Consensus       420 ~V~~l~~spd~~~-las~s~d---g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d--~~i~iwd  493 (1134)
                      .+....|||||+. ++..+.+   ..|.++|+.+++...    +....+......|+|||+. ++++.+.+  ..|.++|
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~----lt~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d  263 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK----IASSQGMLVVSDVSKDGSK-LLLTMAPKGQPDIYLYD  263 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE----EecCCCcEEeeEECCCCCE-EEEEEccCCCcEEEEEE
Confidence            7889999999985 6654443   569999998886432    3335556677889999996 34444444  4688889


Q ss_pred             CCCCceeEEecCCCcCEEEEeccccCCccEEEEec-CCC--cEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEe
Q 001163          494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA-TDG--KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCG  570 (1134)
Q Consensus       494 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  570 (1134)
                      +.+++.. .+..+........|+  +||+.|+..+ ..+  .|.+.|+..++...... .+.  ....|+|||+.++...
T Consensus       264 l~~g~~~-~LT~~~~~d~~p~~S--PDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~--~~~~~SPDG~~Ia~~~  337 (419)
T PRK04043        264 TNTKTLT-QITNYPGIDVNGNFV--EDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGK--NNSSVSTYKNYIVYSS  337 (419)
T ss_pred             CCCCcEE-EcccCCCccCccEEC--CCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCC--cCceECCCCCEEEEEE
Confidence            8777643 344333322233554  4555555444 334  46667776555433222 121  1348999999998877


Q ss_pred             cCCC-----CCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC---CeEEEEEcCCC
Q 001163          571 TNKE-----GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE---FMIKFWDMDNV  630 (1134)
Q Consensus       571 ~~~~-----~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~  630 (1134)
                      ...+     +...|.+.|+.++........ .  ......|+|||+.++....+   ..+.+.+++..
T Consensus       338 ~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~--~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        338 RETNNEFGKNTFNLYLISTNSDYIRRLTAN-G--VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             cCCCcccCCCCcEEEEEECCCCCeEECCCC-C--CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence            5432     224689999988865433332 1  22357899999988776532   23666677543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.74  E-value=3.6e-06  Score=87.15  Aligned_cols=183  Identities=13%  Similarity=0.154  Sum_probs=127.4

Q ss_pred             EEEEcCCCCeEEEee------CCeEEEEEcc-CCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeC---------------
Q 001163          848 CFALSKNDSYVMSAS------GGKISLFNMM-TFKTMTTFMPPPPAATFLAFHPQDNNIIAIGME---------------  905 (1134)
Q Consensus       848 ~v~~s~dg~~la~~s------dg~i~lwd~~-~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~---------------  905 (1134)
                      ..+||+||++|++..      .|.|-|||.. +.+.+.++..+.-.-..+.+.| |++.|+++-.               
T Consensus        55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl  133 (305)
T PF07433_consen   55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNL  133 (305)
T ss_pred             CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecCh
Confidence            578999999999874      2679999998 7888899988777778888999 7866766521               


Q ss_pred             ---CCcEEEEEcccceEEEe--c--cCccCceEEEEEeeCCCEEEEEeCCCc-------EEEEECCCCccccceeeeecC
Q 001163          906 ---DSSIQIYNVRVDEVKTK--L--KGHQKRITGLAFSNTLNVLVSSGADSQ-------LCVWSTDGWEKQASKFLTIPN  971 (1134)
Q Consensus       906 ---dg~i~iwd~~~~~~~~~--l--~~h~~~V~~l~~s~d~~~l~s~s~Dg~-------i~iwd~~~~~~~~~~~~~~~~  971 (1134)
                         +-++...|..+|+++..  +  ..|...|..+++.++|..++-.-..|.       |-+++-..  .  ...+....
T Consensus       134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~--~~~~~~p~  209 (305)
T PF07433_consen  134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--A--LRLLPAPE  209 (305)
T ss_pred             hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--c--ceeccCCh
Confidence               22466677788888766  5  348889999999999876665433221       33333222  1  11111111


Q ss_pred             CC-CCCCCCceEEEEcCCCCEEEEE--eeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEec
Q 001163          972 GR-TASALADTRVQFHLDQTHLLAV--HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFE 1040 (1134)
Q Consensus       972 ~~-~~~~~~v~~l~fs~dg~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~ 1040 (1134)
                      .. ......+-+++++++|.+++++  ..+.+.+||..+++.+....    -..+..++-.+++ +++|.+.
T Consensus       210 ~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~----l~D~cGva~~~~~-f~~ssG~  276 (305)
T PF07433_consen  210 EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP----LPDACGVAPTDDG-FLVSSGQ  276 (305)
T ss_pred             HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc----cCceeeeeecCCc-eEEeCCC
Confidence            11 0111468999999999998885  67899999999999887776    3466777777676 6665543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.73  E-value=1.7e-06  Score=91.66  Aligned_cols=224  Identities=15%  Similarity=0.153  Sum_probs=140.5

Q ss_pred             CCeEEEEEccCCeEEEEecCC--CCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCC
Q 001163          863 GGKISLFNMMTFKTMTTFMPP--PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLN  940 (1134)
Q Consensus       863 dg~i~lwd~~~~~~~~~~~~~--~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~  940 (1134)
                      +|+|..||..+|+.+......  .....+..+.  ++..+++++.++.+..||..+|+.+.++.. .+.+.... ..++.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~   77 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP--DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG   77 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE--ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEE--eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence            578999999999999887532  2222322332  345677778999999999999998877664 22222212 23455


Q ss_pred             EEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-eeceEEEEeCCCcccceeeccCCC
Q 001163          941 VLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLECLKQFVPREA 1019 (1134)
Q Consensus       941 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h 1019 (1134)
                      .++.++.|+.+..+|..+|+..-..........    ..........++..++++ .++.|..+|..+|+.+........
T Consensus        78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~  153 (238)
T PF13360_consen   78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA----GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP  153 (238)
T ss_dssp             EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC----STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred             ccccccceeeeEecccCCcceeeeecccccccc----ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence            667777888999999988874321111111110    111222333336666665 589999999999999877764221


Q ss_pred             c--c------CEEEEEEccCCCEEEEEecCCc-EEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEE
Q 001163         1020 S--G------PITHATYSCDSQSIYVAFEEGS-VGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALG 1090 (1134)
Q Consensus      1020 ~--~------~v~~~~~s~dg~~l~s~s~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~ 1090 (1134)
                      .  .      .+..-....++ .++.++.++. +.+ |+.+++.+.... ..        .+.++   ... ++..|+.+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~--------~~~~~---~~~-~~~~l~~~  218 (238)
T PF13360_consen  154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-IS--------GIYSL---PSV-DGGTLYVT  218 (238)
T ss_dssp             -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-SS---------ECEC---EEC-CCTEEEEE
T ss_pred             CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-CC--------CccCC---cee-eCCEEEEE
Confidence            1  1      12233333345 7777777775 555 999999664322 11        12221   223 56788888


Q ss_pred             ecCCcEEEEeCCCCCCCcc
Q 001163         1091 LTDGGVYIIEPLEAEGRWG 1109 (1134)
Q Consensus      1091 ~~Dg~v~vW~~~~~~~~~~ 1109 (1134)
                      +.|+.|..||+.+.+..|.
T Consensus       219 ~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  219 SSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             ETTTEEEEEETTTTEEEEE
T ss_pred             eCCCEEEEEECCCCCEEeE
Confidence            8999999999999998885

...

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.72  E-value=6.7e-06  Score=93.93  Aligned_cols=307  Identities=11%  Similarity=0.070  Sum_probs=166.4

Q ss_pred             cEEEEecCCCcEEEEecCCCCceeeecCCCC----------Cee-EEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeE
Q 001163          522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGH----------SST-MMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK  590 (1134)
Q Consensus       522 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~----------~v~-~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~  590 (1134)
                      ..++.++.++.+..+|..+++..........          .+. .+..  ++..++.++.    ++.++.+|.++|+.+
T Consensus        70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~----~g~l~ald~~tG~~~  143 (394)
T PRK11138         70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSE----KGQVYALNAEDGEVA  143 (394)
T ss_pred             CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcC----CCEEEEEECCCCCCc
Confidence            4566666677777777776666655443221          000 0111  3445555543    346999999999988


Q ss_pred             EEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcC--CCcEEEEEECCCcEEE
Q 001163          591 RTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK--EGILLAVSTNDNGIKI  668 (1134)
Q Consensus       591 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp--~~~~l~~~~~dg~i~i  668 (1134)
                      .+...... .......  .+..++.+..+|.|+.+|..+|+.+-............. .-+|  .+..++.++.+|.+..
T Consensus       144 W~~~~~~~-~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~-~~sP~v~~~~v~~~~~~g~v~a  219 (394)
T PRK11138        144 WQTKVAGE-ALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG-ESAPATAFGGAIVGGDNGRVSA  219 (394)
T ss_pred             ccccCCCc-eecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC-CCCCEEECCEEEEEcCCCEEEE
Confidence            87765432 1111122  245677788899999999999999887754311000000 0112  2335667788899988


Q ss_pred             EEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccc
Q 001163          669 LANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAV  748 (1134)
Q Consensus       669 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  748 (1134)
                      ++..++..... .......                                                   +      .  
T Consensus       220 ~d~~~G~~~W~-~~~~~~~---------------------------------------------------~------~--  239 (394)
T PRK11138        220 VLMEQGQLIWQ-QRISQPT---------------------------------------------------G------A--  239 (394)
T ss_pred             EEccCChhhhe-eccccCC---------------------------------------------------C------c--
Confidence            88887732221 1100000                                                   0      0  


Q ss_pred             ccc-ceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCC
Q 001163          749 EKS-RIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQP  827 (1134)
Q Consensus       749 ~~i-~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~  827 (1134)
                      ..+ +++++                  ...++    +  .+..+++++.+|.+..+|....+             .+|..
T Consensus       240 ~~~~~~~~~------------------~~sP~----v--~~~~vy~~~~~g~l~ald~~tG~-------------~~W~~  282 (394)
T PRK11138        240 TEIDRLVDV------------------DTTPV----V--VGGVVYALAYNGNLVALDLRSGQ-------------IVWKR  282 (394)
T ss_pred             cchhccccc------------------CCCcE----E--ECCEEEEEEcCCeEEEEECCCCC-------------EEEee
Confidence            000 00000                  00000    1  12345555566666665543211             23322


Q ss_pred             CCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCC-CCeEEEEEcCCCCcEEEEEeC
Q 001163          828 PSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPP-PAATFLAFHPQDNNIIAIGME  905 (1134)
Q Consensus       828 ~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~~la~g~~  905 (1134)
                      ..+.              ...+..  ++..+..++ +|.+..+|..+++.+....... ....+..+.  + .+|+.++.
T Consensus       283 ~~~~--------------~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~-g~l~v~~~  343 (394)
T PRK11138        283 EYGS--------------VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--N-GYLVVGDS  343 (394)
T ss_pred             cCCC--------------ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--C-CEEEEEeC
Confidence            1110              011122  234444444 8999999999998776543211 223333333  3 46778899


Q ss_pred             CCcEEEEEcccceEEEeccCccCceEE-EEEeeCCCEEEEEeCCCcEEEEEC
Q 001163          906 DSSIQIYNVRVDEVKTKLKGHQKRITG-LAFSNTLNVLVSSGADSQLCVWST  956 (1134)
Q Consensus       906 dg~i~iwd~~~~~~~~~l~~h~~~V~~-l~~s~d~~~l~s~s~Dg~i~iwd~  956 (1134)
                      ||.+++.|..+|+.+...+-....+.+ ..+  .+..|+.++.||.|..++.
T Consensus       344 ~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        344 EGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             CCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence            999999999999988776544333332 222  2457888899999888764

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.72  E-value=1.4e-06  Score=97.88  Aligned_cols=110  Identities=15%  Similarity=0.326  Sum_probs=83.6

Q ss_pred             eEEEEcCCCCeEEEEEeC----CCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001163          360 KSMDFHPVQQILLVVGTN----MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV  435 (1134)
Q Consensus       360 ~~v~fsp~g~~lla~gs~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las  435 (1134)
                      +-..|+|... ++|+++.    .|.|.||- ++|+.....+                    -.-.+++++|+|..-.||.
T Consensus        19 ti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt--------------------~P~hatSLCWHpe~~vLa~   76 (1416)
T KOG3617|consen   19 TISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVT--------------------YPVHATSLCWHPEEFVLAQ   76 (1416)
T ss_pred             cccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccc--------------------cceehhhhccChHHHHHhh
Confidence            4457999888 5676653    47788875 4555332111                    1224567999999999999


Q ss_pred             EeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCC
Q 001163          436 AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT  496 (1134)
Q Consensus       436 ~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~  496 (1134)
                      |-.-|.+.+|...+.+.-.   ....|..+|..+.||++|.  .++|+..-|.|.+|....
T Consensus        77 gwe~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   77 GWEMGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             ccccceeEEEecCCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEeee
Confidence            9999999999988755322   4567999999999999999  899999999999998763

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.70  E-value=3.3e-07  Score=90.93  Aligned_cols=249  Identities=15%  Similarity=0.238  Sum_probs=162.3

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCc--eeeeeeeeecCC------------CCEEEEEEecCCCceEEEE
Q 001163          417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGD--ELRNHLEIEAHV------------GSVNDLAFSYPNKQLSVVT  482 (1134)
Q Consensus       417 h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~--~~~~~~~l~~h~------------~~V~~v~~s~~~~~~~l~s  482 (1134)
                      ....|+++.|...|.|||+|...|.|.++.-....  ..+-+..+++|.            ..|..+.|..++..-.++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            45689999999999999999999999999765432  122233456665            3578899988776556777


Q ss_pred             EeCCCeEEEEECCCCce-------------------e-----------------------EEe-cCCCcCEEEEeccccC
Q 001163          483 CGEDRVIKVWDAVTGTK-------------------Q-----------------------YIF-EGHESPVYSICPHHKE  519 (1134)
Q Consensus       483 ~s~d~~i~iwd~~~~~~-------------------~-----------------------~~~-~~h~~~v~~~~~~~~~  519 (1134)
                      .+.|++|++|.+.....                   +                       +.. ..|..-|+++.+..  
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns--  182 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS--  182 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC--
Confidence            78899999998754310                   0                       001 24666677777643  


Q ss_pred             CccEEEEecCCCcEEEEecCCCCceee---ecCCCC-----CeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeE-
Q 001163          520 NIQFIFSTATDGKIKAWLYDNLGSRVD---YDAPGH-----SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK-  590 (1134)
Q Consensus       520 ~~~~l~s~s~dg~i~vwd~~~~~~~~~---~~~~~~-----~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~-  590 (1134)
                      |...++++ .|=.|.+|+++.......   +..+..     -|++..|+|....++.-+.   ..+.|++-|++...+. 
T Consensus       183 D~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs---SkG~Ikl~DlRq~alcd  258 (460)
T COG5170         183 DKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS---SKGEIKLNDLRQSALCD  258 (460)
T ss_pred             chheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec---CCCcEEehhhhhhhhcc
Confidence            43556554 578899999876543332   222322     4778889986554433332   2445999998743211 


Q ss_pred             ---E----EecCCC-------CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-ceeEEEecCCC----------CCCc
Q 001163          591 ---R----TYHGLG-------KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV-NLLASIDADGG----------LQAS  645 (1134)
Q Consensus       591 ---~----~~~~~~-------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~----------~~~v  645 (1134)
                         .    .+.+..       -..|..+.|+++|+++++-+. -+|++||.+.. .++.++..|..          ...|
T Consensus       259 n~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDai  337 (460)
T COG5170         259 NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAI  337 (460)
T ss_pred             CchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccce
Confidence               0    111110       125677899999988887654 68999999754 46666643321          1122


Q ss_pred             ---ceEEEcCCCcEEEEEECCCcEEEEEcc
Q 001163          646 ---PCIRFNKEGILLAVSTNDNGIKILANA  672 (1134)
Q Consensus       646 ---~~v~~sp~~~~l~~~~~dg~i~iw~~~  672 (1134)
                         ..+.|+-|...+.+|+..+..-++-..
T Consensus       338 fdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         338 FDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             eeeEEEEecCCcccccccccccceeeeccc
Confidence               357888888999999998888887643

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.70  E-value=2e-06  Score=84.07  Aligned_cols=149  Identities=9%  Similarity=-0.007  Sum_probs=107.7

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCce
Q 001163          420 SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK  499 (1134)
Q Consensus       420 ~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~  499 (1134)
                      .+.++++|+|++++++.+....|..|.+...............++.=.+..|+..+.  .+|++..||++.|||++.-..
T Consensus       160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~t  237 (344)
T KOG4532|consen  160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMAT  237 (344)
T ss_pred             ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEeccccc
Confidence            388999999999999999999999999976554332223444555567889998877  799999999999999987544


Q ss_pred             eEE-----ecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCC--------CCeeEEEECcCCCEE
Q 001163          500 QYI-----FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG--------HSSTMMAYSADGARL  566 (1134)
Q Consensus       500 ~~~-----~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l  566 (1134)
                      ...     -..|.+.+..+.|++.+.-++|+..-.-+.+.+.|+++......+....        ..|....|+.++..+
T Consensus       238 pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~  317 (344)
T KOG4532|consen  238 PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESN  317 (344)
T ss_pred             chhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccc
Confidence            332     2358899999999866555677777777889999998866444332211        125556666666555


Q ss_pred             EEEe
Q 001163          567 FSCG  570 (1134)
Q Consensus       567 ~~~~  570 (1134)
                      .+..
T Consensus       318 ~v~~  321 (344)
T KOG4532|consen  318 DVKN  321 (344)
T ss_pred             cccc
Confidence            5443

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.70  E-value=3.3e-06  Score=82.51  Aligned_cols=239  Identities=13%  Similarity=0.059  Sum_probs=153.3

Q ss_pred             CeEEEee-CCeEEEEEccCCeEEE-EecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCc--eE
Q 001163          856 SYVMSAS-GGKISLFNMMTFKTMT-TFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKR--IT  931 (1134)
Q Consensus       856 ~~la~~s-dg~i~lwd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~--V~  931 (1134)
                      -+||.|+ .|...+|...+.+... ....+...|+-+.=.-+...-+..++.|.++++.++..+...  +..|...  +.
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~--~~~h~~~~~~n  162 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK--FAVHNQNLTQN  162 (344)
T ss_pred             cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc--ceeecccccee
Confidence            4677775 7999999998655433 333344433322111112235667788999999988754322  2223332  78


Q ss_pred             EEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCccc
Q 001163          932 GLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLEC 1010 (1134)
Q Consensus       932 ~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~~~ 1010 (1134)
                      ++++++|++++++.++...|..|.++......   ..+......  +.-.+..|+.....+|+ ..||++.|||+.....
T Consensus       163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~---~~~~~a~t~--D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t  237 (344)
T KOG4532|consen  163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYI---ENIYEAPTS--DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT  237 (344)
T ss_pred             eeEEcCCCceEEEecCCCcceEEEeCCcccee---eeeEecccC--CCceeeeeccCcceEEEEecCCcEEEEEeccccc
Confidence            89999999999999999999999998743222   222222221  34577889998888888 5999999999987654


Q ss_pred             ceeec---cCCCccCEEEEEEccCCCE--EEEEecCCcEEEeecCCCcceeecCCCcccCCCCC-CCceeEEEEecCCCC
Q 001163         1011 LKQFV---PREASGPITHATYSCDSQS--IYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPS-LRVYPLVIAGNPTDP 1084 (1134)
Q Consensus      1011 ~~~~~---~~~h~~~v~~~~~s~dg~~--l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~p~~~ 1084 (1134)
                      .....   ...|.+.+..+.||+-|..  |+..-.-+.+.+-|+.++.-..++.+..-.-..|. ..++..  .|+- ++
T Consensus       238 pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt--~f~~-~n  314 (344)
T KOG4532|consen  238 PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGT--NFNN-EN  314 (344)
T ss_pred             chhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccc--cccC-CC
Confidence            33222   2358999999999987754  44444558899999999887665553322211233 336655  4444 45


Q ss_pred             CEEEEEecCCcEEEEeCCCCC
Q 001163         1085 NQFALGLTDGGVYIIEPLEAE 1105 (1134)
Q Consensus      1085 ~~l~s~~~Dg~v~vW~~~~~~ 1105 (1134)
                      .-+.+.+.+ .+.-|++.+..
T Consensus       315 ~s~~v~~e~-~~ae~ni~srs  334 (344)
T KOG4532|consen  315 ESNDVKNEL-QGAEYNILSRS  334 (344)
T ss_pred             cccccccch-hhheeeccccc
Confidence            555555554 36777776544

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.69  E-value=2.6e-07  Score=91.70  Aligned_cols=118  Identities=15%  Similarity=0.278  Sum_probs=83.0

Q ss_pred             CCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCe---EEEEecCCC-----CCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 001163          841 NPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFK---TMTTFMPPP-----PAATFLAFHPQDNNIIAIGMEDSSIQIY  912 (1134)
Q Consensus       841 ~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~---~~~~~~~~~-----~~v~~l~~sp~~~~~la~g~~dg~i~iw  912 (1134)
                      .|...+.++.|..|...++++.|=.|-+|+++--.   .+..+++|.     .-|++..|+|.....+...+..|.|++-
T Consensus       170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~  249 (460)
T COG5170         170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN  249 (460)
T ss_pred             cceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence            48888999999999999999999999999985322   233455554     2488999999777888889999999999


Q ss_pred             EcccceE------EE--e--------ccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCC
Q 001163          913 NVRVDEV------KT--K--------LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGW  959 (1134)
Q Consensus       913 d~~~~~~------~~--~--------l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~  959 (1134)
                      |++...+      +.  .        +.+-...|..+.|+++|+++++-+. -+|+|||+...
T Consensus       250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~  311 (460)
T COG5170         250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA  311 (460)
T ss_pred             hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence            9873211      00  0        1112245666777777777766543 35777776653

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.69  E-value=1.8e-05  Score=79.21  Aligned_cols=246  Identities=10%  Similarity=0.090  Sum_probs=135.0

Q ss_pred             EEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCC
Q 001163          361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKH  440 (1134)
Q Consensus       361 ~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg  440 (1134)
                      .++.++||+ +||+ -.|..|.|=.....-.....+..              +.+...-.=.-++||||+.+||.+...|
T Consensus         2 ~~~~~~~Gk-~lAi-~qd~~iEiRsa~Ddf~si~~kcq--------------VpkD~~PQWRkl~WSpD~tlLa~a~S~G   65 (282)
T PF15492_consen    2 HLALSSDGK-LLAI-LQDQCIEIRSAKDDFSSIIGKCQ--------------VPKDPNPQWRKLAWSPDCTLLAYAESTG   65 (282)
T ss_pred             ceeecCCCc-EEEE-EeccEEEEEeccCCchheeEEEe--------------cCCCCCchheEEEECCCCcEEEEEcCCC
Confidence            467788998 4443 45667777665543221111111              1222333456799999999999999999


Q ss_pred             EEEEEEccCCceeee--eeeee-cCCCCEEEEEEecCC-----CceEEEEEeCCCeEEEEECCC-----CceeEEec--C
Q 001163          441 IVHLYTYHGGDELRN--HLEIE-AHVGSVNDLAFSYPN-----KQLSVVTCGEDRVIKVWDAVT-----GTKQYIFE--G  505 (1134)
Q Consensus       441 ~v~iwd~~~~~~~~~--~~~l~-~h~~~V~~v~~s~~~-----~~~~l~s~s~d~~i~iwd~~~-----~~~~~~~~--~  505 (1134)
                      +|+++|+........  ...+. .-...|..+.|.+-.     .. .|+.-..+|.++-+-+..     .+..++|.  .
T Consensus        66 ~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~-ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~  144 (282)
T PF15492_consen   66 TIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSY-ELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSS  144 (282)
T ss_pred             eEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccce-eEEEEeccceeeeEEEEcccCCcceeeEEEEecc
Confidence            999999986543210  00011 123567777786532     11 355556677776665432     23334433  2


Q ss_pred             -CCcCEEEEeccccCCccEEEEecC-CCcEEEEecCCCCceeeecCCCCCeeEEEE---CcCCCEEEEEecCCCC--CeE
Q 001163          506 -HESPVYSICPHHKENIQFIFSTAT-DGKIKAWLYDNLGSRVDYDAPGHSSTMMAY---SADGARLFSCGTNKEG--ESY  578 (1134)
Q Consensus       506 -h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~---s~~~~~l~~~~~~~~~--~~~  578 (1134)
                       +...|.++.+++..  ++|+.|+. ...-..+           ......+++-.+   +|..+.+. ...+...  ...
T Consensus       145 ~yp~Gi~~~vy~p~h--~LLlVgG~~~~~~~~s-----------~a~~~GLtaWRiL~~~Pyyk~v~-~~~~~~~~~~~~  210 (282)
T PF15492_consen  145 HYPHGINSAVYHPKH--RLLLVGGCEQNQDGMS-----------KASSCGLTAWRILSDSPYYKQVT-SSEDDITASSKR  210 (282)
T ss_pred             cCCCceeEEEEcCCC--CEEEEeccCCCCCccc-----------cccccCceEEEEcCCCCcEEEcc-ccCccccccccc
Confidence             46789999998766  56665553 2210000           011112222222   12221111 1111000  001


Q ss_pred             EEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEec
Q 001163          579 LVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA  638 (1134)
Q Consensus       579 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  638 (1134)
                      ..+|.+-+.+... ..+.....|..+..+|||..|++...+|.|.+|++.+-++......
T Consensus       211 ~~~~~~~~~~~fs-~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~  269 (282)
T PF15492_consen  211 RGLLRIPSFKFFS-RQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ  269 (282)
T ss_pred             cceeeccceeeee-ccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence            2233333222211 1233444799999999999999999999999999998777766654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.69  E-value=2.8e-05  Score=80.70  Aligned_cols=208  Identities=19%  Similarity=0.158  Sum_probs=139.1

Q ss_pred             CeeEEEEcC-CCCeEEEee-CCe-EEEEEccCCeEEEEecCCCCCe--EEEEEcCCCCcEEEEEeC-----CCcEEEEEc
Q 001163          845 AVPCFALSK-NDSYVMSAS-GGK-ISLFNMMTFKTMTTFMPPPPAA--TFLAFHPQDNNIIAIGME-----DSSIQIYNV  914 (1134)
Q Consensus       845 ~v~~v~~s~-dg~~la~~s-dg~-i~lwd~~~~~~~~~~~~~~~~v--~~l~~sp~~~~~la~g~~-----dg~i~iwd~  914 (1134)
                      ....++.+| ++..++.+. -|+ ..+||..+++....+....+.-  ---+||+ ||++|++.-+     .|.|-|||.
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~   84 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDA   84 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEEC
Confidence            345788888 455566666 454 8999999999998887655443  2478999 8888887643     479999999


Q ss_pred             c-cceEEEeccCccCceEEEEEeeCCCEEEEEeC------------------CCcEEEEECCCCccccceeeeecCCCCC
Q 001163          915 R-VDEVKTKLKGHQKRITGLAFSNTLNVLVSSGA------------------DSQLCVWSTDGWEKQASKFLTIPNGRTA  975 (1134)
Q Consensus       915 ~-~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~------------------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~  975 (1134)
                      . +.+.+..+..|.-.--.+.+.|||+.|+.+-.                  +-.+..-|..+|+......+  +.... 
T Consensus        85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~L--p~~~~-  161 (305)
T PF07433_consen   85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVEL--PPDLH-  161 (305)
T ss_pred             cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeec--Ccccc-
Confidence            9 66778888887766677889999988776521                  22344455555553322111  11111 


Q ss_pred             CCCCceEEEEcCCCCEEEEEe-ec-------eEEEEeCCCcccceeecc-----CCCccCEEEEEEccCCCEEEEEe-cC
Q 001163          976 SALADTRVQFHLDQTHLLAVH-ET-------QIAIYEAPKLECLKQFVP-----REASGPITHATYSCDSQSIYVAF-EE 1041 (1134)
Q Consensus       976 ~~~~v~~l~fs~dg~~l~~~~-d~-------~i~iwd~~~~~~~~~~~~-----~~h~~~v~~~~~s~dg~~l~s~s-~D 1041 (1134)
                       ..+++.+++.+||..++... .+       -|.+++...  .+..+..     ..-..-+-+|+++.+|.++++.+ .-
T Consensus       162 -~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG  238 (305)
T PF07433_consen  162 -QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG  238 (305)
T ss_pred             -ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC
Confidence             14699999999998777631 11       144444332  2222211     11246789999999999876555 55


Q ss_pred             CcEEEeecCCCcceeecC
Q 001163         1042 GSVGVLTASTLRLRCRIN 1059 (1134)
Q Consensus      1042 g~i~vwd~~~~~~~~~~~ 1059 (1134)
                      +.+.+||..+++++....
T Consensus       239 g~~~~~d~~tg~~~~~~~  256 (305)
T PF07433_consen  239 GRVAVWDAATGRLLGSVP  256 (305)
T ss_pred             CEEEEEECCCCCEeeccc
Confidence            889999999999886655

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.69  E-value=3.7e-07  Score=100.93  Aligned_cols=296  Identities=12%  Similarity=0.197  Sum_probs=187.2

Q ss_pred             EEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCC-
Q 001163          351 MTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD-  429 (1134)
Q Consensus       351 ~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-  429 (1134)
                      ..++-.+.+.++..+|.|+-+ |.++.-| +.+-|+...-....     |            +..--.-.|..+.|||. 
T Consensus        19 lsl~v~~~~~a~si~p~grdi-~lAsr~g-l~i~dld~p~~ppr-----~------------l~h~tpw~vad~qws~h~   79 (1081)
T KOG0309|consen   19 LSLKVDGGFNAVSINPSGRDI-VLASRQG-LYIIDLDDPFTPPR-----W------------LHHITPWQVADVQWSPHP   79 (1081)
T ss_pred             eEEEecCcccceeeccccchh-hhhhhcC-eEEEeccCCCCCce-----e------------eeccCcchhcceecccCC
Confidence            346678899999999999975 5555544 55666654321110     0            00111235667788874 


Q ss_pred             -CCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCc-eeEEecCCC
Q 001163          430 -GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-KQYIFEGHE  507 (1134)
Q Consensus       430 -~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~h~  507 (1134)
                       -.+-++......-.+|++.....-.....+.||...|+.+.|.|.... .+++++.|..+..||+++.. .+..+..-.
T Consensus        80 a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd-Vlatcsvdt~vh~wd~rSp~~p~ys~~~w~  158 (1081)
T KOG0309|consen   80 AKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD-VLATCSVDTYVHAWDMRSPHRPFYSTSSWR  158 (1081)
T ss_pred             CCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc-ceeeccccccceeeeccCCCcceeeeeccc
Confidence             334444444555789998765444444568899999999999998887 79999999999999998764 455555444


Q ss_pred             cCEEEEeccccCCccEEEEecCCCcEEEEecCCCCce-eeecCCCCCeeEEEECcC-CCEEEEEecCCCCCeEEEEEeCC
Q 001163          508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR-VDYDAPGHSSTMMAYSAD-GARLFSCGTNKEGESYLVEWNES  585 (1134)
Q Consensus       508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~i~~wd~~  585 (1134)
                      ..-..+.|+...  ..+.+.+..+.|++||.+.+... ..+..+...|..+.|..- ...+.+++.    +++|..||..
T Consensus       159 s~asqVkwnyk~--p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~----d~tvkfw~y~  232 (1081)
T KOG0309|consen  159 SAASQVKWNYKD--PNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSN----DGTVKFWDYS  232 (1081)
T ss_pred             ccCceeeecccC--cchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCC----CCceeeeccc
Confidence            555667876544  33555566788999999876544 445566667777777653 234555543    5569999987


Q ss_pred             CCeeEEEecCCCCCceEEEEEcCCCCEEEEEe--CCCeEEE---------EEcC-CCceeEEEecCCCCCCcceEEEcCC
Q 001163          586 EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG--DEFMIKF---------WDMD-NVNLLASIDADGGLQASPCIRFNKE  653 (1134)
Q Consensus       586 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i---------wd~~-~~~~~~~~~~~~~~~~v~~v~~sp~  653 (1134)
                      ............+.++..-++.|-|.-.++--  .+..+.+         |+.. ..+++..+.+|  .+.|....|-..
T Consensus       233 kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH--~D~V~eFlWR~r  310 (1081)
T KOG0309|consen  233 KSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGH--DDVVLEFLWRKR  310 (1081)
T ss_pred             ccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCc--chHHHHHhhhhc
Confidence            65433333333334566666666554333211  1123333         3332 23567777755  556655555332


Q ss_pred             ----------CcEEEEEECCCcEEEEEccCC
Q 001163          654 ----------GILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       654 ----------~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                                .-.|++-+.|.++++|-+.+.
T Consensus       311 ~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~  341 (1081)
T KOG0309|consen  311 KECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ  341 (1081)
T ss_pred             ccccCCCCccceeEEEeecCCceEeeeccHH
Confidence                      237899999999999988653

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.66  E-value=2.9e-05  Score=88.70  Aligned_cols=189  Identities=15%  Similarity=0.074  Sum_probs=113.4

Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEecCCCc-CE-E-----EEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCC
Q 001163          479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHES-PV-Y-----SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG  551 (1134)
Q Consensus       479 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~-~v-~-----~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~  551 (1134)
                      .++.++.++.+.-+|..+|+.+........ .+ .     .+.-.+.-.+..++.++.++.+..+|.++++.........
T Consensus        71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~  150 (394)
T PRK11138         71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG  150 (394)
T ss_pred             EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence            477778889999999999998876643220 00 0     0000011123567788889999999999888887766543


Q ss_pred             CCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCc----eEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 001163          552 HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS----VGVVQFDTTKNRFLAAGDEFMIKFWDM  627 (1134)
Q Consensus       552 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg~i~iwd~  627 (1134)
                      ....+..+. ++ .++.+..    ++.+..+|..+|+.+..+.......    ..+...  .+..++.++.+|.+..+|.
T Consensus       151 ~~~ssP~v~-~~-~v~v~~~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~  222 (394)
T PRK11138        151 EALSRPVVS-DG-LVLVHTS----NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM  222 (394)
T ss_pred             ceecCCEEE-CC-EEEEECC----CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence            211111121 33 4444432    4469999999999988776432100    011111  1346777888999999999


Q ss_pred             CCCceeEEEecCCCC--C---CcceEEEcC--CCcEEEEEECCCcEEEEEccCCc
Q 001163          628 DNVNLLASIDADGGL--Q---ASPCIRFNK--EGILLAVSTNDNGIKILANADGI  675 (1134)
Q Consensus       628 ~~~~~~~~~~~~~~~--~---~v~~v~~sp--~~~~l~~~~~dg~i~iw~~~~~~  675 (1134)
                      .+|+.+.........  .   ....+..+|  .+..+++++.+|.+..+|..++.
T Consensus       223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~  277 (394)
T PRK11138        223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ  277 (394)
T ss_pred             cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC
Confidence            999876654321110  0   011111223  34567777788999998888773

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.64  E-value=3.1e-05  Score=82.11  Aligned_cols=219  Identities=19%  Similarity=0.203  Sum_probs=138.9

Q ss_pred             EEEEcC-CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEe-cCCCceEEEEEeCCCeEEEEECCCCcee
Q 001163          423 RVMWSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFS-YPNKQLSVVTCGEDRVIKVWDAVTGTKQ  500 (1134)
Q Consensus       423 ~l~~sp-d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s-~~~~~~~l~s~s~d~~i~iwd~~~~~~~  500 (1134)
                      +++|.+ ++.++++--..+.|..|+..++....    +....  ...+++. +++.   ++.+..++ +.++|..+++..
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~----~~~~~--~~G~~~~~~~g~---l~v~~~~~-~~~~d~~~g~~~   73 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV----IDLPG--PNGMAFDRPDGR---LYVADSGG-IAVVDPDTGKVT   73 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE----EESSS--EEEEEEECTTSE---EEEEETTC-EEEEETTTTEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE----EecCC--CceEEEEccCCE---EEEEEcCc-eEEEecCCCcEE
Confidence            578888 77777777789999999999876422    22122  6777887 6654   55555544 455599888654


Q ss_pred             EEecC-----CCcCEEEEeccccCCccEEEEecCC--------CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEE
Q 001163          501 YIFEG-----HESPVYSICPHHKENIQFIFSTATD--------GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLF  567 (1134)
Q Consensus       501 ~~~~~-----h~~~v~~~~~~~~~~~~~l~s~s~d--------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  567 (1134)
                      .....     .....+.+++.  ++|++.++....        |.|..++..  .........-.....++|+|+++.|+
T Consensus        74 ~~~~~~~~~~~~~~~ND~~vd--~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~~~~~~~pNGi~~s~dg~~ly  149 (246)
T PF08450_consen   74 VLADLPDGGVPFNRPNDVAVD--PDGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVVADGLGFPNGIAFSPDGKTLY  149 (246)
T ss_dssp             EEEEEETTCSCTEEEEEEEE---TTS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEEEEEESSEEEEEEETTSSEEE
T ss_pred             EEeeccCCCcccCCCceEEEc--CCCCEEEEecCCCccccccccceEEECCC--CeEEEEecCcccccceEECCcchhee
Confidence            43322     34557778875  455766665433        446556555  22222222234567899999999887


Q ss_pred             EEecCCCCCeEEEEEeCCC--Cee--EEEec-CCCC-CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCC
Q 001163          568 SCGTNKEGESYLVEWNESE--GAV--KRTYH-GLGK-RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGG  641 (1134)
Q Consensus       568 ~~~~~~~~~~~i~~wd~~~--~~~--~~~~~-~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  641 (1134)
                      .+..   ....|..+++..  +..  ...+. .... .....+++..+|+..++....+.|.+++.+ |+.+..+...  
T Consensus       150 v~ds---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p--  223 (246)
T PF08450_consen  150 VADS---FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP--  223 (246)
T ss_dssp             EEET---TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S--
T ss_pred             eccc---ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC--
Confidence            6542   244588888753  211  22221 1111 147789999999888887789999999988 8888888765  


Q ss_pred             CCCcceEEEc-CCCcEEEEEE
Q 001163          642 LQASPCIRFN-KEGILLAVST  661 (1134)
Q Consensus       642 ~~~v~~v~~s-p~~~~l~~~~  661 (1134)
                      ...+++++|. ++.+.|++.+
T Consensus       224 ~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  224 VPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             SSSEEEEEEESTTSSEEEEEE
T ss_pred             CCCEEEEEEECCCCCEEEEEe
Confidence            3478899994 6666655443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.57  E-value=1.7e-07  Score=94.56  Aligned_cols=164  Identities=15%  Similarity=0.086  Sum_probs=123.3

Q ss_pred             EEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEE
Q 001163          363 DFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIV  442 (1134)
Q Consensus       363 ~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v  442 (1134)
                      +||-+-.-.-++.+.+-.|-+-|+++|....                    + .-.+.|.++.|.-.++++..|..+|.|
T Consensus       218 awSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f-~sksDVfAlQf~~s~nLv~~GcRngeI  276 (425)
T KOG2695|consen  218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------F-QSKSDVFALQFAGSDNLVFNGCRNGEI  276 (425)
T ss_pred             hhhhccceeeecccccceeEEEEeecccccc--------------------c-ccchhHHHHHhcccCCeeEecccCCcE
Confidence            6664322122344556678999999886432                    2 256789999999999999999999999


Q ss_pred             EEEEccCCce--eeeeeeeecCCCCEEEEEEec-CCCceEEEEEeCCCeEEEEECCCCce---eEEecCCCcCEEEEecc
Q 001163          443 HLYTYHGGDE--LRNHLEIEAHVGSVNDLAFSY-PNKQLSVVTCGEDRVIKVWDAVTGTK---QYIFEGHESPVYSICPH  516 (1134)
Q Consensus       443 ~iwd~~~~~~--~~~~~~l~~h~~~V~~v~~s~-~~~~~~l~s~s~d~~i~iwd~~~~~~---~~~~~~h~~~v~~~~~~  516 (1134)
                      ...|++.+..  ..+.. ---|...|+++.... +++  +|++.+.+|.|++||.+.-++   +.++.||.+.-.-+-++
T Consensus       277 ~~iDLR~rnqG~~~~a~-rlyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~  353 (425)
T KOG2695|consen  277 FVIDLRCRNQGNGWCAQ-RLYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAH  353 (425)
T ss_pred             EEEEeeecccCCCcceE-EEEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeecccccccccccc
Confidence            9999986521  11111 223999999998877 555  799999999999999987776   88999997766666666


Q ss_pred             ccCCccEEEEecCCCcEEEEecCCCCceeeecCC
Q 001163          517 HKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP  550 (1134)
Q Consensus       517 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  550 (1134)
                      -.+....+++++.|...|+|.++.+.....+...
T Consensus       354 v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  354 VKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP  387 (425)
T ss_pred             cccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence            6666678999999999999999977666555443

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.56  E-value=1.9e-06  Score=83.84  Aligned_cols=209  Identities=14%  Similarity=0.231  Sum_probs=126.6

Q ss_pred             eeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeC
Q 001163          359 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS  438 (1134)
Q Consensus       359 V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~  438 (1134)
                      |+.+.|+.+-  .++++..++.+......++.+..     .|+-.....++  ..+..|+++-.+=+.+--++.+++++.
T Consensus        39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~~i~~~--~~~a~~sep~p~~~~s~~~t~V~~~~~  109 (319)
T KOG4714|consen   39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCIS-----LWERDDGIDPF--KVLAKNSEIDPNDACTMTDNRVCIGYA  109 (319)
T ss_pred             EEEeechhhh--eeecccchhheeeeccceEEEec-----hhhcccCcCce--eeeeccCCCCCcccccccCCceEecCC
Confidence            6677777654  56888888877777766554332     22222111111  123345555555555667889999999


Q ss_pred             CCEEEEEEccCCceeeeeeeee-cCCCCEEEEEEecCCCceEEEEEe-----CCCeEEEEECCCCceeEEecCCCcCEEE
Q 001163          439 KHIVHLYTYHGGDELRNHLEIE-AHVGSVNDLAFSYPNKQLSVVTCG-----EDRVIKVWDAVTGTKQYIFEGHESPVYS  512 (1134)
Q Consensus       439 dg~v~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~~~~~~~l~s~s-----~d~~i~iwd~~~~~~~~~~~~h~~~v~~  512 (1134)
                      ||.+.+.+.+.-..+.  .... .|.+. .+.+....+.  ++.++.     .-+..+.|+++..+.+..-......|.+
T Consensus       110 dg~~~v~s~~~~~~~~--~~i~~~~~~~-as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~  184 (319)
T KOG4714|consen  110 DGSLAVFSTDKDLALM--SRIPSIHSGS-ASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA  184 (319)
T ss_pred             CceEEEEechHHHhhh--hhcccccccc-cccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence            9999999987622111  1111 12221 1223333444  333332     1224456665543332221222334889


Q ss_pred             EeccccCCccEEEEecCCCcEEEEecCCCCcee-eecCCCCCeeEEEECc-CCCEEEEEecCCCCCeEEEEEeCCC
Q 001163          513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV-DYDAPGHSSTMMAYSA-DGARLFSCGTNKEGESYLVEWNESE  586 (1134)
Q Consensus       513 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~  586 (1134)
                      ++-+|... +++++|+.||.+-+||.+...... .+..|..++..+-|+| ++..|++++.+++    +.-||..+
T Consensus       185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs----lw~wdas~  255 (319)
T KOG4714|consen  185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS----LWHWDAST  255 (319)
T ss_pred             hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCc----EEEEcCCC
Confidence            99888765 788999999999999998764333 3566778999999998 5678999887654    99999764

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.55  E-value=0.00016  Score=76.61  Aligned_cols=220  Identities=17%  Similarity=0.145  Sum_probs=142.7

Q ss_pred             EEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc-CCCCEEEEEeCC
Q 001163          361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS-PDGTLFGVAYSK  439 (1134)
Q Consensus       361 ~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-pd~~~las~s~d  439 (1134)
                      ++.|.+....|+++.-..+.|..|+..+++....                    . . .....+++. +++.+ +.+...
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~--------------------~-~-~~~~G~~~~~~~g~l-~v~~~~   60 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI--------------------D-L-PGPNGMAFDRPDGRL-YVADSG   60 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--------------------E-S-SSEEEEEEECTTSEE-EEEETT
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE--------------------e-c-CCCceEEEEccCCEE-EEEEcC
Confidence            6789985555878887889999999988865321                    1 1 127778888 56554 444455


Q ss_pred             CEEEEEEccCCceeeeeeeee--c-CCCCEEEEEEecCCCceEEEEEeCC--------CeEEEEECCCCceeEEecCCCc
Q 001163          440 HIVHLYTYHGGDELRNHLEIE--A-HVGSVNDLAFSYPNKQLSVVTCGED--------RVIKVWDAVTGTKQYIFEGHES  508 (1134)
Q Consensus       440 g~v~iwd~~~~~~~~~~~~l~--~-h~~~V~~v~~s~~~~~~~l~s~s~d--------~~i~iwd~~~~~~~~~~~~h~~  508 (1134)
                      + +.++|..+++. .......  . .....+.+++.++|.  +.++....        +.|..++.. ++...... .-.
T Consensus        61 ~-~~~~d~~~g~~-~~~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~  134 (246)
T PF08450_consen   61 G-IAVVDPDTGKV-TVLADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLG  134 (246)
T ss_dssp             C-EEEEETTTTEE-EEEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EES
T ss_pred             c-eEEEecCCCcE-EEEeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEEEec-Ccc
Confidence            5 55669988864 3333332  2 345688999999998  56665543        457777766 55443333 345


Q ss_pred             CEEEEeccccCCccEE-EEecCCCcEEEEecCCCCc-----eeeecCCCC--CeeEEEECcCCCEEEEEecCCCCCeEEE
Q 001163          509 PVYSICPHHKENIQFI-FSTATDGKIKAWLYDNLGS-----RVDYDAPGH--SSTMMAYSADGARLFSCGTNKEGESYLV  580 (1134)
Q Consensus       509 ~v~~~~~~~~~~~~~l-~s~s~dg~i~vwd~~~~~~-----~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~~~~i~  580 (1134)
                      ..+.|+|+++.  +.| ++-+..+.|..+++.....     .........  ..-.+++..+|+..++...    ...|.
T Consensus       135 ~pNGi~~s~dg--~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~----~~~I~  208 (246)
T PF08450_consen  135 FPNGIAFSPDG--KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG----GGRIV  208 (246)
T ss_dssp             SEEEEEEETTS--SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET----TTEEE
T ss_pred             cccceEECCcc--hheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC----CCEEE
Confidence            57889987654  544 5777888899999875443     111222222  3678999999987776542    33599


Q ss_pred             EEeCCCCeeEEEecCCCCCceEEEEE-cCCCCEEEEEe
Q 001163          581 EWNESEGAVKRTYHGLGKRSVGVVQF-DTTKNRFLAAG  617 (1134)
Q Consensus       581 ~wd~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~  617 (1134)
                      ++|.. |+.+..+..... .+++++| .++.+.|+..+
T Consensus       209 ~~~p~-G~~~~~i~~p~~-~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  209 VFDPD-GKLLREIELPVP-RPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEETT-SCEEEEEE-SSS-SEEEEEEESTTSSEEEEEE
T ss_pred             EECCC-ccEEEEEcCCCC-CEEEEEEECCCCCEEEEEe
Confidence            99988 888888877644 7889999 46666666554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.54  E-value=0.00013  Score=71.52  Aligned_cols=118  Identities=14%  Similarity=0.071  Sum_probs=84.6

Q ss_pred             EEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCE
Q 001163          362 MDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHI  441 (1134)
Q Consensus       362 v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~  441 (1134)
                      +..-+|.+.+++.|+..+.+.--|..+|+..-.       .             -....|-+-+.- -|++++.|...|.
T Consensus        16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We-------~-------------ilg~RiE~sa~v-vgdfVV~GCy~g~   74 (354)
T KOG4649|consen   16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWE-------A-------------ILGVRIECSAIV-VGDFVVLGCYSGG   74 (354)
T ss_pred             EEEecCCceEEEEecCCceEEEecCCCCcEEee-------h-------------hhCceeeeeeEE-ECCEEEEEEccCc
Confidence            344456677889999999999999999986532       1             112233332222 5788999999999


Q ss_pred             EEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecC
Q 001163          442 VHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG  505 (1134)
Q Consensus       442 v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  505 (1134)
                      +++-+.++|+....+..+..-.  + .....+++.  ++..|+.|++.+..|..+..+++..+-
T Consensus        75 lYfl~~~tGs~~w~f~~~~~vk--~-~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskc  133 (354)
T KOG4649|consen   75 LYFLCVKTGSQIWNFVILETVK--V-RAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKC  133 (354)
T ss_pred             EEEEEecchhheeeeeehhhhc--c-ceEEcCCCc--eEEEecCCCcEEEecccccceEEeccc
Confidence            9999999997766443332211  1 223456777  899999999999999999999988653

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.54  E-value=4.7e-05  Score=79.95  Aligned_cols=205  Identities=15%  Similarity=0.181  Sum_probs=129.8

Q ss_pred             EEEEcCCCCeEEEee---CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcc-cceEEEe-
Q 001163          848 CFALSKNDSYVMSAS---GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVR-VDEVKTK-  922 (1134)
Q Consensus       848 ~v~~s~dg~~la~~s---dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~-~~~~~~~-  922 (1134)
                      .+++|.||+++.+..   .-+|.|-|+...+.+.++..  ..+..+--+  +++-+.+-+.||.+.-..+. .|+...+ 
T Consensus        99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~--PGC~~iyP~--~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~  174 (342)
T PF06433_consen   99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT--PGCWLIYPS--GNRGFSMLCGDGSLLTVTLDADGKEAQKS  174 (342)
T ss_dssp             GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG--TSEEEEEEE--ETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred             ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC--CCEEEEEec--CCCceEEEecCCceEEEEECCCCCEeEee
Confidence            457778888887775   35689999999998888753  233333323  33457788889999999887 4554322 


Q ss_pred             ---ccCccCceE-EEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCC---CC-CCCCceEEEEcCCCCEEEE
Q 001163          923 ---LKGHQKRIT-GLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGR---TA-SALADTRVQFHLDQTHLLA  994 (1134)
Q Consensus       923 ---l~~h~~~V~-~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~---~~-~~~~v~~l~fs~dg~~l~~  994 (1134)
                         |..-.+++. .-+++..+..++-.+.+|.|+--|+.................   .. ..++-.-+++++....|.+
T Consensus       175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv  254 (342)
T PF06433_consen  175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV  254 (342)
T ss_dssp             EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred             ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence               222222222 334555555666678889888888887654333333222100   00 0145567899887766666


Q ss_pred             E----ee-------ceEEEEeCCCcccceeeccCCCccCEEEEEEccCCC-EEEEEe-cCCcEEEeecCCCcceeecC
Q 001163          995 V----HE-------TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQ-SIYVAF-EEGSVGVLTASTLRLRCRIN 1059 (1134)
Q Consensus       995 ~----~d-------~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~s~s-~Dg~i~vwd~~~~~~~~~~~ 1059 (1134)
                      -    .+       ..|.+||+.+++.+..+..   ...+.+|..|.|.+ +|++.+ .++.+.+||..+|+.+.++.
T Consensus       255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred             EecCCCCCCccCCceEEEEEECCCCeEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence            2    21       2489999999999999975   34677999999888 455544 57999999999999988877

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0396 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.51  E-value=1.7e-06  Score=88.83  Aligned_cols=119  Identities=13%  Similarity=0.197  Sum_probs=100.1

Q ss_pred             hHHHHHHHHHHhhhcCHHHHHHHHHHhcCCC--------ccHHHHHHHhhcccHHHHHHHHccc-CcccCCccchhHHHH
Q 001163            5 SRELVFLILQFLDEEKFKETVHKLEQDSGFF--------FNMRYFEDMVTNGEWDEVEKYLSGF-TKVDDNRYSMKIFFE   75 (1134)
Q Consensus         5 ~~e~~~li~q~L~~~g~~~s~~~l~~Esg~~--------~~~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~   75 (1134)
                      +.-+-|+|..||..+||.++|..|-++|.+.        .++..++++|++|+...|+.-.+.- ..+..  ....+-|.
T Consensus       115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK--~~S~lEf~  192 (389)
T KOG0396|consen  115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKK--EESSLEFQ  192 (389)
T ss_pred             HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh--ccchhhhH
Confidence            3456899999999999999999999999976        2367799999999999999888765 22222  22337799


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccc
Q 001163           76 IRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLENFR  125 (1134)
Q Consensus        76 i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~  125 (1134)
                      ++.|.|+||+..+++.+|+.+.++.+.|......++++....+|.++...
T Consensus       193 lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t  242 (389)
T KOG0396|consen  193 LRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYT  242 (389)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCcccc
Confidence            99999999999999999999999999999877778888888888886554

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=2.1e-06  Score=89.93  Aligned_cols=297  Identities=13%  Similarity=0.150  Sum_probs=192.7

Q ss_pred             ccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC
Q 001163          775 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN  854 (1134)
Q Consensus       775 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d  854 (1134)
                      |..-|+.+. ..-.+++++++-||.++.|.-..                    ..|......+..  |-..|..++.+.|
T Consensus         8 hrd~i~hv~-~tka~fiiqASlDGh~KFWkKs~--------------------isGvEfVKhFra--HL~~I~sl~~S~d   64 (558)
T KOG0882|consen    8 HRDVITHVF-PTKAKFIIQASLDGHKKFWKKSR--------------------ISGVEFVKHFRA--HLGVILSLAVSYD   64 (558)
T ss_pred             ccceeeeEe-eehhheEEeeecchhhhhcCCCC--------------------ccceeehhhhHH--HHHHHHhhhcccc
Confidence            555565554 34567899999999999994221                    022222222332  7788889999999


Q ss_pred             CCeEEEee--CCeEEEEEccCCeEEEEecCCCC-CeEEEEEcCCCC--cEEE-EEeCCCcEEEEEcccc--eEEEeccCc
Q 001163          855 DSYVMSAS--GGKISLFNMMTFKTMTTFMPPPP-AATFLAFHPQDN--NIIA-IGMEDSSIQIYNVRVD--EVKTKLKGH  926 (1134)
Q Consensus       855 g~~la~~s--dg~i~lwd~~~~~~~~~~~~~~~-~v~~l~~sp~~~--~~la-~g~~dg~i~iwd~~~~--~~~~~l~~h  926 (1134)
                      |.++.+.+  |..++++|+.+...+.-++...- .-.+...++ +.  ..|| +...+|.+.|+|-...  +....-.-|
T Consensus        65 g~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~sk-Gd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH  143 (558)
T KOG0882|consen   65 GWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSK-GDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLH  143 (558)
T ss_pred             ceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCC-CCeeeeEEeecccCCCcEEECCcCCcCccceecccc
Confidence            99999965  68899999987766644432221 222333344 21  1333 3456789999997543  333444569


Q ss_pred             cCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCcccccee-eee-------cCCCCCCCCCceEEEEcCCCCEEEE-Eee
Q 001163          927 QKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKF-LTI-------PNGRTASALADTRVQFHLDQTHLLA-VHE  997 (1134)
Q Consensus       927 ~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~-------~~~~~~~~~~v~~l~fs~dg~~l~~-~~d  997 (1134)
                      ..+|..+.+++-+..++|....|.|.-|.... ..+..+. +..       .-+.........++.|+|+|..+.+ +.|
T Consensus       144 ~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~-~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~D  222 (558)
T KOG0882|consen  144 FSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG-PFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPD  222 (558)
T ss_pred             cCceEEEEeeccccceeeccccceeEeecCCC-cccCccccccccccccchhhcccccccCccceEEccccCcccccCcc
Confidence            99999999999999999999999999999874 1110000 000       0011111145789999999999998 789


Q ss_pred             ceEEEEeCCCcccceeecc------------------------------CCC-ccCEEEEEEccCCCEEEEEecCCcEEE
Q 001163          998 TQIAIYEAPKLECLKQFVP------------------------------REA-SGPITHATYSCDSQSIYVAFEEGSVGV 1046 (1134)
Q Consensus       998 ~~i~iwd~~~~~~~~~~~~------------------------------~~h-~~~v~~~~~s~dg~~l~s~s~Dg~i~v 1046 (1134)
                      ..|++++..+|+.+..+..                              ..| ...-+.++|...|.+|+-++-=| |+|
T Consensus       223 rkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikv  301 (558)
T KOG0882|consen  223 RKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKV  301 (558)
T ss_pred             cEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEE
Confidence            9999999999987655431                              111 22446788999999999888776 999


Q ss_pred             eecCCCcceeecCCCccc-------CC----CCCC------CceeEEEEecCCCCCEEEEEecCCcEEEE
Q 001163         1047 LTASTLRLRCRINPTAYL-------PT----NPSL------RVYPLVIAGNPTDPNQFALGLTDGGVYII 1099 (1134)
Q Consensus      1047 wd~~~~~~~~~~~~~~~~-------~~----~h~~------~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW 1099 (1134)
                      .++.+++..+.+..-..+       ..    +|..      ...++ +-+.+ |+.+++++-..+.++++
T Consensus       302 in~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~-~~~~~-dpt~~c~a~kk~rfylf  369 (558)
T KOG0882|consen  302 INLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPL-LEFQK-DPTIVCTAFKKNRFYLF  369 (558)
T ss_pred             EEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcc-cccCC-CCeEEEeeeecceEEEE
Confidence            999999876655421100       00    0111      11111 22445 67888888888888888

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=2.1e-05  Score=81.71  Aligned_cols=249  Identities=12%  Similarity=0.107  Sum_probs=149.6

Q ss_pred             ccccCCCCEEEEEEcCCCC-EEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEE
Q 001163          413 LSSDYTASVNRVMWSPDGT-LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV  491 (1134)
Q Consensus       413 ~~~~h~~~V~~l~~spd~~-~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i  491 (1134)
                      ++.+|...|..++|||..+ ++..++.+..|+|.|+++...+.   .+..| ..+++++|.-|..+ +|..|...|.|.|
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv  262 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV  262 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence            5788999999999999766 88899999999999999976554   45556 78999999999876 8999999999999


Q ss_pred             EECCCCce-eEEecC--CCcCEEEEecccc----CCccEEEEecCCCcEEEEecCCCC--ceeeecCC-CCCeeEEEECc
Q 001163          492 WDAVTGTK-QYIFEG--HESPVYSICPHHK----ENIQFIFSTATDGKIKAWLYDNLG--SRVDYDAP-GHSSTMMAYSA  561 (1134)
Q Consensus       492 wd~~~~~~-~~~~~~--h~~~v~~~~~~~~----~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~-~~~v~~~~~s~  561 (1134)
                      +|++..+- +..+.+  ...+|..++.-+.    +.|.+++..+.+  +..|++....  ........ .+.+.++.+.+
T Consensus       263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~  340 (463)
T KOG1645|consen  263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG  340 (463)
T ss_pred             EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence            99986543 223322  2345555442211    112345544433  3456554322  12212222 33556677777


Q ss_pred             CCCEEEEEecCCCCCeEEE----EEeCCCCeeEEEec----CCCCCce---EEEEEcCCCCEEEEEe-CCCeEEEEEcCC
Q 001163          562 DGARLFSCGTNKEGESYLV----EWNESEGAVKRTYH----GLGKRSV---GVVQFDTTKNRFLAAG-DEFMIKFWDMDN  629 (1134)
Q Consensus       562 ~~~~l~~~~~~~~~~~~i~----~wd~~~~~~~~~~~----~~~~~~v---~~~~~~~~~~~l~~~~-~dg~i~iwd~~~  629 (1134)
                      ..+.++...........++    -.|-.+|..+..-.    +......   ..+.-.++.++++..+ +.+.+.+||..+
T Consensus       341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s  420 (463)
T KOG1645|consen  341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS  420 (463)
T ss_pred             ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence            6666666554322111111    12223333332111    1110011   1122345556666544 678899999999


Q ss_pred             CceeEEEecCCCCCCcceEEEcC-CC-cEEEEEECCCcEEEEEcc
Q 001163          630 VNLLASIDADGGLQASPCIRFNK-EG-ILLAVSTNDNGIKILANA  672 (1134)
Q Consensus       630 ~~~~~~~~~~~~~~~v~~v~~sp-~~-~~l~~~~~dg~i~iw~~~  672 (1134)
                      ++.++++...   .+|..+.... ++ .+|++-+ |..++||..+
T Consensus       421 ~evvQ~l~~~---epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e  461 (463)
T KOG1645|consen  421 FEVVQTLALS---EPVLDICPNDTNGSSYLALLT-DDRVHIYKNE  461 (463)
T ss_pred             hheeeecccC---cceeecceeecCCcchhhhee-cceEEEEecC
Confidence            9999998764   3555555443 33 4666555 4577887643

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.49  E-value=4.3e-05  Score=80.79  Aligned_cols=222  Identities=16%  Similarity=0.098  Sum_probs=138.0

Q ss_pred             CCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccc
Q 001163          438 SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHH  517 (1134)
Q Consensus       438 ~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~  517 (1134)
                      .+|+|..||..+|+.+.... +..-.....+.. .+++.  .+++++.++.+..||..+|+.+.++.. ...+...   +
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~-~~~~~~~~~~~~-~~~~~--~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~---~   72 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYD-LGPGIGGPVATA-VPDGG--RVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGA---P   72 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEE-CSSSCSSEEETE-EEETT--EEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSG---E
T ss_pred             CCCEEEEEECCCCCEEEEEE-CCCCCCCccceE-EEeCC--EEEEEcCCCEEEEEECCCCCEEEEeec-cccccce---e
Confidence            36889999999998876542 221112222222 33455  577778999999999999999887764 2221111   1


Q ss_pred             cCCccEEEEecCCCcEEEEecCCCCceeee-cCCC--C-CeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEe
Q 001163          518 KENIQFIFSTATDGKIKAWLYDNLGSRVDY-DAPG--H-SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTY  593 (1134)
Q Consensus       518 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~--~-~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~  593 (1134)
                      ...+..++.++.++.++.+|..+++..... ....  . .........++..++.+..    .+.|..+|+++|+.+..+
T Consensus        73 ~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~~~w~~  148 (238)
T PF13360_consen   73 VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGKLLWKY  148 (238)
T ss_dssp             EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET----CSEEEEEETTTTEEEEEE
T ss_pred             eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec----cCcEEEEecCCCcEEEEe
Confidence            112245677778889999999888887773 3221  1 1122233334777777654    335999999999998888


Q ss_pred             cCCCCCc---------eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCC
Q 001163          594 HGLGKRS---------VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN  664 (1134)
Q Consensus       594 ~~~~~~~---------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg  664 (1134)
                      .......         +..-....++ .++.++.++.+..+|..+++.+.... .   ..+.. ....++..|++++.++
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~---~~~~~-~~~~~~~~l~~~~~~~  222 (238)
T PF13360_consen  149 PVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-I---SGIYS-LPSVDGGTLYVTSSDG  222 (238)
T ss_dssp             ESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-S---S-ECE-CEECCCTEEEEEETTT
T ss_pred             ecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-C---CCccC-CceeeCCEEEEEeCCC
Confidence            7644211         1122222334 77777777754444999999664332 1   11222 1345777888888999


Q ss_pred             cEEEEEccCCcee
Q 001163          665 GIKILANADGIRL  677 (1134)
Q Consensus       665 ~i~iw~~~~~~~~  677 (1134)
                      .+..||..+++..
T Consensus       223 ~l~~~d~~tG~~~  235 (238)
T PF13360_consen  223 RLYALDLKTGKVV  235 (238)
T ss_dssp             EEEEEETTTTEEE
T ss_pred             EEEEEECCCCCEE
Confidence            9999999998543

...

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.47  E-value=1.4e-06  Score=84.67  Aligned_cols=216  Identities=15%  Similarity=0.111  Sum_probs=129.0

Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEE------------EeccCccCceEEEEEeeCCCEEEEEeCCCcEEEE
Q 001163          887 ATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVK------------TKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW  954 (1134)
Q Consensus       887 v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~------------~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iw  954 (1134)
                      ++.+.++-  ...|+++..++.+......++.+.            ..+..|+++-.+=+.+--++.++++..||.+.++
T Consensus        39 ~~~~~~v~--~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~  116 (319)
T KOG4714|consen   39 LSKVSLSA--EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF  116 (319)
T ss_pred             EEEeechh--hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence            55556653  446666666666555554433322            2333344433333334456789999999999999


Q ss_pred             ECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE------EeeceEEEEeCCCcccceeeccCCCccCEEEEEE
Q 001163          955 STDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA------VHETQIAIYEAPKLECLKQFVPREASGPITHATY 1028 (1134)
Q Consensus       955 d~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~------~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~ 1028 (1134)
                      +.+.....   ..++...+..    ..+.+.-..+..+.+      -.-+..+.|++...+.+..-.  .....|++++-
T Consensus       117 s~~~~~~~---~~~i~~~~~~----~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~--~~~~~v~~l~~  187 (319)
T KOG4714|consen  117 STDKDLAL---MSRIPSIHSG----SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK--KALDAVTALCS  187 (319)
T ss_pred             echHHHhh---hhhccccccc----ccccceeecccEEecCCcceEeeccceeeecccccccccccc--cccccchhhhC
Confidence            97662111   1111111111    122223334444444      233556677765333221111  11345999999


Q ss_pred             ccCCCE-EEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCCCCCC
Q 001163         1029 SCDSQS-IYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGR 1107 (1134)
Q Consensus      1029 s~dg~~-l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~~~ 1107 (1134)
                      .|..+. +++|++||.+-+||+.+.....      .+...|...+..+  -|+|.++..|++++.||++.-||.+..-  
T Consensus       188 hp~qq~~v~cgt~dg~~~l~d~rn~~~p~------S~l~ahk~~i~eV--~FHpk~p~~Lft~sedGslw~wdas~~~--  257 (319)
T KOG4714|consen  188 HPAQQHLVCCGTDDGIVGLWDARNVAMPV------SLLKAHKAEIWEV--HFHPKNPEHLFTCSEDGSLWHWDASTTF--  257 (319)
T ss_pred             CcccccEEEEecCCCeEEEEEcccccchH------HHHHHhhhhhhhe--eccCCCchheeEecCCCcEEEEcCCCce--
Confidence            987665 6678889999999998874322      2223577888877  8999999999999999999999988533  


Q ss_pred             ccCCCCCCCCCCCCCC
Q 001163         1108 WGTSPPNENGAGPSTT 1123 (1134)
Q Consensus      1108 ~~~~~~~~~~~~~~~~ 1123 (1134)
                      .+.+|.+..-++|.++
T Consensus       258 l~i~~~~s~~s~WLsg  273 (319)
T KOG4714|consen  258 LSISNQASVISSWLSG  273 (319)
T ss_pred             EEecCccccccccccC
Confidence            3355666555555543

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.47  E-value=0.00079  Score=66.15  Aligned_cols=138  Identities=9%  Similarity=-0.096  Sum_probs=90.2

Q ss_pred             cEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCce
Q 001163          522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSV  601 (1134)
Q Consensus       522 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v  601 (1134)
                      .+++.|+..+.+.--|..++....+.... ..+.+-+.- -|.+++.+..++    .+++.+.++|.....+..... .-
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~ilg-~RiE~sa~v-vgdfVV~GCy~g----~lYfl~~~tGs~~w~f~~~~~-vk   96 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAILG-VRIECSAIV-VGDFVVLGCYSG----GLYFLCVKTGSQIWNFVILET-VK   96 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehhhC-ceeeeeeEE-ECCEEEEEEccC----cEEEEEecchhheeeeeehhh-hc
Confidence            67788888888888887776665543332 223222221 466788877644    499999999988877766543 22


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEE
Q 001163          602 GVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKI  668 (1134)
Q Consensus       602 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~i  668 (1134)
                      ......+++..+.+|+.|+..+..|..+...+...+..+.  ...+-+..|-...|..+...|.+.-
T Consensus        97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~--~f~sP~i~~g~~sly~a~t~G~vla  161 (354)
T KOG4649|consen   97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG--TFVSPVIAPGDGSLYAAITAGAVLA  161 (354)
T ss_pred             cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc--eeccceecCCCceEEEEeccceEEE
Confidence            2345678899999999999999999999999988765433  2233444552233444444454433

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.46  E-value=9e-05  Score=82.95  Aligned_cols=265  Identities=14%  Similarity=0.161  Sum_probs=147.9

Q ss_pred             cCCCCeEEEEE--------eCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEE
Q 001163          365 HPVQQILLVVG--------TNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA  436 (1134)
Q Consensus       365 sp~g~~lla~g--------s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~  436 (1134)
                      |||++++|..-        +..+.+.|||+.+++...                    +......+....|||||+++|..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v   60 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV   60 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence            67888766532        234678999999876543                    12225688899999999999998


Q ss_pred             eCCCEEEEEEccCCceeeeeeeeec-------C---------CCCEEEEEEecCCCceEEEEEeC-CCe-----------
Q 001163          437 YSKHIVHLYTYHGGDELRNHLEIEA-------H---------VGSVNDLAFSYPNKQLSVVTCGE-DRV-----------  488 (1134)
Q Consensus       437 s~dg~v~iwd~~~~~~~~~~~~l~~-------h---------~~~V~~v~~s~~~~~~~l~s~s~-d~~-----------  488 (1134)
                      . ++.|.+++..++...+.  +..|       -         -+.-..+.||||+++  |+.... +..           
T Consensus        61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~~~~~~~~  135 (353)
T PF00930_consen   61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEYPLPDYSP  135 (353)
T ss_dssp             E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EEEEEEESS
T ss_pred             e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceEEeeccCC
Confidence            6 46799999887754331  1222       0         112356889999995  443321 222           


Q ss_pred             ------------------------EEEEECCCCceeE-E-e---cCCCcCEEEEeccccCCccEEEE--ecCCC---cEE
Q 001163          489 ------------------------IKVWDAVTGTKQY-I-F---EGHESPVYSICPHHKENIQFIFS--TATDG---KIK  534 (1134)
Q Consensus       489 ------------------------i~iwd~~~~~~~~-~-~---~~h~~~v~~~~~~~~~~~~~l~s--~s~dg---~i~  534 (1134)
                                              +.|+|+.+++... . .   ..-...+..+.|.++.  ..|+.  .+.+.   .+.
T Consensus       136 ~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~--~~l~~~~~nR~q~~~~l~  213 (353)
T PF00930_consen  136 PDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDG--KRLWVQWLNRDQNRLDLV  213 (353)
T ss_dssp             STESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETT--EEEEEEEEETTSTEEEEE
T ss_pred             ccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCC--cEEEEEEcccCCCEEEEE
Confidence                                    2234444443221 0 0   1123335555664433  42222  22222   255


Q ss_pred             EEecCCCCceeeecCC-CC---CeeEEEEC-cCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCce-EEEEEcC
Q 001163          535 AWLYDNLGSRVDYDAP-GH---SSTMMAYS-ADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSV-GVVQFDT  608 (1134)
Q Consensus       535 vwd~~~~~~~~~~~~~-~~---~v~~~~~s-~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v-~~~~~~~  608 (1134)
                      ++|..++......... ..   ......+. +++..++..+. ++|-..|.+++...+.......+.  -.| ..+.+++
T Consensus       214 ~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~~lT~G~--~~V~~i~~~d~  290 (353)
T PF00930_consen  214 LCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPRQLTSGD--WEVTSILGWDE  290 (353)
T ss_dssp             EEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEEESS-SS--S-EEEEEEEEC
T ss_pred             EEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEcccccceeccccCc--eeecccceEcC
Confidence            6677665554433221 12   22345554 78887777766 677888999999888755333332  245 4477888


Q ss_pred             CCCEEEEEe-C----CCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEE
Q 001163          609 TKNRFLAAG-D----EFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVST  661 (1134)
Q Consensus       609 ~~~~l~~~~-~----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~  661 (1134)
                      +++.++-.+ .    ...|+.-++..+..+..+......  ...+.|||++++++...
T Consensus       291 ~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~--~~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  291 DNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD--HYSASFSPDGKYYVDTY  346 (353)
T ss_dssp             TSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST--TEEEEE-TTSSEEEEEE
T ss_pred             CCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC--ceEEEECCCCCEEEEEE
Confidence            887665443 3    335666677734445555543221  15899999999887544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.45  E-value=5.4e-05  Score=85.97  Aligned_cols=187  Identities=9%  Similarity=0.008  Sum_probs=121.2

Q ss_pred             EEEcCCCCeEEEee--CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC----cEEEEEcccceEEEe
Q 001163          849 FALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDS----SIQIYNVRVDEVKTK  922 (1134)
Q Consensus       849 v~~s~dg~~la~~s--dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg----~i~iwd~~~~~~~~~  922 (1134)
                      +=+++||+.+...+  .+.+.+.|.++.+...++.- .+....+++++ +++++++.+.+.    ++..-+..+...+..
T Consensus       198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dgnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vv  275 (635)
T PRK02888        198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVV  275 (635)
T ss_pred             cccCCCCCEeecccceeEEEEEEECccceEEEEEEe-CCCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEE
Confidence            44567898775555  47799999999888877653 33557789999 788887775322    233333222111111


Q ss_pred             ccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCcc-ccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE--eece
Q 001163          923 LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEK-QASKFLTIPNGRTASALADTRVQFHLDQTHLLAV--HETQ  999 (1134)
Q Consensus       923 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~  999 (1134)
                      +.-.  .+  -++.++|++...+  ++.|.+.|..+... .......++.+..     ...+.+||||++++++  .+.+
T Consensus       276 fni~--~i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVGKs-----PHGV~vSPDGkylyVanklS~t  344 (635)
T PRK02888        276 FNIA--RI--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVPKN-----PHGVNTSPDGKYFIANGKLSPT  344 (635)
T ss_pred             EchH--HH--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECCCC-----ccceEECCCCCEEEEeCCCCCc
Confidence            1100  00  1334578776653  67799999876100 0112233334333     4679999999999994  6799


Q ss_pred             EEEEeCCCccc------------ceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCC
Q 001163         1000 IAIYEAPKLEC------------LKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTAST 1051 (1134)
Q Consensus      1000 i~iwd~~~~~~------------~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~ 1051 (1134)
                      |.|+|+.+.+.            ..+...   .......+|.++|....|..-|..|..||+++
T Consensus       345 VSVIDv~k~k~~~~~~~~~~~~vvaevev---GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        345 VTVIDVRKLDDLFDGKIKPRDAVVAEPEL---GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EEEEEChhhhhhhhccCCccceEEEeecc---CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            99999988653            333322   34556788999999888899999999999887

>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10

Probab=98.41  E-value=1.1e-06  Score=84.11  Aligned_cols=133  Identities=20%  Similarity=0.249  Sum_probs=96.6

Q ss_pred             HHHHHHHhhcccHHHHHHHHccc-CcccCCccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHH
Q 001163           38 MRYFEDMVTNGEWDEVEKYLSGF-TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEIT  116 (1134)
Q Consensus        38 ~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~  116 (1134)
                      ...++++|++|+++.|++.++.. +.+...  ...+.|.|+.|+|+|+|..++..+|+.+.|+.+.|......+.++++.
T Consensus         5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~--~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~   82 (145)
T PF10607_consen    5 RKKIRQAILNGDIDPAIEWLNENFPELLKR--NSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLM   82 (145)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHcCHHHHhc--CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            56799999999999999999887 222221  123889999999999999999999999999999776543457788888


Q ss_pred             HHhccccccc--ccccccCCCChhHHHHHHHHHHhhcccCcCccccccCCCCc-hHHHHHHHHHHHHHH
Q 001163          117 QLLTLENFRD--NEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLK-NSRLRTLINQSLNWQ  182 (1134)
Q Consensus       117 ~ll~~~~~~~--~~~~~~~~~~~~~R~~l~~~l~~~i~~~~~~~~~~~~~~~p-~~rL~~ll~qa~~~q  182 (1134)
                      .+|...+...  ...+..+- ....|+++++.+.+.+-....         +| .+.|+.++.+...-+
T Consensus        83 ~lL~~~~~~~~~~s~~~~l~-~~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l  141 (145)
T PF10607_consen   83 SLLAYPDPEEPLPSPYKELL-SPERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL  141 (145)
T ss_pred             HHHHcCCcccccchHHHHHh-ChHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence            8887766554  22222121 236789999999886654222         33 457888888765543

RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.40  E-value=0.00012  Score=83.19  Aligned_cols=348  Identities=11%  Similarity=0.084  Sum_probs=188.3

Q ss_pred             EEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEE
Q 001163          433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS  512 (1134)
Q Consensus       433 las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~  512 (1134)
                      +.||+..|.|+|+-+.+++.++....|..-..  +.--++.+.+.  ++..+.+|....|. +         .|.-.+..
T Consensus        69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~--~G~G~~~esk~--~l~~~~~~~~~~~g-D---------~HHp~~s~  134 (635)
T PRK02888         69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSA--TGWGITNESKK--VLGEGARGGKYLNG-D---------THHPHMSF  134 (635)
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCC--cccCCchhHHH--HhhccccCCcccCC-C---------cCCCcccc
Confidence            45788999999999999988775544332111  11112222332  22222222222332 1         12111110


Q ss_pred             EeccccCCccEEEEecC-CCcEEEEecCCCCceeeecCCCC-CeeEEEEC--cCCCEEEEEecCCCCCeEEEEEeCCCCe
Q 001163          513 ICPHHKENIQFIFSTAT-DGKIKAWLYDNLGSRVDYDAPGH-SSTMMAYS--ADGARLFSCGTNKEGESYLVEWNESEGA  588 (1134)
Q Consensus       513 ~~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~s--~~~~~l~~~~~~~~~~~~i~~wd~~~~~  588 (1134)
                      -  ...-||++++.-.. +.+|-..+++..++...+..+.. .+..+++-  |+-.+++.++..                
T Consensus       135 t--~g~ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~----------------  196 (635)
T PRK02888        135 T--DGTYDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEF----------------  196 (635)
T ss_pred             c--CCccceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCccc----------------
Confidence            0  12335677777664 55676777776665555444332 44455553  666666665421                


Q ss_pred             eEEEecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEE
Q 001163          589 VKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIK  667 (1134)
Q Consensus       589 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~  667 (1134)
                                    .+-+.|||+.+...+ ..+.+.+.|.++.+...++...+   ....++++|+|.++++.+.+.   
T Consensus       197 --------------~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg---npd~v~~spdGk~afvTsyNs---  256 (635)
T PRK02888        197 --------------RIPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG---NLDNVDTDYDGKYAFSTCYNS---  256 (635)
T ss_pred             --------------ccccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC---CcccceECCCCCEEEEeccCc---
Confidence                          122455665554333 55677888998888877776543   345789999999998876421   


Q ss_pred             EEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccccccc
Q 001163          668 ILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEA  747 (1134)
Q Consensus       668 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  747 (1134)
                          +.+. .+..+..                                                             ...
T Consensus       257 ----E~G~-tl~em~a-------------------------------------------------------------~e~  270 (635)
T PRK02888        257 ----EEGV-TLAEMMA-------------------------------------------------------------AER  270 (635)
T ss_pred             ----ccCc-ceeeecc-------------------------------------------------------------ccC
Confidence                1110 0000000                                                             000


Q ss_pred             ccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCC
Q 001163          748 VEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQP  827 (1134)
Q Consensus       748 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~  827 (1134)
                       ..+.+++...                    +  -.+.++|++....  ++.+.+.|.....                  
T Consensus       271 -d~~vvfni~~--------------------i--ea~vkdGK~~~V~--gn~V~VID~~t~~------------------  307 (635)
T PRK02888        271 -DWVVVFNIAR--------------------I--EEAVKAGKFKTIG--GSKVPVVDGRKAA------------------  307 (635)
T ss_pred             -ceEEEEchHH--------------------H--HHhhhCCCEEEEC--CCEEEEEECCccc------------------
Confidence             0111111110                    0  0234466655542  4456665433100                  


Q ss_pred             CCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee--CCeEEEEEccCCeE------------EEEecCCCCCeEEEEEc
Q 001163          828 PSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKT------------MTTFMPPPPAATFLAFH  893 (1134)
Q Consensus       828 ~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s--dg~i~lwd~~~~~~------------~~~~~~~~~~v~~l~~s  893 (1134)
                      ..+..+...++   -......+.+||||+++++++  ++++.|.|+.+.+.            ..+..- ...-...+|.
T Consensus       308 ~~~~~v~~yIP---VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFD  383 (635)
T PRK02888        308 NAGSALTRYVP---VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFD  383 (635)
T ss_pred             cCCcceEEEEE---CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEEC
Confidence            00111111111   245667899999999999887  78999999987553            333332 2334567888


Q ss_pred             CCCCcEEEEEeCCCcEEEEEccc----------ceEEEeccCccCceEE-----EEEeeCCCEEEEEe
Q 001163          894 PQDNNIIAIGMEDSSIQIYNVRV----------DEVKTKLKGHQKRITG-----LAFSNTLNVLVSSG  946 (1134)
Q Consensus       894 p~~~~~la~g~~dg~i~iwd~~~----------~~~~~~l~~h~~~V~~-----l~~s~d~~~l~s~s  946 (1134)
                      + +|....+-.-|..|..|++.+          ...+.++.-|-.+..-     =.-.+||++|++..
T Consensus       384 g-~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n  450 (635)
T PRK02888        384 G-RGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN  450 (635)
T ss_pred             C-CCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence            8 778888888999999999986          3455555555443221     12357899998864

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.38  E-value=9.3e-07  Score=62.34  Aligned_cols=39  Identities=28%  Similarity=0.543  Sum_probs=37.2

Q ss_pred             ceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 001163          917 DEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS  955 (1134)
Q Consensus       917 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd  955 (1134)
                      |+++.++.+|.+.|++++|+|++.+|++++.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467899999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=9.5e-06  Score=85.21  Aligned_cols=254  Identities=14%  Similarity=0.076  Sum_probs=171.9

Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeC-CCeEEEEEC
Q 001163          416 DYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-DRVIKVWDA  494 (1134)
Q Consensus       416 ~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~-d~~i~iwd~  494 (1134)
                      -|.+.|+.+..+ ..+++.+++.||.++.|.-..-.-+.-...+..|-+.|.+++.+.++.  ++.|.+. |..++++|+
T Consensus         7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDv   83 (558)
T KOG0882|consen    7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDV   83 (558)
T ss_pred             cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEe
Confidence            488888887655 567999999999999997654222222234677999999999999998  7888777 999999998


Q ss_pred             CCCceeEEecC--CCcCEEEEeccccC-Cc--cEEEEecCCCcEEEEecCCCCceee--ecCCCCCeeEEEECcCCCEEE
Q 001163          495 VTGTKQYIFEG--HESPVYSICPHHKE-NI--QFIFSTATDGKIKAWLYDNLGSRVD--YDAPGHSSTMMAYSADGARLF  567 (1134)
Q Consensus       495 ~~~~~~~~~~~--h~~~v~~~~~~~~~-~~--~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~  567 (1134)
                      .+-..+..++-  -.+.+   +|...+ +-  .+-++.-.++.+.++|-....+...  ...|..+|..+.+.+-+..++
T Consensus        84 En~DminmiKL~~lPg~a---~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~v  160 (558)
T KOG0882|consen   84 ENFDMINMIKLVDLPGFA---EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAV  160 (558)
T ss_pred             eccchhhhcccccCCCce---EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccccee
Confidence            87655533321  11222   221122 11  2223445678899998765553332  345677999999999999888


Q ss_pred             EEecCCCCCeEEEEEeCCC------CeeEEEecCC--------CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcee
Q 001163          568 SCGTNKEGESYLVEWNESE------GAVKRTYHGL--------GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL  633 (1134)
Q Consensus       568 ~~~~~~~~~~~i~~wd~~~------~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  633 (1134)
                      +.-    ..+.|..|....      .+....++..        ......++.|+|++..+.+-+.|..|++++..+|+.+
T Consensus       161 SiD----~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv  236 (558)
T KOG0882|consen  161 SID----ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV  236 (558)
T ss_pred             ecc----ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence            763    345689998772      1122112111        1225678999999999999999999999999998876


Q ss_pred             EEEecCC-------------------------------CCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEe
Q 001163          634 ASIDADG-------------------------------GLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTV  681 (1134)
Q Consensus       634 ~~~~~~~-------------------------------~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  681 (1134)
                      +.+....                               +...-..+.|...|++|+-++-= .|++.++.++ ...+.+
T Consensus       237 qeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn-~v~ri~  313 (558)
T KOG0882|consen  237 QEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTN-TVVRIL  313 (558)
T ss_pred             hhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eEEEEEeecC-eEEEEe
Confidence            5443100                               01123467788888888887765 4788888887 555555

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.33  E-value=0.00032  Score=73.79  Aligned_cols=136  Identities=12%  Similarity=0.090  Sum_probs=88.6

Q ss_pred             CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEec------CCCCCeEEEEEeCCCCeeEEEecCCCC------
Q 001163          531 GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGT------NKEGESYLVEWNESEGAVKRTYHGLGK------  598 (1134)
Q Consensus       531 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------~~~~~~~i~~wd~~~~~~~~~~~~~~~------  598 (1134)
                      +++.++|.++++.+-.+.  .+-.-.+..+||++.+++...      -+...-.|.+||..+-.+...+.-..+      
T Consensus        17 ~rv~viD~d~~k~lGmi~--~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMID--TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEEETTTTEEEEEEE--EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             ceEEEEECCCCcEEEEee--cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            357777766554333322  223445778999999887541      123345699999999877775433321      


Q ss_pred             CceEEEEEcCCCCEEEEEe--CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcC-CCcEEEEEECCCcEEEEEccCC
Q 001163          599 RSVGVVQFDTTKNRFLAAG--DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK-EGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       599 ~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      .......++.|+++++...  -...|.|-|+..++.+..+...+      |.-.-| ..+-+.+-+.||.+....+...
T Consensus        95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG------C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~  167 (342)
T PF06433_consen   95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG------CWLIYPSGNRGFSMLCGDGSLLTVTLDAD  167 (342)
T ss_dssp             --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS------EEEEEEEETTEEEEEETTSCEEEEEETST
T ss_pred             ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC------EEEEEecCCCceEEEecCCceEEEEECCC
Confidence            1123468889999888764  56789999999999998887643      233333 2246788899999999988744

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.31  E-value=0.00019  Score=85.32  Aligned_cols=282  Identities=11%  Similarity=0.169  Sum_probs=160.9

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la  434 (1134)
                      .++.|.++.|.-++..+ +.+..+|.|.+-|.++.....                    ...-.+.|.+++||||++.++
T Consensus        67 gd~~i~s~~fl~d~~~i-~v~~~~G~iilvd~et~~~ei--------------------vg~vd~GI~aaswS~Dee~l~  125 (1265)
T KOG1920|consen   67 GDDEIVSVQFLADTNSI-CVITALGDIILVDPETLELEI--------------------VGNVDNGISAASWSPDEELLA  125 (1265)
T ss_pred             CCcceEEEEEecccceE-EEEecCCcEEEEcccccceee--------------------eeeccCceEEEeecCCCcEEE
Confidence            34689999999999865 577888999999888775433                    234567999999999999999


Q ss_pred             EEeCCCEEEEEEccCCceeeeeeeee---cCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCce-eEEecCCCcCE
Q 001163          435 VAYSKHIVHLYTYHGGDELRNHLEIE---AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK-QYIFEGHESPV  510 (1134)
Q Consensus       435 s~s~dg~v~iwd~~~~~~~~~~~~l~---~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~h~~~v  510 (1134)
                      ..+.++++.+-+- +-..+... .+.   ...+....+-|-....+   +-|+. |...--+....+. +....-+.. =
T Consensus       126 liT~~~tll~mT~-~f~~i~E~-~L~~d~~~~sk~v~VGwGrkeTq---frgs~-gr~~~~~~~~~ek~~~~~~~~~~-~  198 (1265)
T KOG1920|consen  126 LITGRQTLLFMTK-DFEPIAEK-PLDADDERKSKFVNVGWGRKETQ---FRGSE-GRQAARQKIEKEKALEQIEQDDH-K  198 (1265)
T ss_pred             EEeCCcEEEEEec-cccchhcc-ccccccccccccceeccccccee---eecch-hhhcccccccccccccchhhccC-C
Confidence            9999887766543 11111111 110   01112233444332221   11111 1111111100000 000011211 2


Q ss_pred             EEEeccccCCccEEEEe-----cCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC
Q 001163          511 YSICPHHKENIQFIFST-----ATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES  585 (1134)
Q Consensus       511 ~~~~~~~~~~~~~l~s~-----s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~  585 (1134)
                      ++|+|  .+||+++++.     ..-+.|++||-+ +.....-....+.-.+++|-|.|..+++.....+ +..|.++.-+
T Consensus       199 ~~IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~IvffErN  274 (1265)
T KOG1920|consen  199 TSISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDIVFFERN  274 (1265)
T ss_pred             ceEEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC-CCcEEEEecC
Confidence            34566  5777888772     333789999876 2222222223334568999999999998875543 4457777643


Q ss_pred             C---CeeEEEecCCCCCceEEEEEcCCCCEEEE---EeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCC-cEEE
Q 001163          586 E---GAVKRTYHGLGKRSVGVVQFDTTKNRFLA---AGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG-ILLA  658 (1134)
Q Consensus       586 ~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~---~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~-~~l~  658 (1134)
                      .   |.....+..... .+..++|+.++..|++   ......|++|-..+..........  .....-+.|+|.. ..+.
T Consensus       275 GL~hg~f~l~~p~de~-~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~--~~~~~~~~W~p~~~~~L~  351 (1265)
T KOG1920|consen  275 GLRHGEFVLPFPLDEK-EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQ--FSQKALLMWDPVTEKTLH  351 (1265)
T ss_pred             CccccccccCCccccc-chheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEe--ccccccccccCCCceeEE
Confidence            1   222222333332 4889999999998888   445566999998876543322211  1111238899843 3444


Q ss_pred             EEECCCcEEEEEc
Q 001163          659 VSTNDNGIKILAN  671 (1134)
Q Consensus       659 ~~~~dg~i~iw~~  671 (1134)
                      +-..+|...+++.
T Consensus       352 v~~~sG~~~v~~~  364 (1265)
T KOG1920|consen  352 VLRESGQRLVRDF  364 (1265)
T ss_pred             EEecCCcEEEEEE
Confidence            4446777766664

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.30  E-value=1.1e-05  Score=91.13  Aligned_cols=189  Identities=17%  Similarity=0.179  Sum_probs=133.3

Q ss_pred             CCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccc
Q 001163          885 PAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQAS  964 (1134)
Q Consensus       885 ~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~  964 (1134)
                      ..++|++++   +++++.|+.+|.|++++.. +.. .+...|+..      ..+|.+++||+.||+|.|-.+.+.+..  
T Consensus        40 D~is~~av~---~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~--  106 (846)
T KOG2066|consen   40 DAISCCAVH---DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEI--  106 (846)
T ss_pred             hHHHHHHhh---cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccc--
Confidence            457788886   4799999999999999976 333 444456554      568999999999999999998875522  


Q ss_pred             eeeeecCCCCCCCCCceEEEEcCC-----CCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEe
Q 001163          965 KFLTIPNGRTASALADTRVQFHLD-----QTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAF 1039 (1134)
Q Consensus       965 ~~~~~~~~~~~~~~~v~~l~fs~d-----g~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s 1039 (1134)
                         ....-+    .++.+++++||     .+.+++|....+.++.-+-...........-.++|.++.|.  |.++|=++
T Consensus       107 ---~~~df~----rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan  177 (846)
T KOG2066|consen  107 ---TQYDFK----RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN  177 (846)
T ss_pred             ---eeEecC----CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEec--CcEEEEec
Confidence               112222    34889999998     45666654333888876544433333323347899999995  77888888


Q ss_pred             cCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCC
Q 001163         1040 EEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPL 1102 (1134)
Q Consensus      1040 ~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~ 1102 (1134)
                      ++| |+|||+.+++.+..+.++...   .....++-.+.|.+  ...|+.|=.| +|+|..+.
T Consensus       178 d~G-v~vyd~~~~~~l~~i~~p~~~---~R~e~fpphl~W~~--~~~LVIGW~d-~v~i~~I~  233 (846)
T KOG2066|consen  178 DDG-VKVYDTPTRQRLTNIPPPSQS---VRPELFPPHLHWQD--EDRLVIGWGD-SVKICSIK  233 (846)
T ss_pred             CCC-cEEEeccccceeeccCCCCCC---CCcccCCCceEecC--CCeEEEecCC-eEEEEEEe
Confidence            777 999999999999888866522   22344555668877  4566655444 78888887

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.29  E-value=7.8e-05  Score=88.49  Aligned_cols=273  Identities=9%  Similarity=0.072  Sum_probs=156.8

Q ss_pred             cccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCC
Q 001163          776 AMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKND  855 (1134)
Q Consensus       776 ~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg  855 (1134)
                      ...|.++.|..++..++.+..+|.|.+-|..                      +......   | .-...|.+++||||+
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~e----------------------t~~~eiv---g-~vd~GI~aaswS~De  121 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPE----------------------TLELEIV---G-NVDNGISAASWSPDE  121 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEccc----------------------ccceeee---e-eccCceEEEeecCCC
Confidence            3689999999999999999999988876433                      2221111   1 136789999999999


Q ss_pred             CeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccce-----EEEe------cc
Q 001163          856 SYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE-----VKTK------LK  924 (1134)
Q Consensus       856 ~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~-----~~~~------l~  924 (1134)
                      +.++.......-++...+..++..-.-+.      .-.+ .++ .+.+++...=.-+.-..|+     .+..      ..
T Consensus       122 e~l~liT~~~tll~mT~~f~~i~E~~L~~------d~~~-~sk-~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~  193 (1265)
T KOG1920|consen  122 ELLALITGRQTLLFMTKDFEPIAEKPLDA------DDER-KSK-FVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIE  193 (1265)
T ss_pred             cEEEEEeCCcEEEEEeccccchhcccccc------cccc-ccc-cceecccccceeeecchhhhcccccccccccccchh
Confidence            99999985443344444555444422110      0011 122 2222222211111111111     1100      01


Q ss_pred             CccCceEEEEEeeCCCEEEEE-----eCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE----E
Q 001163          925 GHQKRITGLAFSNTLNVLVSS-----GADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA----V  995 (1134)
Q Consensus       925 ~h~~~V~~l~~s~d~~~l~s~-----s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~----~  995 (1134)
                      .| +.=+.|.|--||.++|+.     .....|++||-+ +.......-..        ..-.+++|-|.|..+++    +
T Consensus       194 ~~-~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~--------~l~~~LsWkPsgs~iA~iq~~~  263 (1265)
T KOG1920|consen  194 QD-DHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVE--------GLQHSLSWKPSGSLIAAIQCKT  263 (1265)
T ss_pred             hc-cCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCccc--------ccccceeecCCCCeEeeeeecC
Confidence            12 223568999999999883     223789999977 33222111111        23467999999999998    3


Q ss_pred             eeceEEEEeCCCcccceeeccC--CCccCEEEEEEccCCCEEEE---EecCCcEEEeecCCCcceeecCCCcccCCCCCC
Q 001163          996 HETQIAIYEAPKLECLKQFVPR--EASGPITHATYSCDSQSIYV---AFEEGSVGVLTASTLRLRCRINPTAYLPTNPSL 1070 (1134)
Q Consensus       996 ~d~~i~iwd~~~~~~~~~~~~~--~h~~~v~~~~~s~dg~~l~s---~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~ 1070 (1134)
                      +|+.|.+|.-+. .....+..+  .....+..++|+.++..|++   ......|++|-+.+..........  +|..   
T Consensus       264 sd~~IvffErNG-L~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~--~~~~---  337 (1265)
T KOG1920|consen  264 SDSDIVFFERNG-LRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQ--FSQK---  337 (1265)
T ss_pred             CCCcEEEEecCC-ccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEe--cccc---
Confidence            667899998763 222222211  12344899999999999987   444455999999887654332211  1100   


Q ss_pred             CceeEEEEecCCCCCEEEEEecCCcEEEEeCC
Q 001163         1071 RVYPLVIAGNPTDPNQFALGLTDGGVYIIEPL 1102 (1134)
Q Consensus      1071 ~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~ 1102 (1134)
                          .-+.|+|.....|..-..+|...+.++.
T Consensus       338 ----~~~~W~p~~~~~L~v~~~sG~~~v~~~~  365 (1265)
T KOG1920|consen  338 ----ALLMWDPVTEKTLHVLRESGQRLVRDFA  365 (1265)
T ss_pred             ----ccccccCCCceeEEEEecCCcEEEEEEE
Confidence                0146666655555555566655555543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.25  E-value=2.9e-06  Score=85.97  Aligned_cols=154  Identities=14%  Similarity=0.131  Sum_probs=112.6

Q ss_pred             EEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCc
Q 001163          901 AIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALAD  980 (1134)
Q Consensus       901 a~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v  980 (1134)
                      ++.+.+..|-+-|+.+|.. ..|. -.+.|.++.|...++++..|+.+|.|...|+...........+.....    +.|
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~----Ssv  301 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHD----SSV  301 (425)
T ss_pred             ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcC----cch
Confidence            4555677788999988742 3344 567799999998899999999999999999987533222222222211    357


Q ss_pred             eEEEEcC-CCCEEEE-EeeceEEEEeCCCccc---ceeeccCCCccCE--EEEEEccCCCEEEEEecCCcEEEeecCCCc
Q 001163          981 TRVQFHL-DQTHLLA-VHETQIAIYEAPKLEC---LKQFVPREASGPI--THATYSCDSQSIYVAFEEGSVGVLTASTLR 1053 (1134)
Q Consensus       981 ~~l~fs~-dg~~l~~-~~d~~i~iwd~~~~~~---~~~~~~~~h~~~v--~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~ 1053 (1134)
                      +++..-. ++.+|++ +.+|+|.+||..--++   +.++.  +|...-  .-+.+.+....++++++|...|||.+.+|.
T Consensus       302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe--GHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh  379 (425)
T KOG2695|consen  302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE--GHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH  379 (425)
T ss_pred             hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee--cccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence            7777655 6667776 6899999999987777   66666  664332  233455677788999999999999999999


Q ss_pred             ceeecCCCc
Q 001163         1054 LRCRINPTA 1062 (1134)
Q Consensus      1054 ~~~~~~~~~ 1062 (1134)
                      +++.+..+.
T Consensus       380 Ll~tipf~~  388 (425)
T KOG2695|consen  380 LLCTIPFPY  388 (425)
T ss_pred             eeeccCCCC
Confidence            998887443

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.22  E-value=2.3e-05  Score=89.65  Aligned_cols=181  Identities=15%  Similarity=0.184  Sum_probs=132.8

Q ss_pred             CCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEE
Q 001163          854 NDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITG  932 (1134)
Q Consensus       854 dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~  932 (1134)
                      ++..++.|+ ...+..+|+.+.+..+...-..+.|+-+..   +++++.+|...|+|.+-|..+.+.++++..|++.|.+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD  222 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD  222 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence            334555565 677888999988887776655556666665   6789999999999999999999999999999999987


Q ss_pred             EEEeeCCCEEEEEeC---------CCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCC--CCEEEEEeeceEE
Q 001163          933 LAFSNTLNVLVSSGA---------DSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLD--QTHLLAVHETQIA 1001 (1134)
Q Consensus       933 l~~s~d~~~l~s~s~---------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d--g~~l~~~~d~~i~ 1001 (1134)
                      +..  .|+.|+|||.         |.-|+|||+..-+...  .++.+.+       ..-+.|.|.  .++.+++..|...
T Consensus       223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~--PI~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q  291 (1118)
T KOG1275|consen  223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS--PIQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQ  291 (1118)
T ss_pred             eec--cCCeEEEeecccccccccccchhhhhhhhhhhccC--CcccccC-------chhhhhcccccceEEEEeccccee
Confidence            555  6999999985         5568999998754322  2333332       244677775  3344447889999


Q ss_pred             EEeCCCcc-c-ceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEee
Q 001163         1002 IYEAPKLE-C-LKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLT 1048 (1134)
Q Consensus      1002 iwd~~~~~-~-~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd 1048 (1134)
                      +-|..+.. . ........-...+..+++|++|..|+.|..+|.|-+|.
T Consensus       292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             eccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            99843221 1 11222112245599999999999999999999999998

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.21  E-value=0.003  Score=68.05  Aligned_cols=279  Identities=14%  Similarity=0.127  Sum_probs=139.4

Q ss_pred             EEcCCCCeEEEEEeCCC--cEEEEecCCccceeeeceeeeeccccCccccccccccCC-CCEEEEEEcCCCCEEEEEeCC
Q 001163          363 DFHPVQQILLVVGTNMG--DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT-ASVNRVMWSPDGTLFGVAYSK  439 (1134)
Q Consensus       363 ~fsp~g~~lla~gs~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spd~~~las~s~d  439 (1134)
                      +|.+||++||..+..||  .+.+.|+.+++..+                    |+... .......++|+++.++-....
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~~  101 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKNG  101 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEETT
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEECC
Confidence            68999999999888776  56677888887654                    22222 223356778988988877677


Q ss_pred             CEEEEEEccCCceeeeeeeeecCCCCEEEEEEec--CCCceEEEEEe----------------------CCCeEEEEECC
Q 001163          440 HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY--PNKQLSVVTCG----------------------EDRVIKVWDAV  495 (1134)
Q Consensus       440 g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~--~~~~~~l~s~s----------------------~d~~i~iwd~~  495 (1134)
                      ..|+-.|+.+.+...   .+......+-...|..  |+.  .++..-                      ..+.|.--|+.
T Consensus       102 ~~l~~vdL~T~e~~~---vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~  176 (386)
T PF14583_consen  102 RSLRRVDLDTLEERV---VYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK  176 (386)
T ss_dssp             TEEEEEETTT--EEE---EEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT
T ss_pred             CeEEEEECCcCcEEE---EEECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC
Confidence            789999999976432   3444555565566653  344  333221                      12235556777


Q ss_pred             CCceeEEecCCCcCEEEEeccccCCccEEEEec---CCCc-EEEEecCCCCceee-ecCC--CCCeeEEEECcCCCEEEE
Q 001163          496 TGTKQYIFEGHESPVYSICPHHKENIQFIFSTA---TDGK-IKAWLYDNLGSRVD-YDAP--GHSSTMMAYSADGARLFS  568 (1134)
Q Consensus       496 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---~dg~-i~vwd~~~~~~~~~-~~~~--~~~v~~~~~s~~~~~l~~  568 (1134)
                      +|+....+. -...+..+.|+|..+ .+|+-|-   .+.. -|||-+++.+.... +..+  ...+..=-|.|||..+..
T Consensus       177 tG~~~~v~~-~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y  254 (386)
T PF14583_consen  177 TGERKVVFE-DTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY  254 (386)
T ss_dssp             T--EEEEEE-ESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred             CCceeEEEe-cCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence            776544443 445566777777554 3444432   2221 36776654433222 2111  223444568999998876


Q ss_pred             Eec-CCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCC----------------eEEEEEcCCCc
Q 001163          569 CGT-NKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF----------------MIKFWDMDNVN  631 (1134)
Q Consensus       569 ~~~-~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----------------~i~iwd~~~~~  631 (1134)
                      .+. .+..+..|.-+|+.+++........   ....+..++|++.++-=+.|.                -|++++...+.
T Consensus       255 ~~~~~~~~~~~i~~~d~~t~~~~~~~~~p---~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~  331 (386)
T PF14583_consen  255 DSYTPGGQDFWIAGYDPDTGERRRLMEMP---WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGR  331 (386)
T ss_dssp             EEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTE
T ss_pred             EeecCCCCceEEEeeCCCCCCceEEEeCC---ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCc
Confidence            544 3334667888999988654433321   334456678887776533331                56778887766


Q ss_pred             eeEEEecC-------CC-CCCcceEEEcCCCcEEEEEE-CCCcEEEEEc
Q 001163          632 LLASIDAD-------GG-LQASPCIRFNKEGILLAVST-NDNGIKILAN  671 (1134)
Q Consensus       632 ~~~~~~~~-------~~-~~~v~~v~~sp~~~~l~~~~-~dg~i~iw~~  671 (1134)
                      ........       ++ ...-....|+|||++++-.| ..|...||-+
T Consensus       332 ~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  332 FRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             EEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred             eeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence            54322210       00 01124689999998776554 4677666644

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.21  E-value=5.6e-05  Score=86.59  Aligned_cols=182  Identities=8%  Similarity=0.080  Sum_probs=126.9

Q ss_pred             CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCc
Q 001163          429 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES  508 (1134)
Q Consensus       429 d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~  508 (1134)
                      ++..++.|+-...+..+|+.+.+..+.   ..-....|.-|..  +++  ++.+|...|+|.+-|..+.+.++++..|++
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~---~~v~a~~v~imR~--Nnr--~lf~G~t~G~V~LrD~~s~~~iht~~aHs~  218 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRT---TNVSASGVTIMRY--NNR--NLFCGDTRGTVFLRDPNSFETIHTFDAHSG  218 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeee---eeccCCceEEEEe--cCc--EEEeecccceEEeecCCcCceeeeeecccc
Confidence            456777787778889999998876552   2223334555543  466  799999999999999999999999999999


Q ss_pred             CEEEEeccccCCccEEEEecC---------CCcEEEEecCCCCceeeecCCCCCeeEEEECcCC-CEEEEEecCCCCCeE
Q 001163          509 PVYSICPHHKENIQFIFSTAT---------DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADG-ARLFSCGTNKEGESY  578 (1134)
Q Consensus       509 ~v~~~~~~~~~~~~~l~s~s~---------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~  578 (1134)
                      .|..+..    .|++|++++.         |..|+|||++..+....+..+.++ .-+.|.|.- ..+++++..+    .
T Consensus       219 siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sG----q  289 (1118)
T KOG1275|consen  219 SISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSG----Q  289 (1118)
T ss_pred             ceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEeccc----c
Confidence            9998754    3478888874         566899999987766655544433 345566643 3455554433    3


Q ss_pred             EEEEeCCC-Cee-EEEecCC-CCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001163          579 LVEWNESE-GAV-KRTYHGL-GKRSVGVVQFDTTKNRFLAAGDEFMIKFWD  626 (1134)
Q Consensus       579 i~~wd~~~-~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  626 (1134)
                      ..+-|..+ +.+ ...+..+ ....+..++++++++.++.|..+|.|.+|.
T Consensus       290 ~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  290 FQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             eeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            66666221 111 2222222 222488899999999999999999999997

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.16  E-value=0.037  Score=65.28  Aligned_cols=225  Identities=14%  Similarity=0.135  Sum_probs=122.5

Q ss_pred             CeEEEeeCCeEEEEEccCCe--EEEEecCCCCCeEEEEEcCCCCcEEEEEeC-----------C---CcEEEEEcccceE
Q 001163          856 SYVMSASGGKISLFNMMTFK--TMTTFMPPPPAATFLAFHPQDNNIIAIGME-----------D---SSIQIYNVRVDEV  919 (1134)
Q Consensus       856 ~~la~~sdg~i~lwd~~~~~--~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-----------d---g~i~iwd~~~~~~  919 (1134)
                      ..|+.+..+.+++.-++.-+  .++++. -......+++.+ ....+++.+.           .   ..++++|-.|-+.
T Consensus       685 d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~v  762 (1096)
T KOG1897|consen  685 DSLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEV  762 (1096)
T ss_pred             ceEEEecCCceEEEEecchhhcceeeec-CCCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCceeE
Confidence            35666666777776654322  222322 233455566655 3333333321           1   1467777666655


Q ss_pred             EEeccC--cc--CceEEEEEeeC-CCEEEEEeC----------CCcEEEEECCCCccccceeeeecCCCCCCCCCceEEE
Q 001163          920 KTKLKG--HQ--KRITGLAFSNT-LNVLVSSGA----------DSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQ  984 (1134)
Q Consensus       920 ~~~l~~--h~--~~V~~l~~s~d-~~~l~s~s~----------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~  984 (1134)
                      +...+-  ..  -.|.++.|..| +.+++.|..          .|.|.++.+..........-....      +.+.++.
T Consensus       763 l~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~------Gav~aL~  836 (1096)
T KOG1897|consen  763 LSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVK------GAVYALV  836 (1096)
T ss_pred             EeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeec------cceeehh
Confidence            443221  11  23455568877 677777642          466777777662211100000111      1222222


Q ss_pred             EcCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeec--CCCcceeecCCCc
Q 001163          985 FHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTA--STLRLRCRINPTA 1062 (1134)
Q Consensus       985 fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~--~~~~~~~~~~~~~ 1062 (1134)
                      . -+| .++++-+..|++|++.+.+.++.-.  .|...+..+...-.|..+++|.--++|.+-..  ..|...-....  
T Consensus       837 ~-fng-kllA~In~~vrLye~t~~~eLr~e~--~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD--  910 (1096)
T KOG1897|consen  837 E-FNG-KLLAGINQSVRLYEWTTERELRIEC--NISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARD--  910 (1096)
T ss_pred             h-hCC-eEEEecCcEEEEEEccccceehhhh--cccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehh--
Confidence            1 133 4556777899999999886555444  67889999999999999999988887766544  44434322221  


Q ss_pred             ccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCC
Q 001163         1063 YLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPL 1102 (1134)
Q Consensus      1063 ~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~ 1102 (1134)
                      +    |..-.+++.+-    +...++-+..+|.+.+-..+
T Consensus       911 ~----~p~Wmtaveil----~~d~ylgae~~gNlf~v~~d  942 (1096)
T KOG1897|consen  911 Y----NPNWMTAVEIL----DDDTYLGAENSGNLFTVRKD  942 (1096)
T ss_pred             h----CccceeeEEEe----cCceEEeecccccEEEEEec
Confidence            1    11112333322    45566667777877776655

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.16  E-value=0.00033  Score=78.71  Aligned_cols=283  Identities=14%  Similarity=0.095  Sum_probs=160.3

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la  434 (1134)
                      +...|.--+++..+++ ++.|+.-|.+++|+-.+++....+                  ..+-.+.+..+..|++..++|
T Consensus        32 ~~~~v~lTc~dst~~~-l~~GsS~G~lyl~~R~~~~~~~~~------------------~~~~~~~~~~~~vs~~e~lvA   92 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEY-LAMGSSAGSVYLYNRHTGEMRKLK------------------NEGATGITCVRSVSSVEYLVA   92 (726)
T ss_pred             CcceEEEEEeecCCce-EEEecccceEEEEecCchhhhccc------------------ccCccceEEEEEecchhHhhh
Confidence            4445555667777875 589999999999999888754421                  234566778888999999999


Q ss_pred             EEeCCCEEEEEEccCCceeeeee--ee-ecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC----ceeEEecCCC
Q 001163          435 VAYSKHIVHLYTYHGGDELRNHL--EI-EAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG----TKQYIFEGHE  507 (1134)
Q Consensus       435 s~s~dg~v~iwd~~~~~~~~~~~--~l-~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~----~~~~~~~~h~  507 (1134)
                      .|+..|.|.++-+..+.......  .. ..|...|++++|++++.  .+++|..-|.|..-.+.+.    ...+.+....
T Consensus        93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d  170 (726)
T KOG3621|consen   93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED  170 (726)
T ss_pred             hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence            99999999999887743322111  11 23788999999999999  6999999999998887762    1122333345


Q ss_pred             cCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCC-C-CeeEEEECcC----CCEEEEEecCCCCCeEEEE
Q 001163          508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG-H-SSTMMAYSAD----GARLFSCGTNKEGESYLVE  581 (1134)
Q Consensus       508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~-~v~~~~~s~~----~~~l~~~~~~~~~~~~i~~  581 (1134)
                      +.|..+.+..    .+|+.++.-..+ +++.+.......-+... + .-...+|-|.    .+-.+.++.-+     .++
T Consensus       171 s~IVQlD~~q----~~LLVStl~r~~-Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-----~Rl  240 (726)
T KOG3621|consen  171 SEIVQLDYLQ----SYLLVSTLTRCI-LCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-----LRL  240 (726)
T ss_pred             cceEEeeccc----ceehHhhhhhhh-eeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-----Cce
Confidence            6676665422    233333332332 44444322111111111 1 1233445443    33444444433     677


Q ss_pred             EeCC-CCeeEEEecCCC------C----------C-------ceEEEEE----cCCCCEEEEEeCCCeEEEEEcCCCcee
Q 001163          582 WNES-EGAVKRTYHGLG------K----------R-------SVGVVQF----DTTKNRFLAAGDEFMIKFWDMDNVNLL  633 (1134)
Q Consensus       582 wd~~-~~~~~~~~~~~~------~----------~-------~v~~~~~----~~~~~~l~~~~~dg~i~iwd~~~~~~~  633 (1134)
                      |... .|+.+++..-..      .          .       .-..+.|    .-.+.++++-++-| |+|+|.++.+.+
T Consensus       241 Wead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v~  319 (726)
T KOG3621|consen  241 WEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQVY  319 (726)
T ss_pred             EEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceEE
Confidence            8654 244433321100      0          0       0000111    01122444544444 888887765544


Q ss_pred             EEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163          634 ASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       634 ~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      .-...   ...|..+  +..|+-|++-..||.+++..+.+.
T Consensus       320 l~se~---~~DI~dV--s~~~neiFvL~~d~~l~~~sv~s~  355 (726)
T KOG3621|consen  320 LWSEG---GHDILDV--SHCGNEIFVLNLDRGLKVESVASR  355 (726)
T ss_pred             EeecC---CCceeEE--eecCceEEEEecCCceeEEEeehh
Confidence            43322   1233333  344666767777777777766554

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.16  E-value=0.00013  Score=83.35  Aligned_cols=205  Identities=15%  Similarity=0.172  Sum_probs=127.3

Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCc-eEEEEEeeCCCEEEEEeCCCc-----EEEEECCCCcccc-
Q 001163          891 AFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKR-ITGLAFSNTLNVLVSSGADSQ-----LCVWSTDGWEKQA-  963 (1134)
Q Consensus       891 ~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~~l~s~s~Dg~-----i~iwd~~~~~~~~-  963 (1134)
                      +|++ ++..+|.|+.+|.|.+++- .-+.+..++.+... |+.+-...+..+|++.+.|+.     ++||+++.-+... 
T Consensus        30 c~~s-~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   30 CCSS-STGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             EEcC-CCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            3556 7789999999998888773 34555788888777 555555555579999888765     8999998754333 


Q ss_pred             ceee---eecCCCC-CCCCCceEEEEcCCCCEEEEE-eeceEEEEeCC--CcccceeeccCCCccCEEEEEEccCCCEEE
Q 001163          964 SKFL---TIPNGRT-ASALADTRVQFHLDQTHLLAV-HETQIAIYEAP--KLECLKQFVPREASGPITHATYSCDSQSIY 1036 (1134)
Q Consensus       964 ~~~~---~~~~~~~-~~~~~v~~l~fs~dg~~l~~~-~d~~i~iwd~~--~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~ 1036 (1134)
                      ..++   .+..... ....++.+++.|.+-+.+|+| .+|.|..+.=+  ..+-.+.-....-..+|+.+++-.|++.++
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l  187 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL  187 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence            2233   2221111 122678999999999999998 78999888532  111112222122378999999999999833


Q ss_pred             EEecCCcEEEeecCCCcce-eecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCCCCCCc
Q 001163         1037 VAFEEGSVGVLTASTLRLR-CRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGRW 1108 (1134)
Q Consensus      1037 s~s~Dg~i~vwd~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~~~~ 1108 (1134)
                      -+..-..|.+|.+....+. +.+.       .|...+.  |.+|++..++ +++++. ..|.+|+.+.-...|
T Consensus       188 Fv~Tt~~V~~y~l~gr~p~~~~ld-------~~G~~ln--Css~~~~t~q-fIca~~-e~l~fY~sd~~~~cf  249 (933)
T KOG2114|consen  188 FVATTEQVMLYSLSGRTPSLKVLD-------NNGISLN--CSSFSDGTYQ-FICAGS-EFLYFYDSDGRGPCF  249 (933)
T ss_pred             EEEecceeEEEEecCCCcceeeec-------cCCccce--eeecCCCCcc-EEEecC-ceEEEEcCCCcceee
Confidence            3334467999999843311 1122       2333333  3355553332 444443 358888887544444

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.15  E-value=5.7e-05  Score=83.56  Aligned_cols=137  Identities=15%  Similarity=0.101  Sum_probs=95.7

Q ss_pred             ccCCCCCceeEEEeecCCCeeEEEEcCCCCeEEEEE----eCCCc----EEEEecCCccceeeeceeeeeccccCccccc
Q 001163          340 YSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVG----TNMGD----VMLWEVGSRERIAVKSFKVWELGACSMPLQA  411 (1134)
Q Consensus       340 ~~~d~~~~~~~~~~~h~~~V~~v~fsp~g~~lla~g----s~dg~----v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (1134)
                      +...+..-+++..+.-.....++.||-...+.+.+-    +.+|.    -++|++..++..+. .+              
T Consensus       189 ~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrv-sv--------------  253 (545)
T PF11768_consen  189 LSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRV-SV--------------  253 (545)
T ss_pred             EEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEE-EE--------------
Confidence            333333445555566667778999998555544432    23443    45677765442221 11              


Q ss_pred             cccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEE
Q 001163          412 SLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV  491 (1134)
Q Consensus       412 ~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i  491 (1134)
                       ..-.....|.|++++|+.+.|+.|+.||+|++||...+...     +..+.-..+.++|+|+|.  ++++|+..|.+.+
T Consensus       254 -tsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qGelQ~  325 (545)
T PF11768_consen  254 -TSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQGELQC  325 (545)
T ss_pred             -EEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCceEEE
Confidence             12346789999999999999999999999999999876432     223455688999999999  8999999999999


Q ss_pred             EECCCCce
Q 001163          492 WDAVTGTK  499 (1134)
Q Consensus       492 wd~~~~~~  499 (1134)
                      ||+.-...
T Consensus       326 FD~ALspi  333 (545)
T PF11768_consen  326 FDMALSPI  333 (545)
T ss_pred             EEeecCcc
Confidence            99765433

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.15  E-value=0.0015  Score=73.19  Aligned_cols=299  Identities=11%  Similarity=0.065  Sum_probs=153.1

Q ss_pred             CcCCCEEEEEecC-----CCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeE
Q 001163          560 SADGARLFSCGTN-----KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLA  634 (1134)
Q Consensus       560 s~~~~~l~~~~~~-----~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  634 (1134)
                      |||+++++.....     .+....+.++|+.+++.......  ...+....|+|+|+.++... ++.|++++..++... 
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~-   76 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP--PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET-   76 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E--ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE-
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC--ccccccceeecCCCeeEEEe-cCceEEEECCCCCeE-
Confidence            5788877764321     11234589999999876655444  23677899999999998886 478999998887443 


Q ss_pred             EEecCCC----------------CCCcceEEEcCCCcEEEEEEC-CCcEEEEEccC---Cce---eEEEeccCccccccc
Q 001163          635 SIDADGG----------------LQASPCIRFNKEGILLAVSTN-DNGIKILANAD---GIR---LLRTVESRTFDASRV  691 (1134)
Q Consensus       635 ~~~~~~~----------------~~~v~~v~~sp~~~~l~~~~~-dg~i~iw~~~~---~~~---~~~~~~~~~~~~~~~  691 (1134)
                      .+...+.                ...-..+.||||+++|+.... +..+..+.+..   ...   ....+.-        
T Consensus        77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~Y--------  148 (353)
T PF00930_consen   77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRY--------  148 (353)
T ss_dssp             ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE---------
T ss_pred             EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCccccccc--------
Confidence            3332220                123467899999999887644 44555444321   111   1111110        


Q ss_pred             chhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccccccccc--ccceeeecccCCccceeccc
Q 001163          692 ASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVE--KSRIWKLTEITEPSQCRSLR  769 (1134)
Q Consensus       692 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~iw~~~~~~~~~~~~~~~  769 (1134)
                                                                        -..|...-  .+.++++.+....    .+.
T Consensus       149 --------------------------------------------------Pk~G~~np~v~l~v~~~~~~~~~----~~~  174 (353)
T PF00930_consen  149 --------------------------------------------------PKAGDPNPRVSLFVVDLASGKTT----ELD  174 (353)
T ss_dssp             ---------------------------------------------------BTTS---EEEEEEEESSSTCCC----EE-
T ss_pred             --------------------------------------------------CCCCCcCCceEEEEEECCCCcEE----Eee
Confidence                                                              00111111  3344455432221    111


Q ss_pred             cCC--ccccccEEEEEEecCCceeeeecc--C-CeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCC-CCCC
Q 001163          770 LPD--NLTAMRVSRLIYTNSGLAILALAS--N-AVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISD-TNPE  843 (1134)
Q Consensus       770 ~~~--~~~~~~i~~l~~spdg~~l~~~~~--d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~h~  843 (1134)
                      .+.  ......+..+.|.++++.++..-.  + ..+.+..+                    |..++......... .+--
T Consensus       175 ~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~--------------------d~~tg~~~~~~~e~~~~Wv  234 (353)
T PF00930_consen  175 PPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLC--------------------DASTGETRVVLEETSDGWV  234 (353)
T ss_dssp             --HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEE--------------------EECTTTCEEEEEEESSSSS
T ss_pred             eccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEE--------------------ECCCCceeEEEEecCCcce
Confidence            110  124677899999999984443332  2 23333221                    22222211100000 0011


Q ss_pred             CCeeEEEEc-CCCCeEEEee--CC--eEEEEEccCCeEEEEecCCCCCeEE-EEEcCCCCcEEEEEeCCC----cEEEEE
Q 001163          844 DAVPCFALS-KNDSYVMSAS--GG--KISLFNMMTFKTMTTFMPPPPAATF-LAFHPQDNNIIAIGMEDS----SIQIYN  913 (1134)
Q Consensus       844 ~~v~~v~~s-~dg~~la~~s--dg--~i~lwd~~~~~~~~~~~~~~~~v~~-l~~sp~~~~~la~g~~dg----~i~iwd  913 (1134)
                      ..-....+. +++..++..+  +|  .|.+++..++.. ..+....-.|+. +.++++++.+.+++..++    .|+.-+
T Consensus       235 ~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~  313 (353)
T PF00930_consen  235 DVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVS  313 (353)
T ss_dssp             SSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred             eeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence            112345554 6776655554  55  477778776663 455545556744 778884455555666533    555556


Q ss_pred             cccceEEEeccCccCceEEEEEeeCCCEEEEE
Q 001163          914 VRVDEVKTKLKGHQKRITGLAFSNTLNVLVSS  945 (1134)
Q Consensus       914 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~  945 (1134)
                      +.++..+..+....+.-..+.|||++++++-.
T Consensus       314 ~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~  345 (353)
T PF00930_consen  314 LDSGGEPKCLTCEDGDHYSASFSPDGKYYVDT  345 (353)
T ss_dssp             TTETTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred             eCCCCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence            66233445555444333689999999988754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.13  E-value=7.7e-06  Score=57.57  Aligned_cols=39  Identities=28%  Similarity=0.507  Sum_probs=36.8

Q ss_pred             CeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 001163          874 FKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYN  913 (1134)
Q Consensus       874 ~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd  913 (1134)
                      ++++.++.+|...|++++|+| ++.+|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence            467889999999999999999 899999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=0.00044  Score=79.29  Aligned_cols=203  Identities=14%  Similarity=0.150  Sum_probs=136.1

Q ss_pred             EEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCC-eEEEEEcCCCCcEEEEEeCCC-----cEEEEEcccc----
Q 001163          849 FALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPA-ATFLAFHPQDNNIIAIGMEDS-----SIQIYNVRVD----  917 (1134)
Q Consensus       849 v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~-v~~l~~sp~~~~~la~g~~dg-----~i~iwd~~~~----  917 (1134)
                      -++++.+..++.|+ +|.|.+.+- +.+.++.++.+... |+.+-... +..+|++.+.|+     .++||++..-    
T Consensus        29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~  106 (933)
T KOG2114|consen   29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN  106 (933)
T ss_pred             eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence            35778888999998 899888874 44555777777766 55554443 446787777665     4899998642    


Q ss_pred             --eEE--EeccC-----ccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCC
Q 001163          918 --EVK--TKLKG-----HQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLD  988 (1134)
Q Consensus       918 --~~~--~~l~~-----h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d  988 (1134)
                        +++  ..+..     ...++.+++.|.+-+.+|.|-.||.|..+.=+--+....+..-...+.    .+|+.++|..|
T Consensus       107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~----~pITgL~~~~d  182 (933)
T KOG2114|consen  107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK----EPITGLALRSD  182 (933)
T ss_pred             CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCC----CCceeeEEecC
Confidence              223  12222     346788999999999999999999999885332221222222223333    46999999999


Q ss_pred             CCE-EEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecC
Q 001163          989 QTH-LLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRIN 1059 (1134)
Q Consensus       989 g~~-l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~ 1059 (1134)
                      ++. +.++.-..|.+|.+.... ........|...+.|..|++-...+++++ +..+.+|+.+.......+.
T Consensus       183 ~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  183 GKSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             CceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence            987 555778889999998433 33333346778888888885544366555 4569999987544433333

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.12  E-value=0.00015  Score=75.58  Aligned_cols=244  Identities=12%  Similarity=0.141  Sum_probs=137.0

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCC-CEE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG-TLF  433 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~-~~l  433 (1134)
                      +...|..++|||..+-|+..++.+..|.|.|+++......                   +..| ..+++++|.-|. .++
T Consensus       192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss-------------------y~a~-~~~wSC~wDlde~h~I  251 (463)
T KOG1645|consen  192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS-------------------YIAY-NQIWSCCWDLDERHVI  251 (463)
T ss_pred             cchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-------------------eecc-CCceeeeeccCCccee
Confidence            7789999999999887888999999999999998876653                   3334 799999999865 567


Q ss_pred             EEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEe------cCCCceEEEEEeCCCeEEEEECCC--CceeEEec-
Q 001163          434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFS------YPNKQLSVVTCGEDRVIKVWDAVT--GTKQYIFE-  504 (1134)
Q Consensus       434 as~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s------~~~~~~~l~s~s~d~~i~iwd~~~--~~~~~~~~-  504 (1134)
                      ..|-.+|.|.|||++..+.......-+--..+|..++.-      +-|.  +++..+.+  +..|++.-  +.....+. 
T Consensus       252 YaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg--lLv~~lt~--l~f~ei~~s~~~~p~vlel  327 (463)
T KOG1645|consen  252 YAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG--LLVFALTV--LQFYEIVFSAECLPCVLEL  327 (463)
T ss_pred             EEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc--eEEeeehh--hhhhhhhccccCCCccccc
Confidence            778889999999998655332211111123344444432      2344  34444432  45565432  11111111 


Q ss_pred             CCCcCEEEEeccccCCccEEEEecCCCc------EEEE-ecCCCCceeeec-CC-CC------CeeEEEECcCCCEEEEE
Q 001163          505 GHESPVYSICPHHKENIQFIFSTATDGK------IKAW-LYDNLGSRVDYD-AP-GH------SSTMMAYSADGARLFSC  569 (1134)
Q Consensus       505 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~------i~vw-d~~~~~~~~~~~-~~-~~------~v~~~~~s~~~~~l~~~  569 (1134)
                      +..+...++.+++..+ ..|++.-.+..      |-.. |...+..+.... .. +.      .-..+.-.++.++++..
T Consensus       328 e~pG~cismqy~~~sn-h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~  406 (463)
T KOG1645|consen  328 EPPGICISMQYHGVSN-HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVV  406 (463)
T ss_pred             CCCcceeeeeecCccc-eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEe
Confidence            1234444455444332 34444332110      1000 111111111000 00 00      11122334566666665


Q ss_pred             ecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcC
Q 001163          570 GTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT-TKNRFLAAGDEFMIKFWDMD  628 (1134)
Q Consensus       570 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~  628 (1134)
                      +.   ....+.+||..+++.++++....  ++..++... +++-++..-.|..++||..+
T Consensus       407 gd---~tn~lil~D~~s~evvQ~l~~~e--pv~Dicp~~~n~~syLa~LTd~~v~Iyk~e  461 (463)
T KOG1645|consen  407 GD---STNELILQDPHSFEVVQTLALSE--PVLDICPNDTNGSSYLALLTDDRVHIYKNE  461 (463)
T ss_pred             cC---CcceeEEeccchhheeeecccCc--ceeecceeecCCcchhhheecceEEEEecC
Confidence            43   35579999999999999988763  676665543 33333333445677887654

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.04  E-value=0.0048  Score=72.28  Aligned_cols=110  Identities=15%  Similarity=0.115  Sum_probs=66.7

Q ss_pred             cEEEEecCCCcEEEEecCCCCceeeecCCCC------Cee--EEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEe
Q 001163          522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGH------SST--MMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTY  593 (1134)
Q Consensus       522 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~------~v~--~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~  593 (1134)
                      ..++.++.++.|...|..+++....+.....      .+.  .+.+. ++..++.+..    ++.|+.+|.++|+.+..+
T Consensus        62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~----~g~v~AlD~~TG~~~W~~  136 (488)
T cd00216          62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTF----DGRLVALDAETGKQVWKF  136 (488)
T ss_pred             CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecC----CCeEEEEECCCCCEeeee
Confidence            4567777788888888888777766544322      000  11111 2245555543    446999999999999887


Q ss_pred             cCCCCC----ce-EEEEEcCCCCEEEEEe---------CCCeEEEEEcCCCceeEEEec
Q 001163          594 HGLGKR----SV-GVVQFDTTKNRFLAAG---------DEFMIKFWDMDNVNLLASIDA  638 (1134)
Q Consensus       594 ~~~~~~----~v-~~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~  638 (1134)
                      ......    .+ ....+.  +..++.++         .+|.++.+|..+|+.+-....
T Consensus       137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~  193 (488)
T cd00216         137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT  193 (488)
T ss_pred             cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence            654320    01 111222  24455553         368899999999998877654

The alignment model contains an 8-bladed beta-propeller.

>smart00668 CTLH C-terminal to LisH motif

Probab=98.02  E-value=4.8e-06  Score=64.85  Aligned_cols=53  Identities=32%  Similarity=0.565  Sum_probs=42.1

Q ss_pred             cHHHHHHHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHHHHHHHhcCCH
Q 001163           37 NMRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDR   90 (1134)
Q Consensus        37 ~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~   90 (1134)
                      ++..++++|+.|+|++|++.+...........+ .+.|.|++|+|+||++.++.
T Consensus         4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~   56 (58)
T smart00668        4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL   56 (58)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence            367899999999999999999888332222222 38999999999999998764

Alpha-helical motif of unknown function.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.96  E-value=0.0083  Score=69.29  Aligned_cols=251  Identities=14%  Similarity=0.100  Sum_probs=137.9

Q ss_pred             eeEEEEcCCCCeEEEEEeCCC----cEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163          359 VKSMDFHPVQQILLVVGTNMG----DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       359 V~~v~fsp~g~~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la  434 (1134)
                      +....+||||++++.+-+..|    .+++.|+.+|+.+.. .+                 ..  ..-..+.|.+|++.|+
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i-----------------~~--~~~~~~~W~~d~~~~~  185 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GI-----------------EN--PKFSSVSWSDDGKGFF  185 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EE-----------------EE--EESEEEEECTTSSEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cc-----------------cc--cccceEEEeCCCCEEE
Confidence            346789999998776655555    599999999976642 11                 11  1122399999988877


Q ss_pred             EEeCCC-----------EEEEEEccCCceeeeeeeeecCCCC--EEEEEEecCCCceEEEEEeC-C-CeEEEEECCCC--
Q 001163          435 VAYSKH-----------IVHLYTYHGGDELRNHLEIEAHVGS--VNDLAFSYPNKQLSVVTCGE-D-RVIKVWDAVTG--  497 (1134)
Q Consensus       435 s~s~dg-----------~v~iwd~~~~~~~~~~~~l~~h~~~--V~~v~~s~~~~~~~l~s~s~-d-~~i~iwd~~~~--  497 (1134)
                      ....+.           .|+.|++.++..-. ...+.+....  ...+..++|++.+++.+.+. + ..+.+.|+..+  
T Consensus       186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~  264 (414)
T PF02897_consen  186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGS  264 (414)
T ss_dssp             EEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTT
T ss_pred             EEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCC
Confidence            664332           47888887764321 1234443333  57888999999633323322 2 35788888775  


Q ss_pred             --ceeEEecCCCcCEE-EEeccccCCccEEEEec---CCCcEEEEecCCCCc---eeeecCCCCCeeEEEECcCCCEEEE
Q 001163          498 --TKQYIFEGHESPVY-SICPHHKENIQFIFSTA---TDGKIKAWLYDNLGS---RVDYDAPGHSSTMMAYSADGARLFS  568 (1134)
Q Consensus       498 --~~~~~~~~h~~~v~-~~~~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~  568 (1134)
                        .....+......+. .+.. . + +.+++...   .++.|...++.....   ...+..+...+.-..+...+.+|+.
T Consensus       265 ~~~~~~~l~~~~~~~~~~v~~-~-~-~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl  341 (414)
T PF02897_consen  265 PDAKPKLLSPREDGVEYYVDH-H-G-DRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVL  341 (414)
T ss_dssp             SS-SEEEEEESSSS-EEEEEE-E-T-TEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEE
T ss_pred             CcCCcEEEeCCCCceEEEEEc-c-C-CEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEE
Confidence              22333333333333 3332 2 2 23443332   235666677776553   2233334433333334445666666


Q ss_pred             EecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEE--Ee--CCCeEEEEEcCCCceeE
Q 001163          569 CGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLA--AG--DEFMIKFWDMDNVNLLA  634 (1134)
Q Consensus       569 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~--~dg~i~iwd~~~~~~~~  634 (1134)
                      .... ++...|.++++..+...........+.+..+...++++.+..  .|  .-++++.||+.+++...
T Consensus       342 ~~~~-~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~  410 (414)
T PF02897_consen  342 SYRE-NGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL  410 (414)
T ss_dssp             EEEE-TTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred             EEEE-CCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence            5443 457789999999555555555544445666665566554433  22  34678888998887543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.94  E-value=0.0011  Score=74.74  Aligned_cols=158  Identities=11%  Similarity=0.093  Sum_probs=92.8

Q ss_pred             cccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCC
Q 001163          776 AMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKND  855 (1134)
Q Consensus       776 ~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg  855 (1134)
                      .+.+....++++..++++|+..|.|.++.++.. ..+....                ..  -....|...|++++|++|+
T Consensus        76 ~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~-~p~~~~~----------------~t--~~d~~~~~rVTal~Ws~~~  136 (726)
T KOG3621|consen   76 TGITCVRSVSSVEYLVAAGTASGRVSVFQLNKE-LPRDLDY----------------VT--PCDKSHKCRVTALEWSKNG  136 (726)
T ss_pred             cceEEEEEecchhHhhhhhcCCceEEeehhhcc-CCCccee----------------ec--cccccCCceEEEEEecccc
Confidence            345667788999999999999999999977642 1111100                00  1111278899999999999


Q ss_pred             CeEEEee-CCeEEEEEccCC----eEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccce--EEEeccCccC
Q 001163          856 SYVMSAS-GGKISLFNMMTF----KTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE--VKTKLKGHQK  928 (1134)
Q Consensus       856 ~~la~~s-dg~i~lwd~~~~----~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~--~~~~l~~h~~  928 (1134)
                      ..+.+|. .|+|.+-.+.+.    -....+...++.|..+.+..  +.+|++.. -. -.+++...++  .+.+-. ..+
T Consensus       137 ~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVStl-~r-~~Lc~tE~eti~QIG~k~-R~~  211 (726)
T KOG3621|consen  137 MKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVSTL-TR-CILCQTEAETITQIGKKP-RKS  211 (726)
T ss_pred             cEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhhh-hh-hheeecchhHHHHhcCCC-cCC
Confidence            9999998 699888877662    12223334567788888774  44444333 22 2344444332  111111 111


Q ss_pred             -ceEEEEEeeC----CCEEEEEeCCCcEEEEECCC
Q 001163          929 -RITGLAFSNT----LNVLVSSGADSQLCVWSTDG  958 (1134)
Q Consensus       929 -~V~~l~~s~d----~~~l~s~s~Dg~i~iwd~~~  958 (1134)
                       .-...+|-|.    .+-.+.|+.-| .|+|..+-
T Consensus       212 ~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~  245 (726)
T KOG3621|consen  212 LIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADF  245 (726)
T ss_pred             ccccceEEeeccccCCCceEEEecCC-CceEEeec
Confidence             1223445443    34455666666 78897653

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.93  E-value=0.051  Score=63.92  Aligned_cols=61  Identities=13%  Similarity=0.121  Sum_probs=43.1

Q ss_pred             CeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCc
Q 001163          864 GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGH  926 (1134)
Q Consensus       864 g~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h  926 (1134)
                      |.|.-+|+.+++..................  .+.+++.++.||.++.+|..+|+.+..++-.
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g  501 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG  501 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence            458888999998888765332222222222  3447778888999999999999999877654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.92  E-value=0.00021  Score=79.26  Aligned_cols=83  Identities=18%  Similarity=0.321  Sum_probs=68.2

Q ss_pred             CceeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEE
Q 001163          346 PKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM  425 (1134)
Q Consensus       346 ~~~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  425 (1134)
                      ..--+..+.....|.|++++|+.+. ++.|+.||.|.+||...+....                     ..+.-.++.++
T Consensus       249 qrvsvtsipL~s~v~~ca~sp~E~k-LvlGC~DgSiiLyD~~~~~t~~---------------------~ka~~~P~~ia  306 (545)
T PF11768_consen  249 QRVSVTSIPLPSQVICCARSPSEDK-LVLGCEDGSIILYDTTRGVTLL---------------------AKAEFIPTLIA  306 (545)
T ss_pred             eEEEEEEEecCCcceEEecCcccce-EEEEecCCeEEEEEcCCCeeee---------------------eeecccceEEE
Confidence            3344555668999999999999995 5799999999999998764332                     23445788999


Q ss_pred             EcCCCCEEEEEeCCCEEEEEEccCC
Q 001163          426 WSPDGTLFGVAYSKHIVHLYTYHGG  450 (1134)
Q Consensus       426 ~spd~~~las~s~dg~v~iwd~~~~  450 (1134)
                      |+|+|..+++|+..|.+.+||+.-+
T Consensus       307 WHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  307 WHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EcCCCcEEEEEcCCceEEEEEeecC
Confidence            9999999999999999999998654

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=97.92  E-value=1.5e-05  Score=49.54  Aligned_cols=27  Identities=33%  Similarity=0.540  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHhhhcCHHHHHHHHHHhc
Q 001163            6 RELVFLILQFLDEEKFKETVHKLEQDS   32 (1134)
Q Consensus         6 ~e~~~li~q~L~~~g~~~s~~~l~~Es   32 (1134)
                      +++.+||++||.++||.+||.+|.+||
T Consensus         1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen    1 EELNQLIYDYLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence            579999999999999999999999997

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.92  E-value=0.0035  Score=73.38  Aligned_cols=240  Identities=10%  Similarity=0.103  Sum_probs=140.7

Q ss_pred             CeEEEee-CCeEEEEEccCCeEEEEecCCCCC-----e-EEEEEcCCCCcEEEEEe---------CCCcEEEEEcccceE
Q 001163          856 SYVMSAS-GGKISLFNMMTFKTMTTFMPPPPA-----A-TFLAFHPQDNNIIAIGM---------EDSSIQIYNVRVDEV  919 (1134)
Q Consensus       856 ~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~-----v-~~l~~sp~~~~~la~g~---------~dg~i~iwd~~~~~~  919 (1134)
                      ..++.++ ++.|+-+|.++|+.+..+......     + ....+.  + .+++.++         .+|.+.-+|..+|+.
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~  187 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGKL  187 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCce
Confidence            4455555 899999999999999887644321     1 222333  2 3455554         367899999999998


Q ss_pred             EEeccCccC--------------------ceE-EEEEeeCCCEEEEEeCCC------------------cEEEEECCCCc
Q 001163          920 KTKLKGHQK--------------------RIT-GLAFSNTLNVLVSSGADS------------------QLCVWSTDGWE  960 (1134)
Q Consensus       920 ~~~l~~h~~--------------------~V~-~l~~s~d~~~l~s~s~Dg------------------~i~iwd~~~~~  960 (1134)
                      +..+.....                    .|. ..++.+.+..++.++.|+                  .|.-+|.++++
T Consensus       188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~  267 (488)
T cd00216         188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK  267 (488)
T ss_pred             eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence            876643211                    111 234445566777777665                  68888988877


Q ss_pred             cccceeeeecCCCCC----CCCCceEEEE-cCCCC---EEEE-EeeceEEEEeCCCcccceeeccCCCccCEEEEEEccC
Q 001163          961 KQASKFLTIPNGRTA----SALADTRVQF-HLDQT---HLLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCD 1031 (1134)
Q Consensus       961 ~~~~~~~~~~~~~~~----~~~~v~~l~f-s~dg~---~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~d 1031 (1134)
                      .. +.. +.. .+..    ......-... .-+|.   .+++ +.+|.+...|..+|+.+-.....     ...++.+| 
T Consensus       268 ~~-W~~-~~~-~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-----~~~~~~~~-  338 (488)
T cd00216         268 VK-WFY-QTT-PHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-----EQPMAYDP-  338 (488)
T ss_pred             EE-EEe-eCC-CCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-----ccccccCC-
Confidence            32 111 111 1100    0000000011 12343   3444 47899999999999987765421     11233343 


Q ss_pred             CCEEEEE------------------ecCCcEEEeecCCCcceeecCCCcccCCC-CCCCc--eeEEEEecCCCCCEEEEE
Q 001163         1032 SQSIYVA------------------FEEGSVGVLTASTLRLRCRINPTAYLPTN-PSLRV--YPLVIAGNPTDPNQFALG 1090 (1134)
Q Consensus      1032 g~~l~s~------------------s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~-h~~~v--~~~~~~~~p~~~~~l~s~ 1090 (1134)
                       ..++.+                  ..+|.+.-.|+.+|+.+.+.........- -....  .++.+     .++.|+++
T Consensus       339 -~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~-----~g~~v~~g  412 (488)
T cd00216         339 -GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT-----AGNLVFAG  412 (488)
T ss_pred             -ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe-----cCCeEEEE
Confidence             333332                  23678999999999988776643110000 00011  12222     35789999


Q ss_pred             ecCCcEEEEeCCCCCCCccCCCC
Q 001163         1091 LTDGGVYIIEPLEAEGRWGTSPP 1113 (1134)
Q Consensus      1091 ~~Dg~v~vW~~~~~~~~~~~~~~ 1113 (1134)
                      +.||.|+.+|..+++..|...-+
T Consensus       413 ~~dG~l~ald~~tG~~lW~~~~~  435 (488)
T cd00216         413 AADGYFRAFDATTGKELWKFRTP  435 (488)
T ss_pred             CCCCeEEEEECCCCceeeEEECC
Confidence            99999999999999999997543

The alignment model contains an 8-bladed beta-propeller.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.90  E-value=0.0032  Score=67.81  Aligned_cols=288  Identities=13%  Similarity=0.069  Sum_probs=136.5

Q ss_pred             EEEEecCCceeeeecc-CCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEE
Q 001163          781 RLIYTNSGLAILALAS-NAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVM  859 (1134)
Q Consensus       781 ~l~~spdg~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la  859 (1134)
                      .=+|.+||+.|+.++. ||.-.+|-+                    |+.+++..+..-.   .........++++++.++
T Consensus        40 ~~~ft~dG~kllF~s~~dg~~nly~l--------------------DL~t~~i~QLTdg---~g~~~~g~~~s~~~~~~~   96 (386)
T PF14583_consen   40 QNCFTDDGRKLLFASDFDGNRNLYLL--------------------DLATGEITQLTDG---PGDNTFGGFLSPDDRALY   96 (386)
T ss_dssp             S--B-TTS-EEEEEE-TTSS-EEEEE--------------------ETTT-EEEE---S---S-B-TTT-EE-TTSSEEE
T ss_pred             CCCcCCCCCEEEEEeccCCCcceEEE--------------------EcccCEEEECccC---CCCCccceEEecCCCeEE
Confidence            3467889977766554 665555543                    4555555442211   112222466778888876


Q ss_pred             Eee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEc-CCCCcEEEEEeC----------------------CCcEEEEEcc
Q 001163          860 SAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFH-PQDNNIIAIGME----------------------DSSIQIYNVR  915 (1134)
Q Consensus       860 ~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~s-p~~~~~la~g~~----------------------dg~i~iwd~~  915 (1134)
                      -.. +..|+-.|+.+.+....+..+..-+-...|. ..|+..++-.-.                      ...|...|+.
T Consensus        97 Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~  176 (386)
T PF14583_consen   97 YVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK  176 (386)
T ss_dssp             EEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT
T ss_pred             EEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC
Confidence            554 6789999999988766666556555445553 225555443211                      1245556777


Q ss_pred             cceEEEeccCccCceEEEEEeeCCCEEEEEeCC----C-cEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCC
Q 001163          916 VDEVKTKLKGHQKRITGLAFSNTLNVLVSSGAD----S-QLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQT  990 (1134)
Q Consensus       916 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D----g-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~  990 (1134)
                      +|+....+. -..-+..+.|||....++.=+..    . .-+||-+.+.......+.+...     ...+..=-|+|||.
T Consensus       177 tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-----~e~~gHEfw~~DG~  250 (386)
T PF14583_consen  177 TGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-----GESVGHEFWVPDGS  250 (386)
T ss_dssp             T--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-----TEEEEEEEE-TTSS
T ss_pred             CCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-----CcccccccccCCCC
Confidence            776544443 34456788999876655554332    2 2367766543322222211111     14467778999999


Q ss_pred             EEEE-E-----eeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCC----------------cEEEee
Q 001163          991 HLLA-V-----HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEG----------------SVGVLT 1048 (1134)
Q Consensus       991 ~l~~-~-----~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg----------------~i~vwd 1048 (1134)
                      .|.- +     .+..|.-+|..+++......    ...-.....++||++++-=+.|.                .|++++
T Consensus       251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~----~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~  326 (386)
T PF14583_consen  251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLME----MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFD  326 (386)
T ss_dssp             -EEEEEEETTT--EEEEEE-TTT--EEEEEE----E-SEEEEEE-TTSSEEEEEE-------------------EEEEEE
T ss_pred             EEEEEeecCCCCceEEEeeCCCCCCceEEEe----CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEec
Confidence            8776 3     24568888888886543222    22344566688999887433332                466788


Q ss_pred             cCCCcce--eecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCC
Q 001163         1049 ASTLRLR--CRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPL 1102 (1134)
Q Consensus      1049 ~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~ 1102 (1134)
                      +..++..  ++... .+....|...+..-..+|+|++...|.+....|...||-+.
T Consensus       327 ~~~~~~~~l~~h~~-sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~  381 (386)
T PF14583_consen  327 VEAGRFRKLARHDT-SWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE  381 (386)
T ss_dssp             TTTTEEEEEEE--------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred             cccCceeeeeeccC-cceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence            8776643  22221 12112233344556679999544445556667777776554

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.90  E-value=0.00065  Score=77.42  Aligned_cols=185  Identities=12%  Similarity=0.153  Sum_probs=129.4

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC
Q 001163          418 TASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG  497 (1134)
Q Consensus       418 ~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~  497 (1134)
                      .+.++|++++  +++++-|+.+|.|++.+....-  +   +...|...      ..+|.  +++|||.||+|.|-.+-+.
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~---~~~~~s~~------~~~Ge--y~asCS~DGkv~I~sl~~~  103 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--K---TNFDHSSS------ILEGE--YVASCSDDGKVVIGSLFTD  103 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCcc--c---cccccccc------ccCCc--eEEEecCCCcEEEeeccCC
Confidence            3467777775  6799999999999999987642  2   23335544      56788  8999999999999999888


Q ss_pred             ceeEEecCCCcCEEEEecccc---CCccEEEEecCCCcEEEEecCCCCcee--eecCCCCCeeEEEECcCCCEEEEEecC
Q 001163          498 TKQYIFEGHESPVYSICPHHK---ENIQFIFSTATDGKIKAWLYDNLGSRV--DYDAPGHSSTMMAYSADGARLFSCGTN  572 (1134)
Q Consensus       498 ~~~~~~~~h~~~v~~~~~~~~---~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~  572 (1134)
                      +...++. ...++.+++++|+   .....+++|+.-| +.++.-.-.+...  .+....++|.++.|  .|+++|-+...
T Consensus       104 ~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~  179 (846)
T KOG2066|consen  104 DEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDD  179 (846)
T ss_pred             ccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCC
Confidence            8877665 4568899998776   2236788999888 7776433222222  23444568999998  47788888755


Q ss_pred             CCCCeEEEEEeCCCCeeEEEecCCCCC-----ceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 001163          573 KEGESYLVEWNESEGAVKRTYHGLGKR-----SVGVVQFDTTKNRFLAAGDEFMIKFWDMD  628 (1134)
Q Consensus       573 ~~~~~~i~~wd~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  628 (1134)
                      |     |++||..+++.+..++.....     ....+.|.++.+.++--+  .+|+|..++
T Consensus       180 G-----v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~--d~v~i~~I~  233 (846)
T KOG2066|consen  180 G-----VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWG--DSVKICSIK  233 (846)
T ss_pred             C-----cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecC--CeEEEEEEe
Confidence            4     999999999888776654431     123467877654444333  367777766

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.87  E-value=0.0031  Score=71.12  Aligned_cols=195  Identities=14%  Similarity=0.168  Sum_probs=120.6

Q ss_pred             eecCCCCEEEEEEecCCCceEEEEEeCCC--eEEEEECCCCceeEEe--cCCCcCEEEEeccccCCccEEEEecCCCcEE
Q 001163          459 IEAHVGSVNDLAFSYPNKQLSVVTCGEDR--VIKVWDAVTGTKQYIF--EGHESPVYSICPHHKENIQFIFSTATDGKIK  534 (1134)
Q Consensus       459 l~~h~~~V~~v~~s~~~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~  534 (1134)
                      +..-...+..-+|+|+++.+..++-...+  .+.++|+.+++....+  .++..   .-.|+|++. .++++...||...
T Consensus       188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~---~P~fspDG~-~l~f~~~rdg~~~  263 (425)
T COG0823         188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG---APAFSPDGS-KLAFSSSRDGSPD  263 (425)
T ss_pred             ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccC---CccCCCCCC-EEEEEECCCCCcc
Confidence            33344567778999999964444333333  5999999988765443  34332   235554442 4556667777755


Q ss_pred             EE--ecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCE
Q 001163          535 AW--LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNR  612 (1134)
Q Consensus       535 vw--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  612 (1134)
                      +|  |+..... ..+....+.-..-.|+|||+.++..+ |+.+...|.++|.+.+...+....... . ..-.++|||++
T Consensus       264 iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G~p~I~~~~~~g~~~~riT~~~~~-~-~~p~~SpdG~~  339 (425)
T COG0823         264 IYLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTS-DRGGRPQIYLYDLEGSQVTRLTFSGGG-N-SNPVWSPDGDK  339 (425)
T ss_pred             EEEEcCCCCcc-eecccCCccccCccCCCCCCEEEEEe-CCCCCcceEEECCCCCceeEeeccCCC-C-cCccCCCCCCE
Confidence            55  5554442 22333333334678999999999886 556777899999887765433222222 1 25679999999


Q ss_pred             EEEEeC-CCe--EEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCC
Q 001163          613 FLAAGD-EFM--IKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN  664 (1134)
Q Consensus       613 l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg  664 (1134)
                      ++..+. +|.  |.+.|+.++..++.+...   .....-.|.++|..+...+..+
T Consensus       340 i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~---~~~e~ps~~~ng~~i~~~s~~~  391 (425)
T COG0823         340 IVFESSSGGQWDIDKNDLASGGKIRILTST---YLNESPSWAPNGRMIMFSSGQG  391 (425)
T ss_pred             EEEEeccCCceeeEEeccCCCCcEEEcccc---ccCCCCCcCCCCceEEEeccCC
Confidence            988773 344  677777766655544432   2334567888888777655443

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=97.78  E-value=3.4e-05  Score=52.24  Aligned_cols=32  Identities=34%  Similarity=0.517  Sum_probs=29.7

Q ss_pred             chHHHHHHHHHHhhhcCHHHHHHHHHHhcCCC
Q 001163            4 LSRELVFLILQFLDEEKFKETVHKLEQDSGFF   35 (1134)
Q Consensus         4 ~~~e~~~li~q~L~~~g~~~s~~~l~~Esg~~   35 (1134)
                      .++++.++|+|||..+||.+|+.+|++|+|+.
T Consensus         2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~   33 (34)
T smart00667        2 SRSELNRLILEYLLRNGYEETAETLQKESGLS   33 (34)
T ss_pred             cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence            36789999999999999999999999999975

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.77  E-value=0.0077  Score=67.27  Aligned_cols=253  Identities=15%  Similarity=0.175  Sum_probs=131.2

Q ss_pred             CeeEEEEcCCCCeEEEEEeCCCcEEEEecCCcccee------e------------eceeeeeccccCcc------ccccc
Q 001163          358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIA------V------------KSFKVWELGACSMP------LQASL  413 (1134)
Q Consensus       358 ~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~------~------------~~~~~~~~~~~~~~------~~~~~  413 (1134)
                      .|+.+.|+++...| |+|...|.|.||.+...+.-.      .            ..-++-|+.....+      .+..+
T Consensus         3 ~v~~vs~a~~t~El-av~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPETLEL-AVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETTTTEE-EEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCCCceE-EEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            58899999987654 789999999999986553321      0            01223333321111      12224


Q ss_pred             cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeec------CCCCEEEEEEec---CCC---ceEEE
Q 001163          414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEA------HVGSVNDLAFSY---PNK---QLSVV  481 (1134)
Q Consensus       414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~------h~~~V~~v~~s~---~~~---~~~l~  481 (1134)
                      +....++|++++.| |=-++|.|..+|.+.|.|++....+... .+..      ....|+++.|+-   ++.   .+.++
T Consensus        82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~-~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNE-NIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEE-EGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeec-cccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            55668999999997 6679999999999999999887765432 2333      344688898872   222   24788


Q ss_pred             EEeCCCeEEEEECC-C--Ccee----EEecCCCcCEEEEeccccCCc-------------------cEEEEecCCCcEEE
Q 001163          482 TCGEDRVIKVWDAV-T--GTKQ----YIFEGHESPVYSICPHHKENI-------------------QFIFSTATDGKIKA  535 (1134)
Q Consensus       482 s~s~d~~i~iwd~~-~--~~~~----~~~~~h~~~v~~~~~~~~~~~-------------------~~l~s~s~dg~i~v  535 (1134)
                      .|...|.+.+|.+. .  +...    .....+.++|..|.......|                   +-++....+..+++
T Consensus       160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv  239 (395)
T PF08596_consen  160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV  239 (395)
T ss_dssp             EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred             EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence            99999999999875 1  2221    122246677766653211110                   12333444688999


Q ss_pred             EecCCCCceeeecCCCCCeeEEEEC-----cCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCC---CceEEEEEc
Q 001163          536 WLYDNLGSRVDYDAPGHSSTMMAYS-----ADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK---RSVGVVQFD  607 (1134)
Q Consensus       536 wd~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~---~~v~~~~~~  607 (1134)
                      +...+.+...+..........+.+-     ..+..|++...    ++.++++.+..-+.+..+.....   ..+...+++
T Consensus       240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~----~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis  315 (395)
T PF08596_consen  240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN----NGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS  315 (395)
T ss_dssp             E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET----TSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred             EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEEC----CCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence            9887766555444222233344442     24445555543    44599999998888877665321   122335566


Q ss_pred             CCCCEEEEEe
Q 001163          608 TTKNRFLAAG  617 (1134)
Q Consensus       608 ~~~~~l~~~~  617 (1134)
                      ++|..++-.+
T Consensus       316 ~~Gdi~~~~g  325 (395)
T PF08596_consen  316 RNGDIFYWTG  325 (395)
T ss_dssp             TTS-EEEE-S
T ss_pred             CCCCEEEEeC
Confidence            6665554443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.76  E-value=0.0092  Score=66.63  Aligned_cols=241  Identities=13%  Similarity=0.090  Sum_probs=135.6

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceee----------------------------------------eeeee
Q 001163          420 SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELR----------------------------------------NHLEI  459 (1134)
Q Consensus       420 ~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~----------------------------------------~~~~l  459 (1134)
                      .|+++.|+++..-||+|...|.|.||.....+...                                        +..-+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            68999999999999999999999999765332110                                        11113


Q ss_pred             ecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEe--cC------CCcCEEEEecc---ccCCc---cEEE
Q 001163          460 EAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF--EG------HESPVYSICPH---HKENI---QFIF  525 (1134)
Q Consensus       460 ~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~--~~------h~~~v~~~~~~---~~~~~---~~l~  525 (1134)
                      ....++|++++.|.-|   +++.|..+|.+.|.|++....++.-  ..      ....|+++.|.   ...|+   -.++
T Consensus        83 ~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             ---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             eccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            3456899999998666   7999999999999999887777652  22      23457777664   23333   5788


Q ss_pred             EecCCCcEEEEecCC-CCceee------ecCCCCCeeEEE-ECcC-C--------------------CEEEEEecCCCCC
Q 001163          526 STATDGKIKAWLYDN-LGSRVD------YDAPGHSSTMMA-YSAD-G--------------------ARLFSCGTNKEGE  576 (1134)
Q Consensus       526 s~s~dg~i~vwd~~~-~~~~~~------~~~~~~~v~~~~-~s~~-~--------------------~~l~~~~~~~~~~  576 (1134)
                      +|...|.+.+|.+.. ....+.      ...+..++..+. ++.+ |                    .++++++     +
T Consensus       160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-----e  234 (395)
T PF08596_consen  160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-----E  234 (395)
T ss_dssp             EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE------S
T ss_pred             EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-----c
Confidence            899999999998752 211111      112333444333 2211 1                    1344444     2


Q ss_pred             eEEEEEeCCCCeeEEEecCCCCCceEEEEEc-----CCCCEEEEEeCCCeEEEEEcCCCceeEEEecCC--CCCCcceEE
Q 001163          577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFD-----TTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG--GLQASPCIR  649 (1134)
Q Consensus       577 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~v~  649 (1134)
                      ..++++...+.+...+..... .....+++-     ..+..|++-..+|.|+++.+..-+.+..+....  ....+....
T Consensus       235 ~~irv~~~~~~k~~~K~~~~~-~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss  313 (395)
T PF08596_consen  235 SDIRVFKPPKSKGAHKSFDDP-FLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS  313 (395)
T ss_dssp             SEEEEE-TT---EEEEE-SS--EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred             cceEEEeCCCCcccceeeccc-cccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence            249999988887666554221 123334442     345677888899999999999999888877532  112345677


Q ss_pred             EcCCCcEEEEEECCCcEEEEE
Q 001163          650 FNKEGILLAVSTNDNGIKILA  670 (1134)
Q Consensus       650 ~sp~~~~l~~~~~dg~i~iw~  670 (1134)
                      ++++|..++-.+.. .+.++.
T Consensus       314 is~~Gdi~~~~gps-E~~l~s  333 (395)
T PF08596_consen  314 ISRNGDIFYWTGPS-EIQLFS  333 (395)
T ss_dssp             E-TTS-EEEE-SSS-EEEEEE
T ss_pred             ECCCCCEEEEeCcc-cEEEEE
Confidence            78888876655443 444443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.76  E-value=0.0027  Score=71.77  Aligned_cols=219  Identities=17%  Similarity=0.162  Sum_probs=117.8

Q ss_pred             CCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEec
Q 001163          844 DAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKL  923 (1134)
Q Consensus       844 ~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l  923 (1134)
                      .....+.++|+|++++++++|...|+.....+....     +.....+|.+ .++ +|+-...+.|.|+.--+.+....+
T Consensus        33 ~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~i  105 (443)
T PF04053_consen   33 IYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKSI  105 (443)
T ss_dssp             S--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT---
T ss_pred             cCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceEE
Confidence            346789999999999999999999998655444332     3456788987 555 666666889999743333332233


Q ss_pred             cCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEE
Q 001163          924 KGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIY 1003 (1134)
Q Consensus       924 ~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iw 1003 (1134)
                      +.. ..+..+-.   |.+|...+.+ .|.+||+.+++     .+....-     ..|..+.|+++|.+++...+.++.|+
T Consensus       106 ~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~-----~i~~i~v-----~~vk~V~Ws~~g~~val~t~~~i~il  170 (443)
T PF04053_consen  106 KLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGK-----LIRRIDV-----SAVKYVIWSDDGELVALVTKDSIYIL  170 (443)
T ss_dssp             --S-S-EEEEE----SSSEEEEETT-EEEEE-TTT-------EEEEESS------E-EEEEE-TTSSEEEEE-S-SEEEE
T ss_pred             cCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcc-----eeeEEec-----CCCcEEEEECCCCEEEEEeCCeEEEE
Confidence            321 12333332   8888877655 79999999865     2222221     23789999999999999888899998


Q ss_pred             eCCCc-----------ccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcc--eeecCCCcccCCCCCC
Q 001163         1004 EAPKL-----------ECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRL--RCRINPTAYLPTNPSL 1070 (1134)
Q Consensus      1004 d~~~~-----------~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~--~~~~~~~~~~~~~h~~ 1070 (1134)
                      +.+..           +.+..+.  .-...|.+.+|..| -+++|...  .++.  +-+|+.  ++.+.          .
T Consensus       171 ~~~~~~~~~~~~~g~e~~f~~~~--E~~~~IkSg~W~~d-~fiYtT~~--~lkY--l~~Ge~~~i~~ld----------~  233 (443)
T PF04053_consen  171 KYNLEAVAAIPEEGVEDAFELIH--EISERIKSGCWVED-CFIYTTSN--HLKY--LVNGETGIIAHLD----------K  233 (443)
T ss_dssp             EE-HHHHHHBTTTB-GGGEEEEE--EE-S--SEEEEETT-EEEEE-TT--EEEE--EETTEEEEEEE-S----------S
T ss_pred             EecchhcccccccCchhceEEEE--EecceeEEEEEEcC-EEEEEcCC--eEEE--EEcCCcceEEEcC----------C
Confidence            86543           0122221  11457888888766 44444432  5665  333332  32332          2


Q ss_pred             CceeEEEEecCCCCCEEEEEecCCcEEEEeCCCC
Q 001163         1071 RVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEA 1104 (1134)
Q Consensus      1071 ~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~ 1104 (1134)
                      .++-+  .+.| ..+.+.....|+.|..+.++-.
T Consensus       234 ~~yll--gy~~-~~~~ly~~Dr~~~v~~~~ld~~  264 (443)
T PF04053_consen  234 PLYLL--GYLP-KENRLYLIDRDGNVISYELDLS  264 (443)
T ss_dssp             --EEE--EEET-TTTEEEEE-TT--EEEEE--HH
T ss_pred             ceEEE--EEEc-cCCEEEEEECCCCEEEEEECHH
Confidence            34444  3445 3578888889999998887643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.75  E-value=0.014  Score=66.19  Aligned_cols=202  Identities=14%  Similarity=0.151  Sum_probs=111.7

Q ss_pred             EEEEcCCCCeEEEeeCC------------eEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcc
Q 001163          848 CFALSKNDSYVMSASGG------------KISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVR  915 (1134)
Q Consensus       848 ~v~~s~dg~~la~~sdg------------~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~  915 (1134)
                      .++.+|.|..+|...|.            .|+||+. .|+.+.++.-..+.+.++.|+. +. .|++-..||.+++||+.
T Consensus        33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~-~e-~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTD-DE-ELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             eEEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECC-CC-eEEEEEcCCEEEEEeCC
Confidence            34555666666655433            5999987 5666776554448999999997 44 55567789999999986


Q ss_pred             cceE-------EEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCC--CCCCceE-EEE
Q 001163          916 VDEV-------KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTA--SALADTR-VQF  985 (1134)
Q Consensus       916 ~~~~-------~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~-l~f  985 (1134)
                       |+.       +....-....+....+..+|-.+.  ..++.+.+-+--............+.....  ....... ..+
T Consensus       110 -G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l  186 (410)
T PF04841_consen  110 -GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL  186 (410)
T ss_pred             -CceeechhhhccccCcccccccccccCCCCEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEe
Confidence             333       111122223333334444563333  334444433221111000000011111000  0001111 345


Q ss_pred             cCCCCEEEE-EeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCC
Q 001163          986 HLDQTHLLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPT 1061 (1134)
Q Consensus       986 s~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~ 1061 (1134)
                      +.+....+. ..++.+.+.+....+.   +   ...+++..|++||+|++||.-..+|.+.|.+.+-.+.++.+...
T Consensus       187 ~~~~~~~i~~~~g~~i~~i~~~~~~~---i---~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~  257 (410)
T PF04841_consen  187 SSDRVVEILLANGETIYIIDENSFKQ---I---DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD  257 (410)
T ss_pred             ecCcceEEEEecCCEEEEEEcccccc---c---cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC
Confidence            555554444 4556666554433221   1   12468999999999999999999999999987777766666533

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.68  E-value=0.02  Score=57.64  Aligned_cols=254  Identities=12%  Similarity=0.133  Sum_probs=139.7

Q ss_pred             EEEEEcCCCCE-EEEEeCCCe-EEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECC-----CcEEEEEccCC
Q 001163          602 GVVQFDTTKNR-FLAAGDEFM-IKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND-----NGIKILANADG  674 (1134)
Q Consensus       602 ~~~~~~~~~~~-l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d-----g~i~iw~~~~~  674 (1134)
                      ..++|+|.... ++.+-.-|+ ..++|....+...++.........-.-.|||||.+|+..-+|     |.|-|||...+
T Consensus        71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~  150 (366)
T COG3490          71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG  150 (366)
T ss_pred             CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence            45778876644 344444444 578999988887777654332233346799999999876544     67778877654


Q ss_pred             ceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccccccccccccee
Q 001163          675 IRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIW  754 (1134)
Q Consensus       675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw  754 (1134)
                      ...+-.+..                                                                       
T Consensus       151 fqrvgE~~t-----------------------------------------------------------------------  159 (366)
T COG3490         151 FQRVGEFST-----------------------------------------------------------------------  159 (366)
T ss_pred             cceeccccc-----------------------------------------------------------------------
Confidence            333222221                                                                       


Q ss_pred             eecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEee-ecCCCCCCcccccccCCCCcccCCCCCccc
Q 001163          755 KLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLW-KWPRNERNSTGKATTNQAPQLWQPPSGILM  833 (1134)
Q Consensus       755 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  833 (1134)
                                          |.-....+.+.+||+.++.+..  -|..- ++...+.+.+....   .+-+.|..+|.++
T Consensus       160 --------------------~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNldsMeP---Slvlld~atG~li  214 (366)
T COG3490         160 --------------------HGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLDSMEP---SLVLLDAATGNLI  214 (366)
T ss_pred             --------------------CCcCcceeEEecCCcEEEEeCC--ceecccccCccccchhhcCc---cEEEEeccccchh
Confidence                                2223345678889988877653  34433 22222222211110   1223354555544


Q ss_pred             cc-CCCCCCCCCCeeEEEEcCCCCeEEEee-CCe-----EEEEEccCCeEEEEecCC-------CCCeEEEEEcCCCCcE
Q 001163          834 TN-DISDTNPEDAVPCFALSKNDSYVMSAS-GGK-----ISLFNMMTFKTMTTFMPP-------PPAATFLAFHPQDNNI  899 (1134)
Q Consensus       834 ~~-~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~-----i~lwd~~~~~~~~~~~~~-------~~~v~~l~~sp~~~~~  899 (1134)
                      .. .++..-+.-.|+.++..+||+.++.+. .|.     --+=-...++.+.-+...       ...|-+++...+++-.
T Consensus       215 ekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV  294 (366)
T COG3490         215 EKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLV  294 (366)
T ss_pred             hhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeE
Confidence            32 222112456788999999998877664 221     111112234444443322       2347788888744444


Q ss_pred             EEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 001163          900 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS  955 (1134)
Q Consensus       900 la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd  955 (1134)
                      .++.-..+...+||..+|.++..-.--  ....++-  ...-++..+.+|.+.+++
T Consensus       295 ~lTSP~GN~~vi~da~tG~vv~~a~l~--daaGva~--~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         295 ALTSPRGNRAVIWDAATGAVVSEAALP--DAAGVAA--AKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             EEecCCCCeEEEEEcCCCcEEeccccc--cccccee--ccCceEEecCCceEEecc
Confidence            444445567889999999877543211  1222332  333355556678888774

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.67  E-value=1.8e-05  Score=87.11  Aligned_cols=205  Identities=14%  Similarity=0.213  Sum_probs=130.4

Q ss_pred             cCCCeeEEEEcCCCC-eEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC-CCCE
Q 001163          355 QGSAVKSMDFHPVQQ-ILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTL  432 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~-~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~  432 (1134)
                      ....+.|++++.+.+ -++++|..+|.|.+-.+....--.                 ..+..+|....++++|++ |.+.
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs-----------------~E~tp~~ar~Ct~lAwneLDtn~  117 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSS-----------------AEVTPGYARPCTSLAWNELDTNH  117 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhccccCceEEeecCCccccc-----------------ceecccccccccccccccccHHH
Confidence            445677888776544 688999999999998876543210                 113467889999999999 7788


Q ss_pred             EEEEe----CCCEEEEEEccCCce-eeeeeeeec-CCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCce-eEEecC
Q 001163          433 FGVAY----SKHIVHLYTYHGGDE-LRNHLEIEA-HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK-QYIFEG  505 (1134)
Q Consensus       433 las~s----~dg~v~iwd~~~~~~-~~~~~~l~~-h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~  505 (1134)
                      ||.|-    .|..+.|||+.++-. .+....+.+ -.....+++|..+.+  ++.+|...+.+.++|++.... ...+  
T Consensus       118 LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv--  193 (783)
T KOG1008|consen  118 LAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV--  193 (783)
T ss_pred             HHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh--
Confidence            88873    366799999988621 111111222 344567899997777  788999889999999873321 2222  


Q ss_pred             CCcCEEEEeccccCCccEEEEecCCCcEEEEe-cCCCCceeeecCCC-----CCeeEEEECcCCC-EEEEEecCCCCCeE
Q 001163          506 HESPVYSICPHHKENIQFIFSTATDGKIKAWL-YDNLGSRVDYDAPG-----HSSTMMAYSADGA-RLFSCGTNKEGESY  578 (1134)
Q Consensus       506 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd-~~~~~~~~~~~~~~-----~~v~~~~~s~~~~-~l~~~~~~~~~~~~  578 (1134)
                      .+..+..+.+.|- .++++++-. ||.|-+|| ....+.......+.     ..+..++|+|... .+++...+   ..+
T Consensus       194 nTk~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~Rd---S~t  268 (783)
T KOG1008|consen  194 NTKYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRD---SIT  268 (783)
T ss_pred             hhhhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccC---cce
Confidence            1223444454441 225666555 99999999 33333222211111     2588999999654 44444432   456


Q ss_pred             EEEEeCC
Q 001163          579 LVEWNES  585 (1134)
Q Consensus       579 i~~wd~~  585 (1134)
                      |+++|+.
T Consensus       269 Irlydi~  275 (783)
T KOG1008|consen  269 IRLYDIC  275 (783)
T ss_pred             EEEeccc
Confidence            8888875

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.64  E-value=0.089  Score=61.90  Aligned_cols=150  Identities=8%  Similarity=0.034  Sum_probs=89.2

Q ss_pred             cEEEEEcccceEEEeccCccCceEE---------EEEeeCCC---EEEEEeCCCcEEEEECCCCccccce------ee--
Q 001163          908 SIQIYNVRVDEVKTKLKGHQKRITG---------LAFSNTLN---VLVSSGADSQLCVWSTDGWEKQASK------FL--  967 (1134)
Q Consensus       908 ~i~iwd~~~~~~~~~l~~h~~~V~~---------l~~s~d~~---~l~s~s~Dg~i~iwd~~~~~~~~~~------~~--  967 (1134)
                      +|.-.|++||+..-.++.....+.+         +.+..+|+   .++.+..+|.+.+.|-.+++.....      ..  
T Consensus       272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~  351 (527)
T TIGR03075       272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT  351 (527)
T ss_pred             eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence            5777889999988777652222221         22224665   7889999999999999998753100      00  


Q ss_pred             eec--CCC-----------------------CCCCCCceEEEEcCCCCEEEE-Eee------------------------
Q 001163          968 TIP--NGR-----------------------TASALADTRVQFHLDQTHLLA-VHE------------------------  997 (1134)
Q Consensus       968 ~~~--~~~-----------------------~~~~~~v~~l~fs~dg~~l~~-~~d------------------------  997 (1134)
                      ++.  .+.                       ......-..++++|+..++++ ..+                        
T Consensus       352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~  431 (527)
T TIGR03075       352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT  431 (527)
T ss_pred             ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence            000  000                       000000123567776666655 211                        


Q ss_pred             ---------ceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCC
Q 001163          998 ---------TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINP 1060 (1134)
Q Consensus       998 ---------~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~ 1060 (1134)
                               +.|.-+|+.+++..-......  ....+. +.-.|.+++.++.||.++.+|..||+.+.+...
T Consensus       432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~--p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~  500 (527)
T TIGR03075       432 IKPPPDDHMGSLIAWDPITGKIVWEHKEDF--PLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT  500 (527)
T ss_pred             cCCCCCCCceeEEEEeCCCCceeeEecCCC--CCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence                     357778888887766554211  111121 223566777888899999999999999987764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.63  E-value=0.022  Score=58.81  Aligned_cols=191  Identities=7%  Similarity=0.105  Sum_probs=110.6

Q ss_pred             CCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001163          356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV  435 (1134)
Q Consensus       356 ~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las  435 (1134)
                      ...++.++|+|+...|+|+....+.|...+.+ |+.+....                 +.+ .+..-.|++..++.++++
T Consensus        21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~vl~   81 (248)
T PF06977_consen   21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP-----------------LDG-FGDYEGITYLGNGRYVLS   81 (248)
T ss_dssp             -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE------------------SS--SSEEEEEE-STTEEEEE
T ss_pred             cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe-----------------CCC-CCCceeEEEECCCEEEEE
Confidence            45699999999988899999999999999974 66665422                 233 357788999888888887


Q ss_pred             EeCCCEEEEEEccCCce---eee--eeeee---cCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCC---CceeEE--
Q 001163          436 AYSKHIVHLYTYHGGDE---LRN--HLEIE---AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT---GTKQYI--  502 (1134)
Q Consensus       436 ~s~dg~v~iwd~~~~~~---~~~--~~~l~---~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~---~~~~~~--  502 (1134)
                      --.++.+.+.++.....   ...  ...+.   .+...+-.++|.+.++.  |+.+-...-..++.+..   +..+..  
T Consensus        82 ~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~~~  159 (248)
T PF06977_consen   82 EERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFVSD  159 (248)
T ss_dssp             ETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred             EcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceeecc
Confidence            77799999999843221   111  11111   34566999999999885  44445555555655443   222211  


Q ss_pred             ------ecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCC---------CCeeEEEECcCCCEEE
Q 001163          503 ------FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG---------HSSTMMAYSADGARLF  567 (1134)
Q Consensus       503 ------~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~  567 (1134)
                            .......+.++++++. .+++++.......|..+|. .++....+....         .+--.++|.++|+..+
T Consensus       160 ~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI  237 (248)
T PF06977_consen  160 DQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI  237 (248)
T ss_dssp             -HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred             ccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence                  1123445788888865 4478888888888988884 344433333222         2567899999997666


Q ss_pred             EE
Q 001163          568 SC  569 (1134)
Q Consensus       568 ~~  569 (1134)
                      +.
T Consensus       238 vs  239 (248)
T PF06977_consen  238 VS  239 (248)
T ss_dssp             EE
T ss_pred             Ec
Confidence            64

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.62  E-value=0.012  Score=66.37  Aligned_cols=204  Identities=14%  Similarity=0.173  Sum_probs=144.0

Q ss_pred             eeEEEEcCCCCeEEEee--CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeC---CCcEEEEEcccceEE
Q 001163          846 VPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGME---DSSIQIYNVRVDEVK  920 (1134)
Q Consensus       846 v~~v~~s~dg~~la~~s--dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~---dg~i~iwd~~~~~~~  920 (1134)
                      -..+++++++..+....  ++.|.+.|..+.+....... ......++++| +++.+.++..   ++++.+.|..+++.+
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-G~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~  153 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-GLGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVT  153 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-ccCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEE
Confidence            45778888888665554  68899999877776666542 22677899999 5655554444   689999999998888


Q ss_pred             EeccCccCceEEEEEeeCCCEEEEEe-CCCcEEEEECCCCccccceee--eecCCCCCCCCCceEEEEcCCCCEEEEEee
Q 001163          921 TKLKGHQKRITGLAFSNTLNVLVSSG-ADSQLCVWSTDGWEKQASKFL--TIPNGRTASALADTRVQFHLDQTHLLAVHE  997 (1134)
Q Consensus       921 ~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d  997 (1134)
                      .....-..+ ..++++|+|..++.+. .++.|.+.|.++..... ...  ....+     .....+.+++||.++.+..+
T Consensus       154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~-----~~P~~i~v~~~g~~~yV~~~  226 (381)
T COG3391         154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVG-----TGPAGIAVDPDGNRVYVAND  226 (381)
T ss_pred             EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccC-----CCCceEEECCCCCEEEEEec
Confidence            775544344 8899999999666554 78899999977744221 000  01111     23567999999998877422


Q ss_pred             ----ceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecC-CcEEEeecCCCcceeecC
Q 001163          998 ----TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEE-GSVGVLTASTLRLRCRIN 1059 (1134)
Q Consensus       998 ----~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D-g~i~vwd~~~~~~~~~~~ 1059 (1134)
                          +.+...|..++.....-...+-. ....+.++|+|+++.+.... +.+.+-|..+........
T Consensus       227 ~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~  292 (381)
T COG3391         227 GSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP  292 (381)
T ss_pred             cCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence                58899999888877663322222 56678999999998887544 889999998887766544

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.52  E-value=0.013  Score=69.21  Aligned_cols=214  Identities=10%  Similarity=0.026  Sum_probs=113.6

Q ss_pred             CCCeEEEEEcCCCCcEEEEEe------CCC--cEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCc-EEEE
Q 001163          884 PPAATFLAFHPQDNNIIAIGM------EDS--SIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQ-LCVW  954 (1134)
Q Consensus       884 ~~~v~~l~~sp~~~~~la~g~------~dg--~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~-i~iw  954 (1134)
                      ...+...+++| +|+.+|...      .|.  .|.+++. .+.......+.  ..+.-.|+|||+.|++...... +++.
T Consensus       349 ~~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~  424 (591)
T PRK13616        349 MGNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVI  424 (591)
T ss_pred             ccCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEe
Confidence            34678999999 777666554      244  4555554 23222222332  3788899999988887753312 2222


Q ss_pred             ECCCCccccceeeeecCCCC--CCCCCceEEEEcCCCCEEEEEeeceEEE---EeCCCccccee-----eccCCCccCEE
Q 001163          955 STDGWEKQASKFLTIPNGRT--ASALADTRVQFHLDQTHLLAVHETQIAI---YEAPKLECLKQ-----FVPREASGPIT 1024 (1134)
Q Consensus       955 d~~~~~~~~~~~~~~~~~~~--~~~~~v~~l~fs~dg~~l~~~~d~~i~i---wd~~~~~~~~~-----~~~~~h~~~v~ 1024 (1134)
                      +-....  ....+.+..+..  .....|..+.|||||+.++...+++|++   -....|+ ...     +. .+-...+.
T Consensus       425 ~~~~~g--ql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~~l~-~~l~~~~~  500 (591)
T PRK13616        425 RDPATG--QLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPREVG-PGLGDTAV  500 (591)
T ss_pred             ccCCCc--eEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccEEee-cccCCccc
Confidence            211100  000011111000  0124699999999999999966788887   4544554 111     11 12133468


Q ss_pred             EEEEccCCCEEEEEecCCcEEEeecCC-CcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCC
Q 001163         1025 HATYSCDSQSIYVAFEEGSVGVLTAST-LRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1103 (1134)
Q Consensus      1025 ~~~~s~dg~~l~s~s~Dg~i~vwd~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~ 1103 (1134)
                      ++.|..++.++ ++..++...+|.+.- |.....+. ..    +....+.++  +-++   ..++.+..+|.+.+=.-..
T Consensus       501 ~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~-~~----n~~~~v~~v--aa~~---~~iyv~~~~g~~~l~~~~~  569 (591)
T PRK13616        501 SLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALP-SR----NLSAPVVAV--AASP---STVYVTDARAVLQLPNSDS  569 (591)
T ss_pred             cceEecCCEEE-EEecCCCCceEEEecCCccccccC-CC----CccCceEEE--ecCC---ceEEEEcCCceEEecCCCC
Confidence            89999999965 455555444555322 22111111 10    123444444  4333   3566677777444332333


Q ss_pred             CCCCccCCCCCCC
Q 001163         1104 AEGRWGTSPPNEN 1116 (1134)
Q Consensus      1104 ~~~~~~~~~~~~~ 1116 (1134)
                      .+.-|...|+..+
T Consensus       570 ~~~~W~ev~~l~g  582 (591)
T PRK13616        570 GDQYWREVPGLMG  582 (591)
T ss_pred             CCCCceECccccC
Confidence            4456988887765

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.51  E-value=0.027  Score=58.22  Aligned_cols=201  Identities=10%  Similarity=0.073  Sum_probs=112.2

Q ss_pred             CCCCeeEEEEcCCCCeEEEee--CCeEEEEEccCCeEEEEecCC-CCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccce
Q 001163          842 PEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMPP-PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE  918 (1134)
Q Consensus       842 h~~~v~~v~~s~dg~~la~~s--dg~i~lwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~  918 (1134)
                      -...+..++|+|+...|++..  .+.|..++. +|+.++.+.-. .+..-.+++.. ++.++++--.++.+.++++....
T Consensus        20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~   97 (248)
T PF06977_consen   20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDDT   97 (248)
T ss_dssp             --S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE----
T ss_pred             ccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEeccc
Confidence            455699999999876555554  477888886 57888876533 36688899987 77777766668999999984321


Q ss_pred             ------EEEec-----cCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCC--C-cccccee-eeecCCCCCCCCCceEE
Q 001163          919 ------VKTKL-----KGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDG--W-EKQASKF-LTIPNGRTASALADTRV  983 (1134)
Q Consensus       919 ------~~~~l-----~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~--~-~~~~~~~-~~~~~~~~~~~~~v~~l  983 (1134)
                            ....+     ..+...+-.++|.+.++.|+.+-+..-..++.+..  . ....... ..... .......+..+
T Consensus        98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~S~l  176 (248)
T PF06977_consen   98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD-DKLFVRDLSGL  176 (248)
T ss_dssp             TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH--HT--SS---EE
T ss_pred             cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccc-ccceeccccce
Confidence                  11111     13556688999999988888888877777887764  1 1110000 00110 00011347889


Q ss_pred             EEcCCCCEEEE-E-eeceEEEEeCCCcccceeeccCC--C-----ccCEEEEEEccCCCEEEEEecCCcEEEe
Q 001163          984 QFHLDQTHLLA-V-HETQIAIYEAPKLECLKQFVPRE--A-----SGPITHATYSCDSQSIYVAFEEGSVGVL 1047 (1134)
Q Consensus       984 ~fs~dg~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~--h-----~~~v~~~~~s~dg~~l~s~s~Dg~i~vw 1047 (1134)
                      ++.|....|.+ + .+..|.++| .+|+.+..+....  |     -...-.|+|.++|++.+ .++-+..++|
T Consensus       177 ~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f  247 (248)
T PF06977_consen  177 SYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF  247 (248)
T ss_dssp             EEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred             EEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence            99997655555 5 557888888 5577666554322  1     13577899999996555 4566655554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.49  E-value=0.014  Score=66.06  Aligned_cols=219  Identities=11%  Similarity=0.071  Sum_probs=115.2

Q ss_pred             ccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEEC
Q 001163          415 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDA  494 (1134)
Q Consensus       415 ~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~  494 (1134)
                      .........+.++|+|+++++ +.||.-.|+.......   .     ..+.-...+|.+.++   +++-...++|.|+.-
T Consensus        29 g~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~---k-----~~G~g~~~vw~~~n~---yAv~~~~~~I~I~kn   96 (443)
T PF04053_consen   29 GSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRN---K-----AFGSGLSFVWSSRNR---YAVLESSSTIKIYKN   96 (443)
T ss_dssp             EE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEE---E-----EEEE-SEEEE-TSSE---EEEE-TTS-EEEEET
T ss_pred             CCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcc---c-----ccCceeEEEEecCcc---EEEEECCCeEEEEEc
Confidence            345556789999999999999 4667777777433221   1     123345688998665   677777889999743


Q ss_pred             CCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCC
Q 001163          495 VTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKE  574 (1134)
Q Consensus       495 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~  574 (1134)
                      -+.+....+.. ...+..|-.     |.+|...+. +.|.+||+.+......+...  .|..+.|+++|++++..+.+  
T Consensus        97 ~~~~~~k~i~~-~~~~~~If~-----G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~--  165 (443)
T PF04053_consen   97 FKNEVVKSIKL-PFSVEKIFG-----GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD--  165 (443)
T ss_dssp             TEE-TT------SS-EEEEE------SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S---
T ss_pred             CccccceEEcC-CcccceEEc-----CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC--
Confidence            33333233332 123444421     455665554 48999999988777776643  48899999999999998743  


Q ss_pred             CCeEEEEEeCCCC--------------eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc--eeEEEec
Q 001163          575 GESYLVEWNESEG--------------AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN--LLASIDA  638 (1134)
Q Consensus       575 ~~~~i~~wd~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~  638 (1134)
                         .+.+++....              ..+..+   . ..|.+.+|..+  .++-.... .|+.  +-.|+  .+..+  
T Consensus       166 ---~i~il~~~~~~~~~~~~~g~e~~f~~~~E~---~-~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~l--  231 (443)
T PF04053_consen  166 ---SIYILKYNLEAVAAIPEEGVEDAFELIHEI---S-ERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHL--  231 (443)
T ss_dssp             ---SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-----S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE---
T ss_pred             ---eEEEEEecchhcccccccCchhceEEEEEe---c-ceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEc--
Confidence               2666553322              222222   1 26778888765  44444433 6665  33333  22332  


Q ss_pred             CCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccC
Q 001163          639 DGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD  673 (1134)
Q Consensus       639 ~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~  673 (1134)
                         ..++.-+.+.++.+.+.....|+.+..+.+..
T Consensus       232 ---d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  232 ---DKPLYLLGYLPKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             ---SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred             ---CCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence               23556677777777888888888888887643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.46  E-value=0.00096  Score=70.32  Aligned_cols=112  Identities=11%  Similarity=0.162  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHhhhcCHHHHHHHHHHhcCCCcc----------HHHHHHHhhcccHHHHHHHHccc-CcccCCccchhHHH
Q 001163            6 RELVFLILQFLDEEKFKETVHKLEQDSGFFFN----------MRYFEDMVTNGEWDEVEKYLSGF-TKVDDNRYSMKIFF   74 (1134)
Q Consensus         6 ~e~~~li~q~L~~~g~~~s~~~l~~Esg~~~~----------~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~   74 (1134)
                      +.+..+|..++..+|..+.+..|-+|+|...+          +.++-+++.+|+-.-|++.+..- ..+...  ...+.|
T Consensus       117 ~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~--~s~LE~  194 (394)
T KOG2817|consen  117 QVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK--SSSLEF  194 (394)
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc--cccHHH
Confidence            34588999999999999999999999998753          68899999999999999999775 233322  223889


Q ss_pred             HHHHHHHHHHHhcCCHH--HHHHHHHhhcccccccCHHHHHHHHHHh
Q 001163           75 EIRKQKYLEALDKRDRA--KAVEILVKDLKVFSAFNEDLFKEITQLL  119 (1134)
Q Consensus        75 ~i~~~~~lEll~~~~~~--~a~~~l~~~l~~~~~~~~~~~~~l~~ll  119 (1134)
                      .+..+.|++++..|...  +|+.+.|+.++|+......+++.|-.+|
T Consensus       195 ~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~sl  241 (394)
T KOG2817|consen  195 KLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMGSL  241 (394)
T ss_pred             HHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHHHH
Confidence            99999999999999887  9999999999999654444555544433

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.46  E-value=0.0081  Score=67.82  Aligned_cols=194  Identities=13%  Similarity=0.131  Sum_probs=113.6

Q ss_pred             EEEee-cCCCeeEEEEcCCCCeEEEEEeCC---CcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEE
Q 001163          350 VMTLN-QGSAVKSMDFHPVQQILLVVGTNM---GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM  425 (1134)
Q Consensus       350 ~~~~~-h~~~V~~v~fsp~g~~lla~gs~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  425 (1134)
                      .+.+. ....+..-+|+|+++.+....-..   ..+.++|+.+++.....                    .-.+.-..-+
T Consensus       185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~--------------------~~~g~~~~P~  244 (425)
T COG0823         185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL--------------------NFNGNNGAPA  244 (425)
T ss_pred             eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee--------------------ccCCccCCcc
Confidence            33444 566788889999999875553333   35999999988754421                    1233445678


Q ss_pred             EcCCCCEEEEEe-CCCE--EEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCC--eEEEEECCCCcee
Q 001163          426 WSPDGTLFGVAY-SKHI--VHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--VIKVWDAVTGTKQ  500 (1134)
Q Consensus       426 ~spd~~~las~s-~dg~--v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~--~i~iwd~~~~~~~  500 (1134)
                      |||||++||.+. .||.  |.+.|+.++...+    +..-.+.-+.=.|+|||+. ++++.+..|  .|.+.|.+.+.. 
T Consensus       245 fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~~~-  318 (425)
T COG0823         245 FSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGSQV-  318 (425)
T ss_pred             CCCCCCEEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCCce-
Confidence            999999888764 4564  6666877766322    3333333346789999996 344455555  455556555543 


Q ss_pred             EEecCCCcCEEEEeccccCCccEEEEecC-CCc--EEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecC
Q 001163          501 YIFEGHESPVYSICPHHKENIQFIFSTAT-DGK--IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN  572 (1134)
Q Consensus       501 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~  572 (1134)
                      ..+....+.-..-.|  ++||.+++..+. +|.  |.+.|+.+......+ ..........+.++++.++..+..
T Consensus       319 ~riT~~~~~~~~p~~--SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l-t~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         319 TRLTFSGGGNSNPVW--SPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL-TSTYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             eEeeccCCCCcCccC--CCCCCEEEEEeccCCceeeEEeccCCCCcEEEc-cccccCCCCCcCCCCceEEEeccC
Confidence            322222111112233  566677776664 344  555555544432222 223344456788899888876543

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.44  E-value=0.1  Score=60.17  Aligned_cols=246  Identities=14%  Similarity=0.125  Sum_probs=127.3

Q ss_pred             CCEEEEEEcCCCCEEEEE-eCCC----EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeC--------
Q 001163          419 ASVNRVMWSPDGTLFGVA-YSKH----IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE--------  485 (1134)
Q Consensus       419 ~~V~~l~~spd~~~las~-s~dg----~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~--------  485 (1134)
                      ..+...++||||++||.+ +..|    .++++|+.+|+.+...  +....  ...+.|.+|++. ++.+...        
T Consensus       124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~--i~~~~--~~~~~W~~d~~~-~~y~~~~~~~~~~~~  198 (414)
T PF02897_consen  124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG--IENPK--FSSVSWSDDGKG-FFYTRFDEDQRTSDS  198 (414)
T ss_dssp             EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE--EEEEE--SEEEEECTTSSE-EEEEECSTTTSS-CC
T ss_pred             EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc--ccccc--cceEEEeCCCCE-EEEEEeCcccccccC
Confidence            345578999999999976 3333    5999999999765432  22211  223999999885 3333322        


Q ss_pred             --CCeEEEEECCCCce--eEEecCCCcC--EEEEeccccCCccEEEEec-CC---CcEEEEecCCC----CceeeecCCC
Q 001163          486 --DRVIKVWDAVTGTK--QYIFEGHESP--VYSICPHHKENIQFIFSTA-TD---GKIKAWLYDNL----GSRVDYDAPG  551 (1134)
Q Consensus       486 --d~~i~iwd~~~~~~--~~~~~~h~~~--v~~~~~~~~~~~~~l~s~s-~d---g~i~vwd~~~~----~~~~~~~~~~  551 (1134)
                        ...|+.|.+.++..  ...+......  ...+..  +.++++++..+ ..   ..+.+.++...    .....+....
T Consensus       199 ~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~--s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~  276 (414)
T PF02897_consen  199 GYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSR--SKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE  276 (414)
T ss_dssp             GCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE---TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred             CCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEe--cCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence              23478888877643  2444443333  344544  45557765432 22   34666677653    1222222222


Q ss_pred             CCe-eEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCee---EEEecCCCC-CceEEEEEcCCCCEEEEEe-CCC--eEE
Q 001163          552 HSS-TMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV---KRTYHGLGK-RSVGVVQFDTTKNRFLAAG-DEF--MIK  623 (1134)
Q Consensus       552 ~~v-~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~-~~v~~~~~~~~~~~l~~~~-~dg--~i~  623 (1134)
                      ..+ ..+...  +..+...+..+.....|...++.....   ...+..+.. ..+..+.  ..+++|+... .++  .|+
T Consensus       277 ~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~--~~~~~Lvl~~~~~~~~~l~  352 (414)
T PF02897_consen  277 DGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS--LFKDYLVLSYRENGSSRLR  352 (414)
T ss_dssp             SS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE--EETTEEEEEEEETTEEEEE
T ss_pred             CceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE--EECCEEEEEEEECCccEEE
Confidence            233 223332  444444444445566788888887652   323333333 1344443  3455555544 444  588


Q ss_pred             EEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEE--EEC--CCcEEEEEccCCce
Q 001163          624 FWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAV--STN--DNGIKILANADGIR  676 (1134)
Q Consensus       624 iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~--~~~--dg~i~iw~~~~~~~  676 (1134)
                      ++++..+.....+.... .+.|..+...+++..+..  .+-  -+++.-||+.++..
T Consensus       353 v~~~~~~~~~~~~~~p~-~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  353 VYDLDDGKESREIPLPE-AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             EEETT-TEEEEEEESSS-SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             EEECCCCcEEeeecCCc-ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            99998455555555432 233455555555543332  222  35778888887743

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.42  E-value=0.31  Score=55.11  Aligned_cols=261  Identities=14%  Similarity=0.115  Sum_probs=164.8

Q ss_pred             EEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCC
Q 001163          350 VMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD  429 (1134)
Q Consensus       350 ~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd  429 (1134)
                      ...+.-......+...|+|..+.++-.....+.+-+.........                   ...-...-..++++++
T Consensus        24 ~~~~~~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~-------------------~~~g~~~p~~i~v~~~   84 (381)
T COG3391          24 TAAISLGRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQS-------------------LSVGGVYPAGVAVNPA   84 (381)
T ss_pred             EEEeecCCCCceeEEcCccCEEEEEeecCceeeecccccceeeee-------------------ccCCCccccceeeCCC
Confidence            334443446778899999966655544433444444431111100                   0001134557899998


Q ss_pred             CCEEEE-EeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEe-CCCeEEEEECCCCceeEEecCCC
Q 001163          430 GTLFGV-AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-EDRVIKVWDAVTGTKQYIFEGHE  507 (1134)
Q Consensus       430 ~~~las-~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~h~  507 (1134)
                      ++.+.. ...+..|.+.|..+.......  ..+.  ....++++++++.++++-.. .++++.+.|..+++.+.+...-.
T Consensus        85 ~~~vyv~~~~~~~v~vid~~~~~~~~~~--~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~  160 (381)
T COG3391          85 GNKVYVTTGDSNTVSVIDTATNTVLGSI--PVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN  160 (381)
T ss_pred             CCeEEEecCCCCeEEEEcCcccceeeEe--eecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC
Confidence            885554 445688999997776654422  1222  56789999999864333333 37899999999998888755433


Q ss_pred             cCEEEEeccccCCccEEE-EecCCCcEEEEecCCCCcee-e---ecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEE
Q 001163          508 SPVYSICPHHKENIQFIF-STATDGKIKAWLYDNLGSRV-D---YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEW  582 (1134)
Q Consensus       508 ~~v~~~~~~~~~~~~~l~-s~s~dg~i~vwd~~~~~~~~-~---~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w  582 (1134)
                      .+ ..+++.+  +|..++ +-..++.|.+.|........ .   .......-..+.++|+|..+...... +.+..+...
T Consensus       161 ~P-~~~a~~p--~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~-~~~~~v~~i  236 (381)
T COG3391         161 TP-TGVAVDP--DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG-SGSNNVLKI  236 (381)
T ss_pred             Cc-ceEEECC--CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEecc-CCCceEEEE
Confidence            44 6677654  446444 44578999999966543332 0   11122244578899999977766432 223578899


Q ss_pred             eCCCCeeEEE-ecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEec
Q 001163          583 NESEGAVKRT-YHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDA  638 (1134)
Q Consensus       583 d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~  638 (1134)
                      |..++..... +..... ....+.+.|+++.+.+.. ..+.+.+-|..+.........
T Consensus       237 d~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~  293 (381)
T COG3391         237 DTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT  293 (381)
T ss_pred             eCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence            9988877665 333332 445688999999998885 458899999988877776643

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.42  E-value=0.066  Score=54.06  Aligned_cols=233  Identities=12%  Similarity=0.053  Sum_probs=136.0

Q ss_pred             eEEEEcCCCCe-EEEee-CCe-EEEEEccCCeEEEEecCCCCC--eEEEEEcCCCCcEEEEEeCC-----CcEEEEEccc
Q 001163          847 PCFALSKNDSY-VMSAS-GGK-ISLFNMMTFKTMTTFMPPPPA--ATFLAFHPQDNNIIAIGMED-----SSIQIYNVRV  916 (1134)
Q Consensus       847 ~~v~~s~dg~~-la~~s-dg~-i~lwd~~~~~~~~~~~~~~~~--v~~l~~sp~~~~~la~g~~d-----g~i~iwd~~~  916 (1134)
                      ..++|+|.... ++.+- -|+ ..++|..+.+.+.++....+.  ---=.||| ||.+|...-+|     |.|-|||...
T Consensus        71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~  149 (366)
T COG3490          71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDARE  149 (366)
T ss_pred             CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEeccc
Confidence            45777776543 34444 355 778999888777766533332  12246899 89888766444     6899999885


Q ss_pred             c-eEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEE--------------------EECCCCccccceeeeecCCCCC
Q 001163          917 D-EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCV--------------------WSTDGWEKQASKFLTIPNGRTA  975 (1134)
Q Consensus       917 ~-~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~i--------------------wd~~~~~~~~~~~~~~~~~~~~  975 (1134)
                      + +.+..+..|.-.-..+.+.+||+.|+.+.  |-|..                    .|-.+++......+.....+  
T Consensus       150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~--  225 (366)
T COG3490         150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ--  225 (366)
T ss_pred             ccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh--
Confidence            4 55677888877778899999999998763  33333                    33333332222222211111  


Q ss_pred             CCCCceEEEEcCCCCEEEEE-eec-----eEEEEeCCCcccceeecc-----CCCccCEEEEEEccCCCEEEEEe-cCCc
Q 001163          976 SALADTRVQFHLDQTHLLAV-HET-----QIAIYEAPKLECLKQFVP-----REASGPITHATYSCDSQSIYVAF-EEGS 1043 (1134)
Q Consensus       976 ~~~~v~~l~fs~dg~~l~~~-~d~-----~i~iwd~~~~~~~~~~~~-----~~h~~~v~~~~~s~dg~~l~s~s-~Dg~ 1043 (1134)
                        ..++.++..+||...+.. ..|     --.+=....++.+.-+..     .....-|-+++..-+..+++..+ .-+.
T Consensus       226 --lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~  303 (366)
T COG3490         226 --LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNR  303 (366)
T ss_pred             --cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCe
Confidence              357888888998877663 111     111111112222211110     01134567788876666655444 4567


Q ss_pred             EEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEe
Q 001163         1044 VGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIE 1100 (1134)
Q Consensus      1044 i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~ 1100 (1134)
                      ..+||..+|..+.......         ...++.     ...-+++.+.+|.+.++.
T Consensus       304 ~vi~da~tG~vv~~a~l~d---------aaGva~-----~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         304 AVIWDAATGAVVSEAALPD---------AAGVAA-----AKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             EEEEEcCCCcEEecccccc---------ccccee-----ccCceEEecCCceEEecc
Confidence            8899999999875544221         112221     244577778888888873

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.38  E-value=0.0079  Score=70.96  Aligned_cols=189  Identities=10%  Similarity=0.065  Sum_probs=107.6

Q ss_pred             CCeeEEEEcCCCCeEEEee-------CC--eEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCC--------
Q 001163          844 DAVPCFALSKNDSYVMSAS-------GG--KISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED--------  906 (1134)
Q Consensus       844 ~~v~~v~~s~dg~~la~~s-------dg--~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~d--------  906 (1134)
                      ..+...++||||+.++...       |.  .|.+++.. +.. ..+.. ....+.-.|+| +|+.|++....        
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence            4577899999999887654       32  46666652 333 33321 22488899999 76666665422        


Q ss_pred             ----CcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEE---EECCCCccccceeeeecCCCCCCCCC
Q 001163          907 ----SSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCV---WSTDGWEKQASKFLTIPNGRTASALA  979 (1134)
Q Consensus       907 ----g~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~i---wd~~~~~~~~~~~~~~~~~~~~~~~~  979 (1134)
                          +.+.+.++..++...   ...+.|..+.|||||.+++... ++.|.+   -....|+........+..+..   ..
T Consensus       426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~  498 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT  498 (591)
T ss_pred             cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence                234334544443322   3356799999999999988766 477777   343444321111122221111   23


Q ss_pred             ceEEEEcCCCCEEEEEeeceEEEEeCCC-cccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEE
Q 001163          980 DTRVQFHLDQTHLLAVHETQIAIYEAPK-LECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVG 1045 (1134)
Q Consensus       980 v~~l~fs~dg~~l~~~~d~~i~iwd~~~-~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~ 1045 (1134)
                      +..+.|..++.+++...++...+|.+.- |.....+........+.+++-+++  .++....++.+.
T Consensus       499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             cccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence            5789999999966544444444554432 222222232223567778887763  455566666443

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.30  E-value=0.12  Score=55.80  Aligned_cols=230  Identities=12%  Similarity=0.080  Sum_probs=125.9

Q ss_pred             CCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEc
Q 001163          368 QQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTY  447 (1134)
Q Consensus       368 g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~  447 (1134)
                      ++ .++.|+.+| +.+++.........                    ..+...|..+...|+-+.|++-+ |+.+.++++
T Consensus         7 ~~-~L~vGt~~G-l~~~~~~~~~~~~~--------------------i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L   63 (275)
T PF00780_consen    7 GD-RLLVGTEDG-LYVYDLSDPSKPTR--------------------ILKLSSITQLSVLPELNLLLVLS-DGQLYVYDL   63 (275)
T ss_pred             CC-EEEEEECCC-EEEEEecCCcccee--------------------EeecceEEEEEEecccCEEEEEc-CCccEEEEc
Confidence            44 457888888 99999832221110                    11233499999999888777775 499999998


Q ss_pred             cCCceeeeeee-----------eecCCCCEEEEE--EecCCCceEEEEEeCCCeEEEEECCCC-----ceeEEecCCCcC
Q 001163          448 HGGDELRNHLE-----------IEAHVGSVNDLA--FSYPNKQLSVVTCGEDRVIKVWDAVTG-----TKQYIFEGHESP  509 (1134)
Q Consensus       448 ~~~~~~~~~~~-----------l~~h~~~V~~v~--~s~~~~~~~l~s~s~d~~i~iwd~~~~-----~~~~~~~~h~~~  509 (1134)
                      ..-........           .......+...+  =...+.. .|+ ....+.|.+|.+...     +..+++. -...
T Consensus        64 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~-~L~-va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~  140 (275)
T PF00780_consen   64 DSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSR-RLC-VAVKKKILIYEWNDPRNSFSKLLKEIS-LPDP  140 (275)
T ss_pred             hhhccccccccccccccccccccccccCCeeEEeeccccccce-EEE-EEECCEEEEEEEECCcccccceeEEEE-cCCC
Confidence            76443221100           011222344444  1123332 344 344458888776653     3455555 3467


Q ss_pred             EEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCC------------CCeeEEEECcCCCEEEEEecCCCCCe
Q 001163          510 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG------------HSSTMMAYSADGARLFSCGTNKEGES  577 (1134)
Q Consensus       510 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~------------~~v~~~~~s~~~~~l~~~~~~~~~~~  577 (1134)
                      +.+++|.  +  +.++.|.. +...+.|+.+......+....            .++..+.. +++.+|++...      
T Consensus       141 ~~~i~~~--~--~~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~~~------  208 (275)
T PF00780_consen  141 PSSIAFL--G--NKICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCYDN------  208 (275)
T ss_pred             cEEEEEe--C--CEEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEecc------
Confidence            7888886  2  45666664 446778888655544332211            12323333 34555554321      


Q ss_pred             EEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecC
Q 001163          578 YLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD  639 (1134)
Q Consensus       578 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  639 (1134)
                       +-++=-..|+..+...-.-......+++.  ..++++.+. +.|.||++.++++++.+...
T Consensus       209 -~g~fv~~~G~~~r~~~i~W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~  266 (275)
T PF00780_consen  209 -IGVFVNKNGEPSRKSTIQWSSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP  266 (275)
T ss_pred             -eEEEEcCCCCcCcccEEEcCCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence             22332234443331111111134445553  457777766 45999999999999998753

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.29  E-value=0.00011  Score=81.22  Aligned_cols=159  Identities=13%  Similarity=0.138  Sum_probs=107.1

Q ss_pred             cCEEEEeccccCCccEEEEecCCCcEEEEecCCCCce-ee-ecCCCCCeeEEEECc-CCCEEEEEecCCCCCeEEEEEeC
Q 001163          508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR-VD-YDAPGHSSTMMAYSA-DGARLFSCGTNKEGESYLVEWNE  584 (1134)
Q Consensus       508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-~~-~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~  584 (1134)
                      ..+.|+++....+..+++.|..+|.|-+-.++..... .+ ...+....++++|++ |.+.|+++-.....+..+.+||+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            3456666655555567888999999998877654333 22 233344788999987 55667766544455677999999


Q ss_pred             CCC--eeE--EEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC-CceeEEEecCCCCCCcceEEEcC-CCcEEE
Q 001163          585 SEG--AVK--RTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN-VNLLASIDADGGLQASPCIRFNK-EGILLA  658 (1134)
Q Consensus       585 ~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~  658 (1134)
                      .++  .+.  ..|.+.......++||..+.+.+++|.....+.++|++- ......+.    ...+..+...| .+.+++
T Consensus       137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn----Tk~vqG~tVdp~~~nY~c  212 (783)
T KOG1008|consen  137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN----TKYVQGITVDPFSPNYFC  212 (783)
T ss_pred             ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh----hhhcccceecCCCCCcee
Confidence            887  222  223332223556889998888899998988999999872 22222222    23456778888 677877


Q ss_pred             EEECCCcEEEEEc
Q 001163          659 VSTNDNGIKILAN  671 (1134)
Q Consensus       659 ~~~~dg~i~iw~~  671 (1134)
                      +-. ||.|.+||.
T Consensus       213 s~~-dg~iAiwD~  224 (783)
T KOG1008|consen  213 SNS-DGDIAIWDT  224 (783)
T ss_pred             ccc-cCceeeccc
Confidence            655 999999994

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.28  E-value=0.2  Score=54.07  Aligned_cols=231  Identities=13%  Similarity=0.121  Sum_probs=129.6

Q ss_pred             CCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEe----
Q 001163          428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF----  503 (1134)
Q Consensus       428 pd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~----  503 (1134)
                      ..++.|+.|..+| +.++++........   + .+...|..+...++-+  .++.-+ |+.+.++++..-......    
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~---i-~~~~~I~ql~vl~~~~--~llvLs-d~~l~~~~L~~l~~~~~~~~~~   76 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR---I-LKLSSITQLSVLPELN--LLLVLS-DGQLYVYDLDSLEPVSTSAPLA   76 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCcccee---E-eecceEEEEEEecccC--EEEEEc-CCccEEEEchhhcccccccccc
Confidence            3678999999999 89999833222221   1 1333499999999877  333333 499999998765443311    


Q ss_pred             ----------cCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCC-----ceeeecCCCCCeeEEEECcCCCEEEE
Q 001163          504 ----------EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG-----SRVDYDAPGHSSTMMAYSADGARLFS  568 (1134)
Q Consensus       504 ----------~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~  568 (1134)
                                ......+...+......+...+.....+.|.+|.+....     ...++.. ...+.+++|.  ++.++.
T Consensus        77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v  153 (275)
T PF00780_consen   77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICV  153 (275)
T ss_pred             ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEE
Confidence                      112234444441112222334444445688888876531     2223333 3567888888  556666


Q ss_pred             EecCCCCCeEEEEEeCCCCeeEEEecCCCC-----------CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeE--E
Q 001163          569 CGTNKEGESYLVEWNESEGAVKRTYHGLGK-----------RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLA--S  635 (1134)
Q Consensus       569 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~  635 (1134)
                      +..+     ...+.|+.++.....+.....           .++..+.. +++.+|++-  +..-.+.|. .|+..+  .
T Consensus       154 ~~~~-----~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~  224 (275)
T PF00780_consen  154 GTSK-----GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKST  224 (275)
T ss_pred             EeCC-----ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccE
Confidence            6533     278889987766554432211           12333333 334555543  222233343 444333  3


Q ss_pred             EecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCc
Q 001163          636 IDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRT  685 (1134)
Q Consensus       636 ~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~  685 (1134)
                      +...   .....+++.  ..+|+..+. +.|.||++.++ .+++.+..+.
T Consensus       225 i~W~---~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~-~lvQ~i~~~~  267 (275)
T PF00780_consen  225 IQWS---SAPQSVAYS--SPYLIAFSS-NSIEVRSLETG-ELVQTIPLPN  267 (275)
T ss_pred             EEcC---CchhEEEEE--CCEEEEECC-CEEEEEECcCC-cEEEEEECCC
Confidence            3332   234455553  447766655 56999999999 7777776644

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.22  E-value=0.13  Score=56.95  Aligned_cols=220  Identities=14%  Similarity=0.119  Sum_probs=117.3

Q ss_pred             CEEEEEEccCCceeeeeeeeecCCCCEEEEE---EecCC--CceEEEEEeC----------CCeEEEEECCCC----cee
Q 001163          440 HIVHLYTYHGGDELRNHLEIEAHVGSVNDLA---FSYPN--KQLSVVTCGE----------DRVIKVWDAVTG----TKQ  500 (1134)
Q Consensus       440 g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~---~s~~~--~~~~l~s~s~----------d~~i~iwd~~~~----~~~  500 (1134)
                      ..|++.|..+.+.+. ...+...+. +.+++   |..++  +..+++.|..          .|.|.++++...    ..+
T Consensus         2 s~i~l~d~~~~~~~~-~~~l~~~E~-~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l   79 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLD-SFELEPNEH-VTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL   79 (321)
T ss_dssp             -EEEEEETTTSSEEE-EEEEETTEE-EEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE
T ss_pred             cEEEEEeCCCCeEEE-EEECCCCce-EEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEE
Confidence            358888888877664 334554333 44333   33221  1226666543          288999999884    222


Q ss_pred             EEe--cCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeE
Q 001163          501 YIF--EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESY  578 (1134)
Q Consensus       501 ~~~--~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~  578 (1134)
                      ..+  ....++|++++..   ++.++++.  ++.|.+|++...+...........+........+++++.+-..+  ...
T Consensus        80 ~~i~~~~~~g~V~ai~~~---~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~--sv~  152 (321)
T PF03178_consen   80 KLIHSTEVKGPVTAICSF---NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMK--SVS  152 (321)
T ss_dssp             EEEEEEEESS-EEEEEEE---TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSS--SEE
T ss_pred             EEEEEEeecCcceEhhhh---CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEccc--CEE
Confidence            222  2357889999853   22433333  48999999987772222222222223333334456777764322  333


Q ss_pred             EEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC-------Cc--eeEEEecCCCCCCcceE-
Q 001163          579 LVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN-------VN--LLASIDADGGLQASPCI-  648 (1134)
Q Consensus       579 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~~--~~~~~~~~~~~~~v~~v-  648 (1134)
                      +.-|+....+....-.......+.++.|-++++.++++..+|.+.++....       +.  +......+- ...|+++ 
T Consensus       153 ~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~l-g~~v~~~~  231 (321)
T PF03178_consen  153 LLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHL-GDIVNSFR  231 (321)
T ss_dssp             EEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEE
T ss_pred             EEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEEC-CCccceEE
Confidence            445565443344333333333678888886667999999999999998763       22  222222222 2356666 


Q ss_pred             --EEcC--CC------cEEEEEECCCcEEEE
Q 001163          649 --RFNK--EG------ILLAVSTNDNGIKIL  669 (1134)
Q Consensus       649 --~~sp--~~------~~l~~~~~dg~i~iw  669 (1134)
                        .+.|  .+      ..++.++.+|.|...
T Consensus       232 ~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  232 RGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             E--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             EEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence              4444  12      247888899998844

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.07  E-value=0.14  Score=55.05  Aligned_cols=198  Identities=13%  Similarity=0.069  Sum_probs=114.6

Q ss_pred             EEcCCCCeEEEee--CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEecc---
Q 001163          850 ALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK---  924 (1134)
Q Consensus       850 ~~s~dg~~la~~s--dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~---  924 (1134)
                      .|.++...|+-..  .+.|.-|+..+++.. .+. ..+.+.++..-. .+..|++..  ..+++++..++..+..+.   
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d-~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~  105 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALID-AGGRLIACE--HGVRLLDPDTGGKITLLAEPE  105 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeec-CCCeEEEEc--cccEEEeccCCceeEEecccc
Confidence            4666777666555  678888988766433 222 233334444433 333444432  336677766555422221   


Q ss_pred             -C-ccCceEEEEEeeCCCEEEEEeC-----C----CcEEEEECC-CCccccceeeeecCCCCCCCCCceEEEEcCCCCEE
Q 001163          925 -G-HQKRITGLAFSNTLNVLVSSGA-----D----SQLCVWSTD-GWEKQASKFLTIPNGRTASALADTRVQFHLDQTHL  992 (1134)
Q Consensus       925 -~-h~~~V~~l~~s~d~~~l~s~s~-----D----g~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l  992 (1134)
                       + -...-+.+...|+|.+.++...     .    ..-.+|-+. .+.     ......++.   ...+.++||||++.|
T Consensus       106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~-----~~~l~~~~~---~~~NGla~SpDg~tl  177 (307)
T COG3386         106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG-----VVRLLDDDL---TIPNGLAFSPDGKTL  177 (307)
T ss_pred             CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCC-----EEEeecCcE---EecCceEECCCCCEE
Confidence             1 1244567888999988886544     1    111344444 222     222222211   134679999999888


Q ss_pred             EEE--eeceEEEEeCCC--cccce---eeccCCCccCEEEEEEccCCCEEEEEecCC-cEEEeecCCCcceeecCCC
Q 001163          993 LAV--HETQIAIYEAPK--LECLK---QFVPREASGPITHATYSCDSQSIYVAFEEG-SVGVLTASTLRLRCRINPT 1061 (1134)
Q Consensus       993 ~~~--~d~~i~iwd~~~--~~~~~---~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg-~i~vwd~~~~~~~~~~~~~ 1061 (1134)
                      ..+  ..+.|.-|++..  +....   ......+.+..-.++...+|.+-+++-.+| .|.+|+-+ |+++..+..+
T Consensus       178 y~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP  253 (307)
T COG3386         178 YVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP  253 (307)
T ss_pred             EEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECC
Confidence            875  447788887752  22111   111122356677788888999876555554 89999988 8888877754

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.01  E-value=0.35  Score=53.99  Aligned_cols=82  Identities=13%  Similarity=0.216  Sum_probs=59.1

Q ss_pred             CeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCC-----------------CEE-E
Q 001163          553 SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK-----------------NRF-L  614 (1134)
Q Consensus       553 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------~~l-~  614 (1134)
                      .+.+++.+|++++.++.    |.-+.|.++|+.++..++.++|..+..+.-+.....+                 .+| +
T Consensus       309 ~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI  384 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI  384 (415)
T ss_pred             eEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence            56789999998877664    3456799999999999999999877544433322221                 122 2


Q ss_pred             EEeCCCeEEEEEcCCCceeEEEec
Q 001163          615 AAGDEFMIKFWDMDNVNLLASIDA  638 (1134)
Q Consensus       615 ~~~~dg~i~iwd~~~~~~~~~~~~  638 (1134)
                      -+-.-|.|.||+++.|..+..+..
T Consensus       385 yaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  385 YAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             EeccCCeEEEEecCCCCEEEEEEe
Confidence            344788999999999988887764

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.99  E-value=0.087  Score=58.27  Aligned_cols=216  Identities=12%  Similarity=0.066  Sum_probs=116.3

Q ss_pred             cEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCC----CCEEEEEeC----------CCEEEEE
Q 001163          380 DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD----GTLFGVAYS----------KHIVHLY  445 (1134)
Q Consensus       380 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----~~~las~s~----------dg~v~iw  445 (1134)
                      .|+|.|..+.+.+....+.               -..+-..+..+.|..+    ..++++|..          .|.|.++
T Consensus         3 ~i~l~d~~~~~~~~~~~l~---------------~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~   67 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELE---------------PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVF   67 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEE---------------TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEE
T ss_pred             EEEEEeCCCCeEEEEEECC---------------CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEE
Confidence            4788888877766543332               0112223333444433    568888753          2899999


Q ss_pred             EccCC----ceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCc-eeEEe-cCCCcCEEEEeccccC
Q 001163          446 TYHGG----DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-KQYIF-EGHESPVYSICPHHKE  519 (1134)
Q Consensus       446 d~~~~----~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~-~~h~~~v~~~~~~~~~  519 (1134)
                      ++...    ..++.... ....++|++++-. ++.  ++++.  .+.|.+|++...+ .+..- ......+.++...  .
T Consensus        68 ~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~--lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~  139 (321)
T PF03178_consen   68 EISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR--LVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--K  139 (321)
T ss_dssp             EECSS-----EEEEEEE-EEESS-EEEEEEE-TTE--EEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--T
T ss_pred             EEEcccccceEEEEEEE-EeecCcceEhhhh-CCE--EEEee--cCEEEEEEccCcccchhhheecceEEEEEEecc--c
Confidence            99984    23333322 3457889999876 343  33333  3799999998877 44322 2233366666543  3


Q ss_pred             CccEEEEecCCCcEEEEecCCCCceeee---cCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCC-------C--
Q 001163          520 NIQFIFSTATDGKIKAWLYDNLGSRVDY---DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE-------G--  587 (1134)
Q Consensus       520 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-------~--  587 (1134)
                        ++++.|.....+.++.++........   ......++++.+-++++.++.+-.    .+.+.++....       +  
T Consensus       140 --~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~----~gnl~~l~~~~~~~~~~~~~~  213 (321)
T PF03178_consen  140 --NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK----DGNLFVLRYNPEIPNSRDGDP  213 (321)
T ss_dssp             --TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET----TSEEEEEEE-SS-SSTTTTTT
T ss_pred             --cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcC----CCeEEEEEECCCCcccccccc
Confidence              58999999899888866653332222   222346788888867665555532    33466554431       1  


Q ss_pred             eeEEEecCCCCCceEEE---EEcC--CCC------EEEEEeCCCeEEE
Q 001163          588 AVKRTYHGLGKRSVGVV---QFDT--TKN------RFLAAGDEFMIKF  624 (1134)
Q Consensus       588 ~~~~~~~~~~~~~v~~~---~~~~--~~~------~l~~~~~dg~i~i  624 (1134)
                      +......-|-+..++++   ++.|  .+.      .++.++.+|.|.+
T Consensus       214 ~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  214 KLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             BEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             cceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence            23333333333356555   3334  111      3666667777663

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.94  E-value=0.43  Score=54.32  Aligned_cols=210  Identities=14%  Similarity=0.150  Sum_probs=108.4

Q ss_pred             EEEcCCCCEEEEEeCC----------C-EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEE
Q 001163          424 VMWSPDGTLFGVAYSK----------H-IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW  492 (1134)
Q Consensus       424 l~~spd~~~las~s~d----------g-~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  492 (1134)
                      ++.+|.|..+|....+          . .|+||+.... .+... .+..  +.|.++.|+.+..   |+.-..||.++++
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~-ll~~i-~w~~--~~iv~~~wt~~e~---LvvV~~dG~v~vy  106 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGK-LLSSI-PWDS--GRIVGMGWTDDEE---LVVVQSDGTVRVY  106 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCC-EeEEE-EECC--CCEEEEEECCCCe---EEEEEcCCEEEEE
Confidence            4556666666655433          2 5899987654 34432 3444  7899999998665   6777899999999


Q ss_pred             ECCCCceeEEe-------cCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCcee-ee-cCCCC--------Cee
Q 001163          493 DAVTGTKQYIF-------EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV-DY-DAPGH--------SST  555 (1134)
Q Consensus       493 d~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~-~~~~~--------~v~  555 (1134)
                      |+. |+....+       .-....+....+  ..+|  ++.-..++.+.+.+--...... .+ .....        ...
T Consensus       107 ~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~--~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~  181 (410)
T PF04841_consen  107 DLF-GEFQFSLGEEIEEEKVLECRIFAIWF--YKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWT  181 (410)
T ss_pred             eCC-CceeechhhhccccCccccccccccc--CCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccc
Confidence            975 4442111       111111222221  2244  2222334444433211111010 00 00000        000


Q ss_pred             E-EEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeE
Q 001163          556 M-MAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLA  634 (1134)
Q Consensus       556 ~-~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  634 (1134)
                      . ..++.+....+....+    ..+.+.+....+.   +.  ..+++..+++||++++++.-..+|.+.+.+.+-.+.+.
T Consensus       182 ~i~~l~~~~~~~i~~~~g----~~i~~i~~~~~~~---i~--~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~  252 (410)
T PF04841_consen  182 VIPLLSSDRVVEILLANG----ETIYIIDENSFKQ---ID--SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLC  252 (410)
T ss_pred             cceEeecCcceEEEEecC----CEEEEEEcccccc---cc--CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeE
Confidence            0 1233333333332211    1233222221111   11  12378999999999999999999999999877666666


Q ss_pred             EEecCCCCCCcceEEEcCCCc
Q 001163          635 SIDADGGLQASPCIRFNKEGI  655 (1134)
Q Consensus       635 ~~~~~~~~~~v~~v~~sp~~~  655 (1134)
                      .+... .......+.|.-+..
T Consensus       253 e~~~~-~~~~p~~~~WCG~da  272 (410)
T PF04841_consen  253 EFDTD-SKSPPKQMAWCGNDA  272 (410)
T ss_pred             EeecC-cCCCCcEEEEECCCc
Confidence            66543 223556778876543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.94  E-value=0.0034  Score=69.91  Aligned_cols=94  Identities=17%  Similarity=0.423  Sum_probs=71.0

Q ss_pred             CCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEE-EEEEcCCCCEEE
Q 001163          356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVN-RVMWSPDGTLFG  434 (1134)
Q Consensus       356 ~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~spd~~~la  434 (1134)
                      ...|.-+.|+|.-. |+|++..+|.|.+..+. -+       |+|.            +.-|...|+ +++|.|||++||
T Consensus        20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~q-------Rlwt------------ip~p~~~v~~sL~W~~DGklla   78 (665)
T KOG4640|consen   20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQ-------RLWT------------IPIPGENVTASLCWRPDGKLLA   78 (665)
T ss_pred             ccceEEEEEcCccc-hhheeccCCcEEEEEec-cc-------eeEe------------ccCCCCccceeeeecCCCCEEE
Confidence            34677899999888 88999999999998876 32       2343            233555666 999999999999


Q ss_pred             EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEe
Q 001163          435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFS  472 (1134)
Q Consensus       435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s  472 (1134)
                      +|-.||+|++-|+.++..+...  +..-...|.++-|.
T Consensus        79 Vg~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   79 VGFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWD  114 (665)
T ss_pred             EEecCCeEEEEEccCCCceecc--ccccccchheeecc
Confidence            9999999999999998765431  12234556666665

>PRK10115 protease 2; Provisional

Probab=96.88  E-value=0.85  Score=55.77  Aligned_cols=245  Identities=9%  Similarity=0.037  Sum_probs=123.2

Q ss_pred             CCEEEEEEcCCCCEEEEEeCC-----CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC-----Ce
Q 001163          419 ASVNRVMWSPDGTLFGVAYSK-----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED-----RV  488 (1134)
Q Consensus       419 ~~V~~l~~spd~~~las~s~d-----g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d-----~~  488 (1134)
                      -.+..+.|||||++||.+...     ..|++-|+.+|..+..  .+.+   .-..++|++|++. ++++...+     ..
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~---~~~~~~w~~D~~~-~~y~~~~~~~~~~~~  200 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN---VEPSFVWANDSWT-FYYVRKHPVTLLPYQ  200 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC---cceEEEEeeCCCE-EEEEEecCCCCCCCE
Confidence            457778999999999886432     3588999988863321  1222   1146999999985 33433322     47


Q ss_pred             EEEEECCCC--ceeEEecCCCcCEEEEeccccCCccEEEEec---CCCcEEEEecCC--CCceeeecCCCCCeeEEEECc
Q 001163          489 IKVWDAVTG--TKQYIFEGHESPVYSICPHHKENIQFIFSTA---TDGKIKAWLYDN--LGSRVDYDAPGHSSTMMAYSA  561 (1134)
Q Consensus       489 i~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---~dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~s~  561 (1134)
                      |..+++.++  +....+........ +......++.+++..+   .++.+.+++...  ......+.........+. . 
T Consensus       201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~-  277 (686)
T PRK10115        201 VWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-H-  277 (686)
T ss_pred             EEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-e-
Confidence            888898888  33344443333333 2222233445544433   235688888533  222222222222222222 2 


Q ss_pred             CCCEEEEEecCCCCCeEEEEEeCC-CCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC-CceeEEEecC
Q 001163          562 DGARLFSCGTNKEGESYLVEWNES-EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN-VNLLASIDAD  639 (1134)
Q Consensus       562 ~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~  639 (1134)
                      .+..+...+..+.....|...++. .++....+.......+..+.+. .+..+++...+|.-+++-+.. +..+..+...
T Consensus       278 ~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~  356 (686)
T PRK10115        278 YQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVIGIAFD  356 (686)
T ss_pred             CCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceEEecCC
Confidence            234444444333334456666665 2333333333233367777776 334455555677655554432 2234443311


Q ss_pred             CCCCCcceEEEc--CCCc-EEEEEEC---CCcEEEEEccCC
Q 001163          640 GGLQASPCIRFN--KEGI-LLAVSTN---DNGIKILANADG  674 (1134)
Q Consensus       640 ~~~~~v~~v~~s--p~~~-~l~~~~~---dg~i~iw~~~~~  674 (1134)
                      . ...+..+.++  +++. ++++.+.   -+.+..+|..++
T Consensus       357 ~-~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~  396 (686)
T PRK10115        357 D-PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG  396 (686)
T ss_pred             C-CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence            1 1122223344  3333 4443332   367777777665

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.83  E-value=1.2  Score=49.88  Aligned_cols=289  Identities=13%  Similarity=0.102  Sum_probs=154.9

Q ss_pred             CceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcC-----CCCeEEEee
Q 001163          788 GLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSK-----NDSYVMSAS  862 (1134)
Q Consensus       788 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~-----dg~~la~~s  862 (1134)
                      ...+++|+..|.++||+-....+.+..                .++...     -..+|..+..-.     +...||+-.
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~----------------lllE~~-----l~~PILqv~~G~F~s~~~~~~LaVLh   95 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPED----------------LLLETQ-----LKDPILQVECGKFVSGSEDLQLAVLH   95 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCcc----------------EEEEEe-----cCCcEEEEEeccccCCCCcceEEEec
Confidence            457899999999999975433222211                111111     234555555431     334566655


Q ss_pred             CCeEEEEEccC--Ce-------EEEEecCCC--CCeEEEEEcCC----CCcEEEEEeCCCcEEEEEcccceEEEeccCcc
Q 001163          863 GGKISLFNMMT--FK-------TMTTFMPPP--PAATFLAFHPQ----DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQ  927 (1134)
Q Consensus       863 dg~i~lwd~~~--~~-------~~~~~~~~~--~~v~~l~~sp~----~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~  927 (1134)
                      -.++.||.+..  +.       .+..+..|.  .....+++-|-    +..++.+-+-||.+.+|+-+.-...+.+.. .
T Consensus        96 P~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~  174 (418)
T PF14727_consen   96 PRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-F  174 (418)
T ss_pred             CCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-C
Confidence            67777777621  11       111111222  22333333331    246888999999999999776554445544 2


Q ss_pred             CceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccc-------------------cceeeeecCCCCCCCCCceEEEEcCC
Q 001163          928 KRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQ-------------------ASKFLTIPNGRTASALADTRVQFHLD  988 (1134)
Q Consensus       928 ~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~-------------------~~~~~~~~~~~~~~~~~v~~l~fs~d  988 (1134)
                      --...++|.+.-..+++++.+..+.-|....-...                   ...--...-|...  -.+..+.++..
T Consensus       175 llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~--l~i~v~~~~~~  252 (418)
T PF14727_consen  175 LLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQA--LDIQVVRFSSS  252 (418)
T ss_pred             CCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCcee--EEEEEEEcCCC
Confidence            22234678888889999999988888875320000                   0000001111111  12334444444


Q ss_pred             CCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEE-E----ccCCC---EEEEEecCCcEEEeecCCCcceeecCC
Q 001163          989 QTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHAT-Y----SCDSQ---SIYVAFEEGSVGVLTASTLRLRCRINP 1060 (1134)
Q Consensus       989 g~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~-~----s~dg~---~l~s~s~Dg~i~vwd~~~~~~~~~~~~ 1060 (1134)
                      ...+++-..+++.+.+.. |..........   ...+++ |    ..++.   .++.++.++++.||.-.+...-+.+. 
T Consensus       253 ~~~IvvLger~Lf~l~~~-G~l~~~krLd~---~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~-  327 (418)
T PF14727_consen  253 ESDIVVLGERSLFCLKDN-GSLRFQKRLDY---NPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLP-  327 (418)
T ss_pred             CceEEEEecceEEEEcCC-CeEEEEEecCC---ceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCC-
Confidence            445555556667776663 44444433222   112221 1    11322   47889999999999866655544443 


Q ss_pred             CcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCCCCCCccCCCCCC
Q 001163         1061 TAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGRWGTSPPNE 1115 (1134)
Q Consensus      1061 ~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~~~~~~~~~~~ 1115 (1134)
                        +      . ..++.++..+.-...|++-+.+|.|.+-=+- .+..--..||.+
T Consensus       328 --~------~-PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLG-TdPs~~~~p~~~  372 (418)
T PF14727_consen  328 --H------V-PVALSVANFNGLKGLIVSLSDEGQLSVSYLG-TDPSLFQVPPLE  372 (418)
T ss_pred             --C------C-CEEEEecccCCCCceEEEEcCCCcEEEEEeC-CCCccccCCCcc
Confidence              1      1 1244445444456799999999999886443 343333445544

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.81  E-value=0.39  Score=51.69  Aligned_cols=224  Identities=14%  Similarity=0.093  Sum_probs=133.2

Q ss_pred             EEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCC
Q 001163          361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKH  440 (1134)
Q Consensus       361 ~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg  440 (1134)
                      +-.|.+++..|+.+--..+.|.-||..+++...                     ..+.+.+.++..-.++..|+++... 
T Consensus        29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~---------------------~~~p~~~~~~~~~d~~g~Lv~~~~g-   86 (307)
T COG3386          29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRV---------------------FPSPGGFSSGALIDAGGRLIACEHG-   86 (307)
T ss_pred             CccCcCCCCEEEEEeCCCCeEEEecCCcCceEE---------------------EECCCCcccceeecCCCeEEEEccc-
Confidence            446778888787887788899999998775432                     1133445555555555566655333 


Q ss_pred             EEEEEEccCCceeeeeeeee-cC-CCCEEEEEEecCCCceEEEEEeCC-----C-----eEEEEECC-CCceeEEecCCC
Q 001163          441 IVHLYTYHGGDELRNHLEIE-AH-VGSVNDLAFSYPNKQLSVVTCGED-----R-----VIKVWDAV-TGTKQYIFEGHE  507 (1134)
Q Consensus       441 ~v~iwd~~~~~~~~~~~~l~-~h-~~~V~~v~~s~~~~~~~l~s~s~d-----~-----~i~iwd~~-~~~~~~~~~~h~  507 (1134)
                       +.+++.+++.......... +. ....+.+...|+|.   +..+...     .     .-.+|-+. .+..++.+..+-
T Consensus        87 -~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~---~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~  162 (307)
T COG3386          87 -VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR---IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDL  162 (307)
T ss_pred             -cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC---EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcE
Confidence             5777776655422221111 22 24567788889998   3333333     1     11344444 566666666666


Q ss_pred             cCEEEEeccccCCccEEEEe-cCCCcEEEEecCC-----CCc--eeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEE
Q 001163          508 SPVYSICPHHKENIQFIFST-ATDGKIKAWLYDN-----LGS--RVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYL  579 (1134)
Q Consensus       508 ~~v~~~~~~~~~~~~~l~s~-s~dg~i~vwd~~~-----~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i  579 (1134)
                      ..-+.|+|++++  +.++.+ +..+.|.-|++..     ...  ........+..-.++...+|.+-+++...   ...|
T Consensus       163 ~~~NGla~SpDg--~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~---g~~v  237 (307)
T COG3386         163 TIPNGLAFSPDG--KTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG---GGRV  237 (307)
T ss_pred             EecCceEECCCC--CEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC---CceE
Confidence            666788997655  455544 5557888887762     111  11122223344567777888877544322   1259


Q ss_pred             EEEeCCCCeeEEEecCCCCCceEEEEEc-CCCCEEEEEe
Q 001163          580 VEWNESEGAVKRTYHGLGKRSVGVVQFD-TTKNRFLAAG  617 (1134)
Q Consensus       580 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~  617 (1134)
                      ..|+.. |+.+..+..... .+.+++|. ++.+.|++.+
T Consensus       238 ~~~~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         238 VRFNPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             EEECCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence            999988 998888887754 66777775 4445555554

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.81  E-value=0.068  Score=64.05  Aligned_cols=148  Identities=14%  Similarity=0.098  Sum_probs=97.6

Q ss_pred             CCcEEEEE-eCCCcEEEEEcccceEEEeccCccCc-eEEEEEee-----CCCEEEEEeCCCcEEEEECCCCccccceeee
Q 001163          896 DNNIIAIG-MEDSSIQIYNVRVDEVKTKLKGHQKR-ITGLAFSN-----TLNVLVSSGADSQLCVWSTDGWEKQASKFLT  968 (1134)
Q Consensus       896 ~~~~la~g-~~dg~i~iwd~~~~~~~~~l~~h~~~-V~~l~~s~-----d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~  968 (1134)
                      +..+|... .....|+-.|+..|+.+..+..|... |..++-..     .....+.|-.+..+..||..-..   ..++.
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k~v~  568 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NKLVD  568 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC---Cceee
Confidence            44454443 35578999999999999999988754 55543321     12234556667889999987532   11221


Q ss_pred             ecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEee
Q 001163          969 IPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLT 1048 (1134)
Q Consensus       969 ~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd 1048 (1134)
                      .............|++-+.+|..++.+.+|.||+||-. |...++.. .+-..+|..|+.+.||++|++.+ +.++.+++
T Consensus       569 ~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~AKT~l-p~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~  645 (794)
T PF08553_consen  569 SQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GKRAKTAL-PGLGDPIIGIDVTADGKWILATC-KTYLLLID  645 (794)
T ss_pred             ccccccccCCCceEEEecCCceEEEEeCCCcEEeeccc-chhhhhcC-CCCCCCeeEEEecCCCcEEEEee-cceEEEEE
Confidence            11111111245678888888887777899999999954 43333332 25578999999999999987555 57788888


Q ss_pred             c
Q 001163         1049 A 1049 (1134)
Q Consensus      1049 ~ 1049 (1134)
                      .
T Consensus       646 t  646 (794)
T PF08553_consen  646 T  646 (794)
T ss_pred             E
Confidence            5

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.78  E-value=0.039  Score=66.01  Aligned_cols=145  Identities=14%  Similarity=0.176  Sum_probs=96.7

Q ss_pred             CCceEEEEEeCCCeEEEEECCCCceeEEecCCCcC-EEEEecccc----CCccEEEEecCCCcEEEEecCCCCceeee-c
Q 001163          475 NKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESP-VYSICPHHK----ENIQFIFSTATDGKIKAWLYDNLGSRVDY-D  548 (1134)
Q Consensus       475 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~----~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~  548 (1134)
                      .+.++|........|+-.|+.+|+.+..+..|... |..++-...    .+ ...+.|-.+..+..||.+..+..... .
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~-e~tflGls~n~lfriDpR~~~~k~v~~~  570 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTN-EQTFLGLSDNSLFRIDPRLSGNKLVDSQ  570 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCC-CceEEEECCCceEEeccCCCCCceeecc
Confidence            34434445556688999999999999999887754 776653211    12 34556777888999999875532221 1


Q ss_pred             ----CCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 001163          549 ----APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKF  624 (1134)
Q Consensus       549 ----~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  624 (1134)
                          .......+++-+.+| +||+|+..|+    |++||--..+....+++... +|..+..+.||+++++.+. ..|.+
T Consensus       571 ~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~----IRLyd~~g~~AKT~lp~lG~-pI~~iDvt~DGkwilaTc~-tyLlL  643 (794)
T PF08553_consen  571 SKQYSSKNNFSCFATTEDG-YIAVGSNKGD----IRLYDRLGKRAKTALPGLGD-PIIGIDVTADGKWILATCK-TYLLL  643 (794)
T ss_pred             ccccccCCCceEEEecCCc-eEEEEeCCCc----EEeecccchhhhhcCCCCCC-CeeEEEecCCCcEEEEeec-ceEEE
Confidence                123367778777777 5666765443    99999543333344555554 9999999999999998875 45666


Q ss_pred             EEc
Q 001163          625 WDM  627 (1134)
Q Consensus       625 wd~  627 (1134)
                      ++.
T Consensus       644 i~t  646 (794)
T PF08553_consen  644 IDT  646 (794)
T ss_pred             EEE
Confidence            554

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.76  E-value=0.091  Score=45.73  Aligned_cols=102  Identities=14%  Similarity=0.153  Sum_probs=67.4

Q ss_pred             EEEEEEcC-CC---CEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCC
Q 001163          421 VNRVMWSP-DG---TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT  496 (1134)
Q Consensus       421 V~~l~~sp-d~---~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~  496 (1134)
                      |++|++.. |+   +.|++|+.|..|+||+-..  .+.   .+. -.+.|++++-...+   .++.+-.+|+|-+|+-  
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~---Ei~-e~~~v~~L~~~~~~---~F~Y~l~NGTVGvY~~--   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVA---EIT-ETDKVTSLCSLGGG---RFAYALANGTVGVYDR--   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEE---EEe-cccceEEEEEcCCC---EEEEEecCCEEEEEeC--
Confidence            67777776 33   5899999999999998653  232   233 34567777777665   4899999999999973  


Q ss_pred             CceeEEecCCCcCEEEEe-ccccCCc-cEEEEecCCCcEE
Q 001163          497 GTKQYIFEGHESPVYSIC-PHHKENI-QFIFSTATDGKIK  534 (1134)
Q Consensus       497 ~~~~~~~~~h~~~v~~~~-~~~~~~~-~~l~s~s~dg~i~  534 (1134)
                      ...+...+.... +.+++ +..+.+| .-|++|-.+|.|-
T Consensus        71 ~~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   71 SQRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             cceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            344455553333 55554 4334333 3577887777763

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.75  E-value=0.34  Score=54.12  Aligned_cols=93  Identities=16%  Similarity=0.217  Sum_probs=62.3

Q ss_pred             EEEEcCCCCEEEEEeCCCEEEE---EEccC-C--c-eee--eeeeeecCC-CCEEEEEEecC---C------CceEEEEE
Q 001163          423 RVMWSPDGTLFGVAYSKHIVHL---YTYHG-G--D-ELR--NHLEIEAHV-GSVNDLAFSYP---N------KQLSVVTC  483 (1134)
Q Consensus       423 ~l~~spd~~~las~s~dg~v~i---wd~~~-~--~-~~~--~~~~l~~h~-~~V~~v~~s~~---~------~~~~l~s~  483 (1134)
                      +++.+|++++||.+..+..+.+   |+... +  . ...  -...+..-. ..|+++.|-|=   .      ....++.|
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG   85 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG   85 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence            4688999999999988887665   64421 1  1 111  111122111 46887777552   1      12389999


Q ss_pred             eCCCeEEEEECCCCceeEEecCCCcCEEEEecc
Q 001163          484 GEDRVIKVWDAVTGTKQYIFEGHESPVYSICPH  516 (1134)
Q Consensus       484 s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~  516 (1134)
                      ..+|.|++|. ++|..+..-.-|..+|..+...
T Consensus        86 ~ssG~vrfyt-e~G~LL~~Q~~h~~pV~~ik~~  117 (415)
T PF14655_consen   86 TSSGYVRFYT-ENGVLLLSQLLHEEPVLKIKCR  117 (415)
T ss_pred             ecccEEEEEe-ccchHHHHHhcCccceEEEEec
Confidence            9999999999 6888877666689999988754

>PHA02713 hypothetical protein; Provisional

Probab=96.71  E-value=0.12  Score=61.55  Aligned_cols=199  Identities=11%  Similarity=-0.011  Sum_probs=105.0

Q ss_pred             CCcEEEEEeCC------CcEEEEEcccceEE--EeccCccCceEEEEEeeCCCEEEEEeCCC-----cEEEEECCCCccc
Q 001163          896 DNNIIAIGMED------SSIQIYNVRVDEVK--TKLKGHQKRITGLAFSNTLNVLVSSGADS-----QLCVWSTDGWEKQ  962 (1134)
Q Consensus       896 ~~~~la~g~~d------g~i~iwd~~~~~~~--~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg-----~i~iwd~~~~~~~  962 (1134)
                      ++.+.+.|+.+      ..+..||..+.+-.  ..+.....  ...+..-+|+..+.||.++     ++..||..+++  
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~--~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~--  378 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRC--RFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDK--  378 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhh--ceeEEEECCEEEEECCcCCCCCCceEEEEECCCCe--
Confidence            67788888854      34778888766422  22221111  1122334788888888764     37889987643  


Q ss_pred             cceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-ee-----------------------ceEEEEeCCCcccceeeccCC
Q 001163          963 ASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HE-----------------------TQIAIYEAPKLECLKQFVPRE 1018 (1134)
Q Consensus       963 ~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d-----------------------~~i~iwd~~~~~~~~~~~~~~ 1018 (1134)
                       +..+.......   .....+  .-+|+..++| .+                       ..+..||..+.+....-..  
T Consensus       379 -W~~~~~mp~~r---~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m--  450 (557)
T PHA02713        379 -WKMLPDMPIAL---SSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF--  450 (557)
T ss_pred             -EEECCCCCccc---ccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCC--
Confidence             22221111100   111122  2356666654 22                       2477888876653211110  


Q ss_pred             CccCEEEEEEccCCCEEEEEecC------CcEEEeecCC-CcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEe
Q 001163         1019 ASGPITHATYSCDSQSIYVAFEE------GSVGVLTAST-LRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGL 1091 (1134)
Q Consensus      1019 h~~~v~~~~~s~dg~~l~s~s~D------g~i~vwd~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~ 1091 (1134)
                      .......-+..-+|+..+.|+.+      ..+..||..+ .+.... .   .+|.. ... ..+++.    ++.+.++||
T Consensus       451 ~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~-~---~m~~~-r~~-~~~~~~----~~~iyv~Gg  520 (557)
T PHA02713        451 WTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELI-T---TTESR-LSA-LHTILH----DNTIMMLHC  520 (557)
T ss_pred             CcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEc-c---ccCcc-ccc-ceeEEE----CCEEEEEee
Confidence            01111112223467777777654      2467899887 444311 1   11111 011 122222    688999999


Q ss_pred             cCC--cEEEEeCCCCCCCccCCCCCCCCC
Q 001163         1092 TDG--GVYIIEPLEAEGRWGTSPPNENGA 1118 (1134)
Q Consensus      1092 ~Dg--~v~vW~~~~~~~~~~~~~~~~~~~ 1118 (1134)
                      .||  ++-.||+...+  |...+|+-.++
T Consensus       521 ~~~~~~~e~yd~~~~~--W~~~~~~~~~~  547 (557)
T PHA02713        521 YESYMLQDTFNVYTYE--WNHICHQHSNS  547 (557)
T ss_pred             ecceeehhhcCccccc--ccchhhhcCCc
Confidence            999  77777777655  99988887544

>smart00320 WD40 WD40 repeats

Probab=96.71  E-value=0.0032  Score=43.38  Aligned_cols=39  Identities=33%  Similarity=0.550  Sum_probs=34.5

Q ss_pred             ceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 001163          917 DEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS  955 (1134)
Q Consensus       917 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd  955 (1134)
                      ++.+..+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345667778999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.70  E-value=0.043  Score=60.13  Aligned_cols=201  Identities=11%  Similarity=0.146  Sum_probs=118.2

Q ss_pred             CCCEEEEEEcC-CCCEEEEEeCC------CEEEEEEccCCceeeee----eeeecCCCCEEEEEEecCCCceEEEEEeCC
Q 001163          418 TASVNRVMWSP-DGTLFGVAYSK------HIVHLYTYHGGDELRNH----LEIEAHVGSVNDLAFSYPNKQLSVVTCGED  486 (1134)
Q Consensus       418 ~~~V~~l~~sp-d~~~las~s~d------g~v~iwd~~~~~~~~~~----~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d  486 (1134)
                      .+.|.++++.. +..+|+.+..+      ..|-|+.-+.|-+++.-    ....+|+-.-.-+-.......+++.++...
T Consensus       276 ~~~i~sl~~~a~~NS~Lvv~~~ns~V~Rn~~iGVfk~ekgl~f~~~i~n~s~~~g~S~~P~K~mL~~~dsnlil~~~~~~  355 (644)
T KOG2395|consen  276 EGGIGSLDEGALDNSFLVVGYGNSYVTRNNRIGVFKNEKGLEFKAAIKNVSDGDGKSIDPHKAMLHRADSNLILMDGGEQ  355 (644)
T ss_pred             hcccchhhhcccCCceEEecccceEEEecceeeeeccCCceEEEeccCcccCCCccccCcchhhhhccccceEeeCCCCc
Confidence            45677788876 55667766553      22333332222211100    001122211111222223344467777777


Q ss_pred             CeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEE-----EEecCCCcEEEEecCCCCc-eeee-cC----CCCCee
Q 001163          487 RVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFI-----FSTATDGKIKAWLYDNLGS-RVDY-DA----PGHSST  555 (1134)
Q Consensus       487 ~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-----~s~s~dg~i~vwd~~~~~~-~~~~-~~----~~~~v~  555 (1134)
                      ..++-.|++.|+.+.++.-|.. |+-+.+.++..+..+     +.|-.|..|.-||++-... .... ..    ......
T Consensus       356 ~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFs  434 (644)
T KOG2395|consen  356 DKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFS  434 (644)
T ss_pred             CcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccc
Confidence            8899999999999999987776 665666555444333     3455688899999885443 1111 11    122455


Q ss_pred             EEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001163          556 MMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD  626 (1134)
Q Consensus       556 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  626 (1134)
                      |.+-..+| ++++++.+++    |++||--..+....+++... +|..+..+.+|+++++.+. ..+.+-+
T Consensus       435 c~aTT~sG-~IvvgS~~Gd----IRLYdri~~~AKTAlPgLG~-~I~hVdvtadGKwil~Tc~-tyLlLi~  498 (644)
T KOG2395|consen  435 CFATTESG-YIVVGSLKGD----IRLYDRIGRRAKTALPGLGD-AIKHVDVTADGKWILATCK-TYLLLID  498 (644)
T ss_pred             eeeecCCc-eEEEeecCCc----EEeehhhhhhhhhcccccCC-ceeeEEeeccCcEEEEecc-cEEEEEE
Confidence            66655555 6777777654    99999733344445666655 8999999999999988775 3444444

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.64  E-value=0.72  Score=50.67  Aligned_cols=149  Identities=13%  Similarity=0.089  Sum_probs=72.8

Q ss_pred             ccEEEEec-CCCcEEEEecCCCCcee----eecC---C--C--CCeeEEEECcCCCEEEEEe--cCCCCCeEEEEEeCCC
Q 001163          521 IQFIFSTA-TDGKIKAWLYDNLGSRV----DYDA---P--G--HSSTMMAYSADGARLFSCG--TNKEGESYLVEWNESE  586 (1134)
Q Consensus       521 ~~~l~s~s-~dg~i~vwd~~~~~~~~----~~~~---~--~--~~v~~~~~s~~~~~l~~~~--~~~~~~~~i~~wd~~~  586 (1134)
                      .++|+..+ ..+.|.+.|+.+.....    .++.   .  .  ..-..+-.-|+|+.++++-  .++++.+-+.+.|-++
T Consensus        87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t  166 (461)
T PF05694_consen   87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET  166 (461)
T ss_dssp             S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred             CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence            35666655 67889999987433221    1111   0  0  1122344568898888764  3445667799999998


Q ss_pred             CeeEEEecCCCC--CceEEEEEcCCCCEEEEEe--------------------CCCeEEEEEcCCCceeEEEecCCCCCC
Q 001163          587 GAVKRTYHGLGK--RSVGVVQFDTTKNRFLAAG--------------------DEFMIKFWDMDNVNLLASIDADGGLQA  644 (1134)
Q Consensus       587 ~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~--------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~  644 (1134)
                      .+....+.....  ..-..+-+.|..+.+++..                    ...++.+||+.+.+.++++........
T Consensus       167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~  246 (461)
T PF05694_consen  167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM  246 (461)
T ss_dssp             --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred             ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence            888888766433  2345677888888888753                    246799999999999999986433233


Q ss_pred             cceEEEcC--CCcEEEEEE-CCCcEEEE
Q 001163          645 SPCIRFNK--EGILLAVST-NDNGIKIL  669 (1134)
Q Consensus       645 v~~v~~sp--~~~~l~~~~-~dg~i~iw  669 (1134)
                      ...+.|..  +..+-++++ -..+|..|
T Consensus       247 pLEvRflH~P~~~~gFvg~aLss~i~~~  274 (461)
T PF05694_consen  247 PLEVRFLHDPDANYGFVGCALSSSIWRF  274 (461)
T ss_dssp             EEEEEE-SSTT--EEEEEEE--EEEEEE
T ss_pred             eEEEEecCCCCccceEEEEeccceEEEE
Confidence            45666654  444433332 33444444

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PRK10115 protease 2; Provisional

Probab=96.63  E-value=2.8  Score=51.33  Aligned_cols=244  Identities=11%  Similarity=0.034  Sum_probs=122.2

Q ss_pred             CeeEEEEcCCCCeEEEEEeCCC----cEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001163          358 AVKSMDFHPVQQILLVVGTNMG----DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF  433 (1134)
Q Consensus       358 ~V~~v~fsp~g~~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l  433 (1134)
                      .+..+.|||||++|+.+.+.+|    .|++-|+.+|+.+..                  .+.+   .-..++|++|++.|
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~------------------~i~~---~~~~~~w~~D~~~~  186 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE------------------LLDN---VEPSFVWANDSWTF  186 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc------------------cccC---cceEEEEeeCCCEE
Confidence            4667889999997766655554    588999988764321                  0111   11569999999877


Q ss_pred             EEEeCC------CEEEEEEccCCceeeeeeeeecCCCCEE-EEEEecCCCceEEEEEe-CCCeEEEEECC--CCceeEEe
Q 001163          434 GVAYSK------HIVHLYTYHGGDELRNHLEIEAHVGSVN-DLAFSYPNKQLSVVTCG-EDRVIKVWDAV--TGTKQYIF  503 (1134)
Q Consensus       434 as~s~d------g~v~iwd~~~~~~~~~~~~l~~h~~~V~-~v~~s~~~~~~~l~s~s-~d~~i~iwd~~--~~~~~~~~  503 (1134)
                      +....+      ..|..+++.++..-. ...+........ .+..+.+++.+++.+.+ .++.+.+++..  ++.....+
T Consensus       187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d-~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~  265 (686)
T PRK10115        187 YYVRKHPVTLLPYQVWRHTIGTPASQD-ELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL  265 (686)
T ss_pred             EEEEecCCCCCCCEEEEEECCCChhHC-eEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE
Confidence            766442      367888888873111 112333333333 33334477753322222 24578888843  34322222


Q ss_pred             cCCCcCEEEEeccccCCccEEEEecCC---CcEEEEecCCCC-ceeeecCC-CCCeeEEEECcCCCEEEEEecCCCCCeE
Q 001163          504 EGHESPVYSICPHHKENIQFIFSTATD---GKIKAWLYDNLG-SRVDYDAP-GHSSTMMAYSADGARLFSCGTNKEGESY  578 (1134)
Q Consensus       504 ~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~-~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~  578 (1134)
                      ..-......+. +. .+ .+++....+   ..|...++.... ....+... ...+..+.++  ++.|+..... ++...
T Consensus       266 ~~~~~~~~~~~-~~-~~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~-~g~~~  339 (686)
T PRK10115        266 PRRKDHEYSLD-HY-QH-RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQ-RGLTS  339 (686)
T ss_pred             ECCCCCEEEEE-eC-CC-EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEe-CCEEE
Confidence            21112222222 21 22 333333222   234334444212 22223221 2367777776  4455544433 34666


Q ss_pred             EEEEeCCCCeeEEEec-CCCCCceEEEEEc--CCCC-EEEEEe---CCCeEEEEEcCCCc
Q 001163          579 LVEWNESEGAVKRTYH-GLGKRSVGVVQFD--TTKN-RFLAAG---DEFMIKFWDMDNVN  631 (1134)
Q Consensus       579 i~~wd~~~~~~~~~~~-~~~~~~v~~~~~~--~~~~-~l~~~~---~dg~i~iwd~~~~~  631 (1134)
                      +.+++..++. +..+. .... .+..+.++  +++. .+++.+   .-+.++.+|..+++
T Consensus       340 l~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        340 LRQINRKTRE-VIGIAFDDPA-YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             EEEEcCCCCc-eEEecCCCCc-eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            8888876443 33333 1111 22333344  3433 444333   45788999988765

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.56  E-value=3.1  Score=51.00  Aligned_cols=64  Identities=9%  Similarity=0.032  Sum_probs=43.6

Q ss_pred             ceEEEEeCCCcccceeeccCCCc----------------cCEEEEEEccCCCEEEE-EecCCcEEEeecCCCcceeecCC
Q 001163          998 TQIAIYEAPKLECLKQFVPREAS----------------GPITHATYSCDSQSIYV-AFEEGSVGVLTASTLRLRCRINP 1060 (1134)
Q Consensus       998 ~~i~iwd~~~~~~~~~~~~~~h~----------------~~v~~~~~s~dg~~l~s-~s~Dg~i~vwd~~~~~~~~~~~~ 1060 (1134)
                      |.|.-+|+.+++.+-+.....+.                .....-...-.|.+++. ++.|+.++-+|.++|+.+.+...
T Consensus       641 G~l~AiDl~tGk~~W~~~~g~~~~~~p~~~~~~~~~~~g~p~~gG~l~TagglvF~~gt~d~~l~A~D~~tGk~lW~~~l  720 (764)
T TIGR03074       641 GYMAAIDLKTGKVVWQHPNGTVRDTGPMGIRMPLPIPIGVPTLGGPLATAGGLVFIGATQDNYLRAYDLSTGKELWKARL  720 (764)
T ss_pred             EEEEEEECCCCcEeeeeECCccccccccccccccccccCCcccCCcEEEcCCEEEEEeCCCCEEEEEECCCCceeeEeeC
Confidence            77888999988877665532110                11112223346677766 78999999999999999988774


Q ss_pred             C
Q 001163         1061 T 1061 (1134)
Q Consensus      1061 ~ 1061 (1134)
                      .
T Consensus       721 ~  721 (764)
T TIGR03074       721 P  721 (764)
T ss_pred             C
Confidence            4

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.53  E-value=0.83  Score=48.13  Aligned_cols=147  Identities=15%  Similarity=0.050  Sum_probs=88.2

Q ss_pred             CeEEEEEcCCCCcEEEEEe-CC--CcEEEEEcccceEEEe-ccCccCceEEEEEeeCCCEEEEEeCCCcEEEEE-CCCCc
Q 001163          886 AATFLAFHPQDNNIIAIGM-ED--SSIQIYNVRVDEVKTK-LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS-TDGWE  960 (1134)
Q Consensus       886 ~v~~l~~sp~~~~~la~g~-~d--g~i~iwd~~~~~~~~~-l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd-~~~~~  960 (1134)
                      .+...++++ +++.+|... .+  ..++++..  +..... +.+  ..++.-.|++++...+....+...+++. ...++
T Consensus        25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~   99 (253)
T PF10647_consen   25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT   99 (253)
T ss_pred             cccceEECC-CCCeEEEEEEcCCCCEEEEEcC--CCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence            688999999 666665544 23  34555543  332222 233  3678889999988777777677677774 23332


Q ss_pred             cccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEe----eceEEEEeCC---Cc--ccc-eeecc-CCCccCEEEEEEc
Q 001163          961 KQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVH----ETQIAIYEAP---KL--ECL-KQFVP-REASGPITHATYS 1029 (1134)
Q Consensus       961 ~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~----d~~i~iwd~~---~~--~~~-~~~~~-~~h~~~v~~~~~s 1029 (1134)
                      ..   ...+.-....  ..|..+.+||||..++.-.    ++.|.+--+.   .+  ..+ ..... ......++++.|.
T Consensus       100 ~~---~~~v~~~~~~--~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~  174 (253)
T PF10647_consen  100 GE---PVEVDWPGLR--GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS  174 (253)
T ss_pred             ce---eEEecccccC--CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence            11   2222211111  1599999999999998833    5777776553   22  011 00110 1224688999999


Q ss_pred             cCCCEEEEEecCC
Q 001163         1030 CDSQSIYVAFEEG 1042 (1134)
Q Consensus      1030 ~dg~~l~s~s~Dg 1042 (1134)
                      +++.+++.+...+
T Consensus       175 ~~~~L~V~~~~~~  187 (253)
T PF10647_consen  175 DDSTLVVLGRSAG  187 (253)
T ss_pred             CCCEEEEEeCCCC
Confidence            9999877665543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.52  E-value=0.92  Score=46.77  Aligned_cols=186  Identities=9%  Similarity=0.113  Sum_probs=114.7

Q ss_pred             CeeEEEEcCCCCeEEEee-CC--eEEEEEccCCeEEEEecCCC-CCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEE
Q 001163          845 AVPCFALSKNDSYVMSAS-GG--KISLFNMMTFKTMTTFMPPP-PAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVK  920 (1134)
Q Consensus       845 ~v~~v~~s~dg~~la~~s-dg--~i~lwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~  920 (1134)
                      -...+.|..+|.++-+.+ -|  .|+.+|+.+++......-.. ----.++..  ++++....-.++...+||..+-+.+
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~  123 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKI  123 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEE
Confidence            345788878888777766 44  59999999999876654322 223455555  4567777778899999999999988


Q ss_pred             EeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-eece
Q 001163          921 TKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQ  999 (1134)
Q Consensus       921 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~  999 (1134)
                      .++.- .+.-+.++  .|++.|+.+.....+.++|.++-+...  .+++.....+ -..+.-+.+- +|...|=- ....
T Consensus       124 ~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~--~i~V~~~g~p-v~~LNELE~i-~G~IyANVW~td~  196 (264)
T PF05096_consen  124 GTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVR--TIQVTDNGRP-VSNLNELEYI-NGKIYANVWQTDR  196 (264)
T ss_dssp             EEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEE--EEE-EETTEE----EEEEEEE-TTEEEEEETTSSE
T ss_pred             EEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEE--EEEEEECCEE-CCCcEeEEEE-cCEEEEEeCCCCe
Confidence            88763 45667877  467777777777789999988755433  3333222111 1235556665 45433323 5567


Q ss_pred             EEEEeCCCcccceeeccC----------CC---ccCEEEEEEccCCCEEEEEe
Q 001163         1000 IAIYEAPKLECLKQFVPR----------EA---SGPITHATYSCDSQSIYVAF 1039 (1134)
Q Consensus      1000 i~iwd~~~~~~~~~~~~~----------~h---~~~v~~~~~s~dg~~l~s~s 1039 (1134)
                      |...|..+|+....+...          .+   ..-...||+.|++..|+..+
T Consensus       197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            778888888877655310          01   34578999988777665544

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.48  E-value=0.91  Score=50.14  Aligned_cols=242  Identities=14%  Similarity=0.103  Sum_probs=117.7

Q ss_pred             eeEEEEcCCCCeEEEeeCCeEEEEEccCCeE---EEEec----CCCCCeEEEEEcCC---CCcEEEEEeCC--------C
Q 001163          846 VPCFALSKNDSYVMSASGGKISLFNMMTFKT---MTTFM----PPPPAATFLAFHPQ---DNNIIAIGMED--------S  907 (1134)
Q Consensus       846 v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~---~~~~~----~~~~~v~~l~~sp~---~~~~la~g~~d--------g  907 (1134)
                      .+.|+|.|||+++++-..|.|++++ ..+..   +..+.    ........++++|+   ++.+.++.+..        .
T Consensus         4 P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~   82 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN   82 (331)
T ss_dssp             EEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred             ceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence            5789999999988876799999999 34443   33331    23356899999993   24444433321        1


Q ss_pred             cEEEEEcccc-------eEE-EeccC---ccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCC--
Q 001163          908 SIQIYNVRVD-------EVK-TKLKG---HQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRT--  974 (1134)
Q Consensus       908 ~i~iwd~~~~-------~~~-~~l~~---h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~--  974 (1134)
                      .|.-|.+..+       +.+ ..+..   .......|+|.|||.+.++.+..+.  --...........++.+.....  
T Consensus        83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~--~~~~~~~~~~~G~ilri~~dG~~p  160 (331)
T PF07995_consen   83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN--DDNAQDPNSLRGKILRIDPDGSIP  160 (331)
T ss_dssp             EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT--GGGGCSTTSSTTEEEEEETTSSB-
T ss_pred             eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC--cccccccccccceEEEecccCcCC
Confidence            3444444332       111 12222   1223456999999988887765443  0000000000111222111100  


Q ss_pred             -----------C------CCCCceEEEEcCC-CCEEEE--EeeceEEEEeCCCcccc-----------------------
Q 001163          975 -----------A------SALADTRVQFHLD-QTHLLA--VHETQIAIYEAPKLECL----------------------- 1011 (1134)
Q Consensus       975 -----------~------~~~~v~~l~fs~d-g~~l~~--~~d~~i~iwd~~~~~~~----------------------- 1011 (1134)
                                 .      ..-....++|.|. |.+.++  +.+..=.|..+..|..-                       
T Consensus       161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~  240 (331)
T PF07995_consen  161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP  240 (331)
T ss_dssp             TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred             CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence                       0      0012467899999 776665  33333333333322100                       


Q ss_pred             ----eeeccCCCccCEEEEEEcc-------CCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEec
Q 001163         1012 ----KQFVPREASGPITHATYSC-------DSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGN 1080 (1134)
Q Consensus      1012 ----~~~~~~~h~~~v~~~~~s~-------dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 1080 (1134)
                          ..+.. .+...++.+.|-.       +|.++++.-..+.|....+.++..+....   .+..+...++..+  ++.
T Consensus       241 ~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~r~~~v--~~~  314 (331)
T PF07995_consen  241 GFVPPVFAY-PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEE---EFLGGFGGRPRDV--AQG  314 (331)
T ss_dssp             TS---SEEE-TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---EECTTSSS-EEEE--EEE
T ss_pred             CcCccceee-cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceE---EccccCCCCceEE--EEc
Confidence                00001 2235677777753       45566666656778777776553322211   1112223344444  667


Q ss_pred             CCCCCEEEEEecCCcEE
Q 001163         1081 PTDPNQFALGLTDGGVY 1097 (1134)
Q Consensus      1081 p~~~~~l~s~~~Dg~v~ 1097 (1134)
                      | ||.++++.+.+|.|+
T Consensus       315 p-DG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  315 P-DGALYVSDDSDGKIY  330 (331)
T ss_dssp             T-TSEEEEEE-TTTTEE
T ss_pred             C-CCeEEEEECCCCeEe
Confidence            8 788888888888864

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.47  E-value=0.012  Score=65.80  Aligned_cols=92  Identities=14%  Similarity=0.273  Sum_probs=77.7

Q ss_pred             CCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeE-EEEEcCCCCcEEEEEeCCCcEEEEEcccceEE
Q 001163          843 EDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAAT-FLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVK  920 (1134)
Q Consensus       843 ~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~-~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~  920 (1134)
                      ...+..+.|+|.-.++|.+. +|.|-+..+. .+.+.++..+...++ +++|.| ||++||+|-.||+|++.|+.++..+
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence            45678899999999999998 8999999987 888899887777777 999999 8999999999999999999998776


Q ss_pred             Eec-cCccCceEEEEEe
Q 001163          921 TKL-KGHQKRITGLAFS  936 (1134)
Q Consensus       921 ~~l-~~h~~~V~~l~~s  936 (1134)
                      ... ..-...|.++.|+
T Consensus        98 ~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIWD  114 (665)
T ss_pred             eccccccccchheeecc
Confidence            552 2244667777776

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.46  E-value=0.37  Score=50.76  Aligned_cols=145  Identities=14%  Similarity=0.064  Sum_probs=90.7

Q ss_pred             CCeeEEEEcCCCCeEEEee--CCe--EEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEE-cccce
Q 001163          844 DAVPCFALSKNDSYVMSAS--GGK--ISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYN-VRVDE  918 (1134)
Q Consensus       844 ~~v~~v~~s~dg~~la~~s--dg~--i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd-~~~~~  918 (1134)
                      ..+...++++||+.+|...  ++.  ++++..  +....... ....++...|++ ++.+.+....+...+++. ..+++
T Consensus        24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~   99 (253)
T PF10647_consen   24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGT   99 (253)
T ss_pred             ccccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCc
Confidence            3688999999999887765  444  555544  33333322 234788899999 688887777777777774 33332


Q ss_pred             EE-Eec--cCccCceEEEEEeeCCCEEEEEe---CCCcEEEEECCCCccc-cc---eeeeecCCCCCCCCCceEEEEcCC
Q 001163          919 VK-TKL--KGHQKRITGLAFSNTLNVLVSSG---ADSQLCVWSTDGWEKQ-AS---KFLTIPNGRTASALADTRVQFHLD  988 (1134)
Q Consensus       919 ~~-~~l--~~h~~~V~~l~~s~d~~~l~s~s---~Dg~i~iwd~~~~~~~-~~---~~~~~~~~~~~~~~~v~~l~fs~d  988 (1134)
                      .. ..+  ..-.+.|+++.+||||..+|...   .++.|.+=-+...... ..   ....+...   ....+..+.|.++
T Consensus       100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~---~~~~v~~v~W~~~  176 (253)
T PF10647_consen  100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPP---LLSDVTDVAWSDD  176 (253)
T ss_pred             ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccc---ccCcceeeeecCC
Confidence            21 111  11122899999999999988665   3567777665543322 11   11111111   1146899999999


Q ss_pred             CCEEEEE
Q 001163          989 QTHLLAV  995 (1134)
Q Consensus       989 g~~l~~~  995 (1134)
                      +.+++.+
T Consensus       177 ~~L~V~~  183 (253)
T PF10647_consen  177 STLVVLG  183 (253)
T ss_pred             CEEEEEe
Confidence            9988874

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.45  E-value=0.27  Score=58.32  Aligned_cols=227  Identities=13%  Similarity=0.017  Sum_probs=122.3

Q ss_pred             cCCCCEEEEEeCCC------EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC------CeEEEEEC
Q 001163          427 SPDGTLFGVAYSKH------IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED------RVIKVWDA  494 (1134)
Q Consensus       427 spd~~~las~s~dg------~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d------~~i~iwd~  494 (1134)
                      +..+.+++.|+.++      .+..+|..++.-.. ...+. +...-.+++.. ++.  +.++||.|      .++..||.
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~-~~r~~~~~~~~-~~~--lYv~GG~~~~~~~l~~ve~YD~  356 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMP-SPRCRVGVAVL-NGK--LYVVGGYDSGSDRLSSVERYDP  356 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEee-cCCCC-cccccccEEEE-CCE--EEEEccccCCCcccceEEEecC
Confidence            33456667777663      57888888774322 22233 22223445554 344  78888888      36778888


Q ss_pred             CCCceeE--EecCCCcCEEEEeccccCCccEEEEecCCCc-----EEEEecCCCCceeeecCCCCCeeEEEECcCCCEEE
Q 001163          495 VTGTKQY--IFEGHESPVYSICPHHKENIQFIFSTATDGK-----IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLF  567 (1134)
Q Consensus       495 ~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~-----i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  567 (1134)
                      .+++-..  .+...........    -+|.+.+.|+.||.     |-.||..+.+-...-......-..-...-+|+..+
T Consensus       357 ~~~~W~~~a~M~~~R~~~~v~~----l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi  432 (571)
T KOG4441|consen  357 RTNQWTPVAPMNTKRSDFGVAV----LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYI  432 (571)
T ss_pred             CCCceeccCCccCccccceeEE----ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEE
Confidence            7776433  1221111111111    23477888888865     66777665443332222221111222234677777


Q ss_pred             EEecCCCCC--eEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCC-----eEEEEEcCCCceeEEEecCC
Q 001163          568 SCGTNKEGE--SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF-----MIKFWDMDNVNLLASIDADG  640 (1134)
Q Consensus       568 ~~~~~~~~~--~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~  640 (1134)
                      +||.++..+  ..+..||..+.+....-.......-..++. -++...+.||.|+     +|..||..+.+....-....
T Consensus       433 ~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~  511 (571)
T KOG4441|consen  433 IGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS  511 (571)
T ss_pred             EcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence            777665432  568899998886655433332212222332 3566777777665     37788888877655432221


Q ss_pred             CCCCcceEEEcCCCcEEEEEECCCc
Q 001163          641 GLQASPCIRFNKEGILLAVSTNDNG  665 (1134)
Q Consensus       641 ~~~~v~~v~~sp~~~~l~~~~~dg~  665 (1134)
                      ....+..+.+  ++...++|+.||.
T Consensus       512 ~rs~~g~~~~--~~~ly~vGG~~~~  534 (571)
T KOG4441|consen  512 PRSAVGVVVL--GGKLYAVGGFDGN  534 (571)
T ss_pred             ccccccEEEE--CCEEEEEecccCc
Confidence            1222222222  5677788887763

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.30  E-value=0.6  Score=46.01  Aligned_cols=98  Identities=11%  Similarity=0.145  Sum_probs=61.4

Q ss_pred             EEEEecCCceeeeecc-CCeEEeeecCC--CCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCe
Q 001163          781 RLIYTNSGLAILALAS-NAVHKLWKWPR--NERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSY  857 (1134)
Q Consensus       781 ~l~~spdg~~l~~~~~-dg~i~vw~~~~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~  857 (1134)
                      .++|+.+.+.+....+ +-.|.-||.+.  +..+        ..-.++|++..+.....++        ..+++..+|.+
T Consensus       162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~s--------nr~~i~dlrk~~~~e~~~P--------DGm~ID~eG~L  225 (310)
T KOG4499|consen  162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLS--------NRKVIFDLRKSQPFESLEP--------DGMTIDTEGNL  225 (310)
T ss_pred             cccccccCcEEEEEccCceEEeeeecCCCccccc--------CcceeEEeccCCCcCCCCC--------CcceEccCCcE
Confidence            4566655555544433 55565566432  2111        1113445554433332222        24556678887


Q ss_pred             EEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcC
Q 001163          858 VMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHP  894 (1134)
Q Consensus       858 la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp  894 (1134)
                      .++.. .++|.-.|..+|+.+.+++-+...|+|++|--
T Consensus       226 ~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  226 YVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             EEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence            76665 78999999999999999998999999999964

>smart00320 WD40 WD40 repeats

Probab=96.20  E-value=0.012  Score=40.26  Aligned_cols=39  Identities=23%  Similarity=0.401  Sum_probs=33.6

Q ss_pred             CeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 001163          874 FKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYN  913 (1134)
Q Consensus       874 ~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd  913 (1134)
                      +++...+..|...|.++.|.+ ++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence            345666777888999999999 778999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.10  E-value=0.092  Score=57.70  Aligned_cols=144  Identities=11%  Similarity=0.088  Sum_probs=98.1

Q ss_pred             EEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCE-------EEEEeCCCcEEEEECCCCccccceeeeecC
Q 001163          899 IIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNV-------LVSSGADSQLCVWSTDGWEKQASKFLTIPN  971 (1134)
Q Consensus       899 ~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~-------l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~  971 (1134)
                      ++..+.....++-.|+..|+.+..+.-|.. |.-+.+.|+.+.       -+.|-.|..|.-||..-...   ..+.+.+
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~---~kl~~~q  423 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK---NKLAVVQ  423 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc---ceeeeee
Confidence            444555667788899999999999998877 888888887542       22345577799999764221   1233333


Q ss_pred             CCCCCC-CCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeec
Q 001163          972 GRTASA-LADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTA 1049 (1134)
Q Consensus       972 ~~~~~~-~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~ 1049 (1134)
                      ++.-.. ....|.+-..+|..++.+.+|.|++||- .+....+.. .+-..+|..+..+.||++|+..+ +.++.+-++
T Consensus       424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAl-PgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTAL-PGLGDAIKHVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             ccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcc-cccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence            332211 2345666666776666689999999998 555444443 25678999999999999987554 667777664

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=96.03  E-value=5.4  Score=48.44  Aligned_cols=104  Identities=12%  Similarity=0.133  Sum_probs=65.5

Q ss_pred             EEEcCCCCeEEEeeCCeEEEEEccCCeEEEEec--CCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE--EcccceEEEecc
Q 001163          849 FALSKNDSYVMSASGGKISLFNMMTFKTMTTFM--PPPPAATFLAFHPQDNNIIAIGMEDSSIQIY--NVRVDEVKTKLK  924 (1134)
Q Consensus       849 v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~~la~g~~dg~i~iw--d~~~~~~~~~l~  924 (1134)
                      .|+.|...++.+|-...+++||+...++++...  .....|+.+.+.   +.++++|+..-.+..+  +-...+.+ .+-
T Consensus       939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~---~~RI~VgD~qeSV~~~~y~~~~n~l~-~fa 1014 (1205)
T KOG1898|consen  939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY---GARIVVGDIQESVHFVRYRREDNQLI-VFA 1014 (1205)
T ss_pred             eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec---ceEEEEeeccceEEEEEEecCCCeEE-EEe
Confidence            456677778888889999999998777666533  234567888874   4678888766666554  43333433 332


Q ss_pred             C--ccCceEEEEEeeCCCEEEEEeCCCcEEEEECC
Q 001163          925 G--HQKRITGLAFSNTLNVLVSSGADSQLCVWSTD  957 (1134)
Q Consensus       925 ~--h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~  957 (1134)
                      .  -...|+++.+- |...+|.+..=|.+.+-.+.
T Consensus      1015 dD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred             CCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence            2  12335665554 55567777666666665544

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.02  E-value=0.26  Score=42.97  Aligned_cols=102  Identities=16%  Similarity=0.150  Sum_probs=65.2

Q ss_pred             eeEEEE---cCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001163          359 VKSMDF---HPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV  435 (1134)
Q Consensus       359 V~~v~f---sp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las  435 (1134)
                      |+++++   .-||..-|.+||.|..|+||+-+.  .+..                    ..-.+.|++++-... ..++.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~E--------------------i~e~~~v~~L~~~~~-~~F~Y   58 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAE--------------------ITETDKVTSLCSLGG-GRFAY   58 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEE--------------------EecccceEEEEEcCC-CEEEE
Confidence            445554   446666678999999999998653  2221                    124567888887766 67899


Q ss_pred             EeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEec---CCCceEEEEEeCCCeEE
Q 001163          436 AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY---PNKQLSVVTCGEDRVIK  490 (1134)
Q Consensus       436 ~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~---~~~~~~l~s~s~d~~i~  490 (1134)
                      +-.+|+|-+|+-...  +.   ..+ -+..++++++..   ||.. -|++|-.+|.|-
T Consensus        59 ~l~NGTVGvY~~~~R--lW---RiK-SK~~~~~~~~~D~~gdG~~-eLI~GwsnGkve  109 (111)
T PF14783_consen   59 ALANGTVGVYDRSQR--LW---RIK-SKNQVTSMAFYDINGDGVP-ELIVGWSNGKVE  109 (111)
T ss_pred             EecCCEEEEEeCcce--ee---eec-cCCCeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence            999999999976331  22   122 222356665543   3333 578888787763

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.02  E-value=5.8  Score=48.69  Aligned_cols=200  Identities=13%  Similarity=0.144  Sum_probs=114.6

Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEecCCCcC--------EEEEecccc--------------CCccEEEEecCCCcEEEE
Q 001163          479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESP--------VYSICPHHK--------------ENIQFIFSTATDGKIKAW  536 (1134)
Q Consensus       479 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~--------v~~~~~~~~--------------~~~~~l~s~s~dg~i~vw  536 (1134)
                      .++.++.++.|.-.|..+|+.+.++......        ...+.+...              ..+..++.++.|+.+.-.
T Consensus       196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL  275 (764)
T TIGR03074       196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL  275 (764)
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence            4667777888888888888888776532211        111222211              123478888889999999


Q ss_pred             ecCCCCceeeecCCCC--------Ce----eEEEECc--CCCEEEEEecCCC------CCeEEEEEeCCCCeeEEEecCC
Q 001163          537 LYDNLGSRVDYDAPGH--------SS----TMMAYSA--DGARLFSCGTNKE------GESYLVEWNESEGAVKRTYHGL  596 (1134)
Q Consensus       537 d~~~~~~~~~~~~~~~--------~v----~~~~~s~--~~~~l~~~~~~~~------~~~~i~~wd~~~~~~~~~~~~~  596 (1134)
                      |.++++....+...+.        ..    ..+.-.|  .+..+++++...+      ..+.|+-+|.++|+.+..+...
T Consensus       276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g  355 (764)
T TIGR03074       276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG  355 (764)
T ss_pred             ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence            9888877765432110        00    0111112  1334555543222      2567999999999998877531


Q ss_pred             C--------C--------Cce-EEEEEcCCCCEEEEEe------------------CCCeEEEEEcCCCceeEEEecCCC
Q 001163          597 G--------K--------RSV-GVVQFDTTKNRFLAAG------------------DEFMIKFWDMDNVNLLASIDADGG  641 (1134)
Q Consensus       597 ~--------~--------~~v-~~~~~~~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~~~~~~  641 (1134)
                      .        .        ..+ ...++.++...++.+.                  ..+.|.-.|.++|+..-.++...|
T Consensus       356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h  435 (764)
T TIGR03074       356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH  435 (764)
T ss_pred             CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence            0        0        001 2244555554544422                  234566778888887776654211


Q ss_pred             C-------CCcceEEEcC-CCc---EEEEEECCCcEEEEEccCCceeE
Q 001163          642 L-------QASPCIRFNK-EGI---LLAVSTNDNGIKILANADGIRLL  678 (1134)
Q Consensus       642 ~-------~~v~~v~~sp-~~~---~l~~~~~dg~i~iw~~~~~~~~~  678 (1134)
                      .       ....-+.+.. +|+   .++.++.+|.+.++|-.+++.+.
T Consensus       436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~  483 (764)
T TIGR03074       436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV  483 (764)
T ss_pred             ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence            0       0111122322 553   78899999999999999995443

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PHA02713 hypothetical protein; Provisional

Probab=96.00  E-value=0.64  Score=55.41  Aligned_cols=222  Identities=8%  Similarity=0.002  Sum_probs=106.1

Q ss_pred             EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC------CeEEEEECCCCceeE--EecCCCcCEEE
Q 001163          441 IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED------RVIKVWDAVTGTKQY--IFEGHESPVYS  512 (1134)
Q Consensus       441 ~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d------~~i~iwd~~~~~~~~--~~~~h~~~v~~  512 (1134)
                      .+..||..+++-.. ...+...... .+++. -++.  +++.||.+      ..+..||..+.....  .+.........
T Consensus       273 ~v~~yd~~~~~W~~-l~~mp~~r~~-~~~a~-l~~~--IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~  347 (557)
T PHA02713        273 CILVYNINTMEYSV-ISTIPNHIIN-YASAI-VDNE--IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSL  347 (557)
T ss_pred             CEEEEeCCCCeEEE-CCCCCccccc-eEEEE-ECCE--EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeE
Confidence            46778887764221 1122211111 12222 2455  56667653      357788877765322  11111111111


Q ss_pred             EeccccCCccEEEEecCCC-----cEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCC------------
Q 001163          513 ICPHHKENIQFIFSTATDG-----KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG------------  575 (1134)
Q Consensus       513 ~~~~~~~~~~~l~s~s~dg-----~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~------------  575 (1134)
                      +.    -+|.+.+.|+.++     ++..||..+..-...-..........+..-+|+..+.||.++..            
T Consensus       348 ~~----~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~  423 (557)
T PHA02713        348 AV----IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSID  423 (557)
T ss_pred             EE----ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccc
Confidence            21    2336777777654     37788877543222111111111111122367777776654211            


Q ss_pred             -------CeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC------CeEEEEEcCC-CceeEEEecCCC
Q 001163          576 -------ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE------FMIKFWDMDN-VNLLASIDADGG  641 (1134)
Q Consensus       576 -------~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~-~~~~~~~~~~~~  641 (1134)
                             ...+..||+.+.+....-..... ........-++...+.||.+      ..+..||..+ .+....-.....
T Consensus       424 ~~~~~~~~~~ve~YDP~td~W~~v~~m~~~-r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~  502 (557)
T PHA02713        424 MEEDTHSSNKVIRYDTVNNIWETLPNFWTG-TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR  502 (557)
T ss_pred             ccccccccceEEEECCCCCeEeecCCCCcc-cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc
Confidence                   23588899887765433222111 11111122345666667643      2467899887 454332222111


Q ss_pred             CCCcceEEEcCCCcEEEEEECCC--cEEEEEccCC
Q 001163          642 LQASPCIRFNKEGILLAVSTNDN--GIKILANADG  674 (1134)
Q Consensus       642 ~~~v~~v~~sp~~~~l~~~~~dg--~i~iw~~~~~  674 (1134)
                      ......+++  ++...++|+.+|  .+..||..++
T Consensus       503 r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~  535 (557)
T PHA02713        503 LSALHTILH--DNTIMMLHCYESYMLQDTFNVYTY  535 (557)
T ss_pred             cccceeEEE--CCEEEEEeeecceeehhhcCcccc
Confidence            112222222  678888999888  6666666654

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.99  E-value=0.9  Score=46.83  Aligned_cols=196  Identities=15%  Similarity=0.168  Sum_probs=116.3

Q ss_pred             cccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCc-ccccCCCCCCCCCCeeEEEEc
Q 001163          774 LTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGI-LMTNDISDTNPEDAVPCFALS  852 (1134)
Q Consensus       774 ~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~h~~~v~~v~~s  852 (1134)
                      +....+.+++|+|+.+.|++......-.||=                     + ..|. +..+++.+   -.....+.+.
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVEl---------------------t-~~GdlirtiPL~g---~~DpE~Ieyi  137 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVEL---------------------T-KEGDLIRTIPLTG---FSDPETIEYI  137 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEE---------------------e-cCCceEEEecccc---cCChhHeEEe
Confidence            3455699999999999999988876655541                     1 2232 22333333   2334567888


Q ss_pred             CCCCeEEEee-CCeEEEEEccCCeEEEEe----------cCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccce-E-
Q 001163          853 KNDSYVMSAS-GGKISLFNMMTFKTMTTF----------MPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE-V-  919 (1134)
Q Consensus       853 ~dg~~la~~s-dg~i~lwd~~~~~~~~~~----------~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~-~-  919 (1134)
                      .+|+++++-. +..+.++.+.....+..+          ...+...-.++|.| .++.|..+-+-.=+.||.+..+. . 
T Consensus       138 g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l  216 (316)
T COG3204         138 GGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSL  216 (316)
T ss_pred             cCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCccc
Confidence            8888888776 788888877544222221          11245678899999 66667777777767777765332 1 


Q ss_pred             -EEeccCcc-------CceEEEEEee-CCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCC---CCCceEEEEcC
Q 001163          920 -KTKLKGHQ-------KRITGLAFSN-TLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTAS---ALADTRVQFHL  987 (1134)
Q Consensus       920 -~~~l~~h~-------~~V~~l~~s~-d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~v~~l~fs~  987 (1134)
                       +.....+.       ..|.++.|.+ .+.+|+-+.+++.+.-.|....-.   ..+....|....   --....++..+
T Consensus       217 ~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~---~~lsL~~g~~gL~~dipqaEGiamDd  293 (316)
T COG3204         217 SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVI---ELLSLTKGNHGLSSDIPQAEGIAMDD  293 (316)
T ss_pred             ccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCee---eeEEeccCCCCCcccCCCcceeEECC
Confidence             11111122       3456677774 456777777788777777765321   122222222211   12345678888


Q ss_pred             CCCEEEEEeec
Q 001163          988 DQTHLLAVHET  998 (1134)
Q Consensus       988 dg~~l~~~~d~  998 (1134)
                      +|...+++.-+
T Consensus       294 ~g~lYIvSEPn  304 (316)
T COG3204         294 DGNLYIVSEPN  304 (316)
T ss_pred             CCCEEEEecCC
Confidence            88766665433

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.94  E-value=3.5  Score=45.51  Aligned_cols=58  Identities=17%  Similarity=0.083  Sum_probs=35.7

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCceeEEE-ec-CCCCCCcceEEEcCCCcEEEEEECCCcEE
Q 001163          610 KNRFLAAGDEFMIKFWDMDNVNLLASI-DA-DGGLQASPCIRFNKEGILLAVSTNDNGIK  667 (1134)
Q Consensus       610 ~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~-~~~~~~v~~v~~sp~~~~l~~~~~dg~i~  667 (1134)
                      +.++++.-..+.|....+..+..+... .. ......+..+++.|||.++++...+|.|.
T Consensus       271 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  271 GDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             TEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             CcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            345555546678888887655333222 21 12223688999999999988888888764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.92  E-value=0.1  Score=62.38  Aligned_cols=105  Identities=19%  Similarity=0.209  Sum_probs=78.5

Q ss_pred             CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCc
Q 001163          429 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES  508 (1134)
Q Consensus       429 d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~  508 (1134)
                      .+..++.|+..|.|-..|+.+.  ++....-..-.++|++++|+.+|+  .++.|-.+|.|.+||+.+++.++.+..|..
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a  173 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA  173 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence            5668899999999998888764  222111223457899999999999  788999999999999999999999988887


Q ss_pred             CEEEEeccc-cCCccEEEEecCCCcEEEEecC
Q 001163          509 PVYSICPHH-KENIQFIFSTATDGKIKAWLYD  539 (1134)
Q Consensus       509 ~v~~~~~~~-~~~~~~l~s~s~dg~i~vwd~~  539 (1134)
                      +..++-+.. ..++..++++...|.  +|.+.
T Consensus       174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             ccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            777664332 233356888877776  56543

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.82  E-value=0.16  Score=57.02  Aligned_cols=158  Identities=13%  Similarity=0.153  Sum_probs=91.2

Q ss_pred             CCCeEEEEEcCCCCcEEEEEe--CCCcEEEEEcccceEEEeccCccCceEEEEEeeC----CCEEEEEeCCCcEEEEECC
Q 001163          884 PPAATFLAFHPQDNNIIAIGM--EDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNT----LNVLVSSGADSQLCVWSTD  957 (1134)
Q Consensus       884 ~~~v~~l~~sp~~~~~la~g~--~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d----~~~l~s~s~Dg~i~iwd~~  957 (1134)
                      -.++..++|.. +.+.+.+.-  .+|.++.=|   .+.+..|    ..|..+.|+|-    -..|...-....|.+|.+.
T Consensus        19 iHPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~   90 (671)
T PF15390_consen   19 IHPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC   90 (671)
T ss_pred             hccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence            35688899984 444444432  233333222   1233333    34889999885    3345556677889999986


Q ss_pred             C--CccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceE-EEEeCCCc--ccceeeccCCCccCEEEEEEccCC
Q 001163          958 G--WEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQI-AIYEAPKL--ECLKQFVPREASGPITHATYSCDS 1032 (1134)
Q Consensus       958 ~--~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i-~iwd~~~~--~~~~~~~~~~h~~~v~~~~~s~dg 1032 (1134)
                      -  .+..+...-+..+-..+...-...+.|+|....|++-....+ .++++...  .....+.   -.+.|-|.||..||
T Consensus        91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~---~~G~IhCACWT~DG  167 (671)
T PF15390_consen   91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK---TSGLIHCACWTKDG  167 (671)
T ss_pred             cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc---CCceEEEEEecCcC
Confidence            3  222222333333222221123466889999999988333333 44455433  2333332   36789999999999


Q ss_pred             CEEEEEecC-CcEEEeecCCC
Q 001163         1033 QSIYVAFEE-GSVGVLTASTL 1052 (1134)
Q Consensus      1033 ~~l~s~s~D-g~i~vwd~~~~ 1052 (1134)
                      +.|+++-.. =.-+|||-...
T Consensus       168 ~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  168 QRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             CEEEEEeCCeEEEEEecCchh
Confidence            997765433 34678985443

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=95.71  E-value=4.8  Score=45.30  Aligned_cols=278  Identities=11%  Similarity=0.146  Sum_probs=142.5

Q ss_pred             cCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC-----CCCEEEEEeCC
Q 001163          365 HPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-----DGTLFGVAYSK  439 (1134)
Q Consensus       365 sp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-----d~~~las~s~d  439 (1134)
                      +++++..+++||..|.++||+...++.... .+-              +-..-+.+|..++.-+     +...||+ =.-
T Consensus        33 ~~~~~d~IivGS~~G~LrIy~P~~~~~~~~-~ll--------------lE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP   96 (418)
T PF14727_consen   33 SPSGSDKIIVGSYSGILRIYDPSGNEFQPE-DLL--------------LETQLKDPILQVECGKFVSGSEDLQLAV-LHP   96 (418)
T ss_pred             CCCCccEEEEeccccEEEEEccCCCCCCCc-cEE--------------EEEecCCcEEEEEeccccCCCCcceEEE-ecC
Confidence            344555778999999999999965442111 000              0122345777776542     2334554 445


Q ss_pred             CEEEEEEccCC-------ceeeeeeeeecCCCC--EEEEEEec----CCCceEEEEEeCCCeEEEEECCCCceeEEecC-
Q 001163          440 HIVHLYTYHGG-------DELRNHLEIEAHVGS--VNDLAFSY----PNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG-  505 (1134)
Q Consensus       440 g~v~iwd~~~~-------~~~~~~~~l~~h~~~--V~~v~~s~----~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-  505 (1134)
                      ..+.||.+...       .... ...+..|.-.  ...++.-|    .++. ++..-+.||.+.+++-+.-...+.+.+ 
T Consensus        97 ~kl~vY~v~~~~g~~~~g~~~~-L~~~yeh~l~~~a~nm~~G~Fgg~~~~~-~IcVQS~DG~L~~feqe~~~f~~~lp~~  174 (418)
T PF14727_consen   97 RKLSVYSVSLVDGTVEHGNQYQ-LELIYEHSLQRTAYNMCCGPFGGVKGRD-FICVQSMDGSLSFFEQESFAFSRFLPDF  174 (418)
T ss_pred             CEEEEEEEEecCCCcccCcEEE-EEEEEEEecccceeEEEEEECCCCCCce-EEEEEecCceEEEEeCCcEEEEEEcCCC
Confidence            56888877321       1111 1122334322  22222222    2233 788899999999999554433333433 


Q ss_pred             -CCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCc-----------------------eeeecCCCCC---eeEEE
Q 001163          506 -HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS-----------------------RVDYDAPGHS---STMMA  558 (1134)
Q Consensus       506 -h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-----------------------~~~~~~~~~~---v~~~~  558 (1134)
                       ..+++   +|.+..  +.+++++.+..+..|.......                       .+.+.. +..   +..+.
T Consensus       175 llPgPl---~Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~~l~i~v~~  248 (418)
T PF14727_consen  175 LLPGPL---CYCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQALDIQVVR  248 (418)
T ss_pred             CCCcCe---EEeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEEC-CceeEEEEEEE
Confidence             33444   444444  5688888888888886531100                       011111 112   23333


Q ss_pred             ECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcC----CC---CEEEEEeCCCeEEEEEcCCCc
Q 001163          559 YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT----TK---NRFLAAGDEFMIKFWDMDNVN  631 (1134)
Q Consensus       559 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~----~~---~~l~~~~~dg~i~iwd~~~~~  631 (1134)
                      ++.....+++-+     +..+.+.+. +|......+-.-. +.....|..    ++   ..++.++.++++.||.-.+  
T Consensus       249 ~~~~~~~IvvLg-----er~Lf~l~~-~G~l~~~krLd~~-p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~--  319 (418)
T PF14727_consen  249 FSSSESDIVVLG-----ERSLFCLKD-NGSLRFQKRLDYN-PSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT--  319 (418)
T ss_pred             cCCCCceEEEEe-----cceEEEEcC-CCeEEEEEecCCc-eeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe--
Confidence            333333444443     334777665 3544333322111 222222211    22   2488888999999986433  


Q ss_pred             eeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCc
Q 001163          632 LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGI  675 (1134)
Q Consensus       632 ~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~  675 (1134)
                      ++..-......-.+....|..-..+|++-+.+|.+.+--+-+..
T Consensus       320 L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP  363 (418)
T PF14727_consen  320 LVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDP  363 (418)
T ss_pred             EEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence            33222221111112222233345688899999999998777663

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.66  E-value=1.4  Score=52.31  Aligned_cols=235  Identities=12%  Similarity=0.090  Sum_probs=128.1

Q ss_pred             CCCCeEEEee-C------CeEEEEEccCCeEEEEecC-CCCCeEEEEEcCCCCcEEEEEeCC-C-----cEEEEEcccce
Q 001163          853 KNDSYVMSAS-G------GKISLFNMMTFKTMTTFMP-PPPAATFLAFHPQDNNIIAIGMED-S-----SIQIYNVRVDE  918 (1134)
Q Consensus       853 ~dg~~la~~s-d------g~i~lwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~la~g~~d-g-----~i~iwd~~~~~  918 (1134)
                      ..+.+++.|+ .      ..+..+|..+++-.....- ....-.++++.  ++.+.++|+.| |     ++..||..+++
T Consensus       283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~  360 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQ  360 (571)
T ss_pred             CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCc
Confidence            3455666665 4      3488888877633222211 22234455555  56889999999 3     67788887765


Q ss_pred             EEE--eccCccCceEEEEEeeCCCEEEEEeCCCc-----EEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCE
Q 001163          919 VKT--KLKGHQKRITGLAFSNTLNVLVSSGADSQ-----LCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTH  991 (1134)
Q Consensus       919 ~~~--~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~  991 (1134)
                      -..  .+........  .-.-+|...|.||.||.     +..||..+.+   +........ .    .-..-.-.-+|+.
T Consensus       361 W~~~a~M~~~R~~~~--v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~---W~~va~m~~-~----r~~~gv~~~~g~i  430 (571)
T KOG4441|consen  361 WTPVAPMNTKRSDFG--VAVLDGKLYAVGGFDGEKSLNSVECYDPVTNK---WTPVAPMLT-R----RSGHGVAVLGGKL  430 (571)
T ss_pred             eeccCCccCccccce--eEEECCEEEEEeccccccccccEEEecCCCCc---ccccCCCCc-c----eeeeEEEEECCEE
Confidence            322  2222222111  12237888999999974     6777776644   222221111 0    1122223445666


Q ss_pred             EEE-Eee------ceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCc-----EEEeecCCCcceeecC
Q 001163          992 LLA-VHE------TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGS-----VGVLTASTLRLRCRIN 1059 (1134)
Q Consensus       992 l~~-~~d------~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~-----i~vwd~~~~~~~~~~~ 1059 (1134)
                      .++ |.+      .++..||..+.+....-...  ..+...-.-.-++.+.+.|+.|+.     |..||..+.+.... .
T Consensus       431 Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~--~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v-~  507 (571)
T KOG4441|consen  431 YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN--TRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV-A  507 (571)
T ss_pred             EEEcCcCCCccccceEEEEcCCCCceeecCCcc--cccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEc-c
Confidence            666 322      46889998877643322210  111111122347788888887763     77788877765432 1


Q ss_pred             CCcccCCCCCCCceeEEEEecCCCCCEEEEEecCC-----cEEEEeCCCCCCCccCCCC
Q 001163         1060 PTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDG-----GVYIIEPLEAEGRWGTSPP 1113 (1134)
Q Consensus      1060 ~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg-----~v~vW~~~~~~~~~~~~~~ 1113 (1134)
                      ... .+   .+.+ .+++.    ++.+.++|+.||     +|..||+...+  |...++
T Consensus       508 ~m~-~~---rs~~-g~~~~----~~~ly~vGG~~~~~~l~~ve~ydp~~d~--W~~~~~  555 (571)
T KOG4441|consen  508 PMT-SP---RSAV-GVVVL----GGKLYAVGGFDGNNNLNTVECYDPETDT--WTEVTE  555 (571)
T ss_pred             cCc-cc---cccc-cEEEE----CCEEEEEecccCccccceeEEcCCCCCc--eeeCCC
Confidence            110 01   1111 12222    678899999998     47788777655  888655

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.61  E-value=2  Score=44.32  Aligned_cols=193  Identities=10%  Similarity=0.073  Sum_probs=110.8

Q ss_pred             ccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccc-cCCCCCCCCCCeeEEEEcC
Q 001163          775 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMT-NDISDTNPEDAVPCFALSK  853 (1134)
Q Consensus       775 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~h~~~v~~v~~s~  853 (1134)
                      .......+.|..+|..+-+.+.-|.-.|-                    .+|+.+|+... ..++   ...--..++...
T Consensus        43 ~~aFTQGL~~~~~g~LyESTG~yG~S~l~--------------------~~d~~tg~~~~~~~l~---~~~FgEGit~~~   99 (264)
T PF05096_consen   43 PTAFTQGLEFLDDGTLYESTGLYGQSSLR--------------------KVDLETGKVLQSVPLP---PRYFGEGITILG   99 (264)
T ss_dssp             TT-EEEEEEEEETTEEEEEECSTTEEEEE--------------------EEETTTSSEEEEEE-T---TT--EEEEEEET
T ss_pred             CcccCccEEecCCCEEEEeCCCCCcEEEE--------------------EEECCCCcEEEEEECC---ccccceeEEEEC
Confidence            44567888898899888888876643332                    22455555432 2222   223334555555


Q ss_pred             CCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCcc-----C
Q 001163          854 NDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQ-----K  928 (1134)
Q Consensus       854 dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~-----~  928 (1134)
                      |.-+.++--++...+||..+.+.+.++.- .+.-..++.   +++.|+.......++.+|..+-+...++....     .
T Consensus       100 d~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~  175 (264)
T PF05096_consen  100 DKLYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVS  175 (264)
T ss_dssp             TEEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE--
T ss_pred             CEEEEEEecCCeEEEEccccceEEEEEec-CCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECC
Confidence            54455555589999999999999999863 355566663   55566666666789999988776665554321     2


Q ss_pred             ceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeee-------cCCCCCCCCCceEEEEcCCCCEEEEE
Q 001163          929 RITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTI-------PNGRTASALADTRVQFHLDQTHLLAV  995 (1134)
Q Consensus       929 ~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~v~~l~fs~dg~~l~~~  995 (1134)
                      .++.+.|- +|...|=.=....|..-|..+|+.....-+..       .....+..+-...+|+.|....+.++
T Consensus       176 ~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vT  248 (264)
T PF05096_consen  176 NLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVT  248 (264)
T ss_dssp             -EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEE
T ss_pred             CcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEE
Confidence            45566665 67666655556667777888877443211110       01111112457899998887776664

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.58  E-value=3.6  Score=46.73  Aligned_cols=126  Identities=16%  Similarity=0.333  Sum_probs=76.7

Q ss_pred             EeecCCCeeEEEEcCC----CCeEEEEEeCCCcEEEEecCC-----ccceeeeceeeeeccccCccccccccccCCCCEE
Q 001163          352 TLNQGSAVKSMDFHPV----QQILLVVGTNMGDVMLWEVGS-----RERIAVKSFKVWELGACSMPLQASLSSDYTASVN  422 (1134)
Q Consensus       352 ~~~h~~~V~~v~fsp~----g~~lla~gs~dg~v~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  422 (1134)
                      .++.-..|..+.|+|-    -..|||+- ..+.|.||.+..     ++.+...+..   +.+   ++.        ---.
T Consensus        52 viGqFEhV~GlsW~P~~~~~~paLLAVQ-HkkhVtVWqL~~s~~e~~K~l~sQtcE---i~e---~~p--------vLpQ  116 (671)
T PF15390_consen   52 VIGQFEHVHGLSWAPPCTADTPALLAVQ-HKKHVTVWQLCPSTTERNKLLMSQTCE---IRE---PFP--------VLPQ  116 (671)
T ss_pred             EeeccceeeeeeecCcccCCCCceEEEe-ccceEEEEEeccCccccccceeeeeee---ccC---Ccc--------cCCC
Confidence            3455566999999995    33566664 557899999863     2333222211   110   110        0113


Q ss_pred             EEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECC
Q 001163          423 RVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV  495 (1134)
Q Consensus       423 ~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~  495 (1134)
                      .+.|+|....|++-.....-.+.++...... ....+ .-.+-|.|.+|.+||+++.++.|+ .=.-+|||-.
T Consensus       117 GCVWHPk~~iL~VLT~~dvSV~~sV~~d~sr-VkaDi-~~~G~IhCACWT~DG~RLVVAvGS-sLHSyiWd~~  186 (671)
T PF15390_consen  117 GCVWHPKKAILTVLTARDVSVLPSVHCDSSR-VKADI-KTSGLIHCACWTKDGQRLVVAVGS-SLHSYIWDSA  186 (671)
T ss_pred             cccccCCCceEEEEecCceeEeeeeeeCCce-EEEec-cCCceEEEEEecCcCCEEEEEeCC-eEEEEEecCc
Confidence            4789999999988776665566676644321 11233 355679999999999985444444 4466899944

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.55  E-value=0.045  Score=39.61  Aligned_cols=34  Identities=18%  Similarity=0.319  Sum_probs=29.9

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCc
Q 001163          417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGD  451 (1134)
Q Consensus       417 h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~  451 (1134)
                      ....|.+++|+|..++||.|+.+|.|.++.+ +++
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            3457999999999999999999999999998 443

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.53  E-value=0.044  Score=65.29  Aligned_cols=99  Identities=20%  Similarity=0.317  Sum_probs=70.1

Q ss_pred             EEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCC
Q 001163          371 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGG  450 (1134)
Q Consensus       371 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~  450 (1134)
                      .++.|++.|.|...|+...-....     |             -..-.++|++++|+.||+.++.|-.+|.|.+||+..+
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~-----~-------------ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~  162 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLH-----Q-------------NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA  162 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhh-----c-------------CCccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence            568888889998888765311000     0             1234579999999999999999999999999999998


Q ss_pred             ceeeeeeeeecCCCCEEE---EEEecCCCceEEEEEeCCCeEEEEEC
Q 001163          451 DELRNHLEIEAHVGSVND---LAFSYPNKQLSVVTCGEDRVIKVWDA  494 (1134)
Q Consensus       451 ~~~~~~~~l~~h~~~V~~---v~~s~~~~~~~l~s~s~d~~i~iwd~  494 (1134)
                      +.++   .+..|..++++   +.+..++.  .++++...|.  +|..
T Consensus       163 k~l~---~i~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  163 KILK---VITEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS--FWKL  202 (1206)
T ss_pred             ccee---eeeecCCccceEEEEEEeCCCc--EEEEccCCCc--eEEE
Confidence            8776   34445544444   44444555  5778877775  5553

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.52  E-value=0.037  Score=40.02  Aligned_cols=33  Identities=27%  Similarity=0.591  Sum_probs=29.0

Q ss_pred             CCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCcc
Q 001163          356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRE  390 (1134)
Q Consensus       356 ~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~  390 (1134)
                      ...|.+++|+|... |+|.|+.+|.|.|+.+ +++
T Consensus        11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCc
Confidence            45699999999998 8899999999999998 444

>PRK13684 Ycf48-like protein; Provisional

Probab=95.47  E-value=5.3  Score=44.19  Aligned_cols=158  Identities=9%  Similarity=-0.034  Sum_probs=87.8

Q ss_pred             cCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCC
Q 001163          927 QKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAP 1006 (1134)
Q Consensus       927 ~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~ 1006 (1134)
                      .+.+.++.+.+++.+++++ ..|.+.. ....+. ..+..+..  +..   ..+..+.+.++++.++++..|.+++=..+
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~-s~~~gg-~tW~~~~~--~~~---~~l~~i~~~~~g~~~~vg~~G~~~~~s~d  243 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYS-TWEPGQ-TAWTPHQR--NSS---RRLQSMGFQPDGNLWMLARGGQIRFNDPD  243 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEE-EcCCCC-CeEEEeeC--CCc---ccceeeeEcCCCCEEEEecCCEEEEccCC
Confidence            4568899999988666554 4564432 211111 11112221  111   45889999999998888877876543345


Q ss_pred             CcccceeeccC--CCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCC
Q 001163         1007 KLECLKQFVPR--EASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDP 1084 (1134)
Q Consensus      1007 ~~~~~~~~~~~--~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~ 1084 (1134)
                      .|+........  .-...+.++.+.+++..++ ++.+|.|. ...+.|+.-........+    ....+.+  .|..  +
T Consensus       244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~----~~~~~~~--~~~~--~  313 (334)
T PRK13684        244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEV----PSNFYKI--VFLD--P  313 (334)
T ss_pred             CCCccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCC----CcceEEE--EEeC--C
Confidence            55443322211  1134578899999887655 45677555 455555543333211111    1234444  3333  3


Q ss_pred             CEEEEEecCCcEEEEeCC
Q 001163         1085 NQFALGLTDGGVYIIEPL 1102 (1134)
Q Consensus      1085 ~~l~s~~~Dg~v~vW~~~ 1102 (1134)
                      +....++..|.|.-|+-.
T Consensus       314 ~~~~~~G~~G~il~~~~~  331 (334)
T PRK13684        314 EKGFVLGQRGVLLRYVGS  331 (334)
T ss_pred             CceEEECCCceEEEecCC
Confidence            455668888998888643

>PRK13684 Ycf48-like protein; Provisional

Probab=95.42  E-value=5.5  Score=44.05  Aligned_cols=156  Identities=10%  Similarity=0.059  Sum_probs=90.1

Q ss_pred             CCCeEEEEEcCCCCcEEEEEeCCCcEEE-EEcccceEEEe-ccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCcc
Q 001163          884 PPAATFLAFHPQDNNIIAIGMEDSSIQI-YNVRVDEVKTK-LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEK  961 (1134)
Q Consensus       884 ~~~v~~l~~sp~~~~~la~g~~dg~i~i-wd~~~~~~~~~-l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~  961 (1134)
                      .+.+..+.+.| ++.+++++. .|.+.. ++ ..++.-.. -..-...++++.+.++++.++.+ ..|.+++=+.+.++.
T Consensus       172 ~g~~~~i~~~~-~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s  247 (334)
T PRK13684        172 AGVVRNLRRSP-DGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES  247 (334)
T ss_pred             cceEEEEEECC-CCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence            45688999999 776666554 454443 22 22221111 22334578899999998876654 567654323343331


Q ss_pred             ccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeecc-CCCccCEEEEEEccCCCEEEEEec
Q 001163          962 QASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVP-REASGPITHATYSCDSQSIYVAFE 1040 (1134)
Q Consensus       962 ~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~-~~h~~~v~~~~~s~dg~~l~s~s~ 1040 (1134)
                        +.....+....  ...+..+.+.+++..++++.+|.+. .....++....... ..-......+.|..+++.++ .+.
T Consensus       248 --W~~~~~~~~~~--~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~  321 (334)
T PRK13684        248 --WSKPIIPEITN--GYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQ  321 (334)
T ss_pred             --cccccCCcccc--ccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECC
Confidence              11111111111  1347789999999988888887665 34555555444321 11134677888877776655 556


Q ss_pred             CCcEEEeec
Q 001163         1041 EGSVGVLTA 1049 (1134)
Q Consensus      1041 Dg~i~vwd~ 1049 (1134)
                      .|.|..|+-
T Consensus       322 ~G~il~~~~  330 (334)
T PRK13684        322 RGVLLRYVG  330 (334)
T ss_pred             CceEEEecC
Confidence            788887763

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.38  E-value=4.8  Score=43.17  Aligned_cols=151  Identities=17%  Similarity=0.212  Sum_probs=81.8

Q ss_pred             CCCCeeEEEEcCCCCeEEEeeCCe-EEEEEccC--CeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEc-ccc
Q 001163          842 PEDAVPCFALSKNDSYVMSASGGK-ISLFNMMT--FKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNV-RVD  917 (1134)
Q Consensus       842 h~~~v~~v~~s~dg~~la~~sdg~-i~lwd~~~--~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~-~~~  917 (1134)
                      ..+.+..+..++||+++++++.|. ..-||-..  .++...  .....|..+.|.| ++.+.+++ ..|.|+.=+. ...
T Consensus       143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r--~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~~  218 (302)
T PF14870_consen  143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNR--NSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDDG  218 (302)
T ss_dssp             ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE----SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTEE
T ss_pred             CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEcc--CccceehhceecC-CCCEEEEe-CCcEEEEccCCCCc
Confidence            346788889999999999999665 55777532  333332  2457899999999 77666644 8888888772 222


Q ss_pred             eEEEe----ccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEE
Q 001163          918 EVKTK----LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLL  993 (1134)
Q Consensus       918 ~~~~~----l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~  993 (1134)
                      +.-..    ...-.-.+..++|.+++...|+|+ .|++ +.+.+.|+.  +..........   ..+..+.|.++.+-++
T Consensus       219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGkt--W~~~~~~~~~~---~n~~~i~f~~~~~gf~  291 (302)
T PF14870_consen  219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKT--WQKDRVGENVP---SNLYRIVFVNPDKGFV  291 (302)
T ss_dssp             EEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS---EE-GGGTTSS---S---EEEEEETTEEEE
T ss_pred             cccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCcc--ceECccccCCC---CceEEEEEcCCCceEE
Confidence            22111    111223478999998887777665 4533 345555542  12222111111   3478899988888888


Q ss_pred             EEeeceEEEE
Q 001163          994 AVHETQIAIY 1003 (1134)
Q Consensus       994 ~~~d~~i~iw 1003 (1134)
                      .+.+|.|.-|
T Consensus       292 lG~~G~ll~~  301 (302)
T PF14870_consen  292 LGQDGVLLRY  301 (302)
T ss_dssp             E-STTEEEEE
T ss_pred             ECCCcEEEEe
Confidence            8999887655

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.32  E-value=0.047  Score=53.60  Aligned_cols=104  Identities=15%  Similarity=0.211  Sum_probs=72.0

Q ss_pred             CCeEEEee-CCeEEEEEccCC-eEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCcc-CceE
Q 001163          855 DSYVMSAS-GGKISLFNMMTF-KTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQ-KRIT  931 (1134)
Q Consensus       855 g~~la~~s-dg~i~lwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~-~~V~  931 (1134)
                      +.-+++|. +|.|++|+..-. .....+..-...|.++.-.-+++.+..++..||.|+.|++.-++.+.....|. .++.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            34555665 999999987521 11111222223344433333356689999999999999999999888888888 6677


Q ss_pred             EEEEeeCCCEEEEE--eCCCcEEEEECCC
Q 001163          932 GLAFSNTLNVLVSS--GADSQLCVWSTDG  958 (1134)
Q Consensus       932 ~l~~s~d~~~l~s~--s~Dg~i~iwd~~~  958 (1134)
                      .+..+..+..++++  |.|..++.|++..
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcchhh
Confidence            77777777788887  8888888888765

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.26  E-value=1.6  Score=48.08  Aligned_cols=190  Identities=16%  Similarity=0.184  Sum_probs=94.8

Q ss_pred             EEEcCCCCeEEEee---C----CeEEEEEccCCeEEEEecCCCC---CeEEEEEcCCCCcEEEEEeC-------------
Q 001163          849 FALSKNDSYVMSAS---G----GKISLFNMMTFKTMTTFMPPPP---AATFLAFHPQDNNIIAIGME-------------  905 (1134)
Q Consensus       849 v~~s~dg~~la~~s---d----g~i~lwd~~~~~~~~~~~~~~~---~v~~l~~sp~~~~~la~g~~-------------  905 (1134)
                      +-.-|+|.+++++-   +    |.+.+.|-++.+..........   --..+-|.| ..+.+++...             
T Consensus       135 ~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~  213 (461)
T PF05694_consen  135 VHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPE  213 (461)
T ss_dssp             EEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TT
T ss_pred             eeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChh
Confidence            34447898888762   2    4588999998888887764332   245567777 6666666542             


Q ss_pred             -------CCcEEEEEcccceEEEeccCcc--CceEEEEEeeC--CCE-EEEEeCCCcEEEEEC-CCCccccceeeeecCC
Q 001163          906 -------DSSIQIYNVRVDEVKTKLKGHQ--KRITGLAFSNT--LNV-LVSSGADSQLCVWST-DGWEKQASKFLTIPNG  972 (1134)
Q Consensus       906 -------dg~i~iwd~~~~~~~~~l~~h~--~~V~~l~~s~d--~~~-l~s~s~Dg~i~iwd~-~~~~~~~~~~~~~~~~  972 (1134)
                             ..++.+||+.+.+.++++.--.  .....|.|..+  ..+ ++.+.-.++|..|-- +.++-...+++.++..
T Consensus       214 d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~  293 (461)
T PF05694_consen  214 DLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAK  293 (461)
T ss_dssp             THHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--E
T ss_pred             HhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCc
Confidence                   3589999999999998886543  23557777654  333 333334445554432 3333223344444332


Q ss_pred             CC-----CC--------CCCceEEEEcCCCCEEEEE--eeceEEEEeCCCcc---cceeeccCCC--------------c
Q 001163          973 RT-----AS--------ALADTRVQFHLDQTHLLAV--HETQIAIYEAPKLE---CLKQFVPREA--------------S 1020 (1134)
Q Consensus       973 ~~-----~~--------~~~v~~l~fs~dg~~l~~~--~d~~i~iwd~~~~~---~~~~~~~~~h--------------~ 1020 (1134)
                      ..     +.        ..-++.+.+|.|.++|.++  ..|.|+-||+....   .+.+....+-              .
T Consensus       294 ~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~  373 (461)
T PF05694_consen  294 KVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLR  373 (461)
T ss_dssp             E--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------
T ss_pred             ccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccC
Confidence            10     00        1347899999999999996  78999999998643   3333222110              2


Q ss_pred             cCEEEEEEccCCCEEEEEe
Q 001163         1021 GPITHATYSCDSQSIYVAF 1039 (1134)
Q Consensus      1021 ~~v~~~~~s~dg~~l~s~s 1039 (1134)
                      +...-+..|-||++|+..+
T Consensus       374 GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  374 GGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             S----EEE-TTSSEEEEE-
T ss_pred             CCCCeEEEccCCeEEEEEe
Confidence            3446788999999987654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.25  E-value=0.026  Score=55.30  Aligned_cols=68  Identities=9%  Similarity=0.018  Sum_probs=46.6

Q ss_pred             EEE-EeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecC
Q 001163          992 LLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRIN 1059 (1134)
Q Consensus       992 l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~ 1059 (1134)
                      +++ +.+|.|++|............+.+.......+.-..++.+..+++.||.|+.|++.-++.+....
T Consensus        73 ~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g  141 (238)
T KOG2444|consen   73 LMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG  141 (238)
T ss_pred             EEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeec
Confidence            444 68999999998844333333333323333344444566788899999999999999888876655

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.18  E-value=1.5  Score=45.19  Aligned_cols=170  Identities=8%  Similarity=0.106  Sum_probs=109.0

Q ss_pred             ccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-eeceEE
Q 001163          923 LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIA 1001 (1134)
Q Consensus       923 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~ 1001 (1134)
                      +.+-...+.++.|+|+.+.|++......-.+|=-..|+......+....       ....+.+.-+|+++++- .++.+.
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~-------DpE~Ieyig~n~fvi~dER~~~l~  153 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS-------DPETIEYIGGNQFVIVDERDRALY  153 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC-------ChhHeEEecCCEEEEEehhcceEE
Confidence            3454555999999999999999888887777766666644433333222       24568888888888874 778888


Q ss_pred             EEeCCCccccee-----ecc--CCC-ccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCC--
Q 001163         1002 IYEAPKLECLKQ-----FVP--REA-SGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLR-- 1071 (1134)
Q Consensus      1002 iwd~~~~~~~~~-----~~~--~~h-~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~-- 1071 (1134)
                      ++.+.....+..     +..  ..+ +...-.++|.|.+..|+.+-+-+-+.||.+..+.--...    +.+.+++..  
T Consensus       154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~----~~~~~~~~~~~  229 (316)
T COG3204         154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSV----HASLDPTADRD  229 (316)
T ss_pred             EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccc----ccccCcccccc
Confidence            887765532221     111  122 567789999999999999998888888887643311111    111122222  


Q ss_pred             ce--eE-EEEecCCCCCEEEEEecCCcEEEEeCCC
Q 001163         1072 VY--PL-VIAGNPTDPNQFALGLTDGGVYIIEPLE 1103 (1134)
Q Consensus      1072 v~--~~-~~~~~p~~~~~l~s~~~Dg~v~vW~~~~ 1103 (1134)
                      ++  .+ .+.|++..+.+|+.+..++.|..-+...
T Consensus       230 ~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         230 LFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             eEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence            11  11 3367776777888888887777666653

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.78  E-value=5.4  Score=41.70  Aligned_cols=211  Identities=14%  Similarity=0.146  Sum_probs=119.0

Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCcEEEEEcc------cc-eEEEeccC-----ccCceEEEEEeeCCCE------------
Q 001163          886 AATFLAFHPQDNNIIAIGMEDSSIQIYNVR------VD-EVKTKLKG-----HQKRITGLAFSNTLNV------------  941 (1134)
Q Consensus       886 ~v~~l~~sp~~~~~la~g~~dg~i~iwd~~------~~-~~~~~l~~-----h~~~V~~l~~s~d~~~------------  941 (1134)
                      .-..|+++| .+.+.++....+...+||..      .. .++-++..     -.+..+.+.|+....+            
T Consensus        24 N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~  102 (336)
T TIGR03118        24 NAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR  102 (336)
T ss_pred             ccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence            356799999 88888888888899999986      11 22333332     2345777877743322            


Q ss_pred             EEEEeCCCcEEEEECCCCcccc-ceeeeecCCCCCCCCCceEEEEcC--CCCEEEEE--eeceEEEEeCCCcccce--ee
Q 001163          942 LVSSGADSQLCVWSTDGWEKQA-SKFLTIPNGRTASALADTRVQFHL--DQTHLLAV--HETQIAIYEAPKLECLK--QF 1014 (1134)
Q Consensus       942 l~s~s~Dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~l~fs~--dg~~l~~~--~d~~i~iwd~~~~~~~~--~~ 1014 (1134)
                      ++.+++||+|.-|...-+.... ...+.+.....  ..-...+++..  .+.+|..+  ..++|.|||-.-.....  .+
T Consensus       103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~--gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F  180 (336)
T TIGR03118       103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQ--GNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSF  180 (336)
T ss_pred             EEEEeCCceEEeecCcCCcccccccEEEEccCCC--cceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCc
Confidence            5678899999999864433210 01122222211  12345566654  36677775  78999999876332210  11


Q ss_pred             cc---CCC--ccCEEEE---------EEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEE--
Q 001163         1015 VP---REA--SGPITHA---------TYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIA-- 1078 (1134)
Q Consensus      1015 ~~---~~h--~~~v~~~---------~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-- 1078 (1134)
                      ..   ..-  .-.|..+         .-.+++..=+.+..-|.|-+||+ .|+++.|+.....+-     .-+.|+++  
T Consensus       181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LN-----aPWG~a~APa  254 (336)
T TIGR03118       181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLN-----APWGLAIAPE  254 (336)
T ss_pred             cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCccc-----CCceeeeChh
Confidence            10   000  0111111         11122222222334478999997 477888876444332     22444332  


Q ss_pred             -ecCCCCCEEEEEecCCcEEEEeCCCCC
Q 001163         1079 -GNPTDPNQFALGLTDGGVYIIEPLEAE 1105 (1134)
Q Consensus      1079 -~~p~~~~~l~s~~~Dg~v~vW~~~~~~ 1105 (1134)
                       |-.-.+.+|+---.||+|..+|..+.+
T Consensus       255 ~FG~~sg~lLVGNFGDG~InaFD~~sG~  282 (336)
T TIGR03118       255 SFGSLSGALLVGNFGDGTINAYDPQSGA  282 (336)
T ss_pred             hhCCCCCCeEEeecCCceeEEecCCCCc
Confidence             112246788888889999999987554

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=94.64  E-value=4.9  Score=39.94  Aligned_cols=218  Identities=12%  Similarity=0.098  Sum_probs=109.4

Q ss_pred             EEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCC---CEEEEEeCC
Q 001163          363 DFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG---TLFGVAYSK  439 (1134)
Q Consensus       363 ~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~---~~las~s~d  439 (1134)
                      .|.-..+.|+.+--..|.|.-||+.+.+..+. +                 +.+.  ++.++.+--.|   .+.+.++..
T Consensus        21 ~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra-~-----------------ie~p--~~ag~ilpv~~~~q~~~v~~G~k   80 (310)
T KOG4499|consen   21 HWDVERQSLLYVDIEAGEVHRYDIEQNKVYRA-K-----------------IEGP--PSAGFILPVEGGPQEFAVGCGSK   80 (310)
T ss_pred             ceEEecceEEEEEeccCceehhhhhhhheEEE-E-----------------EecC--cceeEEEEecCCCceEEEeecce
Confidence            34434444666655667788888877654331 0                 1111  13333332222   233333443


Q ss_pred             CEEEEEEccC--Cceeeeeeeee--cCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCC--------
Q 001163          440 HIVHLYTYHG--GDELRNHLEIE--AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE--------  507 (1134)
Q Consensus       440 g~v~iwd~~~--~~~~~~~~~l~--~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~--------  507 (1134)
                      -.|.-||-..  -..++....+.  ......+.-..+|+|+  +++-.-.|-.- ......|..-.-+.+|.        
T Consensus        81 f~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gr--yy~GtMad~~~-~le~~~g~Ly~~~~~h~v~~i~~~v  157 (310)
T KOG4499|consen   81 FVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGR--YYGGTMADFGD-DLEPIGGELYSWLAGHQVELIWNCV  157 (310)
T ss_pred             EEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCc--eeeeeeccccc-cccccccEEEEeccCCCceeeehhc
Confidence            3455577332  22222211111  1234456667789998  43322222111 22212222222233333        


Q ss_pred             cCEEEEeccccCCccEEEEecCCCcEEEEecCCCC-------ceeeecC---CCC-CeeEEEECcCCCEEEEEecCCCCC
Q 001163          508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG-------SRVDYDA---PGH-SSTMMAYSADGARLFSCGTNKEGE  576 (1134)
Q Consensus       508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-------~~~~~~~---~~~-~v~~~~~s~~~~~l~~~~~~~~~~  576 (1134)
                      .--+.++|+.+. ..+.++-+.+-+|.-||.+-..       .+..+..   ..+ .--.+++..+|+..+++-.    .
T Consensus       158 ~IsNgl~Wd~d~-K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g  232 (310)
T KOG4499|consen  158 GISNGLAWDSDA-KKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----G  232 (310)
T ss_pred             cCCccccccccC-cEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----C
Confidence            222455665332 2455667778888888844221       1111211   011 2234556667777766653    2


Q ss_pred             eEEEEEeCCCCeeEEEecCCCCCceEEEEEcCC
Q 001163          577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTT  609 (1134)
Q Consensus       577 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~  609 (1134)
                      ++|...|+.+|+.+.++.-... .++++||...
T Consensus       233 ~~V~~~dp~tGK~L~eiklPt~-qitsccFgGk  264 (310)
T KOG4499|consen  233 GTVQKVDPTTGKILLEIKLPTP-QITSCCFGGK  264 (310)
T ss_pred             cEEEEECCCCCcEEEEEEcCCC-ceEEEEecCC
Confidence            3599999999999999988766 8999999754

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.59  E-value=1.5  Score=53.10  Aligned_cols=76  Identities=12%  Similarity=0.131  Sum_probs=55.2

Q ss_pred             CCceEEEEcCCCCEEEEEeeceEEEEeCCC-----c-----cc--ce-e------eccCCCccCEEEEEEccC---CCEE
Q 001163          978 LADTRVQFHLDQTHLLAVHETQIAIYEAPK-----L-----EC--LK-Q------FVPREASGPITHATYSCD---SQSI 1035 (1134)
Q Consensus       978 ~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~-----~-----~~--~~-~------~~~~~h~~~v~~~~~s~d---g~~l 1035 (1134)
                      ..|..+.++|+|++|+......|.|-.+..     +     +.  .. .      +....+...|..+.|.|.   +..|
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            358999999999999997667777766642     1     11  10 1      111234678999999986   5889


Q ss_pred             EEEecCCcEEEeecCCCc
Q 001163         1036 YVAFEEGSVGVLTASTLR 1053 (1134)
Q Consensus      1036 ~s~s~Dg~i~vwd~~~~~ 1053 (1134)
                      +.-..|+++|+||+....
T Consensus       165 ~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEEecCCEEEEEecCCCC
Confidence            999999999999997644

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=94.46  E-value=3.6  Score=41.93  Aligned_cols=193  Identities=12%  Similarity=0.086  Sum_probs=126.5

Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccce
Q 001163          886 AATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASK  965 (1134)
Q Consensus       886 ~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~  965 (1134)
                      .-..++-+| ||...+++...+.|--.|..+|+....--+....-..|..-|||...++-+.. .|.-.|-++.+..   
T Consensus        63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt---  137 (353)
T COG4257          63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT---  137 (353)
T ss_pred             CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceE---
Confidence            345677888 88888999888888888999998776655555566778888999888775544 4666666665532   


Q ss_pred             eeeecCCCCCCCCCceEEEEcCCCCEEEEEeec----------eEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEE
Q 001163          966 FLTIPNGRTASALADTRVQFHLDQTHLLAVHET----------QIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSI 1035 (1134)
Q Consensus       966 ~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~----------~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l 1035 (1134)
                      ..++...+..  .......|.++|++-+++..|          .|++|+..            ....-..||..|||..-
T Consensus       138 ~f~lp~~~a~--~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP------------qG~gpyGi~atpdGsvw  203 (353)
T COG4257         138 RFPLPLEHAD--ANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP------------QGGGPYGICATPDGSVW  203 (353)
T ss_pred             EeecccccCC--CcccceeeCCCccEEEeeccccceecCcccCceeeeccC------------CCCCCcceEECCCCcEE
Confidence            2333333322  567889999999988875432          35555543            23456788999999998


Q ss_pred             EEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCCCC
Q 001163         1036 YVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAE 1105 (1134)
Q Consensus      1036 ~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~ 1105 (1134)
                      ++.-.++.|...|-.++... .+..+.-+   |.+   +-.+.-+| -+..-++....+.++-+|.+...
T Consensus       204 yaslagnaiaridp~~~~ae-v~p~P~~~---~~g---sRriwsdp-ig~~wittwg~g~l~rfdPs~~s  265 (353)
T COG4257         204 YASLAGNAIARIDPFAGHAE-VVPQPNAL---KAG---SRRIWSDP-IGRAWITTWGTGSLHRFDPSVTS  265 (353)
T ss_pred             EEeccccceEEcccccCCcc-eecCCCcc---ccc---ccccccCc-cCcEEEeccCCceeeEeCccccc
Confidence            88878888888887777332 22211110   111   11112234 36677777777778877776555

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.08  E-value=2.2  Score=41.53  Aligned_cols=176  Identities=10%  Similarity=0.047  Sum_probs=95.9

Q ss_pred             CCCeEEEee---CCeEEEEEccCCeEEEEecCCCCCeEE--EEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccC
Q 001163          854 NDSYVMSAS---GGKISLFNMMTFKTMTTFMPPPPAATF--LAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQK  928 (1134)
Q Consensus       854 dg~~la~~s---dg~i~lwd~~~~~~~~~~~~~~~~v~~--l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~  928 (1134)
                      +|.++.+.+   ...|++||+.+++.+....-....+..  +.-.  ++.+.+..-.+|...++|.++.+++.++. ..+
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~--gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~G  131 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL--GDYFYQLTWKEGVAFKYDADTLEELGRFS-YEG  131 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec--cceEEEEEeccceeEEEChHHhhhhcccc-cCC
Confidence            445555554   356999999999988775433222211  1111  23444555678889999999988877665 334


Q ss_pred             ceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCC
Q 001163          929 RITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPK 1007 (1134)
Q Consensus       929 ~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~ 1007 (1134)
                      .-+.++-  |++.|+.++...+++.-|.++-.......+. .++...  ..+.-+.|- ||...|= =....|...|.++
T Consensus       132 eGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT-~~g~pv--~~LNELE~V-dG~lyANVw~t~~I~rI~p~s  205 (262)
T COG3823         132 EGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVT-DDGVPV--SKLNELEWV-DGELYANVWQTTRIARIDPDS  205 (262)
T ss_pred             cceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEE-ECCeec--ccccceeee-ccEEEEeeeeecceEEEcCCC
Confidence            4555553  5666777766677777776664332221111 111110  112222222 3333332 2444555556666


Q ss_pred             cccceeecc----------CCCccCEEEEEEccCCC-EEEEE
Q 001163         1008 LECLKQFVP----------REASGPITHATYSCDSQ-SIYVA 1038 (1134)
Q Consensus      1008 ~~~~~~~~~----------~~h~~~v~~~~~s~dg~-~l~s~ 1038 (1134)
                      |+.+.-+..          ..|..-...+++.|++. +++||
T Consensus       206 GrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         206 GRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             CcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            665544432          12345667888888874 45554

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.02  E-value=10  Score=40.71  Aligned_cols=232  Identities=11%  Similarity=0.030  Sum_probs=107.3

Q ss_pred             CeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEec---CCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceE-E
Q 001163          845 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFM---PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEV-K  920 (1134)
Q Consensus       845 ~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~---~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~-~  920 (1134)
                      ....+.|..+ ..++++..+. .+-..+.|+.-..+.   .-.+....+.... ++..++ ++..|.|+.= .+.|+. .
T Consensus        63 ~l~~I~f~~~-~g~ivG~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l-~~~~G~iy~T-~DgG~tW~  137 (302)
T PF14870_consen   63 HLNSISFDGN-EGWIVGEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAEL-AGDRGAIYRT-TDGGKTWQ  137 (302)
T ss_dssp             EEEEEEEETT-EEEEEEETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEE-EETT--EEEE-SSTTSSEE
T ss_pred             eEEEEEecCC-ceEEEcCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEE-EcCCCcEEEe-CCCCCCee
Confidence            3567777643 4455555553 333333343333321   1223333444433 333333 3444543321 122221 1


Q ss_pred             EeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceE
Q 001163          921 TKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQI 1000 (1134)
Q Consensus       921 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i 1000 (1134)
                      .....-.+.+..+.-++||++++++..-....-||-....   .........     ..+..+.|+||+...+++..|.|
T Consensus       138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~---w~~~~r~~~-----~riq~~gf~~~~~lw~~~~Gg~~  209 (302)
T PF14870_consen  138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT---WQPHNRNSS-----RRIQSMGFSPDGNLWMLARGGQI  209 (302)
T ss_dssp             EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS----EEEE--SS-----S-EEEEEE-TTS-EEEEETTTEE
T ss_pred             EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc---ceEEccCcc-----ceehhceecCCCCEEEEeCCcEE
Confidence            2223344778889999999988888765555677754311   222222211     45999999999998888888888


Q ss_pred             EEEe-CCCccccee--eccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEE
Q 001163         1001 AIYE-APKLECLKQ--FVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVI 1077 (1134)
Q Consensus      1001 ~iwd-~~~~~~~~~--~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 1077 (1134)
                      ++=+ ....+....  .....-.-.+..++|.+++...++|+. |++ +...+.|+--.+-.....+|    +..+.+  
T Consensus       210 ~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~----~n~~~i--  281 (302)
T PF14870_consen  210 QFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVP----SNLYRI--  281 (302)
T ss_dssp             EEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSS----S---EE--
T ss_pred             EEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCC----CceEEE--
Confidence            8877 222222222  111111345899999999888876664 433 34556666544433222222    335555  


Q ss_pred             EecCCCCCEEEEEecCCcEEEE
Q 001163         1078 AGNPTDPNQFALGLTDGGVYII 1099 (1134)
Q Consensus      1078 ~~~p~~~~~l~s~~~Dg~v~vW 1099 (1134)
                      .|.+  ++.-.+.+.||.|.-|
T Consensus       282 ~f~~--~~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  282 VFVN--PDKGFVLGQDGVLLRY  301 (302)
T ss_dssp             EEEE--TTEEEEE-STTEEEEE
T ss_pred             EEcC--CCceEEECCCcEEEEe
Confidence            4443  3455566778876554

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=93.95  E-value=23  Score=44.40  Aligned_cols=23  Identities=22%  Similarity=0.127  Sum_probs=17.7

Q ss_pred             ccccEEEEEEecCCceeeeeccC
Q 001163          775 TAMRVSRLIYTNSGLAILALASN  797 (1134)
Q Consensus       775 ~~~~i~~l~~spdg~~l~~~~~d  797 (1134)
                      +-+.+.+++++|||..+++-..+
T Consensus       660 ~lnsp~alaVsPdg~v~IAD~gN  682 (1899)
T KOG4659|consen  660 KLNSPYALAVSPDGDVIIADSGN  682 (1899)
T ss_pred             ccCCcceEEECCCCcEEEecCCc
Confidence            56778899999999977655544

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.92  E-value=1.5  Score=51.46  Aligned_cols=112  Identities=15%  Similarity=0.193  Sum_probs=75.6

Q ss_pred             CEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEec-CCCcCEEEEeccccCCccEEEEecCCCcEEEEec-----
Q 001163          465 SVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE-GHESPVYSICPHHKENIQFIFSTATDGKIKAWLY-----  538 (1134)
Q Consensus       465 ~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~-----  538 (1134)
                      ...-+.-|.-++  ..+.-+....+.|||...+...+.-. ...+.|.++.|...++++.+++.+..+.|.++.-     
T Consensus        31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy  108 (631)
T PF12234_consen   31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY  108 (631)
T ss_pred             CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence            344444455555  33334445589999998887554322 3578899999999999999999999999999842     


Q ss_pred             CCCCc----eee--ec-CCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeC
Q 001163          539 DNLGS----RVD--YD-APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE  584 (1134)
Q Consensus       539 ~~~~~----~~~--~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~  584 (1134)
                      ....+    ...  +. ...++|.+..|.++|..++.++.      .+.++|-
T Consensus       109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN------qlfv~dk  155 (631)
T PF12234_consen  109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN------QLFVFDK  155 (631)
T ss_pred             hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC------EEEEECC
Confidence            11111    111  22 23368899999999988776642      4778774

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.90  E-value=1.5  Score=51.66  Aligned_cols=123  Identities=11%  Similarity=0.164  Sum_probs=77.9

Q ss_pred             EecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEecc-CccCceEEEEEe--eCCCEEEEEeCCCcEEEEE
Q 001163          879 TFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK-GHQKRITGLAFS--NTLNVLVSSGADSQLCVWS  955 (1134)
Q Consensus       879 ~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~-~h~~~V~~l~~s--~d~~~l~s~s~Dg~i~iwd  955 (1134)
                      ++.......+.+.-|. -++..++-+....+.|||...+.....-. ...+.|.++.|.  |||+.+++.|....|.++.
T Consensus        24 ~~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~  102 (631)
T PF12234_consen   24 TFETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT  102 (631)
T ss_pred             EEecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence            3433444555555555 45555555555689999999886432211 356789999986  7899999999999999986


Q ss_pred             CCCC----ccccc---eeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCC
Q 001163          956 TDGW----EKQAS---KFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAP 1006 (1134)
Q Consensus       956 ~~~~----~~~~~---~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~ 1006 (1134)
                      -...    .....   +.+.+. .+.+  .+|.+..|.+||.+ +++.++++.|+|-.
T Consensus       103 Q~R~dy~~~~p~w~~i~~i~i~-~~T~--h~Igds~Wl~~G~L-vV~sGNqlfv~dk~  156 (631)
T PF12234_consen  103 QLRYDYTNKGPSWAPIRKIDIS-SHTP--HPIGDSIWLKDGTL-VVGSGNQLFVFDKW  156 (631)
T ss_pred             ccchhhhcCCcccceeEEEEee-cCCC--CCccceeEecCCeE-EEEeCCEEEEECCC
Confidence            4211    11111   112221 2222  46889999999974 45567788888753

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PHA03098 kelch-like protein; Provisional

Probab=93.87  E-value=2.6  Score=50.56  Aligned_cols=151  Identities=7%  Similarity=-0.015  Sum_probs=71.9

Q ss_pred             ccEEEEecCC-----CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCC--CeEEEEEeCCCCeeEEEe
Q 001163          521 IQFIFSTATD-----GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG--ESYLVEWNESEGAVKRTY  593 (1134)
Q Consensus       521 ~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~--~~~i~~wd~~~~~~~~~~  593 (1134)
                      +.+++.|+.+     ..+..||..+..-...-..+.......+..-+++..+.||....+  ...+..||+.+.+....-
T Consensus       343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~  422 (534)
T PHA03098        343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS  422 (534)
T ss_pred             CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecC
Confidence            3677777765     346677766543222111111111111122356666666633221  245888998876544322


Q ss_pred             cCCCCCceEEEEEcCCCCEEEEEeCC--------CeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECC--
Q 001163          594 HGLGKRSVGVVQFDTTKNRFLAAGDE--------FMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND--  663 (1134)
Q Consensus       594 ~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d--  663 (1134)
                      .........++ ...++..++.||.+        ..+.+||..+++....-...........+.+  ++..++.|+.+  
T Consensus       423 ~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~  499 (534)
T PHA03098        423 PLPISHYGGCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYE  499 (534)
T ss_pred             CCCccccCceE-EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCC
Confidence            11111011122 22355566666632        2388899887765433211111111112222  66777777654  


Q ss_pred             ---CcEEEEEccCC
Q 001163          664 ---NGIKILANADG  674 (1134)
Q Consensus       664 ---g~i~iw~~~~~  674 (1134)
                         +.+.+||..+.
T Consensus       500 ~~~~~v~~yd~~~~  513 (534)
T PHA03098        500 YYINEIEVYDDKTN  513 (534)
T ss_pred             cccceeEEEeCCCC
Confidence               46777776654

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.68  E-value=3.4  Score=48.22  Aligned_cols=233  Identities=11%  Similarity=0.084  Sum_probs=118.6

Q ss_pred             CCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEe----cCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccce
Q 001163          843 EDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTF----MPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE  918 (1134)
Q Consensus       843 ~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~----~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~  918 (1134)
                      .+.+..+.|+.+..++++.-+|++.+|++. |+.+...    ......|..+.|.. +|  +|+-..+|.+.+-+-....
T Consensus        83 ~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~-~G--Vavlt~~g~v~~i~~~~~~  158 (829)
T KOG2280|consen   83 HGELIGMGWSDDEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFH-NG--VAVLTVSGQVILINGVEEP  158 (829)
T ss_pred             CCCeeeecccCCceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEec-Cc--eEEEecCCcEEEEcCCCcc
Confidence            347889999999888888889999999984 3333221    11223454444444 45  3333445555444322221


Q ss_pred             EEEeccC---ccCceEEEEEeeCCC---EEEEEe-CCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCE
Q 001163          919 VKTKLKG---HQKRITGLAFSNTLN---VLVSSG-ADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTH  991 (1134)
Q Consensus       919 ~~~~l~~---h~~~V~~l~~s~d~~---~l~s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~  991 (1134)
                      .+.++..   -.-+-.|-+..+++.   .++-.. ..+ ..+...+...   .........+    ..+..+..||.+++
T Consensus       159 ~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~---~q~~~~~~~~----~~~~ki~VS~n~~~  230 (829)
T KOG2280|consen  159 KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESR---VQLHALSWPN----SSVVKISVSPNRRF  230 (829)
T ss_pred             hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccc---ccccccCCCC----ceEEEEEEcCCcce
Confidence            2222222   111112222222211   111111 011 1111111111   1111112222    35788999999999


Q ss_pred             EEE-EeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCC
Q 001163          992 LLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSL 1070 (1134)
Q Consensus       992 l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~ 1070 (1134)
                      |+. ...|.|.+-+++..++...+.+..|..+ ..++|..+.         ..+.+|+.. ...+....          +
T Consensus       231 laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p-~qm~Wcgnd---------aVvl~~e~~-l~lvgp~g----------d  289 (829)
T KOG2280|consen  231 LALYTETGKIWVVSIDLSQILCEFNCTDHDPP-KQMAWCGND---------AVVLSWEVN-LMLVGPPG----------D  289 (829)
T ss_pred             EEEEecCCcEEEEecchhhhhhccCCCCCCch-HhceeecCC---------ceEEEEeee-EEEEcCCC----------C
Confidence            999 7889999999998888888876554333 266665433         444455522 11111111          1


Q ss_pred             CceeEEEEecCCCCCEEEEEecCCcEEEEeCCCCCCCccCCCCCC
Q 001163         1071 RVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGRWGTSPPNE 1115 (1134)
Q Consensus      1071 ~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~~~~~~~~~~~ 1115 (1134)
                      .|.     |-- +...+++.--|| |||..-++-|.--.++++.|
T Consensus       290 ~V~-----f~y-d~t~~l~~E~DG-VRI~t~t~~EFl~rvp~~~e  327 (829)
T KOG2280|consen  290 SVQ-----FYY-DETAILSAEVDG-VRIITSTSHEFLQRVPAETE  327 (829)
T ss_pred             ccc-----ccc-CCCceeeeccCe-eEEeccchHHHHHhCChhhh
Confidence            111     111 233456666777 78887777776555555555

>PHA03098 kelch-like protein; Provisional

Probab=93.61  E-value=3.4  Score=49.49  Aligned_cols=195  Identities=10%  Similarity=-0.002  Sum_probs=91.3

Q ss_pred             CCCCEEEEEeCCC------EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC-----CeEEEEECCC
Q 001163          428 PDGTLFGVAYSKH------IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED-----RVIKVWDAVT  496 (1134)
Q Consensus       428 pd~~~las~s~dg------~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d-----~~i~iwd~~~  496 (1134)
                      .++..++.|+.++      .+..||..+++-.. ...+.........+.  -+++  +++.||.+     ..+..||..+
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~~--~~~~--lyv~GG~~~~~~~~~v~~yd~~~  367 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVTV--FNNR--IYVIGGIYNSISLNTVESWKPGE  367 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEEE--ECCE--EEEEeCCCCCEecceEEEEcCCC
Confidence            4566777776542      46788887765322 112221111122222  2455  56666654     3577788776


Q ss_pred             CceeEE--ecCCCcCEEEEeccccCCccEEEEecCC------CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEE
Q 001163          497 GTKQYI--FEGHESPVYSICPHHKENIQFIFSTATD------GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFS  568 (1134)
Q Consensus       497 ~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  568 (1134)
                      ++-...  +....... +++.   -++.+.+.|+.+      ..+..||..+..-...-..+.......+..-+++..+.
T Consensus       368 ~~W~~~~~lp~~r~~~-~~~~---~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~  443 (534)
T PHA03098        368 SKWREEPPLIFPRYNP-CVVN---VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVI  443 (534)
T ss_pred             CceeeCCCcCcCCccc-eEEE---ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEE
Confidence            653321  11111111 1111   133666667632      35778887654322211111111111122335666666


Q ss_pred             EecCCCC----CeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCce
Q 001163          569 CGTNKEG----ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNVNL  632 (1134)
Q Consensus       569 ~~~~~~~----~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~  632 (1134)
                      ||.+...    ...+.+||..+++....-.......-..++. .++..++.||.+     ..+.+||..+.+.
T Consensus       444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  515 (534)
T PHA03098        444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTNTW  515 (534)
T ss_pred             CCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence            6543221    2348889988776543221111101111222 256666677643     4678888776654

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.56  E-value=4.1  Score=47.66  Aligned_cols=186  Identities=12%  Similarity=0.149  Sum_probs=101.6

Q ss_pred             CeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEec----cCccCceEEEEEeeCC
Q 001163          864 GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKL----KGHQKRITGLAFSNTL  939 (1134)
Q Consensus       864 g~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l----~~h~~~V~~l~~s~d~  939 (1134)
                      -.|+|+++ +|+.+..+.-..+.+..+.|+.  ..-|.+...+|+++||++. |+.+...    ......|..+.|..+|
T Consensus        64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~G  139 (829)
T KOG2280|consen   64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSD--DEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNG  139 (829)
T ss_pred             eeEEEEec-cccchHHHHhcCCCeeeecccC--CceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCc
Confidence            34888887 5666666554455889999996  4566677899999999986 3333221    2233446666666666


Q ss_pred             CEEEEEeCCCcEEEE-ECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE--Eeece--EEEEeCCCccc-cee
Q 001163          940 NVLVSSGADSQLCVW-STDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA--VHETQ--IAIYEAPKLEC-LKQ 1013 (1134)
Q Consensus       940 ~~l~s~s~Dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~--~~d~~--i~iwd~~~~~~-~~~ 1013 (1134)
                      -.+.+  .+|.+.+- +......  ...-.++...    ....|...-++++....  .-+-.  ..++..++... ...
T Consensus       140 Vavlt--~~g~v~~i~~~~~~~~--~~~~diP~~~----~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~  211 (829)
T KOG2280|consen  140 VAVLT--VSGQVILINGVEEPKL--RKMPDIPYNE----LPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHA  211 (829)
T ss_pred             eEEEe--cCCcEEEEcCCCcchh--hhCCCCCCcc----CCCcceeEecCCCcceeEEeechhhhhcccceecccccccc
Confidence            44443  34544433 3222111  0111111111    11233333333221111  11100  11122211111 111


Q ss_pred             eccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcc
Q 001163         1014 FVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAY 1063 (1134)
Q Consensus      1014 ~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~ 1063 (1134)
                      +.  .-.+.+..+..||++++|+-=..+|.|.+-+.+..+.+|.+.....
T Consensus       212 ~~--~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~  259 (829)
T KOG2280|consen  212 LS--WPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDH  259 (829)
T ss_pred             cC--CCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCC
Confidence            11  1136788999999999999999999999999999998888775443

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=93.44  E-value=25  Score=43.18  Aligned_cols=179  Identities=13%  Similarity=0.058  Sum_probs=102.7

Q ss_pred             cEEEEEcccceEEEeccCcc----CceEEEEEeeCCC--EEEEEeC-----------CCcEEEEECCCCccccceeeeec
Q 001163          908 SIQIYNVRVDEVKTKLKGHQ----KRITGLAFSNTLN--VLVSSGA-----------DSQLCVWSTDGWEKQASKFLTIP  970 (1134)
Q Consensus       908 ~i~iwd~~~~~~~~~l~~h~----~~V~~l~~s~d~~--~l~s~s~-----------Dg~i~iwd~~~~~~~~~~~~~~~  970 (1134)
                      .|++.|..+++.+..+....    -.|.++.|+....  +++.++.           +|.++.|++-.... +..++...
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~-~lellh~T  932 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGD-KLELLHKT  932 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCc-eeeeeecc
Confidence            58889988887666554322    2456677765433  3333321           33455555433221 11122111


Q ss_pred             CCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEE--ee
Q 001163          971 NGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGV--LT 1048 (1134)
Q Consensus       971 ~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~v--wd 1048 (1134)
                      +-      .-.-.++.|-..++++|-...+++||+-..+.++..........|+++++-  +..+++|...-.|.+  |+
T Consensus       933 ~~------~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~ 1004 (1205)
T KOG1898|consen  933 EI------PGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYR 1004 (1205)
T ss_pred             CC------CccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEe
Confidence            11      122356667777888899999999999988888777654446678888764  667877776655554  44


Q ss_pred             cCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCCCC
Q 001163         1049 ASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAE 1105 (1134)
Q Consensus      1049 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~ 1105 (1134)
                      -+..+++.....+.      .-.|+.+.+   - |-+.++.+..=|.+.+-.++..-
T Consensus      1005 ~~~n~l~~fadD~~------pR~Vt~~~~---l-D~~tvagaDrfGNi~~vR~P~d~ 1051 (1205)
T KOG1898|consen 1005 REDNQLIVFADDPV------PRHVTALEL---L-DYDTVAGADRFGNIAVVRIPPDV 1051 (1205)
T ss_pred             cCCCeEEEEeCCCc------cceeeEEEE---e-cCCceeeccccCcEEEEECCCcc
Confidence            44444332222111      112333322   2 56778888888888888876443

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=93.04  E-value=2.4  Score=46.03  Aligned_cols=160  Identities=14%  Similarity=0.079  Sum_probs=99.9

Q ss_pred             CCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEE-e-cCCCC----CeE-EEEEcCCCCcEEEEEeCCCcEEEE-E
Q 001163          842 PEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTT-F-MPPPP----AAT-FLAFHPQDNNIIAIGMEDSSIQIY-N  913 (1134)
Q Consensus       842 h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~-~-~~~~~----~v~-~l~~sp~~~~~la~g~~dg~i~iw-d  913 (1134)
                      ....+..+-..|||+.+..-+..++.++++.+...... + ....+    .|+ .+..-. ++.-+.++..||-|.-| |
T Consensus       219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd  297 (733)
T COG4590         219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD  297 (733)
T ss_pred             CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence            45667788899999999988888888998865443221 1 11112    122 222233 67778888999988776 4


Q ss_pred             cccc-e----EEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCC
Q 001163          914 VRVD-E----VKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLD  988 (1134)
Q Consensus       914 ~~~~-~----~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d  988 (1134)
                      +..+ .    .++.++-...++..+.--.+.+-+++-+..|++.++.-...+.    .+.....     ..+..++|||.
T Consensus       298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~----lL~~~~~-----~~~~~~~~Sp~  368 (733)
T COG4590         298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKL----LLFERAY-----QAPQLVAMSPN  368 (733)
T ss_pred             eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcc----eehhhhh-----cCcceeeeCcc
Confidence            4332 1    1223333334444444333456677888889888876544331    1111110     24677999999


Q ss_pred             CCEEEEEeeceEEEEeCCCcccc
Q 001163          989 QTHLLAVHETQIAIYEAPKLECL 1011 (1134)
Q Consensus       989 g~~l~~~~d~~i~iwd~~~~~~~ 1011 (1134)
                      +.+|++-..|.++++.+++....
T Consensus       369 ~~~Ll~e~~gki~~~~l~Nr~Pe  391 (733)
T COG4590         369 QAYLLSEDQGKIRLAQLENRNPE  391 (733)
T ss_pred             cchheeecCCceEEEEecCCCCC
Confidence            99999988899999998866543

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.85  E-value=0.019  Score=62.28  Aligned_cols=241  Identities=16%  Similarity=0.175  Sum_probs=137.3

Q ss_pred             EEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEE
Q 001163          780 SRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVM  859 (1134)
Q Consensus       780 ~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la  859 (1134)
                      -...+.+.+..++.++.+..+..||-..                      ......     ...+....++|+.+|..++
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~ag----------------------q~~le~-----n~tg~aldm~wDkegdvla   90 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDKAG----------------------QVILEL-----NPTGKALDMAWDKEGDVLA   90 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhhhc----------------------ceeccc-----CCchhHhhhhhccccchhh
Confidence            3456677777788888887777775332                      111111     1345556788888887766


Q ss_pred             Eee--CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEee
Q 001163          860 SAS--GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSN  937 (1134)
Q Consensus       860 ~~s--dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~  937 (1134)
                      ...  .+.+.+||+.+......-.+....-.-+.|++ +...++.|...|.+.|++..+.+.+...-.|..+++++++.+
T Consensus        91 vlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l  169 (615)
T KOG2247|consen   91 VLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL  169 (615)
T ss_pred             hhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence            654  68899999965332211111222233378999 889999999999999999988777766666999999999998


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCC-CceEEEEcCCCCEEEEEeeceEEEE--eCC--Ccccce
Q 001163          938 TLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASAL-ADTRVQFHLDQTHLLAVHETQIAIY--EAP--KLECLK 1012 (1134)
Q Consensus       938 d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~v~~l~fs~dg~~l~~~~d~~i~iw--d~~--~~~~~~ 1012 (1134)
                      .+ +.+.++.|..+.+-...+...   ...++......... -...=.|..-|..+.....+.+.+.  .++  .+..--
T Consensus       170 Ed-~vil~dcd~~L~v~~qegeta---~ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval  245 (615)
T KOG2247|consen  170 ED-YVILCDCDNTLSVTTQEGETA---SLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVAL  245 (615)
T ss_pred             cc-eeeecCcHHHHHHhhhcccee---eeeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccce
Confidence            77 666777776655444333110   11111110000000 0001123333444443222222211  111  111111


Q ss_pred             eeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcce
Q 001163         1013 QFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLR 1055 (1134)
Q Consensus      1013 ~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~ 1055 (1134)
                      .+.  .-.+.+.++.|--||..+. +-+-|.|..-.+.++++.
T Consensus       246 ~fq--~~~gni~cyrwylDg~i~i-gf~ag~iV~iS~h~aeLg  285 (615)
T KOG2247|consen  246 QFQ--EKYGNIHCYRWYLDGYILI-GFDAGYIVSISAHNAELG  285 (615)
T ss_pred             Eee--ecCCceeEEEEeccccccc-cccceeEEEEeccchHHH
Confidence            232  2357788888888877544 555566777777777654

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.71  E-value=1  Score=54.66  Aligned_cols=146  Identities=13%  Similarity=0.086  Sum_probs=95.5

Q ss_pred             CCCeeEEEEcCCCCeEEEee--CC-eEEEEEccCCeEEE-----EecC------CCCCeEEEEEcCCCCcEEEEEeCCCc
Q 001163          843 EDAVPCFALSKNDSYVMSAS--GG-KISLFNMMTFKTMT-----TFMP------PPPAATFLAFHPQDNNIIAIGMEDSS  908 (1134)
Q Consensus       843 ~~~v~~v~~s~dg~~la~~s--dg-~i~lwd~~~~~~~~-----~~~~------~~~~v~~l~~sp~~~~~la~g~~dg~  908 (1134)
                      .-++..++..+|++..++..  +| .|..||+.+...-+     .+..      ......++.|.|.-.-..|+...|+.
T Consensus       100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence            45566777788887766554  33 59999986533221     1111      22345678888743445677788999


Q ss_pred             EEEEEcccceE-EEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcC
Q 001163          909 IQIYNVRVDEV-KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHL  987 (1134)
Q Consensus       909 i~iwd~~~~~~-~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~  987 (1134)
                      |++..+.-... ...+. -....++++|+|.|+.++.|-..|++.-|...-............+     ...|.+++|-.
T Consensus       180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e-----~yrvl~v~Wl~  253 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEE-----NYRVLSVTWLS  253 (1405)
T ss_pred             hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCC-----CcceeEEEEec
Confidence            99987754322 22322 4566899999999999999999999999986653222111111112     14689999988


Q ss_pred             CCCEEEE
Q 001163          988 DQTHLLA  994 (1134)
Q Consensus       988 dg~~l~~  994 (1134)
                      ...+|++
T Consensus       254 t~eflvv  260 (1405)
T KOG3630|consen  254 TQEFLVV  260 (1405)
T ss_pred             ceeEEEE
Confidence            8888887

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=92.53  E-value=30  Score=43.23  Aligned_cols=167  Identities=14%  Similarity=0.142  Sum_probs=104.3

Q ss_pred             CCCCeEEEEEc---CC---CCcEEEEEeCCCcEEEEE------ccc---------ceEEEeccCc---cCceEEEEEeeC
Q 001163          883 PPPAATFLAFH---PQ---DNNIIAIGMEDSSIQIYN------VRV---------DEVKTKLKGH---QKRITGLAFSNT  938 (1134)
Q Consensus       883 ~~~~v~~l~~s---p~---~~~~la~g~~dg~i~iwd------~~~---------~~~~~~l~~h---~~~V~~l~~s~d  938 (1134)
                      ...+|..|.|+   ..   ..++|++-. ...+.|+.      +..         ..++..+..+   ..+..+++|+|.
T Consensus        78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~  156 (765)
T PF10214_consen   78 DGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW  156 (765)
T ss_pred             CCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence            45678888887   21   224555544 45677776      111         1223333321   235678999974


Q ss_pred             -CCEEEEEeCCCcEEEEECCCCccccceeeee---cCCCC-C---CCCCceEEEEcCCCCEEEEEeeceEEEEeCCCccc
Q 001163          939 -LNVLVSSGADSQLCVWSTDGWEKQASKFLTI---PNGRT-A---SALADTRVQFHLDQTHLLAVHETQIAIYEAPKLEC 1010 (1134)
Q Consensus       939 -~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~---~~~~~-~---~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~ 1010 (1134)
                       ...+|.....|...||++..........+..   ..|.. .   ..+.-..+.|.++...|++.....+.++|+.+...
T Consensus       157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~  236 (765)
T PF10214_consen  157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQ  236 (765)
T ss_pred             ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCCCCc
Confidence             4689999999999999993322222212211   11221 0   01345689999999999999999999999998876


Q ss_pred             ceeeccCCCccCEEEEEEccC--CCEEEEEecCCcEEEeecCCC
Q 001163         1011 LKQFVPREASGPITHATYSCD--SQSIYVAFEEGSVGVLTASTL 1052 (1134)
Q Consensus      1011 ~~~~~~~~h~~~v~~~~~s~d--g~~l~s~s~Dg~i~vwd~~~~ 1052 (1134)
                      ...+........|..+.-+++  +..++-.  ...|.+.++.+.
T Consensus       237 ~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~  278 (765)
T PF10214_consen  237 TEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS  278 (765)
T ss_pred             cchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence            442333345788999999987  3333322  367888888774

These proteins are found in fungi.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=92.44  E-value=14  Score=37.83  Aligned_cols=196  Identities=8%  Similarity=0.079  Sum_probs=107.3

Q ss_pred             EEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEE
Q 001163          780 SRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVM  859 (1134)
Q Consensus       780 ~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la  859 (1134)
                      ..+..-|||..-++-+..+..++                       |.++.......++............|.++|.+-.
T Consensus       107 hgiv~gpdg~~Witd~~~aI~R~-----------------------dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWF  163 (353)
T COG4257         107 HGIVVGPDGSAWITDTGLAIGRL-----------------------DPKTLEVTRFPLPLEHADANLETAVFDPWGNLWF  163 (353)
T ss_pred             ceEEECCCCCeeEecCcceeEEe-----------------------cCcccceEEeecccccCCCcccceeeCCCccEEE
Confidence            34566677765555444444444                       5555555555555433456677889999999988


Q ss_pred             EeeCCeEEEEEccCCeEEEEecCC-CCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccce--EEEeccCccCceEEEEEe
Q 001163          860 SASGGKISLFNMMTFKTMTTFMPP-PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE--VKTKLKGHQKRITGLAFS  936 (1134)
Q Consensus       860 ~~sdg~i~lwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~--~~~~l~~h~~~V~~l~~s  936 (1134)
                      ++..|----.|..+ ..+..+... ...-..++..| +|...++.-.+..|-..|..++.  .+-.-......-..+--+
T Consensus       164 t~q~G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atp-dGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsd  241 (353)
T COG4257         164 TGQIGAYGRLDPAR-NVISVFPAPQGGGPYGICATP-DGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSD  241 (353)
T ss_pred             eeccccceecCccc-CceeeeccCCCCCCcceEECC-CCcEEEEeccccceEEcccccCCcceecCCCcccccccccccC
Confidence            88643211122211 122333322 23457788889 77777776667777777766652  221112212223445557


Q ss_pred             eCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCC
Q 001163          937 NTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPK 1007 (1134)
Q Consensus       937 ~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~ 1007 (1134)
                      |.|+..+|....+.+..+|.....   +....++....    .-.++.....++.-.. ...+.|.-+|-++
T Consensus       242 pig~~wittwg~g~l~rfdPs~~s---W~eypLPgs~a----rpys~rVD~~grVW~sea~agai~rfdpet  306 (353)
T COG4257         242 PIGRAWITTWGTGSLHRFDPSVTS---WIEYPLPGSKA----RPYSMRVDRHGRVWLSEADAGAIGRFDPET  306 (353)
T ss_pred             ccCcEEEeccCCceeeEeCccccc---ceeeeCCCCCC----CcceeeeccCCcEEeeccccCceeecCccc
Confidence            788888887778888888866522   23333332221    2344555555544333 2334455455443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.41  E-value=22  Score=43.49  Aligned_cols=72  Identities=10%  Similarity=0.183  Sum_probs=51.7

Q ss_pred             CCeEEEEEcCCCCcEEEEEeCCCcEEEEEccc----------ce--EEE-ec--------cCccCceEEEEEeeC---CC
Q 001163          885 PAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV----------DE--VKT-KL--------KGHQKRITGLAFSNT---LN  940 (1134)
Q Consensus       885 ~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~----------~~--~~~-~l--------~~h~~~V~~l~~s~d---~~  940 (1134)
                      -.|..+.++| +|++||..+..| |.|-.+..          |+  ..+ ++        ..+...|..+.|+|.   +.
T Consensus        85 f~v~~i~~n~-~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   85 FEVHQISLNP-TGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             eeEEEEEECC-CCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            3588899999 899999888765 55544431          11  111 11        134567899999986   47


Q ss_pred             EEEEEeCCCcEEEEECCC
Q 001163          941 VLVSSGADSQLCVWSTDG  958 (1134)
Q Consensus       941 ~l~s~s~Dg~i~iwd~~~  958 (1134)
                      +|+.-..|+++++||+..
T Consensus       163 ~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             eEEEEecCCEEEEEecCC
Confidence            899999999999999975

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=92.39  E-value=16  Score=38.33  Aligned_cols=207  Identities=10%  Similarity=0.113  Sum_probs=121.1

Q ss_pred             eeEEEEcCCCCeEEEee-CCeEEEEEcc-------CCeEEEEecC-----CCCCeEEEEEcCCCCcE------------E
Q 001163          846 VPCFALSKNDSYVMSAS-GGKISLFNMM-------TFKTMTTFMP-----PPPAATFLAFHPQDNNI------------I  900 (1134)
Q Consensus       846 v~~v~~s~dg~~la~~s-dg~i~lwd~~-------~~~~~~~~~~-----~~~~v~~l~~sp~~~~~------------l  900 (1134)
                      -+.++++|.+.+-++.. .+...+||..       ...++.++..     .....+.+.|.. ...+            +
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSRF  103 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCcccceeE
Confidence            46899999998777665 6889999986       1223334432     124577788874 2222            4


Q ss_pred             EEEeCCCcEEEEEcccceE-----EEecc-CccCce-EEEEEeeC--CCEEEE-EeCCCcEEEEECCCCcccc-ceee--
Q 001163          901 AIGMEDSSIQIYNVRVDEV-----KTKLK-GHQKRI-TGLAFSNT--LNVLVS-SGADSQLCVWSTDGWEKQA-SKFL--  967 (1134)
Q Consensus       901 a~g~~dg~i~iwd~~~~~~-----~~~l~-~h~~~V-~~l~~s~d--~~~l~s-~s~Dg~i~iwd~~~~~~~~-~~~~--  967 (1134)
                      +.+++||+|.=|...-+..     ...+. .-.+.| ..+++...  +.+|.. --..++|.++|-.-.+... ....  
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP  183 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP  183 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence            6678999999998532211     11221 112333 35666533  455554 4567889999854422100 0000  


Q ss_pred             eecCCCCCCCCCceEEEEcCCCCEEEE-E-------------eeceEEEEeCCCcccceeeccCCCccCEEEEEEcc---
Q 001163          968 TIPNGRTASALADTRVQFHLDQTHLLA-V-------------HETQIAIYEAPKLECLKQFVPREASGPITHATYSC--- 1030 (1134)
Q Consensus       968 ~~~~~~~~~~~~v~~l~fs~dg~~l~~-~-------------~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~--- 1030 (1134)
                      .++.+..+  -.|..+    .+++.++ +             .-|.|-+||.. |..++.+..++.-...+.|+..|   
T Consensus       184 ~iPagyAP--FnIqni----g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~F  256 (336)
T TIGR03118       184 ALPAGYAP--FNVQNL----GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESF  256 (336)
T ss_pred             CCCCCCCC--cceEEE----CCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhh
Confidence            01111111  011111    1222222 2             23578899986 77777776666666778888855   


Q ss_pred             ---CCCEEEEEecCCcEEEeecCCCcceeecCC
Q 001163         1031 ---DSQSIYVAFEEGSVGVLTASTLRLRCRINP 1060 (1134)
Q Consensus      1031 ---dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~ 1060 (1134)
                         .|.+|+----||+|-.||..+|+.+..+..
T Consensus       257 G~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~  289 (336)
T TIGR03118       257 GSLSGALLVGNFGDGTINAYDPQSGAQLGQLLD  289 (336)
T ss_pred             CCCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence               577888777899999999999998877663

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=92.21  E-value=24  Score=39.84  Aligned_cols=152  Identities=8%  Similarity=0.046  Sum_probs=86.3

Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEEcccceE--EEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccc
Q 001163          887 ATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEV--KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQAS  964 (1134)
Q Consensus       887 v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~  964 (1134)
                      ...+..++ ++.+++++.....++-||-  |+.  ...-..-...++++.|.+++..++.+ .+|. .+|....++....
T Consensus       241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~-l~~S~d~G~~~~~  315 (398)
T PLN00033        241 FSTVNRSP-DGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGG-LYVSKGTGLTEED  315 (398)
T ss_pred             eeeEEEcC-CCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCce-EEEecCCCCcccc
Confidence            34456667 6777776654433333442  221  11112234568899999998877655 5564 4445444432110


Q ss_pred             -eeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeec-cCCCccCEEEEEEccCCCEEEEEecCC
Q 001163          965 -KFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFV-PREASGPITHATYSCDSQSIYVAFEEG 1042 (1134)
Q Consensus       965 -~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~-~~~h~~~v~~~~~s~dg~~l~s~s~Dg 1042 (1134)
                       ..........  ...+..+.|.+|+..++++..|.+.... ..|+...... ...-......+.|.++++.+++ +.+|
T Consensus       316 ~~f~~~~~~~~--~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G  391 (398)
T PLN00033        316 FDFEEADIKSR--GFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDG  391 (398)
T ss_pred             cceeecccCCC--CcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE-eCCc
Confidence             1111111101  1347889999999999999888777654 4444433322 1222467889999877776665 4678


Q ss_pred             cEEEe
Q 001163         1043 SVGVL 1047 (1134)
Q Consensus      1043 ~i~vw 1047 (1134)
                      .|.-|
T Consensus       392 ~il~~  396 (398)
T PLN00033        392 VLLRY  396 (398)
T ss_pred             EEEEe
Confidence            77655

>PHA02790 Kelch-like protein; Provisional

Probab=92.12  E-value=6.7  Score=46.00  Aligned_cols=183  Identities=9%  Similarity=-0.013  Sum_probs=89.8

Q ss_pred             CCCeEEEee-C-----CeEEEEEccCCeEEE--EecCCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEEcccceEE--E
Q 001163          854 NDSYVMSAS-G-----GKISLFNMMTFKTMT--TFMPPPPAATFLAFHPQDNNIIAIGMEDS--SIQIYNVRVDEVK--T  921 (1134)
Q Consensus       854 dg~~la~~s-d-----g~i~lwd~~~~~~~~--~~~~~~~~v~~l~~sp~~~~~la~g~~dg--~i~iwd~~~~~~~--~  921 (1134)
                      ++.++++|+ +     .++..||..+.+-..  .+.........++  - ++.+.+.|+.++  .+..||..+++-.  .
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~  347 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--A-NNKLYVVGGLPNPTSVERWFHGDAAWVNMP  347 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--E-CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence            455556665 3     246778876644222  2221111222222  2 678888888643  6788887655322  2


Q ss_pred             eccCccCceEEEEEeeCCCEEEEEeCCC---cEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeec
Q 001163          922 KLKGHQKRITGLAFSNTLNVLVSSGADS---QLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHET  998 (1134)
Q Consensus       922 ~l~~h~~~V~~l~~s~d~~~l~s~s~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~  998 (1134)
                      .+.....  ...+..-+|+..+.||.++   .+..||..+++   +.......  .+   .....+..-+|+..+.|  |
T Consensus       348 ~l~~~r~--~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~---W~~~~~m~--~~---r~~~~~~~~~~~IYv~G--G  415 (480)
T PHA02790        348 SLLKPRC--NPAVASINNVIYVIGGHSETDTTTEYLLPNHDQ---WQFGPSTY--YP---HYKSCALVFGRRLFLVG--R  415 (480)
T ss_pred             CCCCCCc--ccEEEEECCEEEEecCcCCCCccEEEEeCCCCE---EEeCCCCC--Cc---cccceEEEECCEEEEEC--C
Confidence            2221111  1122234788888888654   46778876643   22221111  11   01112234456655555  4


Q ss_pred             eEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecC-----CcEEEeecCCCc
Q 001163          999 QIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEE-----GSVGVLTASTLR 1053 (1134)
Q Consensus       999 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D-----g~i~vwd~~~~~ 1053 (1134)
                      .+.+||..+.+....-.. .+...-.+++ .-+|+..+.|+.+     .+|.+||..+++
T Consensus       416 ~~e~ydp~~~~W~~~~~m-~~~r~~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        416 NAEFYCESSNTWTLIDDP-IYPRDNPELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             ceEEecCCCCcEeEcCCC-CCCccccEEE-EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence            577898876654322111 1111111222 2377777888754     346666666554

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=92.06  E-value=13  Score=41.91  Aligned_cols=148  Identities=11%  Similarity=0.076  Sum_probs=88.1

Q ss_pred             CCeeEEEEcCCCCeEEEeeCCeEE-EEEccCCeEE--EEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccce--
Q 001163          844 DAVPCFALSKNDSYVMSASGGKIS-LFNMMTFKTM--TTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE--  918 (1134)
Q Consensus       844 ~~v~~v~~s~dg~~la~~sdg~i~-lwd~~~~~~~--~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~--  918 (1134)
                      +....+..++||.+++.+..|.+. -||-  ++..  ..-......++.+.+.+ ++.+++++ .+|.+. +....++  
T Consensus       239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l~-~S~d~G~~~  313 (398)
T PLN00033        239 GTFSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRA-DGGLWLLT-RGGGLY-VSKGTGLTE  313 (398)
T ss_pred             cceeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcC-CCCEEEEe-CCceEE-EecCCCCcc
Confidence            345567788999999999877643 3443  2221  11222345689999998 77777655 556544 3444443  


Q ss_pred             ---EEEeccCc--cCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEE
Q 001163          919 ---VKTKLKGH--QKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLL  993 (1134)
Q Consensus       919 ---~~~~l~~h--~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~  993 (1134)
                         ........  ...+.++.|.+++..++ ++.+|.+.... +.++.  +.........   ......+.|.++++..+
T Consensus       314 ~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a-~G~~G~v~~s~-D~G~t--W~~~~~~~~~---~~~ly~v~f~~~~~g~~  386 (398)
T PLN00033        314 EDFDFEEADIKSRGFGILDVGYRSKKEAWA-AGGSGILLRST-DGGKS--WKRDKGADNI---AANLYSVKFFDDKKGFV  386 (398)
T ss_pred             cccceeecccCCCCcceEEEEEcCCCcEEE-EECCCcEEEeC-CCCcc--eeEccccCCC---CcceeEEEEcCCCceEE
Confidence               22222221  23488999998876555 55677666553 44331  1111111111   13577899999999999


Q ss_pred             EEeeceEEEE
Q 001163          994 AVHETQIAIY 1003 (1134)
Q Consensus       994 ~~~d~~i~iw 1003 (1134)
                      ++.+|.|.-|
T Consensus       387 ~G~~G~il~~  396 (398)
T PLN00033        387 LGNDGVLLRY  396 (398)
T ss_pred             EeCCcEEEEe
Confidence            9999887665

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.81  E-value=7.3  Score=48.77  Aligned_cols=147  Identities=15%  Similarity=0.201  Sum_probs=94.2

Q ss_pred             eCCCcEEEEEcccceEEEeccCccCceEEEEEe--------eCCCEEEEEeCCCcEEEEECCCCcccccee-----eeec
Q 001163          904 MEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFS--------NTLNVLVSSGADSQLCVWSTDGWEKQASKF-----LTIP  970 (1134)
Q Consensus       904 ~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s--------~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-----~~~~  970 (1134)
                      +.|..+.+|+..++.....+.+-+..|..|..-        |.=+++...+.--.|.++-+.-.+......     +++.
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            457889999999987788888877777776543        233444444445557777654433222111     1122


Q ss_pred             CCCCCCCCCceEEEEcCCCCEEEEEeeceEEE--EeCCCc---c-ccee-------------e-c-cCCCccCEEEEEEc
Q 001163          971 NGRTASALADTRVQFHLDQTHLLAVHETQIAI--YEAPKL---E-CLKQ-------------F-V-PREASGPITHATYS 1029 (1134)
Q Consensus       971 ~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~i--wd~~~~---~-~~~~-------------~-~-~~~h~~~v~~~~~s 1029 (1134)
                      ..    +..|.++....+|+.+.+|.||.|+-  |....+   + |-+.             + . ...+.++|..++..
T Consensus       176 ~d----g~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID  251 (1311)
T KOG1900|consen  176 VD----GVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID  251 (1311)
T ss_pred             cC----CceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence            21    14588999899999999998885442  222211   1 1100             0 0 12557799999998


Q ss_pred             cCCCEEEEEecCCcEEEeecCC-Ccc
Q 001163         1030 CDSQSIYVAFEEGSVGVLTAST-LRL 1054 (1134)
Q Consensus      1030 ~dg~~l~s~s~Dg~i~vwd~~~-~~~ 1054 (1134)
                      .....|.+-++.|+|++||+.. |..
T Consensus       252 ~SR~IlY~lsek~~v~~Y~i~~~G~~  277 (1311)
T KOG1900|consen  252 NSRNILYVLSEKGTVSAYDIGGNGLG  277 (1311)
T ss_pred             cccceeeeeccCceEEEEEccCCCcc
Confidence            8888899999999999999977 443

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=91.51  E-value=26  Score=38.80  Aligned_cols=197  Identities=14%  Similarity=0.139  Sum_probs=103.2

Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEe--ccccCCccE--EEEec-CC---CcEEEEecCCCCceee-ecC
Q 001163          479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSIC--PHHKENIQF--IFSTA-TD---GKIKAWLYDNLGSRVD-YDA  549 (1134)
Q Consensus       479 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~--~~~~~~~~~--l~s~s-~d---g~i~vwd~~~~~~~~~-~~~  549 (1134)
                      +++....++-+.+||+ .|+.++.+..  +.++.+.  ....-+|..  |+.++ .+   .+|++|.++....... +..
T Consensus        70 lIigTdK~~GL~VYdL-~Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~  146 (381)
T PF02333_consen   70 LIIGTDKKGGLYVYDL-DGKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTD  146 (381)
T ss_dssp             EEEEEETTTEEEEEET-TS-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CB
T ss_pred             eEEEEeCCCCEEEEcC-CCcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCC
Confidence            6888888899999995 6777776642  2333332  211112222  33333 32   4699998875333222 211


Q ss_pred             -------CCCCeeEEEE--Cc-CCCEEEEEecCCCCC-eEEEEEeCCCC----eeEEEecCCCCCceEEEEEcCCCCEEE
Q 001163          550 -------PGHSSTMMAY--SA-DGARLFSCGTNKEGE-SYLVEWNESEG----AVKRTYHGLGKRSVGVVQFDTTKNRFL  614 (1134)
Q Consensus       550 -------~~~~v~~~~~--s~-~~~~l~~~~~~~~~~-~~i~~wd~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~  614 (1134)
                             ....++.+|+  ++ +|...+.... +++. ....+++-..+    +.+++|....  .+..|.......+|+
T Consensus       147 ~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~-k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGCVVDDe~g~LY  223 (381)
T PF02333_consen  147 PAAPIATDLSEPYGLCLYRSPSTGALYAFVNG-KDGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGCVVDDETGRLY  223 (381)
T ss_dssp             TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE-TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEEEEETTTTEEE
T ss_pred             CCcccccccccceeeEEeecCCCCcEEEEEec-CCceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEEEEecccCCEE
Confidence                   1124566766  44 4555444432 2222 12333333344    5677887654  577888888889999


Q ss_pred             EEeCCCeEEEEEcCCC-----ceeEEEecCCCCCCcceEEEc--CCC-cEE-EEEECCCcEEEEEccCCceeEEEe
Q 001163          615 AAGDEFMIKFWDMDNV-----NLLASIDADGGLQASPCIRFN--KEG-ILL-AVSTNDNGIKILANADGIRLLRTV  681 (1134)
Q Consensus       615 ~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~v~~v~~s--p~~-~~l-~~~~~dg~i~iw~~~~~~~~~~~~  681 (1134)
                      .+-++.-|.-|+.+..     +.+...........|-.+++-  .++ .+| ++.-.+++..+|+..........+
T Consensus       224 vgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f  299 (381)
T PF02333_consen  224 VGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSF  299 (381)
T ss_dssp             EEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred             EecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence            9999988888887622     222222222233456666664  333 344 444457789999987643433333

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=91.33  E-value=24  Score=39.02  Aligned_cols=195  Identities=9%  Similarity=0.058  Sum_probs=103.7

Q ss_pred             CCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEe----eCCCE--EEEEe-CC---CcEEEEECCCCccccce
Q 001163          896 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFS----NTLNV--LVSSG-AD---SQLCVWSTDGWEKQASK  965 (1134)
Q Consensus       896 ~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s----~d~~~--l~s~s-~D---g~i~iwd~~~~~~~~~~  965 (1134)
                      ...+++....++-+.+||+. |+.+..+.  .++++.+..-    -.|+.  |+.++ .+   .+|++|.++....   .
T Consensus        67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g---~  140 (381)
T PF02333_consen   67 AKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG---E  140 (381)
T ss_dssp             GG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT---E
T ss_pred             ccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC---c
Confidence            44577777778889999987 55566554  2344444332    23433  33443 32   4699998864211   1


Q ss_pred             eeeecCCCC---CCCCCceEEEE--cC-CCCEEEE--EeeceEEEEeCC---Cc----ccceeeccCCCccCEEEEEEcc
Q 001163          966 FLTIPNGRT---ASALADTRVQF--HL-DQTHLLA--VHETQIAIYEAP---KL----ECLKQFVPREASGPITHATYSC 1030 (1134)
Q Consensus       966 ~~~~~~~~~---~~~~~v~~l~f--s~-dg~~l~~--~~d~~i~iwd~~---~~----~~~~~~~~~~h~~~v~~~~~s~ 1030 (1134)
                      +..+.....   .....+..+|+  ++ +|.+.+.  ..+|.+.-|.+.   .+    +.+++|..   .+.+..+....
T Consensus       141 L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~---~sQ~EGCVVDD  217 (381)
T PF02333_consen  141 LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV---GSQPEGCVVDD  217 (381)
T ss_dssp             EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----SS-EEEEEEET
T ss_pred             ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC---CCcceEEEEec
Confidence            111111000   11133566776  33 5665544  466888777764   23    34556653   45788888888


Q ss_pred             CCCEEEEEecCCcEEEeecCCCc-----ceeecCCCcccCCCCCCCceeEEEEecCCC-CCEEEEEecCCcEEEEeCCCC
Q 001163         1031 DSQSIYVAFEEGSVGVLTASTLR-----LRCRINPTAYLPTNPSLRVYPLVIAGNPTD-PNQFALGLTDGGVYIIEPLEA 1104 (1134)
Q Consensus      1031 dg~~l~s~s~Dg~i~vwd~~~~~-----~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~-~~~l~s~~~Dg~v~vW~~~~~ 1104 (1134)
                      ...+|+.+-+|.-|.-|+.+...     .+.... .    .+....|-.+++-..++. +.+|+|.=.+++..+|+-...
T Consensus       218 e~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~-g----~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  218 ETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASAD-G----DGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             TTTEEEEEETTTEEEEEESSCCC-S--EEEEEBS-S----SSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred             ccCCEEEecCccEEEEEecCCCCCCcceeeeccc-c----cccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            88899999998767777765322     111111 1    123455777777655532 334555555778999998643

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.28  E-value=1.9  Score=52.40  Aligned_cols=146  Identities=12%  Similarity=0.023  Sum_probs=87.4

Q ss_pred             CEEEEEEecCCCceEEEEEeCCCeEEEEECCCCcee-----EEecC------CCcCEEEEeccccCCccEEEEecCCCcE
Q 001163          465 SVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ-----YIFEG------HESPVYSICPHHKENIQFIFSTATDGKI  533 (1134)
Q Consensus       465 ~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~-----~~~~~------h~~~v~~~~~~~~~~~~~l~s~s~dg~i  533 (1134)
                      +|..+...+|+....++..+.+-.|..+|+++-..-     .-|..      ......++.|.+... ...+....|+.|
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dlsl  180 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLSL  180 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccch
Confidence            455666667777545556666668899998754221     11111      122344566766554 345667778888


Q ss_pred             EEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecC---CCCCceEEEEEcCCC
Q 001163          534 KAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG---LGKRSVGVVQFDTTK  610 (1134)
Q Consensus       534 ~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~---~~~~~v~~~~~~~~~  610 (1134)
                      ++..+........-..-....++++|+|.|+.++.+-.    .+++.-|... .+....+.+   .....|.+++|-...
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~n----nGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~  255 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRN----NGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQ  255 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecC----CCeEEEeecc-cceeecccCCCcCCCcceeEEEEecce
Confidence            88866543332222223447889999999999999854    3346666543 333333333   233468889998777


Q ss_pred             CEEEEE
Q 001163          611 NRFLAA  616 (1134)
Q Consensus       611 ~~l~~~  616 (1134)
                      .++++-
T Consensus       256 eflvvy  261 (1405)
T KOG3630|consen  256 EFLVVY  261 (1405)
T ss_pred             eEEEEe
Confidence            666653

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=91.23  E-value=5.2  Score=45.04  Aligned_cols=150  Identities=10%  Similarity=0.040  Sum_probs=80.3

Q ss_pred             CCeEEEEEcCCCCcEEEEEe-----------CCC-cEEEEEccc--ce--EEEeccCccCceEEEEEeeCCCEEEEEeCC
Q 001163          885 PAATFLAFHPQDNNIIAIGM-----------EDS-SIQIYNVRV--DE--VKTKLKGHQKRITGLAFSNTLNVLVSSGAD  948 (1134)
Q Consensus       885 ~~v~~l~~sp~~~~~la~g~-----------~dg-~i~iwd~~~--~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D  948 (1134)
                      .....|+|.+ +|+++++-.           ..+ .|.+++-.+  |+  ....+-..-.....+++.++| ++++ ...
T Consensus        14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~   90 (367)
T TIGR02604        14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPP   90 (367)
T ss_pred             CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCC
Confidence            4567889988 777766642           223 677776543  32  223333333456789999998 4444 444


Q ss_pred             CcEEEE-ECCCCc-cc--cceeeeecCCC-CCCCCCceEEEEcCCCCEEEE-Eee-------------------ceEEEE
Q 001163          949 SQLCVW-STDGWE-KQ--ASKFLTIPNGR-TASALADTRVQFHLDQTHLLA-VHE-------------------TQIAIY 1003 (1134)
Q Consensus       949 g~i~iw-d~~~~~-~~--~~~~~~~~~~~-~~~~~~v~~l~fs~dg~~l~~-~~d-------------------~~i~iw 1003 (1134)
                      . |..| +.+... ..  ...++...... .........++|.|||.+.++ +..                   +.|.-+
T Consensus        91 ~-i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~  169 (367)
T TIGR02604        91 D-ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY  169 (367)
T ss_pred             e-EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence            4 4434 443321 11  11222222111 001134678999999987765 411                   334555


Q ss_pred             eCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecC
Q 001163         1004 EAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEE 1041 (1134)
Q Consensus      1004 d~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D 1041 (1134)
                      +..+++. ..+ ..+ -.....++|+++|+++++-..+
T Consensus       170 ~pdg~~~-e~~-a~G-~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       170 NPDGGKL-RVV-AHG-FQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             ecCCCeE-EEE-ecC-cCCCccceECCCCCEEEEccCC
Confidence            5544332 222 223 3455789999999987765433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=91.21  E-value=0.71  Score=32.34  Aligned_cols=32  Identities=25%  Similarity=0.377  Sum_probs=27.2

Q ss_pred             CCEEEEEEcCC-C--CEEEEEeCCCEEEEEEccCC
Q 001163          419 ASVNRVMWSPD-G--TLFGVAYSKHIVHLYTYHGG  450 (1134)
Q Consensus       419 ~~V~~l~~spd-~--~~las~s~dg~v~iwd~~~~  450 (1134)
                      +.|.++.|||+ +  ++||.+-..|.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            47899999984 4  59999989999999999863

It contains a characteristic DLL sequence motif.

>PHA02790 Kelch-like protein; Provisional

Probab=91.19  E-value=9  Score=44.92  Aligned_cols=186  Identities=8%  Similarity=-0.084  Sum_probs=83.7

Q ss_pred             CCCEEEEEeCCC-----EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC--CeEEEEECCCCceeE
Q 001163          429 DGTLFGVAYSKH-----IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED--RVIKVWDAVTGTKQY  501 (1134)
Q Consensus       429 d~~~las~s~dg-----~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d--~~i~iwd~~~~~~~~  501 (1134)
                      ++.++++||.++     .+..||..+++-.. ...+.........+  .-++.  +.+.||.+  .++..||..+++-..
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~-~~~m~~~r~~~~~v--~~~~~--iYviGG~~~~~sve~ydp~~n~W~~  345 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIP-IPPMNSPRLYASGV--PANNK--LYVVGGLPNPTSVERWFHGDAAWVN  345 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEE-CCCCCchhhcceEE--EECCE--EEEECCcCCCCceEEEECCCCeEEE
Confidence            455566666542     46678877764322 11222111112222  23555  56666653  467888876654322


Q ss_pred             --EecCCCcCEEEEeccccCCccEEEEecCCC---cEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCC
Q 001163          502 --IFEGHESPVYSICPHHKENIQFIFSTATDG---KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGE  576 (1134)
Q Consensus       502 --~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~  576 (1134)
                        .+.........+.    -+|.+.+.|+.++   .+..||..+..-...-..........+..-+++..+.|+      
T Consensus       346 ~~~l~~~r~~~~~~~----~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG------  415 (480)
T PHA02790        346 MPSLLKPRCNPAVAS----INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR------  415 (480)
T ss_pred             CCCCCCCCcccEEEE----ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC------
Confidence              2221111111111    2336667777553   466787664332221111111111122233555555553      


Q ss_pred             eEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCc
Q 001163          577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNVN  631 (1134)
Q Consensus       577 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~  631 (1134)
                       .+.+||..+.+....-.......-..++ .-+++..+.||.+     ..+.+||..+++
T Consensus       416 -~~e~ydp~~~~W~~~~~m~~~r~~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        416 -NAEFYCESSNTWTLIDDPIYPRDNPELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             -ceEEecCCCCcEeEcCCCCCCccccEEE-EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence             2567888776554322211110111222 2355666777643     235555555443

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=91.17  E-value=16  Score=41.60  Aligned_cols=279  Identities=16%  Similarity=0.100  Sum_probs=139.8

Q ss_pred             EEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCC
Q 001163          351 MTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG  430 (1134)
Q Consensus       351 ~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~  430 (1134)
                      +.+.....|.++.|.-.|.+  -+|+.|| +..+|..+++.++...                  .....+|..+.-+-.|
T Consensus       159 r~ll~d~~V~aLv~D~~g~l--WvgT~dG-L~~fd~~~gkalql~s------------------~~~dk~I~al~~d~qg  217 (671)
T COG3292         159 RPLLKDTPVVALVFDANGRL--WVGTPDG-LSYFDAGRGKALQLAS------------------PPLDKAINALIADVQG  217 (671)
T ss_pred             cccccCccceeeeeeccCcE--EEecCCc-ceEEccccceEEEcCC------------------CcchhhHHHHHHHhcC
Confidence            44456788999999999984  4667776 6778888877665311                  1112455555555555


Q ss_pred             CEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEe-cCC--C
Q 001163          431 TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF-EGH--E  507 (1134)
Q Consensus       431 ~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h--~  507 (1134)
                      + |-+|+.+| |.+.+.++.+.....  ..-..+.|..+.=..+|.   +-.|+..|-.+. ....+...... +.|  .
T Consensus       218 ~-LWVGTdqG-v~~~e~~G~~~sn~~--~~lp~~~I~ll~qD~qG~---lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~  289 (671)
T COG3292         218 R-LWVGTDQG-VYLQEAEGWRASNWG--PMLPSGNILLLVQDAQGE---LWIGTENGLWRT-RLPRQGLQIPLSKMHLGV  289 (671)
T ss_pred             c-EEEEeccc-eEEEchhhccccccC--CCCcchheeeeecccCCC---EEEeecccceeE-ecCCCCccccccccCCcc
Confidence            4 55677777 777776653211100  011233455444444443   555555554332 22333222222 222  2


Q ss_pred             cCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECc--CCCEEEEEecCCCCCeEEEEEeCC
Q 001163          508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSA--DGARLFSCGTNKEGESYLVEWNES  585 (1134)
Q Consensus       508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~wd~~  585 (1134)
                      +.|.++.  .+.+| -+.+++.++.+++=+-+-..........+..+...+.+|  .+..+-..    ...+.+.+-+..
T Consensus       290 S~vnsL~--~D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~----ns~g~L~van~s  362 (671)
T COG3292         290 STVNSLW--LDTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQL----NSIGELMVANGS  362 (671)
T ss_pred             cccccee--eccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeec----cccceEEEecCC
Confidence            2344443  34443 466677777665433221111111111122222222222  11111111    012235555666


Q ss_pred             CCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC-CceeEEEecCCCCCCcceEEEcCCCcEEEEEECCC
Q 001163          586 EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN-VNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN  664 (1134)
Q Consensus       586 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg  664 (1134)
                      +|..+..........|+.+++..+ ..+-.++...-+..|+..+ +........ -..+.|..+.-.|+++ |-.|+.+|
T Consensus       363 tG~~v~sv~q~Rg~nit~~~~d~~-g~lWlgs~q~GLsrl~n~n~~avlde~ag-l~ss~V~aived~dns-LWIGTs~G  439 (671)
T COG3292         363 TGELVRSVHQLRGMNITTTLEDSR-GRLWLGSMQNGLSRLDNKNEWAVLDEDAG-LPSSEVSAIVEDPDNS-LWIGTSGG  439 (671)
T ss_pred             CCcEEEEeeeccccccchhhhccC-CcEEEEecccchhhhccCCcccccccccC-CcccceeeeeecCCCC-EEEeccCC
Confidence            777766655555556777777774 4556666554456666655 333333222 2245677777778877 66688777


Q ss_pred             cEEE
Q 001163          665 GIKI  668 (1134)
Q Consensus       665 ~i~i  668 (1134)
                      .++.
T Consensus       440 lvk~  443 (671)
T COG3292         440 LVKR  443 (671)
T ss_pred             eEec
Confidence            6654

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.01  E-value=2.5  Score=46.07  Aligned_cols=125  Identities=14%  Similarity=0.156  Sum_probs=82.0

Q ss_pred             ecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001163          354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF  433 (1134)
Q Consensus       354 ~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l  433 (1134)
                      ...++|.++.||+|.+ ++|+--.|.+|.+.+....+.......               ..+..+..|....|+.+ .-+
T Consensus        64 ~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~---------------~ck~k~~~IlGF~W~~s-~e~  126 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQ---------------ECKTKNANILGFCWTSS-TEI  126 (657)
T ss_pred             cCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHH---------------HhccCcceeEEEEEecC-eeE
Confidence            3677999999999999 779999999999999854433221110               02234456899999876 667


Q ss_pred             EEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCc
Q 001163          434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT  498 (1134)
Q Consensus       434 as~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~  498 (1134)
                      |..+..| +-+|-+...+  +.....+.|...|.--.|+++..-.+|+|+-..+++.=+-++++.
T Consensus       127 A~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~  188 (657)
T KOG2377|consen  127 AFITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT  188 (657)
T ss_pred             EEEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence            7776666 6777665432  122235678889999999999885334444344444444444443

>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others

Probab=90.98  E-value=14  Score=47.82  Aligned_cols=135  Identities=10%  Similarity=0.076  Sum_probs=78.3

Q ss_pred             EEeCCCcEEEEEcccce-------EEEec---------cCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccce
Q 001163          902 IGMEDSSIQIYNVRVDE-------VKTKL---------KGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASK  965 (1134)
Q Consensus       902 ~g~~dg~i~iwd~~~~~-------~~~~l---------~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~  965 (1134)
                      +|-.||.|+-||-.+..       -+..|         .-..+.|..+.+++...-++-+. +..+.+=- ...+.....
T Consensus       618 v~L~~G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~-~~~~a~~~-~r~~~e~G~  695 (1774)
T PF11725_consen  618 VGLQDGKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGD-NNVFALPQ-RRNKVELGD  695 (1774)
T ss_pred             eeeccceEeeecCcchhhhhccCcCHHHHhccccCCceEecCCceeeeecccCCCccccCC-Cccccccc-ccCCCCCCc
Confidence            34457999999865421       11111         12356677777777665555432 22111100 000111111


Q ss_pred             eeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEE
Q 001163          966 FLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVG 1045 (1134)
Q Consensus       966 ~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~ 1045 (1134)
                      .+.-.+     ...|+.+++-.+.++++....|.+..+. ..+..+ .+...+-++.|..+++.....+ ++...+|.++
T Consensus       696 ~l~Gl~-----~~~i~a~Avv~~~~fvald~qg~lt~h~-k~g~p~-~l~~~gl~G~ik~l~lD~~~nL-~Alt~~G~Lf  767 (1774)
T PF11725_consen  696 ALEGLE-----DRVITAFAVVNDNKFVALDDQGDLTAHQ-KPGRPV-PLSRPGLSGEIKDLALDEKQNL-YALTSTGELF  767 (1774)
T ss_pred             cccCCC-----cCcceeEEEEcCCceEEeccCCcccccc-CCCCCc-cCCCCCCCcchhheeeccccce-eEecCCCcee
Confidence            222222     1468999999999999988999999998 666633 3333345789999999877554 4455677666


Q ss_pred             E
Q 001163         1046 V 1046 (1134)
Q Consensus      1046 v 1046 (1134)
                      -
T Consensus       768 ~  768 (1774)
T PF11725_consen  768 R  768 (1774)
T ss_pred             e
Confidence            4

It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=90.75  E-value=0.37  Score=56.56  Aligned_cols=200  Identities=11%  Similarity=0.147  Sum_probs=109.1

Q ss_pred             CCCCeeEEEEcCCC-CeEEEee-CCeEEEEEcc--CCeEEEE-----ecCCCCCeEEEEEcCC--CCcEEEEEeCCCcEE
Q 001163          842 PEDAVPCFALSKND-SYVMSAS-GGKISLFNMM--TFKTMTT-----FMPPPPAATFLAFHPQ--DNNIIAIGMEDSSIQ  910 (1134)
Q Consensus       842 h~~~v~~v~~s~dg-~~la~~s-dg~i~lwd~~--~~~~~~~-----~~~~~~~v~~l~~sp~--~~~~la~g~~dg~i~  910 (1134)
                      ..+.+..+.|-... ..++  . -|.+.|||++  .|+....     .......+.-+.|.|.  +.-++..+..+++|+
T Consensus       131 f~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~  208 (1283)
T KOG1916|consen  131 FPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIR  208 (1283)
T ss_pred             CCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCcee
Confidence            45556666664211 1111  2 2677888874  2332222     1222233344444431  456777788889999


Q ss_pred             EEEcccceEEEeccCccCceEEEE-----------EeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCC
Q 001163          911 IYNVRVDEVKTKLKGHQKRITGLA-----------FSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALA  979 (1134)
Q Consensus       911 iwd~~~~~~~~~l~~h~~~V~~l~-----------~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  979 (1134)
                      +.+..+... ..+++|...++.++           .||||+.+|.++.||.+++|.+.-......+++..-..|..  ..
T Consensus       209 lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p  285 (1283)
T KOG1916|consen  209 LLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HP  285 (1283)
T ss_pred             EeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CC
Confidence            887765432 44566877666544           48999999999999999999876433222233333233321  22


Q ss_pred             ceEEEEcCC-------CCE--EEEE--eeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCE------------EE
Q 001163          980 DTRVQFHLD-------QTH--LLAV--HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQS------------IY 1036 (1134)
Q Consensus       980 v~~l~fs~d-------g~~--l~~~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~------------l~ 1036 (1134)
                      -.|.-|...       +.+  ++++  .++.+++|.-...+|.-.+.    -..|..+. -+||..            ++
T Consensus       286 ~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~----~d~v~iV~-p~~~~v~~~~~~~~~~~~~v  360 (1283)
T KOG1916|consen  286 RVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKL----IDGVQIVG-PHDGEVTDLSMCQWMTTRLV  360 (1283)
T ss_pred             ceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhc----ccceEeec-CCCccccchhhhHHHHHHHH
Confidence            233334433       222  2334  34679999988877773333    23344444 333332            33


Q ss_pred             EEecCCcEEEeecCC
Q 001163         1037 VAFEEGSVGVLTAST 1051 (1134)
Q Consensus      1037 s~s~Dg~i~vwd~~~ 1051 (1134)
                      +-+-|++|.+|.-..
T Consensus       361 ~r~v~~~i~~~qn~~  375 (1283)
T KOG1916|consen  361 SRSVDGTIKIWQNRK  375 (1283)
T ss_pred             HhhhHHHHHHhhcch
Confidence            455678888887443

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=90.74  E-value=6.3  Score=44.37  Aligned_cols=103  Identities=10%  Similarity=0.083  Sum_probs=55.6

Q ss_pred             ceEEEEEeeCCCEEEEEe-----------CCC-cEEEEECCCC--ccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE
Q 001163          929 RITGLAFSNTLNVLVSSG-----------ADS-QLCVWSTDGW--EKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA  994 (1134)
Q Consensus       929 ~V~~l~~s~d~~~l~s~s-----------~Dg-~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~  994 (1134)
                      ....|+|.++|+++++-.           ..+ .|.+++-..+  +......+  ..+.    .....+++.++| +++ 
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vf--a~~l----~~p~Gi~~~~~G-lyV-   86 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVF--AEEL----SMVTGLAVAVGG-VYV-   86 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEe--ecCC----CCccceeEecCC-EEE-
Confidence            356788999998877653           223 6777765432  22221121  1211    235779999999 444 


Q ss_pred             EeeceEEEE-eCCCc-----c--cc-eeeccC--CCccCEEEEEEccCCCEEEEEe
Q 001163          995 VHETQIAIY-EAPKL-----E--CL-KQFVPR--EASGPITHATYSCDSQSIYVAF 1039 (1134)
Q Consensus       995 ~~d~~i~iw-d~~~~-----~--~~-~~~~~~--~h~~~v~~~~~s~dg~~l~s~s 1039 (1134)
                      +....|..| |....     +  .+ ..+...  .+......++|.|||.+.++.+
T Consensus        87 ~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        87 ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            434445544 44321     1  11 112211  0234577899999998876555

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=90.47  E-value=28  Score=37.41  Aligned_cols=167  Identities=13%  Similarity=0.098  Sum_probs=89.5

Q ss_pred             eEEEEECCCCceeEEecC------CCcCEEEEeccccCC----ccEEEEecCCCcEEEEecCCCCceeeecCC-------
Q 001163          488 VIKVWDAVTGTKQYIFEG------HESPVYSICPHHKEN----IQFIFSTATDGKIKAWLYDNLGSRVDYDAP-------  550 (1134)
Q Consensus       488 ~i~iwd~~~~~~~~~~~~------h~~~v~~~~~~~~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-------  550 (1134)
                      .|.+||+.+++.++++.-      ..+.+..+.+...+.    +-..++=+..+.|.++|+.+++....+...       
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            677899999988876642      245577777765332    233444455568889998875543332211       


Q ss_pred             ------------CCCeeEEEECc---CCCEEEEEecCCCCCeEEEEEeCCC-----C---------eeEEEecCCCCCce
Q 001163          551 ------------GHSSTMMAYSA---DGARLFSCGTNKEGESYLVEWNESE-----G---------AVKRTYHGLGKRSV  601 (1134)
Q Consensus       551 ------------~~~v~~~~~s~---~~~~l~~~~~~~~~~~~i~~wd~~~-----~---------~~~~~~~~~~~~~v  601 (1134)
                                  ...+..++.+|   ++++|......+     -.+|.+.+     .         ..+..+ +......
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-----~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s  188 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-----RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQS  188 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT------SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SE
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-----CcEEEEEHHHhhCccccccccccccceec-cccCCCC
Confidence                        11245566654   666777665432     22332221     1         011111 2211245


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEcCCCc---eeEEEecCCC-CCCcceEEEcC--CCcEEEEE
Q 001163          602 GVVQFDTTKNRFLAAGDEFMIKFWDMDNVN---LLASIDADGG-LQASPCIRFNK--EGILLAVS  660 (1134)
Q Consensus       602 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~-~~~v~~v~~sp--~~~~l~~~  660 (1134)
                      ..++++++|..+++--..+.|..|+..+.-   ....+..... ...+..+.+.+  +|.+.+..
T Consensus       189 ~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  189 DGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             CEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             ceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            568889988888888899999999987621   2222222222 34556777777  55444433

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=90.30  E-value=25  Score=37.87  Aligned_cols=190  Identities=11%  Similarity=0.058  Sum_probs=101.4

Q ss_pred             eeEEEEcCCCCeEEE--ee-C----------CeEEEEEccCCeEEEEecCC------CCCeEEEEEcCCCC----cEEEE
Q 001163          846 VPCFALSKNDSYVMS--AS-G----------GKISLFNMMTFKTMTTFMPP------PPAATFLAFHPQDN----NIIAI  902 (1134)
Q Consensus       846 v~~v~~s~dg~~la~--~s-d----------g~i~lwd~~~~~~~~~~~~~------~~~v~~l~~sp~~~----~~la~  902 (1134)
                      |..+...+++++-+.  |. +          -+|.+||+.+.+.++++.-+      .+....+.+...++    .++..
T Consensus         3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI   82 (287)
T PF03022_consen    3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI   82 (287)
T ss_dssp             EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred             ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence            455666666665443  21 1          26889999999988886532      34467777765222    23433


Q ss_pred             E-eCCCcEEEEEcccceEEEeccCcc-------------------CceEEEEEee---CCCEEEEEeCCCcEEEEECCCC
Q 001163          903 G-MEDSSIQIYNVRVDEVKTKLKGHQ-------------------KRITGLAFSN---TLNVLVSSGADSQLCVWSTDGW  959 (1134)
Q Consensus       903 g-~~dg~i~iwd~~~~~~~~~l~~h~-------------------~~V~~l~~s~---d~~~l~s~s~Dg~i~iwd~~~~  959 (1134)
                      . ...+.|.|+|+.+++.-+.+..+.                   +.+..++.+|   +++.|.-..-.+ -++|.+.+.
T Consensus        83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~  161 (287)
T PF03022_consen   83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTS  161 (287)
T ss_dssp             EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHH
T ss_pred             eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHH
Confidence            3 334589999999887655443321                   2355566654   555666554433 234444331


Q ss_pred             ccccc-----e----eeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCcc---cceeeccCCC-ccCEEE
Q 001163          960 EKQAS-----K----FLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLE---CLKQFVPREA-SGPITH 1025 (1134)
Q Consensus       960 ~~~~~-----~----~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~~---~~~~~~~~~h-~~~v~~ 1025 (1134)
                      .....     .    .++.. |...  .....++++++|.+.++ ...+.|..|+..+.-   ....+..... -..+.+
T Consensus       162 ~L~~~~~~~~~~~~~~v~~l-G~k~--~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~  238 (287)
T PF03022_consen  162 VLRDPSLSDAQALASQVQDL-GDKG--SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDG  238 (287)
T ss_dssp             HHCSTT--HHH-HHHT-EEE-EE-----SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEE
T ss_pred             HhhCccccccccccccceec-cccC--CCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccce
Confidence            11110     0    01110 1100  23467889999988887 478899999988521   2222322222 346788


Q ss_pred             EEEcc--CCCEEEEEe
Q 001163         1026 ATYSC--DSQSIYVAF 1039 (1134)
Q Consensus      1026 ~~~s~--dg~~l~s~s 1039 (1134)
                      +.+.+  +|.+.+.++
T Consensus       239 ~~i~~~~~g~L~v~sn  254 (287)
T PF03022_consen  239 LKIDPEGDGYLWVLSN  254 (287)
T ss_dssp             EEE-T--TS-EEEEE-
T ss_pred             eeeccccCceEEEEEC
Confidence            88888  777666554

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=90.22  E-value=0.64  Score=54.69  Aligned_cols=164  Identities=15%  Similarity=0.180  Sum_probs=91.7

Q ss_pred             cCCCeeEEEEcC----CCCeEEEEEeCCCcEEEEecC--CccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC
Q 001163          355 QGSAVKSMDFHP----VQQILLVVGTNMGDVMLWEVG--SRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP  428 (1134)
Q Consensus       355 h~~~V~~v~fsp----~g~~lla~gs~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  428 (1134)
                      ..+.|-.++|-.    .+..      .-|...|||++  .|+......+++              ...-...+.-+.|.|
T Consensus       131 f~G~v~dl~fah~~~pk~~~------~vg~lfVy~vd~l~G~iq~~l~v~~--------------~~p~gs~~~~V~wcp  190 (1283)
T KOG1916|consen  131 FPGGVGDLQFAHTKCPKGRR------LVGELFVYDVDVLQGEIQPQLEVTP--------------ITPYGSDPQLVSWCP  190 (1283)
T ss_pred             CCCCcccccccccCChHHHH------HhhhhheeehHhhccccccceEEee--------------cCcCCCCcceeeecc
Confidence            345566666643    3331      22668899875  344333221111              112223334455554


Q ss_pred             ---CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEE-----------ecCCCceEEEEEeCCCeEEEEEC
Q 001163          429 ---DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAF-----------SYPNKQLSVVTCGEDRVIKVWDA  494 (1134)
Q Consensus       429 ---d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~-----------s~~~~~~~l~s~s~d~~i~iwd~  494 (1134)
                         +..++..+-.+++|++.++.+... .   .+.+|...+..++|           ||||+  .+++++.||.++.|.+
T Consensus       191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~-~---l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  191 IAVNKVYICYGLKGGEIRLLNINRALR-S---LFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFYQI  264 (1283)
T ss_pred             cccccceeeeccCCCceeEeeechHHH-H---HHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccceeee
Confidence               777888888889988877665432 1   35568877766654           78998  8899999998888765


Q ss_pred             C-----CCceeEEecCCCc-CEEEEeccccCC-------ccEEEEec-CCCcEEEEecCCCCce
Q 001163          495 V-----TGTKQYIFEGHES-PVYSICPHHKEN-------IQFIFSTA-TDGKIKAWLYDNLGSR  544 (1134)
Q Consensus       495 ~-----~~~~~~~~~~h~~-~v~~~~~~~~~~-------~~~l~s~s-~dg~i~vwd~~~~~~~  544 (1134)
                      .     ..+|++.++.|++ +-.|.-++....       -.++++++ .+..+++|.-...++.
T Consensus       265 yi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  265 YITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             eeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            3     3356666777763 322222221110       02344443 3455888865544443

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=90.11  E-value=38  Score=38.32  Aligned_cols=40  Identities=5%  Similarity=-0.048  Sum_probs=18.9

Q ss_pred             EEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECC
Q 001163          622 IKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND  663 (1134)
Q Consensus       622 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d  663 (1134)
                      +.+||..+.+....-....  ..-...+..-++.+++.|+..
T Consensus       314 ~e~yd~~~~~W~~~~~lp~--~r~~~~av~~~~~iyv~GG~~  353 (376)
T PRK14131        314 DEIYALVNGKWQKVGELPQ--GLAYGVSVSWNNGVLLIGGET  353 (376)
T ss_pred             hheEEecCCcccccCcCCC--CccceEEEEeCCEEEEEcCCC
Confidence            4578887765432211111  111122333456677777653

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=90.01  E-value=10  Score=44.35  Aligned_cols=121  Identities=17%  Similarity=0.110  Sum_probs=66.2

Q ss_pred             EEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEe--------------ec
Q 001163          933 LAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVH--------------ET  998 (1134)
Q Consensus       933 l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~--------------d~  998 (1134)
                      +...++|.+++..+  ..+..+|+.... ..  ......+..   ..-..+..-|+|++|+.+.              +.
T Consensus       153 ~~~l~nG~ll~~~~--~~~~e~D~~G~v-~~--~~~l~~~~~---~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D  224 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG--NRLYEIDLLGKV-IW--EYDLPGGYY---DFHHDIDELPNGNLLILASETKYVDEDKDVDTVED  224 (477)
T ss_dssp             EEE-TTS-EEEEEB--TEEEEE-TT--E-EE--EEE--TTEE----B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-
T ss_pred             eeEcCCCCEEEecC--CceEEEcCCCCE-EE--eeecCCccc---ccccccEECCCCCEEEEEeecccccCCCCccEecC
Confidence            56678898887665  678888876532 11  122222110   0123477889999988754              22


Q ss_pred             eEEEEeCCCcccceeeccCCCc-------------------------cCEEEEEEcc-CCCEEEEEecCCcEEEeecCCC
Q 001163          999 QIAIYEAPKLECLKQFVPREAS-------------------------GPITHATYSC-DSQSIYVAFEEGSVGVLTASTL 1052 (1134)
Q Consensus       999 ~i~iwd~~~~~~~~~~~~~~h~-------------------------~~v~~~~~s~-dg~~l~s~s~Dg~i~vwd~~~~ 1052 (1134)
                      .|..+| .+|+.+..|....|-                         ..+.++.+.+ |+.+|+|+-.-..|...|..++
T Consensus       225 ~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~  303 (477)
T PF05935_consen  225 VIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTG  303 (477)
T ss_dssp             EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS
T ss_pred             EEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCC
Confidence            466667 777776665533321                         3578899988 6666666666678999999999


Q ss_pred             cceeecCCCc
Q 001163         1053 RLRCRINPTA 1062 (1134)
Q Consensus      1053 ~~~~~~~~~~ 1062 (1134)
                      +....+....
T Consensus       304 ~i~Wilg~~~  313 (477)
T PF05935_consen  304 KIKWILGPPG  313 (477)
T ss_dssp             -EEEEES-ST
T ss_pred             cEEEEeCCCC
Confidence            9988887543

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=89.93  E-value=0.96  Score=31.70  Aligned_cols=33  Identities=27%  Similarity=0.355  Sum_probs=26.6

Q ss_pred             CCeeEEEEcCCCC--eEEEEEeCCCcEEEEecCCc
Q 001163          357 SAVKSMDFHPVQQ--ILLVVGTNMGDVMLWEVGSR  389 (1134)
Q Consensus       357 ~~V~~v~fsp~g~--~lla~gs~dg~v~iwd~~~~  389 (1134)
                      +.|.+++|||...  .||+..-.-|.|.|+|+.++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            4688999997544  57888888899999999853

It contains a characteristic DLL sequence motif.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=89.61  E-value=16  Score=43.75  Aligned_cols=118  Identities=8%  Similarity=0.034  Sum_probs=76.9

Q ss_pred             CCEEEEEEcC--CCCEEEEEeCCCEEEEEEccC-------C----------ceeeeeeeeecCCCCEEEEEEe--cCCCc
Q 001163          419 ASVNRVMWSP--DGTLFGVAYSKHIVHLYTYHG-------G----------DELRNHLEIEAHVGSVNDLAFS--YPNKQ  477 (1134)
Q Consensus       419 ~~V~~l~~sp--d~~~las~s~dg~v~iwd~~~-------~----------~~~~~~~~l~~h~~~V~~v~~s--~~~~~  477 (1134)
                      ..|+.|....  +...|+.+.+||.|.+|.+++       .          ..+++...+. -....+.++++  ...+ 
T Consensus       101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r-  178 (717)
T PF08728_consen  101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR-  178 (717)
T ss_pred             ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce-
Confidence            3677776665  667899999999999997632       0          0011222222 34478999998  5555 


Q ss_pred             eEEEEEeCCCeEEEEECCC--CceeE-EecCCCcCEEEEeccccCC---cc-EEEEecCCCcEEEEecC
Q 001163          478 LSVVTCGEDRVIKVWDAVT--GTKQY-IFEGHESPVYSICPHHKEN---IQ-FIFSTATDGKIKAWLYD  539 (1134)
Q Consensus       478 ~~l~s~s~d~~i~iwd~~~--~~~~~-~~~~h~~~v~~~~~~~~~~---~~-~l~s~s~dg~i~vwd~~  539 (1134)
                       +||.++....|.||-...  .+... .-..|...|.+|+|.....   |. .+++++-.|.+.+|++.
T Consensus       179 -lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  179 -LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             -EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence             778888777777765433  22111 1112667788898876552   22 78889999999998873

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=89.55  E-value=37  Score=37.42  Aligned_cols=163  Identities=11%  Similarity=0.129  Sum_probs=90.3

Q ss_pred             CCCeEEEEEcCCCCcEEEEEeCCCc------EEEEEccc--c--eEE-----EeccCccC--------ceEEEEEeeCCC
Q 001163          884 PPAATFLAFHPQDNNIIAIGMEDSS------IQIYNVRV--D--EVK-----TKLKGHQK--------RITGLAFSNTLN  940 (1134)
Q Consensus       884 ~~~v~~l~~sp~~~~~la~g~~dg~------i~iwd~~~--~--~~~-----~~l~~h~~--------~V~~l~~s~d~~  940 (1134)
                      -+....+.+.++++. +++.+++|.      +..+++..  +  ..+     ..+..-.+        ..-+|++.++|.
T Consensus        19 ~GGlSgl~~~~~~~~-~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~   97 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGR-FYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS   97 (326)
T ss_pred             cCcEeeEEEeCCCCE-EEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence            466788899863454 444556666      55555443  1  011     11221111        233688888888


Q ss_pred             EEEEEeCC------CcEEEEECCCCccccceeeeecCC---------CCCCCCCceEEEEcCCCCEEEEE------eec-
Q 001163          941 VLVSSGAD------SQLCVWSTDGWEKQASKFLTIPNG---------RTASALADTRVQFHLDQTHLLAV------HET-  998 (1134)
Q Consensus       941 ~l~s~s~D------g~i~iwd~~~~~~~~~~~~~~~~~---------~~~~~~~v~~l~fs~dg~~l~~~------~d~-  998 (1134)
                      ++++.=.+      ..|+.++.. |+....  +.++..         ......+...++++|||+.|++.      .|+ 
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~--~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~  174 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRR--FPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP  174 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCC-Ccccce--EccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc
Confidence            88877666      667777766 443221  111211         11122578999999999955542      232 


Q ss_pred             -e-------EEE--EeCCC-cccceeecc--CC-----CccCEEEEEEccCCCEEEEEe-----cCCcEEEeecC
Q 001163          999 -Q-------IAI--YEAPK-LECLKQFVP--RE-----ASGPITHATYSCDSQSIYVAF-----EEGSVGVLTAS 1050 (1134)
Q Consensus       999 -~-------i~i--wd~~~-~~~~~~~~~--~~-----h~~~v~~~~~s~dg~~l~s~s-----~Dg~i~vwd~~ 1050 (1134)
                       .       +++  ||..+ ++....+..  ..     ....|+.+.+-+|+++|+.==     ....++|+.+.
T Consensus       175 ~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~  249 (326)
T PF13449_consen  175 RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD  249 (326)
T ss_pred             ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence             1       444  55554 333444331  11     357889999999999876422     23456666554

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=89.38  E-value=42  Score=37.84  Aligned_cols=197  Identities=16%  Similarity=0.067  Sum_probs=104.7

Q ss_pred             EEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCc-CE
Q 001163          432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES-PV  510 (1134)
Q Consensus       432 ~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~-~v  510 (1134)
                      .+..+..+|.|.-.|..++..+...... +....+..-.+..+|+   ++.++.++.+...|..+|+.+........ .+
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~-~~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~  145 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLL-GAVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY  145 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCc-CcceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence            3444467777777777777644322111 1112233333333776   78888899999999889999887765551 11


Q ss_pred             EEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCC---CCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC
Q 001163          511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG---HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG  587 (1134)
Q Consensus       511 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~  587 (1134)
                      ..-.+  ..+ ..++.++.++.+...|..++..+.......   ..+..-....++. ++.+..+ . +..+.-.|..+|
T Consensus       146 ~~~~v--~~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-vy~~~~~-~-~~~~~a~~~~~G  219 (370)
T COG1520         146 ASPPV--VGD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT-VYVGSDG-Y-DGILYALNAEDG  219 (370)
T ss_pred             ecCcE--EcC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce-EEEecCC-C-cceEEEEEccCC
Confidence            11111  112 344445467777777777666655543322   1111111122333 3333221 1 335777888888


Q ss_pred             eeEEEecCCCCCceE----EEEEcC----CCCEEEEEeCCCeEEEEEcCCCceeEEEec
Q 001163          588 AVKRTYHGLGKRSVG----VVQFDT----TKNRFLAAGDEFMIKFWDMDNVNLLASIDA  638 (1134)
Q Consensus       588 ~~~~~~~~~~~~~v~----~~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  638 (1134)
                      ...............    ...+..    .+..++.++.++.+...|..+++.+-....
T Consensus       220 ~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~  278 (370)
T COG1520         220 TLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA  278 (370)
T ss_pred             cEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence            777664322110100    000100    112345667778899999999998888765

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.27  E-value=4.7  Score=51.13  Aligned_cols=69  Identities=14%  Similarity=0.180  Sum_probs=47.5

Q ss_pred             CceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcc
Q 001163          979 ADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRL 1054 (1134)
Q Consensus       979 ~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~ 1054 (1134)
                      .+.+..+..+...+.....+.+.+|+.........+...++..       +.++..++++-.||.+.+||...+..
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  200 ESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQLE-------SRDGSHFVSYHTDGSYAFWDVSSGKL  268 (993)
T ss_pred             ccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccccC-------ccCCceEEEEEecCCEEeeecCCCce
Confidence            3455555555555555566677777766555444444333222       88999999999999999999999865

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=88.76  E-value=47  Score=37.50  Aligned_cols=202  Identities=11%  Similarity=-0.013  Sum_probs=107.3

Q ss_pred             EcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCC--CCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCcc-
Q 001163          851 LSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPP--PAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQ-  927 (1134)
Q Consensus       851 ~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~--~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~-  927 (1134)
                      ...||+.++...+|.|.-.|..+++.+.......  ..+..-.+.. +|+ ++.++.+|.++.+|..+|+.+....... 
T Consensus        65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~  142 (370)
T COG1520          65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS  142 (370)
T ss_pred             EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence            4456666666568888888888888765543221  2333333443 554 7788889989999988898887766555 


Q ss_pred             CceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEe--eceEEEEeC
Q 001163          928 KRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVH--ETQIAIYEA 1005 (1134)
Q Consensus       928 ~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~--d~~i~iwd~ 1005 (1134)
                      -.+..-.+-.++ .+..++.|+.+.-.|..+++..=  ......+ ..  ..+..-....++..++...  ++.+.-.|.
T Consensus       143 ~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W--~~~~~~~-~~--~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~  216 (370)
T COG1520         143 PYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKW--TYETPAP-LS--LSIYGSPAIASGTVYVGSDGYDGILYALNA  216 (370)
T ss_pred             eEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEE--EEecCCc-cc--cccccCceeecceEEEecCCCcceEEEEEc
Confidence            122222222333 23333356777777766655211  0011110 00  0011111133444333333  456777777


Q ss_pred             CCcccceeecc---CCCccC-----EEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCC
Q 001163         1006 PKLECLKQFVP---REASGP-----ITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPT 1061 (1134)
Q Consensus      1006 ~~~~~~~~~~~---~~h~~~-----v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~ 1061 (1134)
                      .+|........   .+....     +..-..--++. +..++.++.+...|..+|+.+.+....
T Consensus       217 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-~~~~~~~g~~~~l~~~~G~~~W~~~~~  279 (370)
T COG1520         217 EDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGG-VYAGSYGGKLLCLDADTGELIWSFPAG  279 (370)
T ss_pred             cCCcEeeeeeeecccCcccccccccccCceEEECCc-EEEEecCCeEEEEEcCCCceEEEEecc
Confidence            77776655321   111111     11101111222 356677788999999999998887743

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.75  E-value=8.2  Score=43.09  Aligned_cols=46  Identities=13%  Similarity=0.015  Sum_probs=35.1

Q ss_pred             CCceeEEEEecCCC--CCEEEEEecCCcEEEEeCCCCCCCccCCCCCC
Q 001163         1070 LRVYPLVIAGNPTD--PNQFALGLTDGGVYIIEPLEAEGRWGTSPPNE 1115 (1134)
Q Consensus      1070 ~~v~~~~~~~~p~~--~~~l~s~~~Dg~v~vW~~~~~~~~~~~~~~~~ 1115 (1134)
                      .+++-..++|+|+.  ...|+.-+.|..+|+|+.++..--|...+|.-
T Consensus       164 ~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylqpgepg  211 (741)
T KOG4460|consen  164 TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQPGEPG  211 (741)
T ss_pred             CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhccCCCcC
Confidence            33444566899965  56888899999999999999888787754443

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=88.16  E-value=34  Score=39.19  Aligned_cols=108  Identities=19%  Similarity=0.233  Sum_probs=60.6

Q ss_pred             CCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccce--EEEecc-----CccCceEEEEEeeCC------CEEEEEe----
Q 001163          884 PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE--VKTKLK-----GHQKRITGLAFSNTL------NVLVSSG----  946 (1134)
Q Consensus       884 ~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~--~~~~l~-----~h~~~V~~l~~s~d~------~~l~s~s----  946 (1134)
                      -.....|+|.| |+++|++--..|.|++++..++.  .+..+.     .-.+....|+++|+-      .+|....    
T Consensus        29 L~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~  107 (454)
T TIGR03606        29 LNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN  107 (454)
T ss_pred             CCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence            34568899999 88877766557999999865543  222221     124668899999874      2333321    


Q ss_pred             ------CCCcEEEEECCCC--cccc-ceeee-ecCCCCCCCCCceEEEEcCCCCEEEEE
Q 001163          947 ------ADSQLCVWSTDGW--EKQA-SKFLT-IPNGRTASALADTRVQFHLDQTHLLAV  995 (1134)
Q Consensus       947 ------~Dg~i~iwd~~~~--~~~~-~~~~~-~~~~~~~~~~~v~~l~fs~dg~~l~~~  995 (1134)
                            ....|.-|.+...  .... ..++. .+....   ..-..++|.|||.+.++.
T Consensus       108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~---H~GgrI~FgPDG~LYVs~  163 (454)
T TIGR03606       108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGND---HNGGRLVFGPDGKIYYTI  163 (454)
T ss_pred             CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCC---cCCceEEECCCCcEEEEE
Confidence                  1233555555421  1111 11221 111111   124678899999877763

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=88.15  E-value=46  Score=36.69  Aligned_cols=69  Identities=7%  Similarity=-0.028  Sum_probs=35.1

Q ss_pred             cEEEEecCC-----CcEEEEecCCCCceeeecCCC-CCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeE
Q 001163          522 QFIFSTATD-----GKIKAWLYDNLGSRVDYDAPG-HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK  590 (1134)
Q Consensus       522 ~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~  590 (1134)
                      .+.+.|+..     ..+..||+.+.+-...-.... ......+..-+++..+.++.+......+.+||+.+.+..
T Consensus       125 ~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~  199 (323)
T TIGR03548       125 TLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ  199 (323)
T ss_pred             EEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence            566666642     357777776543222211111 122223334466677777654322233678998876543

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=88.11  E-value=1.8  Score=29.88  Aligned_cols=32  Identities=13%  Similarity=0.185  Sum_probs=23.5

Q ss_pred             eecCCCeeEEEEcCCCCeEEEEEeCC--CcEEEE
Q 001163          353 LNQGSAVKSMDFHPVQQILLVVGTNM--GDVMLW  384 (1134)
Q Consensus       353 ~~h~~~V~~v~fsp~g~~lla~gs~d--g~v~iw  384 (1134)
                      ......-....|||||++|+.++..+  |.-.||
T Consensus         5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            33556678999999999998888777  766665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=87.66  E-value=19  Score=40.22  Aligned_cols=151  Identities=11%  Similarity=0.100  Sum_probs=91.4

Q ss_pred             EEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccC------CccEEEEecCCCcEEEEecCC
Q 001163          467 NDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKE------NIQFIFSTATDGKIKAWLYDN  540 (1134)
Q Consensus       467 ~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~------~~~~l~s~s~dg~i~vwd~~~  540 (1134)
                      .-+-.+.++..+++..|+....++-.|++.|+.+-.+.-|...|  +.|.|..      +.+.|+ |-.+..|.-.|.+.
T Consensus       470 ~K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~  546 (776)
T COG5167         470 EKIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRA  546 (776)
T ss_pred             hhceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEE-eecccceEEecccc
Confidence            33444445555566677777888889999999999998887664  3443321      223444 44455555556654


Q ss_pred             CCceeeecCCCC-----CeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEE
Q 001163          541 LGSRVDYDAPGH-----SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLA  615 (1134)
Q Consensus       541 ~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  615 (1134)
                      .+..........     ...+..- ....++++++..++    |++||--.-+....+++..+ .|..+..+.+|+++++
T Consensus       547 ~gNKi~v~esKdY~tKn~Fss~~t-TesGyIa~as~kGD----irLyDRig~rAKtalP~lG~-aIk~idvta~Gk~ila  620 (776)
T COG5167         547 RGNKIKVVESKDYKTKNKFSSGMT-TESGYIAAASRKGD----IRLYDRIGKRAKTALPGLGD-AIKHIDVTANGKHILA  620 (776)
T ss_pred             cCCceeeeeehhcccccccccccc-ccCceEEEecCCCc----eeeehhhcchhhhcCccccc-ceeeeEeecCCcEEEE
Confidence            443322221111     2222222 23457888876554    99999654444445555554 7888889999999988


Q ss_pred             EeCCCeEEEEEc
Q 001163          616 AGDEFMIKFWDM  627 (1134)
Q Consensus       616 ~~~dg~i~iwd~  627 (1134)
                      .+. ..+.+-|+
T Consensus       621 TCk-~yllL~d~  631 (776)
T COG5167         621 TCK-NYLLLTDV  631 (776)
T ss_pred             eec-ceEEEEec
Confidence            875 35555554

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=87.33  E-value=31  Score=38.08  Aligned_cols=160  Identities=19%  Similarity=0.195  Sum_probs=88.1

Q ss_pred             ccccEEEEEEecCCceeeeeccCCe------EEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeE
Q 001163          775 TAMRVSRLIYTNSGLAILALASNAV------HKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPC  848 (1134)
Q Consensus       775 ~~~~i~~l~~spdg~~l~~~~~dg~------i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~  848 (1134)
                      .-+.+..+.+.+++..+++.+.+|.      +..+++..... ..+.......+.+-+.. |....    .  ..-...+
T Consensus        18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~-G~~~~----~--~~~D~Eg   89 (326)
T PF13449_consen   18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQG-GIGGVTILDMIPLRDPD-GQPFP----K--NGLDPEG   89 (326)
T ss_pred             ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCC-CccceEeccceeccCCC-CCcCC----c--CCCChhH
Confidence            3466789999976666777777776      55444443111 00111111111111111 11111    0  1224557


Q ss_pred             EEEcCCCCeEEEee-C------CeEEEEEccCCeEEEEec---------------CCCCCeEEEEEcCCCCcEEEEEeC-
Q 001163          849 FALSKNDSYVMSAS-G------GKISLFNMMTFKTMTTFM---------------PPPPAATFLAFHPQDNNIIAIGME-  905 (1134)
Q Consensus       849 v~~s~dg~~la~~s-d------g~i~lwd~~~~~~~~~~~---------------~~~~~v~~l~~sp~~~~~la~g~~-  905 (1134)
                      +++.++|.++++.. +      ..|+.++.. |+.+..+.               ..+...-+|+++| +|+.|.++.. 
T Consensus        90 i~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E~  167 (326)
T PF13449_consen   90 IAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAMES  167 (326)
T ss_pred             eEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEECc
Confidence            88888888888776 6      668888876 66554441               1234588999999 7875555432 


Q ss_pred             ----CC--c-------EEEEEcc--c-ce----EEEeccC-----ccCceEEEEEeeCCCEEEE
Q 001163          906 ----DS--S-------IQIYNVR--V-DE----VKTKLKG-----HQKRITGLAFSNTLNVLVS  944 (1134)
Q Consensus       906 ----dg--~-------i~iwd~~--~-~~----~~~~l~~-----h~~~V~~l~~s~d~~~l~s  944 (1134)
                          |+  .       ++|+...  + ++    ....+..     ....|..+.+-+++++|+-
T Consensus       168 ~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  168 PLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             cccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                22  1       5555443  3 22    2233332     3567888999999987764

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=87.09  E-value=33  Score=33.85  Aligned_cols=173  Identities=16%  Similarity=0.099  Sum_probs=90.4

Q ss_pred             EEEEEeCC--CeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeE
Q 001163          479 SVVTCGED--RVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTM  556 (1134)
Q Consensus       479 ~l~s~s~d--~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~  556 (1134)
                      ++.+.+.-  ..|++||+.+|+.+.+-.-....+..=-+...++ .+..-.-.+|.-..+|.++.+....+...+. -..
T Consensus        58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd-~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge-GWg  135 (262)
T COG3823          58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGD-YFYQLTWKEGVAFKYDADTLEELGRFSYEGE-GWG  135 (262)
T ss_pred             EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccc-eEEEEEeccceeEEEChHHhhhhcccccCCc-cee
Confidence            56666653  4799999999988765432211121111111122 2223334567777788777666555444332 222


Q ss_pred             EEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEE----ecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce
Q 001163          557 MAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRT----YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL  632 (1134)
Q Consensus       557 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  632 (1134)
                        ...|++.|+.+    +|..+++.-|.++.....+    +.+..-..++-+.|- +|...+-.=.+..|...+.++|+.
T Consensus       136 --Lt~d~~~Lims----dGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV  208 (262)
T COG3823         136 --LTSDDKNLIMS----DGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRV  208 (262)
T ss_pred             --eecCCcceEee----CCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcE
Confidence              34456556554    4456788888876544433    233221122333332 343333333444555567777776


Q ss_pred             eEEEecC----------CCCCCcceEEEcCCC-cEEEEE
Q 001163          633 LASIDAD----------GGLQASPCIRFNKEG-ILLAVS  660 (1134)
Q Consensus       633 ~~~~~~~----------~~~~~v~~v~~sp~~-~~l~~~  660 (1134)
                      +..+...          .+....+.+++.|++ +++++|
T Consensus       209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             EEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            6655432          123356789999977 455554

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=86.55  E-value=3.6  Score=48.92  Aligned_cols=134  Identities=13%  Similarity=0.128  Sum_probs=78.9

Q ss_pred             eeEEEEcC-CCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccc--cCccccccccccCCCCEEEEEEc--CCCCEE
Q 001163          359 VKSMDFHP-VQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGA--CSMPLQASLSSDYTASVNRVMWS--PDGTLF  433 (1134)
Q Consensus       359 V~~v~fsp-~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~V~~l~~s--pd~~~l  433 (1134)
                      |+.+.... -+..+|+.+..||.|.+|.+++--......-  -+...  ........+...-...++.++++  ...++|
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~--~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlI  180 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFS--EDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLI  180 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhc--cccccccccccCCCCeEeecCCceeEEEEEecCcceEE
Confidence            44444333 2345788899999999998743110000000  00000  00001111223345699999999  889999


Q ss_pred             EEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCC--c--eEEEEEeCCCeEEEEEC
Q 001163          434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK--Q--LSVVTCGEDRVIKVWDA  494 (1134)
Q Consensus       434 as~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~--~--~~l~s~s~d~~i~iwd~  494 (1134)
                      |++++...|.||-......-.....-..|...|-+|+|.++..  .  ..+++++-.|.+.+|++
T Consensus       181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            9999999898886654211111101113667799999987651  1  36888999999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=85.94  E-value=19  Score=32.88  Aligned_cols=115  Identities=10%  Similarity=0.080  Sum_probs=69.5

Q ss_pred             EEeeCCCEEEEEeCCCcEEEEECCCCccc------cceeeeecCCCCCCCCCceEEE---Ec--CCCCEEEEEeeceEEE
Q 001163          934 AFSNTLNVLVSSGADSQLCVWSTDGWEKQ------ASKFLTIPNGRTASALADTRVQ---FH--LDQTHLLAVHETQIAI 1002 (1134)
Q Consensus       934 ~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~~v~~l~---fs--~dg~~l~~~~d~~i~i 1002 (1134)
                      .|......|+.++.-++|.|.+.......      ....+.+..       .|++++   |.  .+...|++++...+..
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~-------~italaaG~l~~~~~~D~LliGt~t~lla   77 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQ-------EITALAAGRLKPDDGRDCLLIGTQTSLLA   77 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCC-------ceEEEEEEecCCCCCcCEEEEeccceEEE
Confidence            34444556777778888888876643211      112333322       356664   43  2456788899999999


Q ss_pred             EeCCCcccceeeccCCCccCEEEEEEc---cCCCEEEEEecCCcEEEeecCCCcceeec
Q 001163         1003 YEAPKLECLKQFVPREASGPITHATYS---CDSQSIYVAFEEGSVGVLTASTLRLRCRI 1058 (1134)
Q Consensus      1003 wd~~~~~~~~~~~~~~h~~~v~~~~~s---~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~ 1058 (1134)
                      ||+.+..-+....   -...|.++.+-   ....-|+..+.+..|.-||.+..+..+..
T Consensus        78 YDV~~N~d~Fyke---~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   78 YDVENNSDLFYKE---VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             EEcccCchhhhhh---CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence            9998665432222   14567776663   22233555555788999998777665443

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=85.49  E-value=42  Score=33.65  Aligned_cols=58  Identities=16%  Similarity=0.232  Sum_probs=41.6

Q ss_pred             eeEEEEcCCCCeEEEeeCCeEEEEEcc--CCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeC
Q 001163          846 VPCFALSKNDSYVMSASGGKISLFNMM--TFKTMTTFMPPPPAATFLAFHPQDNNIIAIGME  905 (1134)
Q Consensus       846 v~~v~~s~dg~~la~~sdg~i~lwd~~--~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~  905 (1134)
                      ...++-+..+.++++++..+|.+|++.  ..+.+.++.. -+.|..++++. .|.+|++--.
T Consensus        20 P~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~-~GDYlvTlE~   79 (215)
T PF14761_consen   20 PTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSE-AGDYLVTLEE   79 (215)
T ss_pred             cceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecc-ccceEEEEEe
Confidence            344555554455555668889999987  4556667764 38899999999 8999998643

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.15  E-value=22  Score=45.31  Aligned_cols=36  Identities=28%  Similarity=0.436  Sum_probs=29.2

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccc
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRER  391 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~  391 (1134)
                      -......++|+|..+ ++|.|+..|.|.++-...-+.
T Consensus        34 ~~~~~~~~afD~~q~-llai~t~tg~i~~yg~~~ve~   69 (993)
T KOG1983|consen   34 FPSTPSALAFDPTQG-LLAIGTRTGAIKIYGQPGVEF   69 (993)
T ss_pred             CCCCCcceeeccccc-eEEEEEecccEEEecccceEE
Confidence            345677899999988 789999999999998765443

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=84.97  E-value=80  Score=36.35  Aligned_cols=139  Identities=9%  Similarity=0.087  Sum_probs=73.8

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC
Q 001163          418 TASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG  497 (1134)
Q Consensus       418 ~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~  497 (1134)
                      ..+|..+.+...|. +-.|+.|| +..||..+++.+...  ......+|..+.-+-.|.   +..|+.+| |.+.+.+..
T Consensus       164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~--s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G~  235 (671)
T COG3292         164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLA--SPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEGW  235 (671)
T ss_pred             CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcC--CCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhhc
Confidence            45788888888775 55677787 788888887755421  122335677777777776   66666655 566664442


Q ss_pred             ceeEEecC-CCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecC---CCCCeeEEEECcCCCEEEE
Q 001163          498 TKQYIFEG-HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA---PGHSSTMMAYSADGARLFS  568 (1134)
Q Consensus       498 ~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~  568 (1134)
                      +....... ....|..+.-  +.. ..+..|+.+|..+. .............   .-..|.++....+|..-+.
T Consensus       236 ~~sn~~~~lp~~~I~ll~q--D~q-G~lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~  306 (671)
T COG3292         236 RASNWGPMLPSGNILLLVQ--DAQ-GELWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVG  306 (671)
T ss_pred             cccccCCCCcchheeeeec--ccC-CCEEEeecccceeE-ecCCCCccccccccCCccccccceeeccCCCEeee
Confidence            22211111 2334444432  223 35666776665432 2222222221111   1224566666667765443

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=84.88  E-value=87  Score=37.37  Aligned_cols=99  Identities=10%  Similarity=0.196  Sum_probs=57.0

Q ss_pred             EEEEEecCCceeeeeccCC-----eEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC
Q 001163          780 SRLIYTNSGLAILALASNA-----VHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN  854 (1134)
Q Consensus       780 ~~l~~spdg~~l~~~~~dg-----~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d  854 (1134)
                      ..+.|-|.|..+++.+.||     .+.++.-+                   -+..|..-..    .+-...+..++|+-.
T Consensus       250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErN-------------------GLrHGef~lr----~~~dEk~~~~~wn~~  306 (1243)
T COG5290         250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERN-------------------GLRHGEFDLR----VGCDEKAFLENWNLL  306 (1243)
T ss_pred             hccccccCCceeeeeccCCCCCcceEEEEccC-------------------CcccCCcccc----CCchhhhhhhhhhHH
Confidence            4578999999999887654     23333211                   0111211000    012344556777777


Q ss_pred             CCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEE
Q 001163          855 DSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIA  901 (1134)
Q Consensus       855 g~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la  901 (1134)
                      ...++.+..+.+++|-..+..-.....-....+.-+.|+|.....|.
T Consensus       307 s~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~  353 (1243)
T COG5290         307 STVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTLL  353 (1243)
T ss_pred             HHHHHHhhcceEEEEEccceEEEEEEeecCCCcceeeeccccCcEEE
Confidence            67777777889999987665433333224456778899984333333

>PRK13613 lipoprotein LpqB; Provisional

Probab=84.53  E-value=71  Score=38.30  Aligned_cols=192  Identities=9%  Similarity=-0.012  Sum_probs=100.6

Q ss_pred             CeeEEEEcCCCCeEEEee-CC-eEEEEEccCCeE----EEEecCCCCCeEEEEEcCCCCcEEEEEe-CCC--cEEEEEcc
Q 001163          845 AVPCFALSKNDSYVMSAS-GG-KISLFNMMTFKT----MTTFMPPPPAATFLAFHPQDNNIIAIGM-EDS--SIQIYNVR  915 (1134)
Q Consensus       845 ~v~~v~~s~dg~~la~~s-dg-~i~lwd~~~~~~----~~~~~~~~~~v~~l~~sp~~~~~la~g~-~dg--~i~iwd~~  915 (1134)
                      .+.+++.++++..+|... ++ .+++..+..+..    ..... .....+.-.|.+ ++.+..+-. .++  .+++..- 
T Consensus       364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~-~~~~Lt~PS~d~-~g~vWtvd~~~~~~~vl~v~~~-  440 (599)
T PRK13613        364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVT-ADGRLTSPSWDG-RGDLWVVDRDPADPRLLWLLQG-  440 (599)
T ss_pred             CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceee-ccCcccCCcCcC-CCCEEEecCCCCCceEEEEEcC-
Confidence            677899999999888776 44 466665533322    11111 123466677777 454333311 122  2555543 


Q ss_pred             cceEE--EeccCccC-ceEEEEEeeCCCEEEEEeC---CCcEEEEECCCCcccc---ceeeeecCCCCCCCCCceEEEEc
Q 001163          916 VDEVK--TKLKGHQK-RITGLAFSNTLNVLVSSGA---DSQLCVWSTDGWEKQA---SKFLTIPNGRTASALADTRVQFH  986 (1134)
Q Consensus       916 ~~~~~--~~l~~h~~-~V~~l~~s~d~~~l~s~s~---Dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~v~~l~fs  986 (1134)
                      +|+..  ... ...+ .|..+..|+||.+++....   .++|.|=-+.......   .....+....    ..+.+++|.
T Consensus       441 ~G~~~~V~~~-~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l----~~v~~~~W~  515 (599)
T PRK13613        441 DGEPVEVRTP-ELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPEL----EDVTDMSWA  515 (599)
T ss_pred             CCcEEEeecc-ccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCC----CccceeEEc
Confidence            44432  111 2223 7999999999988776543   3556555444322111   1111221111    348899999


Q ss_pred             CCCCEEEEE--eeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCC-EEEEEecCCcE
Q 001163          987 LDQTHLLAV--HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQ-SIYVAFEEGSV 1044 (1134)
Q Consensus       987 ~dg~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~s~s~Dg~i 1044 (1134)
                      .++.+++.+  .++...+|-+.-...-......+.-..+..++-..+.+ .|+.+..++.|
T Consensus       516 ~~~sL~Vlg~~~~~~~~v~~v~vdG~~~~~~~~~~v~~~~~ia~~~~~~~~~v~~~~~~~v  576 (599)
T PRK13613        516 GDSQLVVLGREEGGVQQARYVQVDGSTPPASAPAAVTGVESITASEDERLPLVAGTSEDGI  576 (599)
T ss_pred             CCCEEEEEeccCCCCcceEEEecCCcCcccccccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence            999987754  33344445443221111111112345667777777766 45552444444

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=83.59  E-value=4.6  Score=41.31  Aligned_cols=74  Identities=11%  Similarity=0.102  Sum_probs=52.2

Q ss_pred             EeeCCCEEEEEeCCCcEEEEECCCCccccce--eeeecCCCC----CCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCc
Q 001163          935 FSNTLNVLVSSGADSQLCVWSTDGWEKQASK--FLTIPNGRT----ASALADTRVQFHLDQTHLLAVHETQIAIYEAPKL 1008 (1134)
Q Consensus       935 ~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~--~~~~~~~~~----~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~ 1008 (1134)
                      +..++++|+..+.+|.+++||+.+.+.....  +..+.....    .....|..+.++.+|.-+++-.+|..+.|+.+-+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~   97 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG   97 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence            4557889999999999999999997654322  111121100    1225688999999998888877889999998643

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=83.23  E-value=4.6  Score=41.28  Aligned_cols=72  Identities=13%  Similarity=0.080  Sum_probs=47.4

Q ss_pred             EccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCC-------CCCCCceeEEEEecCCCCCEEEEEecCCcEEEEe
Q 001163         1028 YSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPT-------NPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIE 1100 (1134)
Q Consensus      1028 ~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~ 1100 (1134)
                      +..++.+|++.+.+|.+++||+.+++....-..-..+..       .....|..+.+.  . +|.-|++-+ +|..+.|+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt--~-~G~PiV~ls-ng~~y~y~   93 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLT--S-NGVPIVTLS-NGDSYSYS   93 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEc--C-CCCEEEEEe-CCCEEEec
Confidence            456899999999999999999999887544321111111       234556555443  3 566666554 57889988


Q ss_pred             CCC
Q 001163         1101 PLE 1103 (1134)
Q Consensus      1101 ~~~ 1103 (1134)
                      .+-
T Consensus        94 ~~L   96 (219)
T PF07569_consen   94 PDL   96 (219)
T ss_pred             ccc
Confidence            753

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others

Probab=82.87  E-value=95  Score=40.79  Aligned_cols=149  Identities=11%  Similarity=0.190  Sum_probs=85.7

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la  434 (1134)
                      |...++.|.-+++|.++=   -.|+.++.||.....         |+.-          -..-...++.+.-.-||+..|
T Consensus       361 H~A~LTgv~~~~~ge~lR---lHd~~LY~~d~~~~~---------Wk~~----------~~~~d~~~S~Ls~qgdG~lYA  418 (1774)
T PF11725_consen  361 HIAHLTGVHTDPDGEQLR---LHDDRLYQFDPNTAR---------WKPP----------PDKSDTPFSSLSRQGDGKLYA  418 (1774)
T ss_pred             HHHHhhccccCCCCCeEE---eecCceeeeccccce---------ecCC----------CCcccchhhhhcccCCCceEe
Confidence            556777778888887553   267778888876552         4310          011233555555555666665


Q ss_pred             EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC------ce--eEEecCC
Q 001163          435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG------TK--QYIFEGH  506 (1134)
Q Consensus       435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~------~~--~~~~~~h  506 (1134)
                       =+.+   .|-|+..+....      .--..+.+...+++|.- .+.++-....+.+|++..-      ++  ...+.+-
T Consensus       419 -k~~~---~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG  487 (1774)
T PF11725_consen  419 -KDDD---TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADG  487 (1774)
T ss_pred             -cCCC---ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCC
Confidence             2222   234454443211      11234667777888883 3667777778899998754      11  2233333


Q ss_pred             CcCEEEEeccccCCccEEEEecCCCcEEEEecCC
Q 001163          507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN  540 (1134)
Q Consensus       507 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~  540 (1134)
                      .....+|.++  +  ..|+.+..+|.++.=++..
T Consensus       488 ~a~A~~VgLs--~--drLFvADseGkLYsa~l~~  517 (1774)
T PF11725_consen  488 KAQAQSVGLS--N--DRLFVADSEGKLYSADLPA  517 (1774)
T ss_pred             chhhhheeec--C--CeEEEEeCCCCEEeccccc
Confidence            3345556653  3  3588888899988776654

It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=82.45  E-value=79  Score=34.36  Aligned_cols=238  Identities=12%  Similarity=0.022  Sum_probs=0.0

Q ss_pred             EecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCC-cccccCCCCCCCCCCeeEEEEcCCCCeEEEee
Q 001163          784 YTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSG-ILMTNDISDTNPEDAVPCFALSKNDSYVMSAS  862 (1134)
Q Consensus       784 ~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s  862 (1134)
                      +.-++++++.|+.+|...+                       +.... ......+    +...|+++.+.+..+.|++-+
T Consensus         9 ~~~~~~~lL~GTe~Gly~~-----------------------~~~~~~~~~~kl~----~~~~v~q~~v~~~~~lLi~Ls   61 (302)
T smart00036        9 ITCDGKWLLVGTEEGLYVL-----------------------NISDQPGTLEKLI----GRRSVTQIWVLEENNVLLMIS   61 (302)
T ss_pred             cccCCcEEEEEeCCceEEE-----------------------EcccCCCCeEEec----CcCceEEEEEEhhhCEEEEEe


Q ss_pred             CCe--EEEEEccCCeE----------------EEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEecc
Q 001163          863 GGK--ISLFNMMTFKT----------------MTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK  924 (1134)
Q Consensus       863 dg~--i~lwd~~~~~~----------------~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~  924 (1134)
                      |+.  ++++++.....                .. .-++.......++........+++....+|.++............
T Consensus        62 gk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~-~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~  140 (302)
T smart00036       62 GKKPQLYSHPLSALVEKKEALGSARLVIRKNVLT-KIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLF  140 (302)
T ss_pred             CCcceEEEEEHHHhhhhhhccCCccccccccceE-eCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhh


Q ss_pred             Cc--------cCceEEEEEeeC--CCEEEEEeCCCcEEEEECCC--CccccceeeeecCCCCCCCCCceEEEEcCCCCEE
Q 001163          925 GH--------QKRITGLAFSNT--LNVLVSSGADSQLCVWSTDG--WEKQASKFLTIPNGRTASALADTRVQFHLDQTHL  992 (1134)
Q Consensus       925 ~h--------~~~V~~l~~s~d--~~~l~s~s~Dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l  992 (1134)
                      ..        ..++..+..+++  ...+..|+..+...++++..  .................  .++....+..+  .+
T Consensus       141 k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~--~p~~i~~l~~~--e~  216 (302)
T smart00036      141 KSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSL--KPISVVQVPRD--EF  216 (302)
T ss_pred             cccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccccccccccccccccc--CceEEEEECCC--eE


Q ss_pred             EEEeeceEEEEeCCC-cccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeec
Q 001163          993 LAVHETQIAIYEAPK-LECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRI 1058 (1134)
Q Consensus       993 ~~~~d~~i~iwd~~~-~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~ 1058 (1134)
                      +.+.|....+-|... ........  .-.....++++.  ..||+.-..++ |.|+++.+++++..+
T Consensus       217 Llc~~~~~v~Vn~~G~~~~r~~~l--~w~~~p~~~~~~--~pyll~~~~~~-ievr~l~~~~l~q~i  278 (302)
T smart00036      217 LLCYDEFGVFVNLYGKRRSRNPIL--HWEFMPESFAYH--SPYLLAFHDNG-IEIRSIKTGELLQEL  278 (302)
T ss_pred             EEEECcEEEEEeCCCCccccceEE--EcCCcccEEEEE--CCEEEEEcCCc-EEEEECCCCceEEEE

Unpublished observations.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=81.80  E-value=88  Score=34.45  Aligned_cols=70  Identities=11%  Similarity=0.032  Sum_probs=37.5

Q ss_pred             CCCEEEEEecC-CCCCeEEEEEeCCCCeeEEE--ecCCCCCceEEEEEcCCCCEEEEEeCCC----eEEEEEcCCCcee
Q 001163          562 DGARLFSCGTN-KEGESYLVEWNESEGAVKRT--YHGLGKRSVGVVQFDTTKNRFLAAGDEF----MIKFWDMDNVNLL  633 (1134)
Q Consensus       562 ~~~~l~~~~~~-~~~~~~i~~wd~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~  633 (1134)
                      +++..+.++.. ......+..||+.+.+....  +....  .....+...+++..+.|+.++    .+.+||..+.+..
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~--r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~  199 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP--RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ  199 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC--CCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence            55666666532 22234588899887654432  22111  112222334566777777553    3568888876543

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=81.77  E-value=60  Score=32.55  Aligned_cols=50  Identities=12%  Similarity=0.305  Sum_probs=36.3

Q ss_pred             CEEEEEeCCCeEEEEEcC--CCceeEEEecCCCCCCcceEEEcCCCcEEEEEECC
Q 001163          611 NRFLAAGDEFMIKFWDMD--NVNLLASIDADGGLQASPCIRFNKEGILLAVSTND  663 (1134)
Q Consensus       611 ~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d  663 (1134)
                      ..|+.+...+.|.+|++.  ..+++..+..   .+.|..+.++..|++|++--.+
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T---v~~V~~l~y~~~GDYlvTlE~k   80 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST---VGRVLQLVYSEAGDYLVTLEEK   80 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc---hhheeEEEeccccceEEEEEee
Confidence            445444666789999988  3445555543   4678899999999999986543

>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins

Probab=81.76  E-value=7.8  Score=34.17  Aligned_cols=80  Identities=21%  Similarity=0.312  Sum_probs=53.3

Q ss_pred             CcchHHHHHHHHHHhhhcCHHHHHHHHHHhcCCCccHHHHHHHhhcccHHHHHHHHcccCcccCCccchhHHHHHHHHHH
Q 001163            2 SSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKY   81 (1134)
Q Consensus         2 ~~~~~e~~~li~q~L~~~g~~~s~~~l~~Esg~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~   81 (1134)
                      ..+..|=+..|.+|++..|   +.+.+++|.||++-  .+|+     +.|+.+..|...+ .+..      .-...+...
T Consensus        32 ~~L~~E~~~Fi~~Fi~~rG---nlKe~e~~lgiSYP--TvR~-----rLd~ii~~lg~~~-~~~~------~~~~~~~~I   94 (113)
T PF09862_consen   32 ARLSPEQLEFIKLFIKNRG---NLKEMEKELGISYP--TVRN-----RLDKIIEKLGYEE-DEEE------EEEDERKEI   94 (113)
T ss_pred             hcCCHHHHHHHHHHHHhcC---CHHHHHHHHCCCcH--HHHH-----HHHHHHHHhCCCC-Cccc------ccchhHHHH
Confidence            3567788899999999999   99999999999984  2221     1233333333211 1111      122567889


Q ss_pred             HHHHhcCC--HHHHHHHHH
Q 001163           82 LEALDKRD--RAKAVEILV   98 (1134)
Q Consensus        82 lEll~~~~--~~~a~~~l~   98 (1134)
                      |+.|+.|+  .++|++.|+
T Consensus        95 L~~L~~GeIs~eeA~~~Lk  113 (113)
T PF09862_consen   95 LDKLEKGEISVEEALEILK  113 (113)
T ss_pred             HHHHHcCCCCHHHHHHHhC
Confidence            99999998  677887764

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=81.71  E-value=13  Score=36.41  Aligned_cols=37  Identities=19%  Similarity=0.368  Sum_probs=29.1

Q ss_pred             eEEEEecCCC-----CCEEEEEecCCcEEEEeCCCC-CCCccC
Q 001163         1074 PLVIAGNPTD-----PNQFALGLTDGGVYIIEPLEA-EGRWGT 1110 (1134)
Q Consensus      1074 ~~~~~~~p~~-----~~~l~s~~~Dg~v~vW~~~~~-~~~~~~ 1110 (1134)
                      .+.++|+|.+     +-+|++.+.+|.|.||..... .++|..
T Consensus        88 vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~~~~~W~~  130 (173)
T PF12657_consen   88 VVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGNPQGEWNR  130 (173)
T ss_pred             EEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCCccccEee
Confidence            3456899842     238999999999999999877 778875

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=81.71  E-value=83  Score=36.82  Aligned_cols=155  Identities=12%  Similarity=0.127  Sum_probs=76.2

Q ss_pred             eEEEEE---eCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCC-
Q 001163          478 LSVVTC---GEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHS-  553 (1134)
Q Consensus       478 ~~l~s~---s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-  553 (1134)
                      +++++.   .......+.| ..|.....+.........  +...++|.+++...  ..+..+|+. ++........... 
T Consensus       116 l~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~--~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~  189 (477)
T PF05935_consen  116 LYFVNGNDWDSSSYTYLID-NNGDVRWYLPLDSGSDNS--FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYY  189 (477)
T ss_dssp             EEEEEETT--BEEEEEEEE-TTS-EEEEE-GGGT--SS--EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE
T ss_pred             EEEEeCCCCCCCceEEEEC-CCccEEEEEccCccccce--eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCccc
Confidence            355555   3455667777 566666555322211111  22346666666554  777777775 3333334333321 


Q ss_pred             --eeEEEECcCCCEEEEEec---------CCCCCeEEEEEeCCCCeeEEEecCC------CC------------------
Q 001163          554 --STMMAYSADGARLFSCGT---------NKEGESYLVEWNESEGAVKRTYHGL------GK------------------  598 (1134)
Q Consensus       554 --v~~~~~s~~~~~l~~~~~---------~~~~~~~i~~wd~~~~~~~~~~~~~------~~------------------  598 (1134)
                        -..+...|+|++|+.+..         ...-...|..+| .+|+.+..+...      ..                  
T Consensus       190 ~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~  268 (477)
T PF05935_consen  190 DFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGR  268 (477)
T ss_dssp             -B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTS
T ss_pred             ccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCC
Confidence              345678899999887762         111123466677 777776654211      00                  


Q ss_pred             --CceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecC
Q 001163          599 --RSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDAD  639 (1134)
Q Consensus       599 --~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~  639 (1134)
                        -.++++.+.+....|+..+ .-..|...|..+++....+..+
T Consensus       269 DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~  312 (477)
T PF05935_consen  269 DWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP  312 (477)
T ss_dssp             BS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred             CccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence              1367888888555555555 5558999999999888887654

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PRK13615 lipoprotein LpqB; Provisional

Probab=81.49  E-value=1.2e+02  Score=35.87  Aligned_cols=154  Identities=9%  Similarity=-0.014  Sum_probs=89.2

Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCC-Cccccce
Q 001163          887 ATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDG-WEKQASK  965 (1134)
Q Consensus       887 v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~-~~~~~~~  965 (1134)
                      ..+++.++ ++..+|....++.+.++... +.....+.  ...++.-.|.++| .+.+.-.+...++..... ++..   
T Consensus       336 ~~s~avS~-dg~~~A~v~~~~~l~vg~~~-~~~~~~~~--~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~---  407 (557)
T PRK13615        336 ADAATLSA-DGRQAAVRNASGVWSVGDGD-RDAVLLDT--RPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGH---  407 (557)
T ss_pred             cccceEcC-CCceEEEEcCCceEEEecCC-Ccceeecc--CCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceE---
Confidence            37889999 78888888778878887655 22222222  2236666787777 555554444455544332 2211   


Q ss_pred             eeeecCCCCCCCCCceEEEEcCCCCEEEEEe----eceEEEEeCCC-cc---cc-ee-eccCCCccCEEEEEEccCCCEE
Q 001163          966 FLTIPNGRTASALADTRVQFHLDQTHLLAVH----ETQIAIYEAPK-LE---CL-KQ-FVPREASGPITHATYSCDSQSI 1035 (1134)
Q Consensus       966 ~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~----d~~i~iwd~~~-~~---~~-~~-~~~~~h~~~v~~~~~s~dg~~l 1035 (1134)
                      .+...-.   ....|..+..|+||-.++.-.    .++|.|--+.. +.   .+ .. .....-...+.++.|..++.++
T Consensus       408 ~v~v~~~---~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~la  484 (557)
T PRK13615        408 PVAVSWT---ATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVA  484 (557)
T ss_pred             Eeecccc---CCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEE
Confidence            1111111   124699999999999988732    35666643322 22   12 11 1111123488999999999986


Q ss_pred             EEE---ecCCcEEEeecCC
Q 001163         1036 YVA---FEEGSVGVLTAST 1051 (1134)
Q Consensus      1036 ~s~---s~Dg~i~vwd~~~ 1051 (1134)
                      +.+   +.+..+++..+..
T Consensus       485 Vl~~~~~~~~~v~~v~v~g  503 (557)
T PRK13615        485 TLTLAPDGERQVELHQVGG  503 (557)
T ss_pred             EEeccCCCCceEEEEECCC
Confidence            654   2335566666663

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=81.40  E-value=95  Score=34.58  Aligned_cols=42  Identities=10%  Similarity=-0.066  Sum_probs=19.2

Q ss_pred             CcEEEEecCCCCceeeecCCC-CCeeEEEECcCCCEEEEEecC
Q 001163          531 GKIKAWLYDNLGSRVDYDAPG-HSSTMMAYSADGARLFSCGTN  572 (1134)
Q Consensus       531 g~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~  572 (1134)
                      ..+.+||..+..-...-.... .........-+++..+.++..
T Consensus       168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~  210 (346)
T TIGR03547       168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEI  210 (346)
T ss_pred             ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeee
Confidence            457778876543322211111 111112223466777777654

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=81.30  E-value=75  Score=33.31  Aligned_cols=186  Identities=10%  Similarity=0.070  Sum_probs=101.7

Q ss_pred             eCCCCCCcccccCCCC----CceeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeecccc
Q 001163          330 YTPQSLGQSSYSTDDL----PKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGAC  405 (1134)
Q Consensus       330 ~s~~~~~l~~~~~d~~----~~~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  405 (1134)
                      +-++|..++.....+.    ..-.+..+.-.+-+..+.|+.+-   +..+..+.-++|.|+.+......           
T Consensus        56 ~v~qG~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~vse~y---vyvad~ssGL~IvDIS~P~sP~~-----------  121 (370)
T COG5276          56 YVGQGFILAILDITNVSLQTHDVLLSVINARDLFADVRVSEEY---VYVADWSSGLRIVDISTPDSPTL-----------  121 (370)
T ss_pred             ccccCceEeeccccCcccccCcceEEEEehhhhhheeEecccE---EEEEcCCCceEEEeccCCCCcce-----------
Confidence            4455555544332222    12344455567778888888763   33445556688888877654322           


Q ss_pred             CccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeC
Q 001163          406 SMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE  485 (1134)
Q Consensus       406 ~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~  485 (1134)
                           ...+.- .+--.++.  -.|++..++.-|.-..+.|+.+.+............+.-..++.|  |+  +-..+..
T Consensus       122 -----~~~lnt-~gyaygv~--vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn--~AYvA~~  189 (370)
T COG5276         122 -----IGFLNT-DGYAYGVY--VSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GN--YAYVAWR  189 (370)
T ss_pred             -----eccccC-CceEEEEE--ecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cC--eEEEEEe
Confidence                 111111 12233333  358888888755557888988766543333344444445677777  55  4566678


Q ss_pred             CCeEEEEECCCCceeE---EecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceee
Q 001163          486 DRVIKVWDAVTGTKQY---IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD  546 (1134)
Q Consensus       486 d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~  546 (1134)
                      |+-+.+-|+.....-.   ... ....+.++..  +++..+++  -.+--+.+-|.........
T Consensus       190 d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~v--sdnr~y~v--vy~egvlivd~s~~ssp~~  248 (370)
T COG5276         190 DGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSV--SDNRAYLV--VYDEGVLIVDVSGPSSPTV  248 (370)
T ss_pred             CCCeEEEEccCCCCCeEEEEEe-cCCceEEEEe--cCCeeEEE--EcccceEEEecCCCCCceE
Confidence            8889999987653322   221 2225666654  33323333  3334455666665554443

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=81.04  E-value=16  Score=46.11  Aligned_cols=167  Identities=13%  Similarity=0.199  Sum_probs=96.8

Q ss_pred             CceeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEE
Q 001163          346 PKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM  425 (1134)
Q Consensus       346 ~~~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  425 (1134)
                      |++.+..++|...=+.+-+-|.=.+.-  -+.|..+.+|+++++.....                   +.+-+..|..+.
T Consensus        68 P~el~eq~~~~~~~~~mGiFpeI~RaW--iTiDn~L~lWny~~~~e~~~-------------------~d~~shtIl~V~  126 (1311)
T KOG1900|consen   68 PDELLEQFSNIECKTDMGIFPEIGRAW--ITIDNNLFLWNYESDNELAE-------------------YDGLSHTILKVG  126 (1311)
T ss_pred             CHHHHHHhcCcceeeeeccchhhcceE--EEeCCeEEEEEcCCCCcccc-------------------ccchhhhheeee
Confidence            445555555555555566556433322  25788899999998654432                   344444555554


Q ss_pred             E--------cCCCCEEEEEeCCCEEEEEEccCCceeeee------eeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEE
Q 001163          426 W--------SPDGTLFGVAYSKHIVHLYTYHGGDELRNH------LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV  491 (1134)
Q Consensus       426 ~--------spd~~~las~s~dg~v~iwd~~~~~~~~~~------~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i  491 (1134)
                      .        -|.=++++....--.|.|+-+.-.+.....      .++......|+|+....+|+   ++-+|.||  .+
T Consensus       127 LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR---IF~~G~dg--~l  201 (1311)
T KOG1900|consen  127 LVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR---IFFAGRDG--NL  201 (1311)
T ss_pred             eecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc---EEEeecCC--CE
Confidence            3        333345555445555666655322211111      11222355789999777887   55566666  44


Q ss_pred             EEC----CCC---c-e----------------eEEec-CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCC
Q 001163          492 WDA----VTG---T-K----------------QYIFE-GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN  540 (1134)
Q Consensus       492 wd~----~~~---~-~----------------~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~  540 (1134)
                      |.+    ..|   + +                +..+. .+..+|..+.+..+.  ..+.+-+..|+|.+||+..
T Consensus       202 yEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR--~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  202 YELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR--NILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             EEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc--ceeeeeccCceEEEEEccC
Confidence            443    211   1 1                01223 567899999885544  7899999999999999875

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=81.01  E-value=7.4  Score=38.19  Aligned_cols=31  Identities=35%  Similarity=0.570  Sum_probs=25.6

Q ss_pred             CCEEEEEEcCCC------CEEEEEeCCCEEEEEEccC
Q 001163          419 ASVNRVMWSPDG------TLFGVAYSKHIVHLYTYHG  449 (1134)
Q Consensus       419 ~~V~~l~~spd~------~~las~s~dg~v~iwd~~~  449 (1134)
                      ..|.+++|||-|      -+||+.+.++.|.||.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            489999999943      3788889999999998654

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1134
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-11
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-07
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-07
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-07
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-07
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-07
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-07
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-07
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-07
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		4e-07
2h9l_A	329	Wdr5delta23 Length = 329		5e-07
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		5e-07
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		5e-07
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		8e-07
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		1e-06
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		1e-06
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-06
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-06
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-06
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-06
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		3e-06
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-05
3bg0_A	316	Architecture Of A Coat For The Nuclear Pore Membran		2e-05
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		3e-05
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		3e-05
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		5e-05
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		6e-05
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		1e-04
2pm9_A	416	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		4e-04
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		6e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 133/569 (23%), Positives = 233/569 (40%), Gaps = 79/569 (13%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
           +++SV  V +SPDG     A     V L+  +G  +L   L    H  SV  +AFS P+ 
Sbjct: 56  HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLT--GHSSSVRGVAFS-PDG 110
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
           Q ++ +  +D+ +K+W+   G       GH S V+ +      + Q I S + D  +K W
Sbjct: 111 Q-TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA--FSPDGQTIASASDDKTVKLW 166
Query: 537 LYDNLGSRVDYDAPGHSSTM--MAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
              N   ++     GHSS++  +A+S DG  + S   +K     +  WN   G + +T  
Sbjct: 167 ---NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT----VKLWNR-NGQLLQTLT 218
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654
           G    SV  V F        +A D+  +K W+  N  LL ++   G   +   + F  +G
Sbjct: 219 GH-SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--GHSSSVNGVAFRPDG 274
Query: 655 ILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVA----SAAIVKAPAIGTFGSANA 710
             +A +++D  +K L N +G +LL+T+   +     VA       I  A    T    N 
Sbjct: 275 QTIASASDDKTVK-LWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 332
Query: 711 NVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKS-RIWKLTEITEPSQCRSLR 769
           N G  L   T  ++++ G++     F+     IA  + +K+ ++W           R+ +
Sbjct: 333 N-GQHLQTLTGHSSSVWGVA-----FSPDGQTIASASDDKTVKLWN----------RNGQ 376
Query: 770 LPDNLT--AMRVSRLIYTNSGLAILALASNAVHKLWKWPRN------------------- 808
           L   LT  +  V  + ++  G  I + + +   KLW   RN                   
Sbjct: 377 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAF 434
Query: 809 --ERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGK- 865
             +  +   A+ ++  +LW     +L T     T    +V   A S +   + SAS  K 
Sbjct: 435 SPDDQTIASASDDKTVKLWNRNGQLLQTL----TGHSSSVRGVAFSPDGQTIASASDDKT 490
Query: 866 ISLFNXXXXXXXXXXXXXXXXXXXXXXHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKG 925
           + L+N                         D   IA   +D +++++N R  ++   L G
Sbjct: 491 VKLWNRNGQLLQTLTGHSSSVRGVA--FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG 547
Query: 926 HQKRITGLAFSNTLNVLVSSGADSQLCVW 954
           H   + G+AFS     + S+ +D  + +W
Sbjct: 548 HSSSVWGVAFSPDGQTIASASSDKTVKLW 576

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/271 (20%), Positives = 114/271 (42%), Gaps = 15/271 (5%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
           +T +V+ V +SP+G     + +  ++ ++  + G   +    I  H   ++D+A+S  + 
Sbjct: 44  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 100
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
            L  V+  +D+ +K+WD  +G      +GH +  Y  C +       I S + D  ++ W
Sbjct: 101 LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 156
Query: 537 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
             D    +     P HS  + A  ++ DG+ + S  ++ +G   +  W+ + G   +T  
Sbjct: 157 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 210
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654
                 V  V+F       LAA  +  +K WD      L +       +      F+  G
Sbjct: 211 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 270
Query: 655 ILLAVSTNDNGIKILANADGIRLLRTVESRT 685
               VS +++ +  + N     +++ ++  T
Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 301

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/271 (20%), Positives = 114/271 (42%), Gaps = 15/271 (5%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
           +T +V+ V +SP+G     + +  ++ ++  + G   +    I  H   ++D+A+S  + 
Sbjct: 46  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 102
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
            L  V+  +D+ +K+WD  +G      +GH +  Y  C +       I S + D  ++ W
Sbjct: 103 LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 158
Query: 537 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
             D    +     P HS  + A  ++ DG+ + S  ++ +G   +  W+ + G   +T  
Sbjct: 159 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 212
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654
                 V  V+F       LAA  +  +K WD      L +       +      F+  G
Sbjct: 213 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 272
Query: 655 ILLAVSTNDNGIKILANADGIRLLRTVESRT 685
               VS +++ +  + N     +++ ++  T
Sbjct: 273 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 303

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/271 (20%), Positives = 114/271 (42%), Gaps = 15/271 (5%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
           +T +V+ V +SP+G     + +  ++ ++  + G   +    I  H   ++D+A+S  + 
Sbjct: 28  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 84
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
            L  V+  +D+ +K+WD  +G      +GH +  Y  C +       I S + D  ++ W
Sbjct: 85  LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 537 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
             D    +     P HS  + A  ++ DG+ + S  ++ +G   +  W+ + G   +T  
Sbjct: 141 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 194
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654
                 V  V+F       LAA  +  +K WD      L +       +      F+  G
Sbjct: 195 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 254
Query: 655 ILLAVSTNDNGIKILANADGIRLLRTVESRT 685
               VS +++ +  + N     +++ ++  T
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 285

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/212 (22%), Positives = 94/212 (44%), Gaps = 15/212 (7%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
           +T +V+ V +SP+G     + +  ++ ++  + G   +    I  H   ++D+A+S  + 
Sbjct: 18  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 74
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
            L  V+  +D+ +K+WD  +G      +GH +  Y  C +       I S + D  ++ W
Sbjct: 75  LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 130
Query: 537 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
             D    +     P HS  + A  ++ DG+ + S  ++ +G   +  W+ + G   +T  
Sbjct: 131 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 184
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD 626
                 V  V+F       LAA  +  +K WD
Sbjct: 185 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 216

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/212 (22%), Positives = 94/212 (44%), Gaps = 15/212 (7%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
           +T +V+ V +SP+G     + +  ++ ++  + G   +    I  H   ++D+A+S  + 
Sbjct: 21  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 77
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
            L  V+  +D+ +K+WD  +G      +GH +  Y  C +       I S + D  ++ W
Sbjct: 78  LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 133
Query: 537 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
             D    +     P HS  + A  ++ DG+ + S  ++ +G   +  W+ + G   +T  
Sbjct: 134 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 187
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD 626
                 V  V+F       LAA  +  +K WD
Sbjct: 188 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 219

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/212 (22%), Positives = 94/212 (44%), Gaps = 15/212 (7%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
           +T +V+ V +SP+G     + +  ++ ++  + G   +    I  H   ++D+A+S  + 
Sbjct: 22  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 78
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
            L  V+  +D+ +K+WD  +G      +GH +  Y  C +       I S + D  ++ W
Sbjct: 79  LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 134
Query: 537 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
             D    +     P HS  + A  ++ DG+ + S  ++ +G   +  W+ + G   +T  
Sbjct: 135 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 188
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD 626
                 V  V+F       LAA  +  +K WD
Sbjct: 189 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/212 (22%), Positives = 94/212 (44%), Gaps = 15/212 (7%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
           +T +V+ V +SP+G     + +  ++ ++  + G   +    I  H   ++D+A+S  + 
Sbjct: 23  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 79
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
            L  V+  +D+ +K+WD  +G      +GH +  Y  C +       I S + D  ++ W
Sbjct: 80  LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 135
Query: 537 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
             D    +     P HS  + A  ++ DG+ + S  ++ +G   +  W+ + G   +T  
Sbjct: 136 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 189
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD 626
                 V  V+F       LAA  +  +K WD
Sbjct: 190 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 221

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/212 (22%), Positives = 94/212 (44%), Gaps = 15/212 (7%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
           +T +V+ V +SP+G     + +  ++ ++  + G   +    I  H   ++D+A+S  + 
Sbjct: 22  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 78
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
            L  V+  +D+ +K+WD  +G      +GH +  Y  C +       I S + D  ++ W
Sbjct: 79  LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 134
Query: 537 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
             D    +     P HS  + A  ++ DG+ + S  ++ +G   +  W+ + G   +T  
Sbjct: 135 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 188
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD 626
                 V  V+F       LAA  +  +K WD
Sbjct: 189 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/271 (20%), Positives = 114/271 (42%), Gaps = 15/271 (5%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
           +T +V+ V +SP+G     + +  ++ ++  + G   +    I  H   ++D+A+S  + 
Sbjct: 28  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 84
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
            L  V+  +D+ +K+WD  +G      +GH +  Y  C +       I S + D  ++ W
Sbjct: 85  LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 537 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
             D    +     P HS  + A  ++ DG+ + S  ++ +G   +  W+ + G   +T  
Sbjct: 141 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 194
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654
                 V  V+F       LAA  +  +K WD      L +       +      F+  G
Sbjct: 195 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 254
Query: 655 ILLAVSTNDNGIKILANADGIRLLRTVESRT 685
               VS +++ +  + N     +++ ++  T
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 285

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/271 (20%), Positives = 114/271 (42%), Gaps = 15/271 (5%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
           +T +V+ V +SP+G     + +  ++ ++  + G   +    I  H   ++D+A+S  + 
Sbjct: 39  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 95
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
            L  V+  +D+ +K+WD  +G      +GH +  Y  C +       I S + D  ++ W
Sbjct: 96  LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 151
Query: 537 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
             D    +     P HS  + A  ++ DG+ + S  ++ +G   +  W+ + G   +T  
Sbjct: 152 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 205
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654
                 V  V+F       LAA  +  +K WD      L +       +      F+  G
Sbjct: 206 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 265
Query: 655 ILLAVSTNDNGIKILANADGIRLLRTVESRT 685
               VS +++ +  + N     +++ ++  T
Sbjct: 266 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 296

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/271 (20%), Positives = 114/271 (42%), Gaps = 15/271 (5%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
           +T +V+ V +SP+G     + +  ++ ++  + G   +    I  H   ++D+A+S  + 
Sbjct: 27  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 83
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
            L  V+  +D+ +K+WD  +G      +GH +  Y  C +       I S + D  ++ W
Sbjct: 84  LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 139
Query: 537 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
             D    +     P HS  + A  ++ DG+ + S  ++ +G   +  W+ + G   +T  
Sbjct: 140 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 193
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654
                 V  V+F       LAA  +  +K WD      L +       +      F+  G
Sbjct: 194 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 253
Query: 655 ILLAVSTNDNGIKILANADGIRLLRTVESRT 685
               VS +++ +  + N     +++ ++  T
Sbjct: 254 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 284

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/271 (20%), Positives = 114/271 (42%), Gaps = 15/271 (5%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
           +T +V+ V +SP+G     + +  ++ ++  + G   +    I  H   ++D+A+S  + 
Sbjct: 28  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 84
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
            L  V+  +D+ +K+WD  +G      +GH +  Y  C +       I S + D  ++ W
Sbjct: 85  LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 537 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
             D    +     P HS  + A  ++ DG+ + S  ++ +G   +  W+ + G   +T  
Sbjct: 141 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 194
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654
                 V  V+F       LAA  +  +K WD      L +       +      F+  G
Sbjct: 195 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 254
Query: 655 ILLAVSTNDNGIKILANADGIRLLRTVESRT 685
               VS +++ +  + N     +++ ++  T
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 285

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 55/271 (20%), Positives = 115/271 (42%), Gaps = 15/271 (5%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
           +T +V+ V +SP+G     + +  ++ ++  + G   +    I  H   ++D+A+S  + 
Sbjct: 25  HTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 81
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
            L  V+  +D+ +K+WD  +G      +GH + V+  C +       I S + D  ++ W
Sbjct: 82  LL--VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW 137
Query: 537 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
             D    +     P HS  + A  ++ DG+ + S  ++ +G   +  W+ + G   +T  
Sbjct: 138 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 191
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654
                 V  V+F       LAA  +  +K WD      L +       +      F+  G
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 251
Query: 655 ILLAVSTNDNGIKILANADGIRLLRTVESRT 685
               VS +++ +  + N     +++ ++  T
Sbjct: 252 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 282

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 84/207 (40%), Gaps = 29/207 (14%)
Query: 457 LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPH 516
           L++  H G V  L +++      +V+   DR ++VWD   G   ++FEGH S V  +   
Sbjct: 156 LQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 517 HKENIQFIFSTATDGKIKAWLYDNLGSRVD----YDAP-----------------GHSST 555
             +NI++I + + D  +  W      S  D    +D P                 GH ++
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXAS 272
Query: 556 MMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLA 615
           +   S  G  + S   +      L+ W+ ++        G   R    + +D  + R ++
Sbjct: 273 VRTVSGHGNIVVSGSYDNT----LIVWDVAQXKCLYILSGHTDRIYSTI-YDHERKRCIS 327
Query: 616 AGDEFMIKFWDMDNVNLLASIDADGGL 642
           A  +  I+ WD++N  L  ++     L
Sbjct: 328 ASXDTTIRIWDLENGELXYTLQGHTAL 354

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 85/207 (41%), Gaps = 29/207 (14%)
Query: 457 LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPH 516
           L++  H G V  L +++      +V+   DR ++VWD   G   ++FEGH S V  +   
Sbjct: 156 LQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 517 HKENIQFIFSTATDGKIKAWLYDNLGSRVD----YDAP-----------------GHSST 555
             +NI++I + + D  +  W      S  D    +D P                 GH ++
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272
Query: 556 MMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLA 615
           +   S  G  + S   +      L+ W+ ++        G   R    + +D  + R ++
Sbjct: 273 VRTVSGHGNIVVSGSYDNT----LIVWDVAQMKCLYILSGHTDRIYSTI-YDHERKRCIS 327
Query: 616 AGDEFMIKFWDMDNVNLLASIDADGGL 642
           A  +  I+ WD++N  L+ ++     L
Sbjct: 328 ASMDTTIRIWDLENGELMYTLQGHTAL 354

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/271 (20%), Positives = 115/271 (42%), Gaps = 15/271 (5%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
           +T +V+ V +SP+G     + +  ++ ++  + G   +    I  H   ++D+A+S  + 
Sbjct: 25  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 81
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
            L  V+  +D+ +K+WD  +G      +GH + V+  C +       I S + D  ++ W
Sbjct: 82  LL--VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW 137
Query: 537 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
             D    +     P HS  + A  ++ DG+ + S  ++ +G   +  W+ + G   +T  
Sbjct: 138 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 191
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654
                 V  V+F       LAA  +  +K WD      L +       +      F+  G
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 251
Query: 655 ILLAVSTNDNGIKILANADGIRLLRTVESRT 685
               VS +++ +  + N     +++ ++  T
Sbjct: 252 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 282

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/271 (20%), Positives = 113/271 (41%), Gaps = 15/271 (5%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
           +T +V+ V +SP+G     + +  ++ ++  + G   +    I  H   ++D+A+S  + 
Sbjct: 25  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 81
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
            L  V+  +D+ +K+WD  +G      +GH +  Y  C +       I S + D  ++ W
Sbjct: 82  LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 537 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
             D          P HS  + A  ++ DG+ + S  ++ +G   +  W+ + G   +T  
Sbjct: 138 --DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 191
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654
                 V  V+F       LAA  +  +K WD      L +       +      F+  G
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 251
Query: 655 ILLAVSTNDNGIKILANADGIRLLRTVESRT 685
               VS +++ +  + N     +++ ++  T
Sbjct: 252 GKWIVSGSEDNMVYIWNLQTKEIVQKLQGHT 282

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/271 (20%), Positives = 115/271 (42%), Gaps = 15/271 (5%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
           +T +V+ V +SP+G     + +  ++ ++  + G   +    I  H   ++D+A+S  + 
Sbjct: 25  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 81
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
            L  V+  +D+ +K+WD  +G      +GH + V+  C +       I S + D  ++ W
Sbjct: 82  LL--VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW 137
Query: 537 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
             D    +     P HS  + A  ++ DG+ + S  ++ +G   +  W+ + G   +T  
Sbjct: 138 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 191
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654
                 V  V+F       LAA  +  +K WD      L +       +      F+  G
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 251
Query: 655 ILLAVSTNDNGIKILANADGIRLLRTVESRT 685
               VS +++ +  + N     +++ ++  T
Sbjct: 252 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 282

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/271 (20%), Positives = 113/271 (41%), Gaps = 15/271 (5%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
           +T +V+ V +SP+G     + +  ++ ++  + G   +    I  H   ++D+A+S  + 
Sbjct: 25  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 81
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
            L  V+  +D+ +K+WD  +G      +GH +  Y  C +       I S + D  ++ W
Sbjct: 82  LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 537 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
             D          P HS  + A  ++ DG+ + S  ++ +G   +  W+ + G   +T  
Sbjct: 138 --DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 191
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654
                 V  V+F       LAA  +  +K WD      L +       +      F+  G
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 251
Query: 655 ILLAVSTNDNGIKILANADGIRLLRTVESRT 685
               VS +++ +  + N     +++ ++  T
Sbjct: 252 GKWIVSGSEDNMVYIWNLQTKEIVQKLQGHT 282

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 80/183 (43%), Gaps = 14/183 (7%)
Query: 461 AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV-YSICPHHKE 519
            H   V  +AFS  N+Q  +V+   DR IK+W+ +   K  I EG E    +  C     
Sbjct: 470 GHTKDVLSVAFSLDNRQ--IVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP 527
Query: 520 NI--QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGES 577
           N     I S + D  +K W   N   R          + +A S DG+   S G  K+G  
Sbjct: 528 NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG--KDGVV 585
Query: 578 YLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRF-LAAGDEFMIKFWDMDNVNLLASI 636
            L  W+ +EG  K+ Y       +  + F  + NR+ L A  E  IK WD+++ +++  +
Sbjct: 586 LL--WDLAEG--KKLYSLEANSVIHALCF--SPNRYWLCAATEHGIKIWDLESKSIVEDL 639
Query: 637 DAD 639
             D
Sbjct: 640 KVD 642

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 20/208 (9%)
Query: 480 VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD 539
           VV+   D  ++VWD  TG   ++  GH + V  +    + + + + S A D  +K W  D
Sbjct: 212 VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV----QYDGRRVVSGAYDFMVKVW--D 265
Query: 540 NLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKR 599
                  +   GH++ + +   DG  + S       ++ +  W+   G    T  G    
Sbjct: 266 PETETCLHTLQGHTNRVYSLQFDGIHVVSGSL----DTSIRVWDVETGNCIHTLTGHQSL 321
Query: 600 SVGVVQFDTTKNRFLAAGD-EFMIKFWDMDNVNLLASIDADGGLQ-ASPCIRFNKEGILL 657
           + G+      K+  L +G+ +  +K WD+     L ++      Q A  C++FNK  ++ 
Sbjct: 322 TSGM----ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVI- 376
Query: 658 AVSTNDNGIKI--LANADGIRLLRTVES 683
             S++D  +K+  L   + IR L T+ES
Sbjct: 377 -TSSDDGTVKLWDLKTGEFIRNLVTLES 403

>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 23/186 (12%)
Query: 461 AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI--FEGHESPVYSICPHHK 518
           +H   ++D    Y   +L+  TC  DR +K++D   G +  I    GHE PV+ +   H 
Sbjct: 11  SHEDMIHDAQMDYYGTRLA--TCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHP 68
Query: 519 ENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYS---ADGARLFSCGTNKEG 575
                + S + D K+  W  +N      ++  GH S++ +      D   + +CG++   
Sbjct: 69  MYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA 128
Query: 576 ESYLVEWNESEGAVKR--TYHGLGKRSV----GVV----------QFDTTKNRFLAAGDE 619
            S L    E +  VK+    H +G  +V     VV          Q      RF + G +
Sbjct: 129 ISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCD 188
Query: 620 FMIKFW 625
            +IK W
Sbjct: 189 NLIKLW 194

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 5/156 (3%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
           +T +V    +S DG       +   + ++    G++L   L+I+AH   V   AFS  + 
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKL---LDIKAHEDEVLCCAFSSDDS 677
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
            ++  TC  D+ +K+WD+ TG   + ++ H   V      +K N   + + + D  +K W
Sbjct: 678 YIA--TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 735
Query: 537 LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 572
             +    R       +S     +S D   L SC  +
Sbjct: 736 DLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD 771

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 5/156 (3%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
           +T +V    +S DG       +   + ++    G++L   L+I+AH   V   AFS  + 
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKL---LDIKAHEDEVLCCAFSSDDS 670
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
            ++  TC  D+ +K+WD+ TG   + ++ H   V      +K N   + + + D  +K W
Sbjct: 671 YIA--TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 728
Query: 537 LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 572
             +    R       +S     +S D   L SC  +
Sbjct: 729 DLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD 764

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 64/330 (19%), Positives = 124/330 (37%), Gaps = 50/330 (15%)
Query: 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVW--ELGACSMPLQASLS 414
           S V  + FHPV  +++    +                  + KVW  E G     L+    
Sbjct: 109 SPVTRVIFHPVFSVMVSASEDA-----------------TIKVWDYETGDFERTLKG--- 148
Query: 415 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP 474
             +T SV  + +   G L     +   + L+ + G + +R     + +V SV+ +    P
Sbjct: 149 --HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIM----P 202
Query: 475 NKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIK 534
           N    +V+   D+ IK+W+  TG     F GH   V  + P+  ++   I S + D  ++
Sbjct: 203 NGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN--QDGTLIASCSNDQTVR 259
Query: 535 AWLYDNLGSRVDYDAPGHSSTMMAYSADG-----ARLFSCGTNKEG-----------ESY 578
            W+      + +     H    ++++ +      +      T K G           +  
Sbjct: 260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 319
Query: 579 LVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA 638
           +  W+ S G    T  G      GV+ F +     L+  D+  ++ WD  N   + +++A
Sbjct: 320 IKMWDVSTGMCLMTLVGHDNWVRGVL-FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 378
Query: 639 DGGLQASPCIRFNKEGILLAVSTNDNGIKI 668
                 S  + F+K    +   + D  +K+
Sbjct: 379 HEHFVTS--LDFHKTAPYVVTGSVDQTVKV 406

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 106/254 (41%), Gaps = 52/254 (20%)
Query: 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQ-ASL 413
           Q  A+ S+DF P +   ++ G++   V ++E                      P +  S 
Sbjct: 146 QARAMNSVDFKPSRPFRIISGSDDNTVAIFE--------------------GPPFKFKST 185
Query: 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGG--------DELRNHLEIEAHVGS 465
             ++T  V+ V ++PDG+LF        + LY    G        D L+N     AH GS
Sbjct: 186 FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKN----VAHSGS 241
Query: 466 VNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENI---- 521
           V  L +S    +++  +   D+ IK+W+  T   +        PV +     +  I    
Sbjct: 242 VFGLTWSPDGTKIA--SASADKTIKIWNVATLKVEKTI-----PVGTRIEDQQLGIIWTK 294
Query: 522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSS--TMMAYSADGARLFSCGTNKEGESYL 579
           Q + S + +G I  ++   LGS +D    GH+   T ++ SADG  LFS     + E ++
Sbjct: 295 QALVSISANGFIN-FVNPELGS-IDQVRYGHNKAITALSSSADGKTLFSA----DAEGHI 348
Query: 580 VEWNESEGAVKRTY 593
             W+ S G   R +
Sbjct: 349 NSWDISTGISNRVF 362

>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/238 (20%), Positives = 98/238 (41%), Gaps = 43/238 (18%)
Query: 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASL 413
           N  S+VK++ F+  Q  +L  G N G++ +W++           K  E  +   PL    
Sbjct: 111 NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN----------KCTESPSNYTPLTPGQ 160
Query: 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY 473
           S    +SV+ V+         +A+++ + H++   G     +  +++A    V  L+++ 
Sbjct: 161 S---MSSVDEVI--------SLAWNQSLAHVFASAGSSNFASIWDLKAK-KEVIHLSYTS 208
Query: 474 PN----KQLSVVT--------------CGEDRVIKVWDAVTGTK--QYIFEGHESPVYSI 513
           PN    +QLSVV                  D  I +WD        Q + +GH+  + S+
Sbjct: 209 PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSL 268
Query: 514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGT 571
              H++    + S+  D  +  W  ++      + A G+      ++ +   LF+C +
Sbjct: 269 DWCHQDE-HLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACAS 325

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 456 HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSIC- 514
           H  +  H   V+DLA S  N     ++   D+ +++WD  TGT    F GH+S VYS+  
Sbjct: 69  HKALTGHNHFVSDLALSQEN--CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAF 126
Query: 515 -PHHKENIQFIFSTATDGKIKAW 536
            P +++    I S   + +IK W
Sbjct: 127 SPDNRQ----ILSAGAEREIKLW 145

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	1134
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.98
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.98
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.98
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.98
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.98
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.9
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.9
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.9
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.88
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.88
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.87
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.87
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.86
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.86
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.85
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.85
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.84
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.84
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.84
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.84
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.84
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.83
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.83
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.82
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.81
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.81
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.8
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.8
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.8
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.8
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.79
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.79
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.78
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.76
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.76
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.75
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.74
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.73
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.71
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.68
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.68
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.68
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.67
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.66
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.66
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.65
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.65
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.64
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.63
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.63
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.61
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.59
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.58
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.57
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.56
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.55
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.55
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.55
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.55
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.55
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.54
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.53
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.53
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.53
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.52
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.52
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.5
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.49
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.49
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.48
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.48
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.47
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.46
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.46
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.45
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.44
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.4
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.39
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.36
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.34
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.32
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.29
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.28
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.25
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.24
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.23
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.23
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.23
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.22
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.22
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.21
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.21
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.2
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.19
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.19
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.16
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.16
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.16
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.14
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.14
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.14
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.13
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.11
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.08
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.03
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.03
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.03
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.98
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.98
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.97
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.96
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.92
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.91
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.89
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.89
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.8
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.79
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.79
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.78
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.76
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.71
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.71
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.67
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.62
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.6
3ott_A	758	Two-component system sensor histidine kinase; beta	98.59
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.59
3ott_A	758	Two-component system sensor histidine kinase; beta	98.57
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.57
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.56
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.54
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.54
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.5
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.5
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.49
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.45
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.43
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.43
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.4
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.4
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.4
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.39
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.37
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.29
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.25
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.23
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.23
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.22
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.21
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.18
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.18
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.17
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.16
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.13
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.11
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.1
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.07
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.05
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.03
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.88
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.82
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.8
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.76
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.75
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.74
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.71
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.69
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.68
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.67
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.62
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.5
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.48
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.44
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.4
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.31
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.22
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.21
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.14
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.09
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.02
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.01
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.99
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.96
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.95
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.92
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.91
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.89
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.88
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.85
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.83
2xtc_A	90	F-box-like/WD repeat-containing protein TBL1X; tra	96.79
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.66
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.61
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.56
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.54
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.52
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.48
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.47
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.41
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.35
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.33
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.32
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.99
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.89
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.88
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.77
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.76
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.75
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.53
1uuj_A	88	Platelet-activating factor acetylhydrolase IB ALP	95.35
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.33
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.9
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	94.89
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.67
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	93.88
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.38
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	93.22
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	92.21
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	92.2
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	91.31
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	90.52
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	90.06
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	89.51
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	87.99
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	87.27
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	86.69
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	82.43
2nxp_A	156	Transcription initiation factor TFIID subunit 5; t	81.89
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	81.01
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	80.82

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4e-68  Score=647.38  Aligned_cols=565  Identities=23%  Similarity=0.368  Sum_probs=484.1

Q ss_pred             EEe-ecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCC
Q 001163          351 MTL-NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD  429 (1134)
Q Consensus       351 ~~~-~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd  429 (1134)
                      +.| +|.+.|++++|||||++ ||+|+.|++|+|||. +++.+..                   +.+|.+.|++++|+||
T Consensus        10 ~~L~GH~~~V~~~a~spdg~~-las~~~d~~v~iWd~-~~~~~~~-------------------l~gh~~~V~~l~fspd   68 (577)
T 2ymu_A           10 NRLEAHSSSVRGVAFSPDGQT-IASASDDKTVKLWNR-NGQLLQT-------------------LTGHSSSVWGVAFSPD   68 (577)
T ss_dssp             EEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEECT-TSCEEEE-------------------EECCSSCEEEEEECTT
T ss_pred             eEECCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEEC-CCCEEEE-------------------EeCCCCCEEEEEECCC
Confidence            445 49999999999999995 689999999999995 5555442                   6789999999999999


Q ss_pred             CCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcC
Q 001163          430 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESP  509 (1134)
Q Consensus       430 ~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~  509 (1134)
                      +++||+++.|++|+|||+. ++.+.   .+.+|...|.+++|+|+++  +|++++.|+.+++|+.. ........+|...
T Consensus        69 g~~las~~~d~~i~vWd~~-~~~~~---~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~~~  141 (577)
T 2ymu_A           69 GQTIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHSSS  141 (577)
T ss_dssp             SSEEEEEETTSCEEEEETT-SCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCSSC
T ss_pred             CCEEEEEeCCCEEEEEECC-CCEEE---EEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccc-cceeeeccCCCCc
Confidence            9999999999999999964 45444   6889999999999999999  89999999999999954 5566677889999


Q ss_pred             EEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCee
Q 001163          510 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV  589 (1134)
Q Consensus       510 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~  589 (1134)
                      |.++.+.++  +..+++++.++.+++|+.. .........+...+..+.++|+++++++++.++    .|++||. +++.
T Consensus       142 v~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~v~~w~~-~~~~  213 (577)
T 2ymu_A          142 VWGVAFSPD--GQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK----TVKLWNR-NGQL  213 (577)
T ss_dssp             EEEEEECTT--SSCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTSSCEEEEETTS----EEEEECT-TSCE
T ss_pred             eeeeeeecC--Cccceecccccceeccccc-eeeeeeccCCCcceeeeeecCCCCEEEEEcCCC----EEEEEeC-CCcE
Confidence            999988654  4789999999999999865 344455666778999999999999999998644    6999995 5778


Q ss_pred             EEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEE
Q 001163          590 KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKIL  669 (1134)
Q Consensus       590 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw  669 (1134)
                      +..+.+|.. .+.+++|+|++.+|++++.|+.|++||. +++.+..+..+  ...|.+++|+|+++.+++++.|+.|++|
T Consensus       214 ~~~~~~~~~-~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~--~~~v~~v~~~~d~~~l~~~~~d~~i~~w  289 (577)
T 2ymu_A          214 LQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH--SSSVNGVAFRPDGQTIASASDDKTVKLW  289 (577)
T ss_dssp             EEEEECCSS-CEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             EEEEecCCC-CEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecC--CCCEEEEEEcCCCCEEEEEeCCCEEEEE
Confidence            888888876 8999999999999999999999999996 56677777654  6789999999999999999999999999


Q ss_pred             EccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccccccccc
Q 001163          670 ANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVE  749 (1134)
Q Consensus       670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  749 (1134)
                      +....  ....+.                                                                   
T Consensus       290 ~~~~~--~~~~~~-------------------------------------------------------------------  300 (577)
T 2ymu_A          290 NRNGQ--LLQTLT-------------------------------------------------------------------  300 (577)
T ss_dssp             ETTSC--EEEEEC-------------------------------------------------------------------
T ss_pred             eCCCc--EEEEEe-------------------------------------------------------------------
Confidence            96432  222221                                                                   


Q ss_pred             ccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCC
Q 001163          750 KSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPS  829 (1134)
Q Consensus       750 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~  829 (1134)
                                              +|...|.+++|+|+++.+++++.|+.+++|++...                     
T Consensus       301 ------------------------~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~---------------------  335 (577)
T 2ymu_A          301 ------------------------GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ---------------------  335 (577)
T ss_dssp             ------------------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC---------------------
T ss_pred             ------------------------cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC---------------------
Confidence                                    26678999999999999999999999999976521                     


Q ss_pred             CcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 001163          830 GILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSS  908 (1134)
Q Consensus       830 ~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~  908 (1134)
                       .+..  +.+  |...+.+++|+|+|++|++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.
T Consensus       336 -~~~~--~~~--~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~  408 (577)
T 2ymu_A          336 -HLQT--LTG--HSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKT  408 (577)
T ss_dssp             -EEEE--ECC--CSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSE
T ss_pred             -eeEE--EeC--CCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCE
Confidence             1111  222  889999999999999999998 899999996 6788889999999999999999 8999999999999


Q ss_pred             EEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCC
Q 001163          909 IQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLD  988 (1134)
Q Consensus       909 i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d  988 (1134)
                      |++||. +++.+..+.+|...|++++|+||+++|++++.|++|++||... +     .+....+|.   ..+.+++|+||
T Consensus       409 v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~-----~~~~~~~~~---~~v~~~~~spd  478 (577)
T 2ymu_A          409 VKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-Q-----LLQTLTGHS---SSVRGVAFSPD  478 (577)
T ss_dssp             EEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-C-----EEEEEECCS---SCEEEEEECTT
T ss_pred             EEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-C-----EEEEEcCCC---CCEEEEEEcCC
Confidence            999995 5788889999999999999999999999999999999999754 2     233334444   47999999999


Q ss_pred             CCEEEE-EeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCC
Q 001163          989 QTHLLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTN 1067 (1134)
Q Consensus       989 g~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1067 (1134)
                      +++|++ +.|+.|++||. +++++..+.  +|...|++++|+|||++|++++.||+|++||. +++.+..+.       +
T Consensus       479 ~~~las~~~d~~i~iw~~-~~~~~~~~~--~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~-------~  547 (577)
T 2ymu_A          479 GQTIASASDDKTVKLWNR-NGQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-------G  547 (577)
T ss_dssp             SCEEEEEETTSEEEEEET-TSCEEEEEE--CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE-------C
T ss_pred             CCEEEEEeCCCEEEEEcC-CCCEEEEEe--CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc-------C
Confidence            999999 57899999995 577777776  89999999999999999999999999999996 566665544       7


Q ss_pred             CCCCceeEEEEecCCCCCEEEEEecCCcEEEEe
Q 001163         1068 PSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIE 1100 (1134)
Q Consensus      1068 h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~ 1100 (1134)
                      |.+.|+.+  +|+| |+++|++++.||+|++||
T Consensus       548 h~~~v~~~--~fs~-dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          548 HSSSVWGV--AFSP-DGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             CSSCEEEE--EECT-TSSCEEEEETTSCEEEEC
T ss_pred             CCCCEEEE--EEcC-CCCEEEEEeCCCEEEEeC
Confidence            88999887  7889 789999999999999997

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.5e-66  Score=629.44  Aligned_cols=576  Identities=14%  Similarity=0.126  Sum_probs=460.8

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la  434 (1134)
                      +.+.+.+++|||||++ +|+++ ++.|+|||+.+++....                   +.+|...|++++|||||++||
T Consensus        17 ~~g~~~~~~~spdg~~-l~~~~-~~~v~l~~~~~~~~~~~-------------------~~~h~~~v~~~~~spdg~~la   75 (611)
T 1nr0_A           17 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYCA   75 (611)
T ss_dssp             CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEEE
T ss_pred             ccCceeEEeeCCCCCE-EEeCC-CCEEEEecCCCcccCeE-------------------ecCCCCceEEEEECCCCcEEE
Confidence            4677889999999995 56776 57999999987765543                   689999999999999999999


Q ss_pred             EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC----CeEEEEECCCCceeEEecCCCcCE
Q 001163          435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED----RVIKVWDAVTGTKQYIFEGHESPV  510 (1134)
Q Consensus       435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d----~~i~iwd~~~~~~~~~~~~h~~~v  510 (1134)
                      +|+.|++|+|||+.+++... ...+.+|.+.|.+++|+|+++  .|++++.+    +.|++||  +++.+..+.+|...|
T Consensus        76 sg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v  150 (611)
T 1nr0_A           76 SGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAM  150 (611)
T ss_dssp             EEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCE
T ss_pred             EEeCCCCEEEeECCCCccee-eEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCCc
Confidence            99999999999997655332 235789999999999999999  67887765    3677776  677788899999999


Q ss_pred             EEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeE
Q 001163          511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK  590 (1134)
Q Consensus       511 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~  590 (1134)
                      .+++|+|+.. ..|++++.|++|++||....+....+..|...|.+++|+|+|++|++++.|+    .|++||..+++.+
T Consensus       151 ~~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~----~i~lwd~~~g~~~  225 (611)
T 1nr0_A          151 NSVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG----TIVLYNGVDGTKT  225 (611)
T ss_dssp             EEEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS----CEEEEETTTCCEE
T ss_pred             eEEEECCCCC-eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCC----cEEEEECCCCcEe
Confidence            9999976542 3699999999999999887777778888999999999999999999998755    5999999999998


Q ss_pred             EEec-------CCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCC-CCCCcceEEEcCCCcEEEEEEC
Q 001163          591 RTYH-------GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG-GLQASPCIRFNKEGILLAVSTN  662 (1134)
Q Consensus       591 ~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~sp~~~~l~~~~~  662 (1134)
                      ..+.       +|.. .|.+++|+|++++|++++.|++|++||+.+++.+..+..+. ....+..+.|  ++..+++++.
T Consensus       226 ~~~~~~~~~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~  302 (611)
T 1nr0_A          226 GVFEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISA  302 (611)
T ss_dssp             EECBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEET
T ss_pred             eeeccccccccccCC-CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeC
Confidence            8884       5655 89999999999999999999999999999999988886431 1223345555  6789999999


Q ss_pred             CCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccc
Q 001163          663 DNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPK  742 (1134)
Q Consensus       663 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  742 (1134)
                      ||.+++|+...+ .....+.                                                            
T Consensus       303 d~~i~~~~~~~~-~~~~~~~------------------------------------------------------------  321 (611)
T 1nr0_A          303 NGFINFVNPELG-SIDQVRY------------------------------------------------------------  321 (611)
T ss_dssp             TCCEEEEETTTT-EEEEEEC------------------------------------------------------------
T ss_pred             CCcEEEEeCCCC-CcceEEc------------------------------------------------------------
Confidence            999999998765 2222221                                                            


Q ss_pred             cccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCC
Q 001163          743 IADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAP  822 (1134)
Q Consensus       743 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~  822 (1134)
                                                     +|...|.+++|+|+|++|++++.|+.|++|++..               
T Consensus       322 -------------------------------gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~---------------  355 (611)
T 1nr0_A          322 -------------------------------GHNKAITALSSSADGKTLFSADAEGHINSWDIST---------------  355 (611)
T ss_dssp             -------------------------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---------------
T ss_pred             -------------------------------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC---------------
Confidence                                           3778899999999999999999999999997653               


Q ss_pred             cccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEE---ecCCCCCeEEEEEcCCCCcE
Q 001163          823 QLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTT---FMPPPPAATFLAFHPQDNNI  899 (1134)
Q Consensus       823 ~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~---~~~~~~~v~~l~~sp~~~~~  899 (1134)
                             +........  +|...|.+++|++++.++..+.|+++++|+..++.....   .........+++|+| ++++
T Consensus       356 -------~~~~~~~~~--~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~  425 (611)
T 1nr0_A          356 -------GISNRVFPD--VHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-DGDI  425 (611)
T ss_dssp             -------CCEEECSSC--SCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-TSSC
T ss_pred             -------Cceeeeccc--CCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-CCcE
Confidence                   222222112  388999999999887554444499999999876543210   001234568899999 7877


Q ss_pred             EEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCC
Q 001163          900 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALA  979 (1134)
Q Consensus       900 la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  979 (1134)
                      ++++ .++.+++|+  .++ +..+. |...+.+++|+|||++||+++.|++|++||+.++...   .... .+|.   ..
T Consensus       426 ~~~~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~---~~~~-~~h~---~~  493 (611)
T 1nr0_A          426 AVAA-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVS---EVKT-IVHP---AE  493 (611)
T ss_dssp             EEEE-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEE---EEEE-EECS---SC
T ss_pred             EEEE-eCceEEEEe--CCc-eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCcee---eeec-cCCC---Cc
Confidence            7776 467899998  344 55554 8888999999999999999999999999999875421   1122 2333   46


Q ss_pred             ceEEEEcCCCCEEEE-EeeceEEEEeCCC-cccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceee
Q 001163          980 DTRVQFHLDQTHLLA-VHETQIAIYEAPK-LECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCR 1057 (1134)
Q Consensus       980 v~~l~fs~dg~~l~~-~~d~~i~iwd~~~-~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~ 1057 (1134)
                      |.+++|||||++|++ +.|++|++||+.+ ++........+|...|.+++|||||++|++++.|++|++||+.++.....
T Consensus       494 v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~  573 (611)
T 1nr0_A          494 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI  573 (611)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCE
T ss_pred             eEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccc
Confidence            999999999999999 5889999999987 66554422335999999999999999999999999999999988753210


Q ss_pred             cCCCcccCCCC-CCCceeEEEEecCCCCCEEEEEecCCcEEEEeCC
Q 001163         1058 INPTAYLPTNP-SLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPL 1102 (1134)
Q Consensus      1058 ~~~~~~~~~~h-~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~ 1102 (1134)
                           ....+| ...|.++  +|+| +++ |++++.||+|++|+++
T Consensus       574 -----~~~~~h~~~~v~~v--~fs~-d~~-l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          574 -----IIKGAHAMSSVNSV--IWLN-ETT-IVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             -----EETTSSTTSCEEEE--EEEE-TTE-EEEEETTSCEEEEECC
T ss_pred             -----hhhccCcccCeeEE--EEcC-CCE-EEEecCCCCEEEEecc
Confidence                 112367 7888877  7888 566 9999999999999984

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.6e-65  Score=624.49  Aligned_cols=561  Identities=23%  Similarity=0.368  Sum_probs=481.6

Q ss_pred             hcCCCCCCCccccccccceeeeEeCCCCCCcccccCCC------CCceeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCC
Q 001163          307 KRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDD------LPKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMG  379 (1134)
Q Consensus       307 ~~~~~~~h~~~vw~~~~~i~~~~~s~~~~~l~~~~~d~------~~~~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg  379 (1134)
                      ++.||+||+++|.       |++|||+|+.+++.+.|.      ...++++++. |...|++++|||||+ +||+|+.|+
T Consensus         8 e~~~L~GH~~~V~-------~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~-~las~~~d~   79 (577)
T 2ymu_A            8 ERNRLEAHSSSVR-------GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDK   79 (577)
T ss_dssp             EEEEECCCSSCEE-------EEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTS
T ss_pred             EeeEECCCCCcEE-------EEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCC-EEEEEeCCC
Confidence            5567889999776       999999999999987654      3566777776 999999999999999 568999999


Q ss_pred             cEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeee
Q 001163          380 DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEI  459 (1134)
Q Consensus       380 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l  459 (1134)
                      +|+|||+. ++.+..                   +.+|...|.+++|+||+++|++++.|+.+++|+.......    ..
T Consensus        80 ~i~vWd~~-~~~~~~-------------------~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~----~~  135 (577)
T 2ymu_A           80 TVKLWNRN-GQLLQT-------------------LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ----TL  135 (577)
T ss_dssp             CEEEEETT-SCEEEE-------------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEE----EE
T ss_pred             EEEEEECC-CCEEEE-------------------EECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceee----ec
Confidence            99999964 444432                   6789999999999999999999999999999998765422    47


Q ss_pred             ecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecC
Q 001163          460 EAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD  539 (1134)
Q Consensus       460 ~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~  539 (1134)
                      .+|...|.++.|+|++.  .+++++.++.+++|+. ..........|...|.++++.+  ++.++++++.|+.|++||..
T Consensus       136 ~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~w~~~  210 (577)
T 2ymu_A          136 TGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP--DGQTIASASDDKTVKLWNRN  210 (577)
T ss_dssp             CCCSSCEEEEEECTTSS--CEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECT--TSSCEEEEETTSEEEEECTT
T ss_pred             cCCCCceeeeeeecCCc--cceecccccceecccc-ceeeeeeccCCCcceeeeeecC--CCCEEEEEcCCCEEEEEeCC
Confidence            78999999999999999  7899999999999994 5566777788999999998865  45899999999999999964


Q ss_pred             CCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC
Q 001163          540 NLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE  619 (1134)
Q Consensus       540 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  619 (1134)
                       .+....+..+...|.+++|+|++++|++++.++    .|++||. +++.+..+.+|.. .+.+++|+|+++.+++++.|
T Consensus       211 -~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~----~i~~w~~-~~~~~~~~~~~~~-~v~~v~~~~d~~~l~~~~~d  283 (577)
T 2ymu_A          211 -GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK----TVKLWNR-NGQLLQTLTGHSS-SVNGVAFRPDGQTIASASDD  283 (577)
T ss_dssp             -SCEEEEEECCSSCEEEEEECTTSSCEEEEETTS----CEEEECT-TSCEEEEECCCSS-CEEEEEECTTSSEEEEEETT
T ss_pred             -CcEEEEEecCCCCEEEEEECCCCCEEEEEeCCC----EEEEEeC-CCCEEEEEecCCC-CEEEEEEcCCCCEEEEEeCC
Confidence             556667778888999999999999999998654    5999995 5677888888876 89999999999999999999


Q ss_pred             CeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcc
Q 001163          620 FMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKA  699 (1134)
Q Consensus       620 g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  699 (1134)
                      +.|++||. +++.+..+..|  ...|.+++|+|+++++++++.||.|++|+....  .+..+.                 
T Consensus       284 ~~i~~w~~-~~~~~~~~~~h--~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~--~~~~~~-----------------  341 (577)
T 2ymu_A          284 KTVKLWNR-NGQLLQTLTGH--SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--HLQTLT-----------------  341 (577)
T ss_dssp             SCEEEEET-TSCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTSC--EEEEEC-----------------
T ss_pred             CEEEEEeC-CCcEEEEEecC--CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC--eeEEEe-----------------
Confidence            99999996 45667777644  678999999999999999999999999997543  111111                 


Q ss_pred             cccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccE
Q 001163          700 PAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRV  779 (1134)
Q Consensus       700 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i  779 (1134)
                                                                                                +|...|
T Consensus       342 --------------------------------------------------------------------------~~~~~v  347 (577)
T 2ymu_A          342 --------------------------------------------------------------------------GHSSSV  347 (577)
T ss_dssp             --------------------------------------------------------------------------CCSSCE
T ss_pred             --------------------------------------------------------------------------CCCCCE
Confidence                                                                                      266788


Q ss_pred             EEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEE
Q 001163          780 SRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVM  859 (1134)
Q Consensus       780 ~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la  859 (1134)
                      .+++|+|+|+.+++++.|+.+++|+...                       +.+. .+.+  |...|.+++|+|||++|+
T Consensus       348 ~~~~~s~~g~~l~~~~~dg~v~~~~~~~-----------------------~~~~-~~~~--~~~~v~~~~~s~dg~~l~  401 (577)
T 2ymu_A          348 WGVAFSPDGQTIASASDDKTVKLWNRNG-----------------------QLLQ-TLTG--HSSSVRGVAFSPDGQTIA  401 (577)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTC-----------------------CEEE-EEEC--CSSCEEEEEECTTSSCEE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEcCCC-----------------------CEEE-EecC--CCCCeEEEEECCCCCEEE
Confidence            9999999999999999999999997432                       1111 1222  889999999999999999


Q ss_pred             Eee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeC
Q 001163          860 SAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNT  938 (1134)
Q Consensus       860 ~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d  938 (1134)
                      +++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|++++|+||
T Consensus       402 ~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd  478 (577)
T 2ymu_A          402 SASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPD  478 (577)
T ss_dssp             EEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTT
T ss_pred             EEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCC
Confidence            998 899999996 6788889999999999999999 8999999999999999996 57788899999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCcccceeeccC
Q 001163          939 LNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLECLKQFVPR 1017 (1134)
Q Consensus       939 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~ 1017 (1134)
                      +++|++++.|++|++||... +     .+....+|.   ..|++++|+|||++|++ +.|+.|++||. +++++..+.  
T Consensus       479 ~~~las~~~d~~i~iw~~~~-~-----~~~~~~~h~---~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~--  546 (577)
T 2ymu_A          479 GQTIASASDDKTVKLWNRNG-Q-----LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--  546 (577)
T ss_dssp             SCEEEEEETTSEEEEEETTS-C-----EEEEEECCS---SCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE--
T ss_pred             CCEEEEEeCCCEEEEEcCCC-C-----EEEEEeCCC---CCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc--
Confidence            99999999999999999653 2     344445555   57999999999999999 57899999996 578887776  


Q ss_pred             CCccCEEEEEEccCCCEEEEEecCCcEEEee
Q 001163         1018 EASGPITHATYSCDSQSIYVAFEEGSVGVLT 1048 (1134)
Q Consensus      1018 ~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd 1048 (1134)
                      +|.+.|++++|+|||++|+|++.|++|++||
T Consensus       547 ~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          547 GHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            8999999999999999999999999999997

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.2e-64  Score=614.47  Aligned_cols=564  Identities=15%  Similarity=0.185  Sum_probs=455.1

Q ss_pred             eeeEeCCCCCCcccccCCC------CCceeEEEe-ecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeecee
Q 001163          326 LPVAYTPQSLGQSSYSTDD------LPKTVVMTL-NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFK  398 (1134)
Q Consensus       326 ~~~~~s~~~~~l~~~~~d~------~~~~~~~~~-~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~  398 (1134)
                      .+++|+|+|+.+++...+.      ........+ +|...|++++|||||+ +||+|+.||+|+|||+.+++.....   
T Consensus        22 ~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~~---   97 (611)
T 1nr0_A           22 VVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILKT---   97 (611)
T ss_dssp             CCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEEE---
T ss_pred             eEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCc-EEEEEeCCCCEEEeECCCCcceeeE---
Confidence            3688999999988765322      123445555 4999999999999999 5699999999999999766533211   


Q ss_pred             eeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCC----CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecC
Q 001163          399 VWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP  474 (1134)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~d----g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~  474 (1134)
                                    .+.+|.+.|.+++|+|||++||+++.+    +.|++||.  ++...   .+.+|...|++++|+|+
T Consensus        98 --------------~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~---~l~gh~~~v~~v~f~p~  158 (611)
T 1nr0_A           98 --------------TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNG---NLTGQARAMNSVDFKPS  158 (611)
T ss_dssp             --------------EEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCB---CCCCCSSCEEEEEECSS
T ss_pred             --------------eecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCcc---eecCCCCCceEEEECCC
Confidence                          256799999999999999999998875    47888874  44343   58899999999999999


Q ss_pred             CCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec------
Q 001163          475 NKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD------  548 (1134)
Q Consensus       475 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~------  548 (1134)
                      +.. .|++|+.|++|++||..+++++..+.+|...|.+++|++  ++.+|++++.|++|++||+.+++....+.      
T Consensus       159 ~~~-~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fsp--dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~  235 (611)
T 1nr0_A          159 RPF-RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKN  235 (611)
T ss_dssp             SSC-EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSS
T ss_pred             CCe-EEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECC--CCCEEEEEECCCcEEEEECCCCcEeeeeccccccc
Confidence            874 599999999999999999999999999999999999965  55899999999999999998877766653      


Q ss_pred             -CCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCC--CceEEEEEcCCCCEEEEEeCCCeEEEE
Q 001163          549 -APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK--RSVGVVQFDTTKNRFLAAGDEFMIKFW  625 (1134)
Q Consensus       549 -~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iw  625 (1134)
                       .|...|.+++|+|++++|++++.|+    .|++||+.+++.+.++..+..  .....+.|  ++..+++++.||.+++|
T Consensus       236 ~~h~~~V~~v~~spdg~~l~s~s~D~----~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~  309 (611)
T 1nr0_A          236 VAHSGSVFGLTWSPDGTKIASASADK----TIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFV  309 (611)
T ss_dssp             CSSSSCEEEEEECTTSSEEEEEETTS----EEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEE
T ss_pred             cccCCCEEEEEECCCCCEEEEEeCCC----eEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEEE
Confidence             5778999999999999999998654    699999999999888865432  13444555  67899999999999999


Q ss_pred             EcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccc
Q 001163          626 DMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTF  705 (1134)
Q Consensus       626 d~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  705 (1134)
                      |...++....+..|  ...|.+++|+|+|++|++++.|++|++||+.++. ....+                        
T Consensus       310 ~~~~~~~~~~~~gh--~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~-~~~~~------------------------  362 (611)
T 1nr0_A          310 NPELGSIDQVRYGH--NKAITALSSSADGKTLFSADAEGHINSWDISTGI-SNRVF------------------------  362 (611)
T ss_dssp             ETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEECS------------------------
T ss_pred             eCCCCCcceEEcCC--CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc-eeeec------------------------
Confidence            99998877777644  7789999999999999999999999999998762 11110                        


Q ss_pred             cccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEe
Q 001163          706 GSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYT  785 (1134)
Q Consensus       706 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  785 (1134)
                                                                                        ..+|...|.+++|+
T Consensus       363 ------------------------------------------------------------------~~~h~~~v~~~~~s  376 (611)
T 1nr0_A          363 ------------------------------------------------------------------PDVHATMITGIKTT  376 (611)
T ss_dssp             ------------------------------------------------------------------SCSCSSCEEEEEEC
T ss_pred             ------------------------------------------------------------------ccCCcceEEEEEEC
Confidence                                                                              01267889999999


Q ss_pred             cCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCe
Q 001163          786 NSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGK  865 (1134)
Q Consensus       786 pdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~  865 (1134)
                      +++ .+++++.|+.+++|++.......                 .......     .......++|+|+|+.++++.++.
T Consensus       377 ~~~-~l~s~s~d~~v~~w~~~~~~~~~-----------------~~~~~~~-----~~~~~~~~~~s~dg~~~~~~~~~~  433 (611)
T 1nr0_A          377 SKG-DLFTVSWDDHLKVVPAGGSGVDS-----------------SKAVANK-----LSSQPLGLAVSADGDIAVAACYKH  433 (611)
T ss_dssp             TTS-CEEEEETTTEEEEECSSSSSSCT-----------------TSCCEEE-----CSSCEEEEEECTTSSCEEEEESSE
T ss_pred             CCC-cEEEEEcCCceEEeecCCccccc-----------------cceeeee-----cCCCCcEEEEeCCCcEEEEEeCce
Confidence            776 58899999999999876421100                 0000000     234567899999999888888999


Q ss_pred             EEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceE--EEeccCccCceEEEEEeeCCCEEE
Q 001163          866 ISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEV--KTKLKGHQKRITGLAFSNTLNVLV  943 (1134)
Q Consensus       866 i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~--~~~l~~h~~~V~~l~~s~d~~~l~  943 (1134)
                      +++|+  .++ +..+. |...+.+++|+| ++++||+|+.|++|++||+.+++.  +.. .+|...|++++|+|||++|+
T Consensus       434 v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~la  507 (611)
T 1nr0_A          434 IAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLV  507 (611)
T ss_dssp             EEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEE
T ss_pred             EEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEE
Confidence            99998  344 55554 778899999999 899999999999999999987653  344 67999999999999999999


Q ss_pred             EEeCCCcEEEEECCC-CccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCcccceeeccCCC-c
Q 001163          944 SSGADSQLCVWSTDG-WEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLECLKQFVPREA-S 1020 (1134)
Q Consensus       944 s~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h-~ 1020 (1134)
                      +++.|++|++|++.+ ++....   ....+|.   ..|.+++|+|||++|++ +.|++|++||+.+++........+| .
T Consensus       508 s~s~d~~v~~w~~~~~~~~~~~---~~~~~H~---~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~  581 (611)
T 1nr0_A          508 ATDQSRKVIPYSVANNFELAHT---NSWTFHT---AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAM  581 (611)
T ss_dssp             EEETTSCEEEEEGGGTTEESCC---CCCCCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTT
T ss_pred             EEcCCCCEEEEEcCCCCceeee---eeeeecc---cceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcc
Confidence            999999999999986 332110   0122244   57999999999999999 5899999999998764331223478 8


Q ss_pred             cCEEEEEEccCCCEEEEEecCCcEEEeecC
Q 001163         1021 GPITHATYSCDSQSIYVAFEEGSVGVLTAS 1050 (1134)
Q Consensus      1021 ~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~ 1050 (1134)
                      ..|.+++|+||++ |++++.|++|++|++.
T Consensus       582 ~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          582 SSVNSVIWLNETT-IVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             SCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred             cCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence            9999999999999 9999999999999973

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.7e-63  Score=662.69  Aligned_cols=616  Identities=15%  Similarity=0.175  Sum_probs=506.5

Q ss_pred             eecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCE
Q 001163          353 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL  432 (1134)
Q Consensus       353 ~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~  432 (1134)
                      .+|.+.|++++|||+|+ ++|+|+.||+|+|||+.+++.+..                   +.+|.+.|.+++|+|+|++
T Consensus       612 ~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~~~  671 (1249)
T 3sfz_A          612 RPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFSSDDSY  671 (1249)
T ss_dssp             CCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTTSSE
T ss_pred             ecccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEecCCCE
Confidence            35999999999999999 568999999999999999987654                   6789999999999999999


Q ss_pred             EEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEE
Q 001163          433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS  512 (1134)
Q Consensus       433 las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~  512 (1134)
                      ||+|+.|+.|+|||+.+++.+.   .+.+|...|.+++|+|++...++++|+.|+.|++||+.+++++..+.+|...|.+
T Consensus       672 l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~  748 (1249)
T 3sfz_A          672 IATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNH  748 (1249)
T ss_dssp             EEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEE
T ss_pred             EEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEE
Confidence            9999999999999999998665   6789999999999999765558999999999999999999999999999999999


Q ss_pred             EeccccCCccEEEEecCCCcEEEEecCCCCceeeecC-------------CCCCeeEEEECcCCCEEEEEecCCCCCeEE
Q 001163          513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA-------------PGHSSTMMAYSADGARLFSCGTNKEGESYL  579 (1134)
Q Consensus       513 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i  579 (1134)
                      ++|++  ++.++++++.||.|++||+........+..             ....+.+++|+|+|+.+++++.     +.+
T Consensus       749 ~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~-----~~v  821 (1249)
T 3sfz_A          749 CRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK-----NKV  821 (1249)
T ss_dssp             EEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEET-----TEE
T ss_pred             EEEec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcC-----CcE
Confidence            99966  458999999999999999987665444322             1226788999999999999873     359


Q ss_pred             EEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEE
Q 001163          580 VEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAV  659 (1134)
Q Consensus       580 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~  659 (1134)
                      .+||..++.....+...+...+.+++|+|++.++++++.||.|++||+.++..+..+..|  ...|.+++|+|++.++++
T Consensus       822 ~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h--~~~v~~v~~spdg~~l~s  899 (1249)
T 3sfz_A          822 LLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGH--LSWVHGVMFSPDGSSFLT  899 (1249)
T ss_dssp             EEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEE
T ss_pred             EEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCC--ccceEEEEECCCCCEEEE
Confidence            999999999888887554558999999999999999999999999999999998888755  678999999999999999


Q ss_pred             EECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccc
Q 001163          660 STNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDV  739 (1134)
Q Consensus       660 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~  739 (1134)
                      ++.||.|++|++.+..... ...... . .                                    .      .......
T Consensus       900 ~s~dg~v~vw~~~~~~~~~-~~~~~~-~-~------------------------------------~------~~~~~~~  934 (1249)
T 3sfz_A          900 ASDDQTIRVWETKKVCKNS-AIVLKQ-E-I------------------------------------D------VVFQENE  934 (1249)
T ss_dssp             EETTSCEEEEEHHHHHSCC-SSSEEE-E-E------------------------------------E------EEEETTE
T ss_pred             EeCCCeEEEEEccccceee-eecccc-e-e------------------------------------e------EEEcCCC
Confidence            9999999999986531100 000000 0 0                                    0      0000112


Q ss_pred             ccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccC
Q 001163          740 KPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTN  819 (1134)
Q Consensus       740 ~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~  819 (1134)
                      ..++.....+.+.+|......    ...      .+...+.+++|+|+|+++++++.+|.+++|++..            
T Consensus       935 ~~~~~~~~~~~~~~~~~~~~~----~~~------~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~------------  992 (1249)
T 3sfz_A          935 TMVLAVDNIRGLQLIAGKTGQ----IDY------LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN------------  992 (1249)
T ss_dssp             EEEEEEESSSSEEEEEESSCC----EEE------ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT------------
T ss_pred             cEEEEecCCcceEEEecCcce----EEE------cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC------------
Confidence            223333333444555433211    110      1456799999999999999999999999997653            


Q ss_pred             CCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCc
Q 001163          820 QAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN  898 (1134)
Q Consensus       820 ~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~  898 (1134)
                                +..... +.  +|...|.+++|+|+|+++++++ ||.|++||+.+++... +..|...|.+++|+| ++ 
T Consensus       993 ----------~~~~~~-~~--~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~- 1056 (1249)
T 3sfz_A          993 ----------NRVFSS-GV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DS- 1056 (1249)
T ss_dssp             ----------TSCEEE-CC--CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-SS-
T ss_pred             ----------Cceeee-cc--cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcC-CC-
Confidence                      222221 22  3899999999999999999998 8999999999988764 557899999999999 55 


Q ss_pred             EEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCC
Q 001163          899 IIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASAL  978 (1134)
Q Consensus       899 ~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  978 (1134)
                      .+++++.||.|++||+.+++.+..+.+|.+.|++++|+|+++++++++.|++|++||+.+++     .+....+|.   .
T Consensus      1057 ~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~-----~~~~l~~h~---~ 1128 (1249)
T 3sfz_A         1057 RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS-----PLHELKGHN---G 1128 (1249)
T ss_dssp             EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSS-----CSBCCCCCS---S
T ss_pred             cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcc-----eeeeeccCC---C
Confidence            57889999999999999999999999999999999999999999999999999999998866     233444554   4


Q ss_pred             CceEEEEcCCCCEEEEE-eeceEEEEeCCCcccceeec-------cCCCccCEEEEEEccCCCEEEEEecCCcEEEeecC
Q 001163          979 ADTRVQFHLDQTHLLAV-HETQIAIYEAPKLECLKQFV-------PREASGPITHATYSCDSQSIYVAFEEGSVGVLTAS 1050 (1134)
Q Consensus       979 ~v~~l~fs~dg~~l~~~-~d~~i~iwd~~~~~~~~~~~-------~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~ 1050 (1134)
                      .|.+++|+|||++|+++ .||.|++||+.+++.+..+.       ..+|.+.|++++|||||++|++++  |+|++||+.
T Consensus      1129 ~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~ 1206 (1249)
T 3sfz_A         1129 CVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVA 1206 (1249)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSS
T ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECC
Confidence            79999999999999994 78999999999998877651       136889999999999999999885  899999999


Q ss_pred             CCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCC
Q 001163         1051 TLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1103 (1134)
Q Consensus      1051 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~ 1103 (1134)
                      +++.+..+.       +|...|..+  +|+| |+.+|++++.||.|++|++.+
T Consensus      1207 ~g~~~~~~~-------~~~~~i~~~--~~s~-dg~~l~~~~~dg~v~vw~l~e 1249 (1249)
T 3sfz_A         1207 TGDSSQTFY-------TNGTNLKKI--HVSP-DFRTYVTVDNLGILYILQVLE 1249 (1249)
T ss_dssp             SCBCCCCCC-------CSSCCCCCC--EECS-SSCCEEEECTTCCEEEECCCC
T ss_pred             CCceeeeee-------ccCCcccEE--EECC-CCCEEEEecCCcEEEEEeecC
Confidence            998865544       466778777  7889 789999999999999999864

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=7.2e-59  Score=570.92  Aligned_cols=557  Identities=11%  Similarity=0.143  Sum_probs=469.7

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCc----cceeeeceeeeeccccCccccccccccCCCC-EEEEEEcC-
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSR----ERIAVKSFKVWELGACSMPLQASLSSDYTAS-VNRVMWSP-  428 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~sp-  428 (1134)
                      |...|++++|||+|+++ |+++ ++.|+|||+.++    +....                   +.+|... |++++|+| 
T Consensus        17 ~~~~v~~~~~spdg~~l-~~~~-~~~v~v~~~~~~~~~~~~~~~-------------------~~~h~~~~v~~~~~sp~   75 (615)
T 1pgu_A           17 QRNFTTHLSYDPTTNAI-AYPC-GKSAFVRCLDDGDSKVPPVVQ-------------------FTGHGSSVVTTVKFSPI   75 (615)
T ss_dssp             CTTCCCCCEEETTTTEE-EEEE-TTEEEEEECCSSCCSSCSEEE-------------------ECTTTTSCEEEEEECSS
T ss_pred             ccCceeEEEECCCCCEE-EEec-CCeEEEEECCCCCCccccceE-------------------EecCCCceEEEEEECcC
Confidence            77899999999999954 6666 889999999987    54442                   6789999 99999999 


Q ss_pred             -CCCEEEEEeCCCEEEEEEccCCc-----eeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC----CeEEEEECCCCc
Q 001163          429 -DGTLFGVAYSKHIVHLYTYHGGD-----ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED----RVIKVWDAVTGT  498 (1134)
Q Consensus       429 -d~~~las~s~dg~v~iwd~~~~~-----~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d----~~i~iwd~~~~~  498 (1134)
                       ++++||+|+.||.|+|||+.+++     .......+.+|...|.+++|+|+++  +|++++.+    +.|++||  +++
T Consensus        76 ~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~~~  151 (615)
T 1pgu_A           76 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--SGN  151 (615)
T ss_dssp             TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--TCC
T ss_pred             CCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--CCC
Confidence             99999999999999999997651     1223336788999999999999999  78888887    6888887  778


Q ss_pred             eeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCC---CeeEEEECcC-CCEEEEEecCCC
Q 001163          499 KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH---SSTMMAYSAD-GARLFSCGTNKE  574 (1134)
Q Consensus       499 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~---~v~~~~~s~~-~~~l~~~~~~~~  574 (1134)
                      .+..+.+|...|.+++|+++.. .++++++.|+.|++||+...+....+..+..   .|.+++|+|+ ++++++++.++ 
T Consensus       152 ~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-  229 (615)
T 1pgu_A          152 SLGEVSGHSQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR-  229 (615)
T ss_dssp             EEEECCSCSSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTC-
T ss_pred             cceeeecCCccEEEEEECCCCC-cEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCC-
Confidence            8999999999999999976542 3899999999999999998888888888888   8999999999 99999998654 


Q ss_pred             CCeEEEEEeCCCCeeEEEe-c---CCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCC--CCCCcceE
Q 001163          575 GESYLVEWNESEGAVKRTY-H---GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG--GLQASPCI  648 (1134)
Q Consensus       575 ~~~~i~~wd~~~~~~~~~~-~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~v  648 (1134)
                         .|++||+.+++.+..+ .   .|.. .+.+++|+ ++.+|++++.||.|++||+.+++.+..+..+.  ....+.++
T Consensus       230 ---~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  304 (615)
T 1pgu_A          230 ---KISCFDGKSGEFLKYIEDDQEPVQG-GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV  304 (615)
T ss_dssp             ---CEEEEETTTCCEEEECCBTTBCCCS-CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEE
T ss_pred             ---eEEEEECCCCCEeEEecccccccCC-ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEE
Confidence               5999999999999998 5   5555 89999999 99999999999999999999999998887652  12456677


Q ss_pred             EEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccC
Q 001163          649 RFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVG  728 (1134)
Q Consensus       649 ~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  728 (1134)
                      .|+ ++.++++++.||.|++|++.++ .....+.                                              
T Consensus       305 ~~~-~~~~l~~~~~~g~i~~~d~~~~-~~~~~~~----------------------------------------------  336 (615)
T 1pgu_A          305 VAT-GNGRIISLSLDGTLNFYELGHD-EVLKTIS----------------------------------------------  336 (615)
T ss_dssp             EEE-ETTEEEEEETTSCEEEEETTEE-EEEEEEC----------------------------------------------
T ss_pred             EeC-CCCeEEEEECCCCEEEEECCCC-cEEEEEe----------------------------------------------
Confidence            775 8899999999999999998764 3332222                                              


Q ss_pred             CCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCC
Q 001163          729 MSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRN  808 (1134)
Q Consensus       729 ~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~  808 (1134)
                                                                   +|...|.+++| |+   +++++.||.+++|++.  
T Consensus       337 ---------------------------------------------~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~--  365 (615)
T 1pgu_A          337 ---------------------------------------------GHNKGITALTV-NP---LISGSYDGRIMEWSSS--  365 (615)
T ss_dssp             ---------------------------------------------CCSSCEEEEET-TT---TEEEETTSCEEETTTT--
T ss_pred             ---------------------------------------------CCCCCEEEEEe-cC---cEEECCCCeEEEEEch--
Confidence                                                         26778999999 88   9999999999999653  


Q ss_pred             CCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCe
Q 001163          809 ERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAA  887 (1134)
Q Consensus       809 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v  887 (1134)
                                             .+.   .  +|...|.+++| +++.++++++ |+.|++||+.+++...       .+
T Consensus       366 -----------------------~~~---~--~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~-------~~  409 (615)
T 1pgu_A          366 -----------------------SMH---Q--DHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS-------QP  409 (615)
T ss_dssp             -----------------------EEE---C--CCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS-------CE
T ss_pred             -----------------------hhc---C--cccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccC-------Cc
Confidence                                   111   1  38999999999 6567777777 9999999987655432       68


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeC-CCcEEEEECCCCcccccee
Q 001163          888 TFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGA-DSQLCVWSTDGWEKQASKF  966 (1134)
Q Consensus       888 ~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~iwd~~~~~~~~~~~  966 (1134)
                      .+++|+| ++.+++++ .++.+++|++.+++.+..+. |...+.+++|+  +++|++++. |+.|++||+.+++...   
T Consensus       410 ~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~---  481 (615)
T 1pgu_A          410 KVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF---  481 (615)
T ss_dssp             EEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEE---
T ss_pred             eEEEEcC-CCCEEEEe-CCCceEEEeccCCceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccc---
Confidence            8999999 88888877 88999999999999888887 88999999999  889999999 9999999998854211   


Q ss_pred             eeecCCCCCCCCCceEEEEcCCCCEEEEE-eeceEEEEeCCCcccceeeccCC-CccCEEEEEEcc----------CCCE
Q 001163          967 LTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLECLKQFVPRE-ASGPITHATYSC----------DSQS 1034 (1134)
Q Consensus       967 ~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~-h~~~v~~~~~s~----------dg~~ 1034 (1134)
                       ....++.   ..+.+++|+|||++|+++ .|+.|++||+.+++.+..+.  + |...|++++|+|          |+++
T Consensus       482 -~~~~~~~---~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~h~~~v~~~~~sp~~~~~~~~~~~~~~  555 (615)
T 1pgu_A          482 -DLKTPLR---AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW--AFRTSKINAISWKPAEKGANEEEIEEDL  555 (615)
T ss_dssp             -ECSSCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCS--CCCSSCEEEEEECCCC------CCSCCE
T ss_pred             -cccCCcc---CceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEee--cCCCCceeEEEEcCccccccccccCCCE
Confidence             3334443   579999999999999995 78999999999999988776  5 899999999999          9999


Q ss_pred             EEEEecCCcEEEeecCCC-cceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCC
Q 001163         1035 IYVAFEEGSVGVLTASTL-RLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1103 (1134)
Q Consensus      1035 l~s~s~Dg~i~vwd~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~ 1103 (1134)
                      |++++.||+|++||+.++ +.+..+.       +|...|..+  +|+| ++. |++++.||+|++|++..
T Consensus       556 l~~~~~dg~i~iw~~~~~~~~~~~~~-------~h~~~v~~l--~~s~-~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          556 VATGSLDTNIFIYSVKRPMKIIKALN-------AHKDGVNNL--LWET-PST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             EEEEETTSCEEEEESSCTTCCEEETT-------SSTTCEEEE--EEEE-TTE-EEEEETTSCEEEEEEC-
T ss_pred             EEEEcCCCcEEEEECCCCceechhhh-------cCccceEEE--EEcC-CCC-eEEecCCceEEEEeeec
Confidence            999999999999999998 5554443       688888888  7788 577 99999999999999864

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.2e-59  Score=623.05  Aligned_cols=578  Identities=15%  Similarity=0.217  Sum_probs=472.9

Q ss_pred             CCCCCccccccccceeeeEeCCCCCCcccccCCCC-------CceeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEE
Q 001163          311 PFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDL-------PKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVM  382 (1134)
Q Consensus       311 ~~~h~~~vw~~~~~i~~~~~s~~~~~l~~~~~d~~-------~~~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~  382 (1134)
                      +.+|.+.|+       +++|+|+|..+++++.|+.       ....+..+. |...|++++|||+|+ ++++|+.||.|+
T Consensus       611 ~~~h~~~v~-------~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~  682 (1249)
T 3sfz_A          611 VRPHTDAVY-------HACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDS-YIATCSADKKVK  682 (1249)
T ss_dssp             ECCCSSCEE-------EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEE
T ss_pred             EecccccEE-------EEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCC-EEEEEeCCCeEE
Confidence            348888766       8999999999999887763       445666666 999999999999999 568999999999


Q ss_pred             EEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC--CCCEEEEEeCCCEEEEEEccCCceeeeeeeee
Q 001163          383 LWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIE  460 (1134)
Q Consensus       383 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~  460 (1134)
                      |||+.+++.+..                   +.+|...|.+++|+|  ++.++++|+.|+.|++||+.+++...   .+.
T Consensus       683 vwd~~~~~~~~~-------------------~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~---~~~  740 (1249)
T 3sfz_A          683 IWDSATGKLVHT-------------------YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN---TMF  740 (1249)
T ss_dssp             EEETTTCCEEEE-------------------EECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE---EEC
T ss_pred             EEECCCCceEEE-------------------EcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh---eec
Confidence            999999987653                   568999999999999  56699999999999999999988665   678


Q ss_pred             cCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecC-------------CCcCEEEEeccccCCccEEEEe
Q 001163          461 AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG-------------HESPVYSICPHHKENIQFIFST  527 (1134)
Q Consensus       461 ~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-------------h~~~v~~~~~~~~~~~~~l~s~  527 (1134)
                      +|.+.|++++|+|+++  ++++++.||+|++||+.+++....+..             +...+.+++|++  ++..++++
T Consensus       741 ~h~~~v~~~~~sp~~~--~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--dg~~l~~~  816 (1249)
T 3sfz_A          741 GHTNSVNHCRFSPDDE--LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA--DGDKIIVA  816 (1249)
T ss_dssp             CCSSCEEEEEECSSTT--EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCT--TSSEEEEE
T ss_pred             CCCCCEEEEEEecCCC--EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECC--CCCEEEEE
Confidence            9999999999999999  899999999999999999988776542             223677777754  55788877


Q ss_pred             cCCCcEEEEecCCCCceeeec-CCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEE
Q 001163          528 ATDGKIKAWLYDNLGSRVDYD-APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQF  606 (1134)
Q Consensus       528 s~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~  606 (1134)
                      + ++.+.+||+.+......+. .+...+.+++|+|+++++++++.++    .|++||+.++..+..+.+|.. .|.+++|
T Consensus       817 ~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg----~v~vwd~~~~~~~~~~~~h~~-~v~~v~~  890 (1249)
T 3sfz_A          817 A-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQY----CVELWNIDSRLKVADCRGHLS-WVHGVMF  890 (1249)
T ss_dssp             E-TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSS----CEEEEETTTTEEEEEECCCSS-CEEEEEE
T ss_pred             c-CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCC----eEEEEEcCCCceeeecCCCcc-ceEEEEE
Confidence            7 6899999999887776654 6677999999999999999997644    599999999999999999887 8999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEEcCCCceeEEE-----------------------------ecC------CCCCCcceEEEc
Q 001163          607 DTTKNRFLAAGDEFMIKFWDMDNVNLLASI-----------------------------DAD------GGLQASPCIRFN  651 (1134)
Q Consensus       607 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----------------------------~~~------~~~~~v~~v~~s  651 (1134)
                      +|+++++++++.||.|++|++.+.......                             ...      .....+.+++|+
T Consensus       891 spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  970 (1249)
T 3sfz_A          891 SPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLS  970 (1249)
T ss_dssp             CTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEEC
T ss_pred             CCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEc
Confidence            999999999999999999997542211000                             000      012235555666


Q ss_pred             CCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCC
Q 001163          652 KEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSN  731 (1134)
Q Consensus       652 p~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  731 (1134)
                      |+++++++|+.+|.|++|++.++ .....+                                                  
T Consensus       971 p~g~~l~~g~~~g~i~i~d~~~~-~~~~~~--------------------------------------------------  999 (1249)
T 3sfz_A          971 PHLEYVAFGDEDGAIKIIELPNN-RVFSSG--------------------------------------------------  999 (1249)
T ss_dssp             TTSSEEEEEETTSCCEEEETTTT-SCEEEC--------------------------------------------------
T ss_pred             CCCCEEEEEcCCCCEEEEEcCCC-ceeeec--------------------------------------------------
Confidence            66666666666666666655443 111111                                                  


Q ss_pred             CCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCC
Q 001163          732 DSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERN  811 (1134)
Q Consensus       732 ~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~  811 (1134)
                                                               .+|...|.+++|+|+|+++++++.||.+++|++..    
T Consensus      1000 -----------------------------------------~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~---- 1034 (1249)
T 3sfz_A         1000 -----------------------------------------VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT---- 1034 (1249)
T ss_dssp             -----------------------------------------CCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTT----
T ss_pred             -----------------------------------------ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC----
Confidence                                                     13778899999999999999999999999997653    


Q ss_pred             cccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEE
Q 001163          812 STGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLA  891 (1134)
Q Consensus       812 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~  891 (1134)
                                        +....  ..  +|...|.+++|++++.+++.+.|++|++||+.+++....+.+|.+.|++++
T Consensus      1035 ------------------~~~~~--~~--~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~ 1092 (1249)
T 3sfz_A         1035 ------------------GDYVF--LQ--AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCA 1092 (1249)
T ss_dssp             ------------------TEEEC--CB--CCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEE
T ss_pred             ------------------CceEE--Ee--cCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEE
Confidence                              22222  12  288999999999988766555599999999999999999999999999999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccce-eeeec
Q 001163          892 FHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASK-FLTIP  970 (1134)
Q Consensus       892 ~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~  970 (1134)
                      |+| +++++++++.||.|++||+.+++.+..+.+|.+.|++++|+|+|++|++++.||.|++||+.+++..... .....
T Consensus      1093 ~s~-d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~ 1171 (1249)
T 3sfz_A         1093 ISS-DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVE 1171 (1249)
T ss_dssp             ECS-SSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC--
T ss_pred             ECC-CCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEecccccc
Confidence            999 8999999999999999999999999999999999999999999999999999999999999987744321 01111


Q ss_pred             CCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecC
Q 001163          971 NGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTAS 1050 (1134)
Q Consensus       971 ~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~ 1050 (1134)
                      .........|.+++|+|||++|+++. |.|++||+.+++.+..+.  .|...|++++|+|||++|++++.||.|++|++.
T Consensus      1172 ~~~~~~~~~v~~l~fs~dg~~l~s~~-g~v~vwd~~~g~~~~~~~--~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A         1172 EGTATHGGWVTDVCFSPDSKTLVSAG-GYLKWWNVATGDSSQTFY--TNGTNLKKIHVSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp             -----CCSCCCEEEECTTSSCEEEES-SSEEEBCSSSCBCCCCCC--CSSCCCCCCEECSSSCCEEEECTTCCEEEECCC
T ss_pred             ccccccCceEEEEEECCCCCEEEECC-CeEEEEECCCCceeeeee--ccCCcccEEEECCCCCEEEEecCCcEEEEEeec
Confidence            11111225799999999999998874 999999999999988876  688999999999999999999999999999974

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.6e-57  Score=554.89  Aligned_cols=551  Identities=12%  Similarity=0.160  Sum_probs=463.2

Q ss_pred             eeeeEeCCCCCCcccccCCC------CCc----eeEEEee-cCCC-eeEEEEcC--CCCeEEEEEeCCCcEEEEecCCcc
Q 001163          325 ILPVAYTPQSLGQSSYSTDD------LPK----TVVMTLN-QGSA-VKSMDFHP--VQQILLVVGTNMGDVMLWEVGSRE  390 (1134)
Q Consensus       325 i~~~~~s~~~~~l~~~~~d~------~~~----~~~~~~~-h~~~-V~~v~fsp--~g~~lla~gs~dg~v~iwd~~~~~  390 (1134)
                      |.+++|+|+|+.+++.....      ...    +....+. |... |++++|+|  +|+ ++++|+.||.|+|||+.+++
T Consensus        21 v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~-~l~s~~~dg~v~vw~~~~~~   99 (615)
T 1pgu_A           21 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ-YLCSGDESGKVIVWGWTFDK   99 (615)
T ss_dssp             CCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCC-EEEEEETTSEEEEEEEEEEG
T ss_pred             eeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCC-EEEEecCCCEEEEEeCCCCc
Confidence            44899999999888765211      123    4566665 8899 99999999  998 56899999999999997662


Q ss_pred             ceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCC----CEEEEEEccCCceeeeeeeeecCCCCE
Q 001163          391 RIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK----HIVHLYTYHGGDELRNHLEIEAHVGSV  466 (1134)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~d----g~v~iwd~~~~~~~~~~~~l~~h~~~V  466 (1134)
                      .......+           ....+.+|...|.+++|+|++++|++++.+    +.|++||  .++.+.   .+.+|...|
T Consensus       100 ~~~~~~~~-----------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~---~~~~~~~~v  163 (615)
T 1pgu_A          100 ESNSVEVN-----------VKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLG---EVSGHSQRI  163 (615)
T ss_dssp             GGTEEEEE-----------EEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEE---ECCSCSSCE
T ss_pred             cccccccc-----------ccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcce---eeecCCccE
Confidence            10000000           001256799999999999999999999988    7889998  444443   678999999


Q ss_pred             EEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCc---CEEEEeccccCCccEEEEecCCCcEEEEecCCCCc
Q 001163          467 NDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES---PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS  543 (1134)
Q Consensus       467 ~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~  543 (1134)
                      .+++|+|+++. .+++++.|+.|++||+.+++.+..+.+|..   .|.+++|+++ ++.+|++++.|+.|++||+.+.+.
T Consensus       164 ~~~~~~~~~~~-~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~  241 (615)
T 1pgu_A          164 NACHLKQSRPM-RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPD-SGEFVITVGSDRKISCFDGKSGEF  241 (615)
T ss_dssp             EEEEECSSSSC-EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECST-TCCEEEEEETTCCEEEEETTTCCE
T ss_pred             EEEEECCCCCc-EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCE
Confidence            99999999975 699999999999999999999999999999   9999999654 158999999999999999998888


Q ss_pred             eeee-c---CCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCC---CCceEEEEEcCCCCEEEEE
Q 001163          544 RVDY-D---APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG---KRSVGVVQFDTTKNRFLAA  616 (1134)
Q Consensus       544 ~~~~-~---~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~  616 (1134)
                      ...+ .   .+...|.+++|+ +++++++++.+    +.|++||+.+++.+..+..+.   ...+..+.|. ++++++++
T Consensus       242 ~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~  315 (615)
T 1pgu_A          242 LKYIEDDQEPVQGGIFALSWL-DSQKFATVGAD----ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISL  315 (615)
T ss_dssp             EEECCBTTBCCCSCEEEEEES-SSSEEEEEETT----SEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEE
T ss_pred             eEEecccccccCCceEEEEEc-CCCEEEEEcCC----CcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEE
Confidence            7777 5   788899999999 99999999864    469999999999999888763   2356777775 88999999


Q ss_pred             eCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhh
Q 001163          617 GDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAI  696 (1134)
Q Consensus       617 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  696 (1134)
                      +.||.|++||+.+++.+..+..|  ...|.+++| |+   +++++.||.|++|++.    .+.  .              
T Consensus       316 ~~~g~i~~~d~~~~~~~~~~~~~--~~~v~~~~~-~~---l~~~~~dg~i~~w~~~----~~~--~--------------  369 (615)
T 1pgu_A          316 SLDGTLNFYELGHDEVLKTISGH--NKGITALTV-NP---LISGSYDGRIMEWSSS----SMH--Q--------------  369 (615)
T ss_dssp             ETTSCEEEEETTEEEEEEEECCC--SSCEEEEET-TT---TEEEETTSCEEETTTT----EEE--C--------------
T ss_pred             ECCCCEEEEECCCCcEEEEEeCC--CCCEEEEEe-cC---cEEECCCCeEEEEEch----hhc--C--------------
Confidence            99999999999999988888755  678999999 88   9999999999999875    110  0              


Q ss_pred             hcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCcccc
Q 001163          697 VKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTA  776 (1134)
Q Consensus       697 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~  776 (1134)
                                                                                                   .|.
T Consensus       370 -----------------------------------------------------------------------------~~~  372 (615)
T 1pgu_A          370 -----------------------------------------------------------------------------DHS  372 (615)
T ss_dssp             -----------------------------------------------------------------------------CCC
T ss_pred             -----------------------------------------------------------------------------ccc
Confidence                                                                                         267


Q ss_pred             ccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCC
Q 001163          777 MRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDS  856 (1134)
Q Consensus       777 ~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~  856 (1134)
                      ..|.+++| +++..+++++.|+.+++|++...                      .          ....+.+++++|++.
T Consensus       373 ~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~----------------------~----------~~~~~~~~~~s~~~~  419 (615)
T 1pgu_A          373 NLIVSLDN-SKAQEYSSISWDDTLKVNGITKH----------------------E----------FGSQPKVASANNDGF  419 (615)
T ss_dssp             SCEEEEEC-CSTTCCEEEETTTEEEETTEEEE----------------------E----------CSSCEEEEEECSSSE
T ss_pred             CceEEEEE-CCCcEEEEEeCCCCEEEEEcccC----------------------c----------ccCCceEEEEcCCCC
Confidence            78999999 67888999999999999976532                      1          112578999999999


Q ss_pred             eEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeC-CCcEEEEEcccceEE-EeccCccCceEEEE
Q 001163          857 YVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGME-DSSIQIYNVRVDEVK-TKLKGHQKRITGLA  934 (1134)
Q Consensus       857 ~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-dg~i~iwd~~~~~~~-~~l~~h~~~V~~l~  934 (1134)
                      +++++.++.+++|+..+++.+..+. +...+.+++|+   +++|++++. |+.|++||+.+++.. ..+.+|...|++++
T Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~  495 (615)
T 1pgu_A          420 TAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS---QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYIS  495 (615)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC---SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEE
T ss_pred             EEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEc---CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEE
Confidence            9998888999999999999998887 88899999998   579999999 999999999988766 78889999999999


Q ss_pred             EeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCC-CCCCCCCceEEEEcC----------CCCEEEEE-eeceEEE
Q 001163          935 FSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNG-RTASALADTRVQFHL----------DQTHLLAV-HETQIAI 1002 (1134)
Q Consensus       935 ~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~v~~l~fs~----------dg~~l~~~-~d~~i~i 1002 (1134)
                      |+|++++|++++.|+.|++||+.+++     .+....+ |.   ..|.+++|+|          ++++|+++ .|+.|++
T Consensus       496 ~s~~g~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~h~---~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~i  567 (615)
T 1pgu_A          496 ISPSETYIAAGDVMGKILLYDLQSRE-----VKTSRWAFRT---SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFI  567 (615)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTE-----EEECCSCCCS---SCEEEEEECCCC------CCSCCEEEEEETTSCEEE
T ss_pred             ECCCCCEEEEcCCCCeEEEeeCCCCc-----ceeEeecCCC---CceeEEEEcCccccccccccCCCEEEEEcCCCcEEE
Confidence            99999999999999999999999865     3333333 44   5799999999          99999995 7899999


Q ss_pred             EeCCCc-ccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCC
Q 001163         1003 YEAPKL-ECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTAST 1051 (1134)
Q Consensus      1003 wd~~~~-~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~ 1051 (1134)
                      ||+.++ +.+..+.  +|...|++++|+|||+ |++++.||+|++|++.+
T Consensus       568 w~~~~~~~~~~~~~--~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          568 YSVKRPMKIIKALN--AHKDGVNNLLWETPST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             EESSCTTCCEEETT--SSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred             EECCCCceechhhh--cCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence            999988 6666665  8999999999999999 99999999999999875

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-56  Score=563.83  Aligned_cols=602  Identities=11%  Similarity=0.079  Sum_probs=442.5

Q ss_pred             EEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCC
Q 001163          350 VMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD  429 (1134)
Q Consensus       350 ~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd  429 (1134)
                      ...++|...|++++|+|+|+ +||+|+.||+|+|||..+++...                    ...|...|.+++|+| 
T Consensus        11 ~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp-   68 (902)
T 2oaj_A           11 TNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK-   68 (902)
T ss_dssp             EEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-
T ss_pred             ccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-
Confidence            44567999999999999998 67999999999999988765443                    234788999999999 


Q ss_pred             CCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCcee---------
Q 001163          430 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ---------  500 (1134)
Q Consensus       430 ~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~---------  500 (1134)
                      |++|++++.|++|+|||+.+++.+.   .+. |.+.|++++|+|+++  +|++|+.||+|++||+.++++.         
T Consensus        69 g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~  142 (902)
T 2oaj_A           69 GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQK  142 (902)
T ss_dssp             TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHH
T ss_pred             CCEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceeccccc
Confidence            8899999999999999999988765   343 778999999999999  8999999999999999988764         


Q ss_pred             --EEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCC------------------CCCeeEEEEC
Q 001163          501 --YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP------------------GHSSTMMAYS  560 (1134)
Q Consensus       501 --~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------------------~~~v~~~~~s  560 (1134)
                        ..+.+|.++|.+++|+|.. +..+++|+.|+.| +||++..+....+..+                  ...|.+++|+
T Consensus       143 ~~~~~~~h~~~V~sl~~sp~~-~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs  220 (902)
T 2oaj_A          143 SSFFPAARLSPIVSIQWNPRD-IGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH  220 (902)
T ss_dssp             HHTCSSSCCCCCCEEEEETTE-EEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC
T ss_pred             cccccccCCCCeEEEEEccCC-CCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc
Confidence              2346799999999998742 3689999999999 9999987766665544                  3579999999


Q ss_pred             cCCCEEEEEecCCCCCeEEEEEeCCCCeeEEE--ec---CC------------CCCceEEEEEc----CCC-CEEEEEeC
Q 001163          561 ADGARLFSCGTNKEGESYLVEWNESEGAVKRT--YH---GL------------GKRSVGVVQFD----TTK-NRFLAAGD  618 (1134)
Q Consensus       561 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~--~~---~~------------~~~~v~~~~~~----~~~-~~l~~~~~  618 (1134)
                      |+|++|++++.|+    .|++||+++++++..  +.   .|            +...|.+++|+    |++ ..+++|+.
T Consensus       221 pdg~~lasgs~Dg----~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~  296 (902)
T 2oaj_A          221 PNSLHIITIHEDN----SLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS  296 (902)
T ss_dssp             TTSSEEEEEETTC----CEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred             CCCCEEEEEECCC----eEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence            9999999998755    499999999987764  21   12            12368999995    443 45667765


Q ss_pred             C-----CeEEEEEcC------------------CCceeEEEecCCCCCCcceEEEcC----------CCcEEEEEECCCc
Q 001163          619 E-----FMIKFWDMD------------------NVNLLASIDADGGLQASPCIRFNK----------EGILLAVSTNDNG  665 (1134)
Q Consensus       619 d-----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~v~~sp----------~~~~l~~~~~dg~  665 (1134)
                      +     ..+.+|++.                  +.+....+.. .+...|..+.+.+          +...+++++.||.
T Consensus       297 ~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~  375 (902)
T 2oaj_A          297 ISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPL-PTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGE  375 (902)
T ss_dssp             STTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECC-SSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSC
T ss_pred             CCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEec-CCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCc
Confidence            5     378899852                  2223333332 2234677777755          3447889999999


Q ss_pred             EEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccccc
Q 001163          666 IKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIAD  745 (1134)
Q Consensus       666 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  745 (1134)
                      |++|++.++.........+...                                       ....+      ....+  .
T Consensus       376 l~~~~~~~g~~~~~~~~~~~~l---------------------------------------~~~~~------~v~~~--~  408 (902)
T 2oaj_A          376 IETMLYPSGIFTDKASLFPQNL---------------------------------------SWLRP------LATTS--M  408 (902)
T ss_dssp             EEEEETTTCCEECCGGGSCGGG---------------------------------------TTBTT------BEEEE--E
T ss_pred             EEEEECCCCCcccccccCCCcc---------------------------------------cccCC------CeeEE--E
Confidence            9999997663222111111000                                       00000      00000  0


Q ss_pred             ccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCccc
Q 001163          746 EAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLW  825 (1134)
Q Consensus       746 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  825 (1134)
                      ..+....+|+.........    ..+..+|...+.+++|+|+|+.|++++.|++|++||+.......         ...+
T Consensus       409 ~s~~~~~~w~~~~~~~~~~----~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~---------~~~~  475 (902)
T 2oaj_A          409 AASVPNKLWLGALSAAQNK----DYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD---------NASF  475 (902)
T ss_dssp             EEEEEHHHHHHHHHTTBCC----CCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT---------TBCE
T ss_pred             EEEcCHHHHHHHHhcccCC----CCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC---------CceE
Confidence            1112234555332111000    11234577888899999999999999999999999987542100         0000


Q ss_pred             CCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCC------------------------------
Q 001163          826 QPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTF------------------------------  874 (1134)
Q Consensus       826 d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~------------------------------  874 (1134)
                      ...    +...+ +.+|...|.+++|+|||++||+|+ ||+|+|||+.++                              
T Consensus       476 ~~~----l~~~~-~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  550 (902)
T 2oaj_A          476 EVN----LSRTL-NKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVL  550 (902)
T ss_dssp             EEE----HHHHT-TCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSE
T ss_pred             Eee----chhhc-CCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcccc
Confidence            000    00000 113889999999999999999999 999999999876                              


Q ss_pred             ---------------eEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEE-----ecc-CccCceEEE
Q 001163          875 ---------------KTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKT-----KLK-GHQKRITGL  933 (1134)
Q Consensus       875 ---------------~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~-----~l~-~h~~~V~~l  933 (1134)
                                     +++..+.+|.+.|++++|+| +| +||+|+.|++|+|||+.++..+.     .+. +|.+.|++|
T Consensus       551 ~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv  628 (902)
T 2oaj_A          551 VDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCI  628 (902)
T ss_dssp             EECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEE
T ss_pred             ccccccCCCCCCCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEE
Confidence                           34778889999999999999 88 99999999999999998877653     343 899999999


Q ss_pred             EEe-----eCC---CEEEEEeCCCcEEEEEC---CCCccccceeeeecCCCCC--CCCCceEEE-Ec-------------
Q 001163          934 AFS-----NTL---NVLVSSGADSQLCVWST---DGWEKQASKFLTIPNGRTA--SALADTRVQ-FH-------------  986 (1134)
Q Consensus       934 ~~s-----~d~---~~l~s~s~Dg~i~iwd~---~~~~~~~~~~~~~~~~~~~--~~~~v~~l~-fs-------------  986 (1134)
                      +|+     |||   ++|++++.|++|++||+   .+|+..     ....++..  ..+.|..++ |+             
T Consensus       629 ~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~-----~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~  703 (902)
T 2oaj_A          629 EFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFD-----VQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPK  703 (902)
T ss_dssp             EEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEE-----EEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHH
T ss_pred             EEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEE-----EEecCceecCCCCceEEEEeEecCCCCcccCCHHH
Confidence            999     885   89999999999999999   555522     22222210  013455555 65             


Q ss_pred             ---------CCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEE---E------EccCCCEEEEEecCCcEEEee
Q 001163          987 ---------LDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHA---T------YSCDSQSIYVAFEEGSVGVLT 1048 (1134)
Q Consensus       987 ---------~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~---~------~s~dg~~l~s~s~Dg~i~vwd 1048 (1134)
                               +++..|+++ +..|+||++.++++.....  .|.-.+.++   .      |+++|..|++++.||+|++|+
T Consensus       704 ~~~l~~~~~~~~~~l~~~-~~~ir~~~~~~~k~~~k~~--~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s  780 (902)
T 2oaj_A          704 MQNLSKGLCIPGIVLITG-FDDIRLITLGKSKSTHKGF--KYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFT  780 (902)
T ss_dssp             HHGGGGTCCCCEEEEEEC-SSEEEEECTTCCCEEEEEC--SSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEE
T ss_pred             HhccCCCCCCCeEEEEEe-ccceEEEeCccccceeeEc--ccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEE
Confidence                     555555544 8899999999999887774  555666666   5      789999999999999999999


Q ss_pred             cCCCcceeecCCC
Q 001163         1049 ASTLRLRCRINPT 1061 (1134)
Q Consensus      1049 ~~~~~~~~~~~~~ 1061 (1134)
                      +.+++.+..+...
T Consensus       781 ~p~l~~~~~~~~~  793 (902)
T 2oaj_A          781 IPDFKEQMSEHIP  793 (902)
T ss_dssp             TTTCCEEEEEECS
T ss_pred             CcchHHHhhccCC
Confidence            9999998776643

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.7e-55  Score=549.05  Aligned_cols=592  Identities=10%  Similarity=0.089  Sum_probs=431.9

Q ss_pred             cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163          414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD  493 (1134)
Q Consensus       414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd  493 (1134)
                      ..+|.+.|++++|+|++++||+|+.||+|+|||..+++...    ...|...|.+++|+| |+  +|++++.|++|++||
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~----~~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd   85 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI----KLEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS   85 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE----ECSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE----EcCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEE
Confidence            35899999999999999999999999999999998766433    234888999999999 77  799999999999999


Q ss_pred             CCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCce-----------eeecCCCCCeeEEEECcC
Q 001163          494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR-----------VDYDAPGHSSTMMAYSAD  562 (1134)
Q Consensus       494 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-----------~~~~~~~~~v~~~~~s~~  562 (1134)
                      +.+++++..+. |...|++++|++  ++++|++|+.||.|++||++.....           .....|...|.+++|+|+
T Consensus        86 ~~~~~~~~~~~-~~~~V~~v~~sp--~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~  162 (902)
T 2oaj_A           86 LYSQKVLTTVF-VPGKITSIDTDA--SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR  162 (902)
T ss_dssp             TTTCSEEEEEE-CSSCEEEEECCT--TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred             CCCCcEEEEEc-CCCCEEEEEECC--CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence            99999999886 778999999965  4589999999999999999876542           223456779999999996


Q ss_pred             C-CEEEEEecCCCCCeEEEEEeCCCCeeEEEecCC-----------------CCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 001163          563 G-ARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL-----------------GKRSVGVVQFDTTKNRFLAAGDEFMIKF  624 (1134)
Q Consensus       563 ~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~-----------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i  624 (1134)
                      + ..+++++.    ++.| +||+++++.+..+..+                 +...|.+++|+|++.+|++++.||.|++
T Consensus       163 ~~~~l~~g~~----dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l  237 (902)
T 2oaj_A          163 DIGTVLISYE----YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF  237 (902)
T ss_dssp             EEEEEEEECS----SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred             CCCEEEEEeC----CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence            4 67777754    4468 9999999999888765                 1237999999999999999999999999


Q ss_pred             EEcCCCceeEEEec-----C-----------CCCCCcceEEEc----CCC-cEEEEEECCC-----cEEEEEccCCceeE
Q 001163          625 WDMDNVNLLASIDA-----D-----------GGLQASPCIRFN----KEG-ILLAVSTNDN-----GIKILANADGIRLL  678 (1134)
Q Consensus       625 wd~~~~~~~~~~~~-----~-----------~~~~~v~~v~~s----p~~-~~l~~~~~dg-----~i~iw~~~~~~~~~  678 (1134)
                      ||+.+++++.....     +           .+...|.+++|+    |++ .++++|+.|.     .+.+|++.....  
T Consensus       238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~--  315 (902)
T 2oaj_A          238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPR--  315 (902)
T ss_dssp             EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCC--
T ss_pred             EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCC--
Confidence            99999988764221     2           123468999995    443 5677777663     677877431100  


Q ss_pred             EEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecc
Q 001163          679 RTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTE  758 (1134)
Q Consensus       679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~  758 (1134)
                                                                                     ..+++.+....+|+-. 
T Consensus       316 ---------------------------------------------------------------~~~~s~~~~~~~~~~~-  331 (902)
T 2oaj_A          316 ---------------------------------------------------------------YSITSYEGMKNYYANP-  331 (902)
T ss_dssp             ---------------------------------------------------------------GGGCCHHHHHHHHHSC-
T ss_pred             ---------------------------------------------------------------ccccchhhhhhhhcCc-
Confidence                                                                           0011111111111100 


Q ss_pred             cCCccceeccccCCccccccEEEEEEec----------CCceeeeeccCCeEEeeecCCCCCCccc----cccc------
Q 001163          759 ITEPSQCRSLRLPDNLTAMRVSRLIYTN----------SGLAILALASNAVHKLWKWPRNERNSTG----KATT------  818 (1134)
Q Consensus       759 ~~~~~~~~~~~~~~~~~~~~i~~l~~sp----------dg~~l~~~~~dg~i~vw~~~~~~~~~~~----~~~~------  818 (1134)
                          ...+.+..   .+...|..+.+.+          +...+++++.||.+++|++.........    ..+.      
T Consensus       332 ----~~~~~~~~---~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v  404 (902)
T 2oaj_A          332 ----KQMKIFPL---PTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLA  404 (902)
T ss_dssp             ----SEEEEECC---SSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBE
T ss_pred             ----cceEEEec---CCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCe
Confidence                00111110   1446677777765          3346888889999999998543110000    0000      


Q ss_pred             ------CCCCcccCCCC---CcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEE----EE--ec-
Q 001163          819 ------NQAPQLWQPPS---GILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM----TT--FM-  881 (1134)
Q Consensus       819 ------~~~~~~~d~~~---~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~----~~--~~-  881 (1134)
                            .....+|+...   +.. ...+.+  |...+..++|+||+++|++++ |++|++||+.++...    ..  +. 
T Consensus       405 ~~~~~s~~~~~~w~~~~~~~~~~-~~~l~G--~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~  481 (902)
T 2oaj_A          405 TTSMAASVPNKLWLGALSAAQNK-DYLLKG--GVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSR  481 (902)
T ss_dssp             EEEEEEEEEHHHHHHHHHTTBCC-CCSCCC--SBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHH
T ss_pred             eEEEEEEcCHHHHHHHHhcccCC-CCcccC--CcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechh
Confidence                  00112222110   111 112444  778888899999999999999 999999999877421    11  11 


Q ss_pred             ----CCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccc----------------------------------------
Q 001163          882 ----PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD----------------------------------------  917 (1134)
Q Consensus       882 ----~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~----------------------------------------  917 (1134)
                          +|...|.+++|+| ++++||+|+.||+|+||++.++                                        
T Consensus       482 ~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  560 (902)
T 2oaj_A          482 TLNKAKELAVDKISFAA-ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTG  560 (902)
T ss_dssp             HTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTT
T ss_pred             hcCCCCCCceeEEEecC-CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCC
Confidence                7888999999999 9999999999999999999876                                        


Q ss_pred             -----eEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecC-CCCCCCCCceEEEEc-----
Q 001163          918 -----EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPN-GRTASALADTRVQFH-----  986 (1134)
Q Consensus       918 -----~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~fs-----  986 (1134)
                           +++..+.+|.+.|++|+||||| +||+|+.|++|++||+.+........+.... +|.   ..|++++|+     
T Consensus       561 ~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~---~~V~sv~Fs~~~~~  636 (902)
T 2oaj_A          561 VRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQS---ACVTCIEFVIMEYG  636 (902)
T ss_dssp             CSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCC---CCEEEEEEEEEECT
T ss_pred             CCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccc---cceEEEEEEEEecC
Confidence                 2467888999999999999999 9999999999999999875422110111222 454   579999999     


Q ss_pred             CCC---CEEEE-EeeceEEEEeC---CCcccceeeccC---CCccCEEEEE-Ec----------------------cCCC
Q 001163          987 LDQ---THLLA-VHETQIAIYEA---PKLECLKQFVPR---EASGPITHAT-YS----------------------CDSQ 1033 (1134)
Q Consensus       987 ~dg---~~l~~-~~d~~i~iwd~---~~~~~~~~~~~~---~h~~~v~~~~-~s----------------------~dg~ 1033 (1134)
                      |||   ++|++ +.|++|++||+   .+|++...+...   .|.+.|.+++ |+                      ++|.
T Consensus       637 ~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~  716 (902)
T 2oaj_A          637 DDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGI  716 (902)
T ss_dssp             TSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEE
T ss_pred             CCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeE
Confidence            886   78888 58899999999   788887777621   1346777777 65                      4565


Q ss_pred             EEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEE-EE------ecCCCCCEEEEEecCCcEEEEeCCCCCC
Q 001163         1034 SIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLV-IA------GNPTDPNQFALGLTDGGVYIIEPLEAEG 1106 (1134)
Q Consensus      1034 ~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~-~~------~~p~~~~~l~s~~~Dg~v~vW~~~~~~~ 1106 (1134)
                      +|+++  +..|+||++.+++......       +|...+.++. +.      |++ ++..|++++.||+|++|++++.+.
T Consensus       717 ~l~~~--~~~ir~~~~~~~k~~~k~~-------~~~~~~~~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~s~p~l~~  786 (902)
T 2oaj_A          717 VLITG--FDDIRLITLGKSKSTHKGF-------KYPLAATGLSYISTVEKNNDRK-NLTVIITLEINGHLRVFTIPDFKE  786 (902)
T ss_dssp             EEEEC--SSEEEEECTTCCCEEEEEC-------SSCEEEEEEEEEEEECSSSCEE-EEEEEEEEETTSEEEEEETTTCCE
T ss_pred             EEEEe--ccceEEEeCccccceeeEc-------ccceeeeEEEEEEecccccccc-CceEEEEEeCCCcEEEEECcchHH
Confidence            55554  7789999999998875542       2333344441 24      566 688999999999999999998886


Q ss_pred             CccCC
Q 001163         1107 RWGTS 1111 (1134)
Q Consensus      1107 ~~~~~ 1111 (1134)
                      .-...
T Consensus       787 ~~~~~  791 (902)
T 2oaj_A          787 QMSEH  791 (902)
T ss_dssp             EEEEE
T ss_pred             Hhhcc
Confidence            54444

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.5e-47  Score=482.17  Aligned_cols=476  Identities=16%  Similarity=0.234  Sum_probs=384.1

Q ss_pred             EEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC
Q 001163          350 VMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP  428 (1134)
Q Consensus       350 ~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  428 (1134)
                      .+.+. |.+.|++++|||+|+ ++|+|+.||.|+|||+.+++.+..                   +.+|.+.|.+++|+|
T Consensus         6 ~~~~~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~s~   65 (814)
T 3mkq_A            6 KKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKFIA   65 (814)
T ss_dssp             EEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEEG
T ss_pred             ceeeecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEEeC
Confidence            44555 999999999999999 568999999999999999876653                   568999999999999


Q ss_pred             CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC-ceeEEecCCC
Q 001163          429 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHE  507 (1134)
Q Consensus       429 d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~  507 (1134)
                      ++++||+|+.||.|++||+.+++.+.   .+.+|.+.|++++|+|+++  +|++++.|+.|++||+.++ .....+.+|.
T Consensus        66 ~~~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~  140 (814)
T 3mkq_A           66 RKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHE  140 (814)
T ss_dssp             GGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECCS
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCCC
Confidence            99999999999999999999988665   6788999999999999999  7999999999999999987 6778889999


Q ss_pred             cCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCC-CCeeEEEECc--CCCEEEEEecCCCCCeEEEEEeC
Q 001163          508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG-HSSTMMAYSA--DGARLFSCGTNKEGESYLVEWNE  584 (1134)
Q Consensus       508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~wd~  584 (1134)
                      ..|.+++|++. ++..+++++.||.|++||+........+..+. ..+..++|+|  ++.++++++.+    +.|++||+
T Consensus       141 ~~v~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----g~i~~~d~  215 (814)
T 3mkq_A          141 HFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD----LTIKIWDY  215 (814)
T ss_dssp             SCEEEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTT----SEEEEEET
T ss_pred             CcEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCC----CEEEEEEC
Confidence            99999999762 44799999999999999998877777666554 7899999999  99999998764    46999999


Q ss_pred             CCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCc--EEEEEEC
Q 001163          585 SEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI--LLAVSTN  662 (1134)
Q Consensus       585 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~--~l~~~~~  662 (1134)
                      .+++.+..+.+|.. .+.+++|+|+++++++++.||.|++||+.+++.+..+..+  ...+.+++|+|++.  +++++ .
T Consensus       216 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~-~  291 (814)
T 3mkq_A          216 QTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG--LERSWCIATHPTGRKNYIASG-F  291 (814)
T ss_dssp             TTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS--SSSEEEEEECTTCGGGEEEEE-E
T ss_pred             CCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC--CCcEEEEEEccCCCceEEEEE-e
Confidence            99999999998876 8999999999999999999999999999999999988765  56899999999986  45544 4


Q ss_pred             CCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccc
Q 001163          663 DNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPK  742 (1134)
Q Consensus       663 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  742 (1134)
                      ++.+.+|++....                                                                   
T Consensus       292 ~~~~~~~~~~~~~-------------------------------------------------------------------  304 (814)
T 3mkq_A          292 DNGFTVLSLGNDE-------------------------------------------------------------------  304 (814)
T ss_dssp             TTEEEEEECSCCS-------------------------------------------------------------------
T ss_pred             CCCEEEEEcCCCC-------------------------------------------------------------------
Confidence            6678888764431                                                                   


Q ss_pred             cccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCe---EEeeecCCCCCCcccccccC
Q 001163          743 IADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAV---HKLWKWPRNERNSTGKATTN  819 (1134)
Q Consensus       743 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~---i~vw~~~~~~~~~~~~~~~~  819 (1134)
                                                           ..+.++|+|+.+++++.+..   +..-.+.             
T Consensus       305 -------------------------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------------  334 (814)
T 3mkq_A          305 -------------------------------------PTLSLDPVGKLVWSGGKNAAASDIFTAVIR-------------  334 (814)
T ss_dssp             -------------------------------------CCEEECSSSEEEEECCTTSCTTCEEEEECC-------------
T ss_pred             -------------------------------------ceeEECCCCCEEEECcccccceeeeeeecc-------------
Confidence                                                 12345566666665544321   1000000             


Q ss_pred             CCCcccCCCCCcccccC---CCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCC
Q 001163          820 QAPQLWQPPSGILMTND---ISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQD  896 (1134)
Q Consensus       820 ~~~~~~d~~~~~~~~~~---~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~  896 (1134)
                         ..|++..+......   +.  .+...+.+++|+|+|+++++++++.+.+|++.......     .+.+.+++|+| +
T Consensus       335 ---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~-----~~~i~~~~~sp-d  403 (814)
T 3mkq_A          335 ---GNEEVEQDEPLSLQTKELG--SVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKA-----FGKCQDFVWGP-D  403 (814)
T ss_dssp             ---SCCCCCSSSCBCCCCEEEC--CCSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEE-----EEECSEEEECT-T
T ss_pred             ---cccccccCccceeeeecCC--CCccCCceeEECCCCCEEEEecCCEEEEEECccccccC-----CCceEEEEEeC-C
Confidence               11222222222111   11  25677899999999999999999999999987654432     35688999999 8


Q ss_pred             CcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCC---CEEEEEeCCCcEEEEECCCCccccceeeeecCCC
Q 001163          897 NNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTL---NVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGR  973 (1134)
Q Consensus       897 ~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~---~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~  973 (1134)
                      ++++|+++.+|.|++|+        .+.+|...+.+++|+|++   .+|++++.|+.|++||+.+++     .+.....+
T Consensus       404 g~~la~~~~~g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~-----~~~~~~~~  470 (814)
T 3mkq_A          404 SNSYALIDETGQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGT-----LVRRIDVN  470 (814)
T ss_dssp             SSCEEEECTTCCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCC-----EEEEESSC
T ss_pred             CCeEEEEeCCCcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCc-----EEEEEecC
Confidence            99999999999999995        456688889999999998   689999999999999999865     33333333


Q ss_pred             CCCCCCceEEEEcCCCCEEEEE------eeceEEEEeCC
Q 001163          974 TASALADTRVQFHLDQTHLLAV------HETQIAIYEAP 1006 (1134)
Q Consensus       974 ~~~~~~v~~l~fs~dg~~l~~~------~d~~i~iwd~~ 1006 (1134)
                      .      ..++|+|||++|+++      .+..+.+|...
T Consensus       471 ~------~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~  503 (814)
T 3mkq_A          471 A------KDVIWSDNGELVMIVNTNSNGDEASGYTLLFN  503 (814)
T ss_dssp             E------EEEEECTTSSEEEEEECCCSSCSCSEEEEEEC
T ss_pred             C------CEEEEcCCCCEEEEEEcCcccCCceEEEEEec
Confidence            2      389999999999997      66666666443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.5e-45  Score=463.77  Aligned_cols=466  Identities=16%  Similarity=0.194  Sum_probs=384.1

Q ss_pred             ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEE
Q 001163          413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW  492 (1134)
Q Consensus       413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  492 (1134)
                      .+.+|.+.|++++|||++++||+|+.||.|+|||+.+++.+.   .+.+|.+.|++++|+|+++  +|++++.|+.|++|
T Consensus         8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw   82 (814)
T 3mkq_A            8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVF   82 (814)
T ss_dssp             EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEE
T ss_pred             eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEE
Confidence            367899999999999999999999999999999999988665   6789999999999999999  89999999999999


Q ss_pred             ECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCC-CceeeecCCCCCeeEEEECc-CCCEEEEEe
Q 001163          493 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL-GSRVDYDAPGHSSTMMAYSA-DGARLFSCG  570 (1134)
Q Consensus       493 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~  570 (1134)
                      |+.+++.+..+.+|...|.+++|+++  +.+|++++.||.|++||+... .....+..+...|.+++|+| +++.+++++
T Consensus        83 ~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  160 (814)
T 3mkq_A           83 NYNTGEKVVDFEAHPDYIRSIAVHPT--KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC  160 (814)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSS--SSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred             ECCCCcEEEEEecCCCCEEEEEEeCC--CCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe
Confidence            99999999999999999999999654  489999999999999999876 44556777888999999999 888999987


Q ss_pred             cCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcC--CCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceE
Q 001163          571 TNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT--TKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCI  648 (1134)
Q Consensus       571 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v  648 (1134)
                      .++    .|++||+.++.....+..+....+..++|+|  ++.++++++.||.|++||+.+++.+..+..+  ...|.++
T Consensus       161 ~dg----~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~--~~~v~~~  234 (814)
T 3mkq_A          161 LDR----TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH--MSNVSFA  234 (814)
T ss_dssp             TTS----EEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECC--SSCEEEE
T ss_pred             CCC----eEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCC--CCCEEEE
Confidence            644    6999999999888888877756899999999  9999999999999999999999999888765  6689999


Q ss_pred             EEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccC
Q 001163          649 RFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVG  728 (1134)
Q Consensus       649 ~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  728 (1134)
                      +|+|++.++++++.||.|++|++.++ .....+..                                             
T Consensus       235 ~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~---------------------------------------------  268 (814)
T 3mkq_A          235 VFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLNV---------------------------------------------  268 (814)
T ss_dssp             EECSSSSEEEEEETTSCEEEEETTTC-SEEEEECC---------------------------------------------
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEeec---------------------------------------------
Confidence            99999999999999999999998876 23322211                                             


Q ss_pred             CCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCcee-eeeccCCeEEeeecCC
Q 001163          729 MSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAI-LALASNAVHKLWKWPR  807 (1134)
Q Consensus       729 ~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l-~~~~~dg~i~vw~~~~  807 (1134)
                                                                    +...+.+++|+|+|..+ ++++.++.+.+|++..
T Consensus       269 ----------------------------------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (814)
T 3mkq_A          269 ----------------------------------------------GLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN  302 (814)
T ss_dssp             ----------------------------------------------SSSSEEEEEECTTCGGGEEEEEETTEEEEEECSC
T ss_pred             ----------------------------------------------CCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC
Confidence                                                          45678999999999854 6666677788886431


Q ss_pred             CCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CC---eEE------EEEccCCeE-
Q 001163          808 NERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GG---KIS------LFNMMTFKT-  876 (1134)
Q Consensus       808 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg---~i~------lwd~~~~~~-  876 (1134)
                                                           ....+.++|+|+.+++++ +.   .+.      .|++..+.. 
T Consensus       303 -------------------------------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (814)
T 3mkq_A          303 -------------------------------------DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPL  345 (814)
T ss_dssp             -------------------------------------CSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCB
T ss_pred             -------------------------------------CCceeEECCCCCEEEECcccccceeeeeeecccccccccCccc
Confidence                                                 123577889999998876 32   122      233333332 


Q ss_pred             ---EEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEE
Q 001163          877 ---MTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCV  953 (1134)
Q Consensus       877 ---~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~i  953 (1134)
                         ...+..+...+.+++|+| +++++++++ |+.+.+|++......     +.+.+.+++|+|+++++++++.|+.|++
T Consensus       346 ~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~~~~~~~~-----~~~~i~~~~~spdg~~la~~~~~g~v~l  418 (814)
T 3mkq_A          346 SLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYTALAWRNK-----AFGKCQDFVWGPDSNSYALIDETGQIKY  418 (814)
T ss_dssp             CCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEETTTTEEE-----EEEECSEEEECTTSSCEEEECTTCCEEE
T ss_pred             eeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEECcccccc-----CCCceEEEEEeCCCCeEEEEeCCCcEEE
Confidence               234455677899999999 899999998 899999998654432     3567889999999999999999999999


Q ss_pred             EECCCCccccceeeeecCCCCCCCCCceEEEEcCCC---CEEEE-EeeceEEEEeCCCcccceeeccCCCccCEEEEEEc
Q 001163          954 WSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQ---THLLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYS 1029 (1134)
Q Consensus       954 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg---~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s 1029 (1134)
                      |+.-.+             +.   ..+.+++|+|||   ++|++ +.|+.|++||+.+++.+..+.  .|..   .++||
T Consensus       419 ~~~~~~-------------~~---~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~--~~~~---~v~~s  477 (814)
T 3mkq_A          419 YKNFKE-------------VT---SWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRID--VNAK---DVIWS  477 (814)
T ss_dssp             EETTEE-------------CT---TCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEES--SCEE---EEEEC
T ss_pred             EECCCC-------------cc---ceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEe--cCCC---EEEEc
Confidence            963321             11   346778999998   45555 789999999999999888876  4443   99999


Q ss_pred             cCCCEEEEE------ecCCcEEEee
Q 001163         1030 CDSQSIYVA------FEEGSVGVLT 1048 (1134)
Q Consensus      1030 ~dg~~l~s~------s~Dg~i~vwd 1048 (1134)
                      |||++|+++      +.++.+.+|.
T Consensus       478 ~dg~~la~~~~~~~~~~~~~~~~~~  502 (814)
T 3mkq_A          478 DNGELVMIVNTNSNGDEASGYTLLF  502 (814)
T ss_dssp             TTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred             CCCCEEEEEEcCcccCCceEEEEEe
Confidence            999999999      6666555543

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.8e-44  Score=413.38  Aligned_cols=284  Identities=20%  Similarity=0.382  Sum_probs=260.8

Q ss_pred             ecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001163          354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF  433 (1134)
Q Consensus       354 ~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l  433 (1134)
                      +|...|++++|+|+++ ++++|+.||+|+|||+.+++....                   +.+|.+.|.+++|+|++++|
T Consensus       106 gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~-------------------l~~h~~~V~~v~~~~~~~~l  165 (410)
T 1vyh_C          106 GHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHSGKLL  165 (410)
T ss_dssp             CCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTTSSEE
T ss_pred             ccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EeccCCcEEEEEEcCCCCEE
Confidence            3667788999999998 678999999999999999876653                   67899999999999999999


Q ss_pred             EEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEE
Q 001163          434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI  513 (1134)
Q Consensus       434 as~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  513 (1134)
                      ++|+.|++|+|||+.+++.+.   .+.+|...|.+++|+|+++  +|++|+.|++|++||+.++.++.++.+|...|.++
T Consensus       166 ~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~  240 (410)
T 1vyh_C          166 ASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV  240 (410)
T ss_dssp             EEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             EEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEE
Confidence            999999999999999887665   6889999999999999999  89999999999999999999999999999999999


Q ss_pred             eccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcC--------------------CCEEEEEecCC
Q 001163          514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSAD--------------------GARLFSCGTNK  573 (1134)
Q Consensus       514 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~--------------------~~~l~~~~~~~  573 (1134)
                      .+++  ++.+|++++.|++|++||+.+......+..|...|.+++|+|+                    +.++++++.|+
T Consensus       241 ~~~~--~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~  318 (410)
T 1vyh_C          241 RPNQ--DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK  318 (410)
T ss_dssp             EECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred             EECC--CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC
Confidence            8854  5589999999999999999998888888889999999999996                    67899988644


Q ss_pred             CCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCC
Q 001163          574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE  653 (1134)
Q Consensus       574 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~  653 (1134)
                          .|++||+.+++++..+.+|.. .|.+++|+|++.+|++++.||.|++||+.+++.+..+..|  ...|.+++|+|+
T Consensus       319 ----~i~iwd~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h--~~~v~~l~~~~~  391 (410)
T 1vyh_C          319 ----TIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH--EHFVTSLDFHKT  391 (410)
T ss_dssp             ----EEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC--SSCEEEEEECSS
T ss_pred             ----eEEEEECCCCceEEEEECCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCC--CCcEEEEEEcCC
Confidence                699999999999999999887 8999999999999999999999999999999999998865  668999999999


Q ss_pred             CcEEEEEECCCcEEEEEc
Q 001163          654 GILLAVSTNDNGIKILAN  671 (1134)
Q Consensus       654 ~~~l~~~~~dg~i~iw~~  671 (1134)
                      +.+|++|+.||+|++|+.
T Consensus       392 ~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          392 APYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             SSCEEEEETTSEEEEEC-
T ss_pred             CCEEEEEeCCCcEEEEeC
Confidence            999999999999999985

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1e-38  Score=354.38  Aligned_cols=292  Identities=16%  Similarity=0.194  Sum_probs=260.5

Q ss_pred             eEEEe-ecCCCeeEEEEcCCCC---eEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEE
Q 001163          349 VVMTL-NQGSAVKSMDFHPVQQ---ILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRV  424 (1134)
Q Consensus       349 ~~~~~-~h~~~V~~v~fsp~g~---~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  424 (1134)
                      +...+ +|.+.|++++|+|+++   .++++|+.|++|+|||+.+++.....                 .+.+|...|.++
T Consensus        24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~-----------------~l~gh~~~v~~~   86 (321)
T 3ow8_A           24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQW-----------------SLEGHQLGVVSV   86 (321)
T ss_dssp             EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEE-----------------EECCCSSCEEEE
T ss_pred             eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeee-----------------eeccCCCCEEEE
Confidence            33444 4999999999998632   36799999999999999876532211                 267999999999


Q ss_pred             EEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEec
Q 001163          425 MWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE  504 (1134)
Q Consensus       425 ~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  504 (1134)
                      +|+|++.++++++.|++|++||+.+++.+.   .+..|...+.+++|+|+++  +|++++.|+.|++||+.+++....+.
T Consensus        87 ~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~~~~  161 (321)
T 3ow8_A           87 DISHTLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEYSLD  161 (321)
T ss_dssp             EECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEEEEE
T ss_pred             EECCCCCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeEEec
Confidence            999999999999999999999999998665   5778999999999999999  89999999999999999999999999


Q ss_pred             CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeC
Q 001163          505 GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE  584 (1134)
Q Consensus       505 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~  584 (1134)
                      .|...|.+++|++  ++.+|++++.|+.|++||+.+.+....+..+...|.+++|+|++++|++++.|+    .|++||+
T Consensus       162 ~~~~~v~~~~~sp--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg----~i~iwd~  235 (321)
T 3ow8_A          162 TRGKFILSIAYSP--DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDG----YIKIYDV  235 (321)
T ss_dssp             CSSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTS----CEEEEET
T ss_pred             CCCceEEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCC----eEEEEEC
Confidence            9999999999965  558999999999999999998888888888888999999999999999998654    5999999


Q ss_pred             CCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCC
Q 001163          585 SEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN  664 (1134)
Q Consensus       585 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg  664 (1134)
                      ++++....+.+|.. .|.+++|+|++.+|++++.|+.|++||+.+++++..+..|  ...|.+++|+|++.+|++++.||
T Consensus       236 ~~~~~~~~~~~h~~-~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h--~~~v~~v~~s~~g~~l~s~~~d~  312 (321)
T 3ow8_A          236 QHANLAGTLSGHAS-WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH--QDQVWGVKYNGNGSKIVSVGDDQ  312 (321)
T ss_dssp             TTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTC
T ss_pred             CCcceeEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCC--CCcEEEEEECCCCCEEEEEeCCC
Confidence            99999999999887 8999999999999999999999999999999999988755  67899999999999999999999


Q ss_pred             cEEEEEc
Q 001163          665 GIKILAN  671 (1134)
Q Consensus       665 ~i~iw~~  671 (1134)
                      .|++||.
T Consensus       313 ~i~vwd~  319 (321)
T 3ow8_A          313 EIHIYDC  319 (321)
T ss_dssp             CEEEEEC
T ss_pred             eEEEEeC
Confidence            9999996

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.5e-38  Score=355.20  Aligned_cols=292  Identities=18%  Similarity=0.303  Sum_probs=259.9

Q ss_pred             eeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEE
Q 001163          348 TVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW  426 (1134)
Q Consensus       348 ~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  426 (1134)
                      ...+++. |...|++++|+|+|+ ++++|+.||+|+|||+.+++.+..                   +..|...|.+++|
T Consensus        46 ~~~~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~~~  105 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCAY  105 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEEEE
T ss_pred             hhheeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEEEE
Confidence            3455555 999999999999999 568999999999999998876653                   4679999999999


Q ss_pred             cCCCCEEEEEeCCCEEEEEEccCCce-eeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecC
Q 001163          427 SPDGTLFGVAYSKHIVHLYTYHGGDE-LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG  505 (1134)
Q Consensus       427 spd~~~las~s~dg~v~iwd~~~~~~-~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  505 (1134)
                      +|++++|++|+.|+.|++||+.+++. ......+.+|.+.|.++.|++++.   +++++.|++|++||+.+++.+..+.+
T Consensus       106 s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~~  182 (340)
T 1got_B          106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFTG  182 (340)
T ss_dssp             CTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             CCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEcC
Confidence            99999999999999999999987642 223346789999999999998875   89999999999999999999999999


Q ss_pred             CCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC
Q 001163          506 HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES  585 (1134)
Q Consensus       506 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~  585 (1134)
                      |...|.+++|++  ++.++++|+.|+.|++||+.+......+..|...|.+++|+|+++++++++.|+    .|++||++
T Consensus       183 h~~~v~~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~----~v~iwd~~  256 (340)
T 1got_B          183 HTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA----TCRLFDLR  256 (340)
T ss_dssp             CSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTS----CEEEEETT
T ss_pred             CCCceEEEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCC----cEEEEECC
Confidence            999999999966  458999999999999999999888888888999999999999999999998755    59999999


Q ss_pred             CCeeEEEecCCC-CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCC
Q 001163          586 EGAVKRTYHGLG-KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN  664 (1134)
Q Consensus       586 ~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg  664 (1134)
                      +++.+..+.... ...+.+++|+|++++|++|+.||.|++||..+++.+..+..|  ...|.+++|+|+|.+|++|+.||
T Consensus       257 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h--~~~v~~~~~s~dg~~l~s~s~D~  334 (340)
T 1got_B          257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH--DNRVSCLGVTDDGMAVATGSWDS  334 (340)
T ss_dssp             TTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEECTTSSCEEEEETTS
T ss_pred             CCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecC--CCcEEEEEEcCCCCEEEEEcCCc
Confidence            998887775432 236899999999999999999999999999999999888865  67899999999999999999999


Q ss_pred             cEEEEE
Q 001163          665 GIKILA  670 (1134)
Q Consensus       665 ~i~iw~  670 (1134)
                      .|++||
T Consensus       335 ~i~iWd  340 (340)
T 1got_B          335 FLKIWN  340 (340)
T ss_dssp             CEEEEC
T ss_pred             cEEecC
Confidence            999996

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3e-38  Score=356.17  Aligned_cols=294  Identities=15%  Similarity=0.238  Sum_probs=261.4

Q ss_pred             eEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc
Q 001163          349 VVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS  427 (1134)
Q Consensus       349 ~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  427 (1134)
                      ..+.+. |...|++++|+|+++ +|++|+.||+|+|||..+++....                   +..|...|.+++|+
T Consensus        56 ~~~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~~~s  115 (354)
T 2pbi_B           56 TRRTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMACAYA  115 (354)
T ss_dssp             EEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEEEEC
T ss_pred             EEEEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEEEEC
Confidence            345555 999999999999998 568999999999999988876543                   45688899999999


Q ss_pred             CCCCEEEEEeCCCEEEEEEccCCce---eeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEec
Q 001163          428 PDGTLFGVAYSKHIVHLYTYHGGDE---LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE  504 (1134)
Q Consensus       428 pd~~~las~s~dg~v~iwd~~~~~~---~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  504 (1134)
                      |+|++||+|+.|+.+++|++.....   ......+.+|...|.+++|+|++.  .|++++.|++|++||+.+++++..+.
T Consensus       116 p~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~~  193 (354)
T 2pbi_B          116 PSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSFH  193 (354)
T ss_dssp             TTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEEc
Confidence            9999999999999999999875421   122335778999999999999998  79999999999999999999999999


Q ss_pred             CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeC
Q 001163          505 GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE  584 (1134)
Q Consensus       505 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~  584 (1134)
                      +|...|.++++++.+++.+|++|+.||.|++||+++......+..|...|.+++|+|+++++++++.|+    .|++||+
T Consensus       194 ~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~----~v~lwd~  269 (354)
T 2pbi_B          194 GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDA----TCRLYDL  269 (354)
T ss_dssp             CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS----CEEEEET
T ss_pred             CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCC----eEEEEEC
Confidence            999999999998887788999999999999999999988888888999999999999999999998754    5999999


Q ss_pred             CCCeeEEEecCCC-CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECC
Q 001163          585 SEGAVKRTYHGLG-KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND  663 (1134)
Q Consensus       585 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d  663 (1134)
                      ++++.+..+..+. ...+.+++|+|++.+|++++.|+.|++||+.+++.+..+..|  ...|.+++|+|+|.+|++++.|
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h--~~~v~~l~~spdg~~l~sgs~D  347 (354)
T 2pbi_B          270 RADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH--ENRVSTLRVSPDGTAFCSGSWD  347 (354)
T ss_dssp             TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC--SSCEEEEEECTTSSCEEEEETT
T ss_pred             CCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECC--CCcEEEEEECCCCCEEEEEcCC
Confidence            9998877776543 236789999999999999999999999999999998888755  6789999999999999999999


Q ss_pred             CcEEEEE
Q 001163          664 NGIKILA  670 (1134)
Q Consensus       664 g~i~iw~  670 (1134)
                      |+|++|+
T Consensus       348 ~~v~vW~  354 (354)
T 2pbi_B          348 HTLRVWA  354 (354)
T ss_dssp             SEEEEEC
T ss_pred             CCEEecC
Confidence            9999995

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6.8e-38  Score=345.51  Aligned_cols=291  Identities=18%  Similarity=0.335  Sum_probs=252.4

Q ss_pred             eEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc
Q 001163          349 VVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS  427 (1134)
Q Consensus       349 ~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  427 (1134)
                      ..+++. |.+.|++++|||+|+ ++++|+.||+|+|||+.+++.+..                   +.+|..+|.+++|+
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~~   64 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKFI   64 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEE
T ss_pred             eEEeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEEe
Confidence            345555 999999999999999 568999999999999999876653                   56799999999999


Q ss_pred             CCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC-ceeEEecCC
Q 001163          428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGH  506 (1134)
Q Consensus       428 pd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h  506 (1134)
                      |++++|++|+.|++|++||+.+++.+.   .+.+|.+.|.+++|+|+++  +|++|+.|++|++||+.++ .....+.+|
T Consensus        65 ~~~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~h  139 (304)
T 2ynn_A           65 ARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGH  139 (304)
T ss_dssp             GGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECCC
T ss_pred             CCCCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhccc
Confidence            999999999999999999999998665   6889999999999999999  8999999999999999887 455788999


Q ss_pred             CcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec-CCCCCeeEEEECc--CCCEEEEEecCCCCCeEEEEEe
Q 001163          507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-APGHSSTMMAYSA--DGARLFSCGTNKEGESYLVEWN  583 (1134)
Q Consensus       507 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~wd  583 (1134)
                      ...|.+++|+|. ++.+|++|+.|++|++||+........+. .+...+..+.|+|  ++.+|++++.|+    .|++||
T Consensus       140 ~~~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~----~i~iWd  214 (304)
T 2ynn_A          140 EHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL----TIKIWD  214 (304)
T ss_dssp             CSCEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTS----EEEEEE
T ss_pred             CCcEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCC----eEEEEe
Confidence            999999999763 34799999999999999998776665554 3446788899876  778999998644    699999


Q ss_pred             CCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCc--EEEEEE
Q 001163          584 ESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI--LLAVST  661 (1134)
Q Consensus       584 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~--~l~~~~  661 (1134)
                      +++++++..+.+|.. .+..++|+|++.+|++++.||.|++||..+++.+..+..+  ...+.+++|+|++.  ++++|+
T Consensus       215 ~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~asg~  291 (304)
T 2ynn_A          215 YQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG--LERSWCIATHPTGRKNYIASGF  291 (304)
T ss_dssp             TTTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCS--SSSEEEEEECTTCGGGCEEEEE
T ss_pred             CCCCccceeeCCCCC-CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCC--CccEEEEEECCCCCceEEEEec
Confidence            999999999999987 8999999999999999999999999999999999998755  56889999999875  577776


Q ss_pred             CCCcEEEEEccC
Q 001163          662 NDNGIKILANAD  673 (1134)
Q Consensus       662 ~dg~i~iw~~~~  673 (1134)
                      +| .+.+|++.+
T Consensus       292 ~~-g~~~~~~~~  302 (304)
T 2ynn_A          292 DN-GFTVLSLGN  302 (304)
T ss_dssp             TT-EEEEEECC-
T ss_pred             CC-ceEEEEecc
Confidence            65 466777654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=6.6e-38  Score=347.76  Aligned_cols=289  Identities=16%  Similarity=0.254  Sum_probs=258.0

Q ss_pred             cccCCCCEEEEEEcCC----CCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeE
Q 001163          414 SSDYTASVNRVMWSPD----GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVI  489 (1134)
Q Consensus       414 ~~~h~~~V~~l~~spd----~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i  489 (1134)
                      +.+|.+.|++++|+|+    +.+|++|+.|++|+|||+.+++.. ....+.+|...|.+++|++++.  ++++++.|++|
T Consensus        28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~-~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~i  104 (321)
T 3ow8_A           28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD-LQWSLEGHQLGVVSVDISHTLP--IAASSSLDAHI  104 (321)
T ss_dssp             TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECSSSS--EEEEEETTSEE
T ss_pred             cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee-eeeeeccCCCCEEEEEECCCCC--EEEEEeCCCcE
Confidence            5689999999999984    679999999999999999887532 3346889999999999999998  89999999999


Q ss_pred             EEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEE
Q 001163          490 KVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSC  569 (1134)
Q Consensus       490 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  569 (1134)
                      ++||+.+++.+..+..|...+.+++|++  ++.+|++++.|+.|++|+++.......+..+...+.+++|+|++++|+++
T Consensus       105 ~lWd~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg  182 (321)
T 3ow8_A          105 RLWDLENGKQIKSIDAGPVDAWTLAFSP--DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG  182 (321)
T ss_dssp             EEEETTTTEEEEEEECCTTCCCCEEECT--TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred             EEEECCCCCEEEEEeCCCccEEEEEECC--CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence            9999999999999999999999999865  55899999999999999999988888888888899999999999999999


Q ss_pred             ecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEE
Q 001163          570 GTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIR  649 (1134)
Q Consensus       570 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  649 (1134)
                      +.++    .|++||+.+++.+..+.+|.. .|.+++|+|++++|++++.||.|++||+++++.+..+..|  ...|.+++
T Consensus       183 ~~dg----~i~iwd~~~~~~~~~~~~h~~-~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~  255 (321)
T 3ow8_A          183 AIDG----IINIFDIATGKLLHTLEGHAM-PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH--ASWVLNVA  255 (321)
T ss_dssp             ETTS----CEEEEETTTTEEEEEECCCSS-CCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCC--SSCEEEEE
T ss_pred             cCCC----eEEEEECCCCcEEEEEcccCC-ceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCC--CCceEEEE
Confidence            8754    599999999999999998877 8999999999999999999999999999999998888755  67899999


Q ss_pred             EcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCC
Q 001163          650 FNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGM  729 (1134)
Q Consensus       650 ~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  729 (1134)
                      |+|++.+|++++.|++|++||+.++ ..+..+.+                                              
T Consensus       256 ~sp~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~----------------------------------------------  288 (321)
T 3ow8_A          256 FCPDDTHFVSSSSDKSVKVWDVGTR-TCVHTFFD----------------------------------------------  288 (321)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTT-EEEEEECC----------------------------------------------
T ss_pred             ECCCCCEEEEEeCCCcEEEEeCCCC-EEEEEEcC----------------------------------------------
Confidence            9999999999999999999999876 34433322                                              


Q ss_pred             CCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecC
Q 001163          730 SNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWP  806 (1134)
Q Consensus       730 ~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~  806 (1134)
                                                                   |...|.+++|+|+|+.|++++.||.|++||.+
T Consensus       289 ---------------------------------------------h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          289 ---------------------------------------------HQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             ---------------------------------------------CSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             ---------------------------------------------CCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence                                                         66789999999999999999999999999854

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.1e-38  Score=363.89  Aligned_cols=286  Identities=19%  Similarity=0.314  Sum_probs=260.1

Q ss_pred             cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163          414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD  493 (1134)
Q Consensus       414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd  493 (1134)
                      +.+|.++|++++|+|++++|++|+.||+|+|||+.+++...   .+.+|.+.|.+++|+|+++  +|++|+.|++|++||
T Consensus       104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd  178 (410)
T 1vyh_C          104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD  178 (410)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred             ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence            57899999999999999999999999999999999988655   6889999999999999999  899999999999999


Q ss_pred             CCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCC
Q 001163          494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK  573 (1134)
Q Consensus       494 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~  573 (1134)
                      +.+++++..+.+|...|.+++|+++  +.+|++++.|++|++||+.++.....+..|...|.++.++|+++++++++.|+
T Consensus       179 ~~~~~~~~~~~~h~~~V~~v~~~p~--~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~  256 (410)
T 1vyh_C          179 FQGFECIRTMHGHDHNVSSVSIMPN--GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ  256 (410)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECSS--SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCCCceeEEEcCCCCCEEEEEEeCC--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCC
Confidence            9999999999999999999999764  48999999999999999999988888888999999999999999999998755


Q ss_pred             CCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCC--------------------CCEEEEEeCCCeEEEEEcCCCcee
Q 001163          574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTT--------------------KNRFLAAGDEFMIKFWDMDNVNLL  633 (1134)
Q Consensus       574 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~dg~i~iwd~~~~~~~  633 (1134)
                          .|++||+.+++....+.+|.. .+.+++|+|+                    +.+|++|+.|+.|++||+.+++++
T Consensus       257 ----~v~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~  331 (410)
T 1vyh_C          257 ----TVRVWVVATKECKAELREHRH-VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL  331 (410)
T ss_dssp             ----CEEEEETTTCCEEEEECCCSS-CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred             ----eEEEEECCCCceeeEecCCCc-eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE
Confidence                499999999999999998886 8999999996                    678999999999999999999999


Q ss_pred             EEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccc
Q 001163          634 ASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVG  713 (1134)
Q Consensus       634 ~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  713 (1134)
                      ..+..|  ...|.+++|+|++++|++++.||.|++||+.++ .....+.                               
T Consensus       332 ~~~~~h--~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~-~~~~~~~-------------------------------  377 (410)
T 1vyh_C          332 MTLVGH--DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTLN-------------------------------  377 (410)
T ss_dssp             EEEECC--SSCEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEEE-------------------------------
T ss_pred             EEEECC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEEc-------------------------------
Confidence            988865  668999999999999999999999999998765 2222221                               


Q ss_pred             cCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeee
Q 001163          714 TSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILA  793 (1134)
Q Consensus       714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~  793 (1134)
                                                                                  +|...|.+++|+|++.+|++
T Consensus       378 ------------------------------------------------------------~h~~~v~~l~~~~~~~~l~s  397 (410)
T 1vyh_C          378 ------------------------------------------------------------AHEHFVTSLDFHKTAPYVVT  397 (410)
T ss_dssp             ------------------------------------------------------------CCSSCEEEEEECSSSSCEEE
T ss_pred             ------------------------------------------------------------CCCCcEEEEEEcCCCCEEEE
Confidence                                                                        26778999999999999999


Q ss_pred             eccCCeEEeeec
Q 001163          794 LASNAVHKLWKW  805 (1134)
Q Consensus       794 ~~~dg~i~vw~~  805 (1134)
                      ++.||.|++|++
T Consensus       398 gs~D~~i~vW~~  409 (410)
T 1vyh_C          398 GSVDQTVKVWEC  409 (410)
T ss_dssp             EETTSEEEEEC-
T ss_pred             EeCCCcEEEEeC
Confidence            999999999974

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=8.9e-38  Score=347.02  Aligned_cols=298  Identities=18%  Similarity=0.245  Sum_probs=255.5

Q ss_pred             EEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC
Q 001163          350 VMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP  428 (1134)
Q Consensus       350 ~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  428 (1134)
                      ..++. |.+.|++++|+|++..++++|+.|++|++||+..........+              ..+.+|...|.+++|+|
T Consensus        10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~--------------~~~~~h~~~v~~~~~s~   75 (319)
T 3frx_A           10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV--------------RSFKGHSHIVQDCTLTA   75 (319)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEE--------------EEEECCSSCEEEEEECT
T ss_pred             EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccc--------------eEEeCCcccEEEEEECC
Confidence            44554 9999999999998755889999999999999875433211111              13678999999999999


Q ss_pred             CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCc
Q 001163          429 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES  508 (1134)
Q Consensus       429 d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~  508 (1134)
                      ++++|++|+.|++|+|||+.+++.+.   .+.+|...|.+++|+|++.  +|++|+.|++|++||+. ++++..+.+|..
T Consensus        76 dg~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~  149 (319)
T 3frx_A           76 DGAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLGHND  149 (319)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECCCSS
T ss_pred             CCCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEeccCC
Confidence            99999999999999999999998665   6889999999999999999  89999999999999975 678888999999


Q ss_pred             CEEEEeccccC----CccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeC
Q 001163          509 PVYSICPHHKE----NIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE  584 (1134)
Q Consensus       509 ~v~~~~~~~~~----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~  584 (1134)
                      .|.++++.+..    ++..+++++.|+.|++||+........+..|...|.+++|+|++++|++++.|+    .|++||+
T Consensus       150 ~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg----~i~iwd~  225 (319)
T 3frx_A          150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDG----EIMLWNL  225 (319)
T ss_dssp             CEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTC----EEEEEET
T ss_pred             cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCC----eEEEEEC
Confidence            99999987643    345899999999999999998887888888999999999999999999998644    6999999


Q ss_pred             CCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecC------CCCCCcceEEEcCCCcEEE
Q 001163          585 SEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD------GGLQASPCIRFNKEGILLA  658 (1134)
Q Consensus       585 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~v~~sp~~~~l~  658 (1134)
                      .+++.+..+..+.  .+.+++|+|++.++++++.+ .+++|++..+..+..+..+      .+...+.+++|+|+|++|+
T Consensus       226 ~~~~~~~~~~~~~--~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~  302 (319)
T 3frx_A          226 AAKKAMYTLSAQD--EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF  302 (319)
T ss_dssp             TTTEEEEEEECCS--CEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEE
T ss_pred             CCCcEEEEecCCC--cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEE
Confidence            9999999887653  79999999999999888754 5999999988877776532      1234678999999999999


Q ss_pred             EEECCCcEEEEEccCC
Q 001163          659 VSTNDNGIKILANADG  674 (1134)
Q Consensus       659 ~~~~dg~i~iw~~~~~  674 (1134)
                      +|+.||.|++|++.++
T Consensus       303 sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          303 AGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             EEETTSCEEEEEEEEC
T ss_pred             EeecCceEEEEEEeec
Confidence            9999999999998764

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2e-37  Score=347.82  Aligned_cols=286  Identities=16%  Similarity=0.228  Sum_probs=256.5

Q ss_pred             cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163          414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD  493 (1134)
Q Consensus       414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd  493 (1134)
                      +.+|.+.|++++|+||+++|++|+.||+|+|||+.+++.+.   .+..|...|.+++|+|+++  +|++|+.|+.|++||
T Consensus        51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw~  125 (340)
T 1got_B           51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN  125 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEEE
T ss_pred             ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEEE
Confidence            68999999999999999999999999999999999987655   6788999999999999999  899999999999999


Q ss_pred             CCCC----ceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEE
Q 001163          494 AVTG----TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSC  569 (1134)
Q Consensus       494 ~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  569 (1134)
                      +.++    +....+.+|.+.|.++.|.++   ..+++++.|++|++||+.+......+..|...|.+++|+|++++++++
T Consensus       126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg  202 (340)
T 1got_B          126 LKTREGNVRVSRELAGHTGYLSCCRFLDD---NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG  202 (340)
T ss_dssp             TTTCSBSCEEEEEEECCSSCEEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CccCCCcceeEEEecCCCccEEEEEECCC---CcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence            9876    356678899999999998653   358999999999999999988888888899999999999999999999


Q ss_pred             ecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEE
Q 001163          570 GTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIR  649 (1134)
Q Consensus       570 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  649 (1134)
                      +.|+    .|++||++++..+..+.+|.. .|.+++|+|++++|++++.||.|++||+++++.+..+..+.....|.+++
T Consensus       203 ~~d~----~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~  277 (340)
T 1got_B          203 ACDA----SAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS  277 (340)
T ss_dssp             ETTS----CEEEEETTTCSEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred             eCCC----cEEEEECCCCeeEEEEcCCcC-CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEE
Confidence            8755    599999999999999999887 89999999999999999999999999999999888876555556799999


Q ss_pred             EcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCC
Q 001163          650 FNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGM  729 (1134)
Q Consensus       650 ~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  729 (1134)
                      |+|+|++|++|+.||.|++||+.++ .....+.                                               
T Consensus       278 ~s~~g~~l~~g~~d~~i~vwd~~~~-~~~~~~~-----------------------------------------------  309 (340)
T 1got_B          278 FSKSGRLLLAGYDDFNCNVWDALKA-DRAGVLA-----------------------------------------------  309 (340)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTC-CEEEEEE-----------------------------------------------
T ss_pred             ECCCCCEEEEECCCCeEEEEEcccC-cEeeEee-----------------------------------------------
Confidence            9999999999999999999998766 2222222                                               


Q ss_pred             CCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeee
Q 001163          730 SNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWK  804 (1134)
Q Consensus       730 ~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~  804 (1134)
                                                                  +|...|.+++|+|+|.+|++++.|+.|+||+
T Consensus       310 --------------------------------------------~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          310 --------------------------------------------GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             --------------------------------------------CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             --------------------------------------------cCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence                                                        2778899999999999999999999999995

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.2e-38  Score=359.74  Aligned_cols=312  Identities=16%  Similarity=0.202  Sum_probs=231.5

Q ss_pred             ccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeecc------CCeEEeeecCCCCCCcccc
Q 001163          742 KIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALAS------NAVHKLWKWPRNERNSTGK  815 (1134)
Q Consensus       742 ~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~------dg~i~vw~~~~~~~~~~~~  815 (1134)
                      .+.+..+.....|++....           ...|...|.+++|+|||++|++++.      |+.+++|+.          
T Consensus        19 ~~~~~g~~~~~~w~~p~~~-----------p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~----------   77 (357)
T 4g56_B           19 YFQSNGSSKGSAWGRPVTA-----------PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKD----------   77 (357)
T ss_dssp             --------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESS----------
T ss_pred             EEecCCCccccccCCCCCC-----------cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEEC----------
Confidence            3444555677888765211           1248899999999999999999998      455555543          


Q ss_pred             cccCCCCcccCCCCCcccccC-CCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEE----EecCCCCCeEEE
Q 001163          816 ATTNQAPQLWQPPSGILMTND-ISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMT----TFMPPPPAATFL  890 (1134)
Q Consensus       816 ~~~~~~~~~~d~~~~~~~~~~-~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~----~~~~~~~~v~~l  890 (1134)
                                  .++...... ....+|...|.+++|+|++++++++.||+|+|||+.+++...    ...+|...|+++
T Consensus        78 ------------~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v  145 (357)
T 4g56_B           78 ------------PEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTL  145 (357)
T ss_dssp             ------------CC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEE
T ss_pred             ------------CCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEE
Confidence                        333221111 111137889999999999988776669999999998876543    345789999999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCC-EEEEEeCCCcEEEEECCCCccccceeeee
Q 001163          891 AFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLN-VLVSSGADSQLCVWSTDGWEKQASKFLTI  969 (1134)
Q Consensus       891 ~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~  969 (1134)
                      +|+| ++++|++|+.|+.|++||+.+++.+..+.+|.+.|++++|++++. ++++++.|++|++||+.+++....  +..
T Consensus       146 ~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~--~~~  222 (357)
T 4g56_B          146 SVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR--IDF  222 (357)
T ss_dssp             EECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB--CCC
T ss_pred             EECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee--eee
Confidence            9999 899999999999999999999999999999999999999999885 789999999999999988663321  111


Q ss_pred             cCCCCCCCCCceEEEEcCCC-CEEEE-EeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCC-CEEEEEecCCcEEE
Q 001163          970 PNGRTASALADTRVQFHLDQ-THLLA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDS-QSIYVAFEEGSVGV 1046 (1134)
Q Consensus       970 ~~~~~~~~~~v~~l~fs~dg-~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~s~Dg~i~v 1046 (1134)
                       ..+.   ..+.+++|+|++ .+|++ +.|+.|++||+.+++++..+.  +|...|++++|+|++ ++|++++.|++|+|
T Consensus       223 -~~~~---~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~~lasgs~D~~i~i  296 (357)
T 4g56_B          223 -CASD---TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA--VHSQNITGLAYSYHSSPFLASISEDCTVAV  296 (357)
T ss_dssp             -TTCC---SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC--CCSSCEEEEEECSSSSCCEEEEETTSCEEE
T ss_pred             -cccc---ccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe--ccceeEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence             1111   468999999985 56776 478999999999999988886  789999999999998 57999999999999


Q ss_pred             eecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCCCC
Q 001163         1047 LTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAE 1105 (1134)
Q Consensus      1047 wd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~ 1105 (1134)
                      ||+.+++.+..+        +|.+.|+.+  +|+|.|+.+|++++.||+|++|+++...
T Consensus       297 wd~~~~~~~~~~--------~H~~~V~~v--afsP~d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          297 LDADFSEVFRDL--------SHRDFVTGV--AWSPLDHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             ECTTSCEEEEEC--------CCSSCEEEE--EECSSSTTEEEEEETTSCEEEEECC---
T ss_pred             EECCCCcEeEEC--------CCCCCEEEE--EEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence            999999876443        488888877  8899889999999999999999997644

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.2e-38  Score=360.14  Aligned_cols=302  Identities=16%  Similarity=0.270  Sum_probs=260.6

Q ss_pred             ceeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEE
Q 001163          347 KTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM  425 (1134)
Q Consensus       347 ~~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  425 (1134)
                      ..+.+++. |.+.|++++|+|+|++ |++|+.||+|+|||+.+++....                   +.+|...|.+++
T Consensus        56 ~~~~~~l~gH~~~V~~~~~sp~~~~-l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h~~~v~~~~  115 (380)
T 3iz6_a           56 LVCCRTLQGHSGKVYSLDWTPEKNW-IVSASQDGRLIVWNALTSQKTHA-------------------IKLHCPWVMECA  115 (380)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEEETTTTEEEEE-------------------EECCCTTCCCCE
T ss_pred             eEEeecccccccEEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCccceE-------------------EecCCCCEEEEE
Confidence            44556665 9999999999999995 68999999999999999876653                   567999999999


Q ss_pred             EcCCCCEEEEEeCCCEEEEEEccCCce----eeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeE
Q 001163          426 WSPDGTLFGVAYSKHIVHLYTYHGGDE----LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY  501 (1134)
Q Consensus       426 ~spd~~~las~s~dg~v~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~  501 (1134)
                      |+|+|++||+|+.|+.|++||+.+...    ......+.+|.+.|.+++|+|++.. .|++|+.|++|++||+.+++.+.
T Consensus       116 ~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~  194 (380)
T 3iz6_a          116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRIS  194 (380)
T ss_dssp             ECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEE
T ss_pred             ECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEE
Confidence            999999999999999999999975421    1122357899999999999998654 69999999999999999999988


Q ss_pred             Ee-----cCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCC-CCceeeecCCCCCeeEEEECcCCCEEEEEecCCCC
Q 001163          502 IF-----EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN-LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG  575 (1134)
Q Consensus       502 ~~-----~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~  575 (1134)
                      .+     .+|...|.++++++ .++.++++|+.|++|++||++. ......+..|...|.+++|+|++++|++++.|+  
T Consensus       195 ~~~~~~~~~h~~~v~~~~~~~-~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~--  271 (380)
T 3iz6_a          195 IFGSEFPSGHTADVLSLSINS-LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDG--  271 (380)
T ss_dssp             EECCCSSSSCCSCEEEEEECS-SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSS--
T ss_pred             EeecccCCCCccCeEEEEeec-CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCC--
Confidence            77     67999999999865 3458999999999999999984 456667888889999999999999999998754  


Q ss_pred             CeEEEEEeCCCCeeEEEecCCCC------CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEec--CCCCCCcce
Q 001163          576 ESYLVEWNESEGAVKRTYHGLGK------RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA--DGGLQASPC  647 (1134)
Q Consensus       576 ~~~i~~wd~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~  647 (1134)
                        .|++||+++++.+..+..+..      ..+.+++|+|+++++++|+.||.|++||..+++.+..+..  .+|...|.+
T Consensus       272 --~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~  349 (380)
T 3iz6_a          272 --TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISC  349 (380)
T ss_dssp             --CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCE
T ss_pred             --eEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEE
Confidence              599999999999888866532      1378999999999999999999999999999998877732  345778999


Q ss_pred             EEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163          648 IRFNKEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       648 v~~sp~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      ++|+|+|.+|++|+.||+|++|++...
T Consensus       350 l~~s~dg~~l~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          350 LGLSSDGSALCTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             EEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred             EEECCCCCEEEEeeCCCCEEEEecCCC
Confidence            999999999999999999999998765

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4.8e-38  Score=354.69  Aligned_cols=293  Identities=13%  Similarity=0.167  Sum_probs=237.9

Q ss_pred             ecCCCeeEEEEcCCCCeEEEEEeC------CCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc
Q 001163          354 NQGSAVKSMDFHPVQQILLVVGTN------MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS  427 (1134)
Q Consensus       354 ~h~~~V~~v~fsp~g~~lla~gs~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  427 (1134)
                      .|...|++|+|||||+ +||+|+.      |+.|++|+..++.......               ....+|...|.+++|+
T Consensus        40 ~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~---------------~~~~~~~~~V~~~~~s  103 (357)
T 4g56_B           40 CMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESLC---------------TAGVQTEAGVTDVAWV  103 (357)
T ss_dssp             CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGGC---------------SEEEECSSCEEEEEEE
T ss_pred             cccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeEe---------------cccCCCCCCEEEEEEc
Confidence            4899999999999999 5688887      6788899887765432210               1135789999999999


Q ss_pred             CCCCEEEEEeCCCEEEEEEccCCceeee-eeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCC
Q 001163          428 PDGTLFGVAYSKHIVHLYTYHGGDELRN-HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH  506 (1134)
Q Consensus       428 pd~~~las~s~dg~v~iwd~~~~~~~~~-~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h  506 (1134)
                      |++++| +++.||+|+|||+.+++.... .....+|...|++++|+|+++  +|++|+.|++|++||+.+++++..+.+|
T Consensus       104 ~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~~h  180 (357)
T 4g56_B          104 SEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYNAH  180 (357)
T ss_dssp             TTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             CCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCC
Confidence            998654 677899999999998875432 223568999999999999999  8999999999999999999999999999


Q ss_pred             CcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec--CCCCCeeEEEECcCC-CEEEEEecCCCCCeEEEEEe
Q 001163          507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD--APGHSSTMMAYSADG-ARLFSCGTNKEGESYLVEWN  583 (1134)
Q Consensus       507 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd  583 (1134)
                      ...|.+++|+++.+ .++++++.|+.|++||+++.+....+.  .+...+.+++|+|++ .++++++.++    .|++||
T Consensus       181 ~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~----~i~~wd  255 (357)
T 4g56_B          181 SSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG----NVSLVN  255 (357)
T ss_dssp             SSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS----CEEEEE
T ss_pred             CCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeeccc----ceeEEE
Confidence            99999999976553 578999999999999998877665544  345579999999985 5677776543    599999


Q ss_pred             CCCCeeEEEecCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcC-CCcEEEEEE
Q 001163          584 ESEGAVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK-EGILLAVST  661 (1134)
Q Consensus       584 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~~~~  661 (1134)
                      +++++.+..+.++.. .|.+++|+|++ ++|++++.||+|+|||+++++.+..+   +|...|++++|+| ++.+|++++
T Consensus       256 ~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~---~H~~~V~~vafsP~d~~~l~s~s  331 (357)
T 4g56_B          256 IKNPDSAQTSAVHSQ-NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL---SHRDFVTGVAWSPLDHSKFTTVG  331 (357)
T ss_dssp             SSCGGGCEEECCCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC---CCSSCEEEEEECSSSTTEEEEEE
T ss_pred             CCCCcEeEEEeccce-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC---CCCCCEEEEEEeCCCCCEEEEEc
Confidence            999999999999887 89999999987 57889999999999999999887665   4577899999998 899999999


Q ss_pred             CCCcEEEEEccCC
Q 001163          662 NDNGIKILANADG  674 (1134)
Q Consensus       662 ~dg~i~iw~~~~~  674 (1134)
                      .||+|++|++...
T Consensus       332 ~Dg~v~iW~~~~~  344 (357)
T 4g56_B          332 WDHKVLHHHLPSE  344 (357)
T ss_dssp             TTSCEEEEECC--
T ss_pred             CCCeEEEEECCCC
Confidence            9999999999765

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.3e-37  Score=346.66  Aligned_cols=302  Identities=17%  Similarity=0.256  Sum_probs=248.3

Q ss_pred             eeEEEee-cCC-CeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEE
Q 001163          348 TVVMTLN-QGS-AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM  425 (1134)
Q Consensus       348 ~~~~~~~-h~~-~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  425 (1134)
                      .++.++. |.. .|++++|||+|+ +||+|+.|++|+|||+.++......                ....+|...|.+++
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~~----------------~~~~~h~~~v~~~~   68 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICKS----------------VLSEGHQRTVRKVA   68 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEEE----------------EECSSCSSCEEEEE
T ss_pred             EEeeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceeee----------------eeccccCCcEEEEE
Confidence            3455665 776 999999999999 5689999999999999877543211                12468999999999


Q ss_pred             EcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC---ceeEE
Q 001163          426 WSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG---TKQYI  502 (1134)
Q Consensus       426 ~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~---~~~~~  502 (1134)
                      |+|+|++||+|+.|++|+|||+.++.. .....+.+|...|.+++|+|+++  +|++|+.|++|++||+.++   +++..
T Consensus        69 ~sp~g~~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~  145 (345)
T 3fm0_A           69 WSPCGNYLASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVSV  145 (345)
T ss_dssp             ECTTSSEEEEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEEE
T ss_pred             ECCCCCEEEEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEEE
Confidence            999999999999999999999987652 23346889999999999999999  8999999999999999876   34667


Q ss_pred             ecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCc--eeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEE
Q 001163          503 FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS--RVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLV  580 (1134)
Q Consensus       503 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~  580 (1134)
                      +.+|...|.+++|+++  +.+|++++.|+.|++||......  ...+..|...|.+++|+|+|++|++++.|+    .|+
T Consensus       146 ~~~h~~~v~~~~~~p~--~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~----~v~  219 (345)
T 3fm0_A          146 LNSHTQDVKHVVWHPS--QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDR----TVR  219 (345)
T ss_dssp             ECCCCSCEEEEEECSS--SSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS----CEE
T ss_pred             ecCcCCCeEEEEECCC--CCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCC----eEE
Confidence            8899999999999765  47999999999999999886643  356777888999999999999999998755    599


Q ss_pred             EEeCCC---------------CeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc----eeEEE---ec
Q 001163          581 EWNESE---------------GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN----LLASI---DA  638 (1134)
Q Consensus       581 ~wd~~~---------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~---~~  638 (1134)
                      +||...               .+++..+.+.+...|.+++|+|++..|++++.|+.|++|+...+.    +...+   ..
T Consensus       220 iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~  299 (345)
T 3fm0_A          220 IWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLH  299 (345)
T ss_dssp             EEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEET
T ss_pred             EeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeec
Confidence            999632               234556666555589999999999999999999999999987643    11111   12


Q ss_pred             CCCCCCcceEEEcCCC-cEEEEEECCCcEEEEEccCCc
Q 001163          639 DGGLQASPCIRFNKEG-ILLAVSTNDNGIKILANADGI  675 (1134)
Q Consensus       639 ~~~~~~v~~v~~sp~~-~~l~~~~~dg~i~iw~~~~~~  675 (1134)
                      .+|...|++++|+|++ .+|++++.||+|++|++.+..
T Consensus       300 ~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~  337 (345)
T 3fm0_A          300 QAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE  337 (345)
T ss_dssp             TSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred             ccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence            3567789999999987 599999999999999998773

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.1e-37  Score=348.45  Aligned_cols=297  Identities=13%  Similarity=0.122  Sum_probs=238.0

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCc-cccccccccCCCCEEEEEEcCCCCEE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSM-PLQASLSSDYTASVNRVMWSPDGTLF  433 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~V~~l~~spd~~~l  433 (1134)
                      |...|.+++|||||+ +|++++ |+++++||....         +|+...... .........|...|.+++|+||+ .|
T Consensus        29 ~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l   96 (344)
T 4gqb_B           29 MERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSLW---------LFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GI   96 (344)
T ss_dssp             CCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEEE---------EESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EE
T ss_pred             ccCCEEEEEECCCCC-EEEEEe-CCceEEeeceee---------eeccccccCCcceeeeeeccCCCEEEEEEeCCC-eE
Confidence            566799999999999 556666 778888874211         111100000 00011123467889999999985 68


Q ss_pred             EEEeCCCEEEEEEccCCceeeee-eeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEE
Q 001163          434 GVAYSKHIVHLYTYHGGDELRNH-LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS  512 (1134)
Q Consensus       434 as~s~dg~v~iwd~~~~~~~~~~-~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~  512 (1134)
                      ++|+.||+|+|||+.+++.+... ..+.+|.+.|++++|+|+|+  +|++|+.|++|++||+.+++++..+.+|...|.+
T Consensus        97 ~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~  174 (344)
T 4gqb_B           97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTC  174 (344)
T ss_dssp             EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEE
Confidence            89999999999999998765432 24668999999999999999  8999999999999999999999999999999999


Q ss_pred             EeccccCCccEEEEecCCCcEEEEecCCCCceeeecC--CCCCeeEEEECcCC-CEEEEEecCCCCCeEEEEEeCCCCee
Q 001163          513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA--PGHSSTMMAYSADG-ARLFSCGTNKEGESYLVEWNESEGAV  589 (1134)
Q Consensus       513 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~  589 (1134)
                      ++|+++.. .++++++.|++|++||+++.+....+..  +...+.+++|+|++ +++++++.|    +.|++||++++++
T Consensus       175 ~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d----g~v~~wd~~~~~~  249 (344)
T 4gqb_B          175 VAASPHKD-SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN----GTVSLVDTKSTSC  249 (344)
T ss_dssp             EEECSSCT-TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETT----SEEEEEESCC--C
T ss_pred             EEecCCCC-CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccC----CcEEEEECCCCcE
Confidence            99976543 5889999999999999998887766543  44578999999954 577777654    4699999999999


Q ss_pred             EEEecCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCc-EEEEEECCCcEE
Q 001163          590 KRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI-LLAVSTNDNGIK  667 (1134)
Q Consensus       590 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~~~~~dg~i~  667 (1134)
                      +..+.+|.. .|.+++|+|++ ++|++++.|++|++||+.+++.+. +.  +|...|++++|+|++. +|++++.||+|+
T Consensus       250 ~~~~~~h~~-~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~--~H~~~V~~v~~sp~~~~llas~s~D~~v~  325 (344)
T 4gqb_B          250 VLSSAVHSQ-CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ--AHRDFVRDATWSPLNHSLLTTVGWDHQVV  325 (344)
T ss_dssp             CEEEECCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC--CCSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred             EEEEcCCCC-CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec--CCCCCEEEEEEeCCCCeEEEEEcCCCeEE
Confidence            999999987 89999999998 578999999999999999987654 33  5577999999999885 677999999999


Q ss_pred             EEEccCC
Q 001163          668 ILANADG  674 (1134)
Q Consensus       668 iw~~~~~  674 (1134)
                      +|++.+.
T Consensus       326 ~w~v~~~  332 (344)
T 4gqb_B          326 HHVVPTE  332 (344)
T ss_dssp             EEECCC-
T ss_pred             EEECCCC
Confidence            9998765

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.6e-38  Score=352.28  Aligned_cols=295  Identities=15%  Similarity=0.159  Sum_probs=230.9

Q ss_pred             ccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCc-ccccCCCCCCCCCCeeEEEEcC
Q 001163          775 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGI-LMTNDISDTNPEDAVPCFALSK  853 (1134)
Q Consensus       775 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~h~~~v~~v~~s~  853 (1134)
                      +...|.+++|+|||++|++++ |+++++|+...               .+|+..... ..........+...|.+++|+|
T Consensus        29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~   92 (344)
T 4gqb_B           29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSL---------------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG   92 (344)
T ss_dssp             CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEE---------------EEESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred             ccCCEEEEEECCCCCEEEEEe-CCceEEeecee---------------eeeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence            567899999999999888766 77788886331               111111100 0000000011567899999999


Q ss_pred             CCCeEEEee-CCeEEEEEccCCeEEEE----ecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccC
Q 001163          854 NDSYVMSAS-GGKISLFNMMTFKTMTT----FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQK  928 (1134)
Q Consensus       854 dg~~la~~s-dg~i~lwd~~~~~~~~~----~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~  928 (1134)
                      |+. |++++ ||+|+|||+.+++.+..    +.+|...|++++|+| ++++|++|+.|++|++||+.+++++..+.+|.+
T Consensus        93 d~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~  170 (344)
T 4gqb_B           93 ERG-ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA  170 (344)
T ss_dssp             TTE-EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             CCe-EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence            975 55565 99999999998876544    448999999999999 899999999999999999999999999999999


Q ss_pred             ceEEEEEeeCCC-EEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCC-CCEEEE-EeeceEEEEeC
Q 001163          929 RITGLAFSNTLN-VLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLD-QTHLLA-VHETQIAIYEA 1005 (1134)
Q Consensus       929 ~V~~l~~s~d~~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d-g~~l~~-~~d~~i~iwd~ 1005 (1134)
                      .|++++|++++. +|++++.|++|++||+.+++....  +.. ..+.   ..+.+++|+|+ +++|++ +.|++|++||+
T Consensus       171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~~-~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~  244 (344)
T 4gqb_B          171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ--IGC-SAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLVDT  244 (344)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE--CC-----C---CCEEEEEECSSCTTEEEEEETTSEEEEEES
T ss_pred             ceEEEEecCCCCCceeeeccccccccccccccceeee--eec-ceee---ccceeeeecCCCCcceEEeccCCcEEEEEC
Confidence            999999999984 789999999999999998763221  111 1111   35889999995 567777 47899999999


Q ss_pred             CCcccceeeccCCCccCEEEEEEccCC-CEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCC
Q 001163         1006 PKLECLKQFVPREASGPITHATYSCDS-QSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDP 1084 (1134)
Q Consensus      1006 ~~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~ 1084 (1134)
                      .+++++..+.  +|...|++++|+||| ++|++|+.|++|+|||+.+++.+. +       .+|.+.|+++  +|+|++.
T Consensus       245 ~~~~~~~~~~--~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~-------~~H~~~V~~v--~~sp~~~  312 (344)
T 4gqb_B          245 KSTSCVLSSA--VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-S-------QAHRDFVRDA--TWSPLNH  312 (344)
T ss_dssp             CC--CCEEEE--CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-E-------CCCSSCEEEE--EECSSST
T ss_pred             CCCcEEEEEc--CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-E-------cCCCCCEEEE--EEeCCCC
Confidence            9999998887  899999999999998 579999999999999999987643 2       2688999887  8899666


Q ss_pred             CEEEEEecCCcEEEEeCCCCC
Q 001163         1085 NQFALGLTDGGVYIIEPLEAE 1105 (1134)
Q Consensus      1085 ~~l~s~~~Dg~v~vW~~~~~~ 1105 (1134)
                      .+|+++|.||+|++|+++...
T Consensus       313 ~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          313 SLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             TEEEEEETTSCEEEEECCC--
T ss_pred             eEEEEEcCCCeEEEEECCCCC
Confidence            788899999999999998643

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-37  Score=357.05  Aligned_cols=307  Identities=15%  Similarity=0.225  Sum_probs=250.3

Q ss_pred             eeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEec----CCccceeeeceeeeeccccCcccc-ccccccCCCCEE
Q 001163          348 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEV----GSRERIAVKSFKVWELGACSMPLQ-ASLSSDYTASVN  422 (1134)
Q Consensus       348 ~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~V~  422 (1134)
                      ..+....|.+.|++++|+|+|+.++|+|+.||.|+|||+    .+++.+..... ...+.   .++. .....+|.+.|+
T Consensus        37 ~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~v~  112 (425)
T 1r5m_A           37 KILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTI-IAELR---HPFALSASSGKTTNQVT  112 (425)
T ss_dssp             EECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEE-EEEEE---CCCCCC------CBCEE
T ss_pred             hheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccc-ccccc---ccccccccccCCCCceE
Confidence            334455588999999999999955689999999999999    88773110000 00000   0000 001234788999


Q ss_pred             EEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEE
Q 001163          423 RVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI  502 (1134)
Q Consensus       423 ~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~  502 (1134)
                      +++|+|++++|++|+.||.|++|| .+++.+.   .+.+|...|.+++|+|+++  +|++++.|+.|++||+.+++.+..
T Consensus       113 ~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~  186 (425)
T 1r5m_A          113 CLAWSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVMQH  186 (425)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEEEE
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEEE
Confidence            999999999999999999999999 4555444   5788999999999999999  899999999999999999999999


Q ss_pred             ecCCCcC---------------EEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEE
Q 001163          503 FEGHESP---------------VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLF  567 (1134)
Q Consensus       503 ~~~h~~~---------------v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  567 (1134)
                      +..+...               +.+++|++.   ..+++++.|+.|++||+........+..+...|.+++|+|++++++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  263 (425)
T 1r5m_A          187 FELKETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLL  263 (425)
T ss_dssp             ECCC---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEE
T ss_pred             eeccccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEE
Confidence            9888777               888888654   4689999999999999999888888888888999999999999999


Q ss_pred             EEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcce
Q 001163          568 SCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPC  647 (1134)
Q Consensus       568 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  647 (1134)
                      +++.++    .|++||+.+++.+..+..|.. .+.+++|+|++ .+++++.||.|++||+.+++.+..+..+  ...+.+
T Consensus       264 ~~~~d~----~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~i~~  335 (425)
T 1r5m_A          264 SASDDG----TLRIWHGGNGNSQNCFYGHSQ-SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVD--GVPIFA  335 (425)
T ss_dssp             EEETTS----CEEEECSSSBSCSEEECCCSS-CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECT--TCCEEE
T ss_pred             EEcCCC----EEEEEECCCCccceEecCCCc-cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccC--CccEEE
Confidence            998654    599999999999999988776 89999999999 9999999999999999999999888865  568999


Q ss_pred             EEEcCCCcEEEEEECCCcEEEEEccCCc
Q 001163          648 IRFNKEGILLAVSTNDNGIKILANADGI  675 (1134)
Q Consensus       648 v~~sp~~~~l~~~~~dg~i~iw~~~~~~  675 (1134)
                      ++|+|++++|++++.||.|++|++.++.
T Consensus       336 ~~~s~~~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          336 GRISQDGQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred             EEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence            9999999999999999999999998763

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.5e-36  Score=334.74  Aligned_cols=255  Identities=20%  Similarity=0.306  Sum_probs=226.8

Q ss_pred             ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEE
Q 001163          413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW  492 (1134)
Q Consensus       413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  492 (1134)
                      .+.+|.+.|++++|+|++++|++|+.||+|++||+.++..+.   .+.+|..+|.+++|+|+++  +|++|+.|++|++|
T Consensus         8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~vw   82 (304)
T 2ynn_A            8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVF   82 (304)
T ss_dssp             EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEE
T ss_pred             eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEEE
Confidence            367899999999999999999999999999999999988665   6788999999999999999  89999999999999


Q ss_pred             ECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCc-eeeecCCCCCeeEEEECc-CCCEEEEEe
Q 001163          493 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS-RVDYDAPGHSSTMMAYSA-DGARLFSCG  570 (1134)
Q Consensus       493 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~-~~~~l~~~~  570 (1134)
                      |+.+++++..+.+|...|.+++|+++  +.+|++|+.|++|++||++.... ...+..|...|.+++|+| ++..+++++
T Consensus        83 d~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs  160 (304)
T 2ynn_A           83 NYNTGEKVVDFEAHPDYIRSIAVHPT--KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC  160 (304)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSS--SSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred             ECCCCcEEEEEeCCCCcEEEEEEcCC--CCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence            99999999999999999999999764  48999999999999999987643 455778888999999999 678999998


Q ss_pred             cCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcC--CCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceE
Q 001163          571 TNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT--TKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCI  648 (1134)
Q Consensus       571 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v  648 (1134)
                      .|+    .|++||+.++.....+..++...+..+.|+|  ++.+|++++.|+.|++||+++++++..+..|  ...|.++
T Consensus       161 ~D~----~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h--~~~v~~~  234 (304)
T 2ynn_A          161 LDR----TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH--MSNVSFA  234 (304)
T ss_dssp             TTS----EEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECC--SSCEEEE
T ss_pred             CCC----eEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCC--CCCEEEE
Confidence            654    6999999988877777666555888899986  6789999999999999999999999999865  6689999


Q ss_pred             EEcCCCcEEEEEECCCcEEEEEccCCceeEEEe
Q 001163          649 RFNKEGILLAVSTNDNGIKILANADGIRLLRTV  681 (1134)
Q Consensus       649 ~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  681 (1134)
                      +|+|++.+|++++.||+|++||..++ ...+.+
T Consensus       235 ~~~p~~~~l~s~s~Dg~i~iWd~~~~-~~~~~~  266 (304)
T 2ynn_A          235 VFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTL  266 (304)
T ss_dssp             EECSSSSEEEEEETTSCEEEEETTTC-CEEEEE
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCC-ceeeec
Confidence            99999999999999999999999876 344433

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.5e-36  Score=341.24  Aligned_cols=211  Identities=16%  Similarity=0.239  Sum_probs=177.2

Q ss_pred             cccCCC-CEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEE
Q 001163          414 SSDYTA-SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW  492 (1134)
Q Consensus       414 ~~~h~~-~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  492 (1134)
                      +.+|.. .|.+++|+|+|++||+|+.|++|+|||+.++..........+|...|.+++|+|+++  +|++|+.|++|++|
T Consensus        11 ~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~--~l~s~s~D~~v~iw   88 (345)
T 3fm0_A           11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN--YLASASFDATTCIW   88 (345)
T ss_dssp             ECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred             ecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC--EEEEEECCCcEEEE
Confidence            578887 999999999999999999999999999998865433333578999999999999999  89999999999999


Q ss_pred             ECCCC--ceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEe
Q 001163          493 DAVTG--TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCG  570 (1134)
Q Consensus       493 d~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  570 (1134)
                      |+.++  +++..+.+|...|.+++|++  ++++|++++.|++|++||+......                          
T Consensus        89 ~~~~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~s~D~~v~iwd~~~~~~~--------------------------  140 (345)
T 3fm0_A           89 KKNQDDFECVTTLEGHENEVKSVAWAP--SGNLLATCSRDKSVWVWEVDEEDEY--------------------------  140 (345)
T ss_dssp             EECCC-EEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEEECTTSCE--------------------------
T ss_pred             EccCCCeEEEEEccCCCCCceEEEEeC--CCCEEEEEECCCeEEEEECCCCCCe--------------------------
Confidence            98876  46788999999999999965  4589999999999999998642110                          


Q ss_pred             cCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEE
Q 001163          571 TNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRF  650 (1134)
Q Consensus       571 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  650 (1134)
                                       ..+..+.+|.. .|.+++|+|++++|++++.|+.|++||..+++........+|...|.+++|
T Consensus       141 -----------------~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~  202 (345)
T 3fm0_A          141 -----------------ECVSVLNSHTQ-DVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAF  202 (345)
T ss_dssp             -----------------EEEEEECCCCS-CEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEE
T ss_pred             -----------------EEEEEecCcCC-CeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEE
Confidence                             11223344554 789999999999999999999999999988865543333455779999999


Q ss_pred             cCCCcEEEEEECCCcEEEEEcc
Q 001163          651 NKEGILLAVSTNDNGIKILANA  672 (1134)
Q Consensus       651 sp~~~~l~~~~~dg~i~iw~~~  672 (1134)
                      +|+|++|++++.||+|++|+..
T Consensus       203 sp~g~~l~s~s~D~~v~iW~~~  224 (345)
T 3fm0_A          203 DPSGQRLASCSDDRTVRIWRQY  224 (345)
T ss_dssp             CTTSSEEEEEETTSCEEEEEEE
T ss_pred             CCCCCEEEEEeCCCeEEEeccc
Confidence            9999999999999999999864

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.5e-36  Score=340.49  Aligned_cols=287  Identities=15%  Similarity=0.195  Sum_probs=254.4

Q ss_pred             cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163          414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD  493 (1134)
Q Consensus       414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd  493 (1134)
                      +.+|.+.|++++|+||+++||+|+.||+|+|||..+++...   .+..|...|.+++|+|++.  ++++|+.|+.+++|+
T Consensus        60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~~  134 (354)
T 2pbi_B           60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVYP  134 (354)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEEE
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEEE
Confidence            67899999999999999999999999999999999887554   5778999999999999999  899999999999999


Q ss_pred             CCCC------ceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECc--CCCE
Q 001163          494 AVTG------TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSA--DGAR  565 (1134)
Q Consensus       494 ~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~  565 (1134)
                      +...      .....+.+|...|.+++|+++  +..|++++.|++|++||+++.+....+..|...|.+++++|  ++++
T Consensus       135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~  212 (354)
T 2pbi_B          135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNS--DMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT  212 (354)
T ss_dssp             CCCCTTCCSGGGCEEEEECSSCEEEEEECSS--SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred             EeccccccccccceeeeccCCcEEEEEEeCC--CCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence            8654      345677889999999999654  47899999999999999999988888889999999999987  5789


Q ss_pred             EEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCc
Q 001163          566 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQAS  645 (1134)
Q Consensus       566 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v  645 (1134)
                      +++++.|+    .|++||+++++.+..+.+|.. .|.+++|+|++++|++++.|++|++||+++++.+..+..+.....+
T Consensus       213 l~sgs~Dg----~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~  287 (354)
T 2pbi_B          213 FVSGGCDK----KAMVWDMRSGQCVQAFETHES-DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGA  287 (354)
T ss_dssp             EEEEETTS----CEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred             EEEEeCCC----eEEEEECCCCcEEEEecCCCC-CeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccce
Confidence            99998755    499999999999999998887 8999999999999999999999999999999888877665555578


Q ss_pred             ceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCccccc
Q 001163          646 PCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAA  725 (1134)
Q Consensus       646 ~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  725 (1134)
                      .+++|+|++.+|++++.|+.|++||+.++. .+..+.                                           
T Consensus       288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~-~~~~l~-------------------------------------------  323 (354)
T 2pbi_B          288 SSVDFSLSGRLLFAGYNDYTINVWDVLKGS-RVSILF-------------------------------------------  323 (354)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCS-EEEEEC-------------------------------------------
T ss_pred             eEEEEeCCCCEEEEEECCCcEEEEECCCCc-eEEEEE-------------------------------------------
Confidence            899999999999999999999999987762 222221                                           


Q ss_pred             ccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeee
Q 001163          726 MVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWK  804 (1134)
Q Consensus       726 ~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~  804 (1134)
                                                                      +|...|.+++|+|+|++|++++.|+.++||+
T Consensus       324 ------------------------------------------------~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          324 ------------------------------------------------GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             ------------------------------------------------CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             ------------------------------------------------CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence                                                            2778899999999999999999999999994

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=9.6e-36  Score=330.38  Aligned_cols=290  Identities=18%  Similarity=0.302  Sum_probs=253.7

Q ss_pred             EEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC
Q 001163          350 VMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP  428 (1134)
Q Consensus       350 ~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  428 (1134)
                      ..++. |...|++++|+|+|+ ++++|+.||.|+|||+.+++....                   +.+|...|.+++|+|
T Consensus        16 ~~~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~-------------------~~~h~~~v~~~~~~~   75 (312)
T 4ery_A           16 KFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKT-------------------ISGHKLGISDVAWSS   75 (312)
T ss_dssp             EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECT
T ss_pred             EEEEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccchh-------------------hccCCCceEEEEEcC
Confidence            44444 999999999999999 568999999999999998876543                   578999999999999


Q ss_pred             CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCc
Q 001163          429 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES  508 (1134)
Q Consensus       429 d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~  508 (1134)
                      ++++|++|+.|+.|++||+.+++.+.   .+.+|...|.+++|+|+++  +|++|+.|+.|++||+.+++.+..+..|..
T Consensus        76 ~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  150 (312)
T 4ery_A           76 DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSD  150 (312)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred             CCCEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCCCC
Confidence            99999999999999999999988665   6889999999999999999  899999999999999999999999999999


Q ss_pred             CEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec-CCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC
Q 001163          509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG  587 (1134)
Q Consensus       509 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~  587 (1134)
                      +|.+++|++  ++.++++++.|+.|++||+.+.+....+. .+...+..++|+|+++++++++.++    .|++||+.++
T Consensus       151 ~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~----~i~iwd~~~~  224 (312)
T 4ery_A          151 PVSAVHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN----TLKLWDYSKG  224 (312)
T ss_dssp             CEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTT----EEEEEETTTT
T ss_pred             cEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCC----eEEEEECCCC
Confidence            999999965  45899999999999999999877666554 3455799999999999999998644    6999999999


Q ss_pred             eeEEEecCCCCCc--eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEE--CC
Q 001163          588 AVKRTYHGLGKRS--VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVST--ND  663 (1134)
Q Consensus       588 ~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~--~d  663 (1134)
                      +.+..+.+|....  +......+++.++++++.||.|++||+.+++.+..+..|  ...|.+++|+|++.++++++  .|
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h--~~~v~~~~~~p~~~~l~s~~~~~d  302 (312)
T 4ery_A          225 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH--TDVVISTACHPTENIIASAALEND  302 (312)
T ss_dssp             EEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCC--SSCEEEEEECSSSSEEEEEECTTT
T ss_pred             cEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhcc--CCcEEEEeecCcCCceEEEEccCC
Confidence            9999998876522  222334467889999999999999999999999888755  67899999999999999987  69


Q ss_pred             CcEEEEEcc
Q 001163          664 NGIKILANA  672 (1134)
Q Consensus       664 g~i~iw~~~  672 (1134)
                      +.|++|+..
T Consensus       303 ~~i~~W~~d  311 (312)
T 4ery_A          303 KTIKLWKSD  311 (312)
T ss_dssp             CCEEEEECC
T ss_pred             ccEEEecCC
Confidence            999999853

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-36  Score=350.96  Aligned_cols=348  Identities=13%  Similarity=0.184  Sum_probs=273.3

Q ss_pred             ccCCCCEEEEEEcCCCC-EEEEEeCCCEEEEEEc----cCCce------eeee-eeee------cCCCCEEEEEEecCCC
Q 001163          415 SDYTASVNRVMWSPDGT-LFGVAYSKHIVHLYTY----HGGDE------LRNH-LEIE------AHVGSVNDLAFSYPNK  476 (1134)
Q Consensus       415 ~~h~~~V~~l~~spd~~-~las~s~dg~v~iwd~----~~~~~------~~~~-~~l~------~h~~~V~~v~~s~~~~  476 (1134)
                      ..|.+.|++++|+|+++ +||+|+.||.|++||+    .+++.      .... ..+.      +|.+.|++++|+|+++
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  121 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN  121 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence            45679999999999999 9999999999999999    88772      2211 1112      2688999999999999


Q ss_pred             ceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCC---
Q 001163          477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHS---  553 (1134)
Q Consensus       477 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~---  553 (1134)
                        +|++++.|+.|++|| .+++.+..+.+|...|.+++|++  ++.+|++++.|+.|++||+.+......+..+...   
T Consensus       122 --~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  196 (425)
T 1r5m_A          122 --SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS  196 (425)
T ss_dssp             --EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred             --EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence              899999999999999 78899999999999999999965  4589999999999999999988777777666655   


Q ss_pred             ------------eeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCe
Q 001163          554 ------------STMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFM  621 (1134)
Q Consensus       554 ------------v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  621 (1134)
                                  +.+++|++++. +++++.+    +.|++||+.+++.+..+..|.. .+.+++|+|++++|++++.||.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----g~i~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~  270 (425)
T 1r5m_A          197 INAENHSGDGSLGVDVEWVDDDK-FVIPGPK----GAIFVYQITEKTPTGKLIGHHG-PISVLEFNDTNKLLLSASDDGT  270 (425)
T ss_dssp             ---------CCCBSCCEEEETTE-EEEECGG----GCEEEEETTCSSCSEEECCCSS-CEEEEEEETTTTEEEEEETTSC
T ss_pred             eeeccccCCcceeeEEEEcCCCE-EEEEcCC----CeEEEEEcCCCceeeeeccCCC-ceEEEEECCCCCEEEEEcCCCE
Confidence                        89999999865 6666553    3599999999999999988876 8999999999999999999999


Q ss_pred             EEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccc
Q 001163          622 IKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPA  701 (1134)
Q Consensus       622 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  701 (1134)
                      |++||+.+++.+..+..+  ...|.+++|+|++ ++++++.||.|++||+.++ .....+..                  
T Consensus       271 i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~------------------  328 (425)
T 1r5m_A          271 LRIWHGGNGNSQNCFYGH--SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN-TLLALSIV------------------  328 (425)
T ss_dssp             EEEECSSSBSCSEEECCC--SSCEEEEEEETTT-EEEEEETTSEEEEEETTTT-EEEEEEEC------------------
T ss_pred             EEEEECCCCccceEecCC--CccEEEEEECCCC-EEEEEeCCCcEEEEECCCC-cEeEeccc------------------
Confidence            999999999998888754  6689999999999 9999999999999998776 22222211                  


Q ss_pred             cccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEE
Q 001163          702 IGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSR  781 (1134)
Q Consensus       702 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~  781 (1134)
                                                                                               |...|.+
T Consensus       329 -------------------------------------------------------------------------~~~~i~~  335 (425)
T 1r5m_A          329 -------------------------------------------------------------------------DGVPIFA  335 (425)
T ss_dssp             -------------------------------------------------------------------------TTCCEEE
T ss_pred             -------------------------------------------------------------------------CCccEEE
Confidence                                                                                     4566788


Q ss_pred             EEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEe
Q 001163          782 LIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSA  861 (1134)
Q Consensus       782 l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~  861 (1134)
                      ++|+|+++++++++.||.+++|++...                      ....            ..+         ...
T Consensus       336 ~~~s~~~~~l~~~~~dg~i~i~~~~~~----------------------~~~~------------~~~---------~~~  372 (425)
T 1r5m_A          336 GRISQDGQKYAVAFMDGQVNVYDLKKL----------------------NSKS------------RSL---------YGN  372 (425)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEECHHH----------------------HC-----------------------------
T ss_pred             EEEcCCCCEEEEEECCCeEEEEECCCC----------------------ccce------------eee---------ecc
Confidence            888888888888888888888875421                      1000            000         000


Q ss_pred             eCCeEEEEEccCCeEEEEecCCCC--CeEEEEEcCCCCcEEEEEeCCCcEEEEEcc
Q 001163          862 SGGKISLFNMMTFKTMTTFMPPPP--AATFLAFHPQDNNIIAIGMEDSSIQIYNVR  915 (1134)
Q Consensus       862 sdg~i~lwd~~~~~~~~~~~~~~~--~v~~l~~sp~~~~~la~g~~dg~i~iwd~~  915 (1134)
                      .++   +++....+.+..+..|..  .|++++|+| ++++|++++.||.|++|++.
T Consensus       373 ~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          373 RDG---ILNPLPIPLYASYQSSQDNDYIFDLSWNC-AGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             ---------CEECCEEEEECCTTCCCCEEEEEECT-TSSEEEEEESSSCCEEEECC
T ss_pred             ccc---ccCcccchhhhhhcCcccCCceEEEEccC-CCceEEEEecCceEEEEeec
Confidence            122   222333457788888876  999999999 89999999999999999985

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=5.1e-37  Score=350.27  Aligned_cols=295  Identities=16%  Similarity=0.214  Sum_probs=252.4

Q ss_pred             cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163          414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD  493 (1134)
Q Consensus       414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd  493 (1134)
                      +.+|.+.|++++|+|++++||+|+.|++|+|||+.+++...   .+.+|...|.+++|+|+++  +|++|+.|+.+++||
T Consensus        62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw~  136 (380)
T 3iz6_a           62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIFN  136 (380)
T ss_dssp             ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEEE
T ss_pred             ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEEE
Confidence            78999999999999999999999999999999999987655   6888999999999999999  899999999999999


Q ss_pred             CCCCc-------eeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeee-----cCCCCCeeEEEECc
Q 001163          494 AVTGT-------KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY-----DAPGHSSTMMAYSA  561 (1134)
Q Consensus       494 ~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-----~~~~~~v~~~~~s~  561 (1134)
                      +.+..       ....+.+|.+.|.++.|.+..+ ..|++|+.|++|++||+.++.....+     ..|...|.+++|++
T Consensus       137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  215 (380)
T 3iz6_a          137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE-TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS  215 (380)
T ss_dssp             CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSS-SCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred             CCCCccccCCccceeeccCCCcceEEEEEecCCC-CEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence            87532       3456789999999999976543 67999999999999999988776655     45667899999977


Q ss_pred             -CCCEEEEEecCCCCCeEEEEEeCC-CCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecC
Q 001163          562 -DGARLFSCGTNKEGESYLVEWNES-EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD  639 (1134)
Q Consensus       562 -~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  639 (1134)
                       +++++++++.|+    .|++||++ .++.+..+.+|.. .|.+++|+|++++|++++.||+|++||+++++.+..+..+
T Consensus       216 ~~~~~l~sgs~D~----~v~~wd~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~  290 (380)
T 3iz6_a          216 LNANMFISGSCDT----TVRLWDLRITSRAVRTYHGHEG-DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNRE  290 (380)
T ss_dssp             SSCCEEEEEETTS----CEEEEETTTTCCCCEEECCCSS-CCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCC
T ss_pred             CCCCEEEEEECCC----eEEEEECCCCCcceEEECCcCC-CeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccc
Confidence             889999998755    59999998 5578888998887 8999999999999999999999999999999998887653


Q ss_pred             CC-----CCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhccccccccccccccccc
Q 001163          640 GG-----LQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGT  714 (1134)
Q Consensus       640 ~~-----~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  714 (1134)
                      ..     ...|.+++|+|+|++|++|+.||.|++||...+. ....+..                               
T Consensus       291 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~-~~~~~~~-------------------------------  338 (380)
T 3iz6_a          291 PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAE-MVLNLGT-------------------------------  338 (380)
T ss_dssp             CSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCC-EEEEECC-------------------------------
T ss_pred             ccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCc-eEEEEec-------------------------------
Confidence            22     2348899999999999999999999999987662 2222210                               


Q ss_pred             CcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeee
Q 001163          715 SLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILAL  794 (1134)
Q Consensus       715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~  794 (1134)
                                                                              ...+|...|.+++|+|+|++|+++
T Consensus       339 --------------------------------------------------------~~~~h~~~v~~l~~s~dg~~l~sg  362 (380)
T 3iz6_a          339 --------------------------------------------------------LQNSHEGRISCLGLSSDGSALCTG  362 (380)
T ss_dssp             --------------------------------------------------------SCSSCCCCCCEEEECSSSSEEEEE
T ss_pred             --------------------------------------------------------ccCCCCCceEEEEECCCCCEEEEe
Confidence                                                                    001378889999999999999999


Q ss_pred             ccCCeEEeeecCC
Q 001163          795 ASNAVHKLWKWPR  807 (1134)
Q Consensus       795 ~~dg~i~vw~~~~  807 (1134)
                      +.|+.|++|++..
T Consensus       363 s~D~~i~iW~~~~  375 (380)
T 3iz6_a          363 SWDKNLKIWAFSG  375 (380)
T ss_dssp             CTTSCEEEEECCS
T ss_pred             eCCCCEEEEecCC
Confidence            9999999998763

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.4e-36  Score=343.48  Aligned_cols=309  Identities=17%  Similarity=0.243  Sum_probs=249.4

Q ss_pred             eeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc
Q 001163          348 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS  427 (1134)
Q Consensus       348 ~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  427 (1134)
                      ++.+.++|...|++++|||||++ +|+|+ ++.++||++.+++.+....-.--. ..............+...|.+++|+
T Consensus        56 ~~~~~~~h~~~V~~v~fspdg~~-la~g~-~~~v~i~~~~~g~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~v~~v~~s  132 (393)
T 1erj_A           56 ELHKSLDHTSVVCCVKFSNDGEY-LATGC-NKTTQVYRVSDGSLVARLSDDSAA-NKDPENLNTSSSPSSDLYIRSVCFS  132 (393)
T ss_dssp             EEEEEEECSSCCCEEEECTTSSE-EEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEEC
T ss_pred             eeEEecCCCCEEEEEEECCCCCE-EEEEc-CCcEEEEEecCCCEEEEecCcccc-ccccccccccccCCCceeEEEEEEC
Confidence            34566789999999999999995 57776 689999999998866431100000 0000000001112344569999999


Q ss_pred             CCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCC
Q 001163          428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE  507 (1134)
Q Consensus       428 pd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~  507 (1134)
                      |||++||+|+.|+.|+|||+.+++.+.   .+.+|...|.+++|+|+++  +|++++.|++|++||+.++++...+. +.
T Consensus       133 ~dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~  206 (393)
T 1erj_A          133 PDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IE  206 (393)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CS
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cC
Confidence            999999999999999999999987655   6889999999999999999  79999999999999999999988886 56


Q ss_pred             cCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeee-------cCCCCCeeEEEECcCCCEEEEEecCCCCCeEEE
Q 001163          508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY-------DAPGHSSTMMAYSADGARLFSCGTNKEGESYLV  580 (1134)
Q Consensus       508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~  580 (1134)
                      ..+.++++++ .++.+|++++.|+.|++||+.+......+       ..|...|.+++|+|++++|++++.|+    .|+
T Consensus       207 ~~v~~~~~~~-~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~----~v~  281 (393)
T 1erj_A          207 DGVTTVAVSP-GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR----SVK  281 (393)
T ss_dssp             SCEEEEEECS-TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS----EEE
T ss_pred             CCcEEEEEEC-CCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCC----EEE
Confidence            7799999875 25589999999999999999887665554       45677899999999999999998654    699


Q ss_pred             EEeCCCC------------eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceE
Q 001163          581 EWNESEG------------AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCI  648 (1134)
Q Consensus       581 ~wd~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v  648 (1134)
                      +||+.+.            .+...+.+|.. .|.+++|+|++.+|++++.||.|++||..+++.+..+..|  ...|.++
T Consensus       282 ~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h--~~~v~~v  358 (393)
T 1erj_A          282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH--RNSVISV  358 (393)
T ss_dssp             EEEC---------------CEEEEEECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEE
T ss_pred             EEECCCCCCcccccCCCCCcceEEEecccC-cEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCC--CCCEEEE
Confidence            9998753            34566777776 8999999999999999999999999999999999988865  6689999


Q ss_pred             EEcC------CCcEEEEEECCCcEEEEEccC
Q 001163          649 RFNK------EGILLAVSTNDNGIKILANAD  673 (1134)
Q Consensus       649 ~~sp------~~~~l~~~~~dg~i~iw~~~~  673 (1134)
                      +|++      ++.+|++|+.||+|++|++..
T Consensus       359 ~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          359 AVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             EECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             EecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            9886      688999999999999999864

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-37  Score=360.49  Aligned_cols=298  Identities=15%  Similarity=0.246  Sum_probs=249.4

Q ss_pred             eecCCCeeEEEEcCCCCeEEEEE----------eCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEE
Q 001163          353 LNQGSAVKSMDFHPVQQILLVVG----------TNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVN  422 (1134)
Q Consensus       353 ~~h~~~V~~v~fsp~g~~lla~g----------s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  422 (1134)
                      +.+...|.+++|||+|+.++++|          +.|+.|+|||+.+++.....                 ....|...|.
T Consensus         9 l~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~-----------------~~~~~~~~v~   71 (416)
T 2pm9_A            9 LAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPI-----------------ASLQVDSKFN   71 (416)
T ss_dssp             -CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCS-----------------CCCCCSSCEE
T ss_pred             HhhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEE-----------------EEEecCCceE
Confidence            34556789999999998788999          88999999999987632100                 1245889999


Q ss_pred             EEEEcCCCCEEEEEeCCCEEEEEEccCCce-eeeeeeeecCCCCEEEEEEecC-CCceEEEEEeCCCeEEEEECCCCc--
Q 001163          423 RVMWSPDGTLFGVAYSKHIVHLYTYHGGDE-LRNHLEIEAHVGSVNDLAFSYP-NKQLSVVTCGEDRVIKVWDAVTGT--  498 (1134)
Q Consensus       423 ~l~~spd~~~las~s~dg~v~iwd~~~~~~-~~~~~~l~~h~~~V~~v~~s~~-~~~~~l~s~s~d~~i~iwd~~~~~--  498 (1134)
                      +++|+|++++|++|+.||.|++||+.+... ......+.+|...|++++|+|+ +.  +|++++.|+.|++||+.+++  
T Consensus        72 ~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~  149 (416)
T 2pm9_A           72 DLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTES  149 (416)
T ss_dssp             EEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSC
T ss_pred             EEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCccc
Confidence            999999999999999999999999987211 1123367899999999999998 66  79999999999999999887  


Q ss_pred             ----eeEE---ecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCC------CCCeeEEEECcCC-C
Q 001163          499 ----KQYI---FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP------GHSSTMMAYSADG-A  564 (1134)
Q Consensus       499 ----~~~~---~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------~~~v~~~~~s~~~-~  564 (1134)
                          ....   +.+|...|.+++|+++. +.++++++.|+.|++||++..+....+..+      ...+.+++|+|++ .
T Consensus       150 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  228 (416)
T 2pm9_A          150 PSNYTPLTPGQSMSSVDEVISLAWNQSL-AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNST  228 (416)
T ss_dssp             TTTCCCBCCCCSCCSSCCCCEEEECSSC-TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTT
T ss_pred             cccccccccccccCCCCCeeEEEeCCCC-CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCC
Confidence                3333   46799999999997652 479999999999999999988777777766      6789999999997 5


Q ss_pred             EEEEEecCCCCCeEEEEEeCCCC-eeEEEec-CCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeEEEecCCC
Q 001163          565 RLFSCGTNKEGESYLVEWNESEG-AVKRTYH-GLGKRSVGVVQFDT-TKNRFLAAGDEFMIKFWDMDNVNLLASIDADGG  641 (1134)
Q Consensus       565 ~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  641 (1134)
                      ++++++.++ .+..|++||++++ .....+. +|.. .+.+++|+| ++++|++++.||.|++||+.+++.+..+..|  
T Consensus       229 ~l~~~~~d~-~~~~i~~~d~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~--  304 (416)
T 2pm9_A          229 RVATATGSD-NDPSILIWDLRNANTPLQTLNQGHQK-GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR--  304 (416)
T ss_dssp             EEEEEECCS-SSCCCCEEETTSTTSCSBCCCSCCSS-CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS--
T ss_pred             EEEEEECCC-CCceEEEEeCCCCCCCcEEeecCccC-ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC--
Confidence            788777543 1225999999986 6667777 6665 899999999 8999999999999999999999999998865  


Q ss_pred             CCCcceEEEcCCC-cEEEEEECCCcEEEEEccCC
Q 001163          642 LQASPCIRFNKEG-ILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       642 ~~~v~~v~~sp~~-~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      ...|.+++|+|++ .+|++++.||.|++|++.+.
T Consensus       305 ~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~  338 (416)
T 2pm9_A          305 GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL  338 (416)
T ss_dssp             SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred             CCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence            5689999999998 89999999999999999876

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=4.1e-35  Score=379.29  Aligned_cols=524  Identities=11%  Similarity=0.046  Sum_probs=378.4

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la  434 (1134)
                      +...+.+.+|||+  ++ |..+. +.|.+|++.+++...                    +.+|...|.+++|||||++||
T Consensus        13 ~~~~~~~~~~S~~--~i-af~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la   68 (1045)
T 1k32_A           13 MPNLLLNPDIHGD--RI-IFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA   68 (1045)
T ss_dssp             CCCCCEEEEEETT--EE-EEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred             ccceEeCcEEeCC--EE-EEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence            3456889999964  44 44443 689999998876433                    567999999999999999999


Q ss_pred             EEeCC------CEEEEEEccCCceeeeeeeeecCCCCE-------EEEEEecCCCceEEEEEeCC------CeEEEEECC
Q 001163          435 VAYSK------HIVHLYTYHGGDELRNHLEIEAHVGSV-------NDLAFSYPNKQLSVVTCGED------RVIKVWDAV  495 (1134)
Q Consensus       435 s~s~d------g~v~iwd~~~~~~~~~~~~l~~h~~~V-------~~v~~s~~~~~~~l~s~s~d------~~i~iwd~~  495 (1134)
                      +++.+      ..|++||+.+++. +   .+..|...+       ..++|+|||+  ++++++.+      ..|.+||+.
T Consensus        69 ~~s~~~~~~~~~~i~~~d~~~g~~-~---~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~  142 (1045)
T 1k32_A           69 IRVMRGSSLNTADLYFYNGENGEI-K---RITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND  142 (1045)
T ss_dssp             EEEEESTTCCEEEEEEEETTTTEE-E---ECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred             EEEeeccCCCCCeEEEEECCCCCe-E---EcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence            88653      4799999998763 2   477888888       9999999998  67777754      468888887


Q ss_pred             CCceeEEecCCCcCEEEEeccccCCccEEEEecC------------CCcEEEEecCCCCceeeecCCCCCeeEEEECcCC
Q 001163          496 TGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT------------DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADG  563 (1134)
Q Consensus       496 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~------------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~  563 (1134)
                      +++... +..+..  ..++|++   | ++++++.            +...++|.....+....+..+...+.++.|+++ 
T Consensus       143 ~g~~~~-l~~~~~--~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-  214 (1045)
T 1k32_A          143 GINFVP-LNLGPA--THILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-  214 (1045)
T ss_dssp             GTEEEE-CCSCSC--SEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-
T ss_pred             CCCeEE-ecCCCc--ceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-
Confidence            776543 333322  3455654   5 7777642            345667754444445556777889999999988 


Q ss_pred             CEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCC---
Q 001163          564 ARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG---  640 (1134)
Q Consensus       564 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---  640 (1134)
                      ..++++..  ++...|+.++...+ ....+..+.  .+...+|+|+|+.++.+. ++.|++||.... .+..+..+.   
T Consensus       215 ~l~~~~~~--dg~~~l~~~~~~g~-~~~~l~~~~--~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~-~l~~l~~~~~~~  287 (1045)
T 1k32_A          215 RIYFITDI--DGFGQIYSTDLDGK-DLRKHTSFT--DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE-KIEKIEIGDLES  287 (1045)
T ss_dssp             EEEEEECT--TSSCEEEEEETTSC-SCEECCCCC--SSCEEEEEESSSCEEEEE-TTEEEEECTTTC-CEEECCCCCCCB
T ss_pred             EEEEEEec--cCceEEEEEeCCCC-cceEecCCC--CcceeeEcCCCCEEEEEe-CCEEEEecCCce-EeeeeccCcccc
Confidence            44444433  23333444444333 344455444  355679999999888874 899999999544 343443321   


Q ss_pred             ------CCCCcceEEEc-CCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccc
Q 001163          641 ------GLQASPCIRFN-KEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVG  713 (1134)
Q Consensus       641 ------~~~~v~~v~~s-p~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  713 (1134)
                            +...+.+++|+ |+|+.|++++ ++.+.+|+..++. . ..+.                               
T Consensus       288 ~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~-~-~~~~-------------------------------  333 (1045)
T 1k32_A          288 PEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY-V-LKVP-------------------------------  333 (1045)
T ss_dssp             CCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB-E-EECS-------------------------------
T ss_pred             cccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc-e-EEcc-------------------------------
Confidence                  12358899999 9999999888 7899999876551 1 1110                               


Q ss_pred             cCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccc-cEEEEEEecCCceee
Q 001163          714 TSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAM-RVSRLIYTNSGLAIL  792 (1134)
Q Consensus       714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~spdg~~l~  792 (1134)
                                                                                  .+.. .+..++|+ ||+.++
T Consensus       334 ------------------------------------------------------------~~~~~~~~~~~~s-dg~~l~  352 (1045)
T 1k32_A          334 ------------------------------------------------------------EPLRIRYVRRGGD-TKVAFI  352 (1045)
T ss_dssp             ------------------------------------------------------------CCSCEEEEEECSS-SEEEEE
T ss_pred             ------------------------------------------------------------CCCcceEEeeeEc-CCCeEE
Confidence                                                                        1333 67889999 999999


Q ss_pred             eeccCCeEE-eeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEE
Q 001163          793 ALASNAVHK-LWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFN  870 (1134)
Q Consensus       793 ~~~~dg~i~-vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd  870 (1134)
                      .++.++.+. +|++.                      ++....  +.+  |...+..++|||||++|++++ ++.|++||
T Consensus       353 ~~s~~~~l~~~~d~~----------------------~~~~~~--l~~--~~~~~~~~~~SpDG~~la~~~~~~~v~~~d  406 (1045)
T 1k32_A          353 HGTREGDFLGIYDYR----------------------TGKAEK--FEE--NLGNVFAMGVDRNGKFAVVANDRFEIMTVD  406 (1045)
T ss_dssp             EEETTEEEEEEEETT----------------------TCCEEE--CCC--CCCSEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             EEECCCceEEEEECC----------------------CCCceE--ecC--CccceeeeEECCCCCEEEEECCCCeEEEEE
Confidence            888877776 76543                      333222  222  678899999999999999988 78999999


Q ss_pred             ccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC----------cEEEEEcccceEEEeccCccCceEEEEEeeCCC
Q 001163          871 MMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDS----------SIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLN  940 (1134)
Q Consensus       871 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg----------~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~  940 (1134)
                      +.+++....+.+|...+.+++|+| ||++|++++.++          .|++||+.+++ +..+..|...+..++|+|||+
T Consensus       407 ~~tg~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~  484 (1045)
T 1k32_A          407 LETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSK  484 (1045)
T ss_dssp             TTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSC
T ss_pred             CCCCceEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCC
Confidence            999998888878889999999999 899888887644          99999999888 677888988999999999999


Q ss_pred             EEEEEeCCCcEEEEECCCCccccc---ee--eee-----------------------cCCC-------CCCCCCceEEEE
Q 001163          941 VLVSSGADSQLCVWSTDGWEKQAS---KF--LTI-----------------------PNGR-------TASALADTRVQF  985 (1134)
Q Consensus       941 ~l~s~s~Dg~i~iwd~~~~~~~~~---~~--~~~-----------------------~~~~-------~~~~~~v~~l~f  985 (1134)
                      +|++++.++...+|+.........   ..  +..                       ..+.       ......+..++|
T Consensus       485 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~  564 (1045)
T 1k32_A          485 NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIP  564 (1045)
T ss_dssp             EEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEE
T ss_pred             EEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEE
Confidence            999999988888887543221000   00  000                       0000       001145788999


Q ss_pred             cCCCCEEEE--------------EeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCC
Q 001163          986 HLDQTHLLA--------------VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTAST 1051 (1134)
Q Consensus       986 s~dg~~l~~--------------~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~ 1051 (1134)
                      +|||+++++              .....|.+||+.+++... +.     ..+.+++|||||++|++++.| .|++||+.+
T Consensus       565 s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~-----~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~  637 (1045)
T 1k32_A          565 LESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE-VK-----NNLTDLRLSADRKTVMVRKDD-GKIYTFPLE  637 (1045)
T ss_dssp             CSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE-EE-----EEEEEEEECTTSCEEEEEETT-SCEEEEESS
T ss_pred             cCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEE-ee-----cCcceEEECCCCCEEEEEcCC-cEEEEeCcc
Confidence            999997774              134678999998887532 22     568899999999999999876 799999988


Q ss_pred             Cc
Q 001163         1052 LR 1053 (1134)
Q Consensus      1052 ~~ 1053 (1134)
                      ++
T Consensus       638 ~~  639 (1045)
T 1k32_A          638 KP  639 (1045)
T ss_dssp             CT
T ss_pred             Cc
Confidence            87

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.1e-35  Score=327.90  Aligned_cols=296  Identities=17%  Similarity=0.264  Sum_probs=251.0

Q ss_pred             ccccCCCCEEEEEEcCCC-CEEEEEeCCCEEEEEEccCCce--eeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeE
Q 001163          413 LSSDYTASVNRVMWSPDG-TLFGVAYSKHIVHLYTYHGGDE--LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVI  489 (1134)
Q Consensus       413 ~~~~h~~~V~~l~~spd~-~~las~s~dg~v~iwd~~~~~~--~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i  489 (1134)
                      .+.+|.+.|++++|+|++ ++|++|+.|++|++||+.+...  -.....+.+|...|.+++|+|+++  +|++|+.|++|
T Consensus        12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v   89 (319)
T 3frx_A           12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTL   89 (319)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred             EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEE
Confidence            378999999999999965 8999999999999999975321  123446889999999999999999  89999999999


Q ss_pred             EEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcC------C
Q 001163          490 KVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSAD------G  563 (1134)
Q Consensus       490 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~------~  563 (1134)
                      ++||+.+++.+..+.+|...|.+++|++  ++.+|++++.|++|++||++ ......+..|...+.++.++|.      +
T Consensus        90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  166 (319)
T 3frx_A           90 RLWDVATGETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDS  166 (319)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------C
T ss_pred             EEEECCCCCeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence            9999999999999999999999999865  45899999999999999996 4556667788889999999985      4


Q ss_pred             CEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCC
Q 001163          564 ARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQ  643 (1134)
Q Consensus       564 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  643 (1134)
                      ..+++++.++    .|++||+.+++....+.+|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+..+   .
T Consensus       167 ~~l~s~~~d~----~i~~wd~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~  238 (319)
T 3frx_A          167 VTIISAGNDK----MVKAWNLNQFQIEADFIGHNS-NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ---D  238 (319)
T ss_dssp             CEEEEEETTS----CEEEEETTTTEEEEEECCCCS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC---S
T ss_pred             cEEEEEeCCC----EEEEEECCcchhheeecCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC---C
Confidence            4888888654    599999999999999999887 8999999999999999999999999999999999888753   4


Q ss_pred             CcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCccc
Q 001163          644 ASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPA  723 (1134)
Q Consensus       644 ~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  723 (1134)
                      .|.+++|+|++.++++++.+ .+++|++... .....+..+...                                    
T Consensus       239 ~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~-~~~~~~~~~~~~------------------------------------  280 (319)
T 3frx_A          239 EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQ-YLVDDLRPEFAG------------------------------------  280 (319)
T ss_dssp             CEEEEEECSSSSEEEEEETT-EEEEEEETTE-EEEEEECCCCTT------------------------------------
T ss_pred             cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcC-eeeeccCccccc------------------------------------
Confidence            79999999999999988765 5999998765 333333211000                                    


Q ss_pred             ccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEee
Q 001163          724 AAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLW  803 (1134)
Q Consensus       724 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw  803 (1134)
                                                                     ....+...+.+++|+|||++|++++.||.|+||
T Consensus       281 -----------------------------------------------~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vW  313 (319)
T 3frx_A          281 -----------------------------------------------YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW  313 (319)
T ss_dssp             -----------------------------------------------CCGGGCCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             -----------------------------------------------cccCcCcceeEEEECCCCCEEEEeecCceEEEE
Confidence                                                           001255678999999999999999999999999


Q ss_pred             ecC
Q 001163          804 KWP  806 (1134)
Q Consensus       804 ~~~  806 (1134)
                      ++.
T Consensus       314 d~~  316 (319)
T 3frx_A          314 QVM  316 (319)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            875

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.8e-36  Score=333.13  Aligned_cols=298  Identities=15%  Similarity=0.203  Sum_probs=231.8

Q ss_pred             eeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEE
Q 001163          348 TVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW  426 (1134)
Q Consensus       348 ~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  426 (1134)
                      ++++.+. |...|++++|+|+   +||+|+.|++|+|||+.++.......+               ...+|...|.+++|
T Consensus         5 ~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~---------------~~~~h~~~v~~v~~   66 (330)
T 2hes_X            5 NLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVL---------------DETAHKKAIRSVAW   66 (330)
T ss_dssp             EEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEE---------------CTTCCCSCEEEEEE
T ss_pred             ccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEE---------------ecCCccCCEEEEEE
Confidence            3455665 9999999999998   679999999999999987532111000               01349999999999


Q ss_pred             cCCCCEEEEEeCCCEEEEEEccCCc----eeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCC----Cc
Q 001163          427 SPDGTLFGVAYSKHIVHLYTYHGGD----ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT----GT  498 (1134)
Q Consensus       427 spd~~~las~s~dg~v~iwd~~~~~----~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~----~~  498 (1134)
                      +|++++||+|+.|++|+|||+....    .......+.+|...|.+++|+|+++  +|++|+.|++|++||+..    .+
T Consensus        67 sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~~~  144 (330)
T 2hes_X           67 RPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEEYE  144 (330)
T ss_dssp             CTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCCCE
T ss_pred             CCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCCeE
Confidence            9999999999999999999996432    1223346889999999999999999  899999999999999943    25


Q ss_pred             eeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCC--CceeeecCCCCCeeEEEECcC--CCEEEEEecCCC
Q 001163          499 KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL--GSRVDYDAPGHSSTMMAYSAD--GARLFSCGTNKE  574 (1134)
Q Consensus       499 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~~~~  574 (1134)
                      ++..+.+|...|.+++|+++  +.+|++++.|++|++||....  .....+..|...|.+++|+|+  +.+|++++.|+ 
T Consensus       145 ~~~~~~~h~~~v~~v~~~p~--~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~-  221 (330)
T 2hes_X          145 CISVLQEHSQDVKHVIWHPS--EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS-  221 (330)
T ss_dssp             EEEEECCCSSCEEEEEECSS--SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTS-
T ss_pred             EEEEeccCCCceEEEEECCC--CCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCC-
Confidence            67889999999999999764  489999999999999998765  455667888889999999998  67899988654 


Q ss_pred             CCeEEEEEeCCCC--------eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce--eEEEecCCCCC-
Q 001163          575 GESYLVEWNESEG--------AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL--LASIDADGGLQ-  643 (1134)
Q Consensus       575 ~~~~i~~wd~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~-  643 (1134)
                         .|++||+..+        .....+...+...|.+++|++++ .|++++.||.|++||..+++.  +... ..++.. 
T Consensus       222 ---~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~h~~~  296 (330)
T 2hes_X          222 ---TVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-ALCHGVY  296 (330)
T ss_dssp             ---CEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-SCTTTTS
T ss_pred             ---eEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-ccccccc
Confidence               5999998765        44555655344489999999765 899999999999999988743  2222 223454 


Q ss_pred             CcceEEEcC--CCcEEEEEECCCcEEEEEccC
Q 001163          644 ASPCIRFNK--EGILLAVSTNDNGIKILANAD  673 (1134)
Q Consensus       644 ~v~~v~~sp--~~~~l~~~~~dg~i~iw~~~~  673 (1134)
                      .|.+++|+|  ++.+|++++.||+|++|++..
T Consensus       297 ~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          297 EINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             CEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             eEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            799999999  789999999999999999764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=3e-35  Score=326.38  Aligned_cols=290  Identities=19%  Similarity=0.305  Sum_probs=255.2

Q ss_pred             cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163          414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD  493 (1134)
Q Consensus       414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd  493 (1134)
                      +.+|...|++++|+|++++||+|+.||.|++||+.+++...   .+.+|...|.+++|+|+++  +|++++.|+.|++||
T Consensus        19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vwd   93 (312)
T 4ery_A           19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIWD   93 (312)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEE
T ss_pred             EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEEE
Confidence            67999999999999999999999999999999999887654   6789999999999999999  899999999999999


Q ss_pred             CCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCC
Q 001163          494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK  573 (1134)
Q Consensus       494 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~  573 (1134)
                      +.+++++..+.+|...|.+++|+++  +.+|++++.|+.|++||+++.+....+..+...|.+++|+|+++++++++.++
T Consensus        94 ~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  171 (312)
T 4ery_A           94 VSSGKCLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG  171 (312)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSS--SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCCCcEEEEEcCCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence            9999999999999999999999654  48999999999999999999888888888888999999999999999998754


Q ss_pred             CCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEc-C
Q 001163          574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFN-K  652 (1134)
Q Consensus       574 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s-p  652 (1134)
                          .|++||+.+++.+..+.......+..++|+|++++|++++.||.|++||+.+++.+..+..+..........++ +
T Consensus       172 ----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (312)
T 4ery_A          172 ----LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT  247 (312)
T ss_dssp             ----CEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECS
T ss_pred             ----cEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeC
Confidence                59999999999888887666668999999999999999999999999999999999888766443333334444 6


Q ss_pred             CCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCC
Q 001163          653 EGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSND  732 (1134)
Q Consensus       653 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  732 (1134)
                      ++.+|++++.||.|++||+.++ ..+..+.+                                                 
T Consensus       248 ~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~-------------------------------------------------  277 (312)
T 4ery_A          248 GGKWIVSGSEDNLVYIWNLQTK-EIVQKLQG-------------------------------------------------  277 (312)
T ss_dssp             SSCEEEECCTTSCEEEEETTTC-CEEEEECC-------------------------------------------------
T ss_pred             CCcEEEEECCCCEEEEEECCCc-hhhhhhhc-------------------------------------------------
Confidence            7899999999999999999876 33333322                                                 


Q ss_pred             CccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeec--cCCeEEeeecC
Q 001163          733 SRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALA--SNAVHKLWKWP  806 (1134)
Q Consensus       733 ~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~--~dg~i~vw~~~  806 (1134)
                                                                |...|.+++|+|++..+++++  .|+.|++|+.+
T Consensus       278 ------------------------------------------h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          278 ------------------------------------------HTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             ------------------------------------------CSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             ------------------------------------------cCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence                                                      667899999999999999886  69999999753

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.4e-35  Score=333.51  Aligned_cols=299  Identities=18%  Similarity=0.294  Sum_probs=240.4

Q ss_pred             eEEEee-cCCCeeEEEE-----cC-CCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCE
Q 001163          349 VVMTLN-QGSAVKSMDF-----HP-VQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASV  421 (1134)
Q Consensus       349 ~~~~~~-h~~~V~~v~f-----sp-~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  421 (1134)
                      +...+. |.+.|++++|     ++ +++ +|++|+.|++|+|||+.+++......            .....+.+|...|
T Consensus        13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~~~------------~~~~~l~~h~~~V   79 (343)
T 2xzm_R           13 KRGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGYFG------------IPHKALTGHNHFV   79 (343)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSBSE------------EEEEEECCCSSCE
T ss_pred             eeeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCcccccc------------cccchhccCCCce
Confidence            344555 9999999999     77 787 67999999999999997654211000            0111368999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeE
Q 001163          422 NRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY  501 (1134)
Q Consensus       422 ~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~  501 (1134)
                      .+++|+|++.+|++|+.|++|++||+.+++.+.   .+.+|...|.+++|+|+++  +|++++.|++|++||+. +....
T Consensus        80 ~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~-~~~~~  153 (343)
T 2xzm_R           80 SDLALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNIL-GECKF  153 (343)
T ss_dssp             EEEEECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESS-SCEEE
T ss_pred             EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEecc-CCcee
Confidence            999999999999999999999999999988665   6889999999999999999  79999999999999987 44444


Q ss_pred             Eec---CCCcCEEEEeccccCC--------ccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEe
Q 001163          502 IFE---GHESPVYSICPHHKEN--------IQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCG  570 (1134)
Q Consensus       502 ~~~---~h~~~v~~~~~~~~~~--------~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  570 (1134)
                      ...   +|...|.+++|++...        +.++++++.|+.|++||. .......+..|...|.+++|+|+|++|++++
T Consensus       154 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs  232 (343)
T 2xzm_R          154 SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGG  232 (343)
T ss_dssp             ECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             eeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEc
Confidence            433   7999999999976532        268999999999999994 3445556778888999999999999999998


Q ss_pred             cCCCCCeEEEEEeCC-CCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeE--EEec---------
Q 001163          571 TNKEGESYLVEWNES-EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLA--SIDA---------  638 (1134)
Q Consensus       571 ~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~---------  638 (1134)
                      .|+    .|++||+. .......+.. . ..+.+++|+|++.++++ +.|+.|++||+.+++...  .+..         
T Consensus       233 ~dg----~v~iwd~~~~~~~~~~~~~-~-~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~  305 (343)
T 2xzm_R          233 KDK----KLLIWDILNLTYPQREFDA-G-STINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQ  305 (343)
T ss_dssp             TTC----EEEEEESSCCSSCSEEEEC-S-SCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGBTTB
T ss_pred             CCC----eEEEEECCCCcccceeecC-C-CcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhhhhh
Confidence            644    69999994 4444444432 2 26999999999987764 557889999998876544  3331         


Q ss_pred             CCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163          639 DGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       639 ~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      .++...|.+++|+|+|++|++|+.||.|++|++.++
T Consensus       306 ~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          306 KGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             CCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             cCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence            144567899999999999999999999999998764

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2e-35  Score=332.10  Aligned_cols=286  Identities=13%  Similarity=0.152  Sum_probs=242.7

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la  434 (1134)
                      +...|.+++|||||+.+ +++..++.+.+|+.........                   ..+|...|++++|+|++++|+
T Consensus         8 ~~~~v~~~~~s~dg~~~-~~~~~~~~~~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~~~l~   67 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQ-PVPFPPDALIGPGIPRHARQIN-------------------TLNHGEVVCAVTISNPTRHVY   67 (337)
T ss_dssp             EEEECCEEEECSSSCEE-ECCCCTTSSSSTTCCSEEEEEE-------------------EECCSSCCCEEEECSSSSEEE
T ss_pred             cCCceeEEEECCCCCEE-EeecCCCcEeccccCCccccce-------------------eccCCCceEEEEEecCCcEEE
Confidence            56789999999999954 5666666666665544322211                   347999999999999999999


Q ss_pred             EEeCCCEEEEEEccCCceeeeeeeee--cCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCc--eeEEecCCCcCE
Q 001163          435 VAYSKHIVHLYTYHGGDELRNHLEIE--AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT--KQYIFEGHESPV  510 (1134)
Q Consensus       435 s~s~dg~v~iwd~~~~~~~~~~~~l~--~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~h~~~v  510 (1134)
                      +++ ||.|++||+.+++.......+.  +|...|.+++|+|+++  +|++++.|+.|++||+.+++  ....+.+|...|
T Consensus        68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i  144 (337)
T 1gxr_A           68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC  144 (337)
T ss_dssp             EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred             EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence            999 9999999999876554443444  7999999999999999  89999999999999999887  667788999999


Q ss_pred             EEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeE
Q 001163          511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK  590 (1134)
Q Consensus       511 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~  590 (1134)
                      .+++|++  ++.++++++.|+.|++||+.+.+....+..+...+.+++|+|+++++++++.+    +.|++||+++++.+
T Consensus       145 ~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~  218 (337)
T 1gxr_A          145 YALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD----NTVRSWDLREGRQL  218 (337)
T ss_dssp             EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT----SEEEEEETTTTEEE
T ss_pred             EEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecC----CcEEEEECCCCceE
Confidence            9999965  45899999999999999999888888888888899999999999999999764    46999999999988


Q ss_pred             EEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEE
Q 001163          591 RTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILA  670 (1134)
Q Consensus       591 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~  670 (1134)
                      ..+...  ..+.+++|+|+++++++++.+|.|++||+.+++... +.  .+...+.+++|+|++++|++++.||.|++|+
T Consensus       219 ~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~  293 (337)
T 1gxr_A          219 QQHDFT--SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWR  293 (337)
T ss_dssp             EEEECS--SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-EC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             eeecCC--CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-Ec--CCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence            877532  379999999999999999999999999999887643 33  4467899999999999999999999999999


Q ss_pred             ccCC
Q 001163          671 NADG  674 (1134)
Q Consensus       671 ~~~~  674 (1134)
                      +.++
T Consensus       294 ~~~~  297 (337)
T 1gxr_A          294 TPYG  297 (337)
T ss_dssp             TTTC
T ss_pred             CCCC
Confidence            9876

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=5.3e-35  Score=329.09  Aligned_cols=302  Identities=19%  Similarity=0.258  Sum_probs=257.7

Q ss_pred             eeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEE
Q 001163          348 TVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW  426 (1134)
Q Consensus       348 ~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  426 (1134)
                      .+..+|. |.+.|++|+|+|++..+||+|+.||+|+|||+.+++......              ...+.+|...|.+++|
T Consensus        29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~--------------~~~l~~h~~~V~~~~~   94 (340)
T 4aow_A           29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIP--------------QRALRGHSHFVSDVVI   94 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEE--------------EEEECCCSSCEEEEEE
T ss_pred             EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccccee--------------eEEEeCCCCCEEEEEE
Confidence            3445665 999999999999865578999999999999998765432211              1236789999999999


Q ss_pred             cCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCcee-EEecC
Q 001163          427 SPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ-YIFEG  505 (1134)
Q Consensus       427 spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~  505 (1134)
                      +|+|++|++|+.|+.|++|+...+....   ....+...+..+.+++++.  +|++++.|+.+++||+...... ..+.+
T Consensus        95 s~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~  169 (340)
T 4aow_A           95 SSDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDES  169 (340)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSS
T ss_pred             CCCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEecc
Confidence            9999999999999999999999877554   4667888999999999998  7999999999999998766543 45678


Q ss_pred             CCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC
Q 001163          506 HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES  585 (1134)
Q Consensus       506 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~  585 (1134)
                      |...+..++|.+.+...++++++.|+.|++||+........+..+...|.+++|+|++++|++++.|+    .|++||+.
T Consensus       170 ~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg----~i~iwd~~  245 (340)
T 4aow_A          170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDG----QAMLWDLN  245 (340)
T ss_dssp             CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTC----EEEEEETT
T ss_pred             ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCC----eEEEEEec
Confidence            99999999998887778899999999999999999888888888999999999999999999998644    69999999


Q ss_pred             CCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEec-------CCCCCCcceEEEcCCCcEEE
Q 001163          586 EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA-------DGGLQASPCIRFNKEGILLA  658 (1134)
Q Consensus       586 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~v~~v~~sp~~~~l~  658 (1134)
                      +++.+..+..+.  .+..++|+|++. +++++.|+.|++||++++..+..+..       ..+...|.+++|+|+|++|+
T Consensus       246 ~~~~~~~~~~~~--~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~  322 (340)
T 4aow_A          246 EGKHLYTLDGGD--IINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF  322 (340)
T ss_dssp             TTEEEEEEECSS--CEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEE
T ss_pred             cCceeeeecCCc--eEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEE
Confidence            999999888764  789999999875 55667799999999999887776642       24567899999999999999


Q ss_pred             EEECCCcEEEEEccCCc
Q 001163          659 VSTNDNGIKILANADGI  675 (1134)
Q Consensus       659 ~~~~dg~i~iw~~~~~~  675 (1134)
                      +|+.||.|+||++.+|.
T Consensus       323 sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          323 AGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEETTSCEEEEEEEC--
T ss_pred             EEeCCCEEEEEeCCCcC
Confidence            99999999999999873

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=9.4e-35  Score=326.52  Aligned_cols=317  Identities=14%  Similarity=0.158  Sum_probs=266.1

Q ss_pred             ceeeeEeCCCCCCcccccCCCC--------CceeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeee
Q 001163          324 NILPVAYTPQSLGQSSYSTDDL--------PKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVK  395 (1134)
Q Consensus       324 ~i~~~~~s~~~~~l~~~~~d~~--------~~~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~  395 (1134)
                      .|.+++|+|+|+.++....++.        .......++|...|++++|+|+++ ++++++ ||.|++||+.+++.....
T Consensus        11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~-dg~i~iw~~~~~~~~~~~   88 (337)
T 1gxr_A           11 PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKSPV   88 (337)
T ss_dssp             ECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCSCS
T ss_pred             ceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCc-EEEEcC-CCeEEEEECCCCCceeee
Confidence            4668999999999875543321        234556677999999999999999 457777 999999999887643210


Q ss_pred             ceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCC
Q 001163          396 SFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPN  475 (1134)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~  475 (1134)
                                    ......+|...|.+++|+|++++|++++.|+.|++||+.+++.. ....+.+|...|.+++|+|++
T Consensus        89 --------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~i~~~~~~~~~  153 (337)
T 1gxr_A           89 --------------SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDS  153 (337)
T ss_dssp             --------------EEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECTTS
T ss_pred             --------------ecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc-eeeecccCCCceEEEEECCCC
Confidence                          00012379999999999999999999999999999999987632 233578899999999999999


Q ss_pred             CceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCee
Q 001163          476 KQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSST  555 (1134)
Q Consensus       476 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~  555 (1134)
                      +  ++++++.|+.|++||+.+++.+..+.+|...|.+++|++  ++.++++++.|+.|++||++..+....+. +...+.
T Consensus       154 ~--~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~  228 (337)
T 1gxr_A          154 K--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN--DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIF  228 (337)
T ss_dssp             S--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEE
T ss_pred             C--EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECC--CCCEEEEEecCCcEEEEECCCCceEeeec-CCCceE
Confidence            9  899999999999999999999999999999999999966  45899999999999999998876665554 466899


Q ss_pred             EEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEE
Q 001163          556 MMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLAS  635 (1134)
Q Consensus       556 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  635 (1134)
                      +++|+|+++++++++.++    .|++||+.+++.. .+..|.. .+.+++|+|++++|++++.||.|++||+.+++.+..
T Consensus       229 ~~~~s~~~~~l~~~~~~~----~i~~~~~~~~~~~-~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~  302 (337)
T 1gxr_A          229 SLGYCPTGEWLAVGMESS----NVEVLHVNKPDKY-QLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ  302 (337)
T ss_dssp             EEEECTTSSEEEEEETTS----CEEEEETTSSCEE-EECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEEECCCCCEEEEEcCCC----cEEEEECCCCCeE-EEcCCcc-ceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE
Confidence            999999999999997644    4999999988764 4566655 899999999999999999999999999999988865


Q ss_pred             EecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEc
Q 001163          636 IDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN  671 (1134)
Q Consensus       636 ~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~  671 (1134)
                      ..   +...+.+++|+|++++|++++.||.|++|++
T Consensus       303 ~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          303 SK---ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EE---CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             ec---CCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            53   2567999999999999999999999999986

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=6.7e-35  Score=327.89  Aligned_cols=293  Identities=12%  Similarity=0.206  Sum_probs=232.0

Q ss_pred             eeEEEecCCCCCceEEEEE-----cC-CCCEEEEEeCCCeEEEEEcCCC-------ceeEEEecCCCCCCcceEEEcCCC
Q 001163          588 AVKRTYHGLGKRSVGVVQF-----DT-TKNRFLAAGDEFMIKFWDMDNV-------NLLASIDADGGLQASPCIRFNKEG  654 (1134)
Q Consensus       588 ~~~~~~~~~~~~~v~~~~~-----~~-~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~v~~v~~sp~~  654 (1134)
                      +....+.+|.. .|.+++|     ++ ++++|++|+.|++|++||+.+.       .+...+.  +|...|.+++|+|++
T Consensus        12 ~~~~~l~gH~~-~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~--~h~~~V~~~~~~~~~   88 (343)
T 2xzm_R           12 VKRGILEGHSD-WVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT--GHNHFVSDLALSQEN   88 (343)
T ss_dssp             EEEEEEECCSS-CEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEEC--CCSSCEEEEEECSST
T ss_pred             eeeeeeccchh-hhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhc--cCCCceEEEEECCCC
Confidence            45567888887 8999999     66 8999999999999999999754       3344455  457789999999999


Q ss_pred             cEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCc
Q 001163          655 ILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSR  734 (1134)
Q Consensus       655 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  734 (1134)
                      .++++++.|++|++||+.++ .....+.                                                    
T Consensus        89 ~~l~s~s~D~~v~lwd~~~~-~~~~~~~----------------------------------------------------  115 (343)
T 2xzm_R           89 CFAISSSWDKTLRLWDLRTG-TTYKRFV----------------------------------------------------  115 (343)
T ss_dssp             TEEEEEETTSEEEEEETTSS-CEEEEEE----------------------------------------------------
T ss_pred             CEEEEEcCCCcEEEEECCCC-cEEEEEc----------------------------------------------------
Confidence            99999999999999998765 1111111                                                    


Q ss_pred             cCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCccc
Q 001163          735 NFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTG  814 (1134)
Q Consensus       735 ~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~  814 (1134)
                                                                                                      
T Consensus       116 --------------------------------------------------------------------------------  115 (343)
T 2xzm_R          116 --------------------------------------------------------------------------------  115 (343)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEec---CCCCCeEEE
Q 001163          815 KATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFM---PPPPAATFL  890 (1134)
Q Consensus       815 ~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~---~~~~~v~~l  890 (1134)
                                                +|...|.+++|+|++++|++++ |++|++||+.. .......   +|...|.++
T Consensus       116 --------------------------~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~  168 (343)
T 2xzm_R          116 --------------------------GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCV  168 (343)
T ss_dssp             --------------------------CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEE
T ss_pred             --------------------------CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeee
Confidence                                      1556667777777777777776 67777777753 3333322   578889999


Q ss_pred             EEcCCCC----------cEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCc
Q 001163          891 AFHPQDN----------NIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWE  960 (1134)
Q Consensus       891 ~~sp~~~----------~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~  960 (1134)
                      +|+| ++          .++++++.||.|++|| .+++....+.+|...|.+++|+|+|++|++++.|++|++||+....
T Consensus       169 ~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~  246 (343)
T 2xzm_R          169 RYSP-IMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT  246 (343)
T ss_dssp             EECC-CCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS
T ss_pred             eecc-ccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence            9999 54          7999999999999999 4567778899999999999999999999999999999999995433


Q ss_pred             cccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccce--eec---------cCCCccCEEEEEEc
Q 001163          961 KQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLK--QFV---------PREASGPITHATYS 1029 (1134)
Q Consensus       961 ~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~--~~~---------~~~h~~~v~~~~~s 1029 (1134)
                      ... ..+  ..+     ..+.+++|+|++.+++++.|+.|++||+.+++...  .+.         ..+|...|.+++|+
T Consensus       247 ~~~-~~~--~~~-----~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  318 (343)
T 2xzm_R          247 YPQ-REF--DAG-----STINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWN  318 (343)
T ss_dssp             SCS-EEE--ECS-----SCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEEC
T ss_pred             ccc-eee--cCC-----CcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEEC
Confidence            211 111  111     35899999999999998999999999998877654  222         12678899999999


Q ss_pred             cCCCEEEEEecCCcEEEeecCCCc
Q 001163         1030 CDSQSIYVAFEEGSVGVLTASTLR 1053 (1134)
Q Consensus      1030 ~dg~~l~s~s~Dg~i~vwd~~~~~ 1053 (1134)
                      |||++|++|+.||+|++|++.++.
T Consensus       319 p~g~~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          319 ALGKKLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             SSSCCEEEEETTSEEEEEEEEEEE
T ss_pred             CCCCeEEEecCCceEEEEEEEccC
Confidence            999999999999999999987653

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-36  Score=353.64  Aligned_cols=338  Identities=13%  Similarity=0.206  Sum_probs=269.3

Q ss_pred             ceEEEEEcCCCC-EEEEE----------eCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEE
Q 001163          600 SVGVVQFDTTKN-RFLAA----------GDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKI  668 (1134)
Q Consensus       600 ~v~~~~~~~~~~-~l~~~----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~i  668 (1134)
                      .+.+++|+|++. +++++          +.|+.|++||+.+++....+....+...|.+++|+|++.+|++++.||.|++
T Consensus        14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~v   93 (416)
T 2pm9_A           14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLEL   93 (416)
T ss_dssp             ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEE
T ss_pred             hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEE
Confidence            567889999987 89998          8899999999998863322222234678999999999999999999999999


Q ss_pred             EEccCC---ceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccccc
Q 001163          669 LANADG---IRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIAD  745 (1134)
Q Consensus       669 w~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  745 (1134)
                      |++.+.   ......+                                                                
T Consensus        94 w~~~~~~~~~~~~~~~----------------------------------------------------------------  109 (416)
T 2pm9_A           94 YSTNEANNAINSMARF----------------------------------------------------------------  109 (416)
T ss_dssp             ECCSSTTSCCCEEEEC----------------------------------------------------------------
T ss_pred             eecccccccccchhhc----------------------------------------------------------------
Confidence            998762   1111111                                                                


Q ss_pred             ccccccceeeecccCCccceeccccCCccccccEEEEEEecC-CceeeeeccCCeEEeeecCCCCCCcccccccCCCCcc
Q 001163          746 EAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNS-GLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQL  824 (1134)
Q Consensus       746 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~  824 (1134)
                                                 .+|...|.+++|+|+ +.++++++.|+.|++|++..........         
T Consensus       110 ---------------------------~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~---------  153 (416)
T 2pm9_A          110 ---------------------------SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY---------  153 (416)
T ss_dssp             ---------------------------CCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC---------
T ss_pred             ---------------------------cCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc---------
Confidence                                       127788999999998 8999999999999999887432100000         


Q ss_pred             cCCCCCcccccCCCCCCCCCCeeEEEEcCC-CCeEEEee-CCeEEEEEccCCeEEEEecCC------CCCeEEEEEcCCC
Q 001163          825 WQPPSGILMTNDISDTNPEDAVPCFALSKN-DSYVMSAS-GGKISLFNMMTFKTMTTFMPP------PPAATFLAFHPQD  896 (1134)
Q Consensus       825 ~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d-g~~la~~s-dg~i~lwd~~~~~~~~~~~~~------~~~v~~l~~sp~~  896 (1134)
                           .........  +|...|.+++|+|+ +.++++++ |+.|++||+.+++.+..+..+      ...|.+++|+|++
T Consensus       154 -----~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  226 (416)
T 2pm9_A          154 -----TPLTPGQSM--SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN  226 (416)
T ss_dssp             -----CCBCCCCSC--CSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSC
T ss_pred             -----ccccccccc--CCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCC
Confidence                 000000112  38899999999999 78899988 899999999999999998876      7889999999944


Q ss_pred             CcEEEEEeCCC---cEEEEEcccc-eEEEecc-CccCceEEEEEee-CCCEEEEEeCCCcEEEEECCCCccccceeeeec
Q 001163          897 NNIIAIGMEDS---SIQIYNVRVD-EVKTKLK-GHQKRITGLAFSN-TLNVLVSSGADSQLCVWSTDGWEKQASKFLTIP  970 (1134)
Q Consensus       897 ~~~la~g~~dg---~i~iwd~~~~-~~~~~l~-~h~~~V~~l~~s~-d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~  970 (1134)
                      ..++++++.|+   .|++||+.++ +.+..+. +|...|++++|+| ++++|++++.|+.|++||+.+++     .+...
T Consensus       227 ~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~-----~~~~~  301 (416)
T 2pm9_A          227 STRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE-----QLSQF  301 (416)
T ss_dssp             TTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCC-----EEEEE
T ss_pred             CCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCc-----cceee
Confidence            57999999999   9999999986 6777888 9999999999999 99999999999999999999865     23333


Q ss_pred             CCCCCCCCCceEEEEcCCC-CEEEE-EeeceEEEEeCCCcccceeecc--------------------------------
Q 001163          971 NGRTASALADTRVQFHLDQ-THLLA-VHETQIAIYEAPKLECLKQFVP-------------------------------- 1016 (1134)
Q Consensus       971 ~~~~~~~~~v~~l~fs~dg-~~l~~-~~d~~i~iwd~~~~~~~~~~~~-------------------------------- 1016 (1134)
                      .+|.   ..+.+++|+|++ .+|++ +.|+.|++||+.++........                                
T Consensus       302 ~~~~---~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (416)
T 2pm9_A          302 PARG---NWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQA  378 (416)
T ss_dssp             ECSS---SCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCC
T ss_pred             cCCC---CceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccC
Confidence            3443   468999999999 78888 5899999999987765433210                                


Q ss_pred             -CCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCC
Q 001163         1017 -REASGPITHATYSCDSQSIYVAFEEGSVGVLTASTL 1052 (1134)
Q Consensus      1017 -~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~ 1052 (1134)
                       ..|...+.+++|+|||++|++++.|++|+||++.+.
T Consensus       379 ~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          379 PTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             CSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred             CccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence             115678889999999999999999999999999874

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-34  Score=323.20  Aligned_cols=306  Identities=16%  Similarity=0.195  Sum_probs=231.6

Q ss_pred             CCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC--ceeEEEecCCCCCCcceEEEcCCCcEEEEEECC
Q 001163          586 EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV--NLLASIDADGGLQASPCIRFNKEGILLAVSTND  663 (1134)
Q Consensus       586 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d  663 (1134)
                      +.+.+..+.+|.. .|.+++|+++  +|++++.|+.|++||+..+  +.+..+...+|...|.+++|+|++++|++++.|
T Consensus         3 ~~~~~~~~~~h~~-~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D   79 (330)
T 2hes_X            3 SINLIKSLKLYKE-KIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD   79 (330)
T ss_dssp             CCEEEEEEECCSS-CEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccceeeccCCC-ceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence            4566778888887 8999999987  9999999999999999875  344444332367789999999999999999999


Q ss_pred             CcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccc
Q 001163          664 NGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKI  743 (1134)
Q Consensus       664 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  743 (1134)
                      ++|++|++......  ..                                                              
T Consensus        80 ~~v~iw~~~~~~~~--~~--------------------------------------------------------------   95 (330)
T 2hes_X           80 STVSIWAKEESADR--TF--------------------------------------------------------------   95 (330)
T ss_dssp             SCEEEEEC---------C--------------------------------------------------------------
T ss_pred             CcEEEEEcccCcCc--cc--------------------------------------------------------------
Confidence            99999997532000  00                                                              


Q ss_pred             ccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCc
Q 001163          744 ADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQ  823 (1134)
Q Consensus       744 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~  823 (1134)
                                                                 ...         .+..                     
T Consensus        96 -------------------------------------------~~~---------~~~~---------------------  102 (330)
T 2hes_X           96 -------------------------------------------EMD---------LLAI---------------------  102 (330)
T ss_dssp             -------------------------------------------CCE---------EEEE---------------------
T ss_pred             -------------------------------------------cce---------eEEE---------------------
Confidence                                                       000         0000                     


Q ss_pred             ccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccC----CeEEEEecCCCCCeEEEEEcCCCCc
Q 001163          824 LWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMT----FKTMTTFMPPPPAATFLAFHPQDNN  898 (1134)
Q Consensus       824 ~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~----~~~~~~~~~~~~~v~~l~~sp~~~~  898 (1134)
                                   +.  +|...|.+++|+|+|++|++++ |++|++||+..    .+++..+.+|...|.+++|+| ++.
T Consensus       103 -------------~~--~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~  166 (330)
T 2hes_X          103 -------------IE--GHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEA  166 (330)
T ss_dssp             -------------EC------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSS
T ss_pred             -------------Ec--CCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCC
Confidence                         11  2777888888888888888888 88888888832    356778899999999999999 899


Q ss_pred             EEEEEeCCCcEEEEEcccc--eEEEeccCccCceEEEEEeeC--CCEEEEEeCCCcEEEEECCCCcccc---ceeeeecC
Q 001163          899 IIAIGMEDSSIQIYNVRVD--EVKTKLKGHQKRITGLAFSNT--LNVLVSSGADSQLCVWSTDGWEKQA---SKFLTIPN  971 (1134)
Q Consensus       899 ~la~g~~dg~i~iwd~~~~--~~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~i~iwd~~~~~~~~---~~~~~~~~  971 (1134)
                      +|++|+.|++|++||..++  +++..+.+|.+.|.+++|+|+  +.+|++++.|++|++||+..+....   ........
T Consensus       167 ~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~  246 (330)
T 2hes_X          167 LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILP  246 (330)
T ss_dssp             EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECC
T ss_pred             EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecc
Confidence            9999999999999999876  678899999999999999998  7799999999999999987643211   12222332


Q ss_pred             C-CCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCccc--ceeeccCCCcc-CEEEEEEcc--CCCEEEEEecCCcEE
Q 001163          972 G-RTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLEC--LKQFVPREASG-PITHATYSC--DSQSIYVAFEEGSVG 1045 (1134)
Q Consensus       972 ~-~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~--~~~~~~~~h~~-~v~~~~~s~--dg~~l~s~s~Dg~i~ 1045 (1134)
                      + |.   ..|.+++|++++.++..+.|+.|++||..+++.  .... ..+|.. .|.+++|+|  |+++|++++.||+|+
T Consensus       247 ~~h~---~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~  322 (330)
T 2hes_X          247 DVHK---RQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKR-ALCHGVYEINVVKWLELNGKTILATGGDDGIVN  322 (330)
T ss_dssp             SCCS---SCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEE-SCTTTTSCEEEEEEC-----CCEEEEETTSEEE
T ss_pred             cccc---cceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEecc-ccccccceEEEEEEecCCCceEEEEecCCCcEE
Confidence            2 33   579999999877544447899999999987742  2222 236776 899999999  799999999999999


Q ss_pred             EeecCC
Q 001163         1046 VLTAST 1051 (1134)
Q Consensus      1046 vwd~~~ 1051 (1134)
                      +||+.+
T Consensus       323 ~W~~~~  328 (330)
T 2hes_X          323 FWSLEK  328 (330)
T ss_dssp             EEEC--
T ss_pred             EEEecc
Confidence            999864

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.5e-35  Score=344.39  Aligned_cols=283  Identities=15%  Similarity=0.160  Sum_probs=238.2

Q ss_pred             CeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEe
Q 001163          358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY  437 (1134)
Q Consensus       358 ~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s  437 (1134)
                      .+++++|+|+|++ +++|+.||.|++||+.+++....                   +..| ..+....|+|++++||+|+
T Consensus        58 ~~~~~~~s~~g~~-l~~~~~d~~v~i~d~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~l~~~~  116 (420)
T 3vl1_A           58 AGKGNTFEKVGSH-LYKARLDGHDFLFNTIIRDGSKM-------------------LKRA-DYTAVDTAKLQMRRFILGT  116 (420)
T ss_dssp             CCTTCEEEEEETT-EEEEEETTEEEEEECCSEETTTT-------------------SCSC-CEEEEEEECSSSCEEEEEE
T ss_pred             cccceeeeecCCe-EEEEEcCCcEEEEEecccceeeE-------------------EecC-CceEEEEEecCCCEEEEEE
Confidence            4558999999996 58999999999999988765431                   3344 4555668899999999999


Q ss_pred             CCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccc
Q 001163          438 SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHH  517 (1134)
Q Consensus       438 ~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~  517 (1134)
                      .||.|++||+.+++...   .+.+|.+.|++++|+|+++  +|++++.|+.|++||+.+++.+..+.+|...|.+++|++
T Consensus       117 ~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~  191 (420)
T 3vl1_A          117 TEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID  191 (420)
T ss_dssp             TTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET
T ss_pred             CCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC
Confidence            99999999999887554   5678999999999999999  899999999999999999999999999999999999976


Q ss_pred             cCCccEEEEecCCCcEEEEecCCCCceeeecCC------------------------CCCeeEEEECcCCCEEEEEecCC
Q 001163          518 KENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP------------------------GHSSTMMAYSADGARLFSCGTNK  573 (1134)
Q Consensus       518 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------------------------~~~v~~~~~s~~~~~l~~~~~~~  573 (1134)
                      +  +.+|++++.|+.|++||+.+.+....+..+                        ...+.+++|+|+++++++++.++
T Consensus       192 ~--~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  269 (420)
T 3vl1_A          192 R--GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG  269 (420)
T ss_dssp             T--TTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS
T ss_pred             C--CCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC
Confidence            4  589999999999999999987776666532                        23455566789999999998654


Q ss_pred             CCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCce-eEEEecCCCCCCcceEEEc
Q 001163          574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNVNL-LASIDADGGLQASPCIRFN  651 (1134)
Q Consensus       574 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s  651 (1134)
                          .|++||+.+++....+...+...+.+++|+|++. +|++++.||.|++||+++++. +..+..+ +...+.++.+ 
T Consensus       270 ----~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-~~~~v~~~~~-  343 (420)
T 3vl1_A          270 ----VITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN-EGTPINNVYF-  343 (420)
T ss_dssp             ----CEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES-TTSCEEEEEE-
T ss_pred             ----eEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc-CCCCceEEEe-
Confidence                4999999999988888765555899999999998 999999999999999998754 6666653 2456777755 


Q ss_pred             CCCcEEEEEECCCcEEEEEccCC
Q 001163          652 KEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       652 p~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      +++.+|++++.||.|++|++...
T Consensus       344 ~~~~~l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          344 AAGALFVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             ETTEEEEEETTTEEEEEEEECCT
T ss_pred             CCCCEEEEecCCccEEEEeccCC
Confidence            57889999999999999998764

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.1e-36  Score=349.59  Aligned_cols=357  Identities=10%  Similarity=0.120  Sum_probs=266.6

Q ss_pred             ccCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEEccC---CceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEE
Q 001163          415 SDYTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHG---GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIK  490 (1134)
Q Consensus       415 ~~h~~~V~~l~~sp-d~~~las~s~dg~v~iwd~~~---~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~  490 (1134)
                      .+|.+.|++++|+| ++++||+|+.||+|+|||+.+   +........+ +|...|.+++|+|+++  +|++++.|++|+
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~  136 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQII  136 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEE
Confidence            78999999999999 999999999999999999987   5433222223 5999999999999998  899999999999


Q ss_pred             EEECC---CCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEE--ECcCCCE
Q 001163          491 VWDAV---TGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMA--YSADGAR  565 (1134)
Q Consensus       491 iwd~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~--~s~~~~~  565 (1134)
                      +||+.   +++.+..+.+|  .+..+.+++..                              +...+.++.  +++++.+
T Consensus       137 vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~  184 (437)
T 3gre_A          137 VLKVNHYQQESEVKFLNCE--CIRKINLKNFG------------------------------KNEYAVRMRAFVNEEKSL  184 (437)
T ss_dssp             EEEEEEEEETTEEEEEEEE--EEEEEEGGGGS------------------------------SCCCEEEEEEEECSSCEE
T ss_pred             EEEeccccCCceeeccccc--eeEEEEccCcc------------------------------cccCceEEEEEEcCCCCE
Confidence            99994   77777777666  67777765432                              112233333  6789999


Q ss_pred             EEEEecCCCCCeEEEEEeCCCCeeEEEecC--CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCC
Q 001163          566 LFSCGTNKEGESYLVEWNESEGAVKRTYHG--LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQ  643 (1134)
Q Consensus       566 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  643 (1134)
                      +++++.++    .|++||+++++.+..+.+  |.. .|.+++|+|++++|++++.||.|++||+++++++..+.. .+..
T Consensus       185 l~~~~~d~----~i~iwd~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~  258 (437)
T 3gre_A          185 LVALTNLS----RVIIFDIRTLERLQIIENSPRHG-AVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF-GDHA  258 (437)
T ss_dssp             EEEEETTS----EEEEEETTTCCEEEEEECCGGGC-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC-TTCE
T ss_pred             EEEEeCCC----eEEEEeCCCCeeeEEEccCCCCC-ceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec-CCCC
Confidence            99998644    699999999999999988  444 899999999999999999999999999999999888763 2245


Q ss_pred             CcceEEEc----CCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCC
Q 001163          644 ASPCIRFN----KEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGER  719 (1134)
Q Consensus       644 ~v~~v~~s----p~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  719 (1134)
                      .|.+++|+    +++.+|++++.||.|++||+.++ .....+.++...                                
T Consensus       259 ~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~--------------------------------  305 (437)
T 3gre_A          259 PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG-HCQYAFINSDEQ--------------------------------  305 (437)
T ss_dssp             EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT-EEEEEEESSSSC--------------------------------
T ss_pred             ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC-cEEEEEEcCCCC--------------------------------
Confidence            78999665    46889999999999999999887 555555544322                                


Q ss_pred             CcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCe
Q 001163          720 TAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAV  799 (1134)
Q Consensus       720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~  799 (1134)
                                                                                 +..+.|+|+++.+.    +. 
T Consensus       306 -----------------------------------------------------------~~~~~~~~~~~~l~----~~-  321 (437)
T 3gre_A          306 -----------------------------------------------------------PSMEHFLPIEKGLE----EL-  321 (437)
T ss_dssp             -----------------------------------------------------------CCGGGGSCBCSSGG----GC-
T ss_pred             -----------------------------------------------------------Cccceecccccccc----cc-
Confidence                                                                       11222333333220    00 


Q ss_pred             EEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEE
Q 001163          800 HKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMT  878 (1134)
Q Consensus       800 i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~  878 (1134)
                                                          .+.+..|...|.+++|+ ++++|++++ |+.|++||+.+++...
T Consensus       322 ------------------------------------~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~  364 (437)
T 3gre_A          322 ------------------------------------NFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK  364 (437)
T ss_dssp             ------------------------------------CCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE
T ss_pred             ------------------------------------eecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce
Confidence                                                01111277889999999 778899998 9999999999999988


Q ss_pred             EecCCC---CCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeC--CCEEEEEeCCCcEEE
Q 001163          879 TFMPPP---PAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNT--LNVLVSSGADSQLCV  953 (1134)
Q Consensus       879 ~~~~~~---~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~i~i  953 (1134)
                      .+.+|.   ..+....+++ ...+++..        |+...+.....+..|.+.|++++|+++  +.+|+|++.||.|+|
T Consensus       365 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~i  435 (437)
T 3gre_A          365 AVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGI  435 (437)
T ss_dssp             EEECC--CCCEEEEEEEET-TEEEEEEE--------CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEE
T ss_pred             EEecccccCceEEEEEeec-ceEEEEEe--------cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEE
Confidence            888764   3456666776 55444443        333344455666779999999999998  789999999999999


Q ss_pred             EE
Q 001163          954 WS  955 (1134)
Q Consensus       954 wd  955 (1134)
                      |+
T Consensus       436 w~  437 (437)
T 3gre_A          436 FQ  437 (437)
T ss_dssp             EC
T ss_pred             eC
Confidence            95

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=1.8e-33  Score=364.03  Aligned_cols=530  Identities=11%  Similarity=0.052  Sum_probs=374.3

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC------CeEE
Q 001163          417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED------RVIK  490 (1134)
Q Consensus       417 h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d------~~i~  490 (1134)
                      +...+.+.+|||  +.||.++. +.|++|++.+++..    .+.+|...+.+++|||||+  .|++++.+      ..|+
T Consensus        13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~----~lt~~~~~v~~~~~SPDG~--~la~~s~~~~~~~~~~i~   83 (1045)
T 1k32_A           13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTR----KIVSNLGVINNARFFPDGR--KIAIRVMRGSSLNTADLY   83 (1045)
T ss_dssp             CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEE----EEECSSSEEEEEEECTTSS--EEEEEEEESTTCCEEEEE
T ss_pred             ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEE----EeeeCCCcccCeEECCCCC--EEEEEEeeccCCCCCeEE
Confidence            456889999995  58888776 68999999987643    4778999999999999999  67766543      4899


Q ss_pred             EEECCCCceeEEecCCCcCE-------EEEeccccCCccEEEEecCC------CcEEEEecCCCCceeeecCCCCCeeEE
Q 001163          491 VWDAVTGTKQYIFEGHESPV-------YSICPHHKENIQFIFSTATD------GKIKAWLYDNLGSRVDYDAPGHSSTMM  557 (1134)
Q Consensus       491 iwd~~~~~~~~~~~~h~~~v-------~~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~v~~~  557 (1134)
                      +||+.+++ ...+..|...+       ..++|+++  |+++++++.+      ..|..|++..+.... +..  .....+
T Consensus        84 ~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpD--g~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~-l~~--~~~~~~  157 (1045)
T 1k32_A           84 FYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPD--GNLIISTDAMQPFSSMTCLYRVENDGINFVP-LNL--GPATHI  157 (1045)
T ss_dssp             EEETTTTE-EEECCCCCEEEETTEECSEEEEECTT--CCEEEEECTTSSSTTCCEEEEEEGGGTEEEE-CCS--CSCSEE
T ss_pred             EEECCCCC-eEEcccCCCcccccccccccccCCCC--CEEEEEECCcCCCcccceEEEEECCCCCeEE-ecC--CCccee
Confidence            99988876 67788888888       88998654  4677777754      357777776544322 222  234567


Q ss_pred             EECcCCCEEEEEecCCC--------CCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 001163          558 AYSADGARLFSCGTNKE--------GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN  629 (1134)
Q Consensus       558 ~~s~~~~~l~~~~~~~~--------~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  629 (1134)
                      +|+| | ++++++.+.+        +.....+|....+.....+.+|.. .+..+.|+++ ..+++++.++.+.+|.+..
T Consensus       158 ~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~-~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~  233 (1045)
T 1k32_A          158 LFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMST-HVSSPVIVGH-RIYFITDIDGFGQIYSTDL  233 (1045)
T ss_dssp             EEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSS-CCEEEEEETT-EEEEEECTTSSCEEEEEET
T ss_pred             eeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCC-cccceEEeCC-EEEEEEeccCceEEEEEeC
Confidence            7999 8 7777653211        111234443322233445566665 8899999988 5666777889999998653


Q ss_pred             -CceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhccccccccccc
Q 001163          630 -VNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSA  708 (1134)
Q Consensus       630 -~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  708 (1134)
                       +.....+..+.   .+...+|+|+|+.|+.+. ++.|++|++...  .+..+..+...                     
T Consensus       234 ~g~~~~~l~~~~---~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~--~l~~l~~~~~~---------------------  286 (1045)
T 1k32_A          234 DGKDLRKHTSFT---DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE--KIEKIEIGDLE---------------------  286 (1045)
T ss_dssp             TSCSCEECCCCC---SSCEEEEEESSSCEEEEE-TTEEEEECTTTC--CEEECCCCCCC---------------------
T ss_pred             CCCcceEecCCC---CcceeeEcCCCCEEEEEe-CCEEEEecCCce--EeeeeccCccc---------------------
Confidence             44445554332   456789999999998874 889999998332  22222211000                     


Q ss_pred             ccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEe-cC
Q 001163          709 NANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYT-NS  787 (1134)
Q Consensus       709 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-pd  787 (1134)
                                                              .... |                  ..+...+.+++|+ ||
T Consensus       287 ----------------------------------------~~~~-~------------------~~~~~~v~~~~~S~pd  307 (1045)
T 1k32_A          287 ----------------------------------------SPED-R------------------IISIPSKFAEDFSPLD  307 (1045)
T ss_dssp             ----------------------------------------BCCS-E------------------EEECGGGGEEEEEECG
T ss_pred             ----------------------------------------cccc-c------------------cccccccceeeecCCC
Confidence                                                    0000 0                  0145668899999 99


Q ss_pred             CceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCC-CeeEEEEcCCCCeEEEee-CCe
Q 001163          788 GLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPED-AVPCFALSKNDSYVMSAS-GGK  865 (1134)
Q Consensus       788 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~-~v~~v~~s~dg~~la~~s-dg~  865 (1134)
                      |+.+++++ ++.+.+|++.                      ++....  +..  |.. .+..++|+ ||+.++.++ ++.
T Consensus       308 G~~la~~~-~~~i~~~~~~----------------------~~~~~~--~~~--~~~~~~~~~~~s-dg~~l~~~s~~~~  359 (1045)
T 1k32_A          308 GDLIAFVS-RGQAFIQDVS----------------------GTYVLK--VPE--PLRIRYVRRGGD-TKVAFIHGTREGD  359 (1045)
T ss_dssp             GGCEEEEE-TTEEEEECTT----------------------SSBEEE--CSC--CSCEEEEEECSS-SEEEEEEEETTEE
T ss_pred             CCEEEEEE-cCEEEEEcCC----------------------CCceEE--ccC--CCcceEEeeeEc-CCCeEEEEECCCc
Confidence            99998887 7788888544                      232222  222  556 78999999 999999988 567


Q ss_pred             EE-EEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEE
Q 001163          866 IS-LFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVS  944 (1134)
Q Consensus       866 i~-lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s  944 (1134)
                      +. +||+.+++.. .+.++...+..++|+| |+++||+++.++.|++||+.+++....+.+|.+.+.+++|||||++|++
T Consensus       360 l~~~~d~~~~~~~-~l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~  437 (1045)
T 1k32_A          360 FLGIYDYRTGKAE-KFEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAY  437 (1045)
T ss_dssp             EEEEEETTTCCEE-ECCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEE
T ss_pred             eEEEEECCCCCce-EecCCccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEE
Confidence            88 9999877654 4447778999999999 8999999999999999999999988888789999999999999999998


Q ss_pred             EeCCC----------cEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-eeceEEEEeCCCccc---
Q 001163          945 SGADS----------QLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLEC--- 1010 (1134)
Q Consensus       945 ~s~Dg----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~iwd~~~~~~--- 1010 (1134)
                      ++.++          .|++||+.+++     ...+ ..+.   ..+..++|+|||++|+.+ .++...+|+......   
T Consensus       438 ~~~~~~~~~~~~~~~~i~l~d~~~g~-----~~~l-~~~~---~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~  508 (1045)
T 1k32_A          438 GFPLKHGETDGYVMQAIHVYDMEGRK-----IFAA-TTEN---SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFE  508 (1045)
T ss_dssp             EEEECSSTTCSCCEEEEEEEETTTTE-----EEEC-SCSS---SBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECC
T ss_pred             EecCccccccCCCCCeEEEEECCCCc-----EEEe-eCCC---cccCCceEcCCCCEEEEEecccCCcCcchhccccccc
Confidence            87654          89999998854     2222 2222   347789999999999884 445555555322111   


Q ss_pred             --------------------------------------ceeeccCCCccCEEEEEEccCCCEEEE-------------Ee
Q 001163         1011 --------------------------------------LKQFVPREASGPITHATYSCDSQSIYV-------------AF 1039 (1134)
Q Consensus      1011 --------------------------------------~~~~~~~~h~~~v~~~~~s~dg~~l~s-------------~s 1039 (1134)
                                                            ........|.+.+..++++|||+++++             ..
T Consensus       509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~  588 (1045)
T 1k32_A          509 VVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAP  588 (1045)
T ss_dssp             SCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCC
T ss_pred             cCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccC
Confidence                                                  011111245678999999999998875             12


Q ss_pred             cCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCCCC
Q 001163         1040 EEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAE 1105 (1134)
Q Consensus      1040 ~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~ 1105 (1134)
                      .+..|.+||+.+++.....           ..+..  ++|+| |+++|++++.| .|++||+...+
T Consensus       589 ~~~~l~~~d~~~~~~~~l~-----------~~v~~--~~~S~-DG~~l~~~~~~-~i~~~d~~~~~  639 (1045)
T 1k32_A          589 EKGVLLKYDVKTRKVTEVK-----------NNLTD--LRLSA-DRKTVMVRKDD-GKIYTFPLEKP  639 (1045)
T ss_dssp             CCEEEEEEETTTCCEEEEE-----------EEEEE--EEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred             CCceEEEEECCCCcEEEee-----------cCcce--EEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence            2457888999888753222           12334  47889 79999998877 79999997665

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=6.5e-35  Score=339.08  Aligned_cols=345  Identities=12%  Similarity=0.119  Sum_probs=278.2

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCc
Q 001163          419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT  498 (1134)
Q Consensus       419 ~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~  498 (1134)
                      ..+++++|+|++++|++|+.|+.|++||+.+++...   .+..| ..+....|+++++  +|++|+.|+.|++||+.+++
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~  130 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL  130 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence            345679999999999999999999999998876543   34455 4455667899998  89999999999999999999


Q ss_pred             eeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeE
Q 001163          499 KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESY  578 (1134)
Q Consensus       499 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~  578 (1134)
                      ....+.+|...|.+++|+++  +.+|++++.|+.|++||+.+.+....+..|...|.+++|+|++++|++++.++    .
T Consensus       131 ~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~----~  204 (420)
T 3vl1_A          131 QREIDQAHVSEITKLKFFPS--GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDG----T  204 (420)
T ss_dssp             EEEETTSSSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTS----C
T ss_pred             eeeecccccCccEEEEECCC--CCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCC----c
Confidence            99999999999999999764  58999999999999999999888888888999999999999999999998754    4


Q ss_pred             EEEEeCCCCeeEEEecCCC--CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcE
Q 001163          579 LVEWNESEGAVKRTYHGLG--KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGIL  656 (1134)
Q Consensus       579 i~~wd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~  656 (1134)
                      |++||+++++.+..+..+.  ...+.++++.+.+...                     ...  .+...+.+++|+|++++
T Consensus       205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------------------~~~--~~~~~v~~~~~s~~~~~  261 (420)
T 3vl1_A          205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ---------------------LHE--ISTSKKNNLEFGTYGKY  261 (420)
T ss_dssp             EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS---------------------CGG--GCCCCCCTTCSSCTTEE
T ss_pred             EEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce---------------------eee--cccCcccceEEcCCCCE
Confidence            9999999999999887642  2367777776654221                     011  22457889999999999


Q ss_pred             EEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccC
Q 001163          657 LAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNF  736 (1134)
Q Consensus       657 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  736 (1134)
                      |++++.||.|++||+.++.... .+                                                       
T Consensus       262 l~~~~~dg~i~i~d~~~~~~~~-~~-------------------------------------------------------  285 (420)
T 3vl1_A          262 VIAGHVSGVITVHNVFSKEQTI-QL-------------------------------------------------------  285 (420)
T ss_dssp             EEEEETTSCEEEEETTTCCEEE-EE-------------------------------------------------------
T ss_pred             EEEEcCCCeEEEEECCCCceeE-Ec-------------------------------------------------------
Confidence            9999999999999987651110 00                                                       


Q ss_pred             cccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCccccc
Q 001163          737 TDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKA  816 (1134)
Q Consensus       737 ~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~  816 (1134)
                                                                                                      
T Consensus       286 --------------------------------------------------------------------------------  285 (420)
T 3vl1_A          286 --------------------------------------------------------------------------------  285 (420)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCC-eEEEee-CCeEEEEEccCCeE-EEEecC-CCCCeEEEEE
Q 001163          817 TTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKT-MTTFMP-PPPAATFLAF  892 (1134)
Q Consensus       817 ~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~la~~s-dg~i~lwd~~~~~~-~~~~~~-~~~~v~~l~~  892 (1134)
                                          ..  +|...|.+++|+|+++ +|++++ ||.|++||+.+++. +..+.. |...+.++.+
T Consensus       286 --------------------~~--~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~  343 (420)
T 3vl1_A          286 --------------------PS--KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF  343 (420)
T ss_dssp             --------------------CC--TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE
T ss_pred             --------------------cc--ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe
Confidence                                00  1566777888888887 777777 78888888877643 566665 5667888866


Q ss_pred             cCCCCcEEEEEeCCCcEEEEEcccc---------eEEEeccCccCceEEEEEeeCCC---EEEEEeCCCcEEEEECCC
Q 001163          893 HPQDNNIIAIGMEDSSIQIYNVRVD---------EVKTKLKGHQKRITGLAFSNTLN---VLVSSGADSQLCVWSTDG  958 (1134)
Q Consensus       893 sp~~~~~la~g~~dg~i~iwd~~~~---------~~~~~l~~h~~~V~~l~~s~d~~---~l~s~s~Dg~i~iwd~~~  958 (1134)
                      .  ++++|++++.||.|++|++.+.         .....+.+|.+.|.+++|+|++.   .+++++.+|.+.+|+++.
T Consensus       344 ~--~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          344 A--AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             E--TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             C--CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence            5  5789999999999999998763         12234567889999999999999   788888899999999865

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4.1e-34  Score=354.23  Aligned_cols=296  Identities=20%  Similarity=0.286  Sum_probs=249.9

Q ss_pred             EEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCC
Q 001163          351 MTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD  429 (1134)
Q Consensus       351 ~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd  429 (1134)
                      ..+. |.+.|++++|+|++..+|++|+.||+|+|||+.++......              ....+.+|...|.+++|+|+
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~--------------~~~~~~~h~~~v~~v~~s~~  441 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGV--------------AQRRLTGHSHFVEDVVLSSD  441 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCE--------------EEEEEECCSSCEEEEEECTT
T ss_pred             hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccc--------------ccceecCCCCcEEEEEECCC
Confidence            3444 99999999999988768899999999999999875432110              01126789999999999999


Q ss_pred             CCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEe---cCC
Q 001163          430 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF---EGH  506 (1134)
Q Consensus       430 ~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~---~~h  506 (1134)
                      +++|++|+.||+|+|||+.++....   .+.+|...|.+++|+|+++  +|+||+.|++|++||..........   .+|
T Consensus       442 g~~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h  516 (694)
T 3dm0_A          442 GQFALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGEGH  516 (694)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTTSC
T ss_pred             CCEEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCCCC
Confidence            9999999999999999999987665   6889999999999999999  7999999999999997655433322   468


Q ss_pred             CcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCC
Q 001163          507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE  586 (1134)
Q Consensus       507 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~  586 (1134)
                      ...|.+++|+++.....+++++.|++|++||+........+..|...|.+++|+|++++|++++.|+    .|++||+.+
T Consensus       517 ~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg----~i~iwd~~~  592 (694)
T 3dm0_A          517 RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDG----VVLLWDLAE  592 (694)
T ss_dssp             SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS----BCEEEETTT
T ss_pred             CCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCC----eEEEEECCC
Confidence            9999999998876557899999999999999998888888889999999999999999999998754    599999999


Q ss_pred             CeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCC-----------------CCCCcceEE
Q 001163          587 GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG-----------------GLQASPCIR  649 (1134)
Q Consensus       587 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------------~~~~v~~v~  649 (1134)
                      ++.+..+..+.  .+.+++|+|++.++++++ ++.|++||+.+++.+..+..+.                 +...+.+++
T Consensus       593 ~~~~~~~~~~~--~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  669 (694)
T 3dm0_A          593 GKKLYSLEANS--VIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLN  669 (694)
T ss_dssp             TEEEECCBCSS--CEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEE
T ss_pred             CceEEEecCCC--cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEE
Confidence            99888776543  799999999988777665 5669999999999887765321                 111367899


Q ss_pred             EcCCCcEEEEEECCCcEEEEEcc
Q 001163          650 FNKEGILLAVSTNDNGIKILANA  672 (1134)
Q Consensus       650 ~sp~~~~l~~~~~dg~i~iw~~~  672 (1134)
                      |+|+|++|++|+.||.|++|++.
T Consensus       670 ~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          670 WSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             ECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EcCCCCEEEEEcCCCeEEEEecc
Confidence            99999999999999999999975

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.1e-33  Score=324.14  Aligned_cols=243  Identities=20%  Similarity=0.316  Sum_probs=206.9

Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCC------------------CCEEEEEEecCCCc
Q 001163          416 DYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHV------------------GSVNDLAFSYPNKQ  477 (1134)
Q Consensus       416 ~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~------------------~~V~~v~~s~~~~~  477 (1134)
                      +|.+.|.+++|||||++||+|+ ++.++||++.+++.+.   .+.+|.                  ..|.+++|+|+|+ 
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-  136 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA---RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK-  136 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE---EECC-----------------CCCCBEEEEEECTTSS-
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE---EecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence            5999999999999999999986 6789999999988655   333332                  3499999999999 


Q ss_pred             eEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEE
Q 001163          478 LSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMM  557 (1134)
Q Consensus       478 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~  557 (1134)
                       +|++|+.|++|++||+.+++.+..+.+|...|.+++|+++  +.+|++++.|++|++||+.+.+....+. +...+.++
T Consensus       137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~--~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~  212 (393)
T 1erj_A          137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS--GDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV  212 (393)
T ss_dssp             -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred             -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCC--CCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence             8999999999999999999999999999999999999654  4899999999999999999877666554 34578999


Q ss_pred             EECc-CCCEEEEEecCCCCCeEEEEEeCCCCeeEEEe-------cCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 001163          558 AYSA-DGARLFSCGTNKEGESYLVEWNESEGAVKRTY-------HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN  629 (1134)
Q Consensus       558 ~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  629 (1134)
                      +|+| +++++++++.++    .|++||+.+++.+..+       .+|.. .|.+++|+|++++|++++.||.|++||+.+
T Consensus       213 ~~~~~~~~~l~~~s~d~----~v~iwd~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~  287 (393)
T 1erj_A          213 AVSPGDGKYIAAGSLDR----AVRVWDSETGFLVERLDSENESGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWNLQN  287 (393)
T ss_dssp             EECSTTCCEEEEEETTS----CEEEEETTTCCEEEEEC------CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             EEECCCCCEEEEEcCCC----cEEEEECCCCcEEEeecccccCCCCCCC-CEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            9999 899999998754    4999999999888776       34554 899999999999999999999999999976


Q ss_pred             Cc------------eeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163          630 VN------------LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       630 ~~------------~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      ..            ....+.  +|...|.+++|+|++.+|++++.||.|++||..++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~  342 (393)
T 1erj_A          288 ANNKSDSKTPNSGTCEVTYI--GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG  342 (393)
T ss_dssp             -------------CEEEEEE--CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred             CCCcccccCCCCCcceEEEe--cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence            43            333444  44678999999999999999999999999999877

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.3e-33  Score=330.59  Aligned_cols=341  Identities=18%  Similarity=0.287  Sum_probs=266.6

Q ss_pred             cccCCCCE-EEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEE
Q 001163          414 SSDYTASV-NRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW  492 (1134)
Q Consensus       414 ~~~h~~~V-~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  492 (1134)
                      +.+|...| .++.|  ++++|++|+.||+|++||+.+++.+.   .+.+|.+.|.+++|++++   .+++|+.|++|++|
T Consensus       117 l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~---~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~vw  188 (464)
T 3v7d_B          117 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVW  188 (464)
T ss_dssp             EECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECSTT---EEEEEETTSCEEEE
T ss_pred             EcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE---EEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEEE
Confidence            67888885 55555  67899999999999999999988665   688999999999999887   59999999999999


Q ss_pred             ECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecC
Q 001163          493 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN  572 (1134)
Q Consensus       493 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~  572 (1134)
                      |+.+++++..+.+|...|.+++|.+.+++.++++++.|+.|++||+............. ....+.+.|++         
T Consensus       189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~---------  258 (464)
T 3v7d_B          189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH-DYPLVFHTPEE---------  258 (464)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------C-CSSEEESCGGG---------
T ss_pred             ECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccC-CcceEeeccCC---------
Confidence            99999999999999999999999887888999999999999999998655443222111 11111122211         


Q ss_pred             CCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcC
Q 001163          573 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK  652 (1134)
Q Consensus       573 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp  652 (1134)
                                   .......+.+|.. .+.++  +++++++++++.||.|++||+.+++.+..+..|  ...|.+++|+|
T Consensus       259 -------------~~~~~~~~~~~~~-~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~  320 (464)
T 3v7d_B          259 -------------NPYFVGVLRGHMA-SVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH--TDRIYSTIYDH  320 (464)
T ss_dssp             -------------CTTEEEEECCCSS-CEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEEET
T ss_pred             -------------CeEEEEEccCccc-eEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CCCEEEEEEcC
Confidence                         1223445555554 55554  678899999999999999999999999988755  67899999999


Q ss_pred             CCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCC
Q 001163          653 EGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSND  732 (1134)
Q Consensus       653 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  732 (1134)
                      +++++++++.||.|++||+.++ ..+..+.                                                  
T Consensus       321 ~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~--------------------------------------------------  349 (464)
T 3v7d_B          321 ERKRCISASMDTTIRIWDLENG-ELMYTLQ--------------------------------------------------  349 (464)
T ss_dssp             TTTEEEEEETTSCEEEEETTTT-EEEEEEC--------------------------------------------------
T ss_pred             CCCEEEEEeCCCcEEEEECCCC-cEEEEEe--------------------------------------------------
Confidence            9999999999999999998765 2221111                                                  


Q ss_pred             CccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCc
Q 001163          733 SRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNS  812 (1134)
Q Consensus       733 ~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~  812 (1134)
                                                                                                      
T Consensus       350 --------------------------------------------------------------------------------  349 (464)
T 3v7d_B          350 --------------------------------------------------------------------------------  349 (464)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEE
Q 001163          813 TGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLA  891 (1134)
Q Consensus       813 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~  891 (1134)
                                                  +|...|.+++++  ++++++++ ||+|++||+.++....... +...+..++
T Consensus       350 ----------------------------~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~  398 (464)
T 3v7d_B          350 ----------------------------GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITT  398 (464)
T ss_dssp             ----------------------------CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEE
T ss_pred             ----------------------------CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEE
Confidence                                        155666677765  46777776 7888888887776665554 566788899


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEEcccceEEEe-ccCccCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 001163          892 FHPQDNNIIAIGMEDSSIQIYNVRVDEVKTK-LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS  955 (1134)
Q Consensus       892 ~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~-l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd  955 (1134)
                      |++ +++++++|+ ||.|++||+.+++.+.. +..|.+.|.+++|+ +..++++++.|+.+.+|-
T Consensus       399 ~~~-~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~  460 (464)
T 3v7d_B          399 FYV-SDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI  460 (464)
T ss_dssp             EEE-CSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred             EEe-CCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence            999 889999998 89999999999999886 77899999999997 445555666777665553

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.2e-33  Score=315.91  Aligned_cols=299  Identities=17%  Similarity=0.231  Sum_probs=239.3

Q ss_pred             CCCCeeEEEecCCCCCceEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCc-----eeEEEecCCCCCCcceEEEcCCCcEE
Q 001163          584 ESEGAVKRTYHGLGKRSVGVVQFDTT-KNRFLAAGDEFMIKFWDMDNVN-----LLASIDADGGLQASPCIRFNKEGILL  657 (1134)
Q Consensus       584 ~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~v~~v~~sp~~~~l  657 (1134)
                      .++.++..++.+|.. .|++++|+|+ +++|++|+.||+|++||+.+.+     +...+.  +|...|.+++|+|++++|
T Consensus        25 ~~~~~l~~tL~GH~~-~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~--~h~~~V~~~~~s~dg~~l  101 (340)
T 4aow_A           25 TEQMTLRGTLKGHNG-WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR--GHSHFVSDVVISSDGQFA  101 (340)
T ss_dssp             -CEEEEEEEECCCSS-CEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEEC--CCSSCEEEEEECTTSSEE
T ss_pred             CCceEEEEEECCccC-CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEe--CCCCCEEEEEECCCCCEE
Confidence            344566778999987 9999999998 5899999999999999998654     334444  457789999999999999


Q ss_pred             EEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCc
Q 001163          658 AVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFT  737 (1134)
Q Consensus       658 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  737 (1134)
                      ++++.|+.|++|+..... ......                                                       
T Consensus       102 ~s~~~d~~i~~~~~~~~~-~~~~~~-------------------------------------------------------  125 (340)
T 4aow_A          102 LSGSWDGTLRLWDLTTGT-TTRRFV-------------------------------------------------------  125 (340)
T ss_dssp             EEEETTSEEEEEETTTTE-EEEEEE-------------------------------------------------------
T ss_pred             EEEcccccceEEeecccc-eeeeec-------------------------------------------------------
Confidence            999999999999976541 110000                                                       


Q ss_pred             ccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccc
Q 001163          738 DVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKAT  817 (1134)
Q Consensus       738 ~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  817 (1134)
                                                                                                      
T Consensus       126 --------------------------------------------------------------------------------  125 (340)
T 4aow_A          126 --------------------------------------------------------------------------------  125 (340)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEE-EEecCCCCCeEEEEEcCC
Q 001163          818 TNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM-TTFMPPPPAATFLAFHPQ  895 (1134)
Q Consensus       818 ~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~-~~~~~~~~~v~~l~~sp~  895 (1134)
                                             .+...+..+.+++++.+|++++ |+.+++||....... ....+|...+.+++|+++
T Consensus       126 -----------------------~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~  182 (340)
T 4aow_A          126 -----------------------GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPN  182 (340)
T ss_dssp             -----------------------CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSC
T ss_pred             -----------------------CCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccC
Confidence                                   0233445556666777777776 677777777654433 335678889999999983


Q ss_pred             C-CcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCC
Q 001163          896 D-NNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRT  974 (1134)
Q Consensus       896 ~-~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  974 (1134)
                      . ..++++++.|+.|++||+.+++.+..+.+|.+.|++++|+|++++|++++.|++|++||+.+.+.     +.....+ 
T Consensus       183 ~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~-----~~~~~~~-  256 (340)
T 4aow_A          183 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH-----LYTLDGG-  256 (340)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE-----EEEEECS-
T ss_pred             CCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCce-----eeeecCC-
Confidence            2 35788999999999999999999999999999999999999999999999999999999998652     2333333 


Q ss_pred             CCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeec-------cCCCccCEEEEEEccCCCEEEEEecCCcEEEe
Q 001163          975 ASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFV-------PREASGPITHATYSCDSQSIYVAFEEGSVGVL 1047 (1134)
Q Consensus       975 ~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~-------~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vw 1047 (1134)
                         ..+.+++|+|++.+++++.|+.|++||++++..+..+.       ..+|...|++++|+|||++|++|+.||+|+||
T Consensus       257 ---~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW  333 (340)
T 4aow_A          257 ---DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW  333 (340)
T ss_dssp             ---SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             ---ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence               35899999999999888999999999999887665543       23688999999999999999999999999999


Q ss_pred             ecCCCc
Q 001163         1048 TASTLR 1053 (1134)
Q Consensus      1048 d~~~~~ 1053 (1134)
                      |+.+|+
T Consensus       334 ~~~tGt  339 (340)
T 4aow_A          334 QVTIGT  339 (340)
T ss_dssp             EEEC--
T ss_pred             eCCCcC
Confidence            999985

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=5.5e-33  Score=325.07  Aligned_cols=321  Identities=16%  Similarity=0.267  Sum_probs=274.1

Q ss_pred             ecCCCe-eEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCE
Q 001163          354 NQGSAV-KSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL  432 (1134)
Q Consensus       354 ~h~~~V-~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~  432 (1134)
                      +|.+.| ++  ++++|+ ++++|+.||+|++||+.+++.+..                   +.+|.+.|.+++|+  +++
T Consensus       116 ~h~~~v~~~--~~~~g~-~l~sg~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~--~~~  171 (445)
T 2ovr_B          116 GHDDHVITC--LQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQMR--DNI  171 (445)
T ss_dssp             CSTTSCEEE--EEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEEE--TTE
T ss_pred             ccCCCcEEE--EEEcCC-EEEEEECCCcEEEEECCCCcEEEE-------------------EcCCCCCEEEEEec--CCE
Confidence            377664 55  455677 568999999999999999887653                   67899999999997  679


Q ss_pred             EEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEE
Q 001163          433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS  512 (1134)
Q Consensus       433 las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~  512 (1134)
                      |++|+.||+|++||+.+++.+.   .+.+|...|.+++|+  ++  .+++|+.|++|++||+.+++.+..+.+|...|.+
T Consensus       172 l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~  244 (445)
T 2ovr_B          172 IISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC  244 (445)
T ss_dssp             EEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEE
T ss_pred             EEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEE
Confidence            9999999999999999988665   678999999999996  45  6999999999999999999999999999999999


Q ss_pred             EeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEE
Q 001163          513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRT  592 (1134)
Q Consensus       513 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~  592 (1134)
                      +++    ++.++++++.||.|++||+.+......+..+...|.++.|  ++.++++++.++    .|++||+.+++.+..
T Consensus       245 ~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~----~i~i~d~~~~~~~~~  314 (445)
T 2ovr_B          245 VQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDT----SIRVWDVETGNCIHT  314 (445)
T ss_dssp             EEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTS----CEEEEETTTCCEEEE
T ss_pred             EEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCC----eEEEEECCCCCEEEE
Confidence            987    3478999999999999999988888888888889999999  889999998754    499999999999999


Q ss_pred             ecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecC-CCCCCcceEEEcCCCcEEEEEECCCcEEEEEc
Q 001163          593 YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD-GGLQASPCIRFNKEGILLAVSTNDNGIKILAN  671 (1134)
Q Consensus       593 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~  671 (1134)
                      +.+|.. .+.++.+  +++++++++.||.|++||+.+++.+..+..+ .+...|.+++|+  ++++++++.||.|++|++
T Consensus       315 ~~~~~~-~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~  389 (445)
T 2ovr_B          315 LTGHQS-LTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDL  389 (445)
T ss_dssp             ECCCCS-CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred             EcCCcc-cEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEEC
Confidence            998876 6776666  5679999999999999999999999988753 256789999996  679999999999999999


Q ss_pred             cCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccccccccccc
Q 001163          672 ADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKS  751 (1134)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  751 (1134)
                      .++ ..+..+...                                                                   
T Consensus       390 ~~~-~~~~~~~~~-------------------------------------------------------------------  401 (445)
T 2ovr_B          390 KTG-EFIRNLVTL-------------------------------------------------------------------  401 (445)
T ss_dssp             TTC-CEEEEEEEC-------------------------------------------------------------------
T ss_pred             CCC-ceeeeeecc-------------------------------------------------------------------
Confidence            887 333333110                                                                   


Q ss_pred             ceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCe----EEeeecCC
Q 001163          752 RIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAV----HKLWKWPR  807 (1134)
Q Consensus       752 ~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~----i~vw~~~~  807 (1134)
                                         ....+...|.+++|+|++..+++++.||.    +.|||+..
T Consensus       402 -------------------~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          402 -------------------ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             -------------------TTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             -------------------ccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence                               00126788999999999999999999997    99998764

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-35  Score=347.96  Aligned_cols=268  Identities=9%  Similarity=0.050  Sum_probs=199.4

Q ss_pred             cCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCC------CCEEEEEeC
Q 001163          365 HPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD------GTLFGVAYS  438 (1134)
Q Consensus       365 sp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd------~~~las~s~  438 (1134)
                      +|+++ ++|+|+.|++|+|||+.+++.....               ...+.+|.+.|.+++|+|+      +.+||+|+.
T Consensus       170 ~~~~~-~laS~s~D~tI~iWd~~~~~~~~~~---------------~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~  233 (524)
T 2j04_B          170 NEHLE-MFDKEKHSSCIQIFKMNTSTLHCVK---------------VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQ  233 (524)
T ss_dssp             -------------CEEEEEEEEETTTCCEEE---------------EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEET
T ss_pred             chhhh-hhccCCCCceEEEEEccCCCCCceE---------------EEEEEecCCcEEEEEECCCCCCCCCCceEEEEec
Confidence            44554 3466778999999999877642210               0014568899999999997      579999999


Q ss_pred             CCEEEEEEccCCcee--------eeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCc-eeEEecCCCcC
Q 001163          439 KHIVHLYTYHGGDEL--------RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-KQYIFEGHESP  509 (1134)
Q Consensus       439 dg~v~iwd~~~~~~~--------~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~h~~~  509 (1134)
                      ||+|+|||+.++...        .....+.+|...|++++|++++   .|++|+.||+|++||+.++. +...+.+|...
T Consensus       234 DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~---~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~  310 (524)
T 2j04_B          234 EGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT---TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSY  310 (524)
T ss_dssp             TSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS---EEEEEETTSEEEEEETTBCSSCSEEEECSSSC
T ss_pred             CCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC---eEEEEeCCCEEEEEECCCCCCceEEeeccccc
Confidence            999999999876422        1123578899999999999864   59999999999999999774 45678999999


Q ss_pred             EEEEeccccCCc-cEEEEecCCCcEEEEecCCCCceeeecCCC--CCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCC
Q 001163          510 VYSICPHHKENI-QFIFSTATDGKIKAWLYDNLGSRVDYDAPG--HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE  586 (1134)
Q Consensus       510 v~~~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~  586 (1134)
                      |.++++...+++ .+|++++.|++|++||+++......+..+.  ..|.+++|+|+++.+++++.+    ..|++||+++
T Consensus       311 V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d----~tv~lwd~~~  386 (524)
T 2j04_B          311 ILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGA----SSLRAVPSRA  386 (524)
T ss_dssp             EEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSS----SEEEEEETTC
T ss_pred             EEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCC----CcEEEEECcc
Confidence            999954335555 799999999999999998766555444433  357899999999999988653    3699999999


Q ss_pred             CeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecC---CCCCCcceEEEcCCCcEE
Q 001163          587 GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD---GGLQASPCIRFNKEGILL  657 (1134)
Q Consensus       587 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~v~~sp~~~~l  657 (1134)
                      +.++..+.+|.. .|.+++|+|+++.|++|+.||+|++||...+ .+......   .....+.+++|+|++..+
T Consensus       387 ~~~~~~l~gH~~-~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~  458 (524)
T 2j04_B          387 AFAVHPLVSRET-TITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKY  458 (524)
T ss_dssp             TTCCEEEEECSS-CEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEE
T ss_pred             cccceeeecCCC-ceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeE
Confidence            998888888876 9999999999999999999999999998654 22211100   011135678888888743

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=6.6e-34  Score=325.90  Aligned_cols=295  Identities=13%  Similarity=0.171  Sum_probs=243.0

Q ss_pred             eeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEE
Q 001163          348 TVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW  426 (1134)
Q Consensus       348 ~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  426 (1134)
                      .....+. |...|++++|+|+|..++++|+.||.|+|||+.+++.....                 ...+|...|.+++|
T Consensus        64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----------------~~~~h~~~v~~~~~  126 (383)
T 3ei3_B           64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI-----------------QGMGPGDAITGMKF  126 (383)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE-----------------CCCSTTCBEEEEEE
T ss_pred             ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceee-----------------ecCCcCCceeEEEe
Confidence            3344544 89999999999999447899999999999999988765421                 13479999999999


Q ss_pred             cC-CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecC
Q 001163          427 SP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG  505 (1134)
Q Consensus       427 sp-d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  505 (1134)
                      +| ++++|++++.|+.|++||+.+. .+.......+|...|.+++|+|+++  +|++++.|+.|++||+ +++.+..+.+
T Consensus       127 ~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~-~~~~~~~~~~  202 (383)
T 3ei3_B          127 NQFNTNQLFVSSIRGATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGL-DGHEIFKEKL  202 (383)
T ss_dssp             ETTEEEEEEEEETTTEEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEET-TSCEEEEEEC
T ss_pred             CCCCCCEEEEEeCCCEEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEEC-CCCEEEEecc
Confidence            99 7899999999999999999963 3443333445668999999999999  8999999999999998 6889999999


Q ss_pred             CCcCEEEEeccccCCcc-EEEEecCCCcEEEEecCCC----CceeeecCCCCCeeEEEECc-CCCEEEEEecCCCCCeEE
Q 001163          506 HESPVYSICPHHKENIQ-FIFSTATDGKIKAWLYDNL----GSRVDYDAPGHSSTMMAYSA-DGARLFSCGTNKEGESYL  579 (1134)
Q Consensus       506 h~~~v~~~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i  579 (1134)
                      |...|.+++|+++.  . ++++++.|+.|++||+...    .....+ .+...|.+++|+| ++++|++++.+    +.|
T Consensus       203 h~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d----~~i  275 (383)
T 3ei3_B          203 HKAKVTHAEFNPRC--DWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQR----NEI  275 (383)
T ss_dssp             SSSCEEEEEECSSC--TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESS----SEE
T ss_pred             CCCcEEEEEECCCC--CCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCC----CcE
Confidence            99999999997654  5 8999999999999999873    333333 5778999999999 99999999764    469


Q ss_pred             EEEeCCCCeeEEEecCCCC----------------CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCC
Q 001163          580 VEWNESEGAVKRTYHGLGK----------------RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQ  643 (1134)
Q Consensus       580 ~~wd~~~~~~~~~~~~~~~----------------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  643 (1134)
                      ++||+.+++....+.++..                ..+..++|+|++.+  +++.||.|++||+.+++.+..+..+.+..
T Consensus       276 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~  353 (383)
T 3ei3_B          276 RVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAG  353 (383)
T ss_dssp             EEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCS
T ss_pred             EEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCc
Confidence            9999999877666654431                13334566666655  66789999999999999999998765566


Q ss_pred             CcceEEEcCCCcEEEEEECCCcEEEEEccC
Q 001163          644 ASPCIRFNKEGILLAVSTNDNGIKILANAD  673 (1134)
Q Consensus       644 ~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~  673 (1134)
                      .+.+++|+|++++|++++ ||.|++|++++
T Consensus       354 ~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          354 IISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             CCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             eEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            788889999999999997 89999999864

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.1e-35  Score=341.87  Aligned_cols=350  Identities=7%  Similarity=0.012  Sum_probs=247.5

Q ss_pred             CCCCEEEEEEcCCC---------CEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCC
Q 001163          417 YTASVNRVMWSPDG---------TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR  487 (1134)
Q Consensus       417 h~~~V~~l~~spd~---------~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~  487 (1134)
                      +.+.|.+|+|+|++         ++||+|+.++..                          ...+|+++  .+++++.|+
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~--~laS~s~D~  183 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLE--MFDKEKHSS  183 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhh--hhccCCCCc
Confidence            57899999999987         799999876420                          01368888  789999999


Q ss_pred             eEEEEECCCCcee----EEecCCCcCEEEEecccc----CCccEEEEecCCCcEEEEecCCCCce-----------eeec
Q 001163          488 VIKVWDAVTGTKQ----YIFEGHESPVYSICPHHK----ENIQFIFSTATDGKIKAWLYDNLGSR-----------VDYD  548 (1134)
Q Consensus       488 ~i~iwd~~~~~~~----~~~~~h~~~v~~~~~~~~----~~~~~l~s~s~dg~i~vwd~~~~~~~-----------~~~~  548 (1134)
                      +|+|||+.+++..    ..+.+|.+.|.+++|+|.    +++.+|++++.||+|++||+......           ..+.
T Consensus       184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~  263 (524)
T 2j04_B          184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS  263 (524)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred             eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence            9999999887653    456778899999999886    34679999999999999999765321           2456


Q ss_pred             CCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCe-eEEEecCCCCCceEEE--EEcCCC-CEEEEEeCCCeEEE
Q 001163          549 APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA-VKRTYHGLGKRSVGVV--QFDTTK-NRFLAAGDEFMIKF  624 (1134)
Q Consensus       549 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~dg~i~i  624 (1134)
                      .+...|.+++|++++ .|++++.|    +.|++||++++. +...+.+|.. .|.++  +|++++ .+|++++.|++|++
T Consensus       264 ~h~~~v~sv~~s~~~-~lasgs~D----gtV~lWD~~~~~~~~~~~~~H~~-~V~sv~~~~s~~g~~~laS~S~D~tvkl  337 (524)
T 2j04_B          264 LADSLITTFDFLSPT-TVVCGFKN----GFVAEFDLTDPEVPSFYDQVHDS-YILSVSTAYSDFEDTVVSTVAVDGYFYI  337 (524)
T ss_dssp             CTTTCEEEEEESSSS-EEEEEETT----SEEEEEETTBCSSCSEEEECSSS-CEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred             cCCCCEEEEEecCCC-eEEEEeCC----CEEEEEECCCCCCceEEeecccc-cEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence            677899999999865 78888764    469999999774 4556788876 89998  578887 89999999999999


Q ss_pred             EEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhccccccc
Q 001163          625 WDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGT  704 (1134)
Q Consensus       625 wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  704 (1134)
                      ||+++++.+..+..+.....|.+++|+|++..+++++.|++|++||+.++. ....+.                      
T Consensus       338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~-~~~~l~----------------------  394 (524)
T 2j04_B          338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF-AVHPLV----------------------  394 (524)
T ss_dssp             ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT-CCEEEE----------------------
T ss_pred             EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc-cceeee----------------------
Confidence            999998877776654332357899999999999999999999999987652 111111                      


Q ss_pred             ccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEE
Q 001163          705 FGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIY  784 (1134)
Q Consensus       705 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  784 (1134)
                                                                                           +|...|.+++|
T Consensus       395 ---------------------------------------------------------------------gH~~~V~sva~  405 (524)
T 2j04_B          395 ---------------------------------------------------------------------SRETTITAIGV  405 (524)
T ss_dssp             ---------------------------------------------------------------------ECSSCEEEEEC
T ss_pred             ---------------------------------------------------------------------cCCCceEEEEe
Confidence                                                                                 27788999999


Q ss_pred             ecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCC
Q 001163          785 TNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGG  864 (1134)
Q Consensus       785 spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg  864 (1134)
                      +|+|+.|++++.||.+++|++....               +....+      .....+...+..++|+|+|+.+..  ++
T Consensus       406 Sp~g~~l~Sgs~Dgtv~lwd~~~~~---------------~~~~~~------~~~~~~~~~v~~v~~sp~g~~~~~--~~  462 (524)
T 2j04_B          406 SRLHPMVLAGSADGSLIITNAARRL---------------LHGIKN------SSATQKSLRLWKWDYSIKDDKYRI--DS  462 (524)
T ss_dssp             CSSCCBCEEEETTTEEECCBSCSST---------------TTCC------------CCCCEEEECBCCSSSCEEEE--CC
T ss_pred             CCCCCeEEEEECCCEEEEEechHhh---------------cccccc------CccceeeeEEEEeccCCCCCeEEc--cC
Confidence            9999999999999999999764311               000000      000002235778999999986533  22


Q ss_pred             eEEEEEcc-CCeEEEEecCCCCCeEEEEEcCCC---CcEEEEEeCCCcEEEEEccc
Q 001163          865 KISLFNMM-TFKTMTTFMPPPPAATFLAFHPQD---NNIIAIGMEDSSIQIYNVRV  916 (1134)
Q Consensus       865 ~i~lwd~~-~~~~~~~~~~~~~~v~~l~~sp~~---~~~la~g~~dg~i~iwd~~~  916 (1134)
                      .+.+|+.. ++.++..+.+|...|.+++|+| +   +.++|+|+.||.|+||++..
T Consensus       463 ~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp-~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          463 SYEVYPLTVNDVSKAKIDAHGINITCTKWNE-TSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             CCCCCC-------------CCCSCCCEEECC-STTTTTEEEEECTTSEEEEEECSC
T ss_pred             CceecccccCCcceeeecCCCceEEEEECCC-CCCccHHHHhhccCceEEEEEccc
Confidence            33344432 5678888999999999999999 6   45999999999999999863

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=8.1e-33  Score=325.92  Aligned_cols=347  Identities=15%  Similarity=0.220  Sum_probs=271.6

Q ss_pred             eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEE
Q 001163          588 AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIK  667 (1134)
Q Consensus       588 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~  667 (1134)
                      .....+.+|....+.++.+  +++++++|+.||.|++||+.+++.+..+..|  ...|.+++|+|++ ++++++.||+|+
T Consensus       112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h--~~~V~~l~~~~~~-~l~s~s~dg~i~  186 (464)
T 3v7d_B          112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGH--DGGVWALKYAHGG-ILVSGSTDRTVR  186 (464)
T ss_dssp             CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECSTT-EEEEEETTSCEE
T ss_pred             cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCC--CcCEEEEEEcCCC-EEEEEeCCCCEE
Confidence            3456788888755666665  5679999999999999999999999988855  7799999999988 999999999999


Q ss_pred             EEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccccccc
Q 001163          668 ILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEA  747 (1134)
Q Consensus       668 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  747 (1134)
                      +||+.++ .....+.                                                                 
T Consensus       187 vwd~~~~-~~~~~~~-----------------------------------------------------------------  200 (464)
T 3v7d_B          187 VWDIKKG-CCTHVFE-----------------------------------------------------------------  200 (464)
T ss_dssp             EEETTTT-EEEEEEC-----------------------------------------------------------------
T ss_pred             EEECCCC-cEEEEEC-----------------------------------------------------------------
Confidence            9999877 3333332                                                                 


Q ss_pred             ccccceeeecccCCccceeccccCCccccccEEEEEEe--cCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCccc
Q 001163          748 VEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYT--NSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLW  825 (1134)
Q Consensus       748 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s--pdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  825 (1134)
                                                +|...|.+++|+  +++..+++++.||.+++|++...................+
T Consensus       201 --------------------------~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  254 (464)
T 3v7d_B          201 --------------------------GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH  254 (464)
T ss_dssp             --------------------------CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEES
T ss_pred             --------------------------CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEee
Confidence                                      266788899988  5789999999999999999886532211110000000011


Q ss_pred             CCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEe
Q 001163          826 QPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGM  904 (1134)
Q Consensus       826 d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~  904 (1134)
                      ...........+.+  |...+.++  +++++++++++ |+.|++||+.+++++..+.+|...|.+++|+| +++++++|+
T Consensus       255 ~~~~~~~~~~~~~~--~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~  329 (464)
T 3v7d_B          255 TPEENPYFVGVLRG--HMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISAS  329 (464)
T ss_dssp             CGGGCTTEEEEECC--CSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEE
T ss_pred             ccCCCeEEEEEccC--ccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC-CCCEEEEEe
Confidence            11111111112333  77777776  67899999998 99999999999999999999999999999999 899999999


Q ss_pred             CCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEE
Q 001163          905 EDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQ  984 (1134)
Q Consensus       905 ~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~  984 (1134)
                      .||.|++||+.+++.+..+.+|...|.+++|+  +.+|++++.||+|++||+.+++.    .......     ..+..++
T Consensus       330 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~----~~~~~~~-----~~~~~~~  398 (464)
T 3v7d_B          330 MDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSR----KFSYHHT-----NLSAITT  398 (464)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE----EEEEECT-----TCCCEEE
T ss_pred             CCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCce----eeeecCC-----CCccEEE
Confidence            99999999999999999999999999999997  68999999999999999988552    2222221     3477899


Q ss_pred             EcCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeec
Q 001163          985 FHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTA 1049 (1134)
Q Consensus       985 fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~ 1049 (1134)
                      |++++++++++.|+.|++||+.+++.+..... .|...|.+++|+ ++.++++++.||.+.+|-+
T Consensus       399 ~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~-~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l  461 (464)
T 3v7d_B          399 FYVSDNILVSGSENQFNIYNLRSGKLVHANIL-KDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL  461 (464)
T ss_dssp             EEECSSEEEEEETTEEEEEETTTCCEEESCTT-TTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred             EEeCCCEEEEecCCeEEEEECCCCcEEehhhc-cCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence            99999999998899999999999999876442 678999999997 4455666677776665543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.1e-32  Score=322.59  Aligned_cols=317  Identities=21%  Similarity=0.344  Sum_probs=269.2

Q ss_pred             eeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEe
Q 001163          458 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWL  537 (1134)
Q Consensus       458 ~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd  537 (1134)
                      .+.+|.+.|.. +++++++  +|++|+.||+|++||+.+++.+..+.+|...|.+++++    +.++++++.||+|++||
T Consensus       113 ~l~~h~~~v~~-~~~~~g~--~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~~~dg~i~vwd  185 (445)
T 2ovr_B          113 VLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR----DNIIISGSTDRTLKVWN  185 (445)
T ss_dssp             EEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE----TTEEEEEETTSCEEEEE
T ss_pred             EecccCCCcEE-EEEEcCC--EEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec----CCEEEEEeCCCeEEEEE
Confidence            57899987533 3455677  89999999999999999999999999999999999985    26899999999999999


Q ss_pred             cCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe
Q 001163          538 YDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG  617 (1134)
Q Consensus       538 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  617 (1134)
                      +.+++....+..+...|.++.++  ++.+++++.+    +.|++||+.+++.+..+.+|.. .+.++++  +++++++++
T Consensus       186 ~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~d----g~i~~wd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~  256 (445)
T 2ovr_B          186 AETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRD----ATLRVWDIETGQCLHVLMGHVA-AVRCVQY--DGRRVVSGA  256 (445)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETT----SEEEEEESSSCCEEEEEECCSS-CEEEEEE--CSSCEEEEE
T ss_pred             CCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCC----CEEEEEECCCCcEEEEEcCCcc-cEEEEEE--CCCEEEEEc
Confidence            99888888888888899999885  5678888764    4699999999999999988876 8888888  678999999


Q ss_pred             CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhh
Q 001163          618 DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIV  697 (1134)
Q Consensus       618 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  697 (1134)
                      .||.|++||+.+++.+..+..+  ...|.++.|  ++.++++++.||.|++||+.++ .....+.               
T Consensus       257 ~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~---------------  316 (445)
T 2ovr_B          257 YDFMVKVWDPETETCLHTLQGH--TNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG-NCIHTLT---------------  316 (445)
T ss_dssp             TTSCEEEEEGGGTEEEEEECCC--SSCEEEEEE--CSSEEEEEETTSCEEEEETTTC-CEEEEEC---------------
T ss_pred             CCCEEEEEECCCCcEeEEecCC--CCceEEEEE--CCCEEEEEeCCCeEEEEECCCC-CEEEEEc---------------
Confidence            9999999999999988888754  667888888  7889999999999999998765 1111110               


Q ss_pred             cccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccc
Q 001163          698 KAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAM  777 (1134)
Q Consensus       698 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~  777 (1134)
                                                                                                      
T Consensus       317 --------------------------------------------------------------------------------  316 (445)
T 2ovr_B          317 --------------------------------------------------------------------------------  316 (445)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCe
Q 001163          778 RVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSY  857 (1134)
Q Consensus       778 ~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~  857 (1134)
                                                                                     +|...+.++.+  ++++
T Consensus       317 ---------------------------------------------------------------~~~~~v~~~~~--~~~~  331 (445)
T 2ovr_B          317 ---------------------------------------------------------------GHQSLTSGMEL--KDNI  331 (445)
T ss_dssp             ---------------------------------------------------------------CCCSCEEEEEE--ETTE
T ss_pred             ---------------------------------------------------------------CCcccEEEEEE--eCCE
Confidence                                                                           14445555555  4568


Q ss_pred             EEEee-CCeEEEEEccCCeEEEEecC---CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEec-----cCccC
Q 001163          858 VMSAS-GGKISLFNMMTFKTMTTFMP---PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKL-----KGHQK  928 (1134)
Q Consensus       858 la~~s-dg~i~lwd~~~~~~~~~~~~---~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l-----~~h~~  928 (1134)
                      +++++ ||.|++||+.+++.+..+..   |...|++++|++   .+|++|+.||.|++||+.+++.+..+     .+|.+
T Consensus       332 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  408 (445)
T 2ovr_B          332 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG  408 (445)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTC
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCc
Confidence            88887 89999999999999999886   778899999964   69999999999999999999988877     57889


Q ss_pred             ceEEEEEeeCCCEEEEEeCCCc----EEEEECCC
Q 001163          929 RITGLAFSNTLNVLVSSGADSQ----LCVWSTDG  958 (1134)
Q Consensus       929 ~V~~l~~s~d~~~l~s~s~Dg~----i~iwd~~~  958 (1134)
                      .|++++|+|++.++++++.||+    |.+||+..
T Consensus       409 ~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          409 VVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             EEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             eEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence            9999999999999999999998    99999876

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-32  Score=313.75  Aligned_cols=289  Identities=12%  Similarity=0.119  Sum_probs=253.8

Q ss_pred             EEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCC
Q 001163          350 VMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD  429 (1134)
Q Consensus       350 ~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd  429 (1134)
                      ....+|...|++++|+|+|+ ++++|+.||.|+|||+.+++.+..                   +.+|...|.+++|+|+
T Consensus        26 ~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~~~   85 (369)
T 3zwl_B           26 IKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGT-------------------LDGHTGTIWSIDVDCF   85 (369)
T ss_dssp             EEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTT
T ss_pred             EEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhh-------------------hhhcCCcEEEEEEcCC
Confidence            33445999999999999999 568999999999999999877653                   6789999999999999


Q ss_pred             CCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC-----CeEEEEECCCCc------
Q 001163          430 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED-----RVIKVWDAVTGT------  498 (1134)
Q Consensus       430 ~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d-----~~i~iwd~~~~~------  498 (1134)
                      +++|++++.||.|++||+.+++.+.   .+. |...|.+++|+|+++  ++++++.+     +.|++||+.++.      
T Consensus        86 ~~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~  159 (369)
T 3zwl_B           86 TKYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHELT  159 (369)
T ss_dssp             SSEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCCEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccceeec
Confidence            9999999999999999999988665   344 889999999999999  79999998     999999987664      


Q ss_pred             -----eeEEecCCCc--CEEEEeccccCCccEEEEecCCCcEEEEecCC-CCceeeecCCCCCeeEEEECcCCCEEEEEe
Q 001163          499 -----KQYIFEGHES--PVYSICPHHKENIQFIFSTATDGKIKAWLYDN-LGSRVDYDAPGHSSTMMAYSADGARLFSCG  570 (1134)
Q Consensus       499 -----~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  570 (1134)
                           .+..+..|..  .+.+++|+++  +.+|++++.||.|++||+.. ......+..+...|.+++|+|++++|++++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  237 (369)
T 3zwl_B          160 KVSEEPIHKIITHEGLDAATVAGWSTK--GKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS  237 (369)
T ss_dssp             EECSSCSEEEECCTTCCCEEEEEECGG--GCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccceeeeccCCcCccceeEEEEcCC--CCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec
Confidence                 3445556666  8999998764  48999999999999999998 566667777888999999999999999997


Q ss_pred             cCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCC--------------eEEEEEcCCCceeEEE
Q 001163          571 TNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF--------------MIKFWDMDNVNLLASI  636 (1134)
Q Consensus       571 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~  636 (1134)
                      .++    .|++||+.+++.+..+...  ..+..++|+|++.++++++.++              .+++||..+++.+..+
T Consensus       238 ~d~----~i~v~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  311 (369)
T 3zwl_B          238 RDT----NSFLVDVSTLQVLKKYETD--CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV  311 (369)
T ss_dssp             TTS----EEEEEETTTCCEEEEEECS--SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE
T ss_pred             CCc----eEEEEECCCCceeeeecCC--CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe
Confidence            644    6999999999999888733  3799999999999999999888              8999999999999998


Q ss_pred             ecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163          637 DADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       637 ~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      ..|  ...|.+++|+|++++|++++.||.|++|++..+
T Consensus       312 ~~~--~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          312 QGH--FGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS  347 (369)
T ss_dssp             ECC--SSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred             ecc--cCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence            865  668999999999999999999999999999765

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3.1e-33  Score=322.17  Aligned_cols=299  Identities=13%  Similarity=0.128  Sum_probs=251.5

Q ss_pred             EEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC
Q 001163          350 VMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP  428 (1134)
Q Consensus       350 ~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  428 (1134)
                      ...+. |.+.|++++|+|  + ++++|+.||.|+|||+.+++......             ....+.+|...|.+++|+|
T Consensus         9 ~~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~-------------~~~~~~~h~~~v~~~~~~~   72 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKD-------------KSYSHFVHKSGLHHVDVLQ   72 (397)
T ss_dssp             EEESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGG-------------GEEEEECCTTCEEEEEEEE
T ss_pred             hhhhhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCC-------------cceEEecCCCcEEEEEEec
Confidence            33443 999999999999  4 67999999999999999887211000             0012568999999999999


Q ss_pred             C----C---CEEEEEeCCCEEEEEEccCCce-----eeeeeeeecC-----CCCEEEEEEe----cCCCceE-EEEEeCC
Q 001163          429 D----G---TLFGVAYSKHIVHLYTYHGGDE-----LRNHLEIEAH-----VGSVNDLAFS----YPNKQLS-VVTCGED  486 (1134)
Q Consensus       429 d----~---~~las~s~dg~v~iwd~~~~~~-----~~~~~~l~~h-----~~~V~~v~~s----~~~~~~~-l~s~s~d  486 (1134)
                      +    +   ++|++++.||.|++||+.+++.     +.   .+.+|     ...|.+++|+    |+++  + |++++.|
T Consensus        73 ~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~d  147 (397)
T 1sq9_A           73 AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFE---KLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDVK  147 (397)
T ss_dssp             EEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE---EECCSCTTGGGSCEEEEEEECCC----C--EEEEEEETT
T ss_pred             ccccCCccccEEEEEcCCCCEEEEEccCCcccccccce---eecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeCC
Confidence            9    9   9999999999999999998875     43   56778     5999999999    9998  7 9999999


Q ss_pred             CeEEEEECCC------CceeE-----Ee-------cCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec
Q 001163          487 RVIKVWDAVT------GTKQY-----IF-------EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD  548 (1134)
Q Consensus       487 ~~i~iwd~~~------~~~~~-----~~-------~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~  548 (1134)
                      +.|++||+.+      ++.+.     .+       ..|...|.+++|++  ++ ++++++.|+.|++||++.......+.
T Consensus       148 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~  224 (397)
T 1sq9_A          148 GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFE  224 (397)
T ss_dssp             SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEE
T ss_pred             CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCceeEEEe
Confidence            9999999998      77766     77       44899999999865  55 99999999999999999888877787


Q ss_pred             C---C---CCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecC-------------CCCCceEEEEEcCC
Q 001163          549 A---P---GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG-------------LGKRSVGVVQFDTT  609 (1134)
Q Consensus       549 ~---~---~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~-------------~~~~~v~~~~~~~~  609 (1134)
                      .   +   ...+.+++|+|++++|++++.++ ..+.|++||+.+++.+..+.+             |.. .+.+++|+|+
T Consensus       225 ~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~-~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~  302 (397)
T 1sq9_A          225 SQHSMINNSNSIRSVKFSPQGSLLAIAHDSN-SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-WVMSLSFNDS  302 (397)
T ss_dssp             CCC---CCCCCEEEEEECSSTTEEEEEEEET-TEEEEEEEETTTCCEEEEECBC--------CCBSBSS-CEEEEEECSS
T ss_pred             ccccccccCCccceEEECCCCCEEEEEecCC-CCceEEEEECCCCcccceeccCcccccccccccccCC-cEEEEEECCC
Confidence            7   7   88999999999999999997641 115799999999999999988             665 8999999999


Q ss_pred             CCEEEEEeCCCeEEEEEcCCCceeEEEe------cC-------------CCCCCcceEEEcCCC----------cEEEEE
Q 001163          610 KNRFLAAGDEFMIKFWDMDNVNLLASID------AD-------------GGLQASPCIRFNKEG----------ILLAVS  660 (1134)
Q Consensus       610 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~v~~v~~sp~~----------~~l~~~  660 (1134)
                      +++|++++.||.|++||+.+++.+..+.      .+             .+...|.+++|+|++          ++|+++
T Consensus       303 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~  382 (397)
T 1sq9_A          303 GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCV  382 (397)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEE
T ss_pred             CCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEe
Confidence            9999999999999999999999999988      33             115689999999998          799999


Q ss_pred             ECCCcEEEEEccCC
Q 001163          661 TNDNGIKILANADG  674 (1134)
Q Consensus       661 ~~dg~i~iw~~~~~  674 (1134)
                      +.||.|++|++.++
T Consensus       383 ~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          383 CLDRSIRWFREAGG  396 (397)
T ss_dssp             ETTTEEEEEEEEC-
T ss_pred             cCCCcEEEEEcCCC
Confidence            99999999999875

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=7.5e-34  Score=330.70  Aligned_cols=294  Identities=17%  Similarity=0.230  Sum_probs=236.2

Q ss_pred             eecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC-CCC
Q 001163          353 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGT  431 (1134)
Q Consensus       353 ~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~  431 (1134)
                      -.|...|+||+|+|.+..+||+|+.||+|+|||+.+++.....                 .+.+|.+.|++|+|+| +++
T Consensus       116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~-----------------~~~gH~~~V~~l~f~p~~~~  178 (435)
T 4e54_B          116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI-----------------KGIGAGGSITGLKFNPLNTN  178 (435)
T ss_dssp             EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE-----------------CCCSSSCCCCEEEECSSCTT
T ss_pred             CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE-----------------EccCCCCCEEEEEEeCCCCC
Confidence            3488999999999976668899999999999999887643321                 1568999999999998 789


Q ss_pred             EEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEE
Q 001163          432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY  511 (1134)
Q Consensus       432 ~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~  511 (1134)
                      +|++|+.||+|+|||++++. .........+...+.+++|+|+++  +|++|+.||.|++||+. ++.+..+.+|...|.
T Consensus       179 ~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~  254 (435)
T 4e54_B          179 QFYASSMEGTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRMHKKKVT  254 (435)
T ss_dssp             EEEEECSSSCEEEEETTSCE-EEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBCCSSCEE
T ss_pred             EEEEEeCCCEEEEeeccCCc-eeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEecccceEE
Confidence            99999999999999998764 332222334556789999999999  89999999999999975 567788999999999


Q ss_pred             EEeccccCCccEEEEecCCCcEEEEecCCCCceee---ecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCe
Q 001163          512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD---YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA  588 (1134)
Q Consensus       512 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~  588 (1134)
                      +++|++..+ .++++++.|+.|++||++.......   ...|...|.+++|+|+|++|++++.|+    .|++||+.++.
T Consensus       255 ~v~~~p~~~-~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~----~i~iwd~~~~~  329 (435)
T 4e54_B          255 HVALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKS----EIRVYSASQWD  329 (435)
T ss_dssp             EEEECTTCS-SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSS----CEEEEESSSSS
T ss_pred             eeeecCCCc-eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCC----EEEEEECCCCc
Confidence            999987543 5889999999999999987665433   245677999999999999999998754    49999999998


Q ss_pred             eEEEecCCCCC-----ceEEEEEcCCCCEEEEEe------------CCCeEEEEEcCCCceeEEEecCCCCCCcceE-EE
Q 001163          589 VKRTYHGLGKR-----SVGVVQFDTTKNRFLAAG------------DEFMIKFWDMDNVNLLASIDADGGLQASPCI-RF  650 (1134)
Q Consensus       589 ~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v-~~  650 (1134)
                      ....+..|...     .+....|+|++..+++++            .++.|++||..+++.+..+.. ++...|.++ +|
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~-~~~~~v~s~~~f  408 (435)
T 4e54_B          330 CPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYD-PESSGISSLNEF  408 (435)
T ss_dssp             SEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECC-SSCCCCCCEEEE
T ss_pred             cceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeC-CCCCcEEEEEEE
Confidence            88777665431     223456777777776664            346799999999999888754 235567776 69


Q ss_pred             cCCCcEEEEEECCCcEEEEEccCC
Q 001163          651 NKEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       651 sp~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      +|+|.+|++|+ |+.|+||++.++
T Consensus       409 spdg~~lasg~-d~~i~iW~~~~g  431 (435)
T 4e54_B          409 NPMGDTLASAM-GYHILIWSQQEA  431 (435)
T ss_dssp             CTTSSCEEEEC-SSEEEECCCC--
T ss_pred             CCCCCEEEEEc-CCcEEEEECCcC
Confidence            99999999876 789999999877

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.4e-33  Score=320.95  Aligned_cols=291  Identities=16%  Similarity=0.224  Sum_probs=243.9

Q ss_pred             ecCCCeeEEEEcCC---CCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCC-
Q 001163          354 NQGSAVKSMDFHPV---QQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD-  429 (1134)
Q Consensus       354 ~h~~~V~~v~fsp~---g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-  429 (1134)
                      +|...|++++|+|+   +..++++++.++.|+|||+.+++.+....              ......|...|.+++|+|+ 
T Consensus        16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~~~~~   81 (366)
T 3k26_A           16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQ--------------SYVDADADENFYTCAWTYDS   81 (366)
T ss_dssp             TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEE--------------EEECSCTTCCEEEEEEEECT
T ss_pred             CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeee--------------eccccCCCCcEEEEEeccCC
Confidence            38999999999985   55556677777799999999887654311              0012347789999999998 


Q ss_pred             ---CCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEec-CCCceEEEEEeCCCeEEEEECCCCceeEEe--
Q 001163          430 ---GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY-PNKQLSVVTCGEDRVIKVWDAVTGTKQYIF--  503 (1134)
Q Consensus       430 ---~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~--  503 (1134)
                         +++|++|+.||.|++||+.+++.+.   .+.+|...|.+++|+| ++.  +|++++.|+.|++||+.+++.+..+  
T Consensus        82 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~  156 (366)
T 3k26_A           82 NTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGG  156 (366)
T ss_dssp             TTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred             CCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEecc
Confidence               6799999999999999999988665   6788999999999999 777  8999999999999999999999988  


Q ss_pred             -cCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec----------------------------CCCCCe
Q 001163          504 -EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD----------------------------APGHSS  554 (1134)
Q Consensus       504 -~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~----------------------------~~~~~v  554 (1134)
                       .+|...|.+++|++  ++.+|++++.||.|++||+........+.                            .+...|
T Consensus       157 ~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  234 (366)
T 3k26_A          157 VEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYV  234 (366)
T ss_dssp             TTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCC
T ss_pred             cccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceE
Confidence             78999999999976  45899999999999999998654433222                            267789


Q ss_pred             eEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCee--------------EEEecCCCCCceEEEEEcCC--CCEEEEEeC
Q 001163          555 TMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV--------------KRTYHGLGKRSVGVVQFDTT--KNRFLAAGD  618 (1134)
Q Consensus       555 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--------------~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~  618 (1134)
                      .+++|+  ++++++++.+    +.|++||+.++..              +..+..|.. .+.+++|+|+  +++|++++.
T Consensus       235 ~~~~~~--~~~l~~~~~d----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~~l~~~~~  307 (366)
T 3k26_A          235 DCVRWL--GDLILSKSCE----NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC-DIWYMRFSMDFWQKMLALGNQ  307 (366)
T ss_dssp             CEEEEE--TTEEEEECSS----SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC-CSSCCCCEECTTSSEEEEECT
T ss_pred             EEEEEc--CCEEEEEecC----CEEEEEeCCCccccccccccCCcchheeccccccCC-cEEEEEEcCCCCCcEEEEEec
Confidence            999998  7789988754    4699999987643              777777776 7899999999  999999999


Q ss_pred             CCeEEEEEcCCCce----eEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEcc
Q 001163          619 EFMIKFWDMDNVNL----LASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA  672 (1134)
Q Consensus       619 dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~  672 (1134)
                      ||.|++||+.+++.    ...+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus       308 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          308 VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            99999999998864    3466666557799999999999999999999999999975

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-32  Score=304.06  Aligned_cols=288  Identities=18%  Similarity=0.263  Sum_probs=248.8

Q ss_pred             ceeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEE
Q 001163          347 KTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM  425 (1134)
Q Consensus       347 ~~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  425 (1134)
                      .+..+.+. |.+.|++++| |++++ +++|+.||.|++||+.+++....                   +..|...|.+++
T Consensus         8 ~~~~~~l~~h~~~v~~~~~-~~~~~-l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~~~~v~~~~   66 (313)
T 3odt_A            8 YQLSATLKGHDQDVRDVVA-VDDSK-VASVSRDGTVRLWSKDDQWLGTV-------------------VYTGQGFLNSVC   66 (313)
T ss_dssp             CEEEEEECCCSSCEEEEEE-EETTE-EEEEETTSEEEEEEESSSEEEEE-------------------EEECSSCEEEEE
T ss_pred             HHHHHHhhCCCCCcEEEEe-cCCCE-EEEEEcCCcEEEEECCCCEEEEE-------------------eecCCccEEEEE
Confidence            35566665 9999999999 99984 68999999999999988765543                   567899999999


Q ss_pred             EcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecC
Q 001163          426 WSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG  505 (1134)
Q Consensus       426 ~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  505 (1134)
                      |+|++++|++|+.||.|++|++...........+.+|...|.+++|  +++  ++++++.|+.|++||  .++.+..+..
T Consensus        67 ~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~~  140 (313)
T 3odt_A           67 YDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQA  140 (313)
T ss_dssp             EETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEEC
T ss_pred             ECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEeccc
Confidence            9999999999999999999999876544445568899999999999  466  799999999999999  7888889999


Q ss_pred             CCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecC-CCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeC
Q 001163          506 HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA-PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE  584 (1134)
Q Consensus       506 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~  584 (1134)
                      |...|.++++.+. ++.++++++.|+.|++||.  ......+.. +...+.+++|+|++. +++++.+    +.|++||+
T Consensus       141 ~~~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~d----g~i~i~d~  212 (313)
T 3odt_A          141 HNASVWDAKVVSF-SENKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSND----GLIKLVDM  212 (313)
T ss_dssp             CSSCEEEEEEEET-TTTEEEEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEETT----SEEEEEET
T ss_pred             CCCceeEEEEccC-CCCEEEEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccCC----CeEEEEEC
Confidence            9999999998762 4479999999999999993  344445555 677999999999998 7777654    46999999


Q ss_pred             CCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCC
Q 001163          585 SEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN  664 (1134)
Q Consensus       585 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg  664 (1134)
                      .+++.+..+.+|.. .+.+++|+|++ .+++++.||.|++||+.+++.+..+..+  ...|.+++|+|+++ +++++.||
T Consensus       213 ~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~i~~~~~~~~~~-~~~~~~dg  287 (313)
T 3odt_A          213 HTGDVLRTYEGHES-FVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLP--AISIWSVDCMSNGD-IIVGSSDN  287 (313)
T ss_dssp             TTCCEEEEEECCSS-CEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECS--SSCEEEEEECTTSC-EEEEETTS
T ss_pred             CchhhhhhhhcCCc-eEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEecc--CceEEEEEEccCCC-EEEEeCCC
Confidence            99999999998876 89999999999 6899999999999999999999998866  56899999999998 56799999


Q ss_pred             cEEEEEccCC
Q 001163          665 GIKILANADG  674 (1134)
Q Consensus       665 ~i~iw~~~~~  674 (1134)
                      .|++|++.++
T Consensus       288 ~i~iw~~~~~  297 (313)
T 3odt_A          288 LVRIFSQEKS  297 (313)
T ss_dssp             CEEEEESCGG
T ss_pred             cEEEEeCCCC
Confidence            9999999876

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=5.3e-33  Score=318.33  Aligned_cols=308  Identities=15%  Similarity=0.193  Sum_probs=248.0

Q ss_pred             EEeCCCCeeEEEecCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcC-CCcEEE
Q 001163          581 EWNESEGAVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK-EGILLA  658 (1134)
Q Consensus       581 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~  658 (1134)
                      +|+....+....+.+|.. .|.+++|+|++ ++|++++.||.|++||+.+++....+...++...|.+++|+| ++.+|+
T Consensus        57 ~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  135 (383)
T 3ei3_B           57 IRSLKSYKLHRTASPFDR-RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLF  135 (383)
T ss_dssp             HHHHTTCEEEEEECCCSS-CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEE
T ss_pred             cccccccceEEeccCCCC-CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEE
Confidence            345556677778888876 89999999999 999999999999999999999888887656688999999999 789999


Q ss_pred             EEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcc
Q 001163          659 VSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTD  738 (1134)
Q Consensus       659 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  738 (1134)
                      +++.|+.|++||+.+.  ....+..                                                       
T Consensus       136 s~~~d~~i~iwd~~~~--~~~~~~~-------------------------------------------------------  158 (383)
T 3ei3_B          136 VSSIRGATTLRDFSGS--VIQVFAK-------------------------------------------------------  158 (383)
T ss_dssp             EEETTTEEEEEETTSC--EEEEEEC-------------------------------------------------------
T ss_pred             EEeCCCEEEEEECCCC--ceEEEec-------------------------------------------------------
Confidence            9999999999998642  1111100                                                       


Q ss_pred             cccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCccccccc
Q 001163          739 VKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATT  818 (1134)
Q Consensus       739 ~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  818 (1134)
                                                                                                      
T Consensus       159 --------------------------------------------------------------------------------  158 (383)
T 3ei3_B          159 --------------------------------------------------------------------------------  158 (383)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCC
Q 001163          819 NQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDN  897 (1134)
Q Consensus       819 ~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~  897 (1134)
                                        .  .++...|.+++|+|++++|++++ |+.|++||+ +++.+..+.+|...|.+++|+| ++
T Consensus       159 ------------------~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~  216 (383)
T 3ei3_B          159 ------------------T--DSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RC  216 (383)
T ss_dssp             ------------------C--CCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SC
T ss_pred             ------------------c--CCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CC
Confidence                              0  01456788889999999999888 899999998 5778888999999999999999 67


Q ss_pred             c-EEEEEeCCCcEEEEEccc----ceEEEeccCccCceEEEEEee-CCCEEEEEeCCCcEEEEECCCCccccceeeeec-
Q 001163          898 N-IIAIGMEDSSIQIYNVRV----DEVKTKLKGHQKRITGLAFSN-TLNVLVSSGADSQLCVWSTDGWEKQASKFLTIP-  970 (1134)
Q Consensus       898 ~-~la~g~~dg~i~iwd~~~----~~~~~~l~~h~~~V~~l~~s~-d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~-  970 (1134)
                      + +|++|+.|+.|++||+.+    ++.+..+ +|...|++++|+| ++++|++++.|+.|++||+.+++.......... 
T Consensus       217 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  295 (383)
T 3ei3_B          217 DWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHR  295 (383)
T ss_dssp             TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBC
T ss_pred             CCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccc
Confidence            7 999999999999999998    6666666 6999999999999 999999999999999999998765432211110 


Q ss_pred             -CCCCC-------CCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCC
Q 001163          971 -NGRTA-------SALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEG 1042 (1134)
Q Consensus       971 -~~~~~-------~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg 1042 (1134)
                       ..+..       ....+..++|+|||++ ..+.|+.|++||+.+++.+..+....|...+..++|+|||++|++++ |+
T Consensus       296 ~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~  373 (383)
T 3ei3_B          296 QFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GF  373 (383)
T ss_dssp             CCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TT
T ss_pred             ccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CC
Confidence             01110       0123444666666666 22579999999999999998888555778888899999999999997 99


Q ss_pred             cEEEeecCC
Q 001163         1043 SVGVLTAST 1051 (1134)
Q Consensus      1043 ~i~vwd~~~ 1051 (1134)
                      .|++||+.+
T Consensus       374 ~i~iw~~~~  382 (383)
T 3ei3_B          374 NILIWNRED  382 (383)
T ss_dssp             EEEEEECC-
T ss_pred             cEEEEecCC
Confidence            999999875

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.4e-33  Score=318.76  Aligned_cols=290  Identities=14%  Similarity=0.091  Sum_probs=244.8

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCcc--ceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRE--RIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL  432 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~  432 (1134)
                      |...|++++|+|+|+ ++++|+.|+.|+|||+.+++  .+..                   +.+|...|.+++|+|++++
T Consensus         7 ~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~~~   66 (372)
T 1k8k_C            7 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHE-------------------LKEHNGQVTGVDWAPDSNR   66 (372)
T ss_dssp             CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEE-------------------EECCSSCEEEEEEETTTTE
T ss_pred             cCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeeee-------------------ecCCCCcccEEEEeCCCCE
Confidence            788999999999999 56899999999999998886  3332                   5689999999999999999


Q ss_pred             EEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCce---e-EEecCCCc
Q 001163          433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK---Q-YIFEGHES  508 (1134)
Q Consensus       433 las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~---~-~~~~~h~~  508 (1134)
                      |++++.||.|++||+.+++... ...+.+|...|.+++|+|+++  +|++++.|+.|++||+.++..   . ....+|..
T Consensus        67 l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~  143 (372)
T 1k8k_C           67 IVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS  143 (372)
T ss_dssp             EEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred             EEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence            9999999999999999887433 224578999999999999998  899999999999999988873   3 33467899


Q ss_pred             CEEEEeccccCCccEEEEecCCCcEEEEecC------------------CCCceeeecCCCCCeeEEEECcCCCEEEEEe
Q 001163          509 PVYSICPHHKENIQFIFSTATDGKIKAWLYD------------------NLGSRVDYDAPGHSSTMMAYSADGARLFSCG  570 (1134)
Q Consensus       509 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  570 (1134)
                      .|.+++|++  ++.+|++++.|+.|++||+.                  .......+..+...+.+++|+|++++|++++
T Consensus       144 ~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  221 (372)
T 1k8k_C          144 TVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS  221 (372)
T ss_dssp             CEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred             CeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe
Confidence            999999976  45899999999999999954                  4455566667788999999999999999998


Q ss_pred             cCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC--Ccee---------------
Q 001163          571 TNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN--VNLL---------------  633 (1134)
Q Consensus       571 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~---------------  633 (1134)
                      .++    .|++||+.+++.+..+..+.. .+.+++|+|++.+++++ .|+.|++|++.+  ++..               
T Consensus       222 ~d~----~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (372)
T 1k8k_C          222 HDS----TVCLADADKKMAVATLASETL-PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG  295 (372)
T ss_dssp             TTT----EEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-------
T ss_pred             CCC----EEEEEECCCCceeEEEccCCC-CeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhh
Confidence            644    699999999999999998876 89999999999877777 899999999987  4210               


Q ss_pred             -----------------------EEEecCCCCCCcceEEEc-CCC---cEEEEEECCCcEEEEEccCCce
Q 001163          634 -----------------------ASIDADGGLQASPCIRFN-KEG---ILLAVSTNDNGIKILANADGIR  676 (1134)
Q Consensus       634 -----------------------~~~~~~~~~~~v~~v~~s-p~~---~~l~~~~~dg~i~iw~~~~~~~  676 (1134)
                                             ..+. .+|...|.+++|. ++|   .+|++++.||.|++|++.++..
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~  364 (372)
T 1k8k_C          296 LTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES  364 (372)
T ss_dssp             -CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred             cchhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence                                   1111 2567789999976 576   9999999999999999987643

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=5e-33  Score=321.76  Aligned_cols=347  Identities=14%  Similarity=0.187  Sum_probs=243.6

Q ss_pred             EEEEeCCCCeeEEEecCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeEEEec-----------CCCCCCcc
Q 001163          579 LVEWNESEGAVKRTYHGLGKRSVGVVQFDT-TKNRFLAAGDEFMIKFWDMDNVNLLASIDA-----------DGGLQASP  646 (1134)
Q Consensus       579 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~v~  646 (1134)
                      +++|+...++....+.+|.. .|.+++|+| ++++|++++.||.|++||+.+++....+..           .++...|.
T Consensus        25 ~~v~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  103 (408)
T 4a11_B           25 RRVLGLELNKDRDVERIHGG-GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVE  103 (408)
T ss_dssp             HHHHTEEECTTEEECCCCSS-CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEE
T ss_pred             ceeeccccCcceeeeeccCC-cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEE
Confidence            66788877888888888876 999999999 999999999999999999998776554431           23577899


Q ss_pred             eEEEcC-CCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCccccc
Q 001163          647 CIRFNK-EGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAA  725 (1134)
Q Consensus       647 ~v~~sp-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  725 (1134)
                      +++|+| ++.++++++.||.|++|++.++ .....+.                                           
T Consensus       104 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~-------------------------------------------  139 (408)
T 4a11_B          104 TVQWYPHDTGMFTSSSFDKTLKVWDTNTL-QTADVFN-------------------------------------------  139 (408)
T ss_dssp             EEEECTTCTTCEEEEETTSEEEEEETTTT-EEEEEEE-------------------------------------------
T ss_pred             EEEEccCCCcEEEEEeCCCeEEEeeCCCC-ccceecc-------------------------------------------
Confidence            999999 7789999999999999998765 1111110                                           


Q ss_pred             ccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeec
Q 001163          726 MVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKW  805 (1134)
Q Consensus       726 ~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~  805 (1134)
                                                                                                      
T Consensus       140 --------------------------------------------------------------------------------  139 (408)
T 4a11_B          140 --------------------------------------------------------------------------------  139 (408)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcC---CCCeEEEee-CCeEEEEEccCCeEEEEec
Q 001163          806 PRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSK---NDSYVMSAS-GGKISLFNMMTFKTMTTFM  881 (1134)
Q Consensus       806 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~---dg~~la~~s-dg~i~lwd~~~~~~~~~~~  881 (1134)
                                                          +...+.++++++   ++.++++++ ++.|++||+.+++.+..+.
T Consensus       140 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~  183 (408)
T 4a11_B          140 ------------------------------------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ  183 (408)
T ss_dssp             ------------------------------------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC
T ss_pred             ------------------------------------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec
Confidence                                                222344444444   445788887 8999999999999999999


Q ss_pred             CCCCCeEEEEEcCCCCc-EEEEEeCCCcEEEEEcccce-EEEec---------------cCccCceEEEEEeeCCCEEEE
Q 001163          882 PPPPAATFLAFHPQDNN-IIAIGMEDSSIQIYNVRVDE-VKTKL---------------KGHQKRITGLAFSNTLNVLVS  944 (1134)
Q Consensus       882 ~~~~~v~~l~~sp~~~~-~la~g~~dg~i~iwd~~~~~-~~~~l---------------~~h~~~V~~l~~s~d~~~l~s  944 (1134)
                      +|...|++++|+| ++. ++++|+.||.|++||+.++. .+..+               .+|...|.+++|+|++++|++
T Consensus       184 ~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  262 (408)
T 4a11_B          184 GHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLT  262 (408)
T ss_dssp             CCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEE
T ss_pred             CCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEE
Confidence            9999999999999 665 69999999999999998764 33333               578999999999999999999


Q ss_pred             EeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEE
Q 001163          945 SGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPIT 1024 (1134)
Q Consensus       945 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~ 1024 (1134)
                      ++.|+.|++||+.+++...............  ...........+.+++++.++.|++||+.+++.+..+.  +|...|+
T Consensus       263 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~v~  338 (408)
T 4a11_B          263 VGTDNRMRLWNSSNGENTLVNYGKVCNNSKK--GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK--GHYKTVD  338 (408)
T ss_dssp             EETTSCEEEEETTTCCBCCCCCCCCCCCCSS--CCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC--CCSSCEE
T ss_pred             ecCCCeEEEEECCCCccceeccccccccccc--cceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec--cCCCeEE
Confidence            9999999999999876432211111111110  12233334455666666899999999999999998887  8899999


Q ss_pred             EEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCC
Q 001163         1025 HATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1103 (1134)
Q Consensus      1025 ~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~ 1103 (1134)
                      +++|+||+++|++++.||.|++||+.+++.+.......          ..  ..+.|.....+.+.+.|+.+++|+.+.
T Consensus       339 ~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~----------~~--~~~~~~~~~~~~~~~~~~~~~~W~~~~  405 (408)
T 4a11_B          339 CCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETT----------TK--SQLNPAFEDAWSSSDEEGGTSAWSHPQ  405 (408)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEEECC----------------------------------------------------
T ss_pred             EEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceE----------ec--cccccccceeecccCccCceeecCCcc
Confidence            99999999999999999999999999998765443111          01  123343556777889999999998764

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.8e-33  Score=316.23  Aligned_cols=289  Identities=13%  Similarity=0.193  Sum_probs=240.7

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeC---CCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCC--
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTN---MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD--  429 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--  429 (1134)
                      |...|++++|+|++.+++++|+.   ||.|+|||+.+++.....                  ..+|...|.+++|+|+  
T Consensus        17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~------------------~~~~~~~v~~~~~~~~~~   78 (357)
T 3i2n_A           17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR------------------EIEKAKPIKCGTFGATSL   78 (357)
T ss_dssp             CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE------------------EEEESSCEEEEECTTCCT
T ss_pred             CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee------------------eecccCcEEEEEEcCCCC
Confidence            99999999999999889889987   999999999988754321                  2368999999999998  


Q ss_pred             -CCEEEEEeCCCEEEEEEccCCc-eeeeeeeeecCCCCEEEEEE------ecCCCceEEEEEeCCCeEEEEECCCCc-ee
Q 001163          430 -GTLFGVAYSKHIVHLYTYHGGD-ELRNHLEIEAHVGSVNDLAF------SYPNKQLSVVTCGEDRVIKVWDAVTGT-KQ  500 (1134)
Q Consensus       430 -~~~las~s~dg~v~iwd~~~~~-~~~~~~~l~~h~~~V~~v~~------s~~~~~~~l~s~s~d~~i~iwd~~~~~-~~  500 (1134)
                       +++|++|+.||.|++||+.+++ .+.   .+.+|...|.+++|      +|+++  +|++++.|+.|++||+.+++ .+
T Consensus        79 ~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vwd~~~~~~~~  153 (357)
T 3i2n_A           79 QQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVWDPRQKDDPV  153 (357)
T ss_dssp             TTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEECTTSCSSCS
T ss_pred             CCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEEeCCCCCCcc
Confidence             7999999999999999999887 443   67899999999965      67888  79999999999999999987 77


Q ss_pred             EEecCCCc----CEEEEecc--ccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECc---CCCEEEEEec
Q 001163          501 YIFEGHES----PVYSICPH--HKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSA---DGARLFSCGT  571 (1134)
Q Consensus       501 ~~~~~h~~----~v~~~~~~--~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~  571 (1134)
                      ..+..|.+    .|.+++|.  .++++.++++++.|+.|++||++...... ...+...+.+++|+|   +++++++++.
T Consensus       154 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~  232 (357)
T 3i2n_A          154 ANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLVATSL  232 (357)
T ss_dssp             EEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEEEEEES
T ss_pred             eeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEEEEECC
Confidence            78876655    78888842  23566899999999999999998766533 345677899999999   9999999976


Q ss_pred             CCCCCeEEEEEeCCCCeeEEEec-----CCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCc--------------
Q 001163          572 NKEGESYLVEWNESEGAVKRTYH-----GLGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNVN--------------  631 (1134)
Q Consensus       572 ~~~~~~~i~~wd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~--------------  631 (1134)
                      ++    .|++||+++++....+.     +|.. .+.+++|+|++. ++++++.||.|++||+..+.              
T Consensus       233 dg----~i~i~d~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~  307 (357)
T 3i2n_A          233 EG----KFHVFDMRTQHPTKGFASVSEKAHKS-TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGV  307 (357)
T ss_dssp             TT----EEEEEEEEEEETTTEEEEEEEECCSS-CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCC
T ss_pred             CC----eEEEEeCcCCCcccceeeeccCCCcC-CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccc
Confidence            44    69999998876655444     6665 899999999998 89999999999999997643              


Q ss_pred             -----eeEEEecCCCCCCcceEEEcCCCcEEE-EEECCCcEEEEEccCC
Q 001163          632 -----LLASIDADGGLQASPCIRFNKEGILLA-VSTNDNGIKILANADG  674 (1134)
Q Consensus       632 -----~~~~~~~~~~~~~v~~v~~sp~~~~l~-~~~~dg~i~iw~~~~~  674 (1134)
                           .+..+..  +...|.+++|+|++++|+ +++.||.|++|++.+.
T Consensus       308 ~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          308 AGSVSLLQNVTL--STQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             CCEEEEEEEEEC--CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred             ccccceeecccc--CCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence                 4445554  467899999999999888 8999999999999765

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-33  Score=327.01  Aligned_cols=314  Identities=15%  Similarity=0.211  Sum_probs=254.2

Q ss_pred             eCCCCCCcccccCCCCCceeEEEe-e-cCCCeeEEEEcC-CCCeEEEEEeCCCcEEEEecCC---ccceeeeceeeeecc
Q 001163          330 YTPQSLGQSSYSTDDLPKTVVMTL-N-QGSAVKSMDFHP-VQQILLVVGTNMGDVMLWEVGS---RERIAVKSFKVWELG  403 (1134)
Q Consensus       330 ~s~~~~~l~~~~~d~~~~~~~~~~-~-h~~~V~~v~fsp-~g~~lla~gs~dg~v~iwd~~~---~~~~~~~~~~~~~~~  403 (1134)
                      |+|++..+++........+++..+ . |.+.|++++|+| +++ ++++|+.||+|+|||+.+   +....          
T Consensus        35 f~~~~~~~~~~~~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~----------  103 (437)
T 3gre_A           35 FGPIQEIVRSPNMGNLRGKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYS----------  103 (437)
T ss_dssp             GCCCCCCCCCCCGGGCCCCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCS----------
T ss_pred             cCCccccccccccccccceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccc----------
Confidence            788888877665444566778888 4 789999999999 888 568999999999999976   32111          


Q ss_pred             ccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEcc---CCceeeeee-----e--eec--CCCCEEEEE-
Q 001163          404 ACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYH---GGDELRNHL-----E--IEA--HVGSVNDLA-  470 (1134)
Q Consensus       404 ~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~---~~~~~~~~~-----~--l~~--h~~~V~~v~-  470 (1134)
                             .....+|...|.+++|+|++++|++|+.||.|++||+.   +++......     .  +..  +...+.++. 
T Consensus       104 -------~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  176 (437)
T 3gre_A          104 -------SSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRA  176 (437)
T ss_dssp             -------CSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEE
T ss_pred             -------eeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEE
Confidence                   00122599999999999999999999999999999995   554333111     1  112  566777777 


Q ss_pred             -EecCCCceEEEEEeCCCeEEEEECCCCceeEEecC--CCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeee
Q 001163          471 -FSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG--HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY  547 (1134)
Q Consensus       471 -~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~  547 (1134)
                       +++++.  +|++++.|+.|++||+.+++++..+.+  |...|.+++|+++  +.+|++|+.||.|++||++.......+
T Consensus       177 ~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~  252 (437)
T 3gre_A          177 FVNEEKS--LLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEE--CCVLILGTTRGIIDIWDIRFNVLIRSW  252 (437)
T ss_dssp             EECSSCE--EEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTT--SCEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEcCCCC--EEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCC--CCEEEEEcCCCeEEEEEcCCccEEEEE
Confidence             456777  899999999999999999999999998  8999999999654  589999999999999999987776666


Q ss_pred             c-CCCCCeeEEEEC----cCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCC-------------------------C
Q 001163          548 D-APGHSSTMMAYS----ADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL-------------------------G  597 (1134)
Q Consensus       548 ~-~~~~~v~~~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~-------------------------~  597 (1134)
                      . .+...|.+++|+    +++.++++++.    ++.|++||+.+++.+..+.++                         +
T Consensus       253 ~~~~~~~v~~~~~~~~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  328 (437)
T 3gre_A          253 SFGDHAPITHVEVCQFYGKNSVIVVGGSS----KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS  328 (437)
T ss_dssp             BCTTCEEEEEEEECTTTCTTEEEEEEEST----TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCS
T ss_pred             ecCCCCceEEEEeccccCCCccEEEEEcC----CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccccc
Confidence            5 556689999655    56778998865    457999999999998888765                         2


Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCC-----------------------------------CC
Q 001163          598 KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG-----------------------------------GL  642 (1134)
Q Consensus       598 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------------------------------~~  642 (1134)
                      ...|.+++|+ ++++|++++.||.|++||+.+++....+..+.                                   |.
T Consensus       329 ~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  407 (437)
T 3gre_A          329 LNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHH  407 (437)
T ss_dssp             GGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------C
T ss_pred             CCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccc
Confidence            2357889999 77899999999999999999999887776531                                   57


Q ss_pred             CCcceEEEcCC--CcEEEEEECCCcEEEEE
Q 001163          643 QASPCIRFNKE--GILLAVSTNDNGIKILA  670 (1134)
Q Consensus       643 ~~v~~v~~sp~--~~~l~~~~~dg~i~iw~  670 (1134)
                      ..|++++|+++  +.+|++|+.||.|+||+
T Consensus       408 ~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          408 DIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             CCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             cceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            78999999998  78999999999999994

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.8e-32  Score=307.44  Aligned_cols=301  Identities=12%  Similarity=0.162  Sum_probs=247.1

Q ss_pred             ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEE
Q 001163          413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW  492 (1134)
Q Consensus       413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  492 (1134)
                      .+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+.   .+.+|...|.+++|+|+++  +|++++.|+.|++|
T Consensus        27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iw  101 (369)
T 3zwl_B           27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKLW  101 (369)
T ss_dssp             EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEEE
T ss_pred             EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEEE
Confidence            378999999999999999999999999999999999988665   6889999999999999999  89999999999999


Q ss_pred             ECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCC-----CcEEEEecCCCCc-----------eeeecCCCC--Ce
Q 001163          493 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATD-----GKIKAWLYDNLGS-----------RVDYDAPGH--SS  554 (1134)
Q Consensus       493 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----g~i~vwd~~~~~~-----------~~~~~~~~~--~v  554 (1134)
                      |+.+++.+..+. |...|.+++|++  ++.++++++.+     +.|++||+.....           ...+..+..  .+
T Consensus       102 d~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (369)
T 3zwl_B          102 DVSNGQCVATWK-SPVPVKRVEFSP--CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA  178 (369)
T ss_dssp             ETTTCCEEEEEE-CSSCEEEEEECT--TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred             ECCCCcEEEEee-cCCCeEEEEEcc--CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence            999999999888 889999999965  45899999998     9999999986543           222333444  89


Q ss_pred             eEEEECcCCCEEEEEecCCCCCeEEEEEeCCC-CeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcee
Q 001163          555 TMMAYSADGARLFSCGTNKEGESYLVEWNESE-GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL  633 (1134)
Q Consensus       555 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  633 (1134)
                      .+++|+|+++++++++.+    +.|++||+.+ ++.+..+..|.. .+.+++|+|++++|++++.||.|++||+.+++.+
T Consensus       179 ~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~  253 (369)
T 3zwl_B          179 TVAGWSTKGKYIIAGHKD----GKISKYDVSNNYEYVDSIDLHEK-SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL  253 (369)
T ss_dssp             EEEEECGGGCEEEEEETT----SEEEEEETTTTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             eEEEEcCCCCEEEEEcCC----CEEEEEECCCCcEeEEEEecCCC-ceeEEEECCCCCEEEEecCCceEEEEECCCCcee
Confidence            999999999999998764    4699999999 788888888876 8999999999999999999999999999999999


Q ss_pred             EEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccc
Q 001163          634 ASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVG  713 (1134)
Q Consensus       634 ~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  713 (1134)
                      ..+..   ...+.+++|+|++.++++++.++...+|......                                      
T Consensus       254 ~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------------------------------------  292 (369)
T 3zwl_B          254 KKYET---DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANE--------------------------------------  292 (369)
T ss_dssp             EEEEC---SSCEEEEEECSSSSEEEEEECCC-------------------------------------------------
T ss_pred             eeecC---CCCceeEEecCCCceEEEeecCCCceEEEEecCC--------------------------------------
Confidence            88873   4578999999999999999999865555432210                                      


Q ss_pred             cCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeee
Q 001163          714 TSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILA  793 (1134)
Q Consensus       714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~  793 (1134)
                                                       ....+++|+.........   +    .+|...|.+++|+|++++|++
T Consensus       293 ---------------------------------~~~~i~~~d~~~~~~~~~---~----~~~~~~v~~~~~s~~~~~l~s  332 (369)
T 3zwl_B          293 ---------------------------------GKFEARFYHKIFEEEIGR---V----QGHFGPLNTVAISPQGTSYAS  332 (369)
T ss_dssp             -----------------------------------CEEEEEETTTCCEEEE---E----ECCSSCEEEEEECTTSSEEEE
T ss_pred             ---------------------------------CcceeEEEecCCCcchhh---e----ecccCcEEEEEECCCCCEEEE
Confidence                                             002345555443211111   1    237789999999999999999


Q ss_pred             eccCCeEEeeecCC
Q 001163          794 LASNAVHKLWKWPR  807 (1134)
Q Consensus       794 ~~~dg~i~vw~~~~  807 (1134)
                      ++.||.+++|++..
T Consensus       333 ~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          333 GGEDGFIRLHHFEK  346 (369)
T ss_dssp             EETTSEEEEEEECH
T ss_pred             EcCCCeEEEEECcc
Confidence            99999999999874

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=5.3e-33  Score=314.24  Aligned_cols=305  Identities=12%  Similarity=0.087  Sum_probs=233.6

Q ss_pred             eecCCCeeEEEEcCCCCeEEEEEeCCC-------cEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEE
Q 001163          353 LNQGSAVKSMDFHPVQQILLVVGTNMG-------DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM  425 (1134)
Q Consensus       353 ~~h~~~V~~v~fsp~g~~lla~gs~dg-------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  425 (1134)
                      +.-..+|++++|+|||+ +||+|+.|.       .|+||++..+.......+.         ......+.+|...|.+++
T Consensus        11 ~~~g~PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~---------~~~~~~l~~~~~~v~s~~   80 (365)
T 4h5i_A           11 YNVGYPAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH---------ILSEFALEDNDDSPTAID   80 (365)
T ss_dssp             EECSSCEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE---------EEEEEECCTTSCCCCEEE
T ss_pred             cCCCCCEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeeee---------eeeEEEccCCCCceEEEE
Confidence            34567899999999998 667876543       5999999876543211111         001112678899998887


Q ss_pred             EcCCCCEEEEE-----------eCCCEEEEEEccCCceeee-ee-----eeecCCCCEEEEEEecCCCceEEEEEeCCCe
Q 001163          426 WSPDGTLFGVA-----------YSKHIVHLYTYHGGDELRN-HL-----EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV  488 (1134)
Q Consensus       426 ~spd~~~las~-----------s~dg~v~iwd~~~~~~~~~-~~-----~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~  488 (1134)
                      ++  ++.+++|           +.|+.+++|++.+...... ..     ....+...+.+++|||||+.+.+++++.|++
T Consensus        81 ~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~  158 (365)
T 4h5i_A           81 AS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAI  158 (365)
T ss_dssp             EE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCE
T ss_pred             eC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCE
Confidence            64  5566665           4577899999876543211 11     1234556799999999999644567778999


Q ss_pred             EEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceee--ecCCCCCeeEEEECcCCCEE
Q 001163          489 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD--YDAPGHSSTMMAYSADGARL  566 (1134)
Q Consensus       489 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l  566 (1134)
                      |+|||+.+++++..+. |...|.+++|+|  +|.++++++.+ .+++|+..++.....  ...+...+.+++|+|+++++
T Consensus       159 i~iwd~~~~~~~~~~~-~~~~V~~v~fsp--dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l  234 (365)
T 4h5i_A          159 MRIIDPSDLTEKFEIE-TRGEVKDLHFST--DGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVL  234 (365)
T ss_dssp             EEEEETTTTEEEEEEE-CSSCCCEEEECT--TSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEE
T ss_pred             EEEeECCCCcEEEEeC-CCCceEEEEEcc--CCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEE
Confidence            9999999999999886 778899999965  55899999855 556666666655443  33455689999999999999


Q ss_pred             EEEecCCCCCeEEEEEeCCCCee----EEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCC
Q 001163          567 FSCGTNKEGESYLVEWNESEGAV----KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGL  642 (1134)
Q Consensus       567 ~~~~~~~~~~~~i~~wd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  642 (1134)
                      ++++.++.....+++|+...+..    ...+.+|.. .|.+++|+|++++|++|+.|++|+|||+.+++++..+.. +|.
T Consensus       235 ~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~-gH~  312 (365)
T 4h5i_A          235 IAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK-GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQ-AHS  312 (365)
T ss_dssp             EEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCS-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETT-SSS
T ss_pred             EEEecCCcceeEEeecccccceecceeeeeecCCCC-CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecC-ccc
Confidence            99998877677899999877643    345667766 899999999999999999999999999999999887531 447


Q ss_pred             CCcceEEEcCCCcEEEEEECCCcEEEEEccCCc
Q 001163          643 QASPCIRFNKEGILLAVSTNDNGIKILANADGI  675 (1134)
Q Consensus       643 ~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~  675 (1134)
                      ..|++++|+|||++||+++.|++|+||++....
T Consensus       313 ~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~  345 (365)
T 4h5i_A          313 FAITEVTISPDSTYVASVSAANTIHIIKLPLNY  345 (365)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEECCTTT
T ss_pred             CCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Confidence            799999999999999999999999999997653

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3.1e-32  Score=313.79  Aligned_cols=256  Identities=11%  Similarity=0.070  Sum_probs=221.2

Q ss_pred             ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCc------eeeeeeeeecCCCCEEEEEEecC----C---CceE
Q 001163          413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGD------ELRNHLEIEAHVGSVNDLAFSYP----N---KQLS  479 (1134)
Q Consensus       413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~------~~~~~~~l~~h~~~V~~v~~s~~----~---~~~~  479 (1134)
                      .+.+|.+.|++++|+|  ++|++|+.||.|++||+.+++      .+.   .+.+|...|.+++|+|+    +   +  +
T Consensus        11 ~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~g~~~~--~   83 (397)
T 1sq9_A           11 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSY---SHFVHKSGLHHVDVLQAIERDAFELC--L   83 (397)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEE---EEECCTTCEEEEEEEEEEETTTEEEE--E
T ss_pred             hhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcce---EEecCCCcEEEEEEecccccCCcccc--E
Confidence            4789999999999999  899999999999999999886      333   57799999999999999    8   7  8


Q ss_pred             EEEEeCCCeEEEEECCCCce-----eEEecCC-----CcCEEEEecccc--CCccE-EEEecCCCcEEEEecCC------
Q 001163          480 VVTCGEDRVIKVWDAVTGTK-----QYIFEGH-----ESPVYSICPHHK--ENIQF-IFSTATDGKIKAWLYDN------  540 (1134)
Q Consensus       480 l~s~s~d~~i~iwd~~~~~~-----~~~~~~h-----~~~v~~~~~~~~--~~~~~-l~s~s~dg~i~vwd~~~------  540 (1134)
                      |++++.|+.|++||+.+++.     +..+..|     ...|.+++|++.  +++.+ |++++.||.|++||+..      
T Consensus        84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  163 (397)
T 1sq9_A           84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN  163 (397)
T ss_dssp             EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred             EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence            99999999999999999887     8889888     599999999722  45588 99999999999999987      


Q ss_pred             CCcee-----ee-------cCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecC---C---CCCceE
Q 001163          541 LGSRV-----DY-------DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG---L---GKRSVG  602 (1134)
Q Consensus       541 ~~~~~-----~~-------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~---~---~~~~v~  602 (1134)
                      .....     .+       ..+...+.+++|+|++ .+++++.+    +.|++||+++++.+..+..   |   .. .+.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~h~~~~~-~i~  237 (397)
T 1sq9_A          164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN----GTVQISELSTLRPLYNFESQHSMINNSN-SIR  237 (397)
T ss_dssp             HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT----SEEEEEETTTTEEEEEEECCC---CCCC-CEE
T ss_pred             cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCC----CcEEEEECCCCceeEEEeccccccccCC-ccc
Confidence            55544     44       4467789999999999 88888754    4699999999999999988   6   55 899


Q ss_pred             EEEEcCCCCEEEEEeCC---CeEEEEEcCCCceeEEEecCC-----------CCCCcceEEEcCCCcEEEEEECCCcEEE
Q 001163          603 VVQFDTTKNRFLAAGDE---FMIKFWDMDNVNLLASIDADG-----------GLQASPCIRFNKEGILLAVSTNDNGIKI  668 (1134)
Q Consensus       603 ~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~v~~sp~~~~l~~~~~dg~i~i  668 (1134)
                      +++|+|++++|++++.|   |.|++||+.+++.+..+....           +...|.+++|+|++++|++++.||.|++
T Consensus       238 ~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  317 (397)
T 1sq9_A          238 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRF  317 (397)
T ss_dssp             EEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred             eEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence            99999999999999999   999999999999998887611           3668999999999999999999999999


Q ss_pred             EEccCCceeEEEec
Q 001163          669 LANADGIRLLRTVE  682 (1134)
Q Consensus       669 w~~~~~~~~~~~~~  682 (1134)
                      ||+.++ ..+..+.
T Consensus       318 wd~~~~-~~~~~~~  330 (397)
T 1sq9_A          318 WDVKTK-ERITTLN  330 (397)
T ss_dssp             EETTTT-EEEEEEE
T ss_pred             EEcCCC-ceeEEEe
Confidence            999887 5555554

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=6e-33  Score=323.08  Aligned_cols=301  Identities=15%  Similarity=0.185  Sum_probs=227.6

Q ss_pred             EecCCCCCceEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcC-CCcEEEEEECCCcEEEE
Q 001163          592 TYHGLGKRSVGVVQFDTT-KNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK-EGILLAVSTNDNGIKIL  669 (1134)
Q Consensus       592 ~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~~~~~dg~i~iw  669 (1134)
                      ....|.. .|++++|+|. ++.|++|+.||.|+|||+.+++....+...+|...|++++|+| ++.+|++++.||+|++|
T Consensus       114 ~~~~~~~-~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw  192 (435)
T 4e54_B          114 KAAPFDR-RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ  192 (435)
T ss_dssp             EEEECSS-CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred             cCCCCCC-CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence            3444544 7999999994 5789999999999999999888777777667788999999998 78999999999999999


Q ss_pred             EccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccccccccc
Q 001163          670 ANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVE  749 (1134)
Q Consensus       670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  749 (1134)
                      |+.++  ....+..                                                                  
T Consensus       193 d~~~~--~~~~~~~------------------------------------------------------------------  204 (435)
T 4e54_B          193 DFKGN--ILRVFAS------------------------------------------------------------------  204 (435)
T ss_dssp             ETTSC--EEEEEEC------------------------------------------------------------------
T ss_pred             eccCC--ceeEEec------------------------------------------------------------------
Confidence            98643  1110000                                                                  


Q ss_pred             ccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCC
Q 001163          750 KSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPS  829 (1134)
Q Consensus       750 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~  829 (1134)
                                                                   . +                                
T Consensus       205 ---------------------------------------------~-~--------------------------------  206 (435)
T 4e54_B          205 ---------------------------------------------S-D--------------------------------  206 (435)
T ss_dssp             ---------------------------------------------C-S--------------------------------
T ss_pred             ---------------------------------------------c-C--------------------------------
Confidence                                                         0 0                                


Q ss_pred             CcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 001163          830 GILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSS  908 (1134)
Q Consensus       830 ~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~  908 (1134)
                                 .+...+.+++|+|++++|++|+ ||.|++||+. ++.+..+.+|...|++++|+|++..++++|+.|+.
T Consensus       207 -----------~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~  274 (435)
T 4e54_B          207 -----------TINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQT  274 (435)
T ss_dssp             -----------SCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSB
T ss_pred             -----------CCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcce
Confidence                       0234456788888888888888 8889999985 45667788899999999999955568999999999


Q ss_pred             EEEEEcccceEEE---eccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEE
Q 001163          909 IQIYNVRVDEVKT---KLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQF  985 (1134)
Q Consensus       909 i~iwd~~~~~~~~---~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~f  985 (1134)
                      |+|||+.+++...   ...+|...|++++|+|+|++|++++.|++|++||+.+++.......  ..........+....|
T Consensus       275 v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  352 (435)
T 4e54_B          275 VKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIP--HPHRHFQHLTPIKAAW  352 (435)
T ss_dssp             CCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECC--CCCCCCSSSCCCBCEE
T ss_pred             eeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEec--ccccccccceeEEEEE
Confidence            9999998876443   3467999999999999999999999999999999998764321111  0000000012334456


Q ss_pred             cCCCCEEEEE-------------eeceEEEEeCCCcccceeeccCCCccCEEEE-EEccCCCEEEEEecCCcEEEeecCC
Q 001163          986 HLDQTHLLAV-------------HETQIAIYEAPKLECLKQFVPREASGPITHA-TYSCDSQSIYVAFEEGSVGVLTAST 1051 (1134)
Q Consensus       986 s~dg~~l~~~-------------~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~-~~s~dg~~l~s~s~Dg~i~vwd~~~ 1051 (1134)
                      +|++.+++++             .++.|++||..+++.+..+. .+|...|.++ +|+|||++|++|+ |++|+||++.+
T Consensus       353 ~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~-~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~  430 (435)
T 4e54_B          353 HPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY-DPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQE  430 (435)
T ss_dssp             CSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC-CSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-
T ss_pred             cCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe-CCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCc
Confidence            6666655553             23579999999999888775 3678888887 6999999999886 78999999999


Q ss_pred             Ccce
Q 001163         1052 LRLR 1055 (1134)
Q Consensus      1052 ~~~~ 1055 (1134)
                      ++..
T Consensus       431 gk~r  434 (435)
T 4e54_B          431 ARTR  434 (435)
T ss_dssp             ----
T ss_pred             Ceee
Confidence            8753

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=6.7e-32  Score=334.36  Aligned_cols=257  Identities=19%  Similarity=0.251  Sum_probs=218.4

Q ss_pred             ccccCCCCEEEEEEcCC-CCEEEEEeCCCEEEEEEccCCcee--eeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeE
Q 001163          413 LSSDYTASVNRVMWSPD-GTLFGVAYSKHIVHLYTYHGGDEL--RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVI  489 (1134)
Q Consensus       413 ~~~~h~~~V~~l~~spd-~~~las~s~dg~v~iwd~~~~~~~--~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i  489 (1134)
                      .+.+|.+.|++++|+|+ +++|++|+.|++|++||+.+....  .....+.+|...|.+++|+|+++  +|+||+.|++|
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~--~l~sgs~Dg~v  454 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSGSWDGEL  454 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC--EEEEEeCCCcE
Confidence            36799999999999996 579999999999999999865321  12336889999999999999999  89999999999


Q ss_pred             EEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeee---cCCCCCeeEEEECcCC--C
Q 001163          490 KVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY---DAPGHSSTMMAYSADG--A  564 (1134)
Q Consensus       490 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~s~~~--~  564 (1134)
                      ++||+.+++.+..+.+|...|.+++|+++  +.+|++++.|++|++||..........   ..|...|.+++|+|++  .
T Consensus       455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  532 (694)
T 3dm0_A          455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLD--NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP  532 (694)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTT--SSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred             EEEECCCCcceeEEeCCCCCEEEEEEeCC--CCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence            99999999999999999999999999654  488999999999999997643222221   3456689999999987  5


Q ss_pred             EEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCC
Q 001163          565 RLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQA  644 (1134)
Q Consensus       565 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  644 (1134)
                      .+++++.|+    .|++||+.+++....+.+|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+..   ...
T Consensus       533 ~l~s~s~d~----~v~vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~---~~~  604 (694)
T 3dm0_A          533 TIVSASWDK----TVKVWNLSNCKLRSTLAGHTG-YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA---NSV  604 (694)
T ss_dssp             EEEEEETTS----CEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC---SSC
T ss_pred             eEEEEeCCC----eEEEEECCCCcEEEEEcCCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC---CCc
Confidence            788887654    599999999999999999887 899999999999999999999999999999998877654   346


Q ss_pred             cceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEecc
Q 001163          645 SPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVES  683 (1134)
Q Consensus       645 v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~  683 (1134)
                      +.+++|+|++.++++++ ++.|++||+.++ ..+..+..
T Consensus       605 v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~-~~~~~~~~  641 (694)
T 3dm0_A          605 IHALCFSPNRYWLCAAT-EHGIKIWDLESK-SIVEDLKV  641 (694)
T ss_dssp             EEEEEECSSSSEEEEEE-TTEEEEEETTTT-EEEEEECC
T ss_pred             EEEEEEcCCCcEEEEEc-CCCEEEEECCCC-CChhhhcc
Confidence            89999999998888766 556999999987 55555543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.7e-32  Score=308.47  Aligned_cols=203  Identities=14%  Similarity=0.112  Sum_probs=169.6

Q ss_pred             CCCCeeEEEEcCCCCeEEEee---CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccce
Q 001163          842 PEDAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE  918 (1134)
Q Consensus       842 h~~~v~~v~~s~dg~~la~~s---dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~  918 (1134)
                      +...+.+++|||||+++++++   |++|+|||+.+++++..+. |...|.+++|+| +++++++++.+ .+++|+..+++
T Consensus       132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~  208 (365)
T 4h5i_A          132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGS  208 (365)
T ss_dssp             TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCC
T ss_pred             cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCc
Confidence            556788999999999987654   6899999999999999987 778899999999 89999999854 57777777776


Q ss_pred             EE--EeccCccCceEEEEEeeCCCEEEEEeCCC----cEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEE
Q 001163          919 VK--TKLKGHQKRITGLAFSNTLNVLVSSGADS----QLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHL  992 (1134)
Q Consensus       919 ~~--~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l  992 (1134)
                      .+  ....+|...|.+++|+|+++++++++.|+    .+++|++.......... ....++.   ..|.+++|||||++|
T Consensus       209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~---~~V~~~~~Spdg~~l  284 (365)
T 4h5i_A          209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRS-KQVTNRF---KGITSMDVDMKGELA  284 (365)
T ss_dssp             EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEE-EEEESSC---SCEEEEEECTTSCEE
T ss_pred             ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceee-eeecCCC---CCeEeEEECCCCCce
Confidence            55  34567999999999999999999999887    58889887654322222 2223333   469999999999999


Q ss_pred             EE-EeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCC
Q 001163          993 LA-VHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTL 1052 (1134)
Q Consensus       993 ~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~ 1052 (1134)
                      |+ +.|++|+|||+.+++++..+. .+|...|++++|||||++|||+|.|++|+|||+...
T Consensus       285 asgs~D~~V~iwd~~~~~~~~~~~-~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          285 VLASNDNSIALVKLKDLSMSKIFK-QAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEET-TSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEEcCCCEEEEEECCCCcEEEEec-CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            99 588999999999999888764 389999999999999999999999999999999754

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=5.3e-32  Score=297.17  Aligned_cols=252  Identities=15%  Similarity=0.248  Sum_probs=212.8

Q ss_pred             cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecC--CCceEEEEEeCCCeEEE
Q 001163          414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP--NKQLSVVTCGEDRVIKV  491 (1134)
Q Consensus       414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~--~~~~~l~s~s~d~~i~i  491 (1134)
                      +.+|.+.|++++|+|+|++||+|+.|++|+|||+.++. ......+.+|.++|++++|+++  ++  +|+||+.|++|++
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-~~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~i   81 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVMI   81 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-BCCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEEE
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-cEEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEEE
Confidence            67899999999999999999999999999999997542 1123368899999999999864  66  8999999999999


Q ss_pred             EECCCCc--eeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCc--eeeecCCCCCeeEEEECcC-----
Q 001163          492 WDAVTGT--KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS--RVDYDAPGHSSTMMAYSAD-----  562 (1134)
Q Consensus       492 wd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~~-----  562 (1134)
                      ||+.+++  .+..+.+|...|.+++|+++.++.+|++++.|+.|++||++....  ...+..|...|.+++|+|+     
T Consensus        82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~  161 (297)
T 2pm7_B           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  161 (297)
T ss_dssp             EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred             EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence            9999874  567788999999999998875568999999999999999986532  3456678889999999997     


Q ss_pred             --------CCEEEEEecCCCCCeEEEEEeCCCCe----eEEEecCCCCCceEEEEEcCCC---CEEEEEeCCCeEEEEEc
Q 001163          563 --------GARLFSCGTNKEGESYLVEWNESEGA----VKRTYHGLGKRSVGVVQFDTTK---NRFLAAGDEFMIKFWDM  627 (1134)
Q Consensus       563 --------~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~  627 (1134)
                              +++|++++.|+    .|++||+.+++    ....+.+|.. .|.+++|+|++   .+|++++.|++|++||+
T Consensus       162 ~~~~~~~~~~~l~sgs~D~----~v~lwd~~~~~~~~~~~~~l~~H~~-~V~~v~~sp~~~~~~~las~s~D~~v~iWd~  236 (297)
T 2pm7_B          162 GEHNGTKESRKFVTGGADN----LVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ  236 (297)
T ss_dssp             --------CCEEEEEETTS----CEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred             ccCCCCCCcceEEEEcCCC----cEEEEEEcCCCceEEEEEEecCCCC-ceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence                    57899998755    49999998765    5677888876 89999999985   89999999999999999


Q ss_pred             CCCce---eEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccC
Q 001163          628 DNVNL---LASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD  673 (1134)
Q Consensus       628 ~~~~~---~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~  673 (1134)
                      ++...   ...+..+.+...|.+++|+|+|++|++++.||.|++|+...
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             CCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            87531   22232235567899999999999999999999999999763

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.2e-31  Score=308.65  Aligned_cols=287  Identities=17%  Similarity=0.269  Sum_probs=241.4

Q ss_pred             CeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEe
Q 001163          358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY  437 (1134)
Q Consensus       358 ~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s  437 (1134)
                      .+.+++|++  ..+ ++++.||.|+|||+.+++.....                  ...|...|.+++|+|++++|++|+
T Consensus        95 ~~~~~~~s~--~~l-~~~~~d~~v~lw~~~~~~~~~~~------------------~~~~~~~v~~v~~s~~~~~l~~~~  153 (401)
T 4aez_A           95 YLNLLDWSN--LNV-VAVALERNVYVWNADSGSVSALA------------------ETDESTYVASVKWSHDGSFLSVGL  153 (401)
T ss_dssp             TCBCEEECT--TSE-EEEEETTEEEEEETTTCCEEEEE------------------ECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             eEEEEeecC--CCE-EEEECCCeEEEeeCCCCcEeEee------------------ecCCCCCEEEEEECCCCCEEEEEC
Confidence            355677775  334 57789999999999998765431                  234889999999999999999999


Q ss_pred             CCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECC-CCceeEEecCCCcCEEEEecc
Q 001163          438 SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV-TGTKQYIFEGHESPVYSICPH  516 (1134)
Q Consensus       438 ~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~~h~~~v~~~~~~  516 (1134)
                      .||.|++||+.+++.+.   .+.+|...|.+++|+  +.  ++++++.|+.|++||+. .+..+..+.+|...|.+++|+
T Consensus       154 ~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~  226 (401)
T 4aez_A          154 GNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR  226 (401)
T ss_dssp             TTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred             CCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEc
Confidence            99999999999988665   677999999999994  55  79999999999999998 567788899999999999997


Q ss_pred             ccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCC
Q 001163          517 HKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL  596 (1134)
Q Consensus       517 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~  596 (1134)
                      +  ++.+|++++.|+.|++||+........+..+...|.+++|+|++..+++.+. +..++.|++||+.+++.+..+..+
T Consensus       227 ~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~~~~~~~~~  303 (401)
T 4aez_A          227 S--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGARVNTVDAG  303 (401)
T ss_dssp             T--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCCEEEEEECS
T ss_pred             C--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCCEEEEEeCC
Confidence            6  5589999999999999999988888888888889999999998765555431 122557999999999999888643


Q ss_pred             CCCceEEEEEcCCCCEEEEEe--CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163          597 GKRSVGVVQFDTTKNRFLAAG--DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       597 ~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                        ..+.+++|+|+++++++++  .||.|++||+.+++........++...|.+++|+|++.+|++++.||.|++|++.++
T Consensus       304 --~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~  381 (401)
T 4aez_A          304 --SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG  381 (401)
T ss_dssp             --SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred             --CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence              3799999999999999954  899999999999877766554456789999999999999999999999999999887


Q ss_pred             cee
Q 001163          675 IRL  677 (1134)
Q Consensus       675 ~~~  677 (1134)
                      ...
T Consensus       382 ~~~  384 (401)
T 4aez_A          382 DHV  384 (401)
T ss_dssp             ---
T ss_pred             ccc
Confidence            433

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1e-33  Score=323.66  Aligned_cols=286  Identities=14%  Similarity=0.064  Sum_probs=223.0

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCc--cceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSR--ERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL  432 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~  432 (1134)
                      +.+.|++++|+|+|+ ++|+|+.||.|+|||+.++  +.+.                   .+.+|...|.+++|+|++++
T Consensus        10 ~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~   69 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHAR-------------------TFSDHDKIVTCVDWAPKSNR   69 (377)
T ss_dssp             CSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECC-------------------CBCCCSSCEEEEEECTTTCC
T ss_pred             CCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEE-------------------EEecCCceEEEEEEeCCCCE
Confidence            567899999999999 5689999999999999887  3332                   26789999999999999999


Q ss_pred             EEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCc---eeEEecC-CCc
Q 001163          433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT---KQYIFEG-HES  508 (1134)
Q Consensus       433 las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~---~~~~~~~-h~~  508 (1134)
                      |++++.|+.|++||+.+++.......+.+|...|.+++|+|+++  +|++++.|+.|++||+.+++   ....+.+ |..
T Consensus        70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~  147 (377)
T 3dwl_C           70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS  147 (377)
T ss_dssp             EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred             EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence            99999999999999998873333446788999999999999999  79999999999999999887   4778887 999


Q ss_pred             CEEEEeccccCCccEEEEecCCCcEEEEecCCC------------------CceeeecCCCCCeeEEEECcCCCEEEEEe
Q 001163          509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNL------------------GSRVDYDAPGHSSTMMAYSADGARLFSCG  570 (1134)
Q Consensus       509 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  570 (1134)
                      .|.+++|++  ++.+|++++.|+.|++||+...                  .....+ .+...|.+++|+|++++|++++
T Consensus       148 ~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~  224 (377)
T 3dwl_C          148 TILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAG  224 (377)
T ss_dssp             CEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEE
T ss_pred             CeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEe
Confidence            999999976  4589999999999999998532                  222334 6777899999999999999998


Q ss_pred             cCCCCCeEEEEEeCCCCee----EEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc---------------
Q 001163          571 TNKEGESYLVEWNESEGAV----KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN---------------  631 (1134)
Q Consensus       571 ~~~~~~~~i~~wd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------------  631 (1134)
                      .++    .|++||+.+++.    +..+.+|.. .+.+++|+|++++|++++.++.+ +|+.....               
T Consensus       225 ~d~----~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  298 (377)
T 3dwl_C          225 HDS----SVTIAYPSAPEQPPRALITVKLSQL-PLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTS  298 (377)
T ss_dssp             TTT----EEC-CEECSTTSCEEECCCEECSSS-CEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCC
T ss_pred             CCC----cEEEEECCCCCCcceeeEeecCCCC-ceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccc
Confidence            644    699999999887    777888876 89999999999999888877666 66654211               


Q ss_pred             ------------------------eeEEEec-----------CCCCCCcceEEEcCC-Cc---EEEEEECCCcEEEEEc
Q 001163          632 ------------------------LLASIDA-----------DGGLQASPCIRFNKE-GI---LLAVSTNDNGIKILAN  671 (1134)
Q Consensus       632 ------------------------~~~~~~~-----------~~~~~~v~~v~~sp~-~~---~l~~~~~dg~i~iw~~  671 (1134)
                                              .......           ..|...|.++++.+. +.   .|++++.||.|++||+
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          299 FTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             BSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                                    0000000           125678899987653 33   6999999999999984

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.2e-33  Score=318.56  Aligned_cols=294  Identities=16%  Similarity=0.168  Sum_probs=223.0

Q ss_pred             ccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC
Q 001163          775 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN  854 (1134)
Q Consensus       775 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d  854 (1134)
                      +...|.+++|+|+|++|++++.|+.|++|++.....                    .. ...+.+  |...|.+++|+|+
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~--------------------~~-~~~~~~--h~~~v~~~~~s~~   66 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW--------------------KH-ARTFSD--HDKIVTCVDWAPK   66 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE--------------------EE-CCCBCC--CSSCEEEEEECTT
T ss_pred             CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce--------------------EE-EEEEec--CCceEEEEEEeCC
Confidence            457899999999999999999999999998763200                    11 112333  8999999999999


Q ss_pred             CCeEEEee-CCeEEEEEccCCe---EEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccce---EEEeccC-c
Q 001163          855 DSYVMSAS-GGKISLFNMMTFK---TMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE---VKTKLKG-H  926 (1134)
Q Consensus       855 g~~la~~s-dg~i~lwd~~~~~---~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~---~~~~l~~-h  926 (1134)
                      +++|++++ |++|++||+.+++   ....+.+|...|.+++|+| ++++|++|+.|+.|++||+.+++   ....+.+ |
T Consensus        67 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h  145 (377)
T 3dwl_C           67 SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPL  145 (377)
T ss_dssp             TCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSC
T ss_pred             CCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeeccc
Confidence            99999999 8999999999877   6777888999999999999 89999999999999999999887   4677777 9


Q ss_pred             cCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCcccc-------------ceeeeecCCCCCCCCCceEEEEcCCCCEEE
Q 001163          927 QKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQA-------------SKFLTIPNGRTASALADTRVQFHLDQTHLL  993 (1134)
Q Consensus       927 ~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~-------------~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~  993 (1134)
                      ...|++++|+|++++|++++.|++|++||+...+...             ...+... +|.   ..|.+++|+|+|++|+
T Consensus       146 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~v~~~~~sp~~~~l~  221 (377)
T 3dwl_C          146 RSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSG---GWVHAVGFSPSGNALA  221 (377)
T ss_dssp             CSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCS---SSEEEEEECTTSSCEE
T ss_pred             CCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCC---ceEEEEEECCCCCEEE
Confidence            9999999999999999999999999999986433111             1233333 443   5799999999999999


Q ss_pred             E-EeeceEEEEeCCCccc----ceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecC-CCcc-eeecC-------
Q 001163          994 A-VHETQIAIYEAPKLEC----LKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTAS-TLRL-RCRIN------- 1059 (1134)
Q Consensus       994 ~-~~d~~i~iwd~~~~~~----~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~-~~~~-~~~~~------- 1059 (1134)
                      + +.|+.|++||+.+++.    +..+.  +|...|.+++|+|||++|++++.|+.+ +|+.. ++.. ...+.       
T Consensus       222 ~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  298 (377)
T 3dwl_C          222 YAGHDSSVTIAYPSAPEQPPRALITVK--LSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTS  298 (377)
T ss_dssp             EEETTTEEC-CEECSTTSCEEECCCEE--CSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCC
T ss_pred             EEeCCCcEEEEECCCCCCcceeeEeec--CCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccc
Confidence            8 5889999999999987    66665  789999999999999999999877766 55554 3311 11111       


Q ss_pred             ------------------------------------CCcccCCCCCCCceeEEEEecCCCCC---EEEEEecCCcEEEEe
Q 001163         1060 ------------------------------------PTAYLPTNPSLRVYPLVIAGNPTDPN---QFALGLTDGGVYIIE 1100 (1134)
Q Consensus      1060 ------------------------------------~~~~~~~~h~~~v~~~~~~~~p~~~~---~l~s~~~Dg~v~vW~ 1100 (1134)
                                                          ....+...|.+.|..+.+  .+.++.   .|++++.||.|++||
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~--~~~~~~~~~~~~s~g~Dg~i~iWd  376 (377)
T 3dwl_C          299 FTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRP--YAGTPGNITAFTSSGTDGRVVLWT  376 (377)
T ss_dssp             BSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEE--EEEETTEEEEEEEEETTSEEEEEC
T ss_pred             cccccccccccccccccccccccccccchhhccccccccccCccccceeEEEec--cCCCCCceEEEEeecCCCcEEEec
Confidence                                                000122348899988843  343344   799999999999998


Q ss_pred             C
Q 001163         1101 P 1101 (1134)
Q Consensus      1101 ~ 1101 (1134)
                      +
T Consensus       377 l  377 (377)
T 3dwl_C          377 L  377 (377)
T ss_dssp             C
T ss_pred             C
Confidence            6

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.5e-31  Score=306.74  Aligned_cols=283  Identities=14%  Similarity=0.239  Sum_probs=240.7

Q ss_pred             CCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEE
Q 001163          357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA  436 (1134)
Q Consensus       357 ~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~  436 (1134)
                      ...+.|+||+++  +||+|. |++|+|||+.+|+.+....                 +.+|...|++|+|+|||++||+|
T Consensus       106 ~y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~~-----------------~~~~~~~V~sv~fspdg~~lasg  165 (420)
T 4gga_A          106 YYLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGEYISSVAWIKEGNYLAVG  165 (420)
T ss_dssp             TTCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTCCEEEEEECTTSSEEEEE
T ss_pred             ccceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCCcEEEEEECCCCCEEEEE
Confidence            346789999865  677775 8999999999998665311                 46788999999999999999999


Q ss_pred             eCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC-ceeEEecCCCcCEEEEec
Q 001163          437 YSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHESPVYSICP  515 (1134)
Q Consensus       437 s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~  515 (1134)
                      +.||+|+|||+.+++.+.   .+.+|...|.+++|+  +.  +|++|+.|+.+++||.... ..+..+.+|...+..+.+
T Consensus       166 s~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~  238 (420)
T 4gga_A          166 TSSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW  238 (420)
T ss_dssp             ETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred             ECCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeee
Confidence            999999999999998766   688999999998875  55  7999999999999998864 556788999999999998


Q ss_pred             cccCCccEEEEecCCCcEEEEecCCCCc----eeeecCCCCCeeEEEECcCCCEE-EEEecCCCCCeEEEEEeCCCCeeE
Q 001163          516 HHKENIQFIFSTATDGKIKAWLYDNLGS----RVDYDAPGHSSTMMAYSADGARL-FSCGTNKEGESYLVEWNESEGAVK  590 (1134)
Q Consensus       516 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l-~~~~~~~~~~~~i~~wd~~~~~~~  590 (1134)
                      .+  ++.++++++.|+.+++|+......    ......+...|.+++|+|++..+ ++++.  ..++.|++||+.+++..
T Consensus       239 ~~--~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g--s~D~~I~iwd~~t~~~~  314 (420)
T 4gga_A          239 AP--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG--TSDRHIRIWNVCSGACL  314 (420)
T ss_dssp             CT--TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC--TTTCEEEEEETTTTEEE
T ss_pred             cC--CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee--cCCCEEEEEeCCccccc
Confidence            65  458999999999999999987553    33455677799999999977644 44443  33567999999999999


Q ss_pred             EEecCCCCCceEEEEEcCCCCEEEEEe--CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEE
Q 001163          591 RTYHGLGKRSVGVVQFDTTKNRFLAAG--DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKI  668 (1134)
Q Consensus       591 ~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~i  668 (1134)
                      ..+..+.  .+.++.|+++++.+++++  .|+.|+|||+.+++++..+.+|  ...|.+++|+|+|.+|++|+.||+|++
T Consensus       315 ~~~~~~~--~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH--~~~V~~l~~spdg~~l~S~s~D~tvri  390 (420)
T 4gga_A          315 SAVDAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH--TSRVLSLTMSPDGATVASAAADETLRL  390 (420)
T ss_dssp             EEEECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSCEEEEETTTEEEE
T ss_pred             eeecccc--ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEcCCCCEEEEEecCCeEEE
Confidence            9888765  688899999999998876  7899999999999999999865  779999999999999999999999999


Q ss_pred             EEccCC
Q 001163          669 LANADG  674 (1134)
Q Consensus       669 w~~~~~  674 (1134)
                      |++.+.
T Consensus       391 Wdv~~~  396 (420)
T 4gga_A          391 WRCFEL  396 (420)
T ss_dssp             ECCSCS
T ss_pred             EECCCC
Confidence            998765

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=9.6e-32  Score=305.83  Aligned_cols=250  Identities=16%  Similarity=0.230  Sum_probs=211.0

Q ss_pred             ccccCCCCEEEEEEcCC----CCEEEEEeCCCEEEEEEccCCceeeeeeeee--cCCCCEEEEEEecC----CCceEEEE
Q 001163          413 LSSDYTASVNRVMWSPD----GTLFGVAYSKHIVHLYTYHGGDELRNHLEIE--AHVGSVNDLAFSYP----NKQLSVVT  482 (1134)
Q Consensus       413 ~~~~h~~~V~~l~~spd----~~~las~s~dg~v~iwd~~~~~~~~~~~~l~--~h~~~V~~v~~s~~----~~~~~l~s  482 (1134)
                      +..+|.+.|++++|+|+    ..++++++.++.|++||+.+++.+.......  .|...|.+++|+|+    +.  +|++
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~~   90 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLAV   90 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEEE
Confidence            35689999999999984    5567777777799999999887665443332  37788999999999    45  7999


Q ss_pred             EeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeee---cCCCCCeeEEEE
Q 001163          483 CGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY---DAPGHSSTMMAY  559 (1134)
Q Consensus       483 ~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~  559 (1134)
                      |+.|+.|++||+.+++.+..+.+|...|.+++|++. ++.+|++++.||.|++||+...+....+   ..+...|.+++|
T Consensus        91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  169 (366)
T 3k26_A           91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY  169 (366)
T ss_dssp             EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred             ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence            999999999999999999999999999999999762 4489999999999999999988777776   567889999999


Q ss_pred             CcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecC----------------------------CCCCceEEEEEcCCCC
Q 001163          560 SADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG----------------------------LGKRSVGVVQFDTTKN  611 (1134)
Q Consensus       560 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~----------------------------~~~~~v~~~~~~~~~~  611 (1134)
                      +|+++++++++.++    .|++||+.+++....+..                            |.. .|.+++|+  ++
T Consensus       170 ~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~--~~  242 (366)
T 3k26_A          170 DLLGEKIMSCGMDH----SLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN-YVDCVRWL--GD  242 (366)
T ss_dssp             CTTSSEEEEEETTS----CEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS-CCCEEEEE--TT
T ss_pred             CCCCCEEEEecCCC----CEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc-eEEEEEEc--CC
Confidence            99999999998754    499999998765443332                            554 89999998  67


Q ss_pred             EEEEEeCCCeEEEEEcCCCce--------------eEEEecCCCCCCcceEEEcCC--CcEEEEEECCCcEEEEEccCC
Q 001163          612 RFLAAGDEFMIKFWDMDNVNL--------------LASIDADGGLQASPCIRFNKE--GILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       612 ~l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~v~~sp~--~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      ++++++.||.|++||+.++..              +..+..+  ...|.+++|+|+  +++|++++.||.|++|++.++
T Consensus       243 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~  319 (366)
T 3k26_A          243 LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE  319 (366)
T ss_dssp             EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred             EEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence            999999999999999988754              5555544  668999999999  999999999999999998776

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.3e-31  Score=302.19  Aligned_cols=247  Identities=15%  Similarity=0.159  Sum_probs=215.6

Q ss_pred             cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163          414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD  493 (1134)
Q Consensus       414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd  493 (1134)
                      +..|.++|++++|+|++++||+|+.|+.|++||+.+++ ......+.+|...|.+++|+|+++  +|++++.|+.|++||
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd   80 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT   80 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence            34589999999999999999999999999999999886 222336889999999999999999  899999999999999


Q ss_pred             CCCCceeEE--ecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCc----eeeecCCCCCeeEEEECcCCCEEE
Q 001163          494 AVTGTKQYI--FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS----RVDYDAPGHSSTMMAYSADGARLF  567 (1134)
Q Consensus       494 ~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~  567 (1134)
                      +.+++....  +..|...|.+++|++  ++.+|++++.|+.|++||++....    ......+...|.+++|+|++++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  158 (372)
T 1k8k_C           81 LKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA  158 (372)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred             CCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence            998875544  467999999999965  458999999999999999988763    222355677999999999999999


Q ss_pred             EEecCCCCCeEEEEEeC------------------CCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 001163          568 SCGTNKEGESYLVEWNE------------------SEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN  629 (1134)
Q Consensus       568 ~~~~~~~~~~~i~~wd~------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  629 (1134)
                      +++.++    .|++||+                  ..++.+..+..|.. .+.+++|+|++++|++++.||.|++||+.+
T Consensus       159 ~~~~dg----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  233 (372)
T 1k8k_C          159 AGSCDF----KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGSRVAWVSHDSTVCLADADK  233 (372)
T ss_dssp             EEETTS----CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred             EEcCCC----CEEEEEcccccccccccccccccccchhhheEecCCCCC-eEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            998654    5999995                  46788888887776 899999999999999999999999999999


Q ss_pred             CceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccC
Q 001163          630 VNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD  673 (1134)
Q Consensus       630 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~  673 (1134)
                      ++.+..+..+  ...+.+++|+|++.+++++ .|+.|++|++.+
T Consensus       234 ~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          234 KMAVATLASE--TLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             TTEEEEEECS--SCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             CceeEEEccC--CCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            9999998865  5689999999999988877 999999999987

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.1e-31  Score=301.88  Aligned_cols=252  Identities=14%  Similarity=0.198  Sum_probs=208.0

Q ss_pred             ccccCCCCEEEEEEcCCCCEE-EEEeC---CCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecC---CCceEEEEEeC
Q 001163          413 LSSDYTASVNRVMWSPDGTLF-GVAYS---KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP---NKQLSVVTCGE  485 (1134)
Q Consensus       413 ~~~~h~~~V~~l~~spd~~~l-as~s~---dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~---~~~~~l~s~s~  485 (1134)
                      ++.+|...|.+++|+|++..+ ++|+.   |+.|+|||+.+++....  ...+|...|.+++|+|+   +.  +|++++.
T Consensus        13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~l~~~~~   88 (357)
T 3i2n_A           13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQR--YLATGDF   88 (357)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTC--CEEEEET
T ss_pred             hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCc--eEEEecC
Confidence            457899999999999999655 55665   99999999998875432  23479999999999998   56  7999999


Q ss_pred             CCeEEEEECCCCc-eeEEecCCCcCEEEEeccc----cCCccEEEEecCCCcEEEEecCCCC-ceeeecCCCC----Cee
Q 001163          486 DRVIKVWDAVTGT-KQYIFEGHESPVYSICPHH----KENIQFIFSTATDGKIKAWLYDNLG-SRVDYDAPGH----SST  555 (1134)
Q Consensus       486 d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~~----~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~----~v~  555 (1134)
                      |+.|++||+.+++ .+..+.+|...|.+++|.+    ++++.+|++++.|+.|++||+.... ....+..+..    .+.
T Consensus        89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~  168 (357)
T 3i2n_A           89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCW  168 (357)
T ss_dssp             TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEE
T ss_pred             CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceE
Confidence            9999999999998 8899999999999997643    5667899999999999999999876 4555544433    788


Q ss_pred             EEE----ECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcC---CCCEEEEEeCCCeEEEEEcC
Q 001163          556 MMA----YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT---TKNRFLAAGDEFMIKFWDMD  628 (1134)
Q Consensus       556 ~~~----~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~  628 (1134)
                      +++    |+|+++++++++.++    .|++||+++++.... ..+.. .+.+++|+|   +++++++++.||.|++||++
T Consensus       169 ~~~~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~~~-~~~~~-~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  242 (357)
T 3i2n_A          169 TVAFGNAYNQEERVVCAGYDNG----DIKLFDLRNMALRWE-TNIKN-GVCSLEFDRKDISMNKLVATSLEGKFHVFDMR  242 (357)
T ss_dssp             EEEEECCCC-CCCEEEEEETTS----EEEEEETTTTEEEEE-EECSS-CEEEEEESCSSSSCCEEEEEESTTEEEEEEEE
T ss_pred             EEEEEeccCCCCCEEEEEccCC----eEEEEECccCceeee-cCCCC-ceEEEEcCCCCCCCCEEEEECCCCeEEEEeCc
Confidence            888    789999999997643    699999999987554 33443 899999999   89999999999999999998


Q ss_pred             CCceeEEEe---cCCCCCCcceEEEcCCCc-EEEEEECCCcEEEEEccCC
Q 001163          629 NVNLLASID---ADGGLQASPCIRFNKEGI-LLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       629 ~~~~~~~~~---~~~~~~~v~~v~~sp~~~-~l~~~~~dg~i~iw~~~~~  674 (1134)
                      +++.+..+.   ..++...|.+++|+|++. ++++++.||.|++|++..+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  292 (357)
T 3i2n_A          243 TQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP  292 (357)
T ss_dssp             EEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECC
T ss_pred             CCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCC
Confidence            877655443   124477899999999998 8999999999999999876

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-32  Score=308.76  Aligned_cols=315  Identities=11%  Similarity=0.048  Sum_probs=240.2

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la  434 (1134)
                      -...|.+|+|||||+ ++|+++.|++|+  |...++.                      +.+|...|.+++|+|+|    
T Consensus        14 ~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg----   64 (588)
T 2j04_A           14 FEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE----   64 (588)
T ss_dssp             CSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC----
T ss_pred             hhccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC----
Confidence            357899999999999 679999999999  6444432                      46899999999999999    


Q ss_pred             EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCc-----C
Q 001163          435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES-----P  509 (1134)
Q Consensus       435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~-----~  509 (1134)
                         .++.+.+|+.+....+    .+ .|...|.+++|||+|+  .|++++.||.|++||..+  ++..+. |..     .
T Consensus        65 ---~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~s  131 (588)
T 2j04_A           65 ---FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRT  131 (588)
T ss_dssp             ---CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTC
T ss_pred             ---CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCcccccc
Confidence               4555555554322211    12 5688999999999999  799999999999999543  677777 665     4


Q ss_pred             EEEEeccccCCccEEEEecCCCcEEEEecCCCCc-------eeee----cCCCCCeeEEEECcCCCEEEEEecCCCCCeE
Q 001163          510 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS-------RVDY----DAPGHSSTMMAYSADGARLFSCGTNKEGESY  578 (1134)
Q Consensus       510 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-------~~~~----~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~  578 (1134)
                      |.+++|+|  ||++|++|+.||+|++||+..+..       ...+    .+|...|.+++|+|||  +++++.|    ..
T Consensus       132 v~svafSP--DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D----~t  203 (588)
T 2j04_A          132 YHCFEWNP--IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSN----NS  203 (588)
T ss_dssp             EEEEEECS--SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETT----CC
T ss_pred             EEEEEEcC--CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCC----Ce
Confidence            99999965  569999999999999999987643       2333    4566799999999999  6666654    35


Q ss_pred             EEEEeCCCCee---EEEec-CCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEE--cC
Q 001163          579 LVEWNESEGAV---KRTYH-GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRF--NK  652 (1134)
Q Consensus       579 i~~wd~~~~~~---~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~--sp  652 (1134)
                      +++||+.++..   ..++. +|. ..|.+++|+  ++.+++++ ++.|++||..+++......  +|...+..++|  +|
T Consensus       204 VrlWd~~~~~~~~~~~tL~~~h~-~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~--gh~~~V~~va~~~s~  277 (588)
T 2j04_A          204 VFSMTVSASSHQPVSRMIQNASR-RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKT--GSLENFHIIPLNHEK  277 (588)
T ss_dssp             EEEECCCSSSSCCCEEEEECCCS-SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEEC--SCCSCCCEEEETTCS
T ss_pred             EEEEECCCCccccceeeeccccc-CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEc--CCCceEEEEEeeeCC
Confidence            99999988873   35664 554 489999999  58898887 6999999999887744443  35778999999  99


Q ss_pred             CCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCC
Q 001163          653 EGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSND  732 (1134)
Q Consensus       653 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  732 (1134)
                      ++..+++++.||+ ++|....    +.                                ++                   
T Consensus       278 d~~~La~a~edG~-klw~~d~----~~--------------------------------~s-------------------  301 (588)
T 2j04_A          278 ESTILLMSNKTSY-KVLLEDE----LH--------------------------------VT-------------------  301 (588)
T ss_dssp             SCEEEEECSSCEE-EEEESSS----EE--------------------------------EE-------------------
T ss_pred             CCCEEEEEcCCCC-EEEeecc----EE--------------------------------EC-------------------
Confidence            9999999999999 9998761    11                                11                   


Q ss_pred             CccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeecc
Q 001163          733 SRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALAS  796 (1134)
Q Consensus       733 ~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~  796 (1134)
                          +++..+++  .|+++++|+.....    ...+     .+...|.+++|+|||+.+++++.
T Consensus       302 ----pd~~l~a~--~d~~v~lW~~~g~~----l~~~-----~~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          302 ----ADNIIAPY--LEKKFKKWSTIWNE----FNNY-----ETTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             ----CCCSSHHH--HHHHHHHTTTTTTS----SSSS-----CCEEEEEEEEECTTSSEEEEEEE
T ss_pred             ----CCceEEEE--cCCEEEEEECCCCc----eeee-----ccceEEEEEEECCCCCEEEEEEe
Confidence                11222233  48999999875422    1111     14677999999999999888774

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3e-31  Score=291.13  Aligned_cols=247  Identities=13%  Similarity=0.188  Sum_probs=205.4

Q ss_pred             ecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCc--cceeeeceeeeeccccCccccccccccCCCCEEEEEEcC--C
Q 001163          354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSR--ERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--D  429 (1134)
Q Consensus       354 ~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d  429 (1134)
                      +|.+.|++++|+|+|+ +||+|+.|++|+|||+.++  +.+.                   .+.+|.+.|.+++|+|  +
T Consensus         7 ~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~-------------------~l~gH~~~V~~v~~s~~~~   66 (297)
T 2pm7_B            7 AHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHPKF   66 (297)
T ss_dssp             SCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCE-------------------EECCCSSCEEEEEECCGGG
T ss_pred             CCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEE-------------------EEccccCCeEEEEecCCCc
Confidence            4899999999999999 5689999999999999754  2222                   2689999999999987  4


Q ss_pred             CCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecC--CCceEEEEEeCCCeEEEEECCCCce--eEEecC
Q 001163          430 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP--NKQLSVVTCGEDRVIKVWDAVTGTK--QYIFEG  505 (1134)
Q Consensus       430 ~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~--~~~~~l~s~s~d~~i~iwd~~~~~~--~~~~~~  505 (1134)
                      +++||+|+.|++|+|||+.+++.. ....+.+|...|.+++|+|+  +.  +|++++.|++|++||+.++..  ...+.+
T Consensus        67 g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~~~~  143 (297)
T 2pm7_B           67 GTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPIIIDA  143 (297)
T ss_dssp             CSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEEEEC
T ss_pred             CCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeeeeec
Confidence            899999999999999999987522 22357789999999999998  66  899999999999999987642  466789


Q ss_pred             CCcCEEEEeccccC-----------CccEEEEecCCCcEEEEecCCCC----ceeeecCCCCCeeEEEECcCC---CEEE
Q 001163          506 HESPVYSICPHHKE-----------NIQFIFSTATDGKIKAWLYDNLG----SRVDYDAPGHSSTMMAYSADG---ARLF  567 (1134)
Q Consensus       506 h~~~v~~~~~~~~~-----------~~~~l~s~s~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~s~~~---~~l~  567 (1134)
                      |...|.+++|++..           ++.+|++|+.|++|++||++...    ....+..|...|.+++|+|++   ++|+
T Consensus       144 h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~la  223 (297)
T 2pm7_B          144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMA  223 (297)
T ss_dssp             CSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred             ccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEE
Confidence            99999999998752           24799999999999999998765    344577888899999999985   7899


Q ss_pred             EEecCCCCCeEEEEEeCCCCe---eEEEe--cCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 001163          568 SCGTNKEGESYLVEWNESEGA---VKRTY--HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMD  628 (1134)
Q Consensus       568 ~~~~~~~~~~~i~~wd~~~~~---~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  628 (1134)
                      +++.|+    .|++||+.++.   ....+  ..+. ..+.+++|+|++++|++++.||.|++|+..
T Consensus       224 s~s~D~----~v~iWd~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          224 SVSQDR----TCIIWTQDNEQGPWKKTLLKEEKFP-DVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             EEETTS----CEEEEEESSTTSCCEEEESSSSCCS-SCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             EEECCC----cEEEEEeCCCCCccceeeeecccCC-CcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            998754    59999987643   12233  3344 389999999999999999999999999976

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2e-30  Score=288.57  Aligned_cols=282  Identities=14%  Similarity=0.251  Sum_probs=234.7

Q ss_pred             eeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeC
Q 001163          359 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS  438 (1134)
Q Consensus       359 V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~  438 (1134)
                      .++|+||+++  +||+|. |++|+|||+.+++.+....                 +.+|...|++++|+|++++||+|+.
T Consensus        28 ~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~~~-----------------~~~~~~~V~~v~~~~~~~~l~sgs~   87 (318)
T 4ggc_A           28 LNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGEYISSVAWIKEGNYLAVGTS   87 (318)
T ss_dssp             CBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTCCEEEEEECTTSSEEEEEET
T ss_pred             ceEEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCCeEEEEEECCCCCEEEEEEC
Confidence            4689999986  667764 8999999999998765311                 4678999999999999999999999


Q ss_pred             CCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC-ceeEEecCCCcCEEEEeccc
Q 001163          439 KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHESPVYSICPHH  517 (1134)
Q Consensus       439 dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~  517 (1134)
                      ||+|++||+.+++.+.   .+.+|...+.++.+  ++.  .+++++.++.+++|+..++ ..+..+.+|...+..+.+.+
T Consensus        88 Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~--~~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (318)
T 4ggc_A           88 SAEVQLWDVQQQKRLR---NMTSHSARVGSLSW--NSY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP  160 (318)
T ss_dssp             TSEEEEEETTTTEEEE---EEECCSSCEEEEEE--ETT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred             CCcEEEeecCCceeEE---EecCccceEEEeec--CCC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence            9999999999998766   67899998887665  456  7999999999999998876 45677889999999998865


Q ss_pred             cCCccEEEEecCCCcEEEEecCCCCce----eeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEe
Q 001163          518 KENIQFIFSTATDGKIKAWLYDNLGSR----VDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTY  593 (1134)
Q Consensus       518 ~~~~~~l~s~s~dg~i~vwd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~  593 (1134)
                        ++.++++++.|+.|++||+.+.+..    .....+...|..++++|++..++..... ..+..|++||..........
T Consensus       161 --~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~i~lwd~~~~~~~~~~  237 (318)
T 4ggc_A          161 --DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG-TSDRHIRIWNVCSGACLSAV  237 (318)
T ss_dssp             --TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEEC-TTTCEEEEEETTTCCEEEEE
T ss_pred             --CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEec-CCCCEEEEEecccccccccc
Confidence              4489999999999999999875533    3344566689999999987655433221 33567999999988877766


Q ss_pred             cCCCCCceEEEEEcCCCCEEEEEe--CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEc
Q 001163          594 HGLGKRSVGVVQFDTTKNRFLAAG--DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN  671 (1134)
Q Consensus       594 ~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~  671 (1134)
                      ....  .+..+.|+++++.+++++  .|+.|++||+.+++++..+.+|  ...|++++|+|+|++|++++.||+|+|||+
T Consensus       238 ~~~~--~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH--~~~V~~l~~spdg~~l~S~s~D~~v~iWd~  313 (318)
T 4ggc_A          238 DAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH--TSRVLSLTMSPDGATVASAAADETLRLWRC  313 (318)
T ss_dssp             ECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred             ccee--eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence            5443  688999999999988765  7999999999999999999865  779999999999999999999999999998


Q ss_pred             cCC
Q 001163          672 ADG  674 (1134)
Q Consensus       672 ~~~  674 (1134)
                      .+.
T Consensus       314 ~~~  316 (318)
T 4ggc_A          314 FEL  316 (318)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-30  Score=290.20  Aligned_cols=240  Identities=16%  Similarity=0.234  Sum_probs=211.4

Q ss_pred             ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEE
Q 001163          413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW  492 (1134)
Q Consensus       413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  492 (1134)
                      .+.+|.+.|++++| |++++|++|+.||.|++||+.+++...   .+..|...|.+++|+|+++  +|++++.|+.|++|
T Consensus        13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~   86 (313)
T 3odt_A           13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT---VVYTGQGFLNSVCYDSEKE--LLLFGGKDTMINGV   86 (313)
T ss_dssp             EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE---EEEECSSCEEEEEEETTTT--EEEEEETTSCEEEE
T ss_pred             HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE---EeecCCccEEEEEECCCCC--EEEEecCCCeEEEE
Confidence            37899999999999 999999999999999999998877554   5778999999999999999  89999999999999


Q ss_pred             ECCCC---ceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECc-CCCEEEE
Q 001163          493 DAVTG---TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSA-DGARLFS  568 (1134)
Q Consensus       493 d~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~  568 (1134)
                      ++...   +.+..+.+|...|.+++|  +  +.++++++.|+.|++||  .......+..+...+.++++.| +++.+++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~i~~~~~--~--~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  160 (313)
T 3odt_A           87 PLFATSGEDPLYTLIGHQGNVCSLSF--Q--DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT  160 (313)
T ss_dssp             ETTCCTTSCC-CEECCCSSCEEEEEE--E--TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred             EeeecCCCCcccchhhcccCEEEEEe--c--CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence            98754   567788999999999998  2  36899999999999999  4556667778888999999988 8999999


Q ss_pred             EecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceE
Q 001163          569 CGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCI  648 (1134)
Q Consensus       569 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v  648 (1134)
                      ++.++    .|++||  .++....+...+...+.+++|+|++. +++++.||.|++||+.+++.+..+..+  ...|.++
T Consensus       161 ~~~d~----~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~i~~~  231 (313)
T 3odt_A          161 ASADK----TIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGH--ESFVYCI  231 (313)
T ss_dssp             EETTS----CEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEE
T ss_pred             EECCC----CEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcC--CceEEEE
Confidence            98654    499999  56777788875555899999999987 999999999999999999999998855  6689999


Q ss_pred             EEcCCCcEEEEEECCCcEEEEEccCC
Q 001163          649 RFNKEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       649 ~~sp~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      +|+|++ .+++++.||.|++||+.++
T Consensus       232 ~~~~~~-~l~~~~~dg~v~iwd~~~~  256 (313)
T 3odt_A          232 KLLPNG-DIVSCGEDRTVRIWSKENG  256 (313)
T ss_dssp             EECTTS-CEEEEETTSEEEEECTTTC
T ss_pred             EEecCC-CEEEEecCCEEEEEECCCC
Confidence            999999 6889999999999999877

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.7e-33  Score=312.96  Aligned_cols=330  Identities=10%  Similarity=0.067  Sum_probs=247.2

Q ss_pred             CCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 001163          551 GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV  630 (1134)
Q Consensus       551 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  630 (1134)
                      ...|.+++|+|||+++++++.|    .+|+  |...++.+   .+|.. .+..++|+|+|       .++.+.+|+.+..
T Consensus        15 ~~~v~sv~~SpDG~~iASas~D----~TV~--d~~~~~~l---~gh~~-~v~~V~FsPdg-------~~~~~~~~~~~~~   77 (588)
T 2j04_A           15 EDWKNNLTWARDGTLYLTTFPD----ISIG--QPKYAKDI---NCNSK-NLFHVKEFPLE-------FENKLDFELAQQN   77 (588)
T ss_dssp             SSSSCCEEECTTSCEEEECSSS----EEEE--EECCCSCC---SSBGG-GTEEEEEECCC-------CCCTTTTSCCCSS
T ss_pred             hccEEEEEECCCCCEEEEEcCC----ceee--ccccccee---cCCCc-cEEEEEECCCC-------CcceEEEEeCCCc
Confidence            3578999999999999999764    4577  75555444   67776 89999999998       4565555554322


Q ss_pred             ceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhccccccccccccc
Q 001163          631 NLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANA  710 (1134)
Q Consensus       631 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  710 (1134)
                      .   .+.. .+...|.+++|+|+|.+||+++.||.+++|+...   .+..+. |...                       
T Consensus        78 ~---~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---~l~~l~-~~~~-----------------------  126 (588)
T 2j04_A           78 G---LLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---MLTNLD-SKGN-----------------------  126 (588)
T ss_dssp             C---SSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---EEEECC-CSSC-----------------------
T ss_pred             e---Eeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---eeeecc-CCCc-----------------------
Confidence            2   2221 2256899999999999999999999999999533   332222 1100                       


Q ss_pred             ccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCce
Q 001163          711 NVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLA  790 (1134)
Q Consensus       711 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~  790 (1134)
                                                                                     .....|.+++|||||++
T Consensus       127 ---------------------------------------------------------------~~~~sv~svafSPDG~~  143 (588)
T 2j04_A          127 ---------------------------------------------------------------LSSRTYHCFEWNPIESS  143 (588)
T ss_dssp             ---------------------------------------------------------------STTTCEEEEEECSSSSC
T ss_pred             ---------------------------------------------------------------cccccEEEEEEcCCCCE
Confidence                                                                           01345889999999999


Q ss_pred             eeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEE
Q 001163          791 ILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFN  870 (1134)
Q Consensus       791 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd  870 (1134)
                      |++++.||.|+||++...........            .-..+.....  +|...|.+++|+||| +++++.|++|++||
T Consensus       144 LAsgs~DGtVkIWd~~~~~l~~~~~i------------~l~ti~~~~~--gh~~~V~sVawSPdg-Laass~D~tVrlWd  208 (588)
T 2j04_A          144 IVVGNEDGELQFFSIRKNSENTPEFY------------FESSIRLSDA--GSKDWVTHIVWYEDV-LVAALSNNSVFSMT  208 (588)
T ss_dssp             EEEEETTSEEEEEECCCCTTTCCCCE------------EEEEEECSCT--TCCCCEEEEEEETTE-EEEEETTCCEEEEC
T ss_pred             EEEEcCCCEEEEEECCCCccccccce------------eeeeeecccc--cccccEEEEEEcCCc-EEEEeCCCeEEEEE
Confidence            99999999999998764211000000            0000111113  388999999999999 54444599999999


Q ss_pred             ccCCeE---EEEe-cCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEE--eeCCCEEEE
Q 001163          871 MMTFKT---MTTF-MPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAF--SNTLNVLVS  944 (1134)
Q Consensus       871 ~~~~~~---~~~~-~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~--s~d~~~l~s  944 (1134)
                      +.++..   ..++ .+|...|.+++|+   +++||+++ +++|++||+.+++......+|.+.|..++|  +||+..|++
T Consensus       209 ~~~~~~~~~~~tL~~~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~  284 (588)
T 2j04_A          209 VSASSHQPVSRMIQNASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLM  284 (588)
T ss_dssp             CCSSSSCCCEEEEECCCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEE
T ss_pred             CCCCccccceeeecccccCcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEE
Confidence            988773   3566 4788899999998   37898887 699999999988874444489999999999  999999999


Q ss_pred             EeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEE
Q 001163          945 SGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPIT 1024 (1134)
Q Consensus       945 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~ 1024 (1134)
                      ++.||+ ++|..+.                        ++|+||+..++.. |+++++|+..... +..+.  + ...|.
T Consensus       285 a~edG~-klw~~d~------------------------~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~~~--~-~~~I~  334 (588)
T 2j04_A          285 SNKTSY-KVLLEDE------------------------LHVTADNIIAPYL-EKKFKKWSTIWNE-FNNYE--T-TLVIH  334 (588)
T ss_dssp             CSSCEE-EEEESSS------------------------EEEECCCSSHHHH-HHHHHHTTTTTTS-SSSSC--C-EEEEE
T ss_pred             EcCCCC-EEEeecc------------------------EEECCCceEEEEc-CCEEEEEECCCCc-eeeec--c-ceEEE
Confidence            999999 9999762                        5699999887775 9999999986544 33332  3 77899


Q ss_pred             EEEEccCCCEEEEEec
Q 001163         1025 HATYSCDSQSIYVAFE 1040 (1134)
Q Consensus      1025 ~~~~s~dg~~l~s~s~ 1040 (1134)
                      +++|||||+.+|+++.
T Consensus       335 ~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          335 GISLSPDGYSIAIVYD  350 (588)
T ss_dssp             EEEECTTSSEEEEEEE
T ss_pred             EEEECCCCCEEEEEEe
Confidence            9999999999998873

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=4.1e-31  Score=305.60  Aligned_cols=366  Identities=13%  Similarity=0.162  Sum_probs=253.6

Q ss_pred             CCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec-------------CCC
Q 001163          485 EDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-------------APG  551 (1134)
Q Consensus       485 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-------------~~~  551 (1134)
                      .++.+++|++..++....+.+|.+.|.+++|++. ++.+|++++.||.|++||+........+.             .+.
T Consensus        21 ~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (408)
T 4a11_B           21 AESTRRVLGLELNKDRDVERIHGGGINTLDIEPV-EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR   99 (408)
T ss_dssp             HHHHHHHHTEEECTTEEECCCCSSCEEEEEECTT-TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred             ccCcceeeccccCcceeeeeccCCcEEEEEEecC-CCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence            3456788998888888999999999999999751 45899999999999999998876655443             477


Q ss_pred             CCeeEEEECc-CCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCC---CEEEEEeCCCeEEEEEc
Q 001163          552 HSSTMMAYSA-DGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK---NRFLAAGDEFMIKFWDM  627 (1134)
Q Consensus       552 ~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~  627 (1134)
                      ..|.+++|+| +++++++++.+    +.|++||+.+++....+...  ..+..+.+++.+   .++++++.||.|++||+
T Consensus       100 ~~v~~~~~~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  173 (408)
T 4a11_B          100 YSVETVQWYPHDTGMFTSSSFD----KTLKVWDTNTLQTADVFNFE--ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL  173 (408)
T ss_dssp             SCEEEEEECTTCTTCEEEEETT----SEEEEEETTTTEEEEEEECS--SCEEEEEECSSCSSCCEEEEEESSSSEEEEES
T ss_pred             CcEEEEEEccCCCcEEEEEeCC----CeEEEeeCCCCccceeccCC--CceeeeEeecCCCCCcEEEEEcCCCeEEEEeC
Confidence            7999999999 77889988764    46999999999988888743  278889998854   49999999999999999


Q ss_pred             CCCceeEEEecCCCCCCcceEEEcCCCc-EEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhccccccccc
Q 001163          628 DNVNLLASIDADGGLQASPCIRFNKEGI-LLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFG  706 (1134)
Q Consensus       628 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  706 (1134)
                      .+++.+..+..+  ...|.+++|+|++. ++++++.||.|++||+.++......+..+.....                 
T Consensus       174 ~~~~~~~~~~~~--~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----------------  234 (408)
T 4a11_B          174 KSGSCSHILQGH--RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS-----------------  234 (408)
T ss_dssp             SSSCCCEEECCC--CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSC-----------------
T ss_pred             CCcceeeeecCC--CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccc-----------------
Confidence            999999888755  66899999999998 6899999999999999877544444432211100                 


Q ss_pred             ccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEec
Q 001163          707 SANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTN  786 (1134)
Q Consensus       707 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp  786 (1134)
                                                                                 .........|...|.+++|+|
T Consensus       235 -----------------------------------------------------------~~~~~~~~~~~~~v~~~~~~~  255 (408)
T 4a11_B          235 -----------------------------------------------------------QAVESANTAHNGKVNGLCFTS  255 (408)
T ss_dssp             -----------------------------------------------------------CCTTTSSCSCSSCEEEEEECT
T ss_pred             -----------------------------------------------------------eeeccccccccCceeEEEEcC
Confidence                                                                       000111124788999999999


Q ss_pred             CCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeE
Q 001163          787 SGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKI  866 (1134)
Q Consensus       787 dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i  866 (1134)
                      +++++++++.||.+++|++........              ..+....    . ..............+.+++++.++.|
T Consensus       256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~--------------~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~i  316 (408)
T 4a11_B          256 DGLHLLTVGTDNRMRLWNSSNGENTLV--------------NYGKVCN----N-SKKGLKFTVSCGCSSEFVFVPYGSTI  316 (408)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCBCCC--------------CCCCCCC----C-CSSCCCCEECCSSSSCEEEEEETTEE
T ss_pred             CCCEEEEecCCCeEEEEECCCCcccee--------------ccccccc----c-ccccceeEEecCCCceEEEEecCCEE
Confidence            999999999999999998874321000              0000000    0 01122223333444555656569999


Q ss_pred             EEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEee-CCCEEEEE
Q 001163          867 SLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSN-TLNVLVSS  945 (1134)
Q Consensus       867 ~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~-d~~~l~s~  945 (1134)
                      ++||+.+++.+..+.+|...|++++|+| ++++|++|+.||.|++||+.+++.+.....+...   ..+.+ ....+.++
T Consensus       317 ~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  392 (408)
T 4a11_B          317 AVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPAFEDAWSSS  392 (408)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC------------------------------
T ss_pred             EEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccccccceeeccc
Confidence            9999999999999999999999999999 8999999999999999999998877655443322   22332 34455677


Q ss_pred             eCCCcEEEEECCC
Q 001163          946 GADSQLCVWSTDG  958 (1134)
Q Consensus       946 s~Dg~i~iwd~~~  958 (1134)
                      +.|+.+++|+...
T Consensus       393 ~~~~~~~~W~~~~  405 (408)
T 4a11_B          393 DEEGGTSAWSHPQ  405 (408)
T ss_dssp             -------------
T ss_pred             CccCceeecCCcc
Confidence            8899999998654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.1e-31  Score=310.86  Aligned_cols=300  Identities=13%  Similarity=0.184  Sum_probs=231.3

Q ss_pred             eecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCC------------CC
Q 001163          353 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT------------AS  420 (1134)
Q Consensus       353 ~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~  420 (1134)
                      +.+.+.|++++|+|+|+ +||+|+.||.|+|||+.+++.......        ........+.+|.            ..
T Consensus        25 ~~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~--------~~~~~~~~~~~h~~~~~~~~~~~~~~~   95 (447)
T 3dw8_B           25 VAEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSR--------GEYNVYSTFQSHEPEFDYLKSLEIEEK   95 (447)
T ss_dssp             CCGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCC--------CCEEEEEEEECCCCEEEGGGTEEECCC
T ss_pred             ccccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCcccc--------cceeEecccccccccccccccccccCc
Confidence            45678999999999999 568999999999999988763110000        0000011256787            88


Q ss_pred             EEEEEEcCCC--CEEEEEeCCCEEEEEEccCCceee------------------------------------eeee-eec
Q 001163          421 VNRVMWSPDG--TLFGVAYSKHIVHLYTYHGGDELR------------------------------------NHLE-IEA  461 (1134)
Q Consensus       421 V~~l~~spd~--~~las~s~dg~v~iwd~~~~~~~~------------------------------------~~~~-l~~  461 (1134)
                      |++++|+|++  .+|++++.|+.|++||+.++....                                    .... +.+
T Consensus        96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (447)
T 3dw8_B           96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA  175 (447)
T ss_dssp             CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred             eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence            9999999998  899999999999999998754310                                    0011 368


Q ss_pred             CCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCC-CceeE-------EecCCCcCEEEEeccccCCccEEEEecCCCcE
Q 001163          462 HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT-GTKQY-------IFEGHESPVYSICPHHKENIQFIFSTATDGKI  533 (1134)
Q Consensus       462 h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~-------~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i  533 (1134)
                      |...|.+++|+|+++  +|++| .|+.|++||+.+ ++.+.       .+.+|...|.+++|+++.. .+|++++.||.|
T Consensus       176 h~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~s~~~dg~i  251 (447)
T 3dw8_B          176 HTYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC-NTFVYSSSKGTI  251 (447)
T ss_dssp             CSSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT-TEEEEEETTSCE
T ss_pred             CCcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC-cEEEEEeCCCeE
Confidence            999999999999999  78888 799999999984 44444       3668999999999965431 799999999999


Q ss_pred             EEEecCCCCc----eeeecCCCC------------CeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCC-CeeEEEecCC
Q 001163          534 KAWLYDNLGS----RVDYDAPGH------------SSTMMAYSADGARLFSCGTNKEGESYLVEWNESE-GAVKRTYHGL  596 (1134)
Q Consensus       534 ~vwd~~~~~~----~~~~~~~~~------------~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~  596 (1134)
                      ++||++....    ...+..+..            .|.+++|+|++++|++++.     +.|++||+.+ ++.+..+.+|
T Consensus       252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-----~~v~iwd~~~~~~~~~~~~~~  326 (447)
T 3dw8_B          252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-----LSVKVWDLNMENRPVETYQVH  326 (447)
T ss_dssp             EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-----SEEEEEETTCCSSCSCCEESC
T ss_pred             EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-----CeEEEEeCCCCccccceeecc
Confidence            9999998775    566666665            8999999999999999864     4699999997 8888888877


Q ss_pred             CCC-----------c---eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEec------------------------
Q 001163          597 GKR-----------S---VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA------------------------  638 (1134)
Q Consensus       597 ~~~-----------~---v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------------------------  638 (1134)
                      ...           .   +..++|+|++++|++++.||.|++||+.+++.+.....                        
T Consensus       327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (447)
T 3dw8_B          327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKD  406 (447)
T ss_dssp             GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred             ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccc
Confidence            420           0   22489999999999999999999999999887642211                        


Q ss_pred             ------CCCCCCcceEEEcCCCcEEEEEECCCcEEEEEc
Q 001163          639 ------DGGLQASPCIRFNKEGILLAVSTNDNGIKILAN  671 (1134)
Q Consensus       639 ------~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~  671 (1134)
                            ......|..++|+|++.+||+++.++ +++|..
T Consensus       407 ~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          407 EISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD  444 (447)
T ss_dssp             CEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred             cccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence                  02234678899999999999998775 777764

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.2e-30  Score=302.15  Aligned_cols=291  Identities=17%  Similarity=0.256  Sum_probs=237.9

Q ss_pred             cCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEE
Q 001163          770 LPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCF  849 (1134)
Q Consensus       770 ~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v  849 (1134)
                      .|........+.|+||+++ .|+ ++.|++|+|||..                      +|++... +...+|...|+++
T Consensus        99 ap~~~~d~y~~~l~wS~~n-~lA-vgld~tV~lWd~~----------------------tg~~~~~-~~~~~~~~~V~sv  153 (420)
T 4gga_A           99 APEIRNDYYLNLVDWSSGN-VLA-VALDNSVYLWSAS----------------------SGDILQL-LQMEQPGEYISSV  153 (420)
T ss_dssp             CTTCCCCTTCBCEEECTTS-EEE-EEETTEEEEEETT----------------------TCCEEEE-EECCSTTCCEEEE
T ss_pred             CCCCcccccceeEEECCCC-EEE-EEeCCEEEEEECC----------------------CCCEEEE-EEecCCCCcEEEE
Confidence            3333344567789999765 444 4569999999654                      4433221 1122388899999


Q ss_pred             EEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccc-eEEEeccCcc
Q 001163          850 ALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD-EVKTKLKGHQ  927 (1134)
Q Consensus       850 ~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~-~~~~~l~~h~  927 (1134)
                      +|+|||++|++|+ ||+|+|||+.+++++..+.+|...+.+++++   +.+|++|+.|+.+++||.... ..+..+.+|.
T Consensus       154 ~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~  230 (420)
T 4gga_A          154 AWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHS  230 (420)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCS
T ss_pred             EECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccceeeEEecccc
Confidence            9999999999999 9999999999999999999999999998885   469999999999999998864 5567889999


Q ss_pred             CceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEE-EEE---eeceEEEE
Q 001163          928 KRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHL-LAV---HETQIAIY 1003 (1134)
Q Consensus       928 ~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l-~~~---~d~~i~iw 1003 (1134)
                      ..+..+.|+|++.++++++.|+.+++|+...++..... +.....+.   ..|.+++|+|++..+ +++   .|++|++|
T Consensus       231 ~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~-~~~~~~~~---~~V~~~~~~p~~~~~la~~~gs~D~~I~iw  306 (420)
T 4gga_A          231 QEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP-LQTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIW  306 (420)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCC-SEEECCCS---SCEEEEEECTTCTTEEEEEECTTTCEEEEE
T ss_pred             cceeeeeecCCCCeeeeeeccccceEEeecccccccee-eeeecccC---CceeeeeeCCCcccEEEEEeecCCCEEEEE
Confidence            99999999999999999999999999999886643322 22233333   469999999976544 442   58999999


Q ss_pred             eCCCcccceeeccCCCccCEEEEEEccCCCEEEEEe--cCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecC
Q 001163         1004 EAPKLECLKQFVPREASGPITHATYSCDSQSIYVAF--EEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNP 1081 (1134)
Q Consensus      1004 d~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s--~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p 1081 (1134)
                      |+.++++...+.   +...+.++.|+++++.|++++  .|+.|+|||+.+++.+..+.       ||.+.|+.+  +|+|
T Consensus       307 d~~t~~~~~~~~---~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~-------gH~~~V~~l--~~sp  374 (420)
T 4gga_A          307 NVCSGACLSAVD---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-------GHTSRVLSL--TMSP  374 (420)
T ss_dssp             ETTTTEEEEEEE---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-------CCSSCEEEE--EECT
T ss_pred             eCCccccceeec---cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc-------CCCCCEEEE--EEcC
Confidence            999999988876   356899999999999988765  78999999999999887765       789999888  7889


Q ss_pred             CCCCEEEEEecCCcEEEEeCCCCC
Q 001163         1082 TDPNQFALGLTDGGVYIIEPLEAE 1105 (1134)
Q Consensus      1082 ~~~~~l~s~~~Dg~v~vW~~~~~~ 1105 (1134)
                       |+++|++|+.||+|+|||+.+.+
T Consensus       375 -dg~~l~S~s~D~tvriWdv~~~~  397 (420)
T 4gga_A          375 -DGATVASAAADETLRLWRCFELD  397 (420)
T ss_dssp             -TSSCEEEEETTTEEEEECCSCSS
T ss_pred             -CCCEEEEEecCCeEEEEECCCCC
Confidence             79999999999999999997654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.7e-31  Score=295.89  Aligned_cols=251  Identities=18%  Similarity=0.291  Sum_probs=206.2

Q ss_pred             ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecC--CCceEEEEEeCCCeEE
Q 001163          413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP--NKQLSVVTCGEDRVIK  490 (1134)
Q Consensus       413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~--~~~~~l~s~s~d~~i~  490 (1134)
                      ++.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++.. ....+.+|.+.|.+++|+++  ++  +|+||+.|++|+
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~   84 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI   84 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence            36789999999999999999999999999999999987532 23368899999999999863  66  799999999999


Q ss_pred             EEECCCC--ceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCc---eeeecCCCCCeeEEEECcC---
Q 001163          491 VWDAVTG--TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS---RVDYDAPGHSSTMMAYSAD---  562 (1134)
Q Consensus       491 iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~s~~---  562 (1134)
                      +||+.++  +.+..+.+|...|.+++|+++.++.+|++++.|++|++||+.....   ...+..|...+.+++|+|+   
T Consensus        85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  164 (316)
T 3bg1_A           85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP  164 (316)
T ss_dssp             EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred             EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence            9999987  4667888999999999998876678999999999999999986532   2334566778999999997   


Q ss_pred             --------------CCEEEEEecCCCCCeEEEEEeCCCC---eeEEEecCCCCCceEEEEEcCCC----CEEEEEeCCCe
Q 001163          563 --------------GARLFSCGTNKEGESYLVEWNESEG---AVKRTYHGLGKRSVGVVQFDTTK----NRFLAAGDEFM  621 (1134)
Q Consensus       563 --------------~~~l~~~~~~~~~~~~i~~wd~~~~---~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~  621 (1134)
                                    +++|++++.|+    .|++||+..+   +.+..+.+|.. .|.+++|+|++    .+|++++.||+
T Consensus       165 ~~~~~~~~~~~~~~~~~l~sgs~D~----~v~lWd~~~~~~~~~~~~l~~h~~-~V~~v~~sp~~~~~~~~las~s~D~~  239 (316)
T 3bg1_A          165 GSLIDHPSGQKPNYIKRFASGGCDN----LIKLWKEEEDGQWKEEQKLEAHSD-WVRDVAWAPSIGLPTSTIASCSQDGR  239 (316)
T ss_dssp             ------CCSCCCCCCCBEECCBTTS----BCCEEEECTTSCEEEEECCBCCSS-CEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred             ccccccccccCccccceEEEecCCC----eEEEEEeCCCCccceeeecccCCC-ceEEEEecCCCCCCCceEEEEcCCCe
Confidence                          46888887644    5999999755   46677888876 89999999986    88999999999


Q ss_pred             EEEEEcCCCc----eeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccC
Q 001163          622 IKFWDMDNVN----LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD  673 (1134)
Q Consensus       622 i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~  673 (1134)
                      |++|++.+..    ....+..+  ...|.+++|+|++++|++++.||.|++|+...
T Consensus       240 v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          240 VFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             EEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred             EEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence            9999987631    12233333  56899999999999999999999999999763

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.98  E-value=1.7e-31  Score=295.97  Aligned_cols=257  Identities=13%  Similarity=0.143  Sum_probs=205.6

Q ss_pred             CCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCe--EEEEecCCCCCeEEEEEcCC-CCcEEEEEeCCCcEEEEEccc
Q 001163          841 NPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK--TMTTFMPPPPAATFLAFHPQ-DNNIIAIGMEDSSIQIYNVRV  916 (1134)
Q Consensus       841 ~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~--~~~~~~~~~~~v~~l~~sp~-~~~~la~g~~dg~i~iwd~~~  916 (1134)
                      +|...|.+++|+|+|++|++++ |++|+|||+.+++  .+..+.+|...|.+++|+++ ++++|++|+.|++|++||+.+
T Consensus        11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~   90 (316)
T 3bg1_A           11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN   90 (316)
T ss_dssp             ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS
T ss_pred             cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC
Confidence            3999999999999999999999 9999999998764  56788999999999999862 478999999999999999998


Q ss_pred             c--eEEEeccCccCceEEEEEeeC--CCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCC----
Q 001163          917 D--EVKTKLKGHQKRITGLAFSNT--LNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLD----  988 (1134)
Q Consensus       917 ~--~~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d----  988 (1134)
                      +  +.+..+.+|...|.+++|+|+  +.+|++++.|++|++||+..+..  ........+|.   ..+.+++|+|+    
T Consensus        91 ~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~--~~~~~~~~~h~---~~v~~~~~~~~~~~~  165 (316)
T 3bg1_A           91 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ--WEVKKINNAHT---IGCNAVSWAPAVVPG  165 (316)
T ss_dssp             SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC--EEECCBTTSSS---SCBCCCEECCCCCC-
T ss_pred             CcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC--cceeeeecccc---CCcceEEEccccCCc
Confidence            7  456778899999999999998  88999999999999999987431  11233444554   46889999998    


Q ss_pred             -------------CCEEEE-EeeceEEEEeCCCc---ccceeeccCCCccCEEEEEEccCC----CEEEEEecCCcEEEe
Q 001163          989 -------------QTHLLA-VHETQIAIYEAPKL---ECLKQFVPREASGPITHATYSCDS----QSIYVAFEEGSVGVL 1047 (1134)
Q Consensus       989 -------------g~~l~~-~~d~~i~iwd~~~~---~~~~~~~~~~h~~~v~~~~~s~dg----~~l~s~s~Dg~i~vw 1047 (1134)
                                   +++|++ +.|++|++||+...   +.+..+.  +|...|.+++|+|++    .+|++++.|++|++|
T Consensus       166 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~--~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw  243 (316)
T 3bg1_A          166 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE--AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW  243 (316)
T ss_dssp             -----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB--CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEE
T ss_pred             cccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc--cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEE
Confidence                         467787 58999999999755   2344444  899999999999997    889999999999999


Q ss_pred             ecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCCCCCCccCC
Q 001163         1048 TASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGRWGTS 1111 (1134)
Q Consensus      1048 d~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~~~~~~~ 1111 (1134)
                      ++.+........   ....+|...|+.+  +|+| ++++|++++.||+|++|+... +++|...
T Consensus       244 ~~~~~~~~~~~~---~~~~~~~~~v~~v--~~sp-~g~~las~~~D~~v~lw~~~~-~g~~~~~  300 (316)
T 3bg1_A          244 TCDDASSNTWSP---KLLHKFNDVVWHV--SWSI-TANILAVSGGDNKVTLWKESV-DGQWVCI  300 (316)
T ss_dssp             ECSSTTCCCCBC---CEEEECSSCEEEE--EECT-TTCCEEEEESSSCEEEEEECT-TSCEEEE
T ss_pred             EccCccccchhh---hhhhcCCCcEEEE--EEcC-CCCEEEEEcCCCeEEEEEECC-CCcEEEe
Confidence            997732100000   0112466777776  8899 689999999999999999863 3567643

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.98  E-value=2.9e-30  Score=300.73  Aligned_cols=272  Identities=21%  Similarity=0.341  Sum_probs=236.6

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la  434 (1134)
                      |...|++++|  +++ ++++|+.||.|++||+.+++.+..                   +.+|.+.|.+++|  ++++|+
T Consensus       132 ~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~~-------------------~~~h~~~v~~l~~--~~~~l~  187 (435)
T 1p22_A          132 TSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DERVII  187 (435)
T ss_dssp             SCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSSEEE
T ss_pred             CCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEEE-------------------EcCCCCcEEEEEE--CCCEEE
Confidence            5678888887  677 568999999999999999876653                   6789999999999  889999


Q ss_pred             EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCcee---EEecCCCcCEE
Q 001163          435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ---YIFEGHESPVY  511 (1134)
Q Consensus       435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~---~~~~~h~~~v~  511 (1134)
                      +|+.||.|++||+.+++.+.   .+.+|...|.+++|+  +.  .+++|+.|+.|++||+.+++.+   ..+.+|...|.
T Consensus       188 sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~--~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~  260 (435)
T 1p22_A          188 TGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFN--NG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN  260 (435)
T ss_dssp             EEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECC--TT--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEE
T ss_pred             EEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEc--CC--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEE
Confidence            99999999999999998665   678999999999997  34  7999999999999999988766   67889999999


Q ss_pred             EEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEE
Q 001163          512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKR  591 (1134)
Q Consensus       512 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~  591 (1134)
                      ++++    ++.++++++.||.|++||+.+......+..+...+.++.+  +++++++++.++    .|++||+.+++.+.
T Consensus       261 ~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg----~i~iwd~~~~~~~~  330 (435)
T 1p22_A          261 VVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDN----TIRLWDIECGACLR  330 (435)
T ss_dssp             EEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTS----CEEEEETTTCCEEE
T ss_pred             EEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCC----eEEEEECCCCCEEE
Confidence            9988    3479999999999999999999888888888889999988  578999998654    49999999999999


Q ss_pred             EecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc---------eeEEEecCCCCCCcceEEEcCCCcEEEEEEC
Q 001163          592 TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN---------LLASIDADGGLQASPCIRFNKEGILLAVSTN  662 (1134)
Q Consensus       592 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~  662 (1134)
                      .+.+|.. .+.+++|  ++.++++|+.||.|++||+.++.         .+..+..|  ...|.+++|  ++.+|++++.
T Consensus       331 ~~~~h~~-~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~--~~~~l~s~s~  403 (435)
T 1p22_A          331 VLEGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH--SGRVFRLQF--DEFQIVSSSH  403 (435)
T ss_dssp             EECCCSS-CEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC--SSCCCCEEE--CSSCEEECCS
T ss_pred             EEeCCcC-cEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC--CCCeEEEEe--CCCEEEEEeC
Confidence            9999876 8988888  78899999999999999997766         67777654  678999999  6889999999


Q ss_pred             CCcEEEEEccCC
Q 001163          663 DNGIKILANADG  674 (1134)
Q Consensus       663 dg~i~iw~~~~~  674 (1134)
                      ||.|++||+.+.
T Consensus       404 Dg~i~iwd~~~~  415 (435)
T 1p22_A          404 DDTILIWDFLND  415 (435)
T ss_dssp             SSEEEEEC----
T ss_pred             CCEEEEEECCCC
Confidence            999999999876

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.98  E-value=1.5e-30  Score=299.80  Aligned_cols=296  Identities=15%  Similarity=0.203  Sum_probs=241.6

Q ss_pred             CeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC-CCCEEEEE
Q 001163          358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTLFGVA  436 (1134)
Q Consensus       358 ~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~las~  436 (1134)
                      ....++++|+...++++|+.||.|+|||+........               ....+.+|.+.|++++|+| ++++||+|
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s~  100 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIASG  100 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEEE
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEEE
Confidence            3446899999887777899999999999965432210               1113678999999999999 99999999


Q ss_pred             eCCCEEEEEEccCCcee----eeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEe--cCCCcCE
Q 001163          437 YSKHIVHLYTYHGGDEL----RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF--EGHESPV  510 (1134)
Q Consensus       437 s~dg~v~iwd~~~~~~~----~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~--~~h~~~v  510 (1134)
                      +.||.|+|||+.++...    .....+.+|...|.+++|+|++.. +|++++.|+.|++||+.+++.+..+  .+|...|
T Consensus       101 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v  179 (402)
T 2aq5_A          101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTI  179 (402)
T ss_dssp             ETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSCE
T ss_pred             eCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCce
Confidence            99999999999987421    223368899999999999999844 7999999999999999999999999  8899999


Q ss_pred             EEEeccccCCccEEEEecCCCcEEEEecCCCCceeee-cCCCCC-eeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCe
Q 001163          511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY-DAPGHS-STMMAYSADGARLFSCGTNKEGESYLVEWNESEGA  588 (1134)
Q Consensus       511 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~  588 (1134)
                      .+++|++  ++.+|++++.|+.|++||+++......+ ..+... +..+.|+|++++++++.. +..++.|++||+.+++
T Consensus       180 ~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~~~d~~i~iwd~~~~~  256 (402)
T 2aq5_A          180 YSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS-RMSERQVALWDTKHLE  256 (402)
T ss_dssp             EEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC-TTCCEEEEEEETTBCS
T ss_pred             EEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc-CCCCceEEEEcCcccc
Confidence            9999976  5589999999999999999988777776 556554 899999999998888731 2236679999999875


Q ss_pred             e-EEEecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCce-eEEEecCCCCCCcceEEEcCCCcEEEEEECCCc
Q 001163          589 V-KRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNL-LASIDADGGLQASPCIRFNKEGILLAVSTNDNG  665 (1134)
Q Consensus       589 ~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~  665 (1134)
                      . ...........+..++|+|+++++++++ .||.|++||+.+++. +..+..+.+...+.+++|+|++.++++  .++.
T Consensus       257 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~  334 (402)
T 2aq5_A          257 EPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEI  334 (402)
T ss_dssp             SCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEE
T ss_pred             CCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--ccee
Confidence            4 3344333334789999999999997655 799999999999885 666665555678999999999988875  5679


Q ss_pred             EEEEEccCC
Q 001163          666 IKILANADG  674 (1134)
Q Consensus       666 i~iw~~~~~  674 (1134)
                      +++|++.++
T Consensus       335 ~~~~~l~~~  343 (402)
T 2aq5_A          335 ARFYKLHER  343 (402)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEEcCCC
Confidence            999999886

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.98  E-value=5.2e-30  Score=294.98  Aligned_cols=284  Identities=16%  Similarity=0.185  Sum_probs=237.4

Q ss_pred             cCCCC--EEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163          416 DYTAS--VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD  493 (1134)
Q Consensus       416 ~h~~~--V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd  493 (1134)
                      +|...  +.+++|+  +..+++++.|+.|++||+.+++.....  ...|...|.+++|+|+++  +|++|+.||.|++||
T Consensus        89 ~~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iwd  162 (401)
T 4aez_A           89 GIIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVSALA--ETDESTYVASVKWSHDGS--FLSVGLGNGLVDIYD  162 (401)
T ss_dssp             TCCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEEEEE--ECCTTCCEEEEEECTTSS--EEEEEETTSCEEEEE
T ss_pred             CCcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEeEee--ecCCCCCEEEEEECCCCC--EEEEECCCCeEEEEE
Confidence            45554  4456665  466888999999999999998865422  223899999999999999  899999999999999


Q ss_pred             CCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCC-CCceeeecCCCCCeeEEEECcCCCEEEEEecC
Q 001163          494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN-LGSRVDYDAPGHSSTMMAYSADGARLFSCGTN  572 (1134)
Q Consensus       494 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~  572 (1134)
                      +.+++.+..+.+|...|.+++|+  +  .++++++.||.|++||++. ......+..+...|.+++|+|+++++++++.+
T Consensus       163 ~~~~~~~~~~~~~~~~v~~~~~~--~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  238 (401)
T 4aez_A          163 VESQTKLRTMAGHQARVGCLSWN--R--HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGND  238 (401)
T ss_dssp             TTTCCEEEEECCCSSCEEEEEEE--T--TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CcCCeEEEEecCCCCceEEEEEC--C--CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCC
Confidence            99999999999999999999983  3  6899999999999999984 45566677888899999999999999999875


Q ss_pred             CCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCC-EEEEEe--CCCeEEEEEcCCCceeEEEecCCCCCCcceEE
Q 001163          573 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN-RFLAAG--DEFMIKFWDMDNVNLLASIDADGGLQASPCIR  649 (1134)
Q Consensus       573 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  649 (1134)
                      +    .|++||+.+++.+..+..|.. .+.+++|+|++. .+++++  .|+.|++||+.+++.+..+..   ...+.+++
T Consensus       239 ~----~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~---~~~v~~~~  310 (401)
T 4aez_A          239 N----VVQIWDARSSIPKFTKTNHNA-AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA---GSQVTSLI  310 (401)
T ss_dssp             S----CEEEEETTCSSEEEEECCCSS-CCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC---SSCEEEEE
T ss_pred             C----eEEEccCCCCCccEEecCCcc-eEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC---CCcEEEEE
Confidence            4    499999999999999988876 899999999775 555554  799999999999999988864   35799999


Q ss_pred             EcCCCcEEEEEE--CCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCccccccc
Q 001163          650 FNKEGILLAVST--NDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMV  727 (1134)
Q Consensus       650 ~sp~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  727 (1134)
                      |+|+++++++++  .||.|++|++.++. .....                                              
T Consensus       311 ~s~~~~~l~~~~g~~dg~i~v~~~~~~~-~~~~~----------------------------------------------  343 (401)
T 4aez_A          311 WSPHSKEIMSTHGFPDNNLSIWSYSSSG-LTKQV----------------------------------------------  343 (401)
T ss_dssp             ECSSSSEEEEEECTTTCEEEEEEEETTE-EEEEE----------------------------------------------
T ss_pred             ECCCCCeEEEEeecCCCcEEEEecCCcc-ceeEE----------------------------------------------
Confidence            999999999954  89999999987751 11111                                              


Q ss_pred             CCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCC
Q 001163          728 GMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPR  807 (1134)
Q Consensus       728 ~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~  807 (1134)
                                                 .+                .+|...|.+++|+|+|++|++++.||.+++|++..
T Consensus       344 ---------------------------~~----------------~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~  380 (401)
T 4aez_A          344 ---------------------------DI----------------PAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD  380 (401)
T ss_dssp             ---------------------------EE----------------ECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred             ---------------------------Ee----------------cCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence                                       01                12677899999999999999999999999998764

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.98  E-value=7.2e-30  Score=284.00  Aligned_cols=283  Identities=18%  Similarity=0.278  Sum_probs=232.1

Q ss_pred             cEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCe
Q 001163          778 RVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSY  857 (1134)
Q Consensus       778 ~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~  857 (1134)
                      ..+.|+||+++ .| +++.|++|+|||+.                      +|+++.. +...+|...|.+++|+|++++
T Consensus        27 y~~~l~WS~~~-~l-Avg~D~tV~iWd~~----------------------tg~~~~~-~~~~~~~~~V~~v~~~~~~~~   81 (318)
T 4ggc_A           27 YLNLVDWSSGN-VL-AVALDNSVYLWSAS----------------------SGDILQL-LQMEQPGEYISSVAWIKEGNY   81 (318)
T ss_dssp             TCBCEEECTTS-EE-EEEETTEEEEEETT----------------------TCCEEEE-EECCSTTCCEEEEEECTTSSE
T ss_pred             cceEEEECCCC-EE-EEEeCCEEEEEECC----------------------CCCEEEE-EEecCCCCeEEEEEECCCCCE
Confidence            45678999987 44 44569999999654                      4443322 122248889999999999999


Q ss_pred             EEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccc-eEEEeccCccCceEEEEE
Q 001163          858 VMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD-EVKTKLKGHQKRITGLAF  935 (1134)
Q Consensus       858 la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~-~~~~~l~~h~~~V~~l~~  935 (1134)
                      |++|+ |++|++||+.+++++..+.+|...+.++.+.   +.++++|+.++.+++|+..++ ..+..+.+|...+..+++
T Consensus        82 l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (318)
T 4ggc_A           82 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW  158 (318)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred             EEEEECCCcEEEeecCCceeEEEecCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEE
Confidence            99999 9999999999999999999999988887764   469999999999999999875 556788999999999999


Q ss_pred             eeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE---E-eeceEEEEeCCCcccc
Q 001163          936 SNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA---V-HETQIAIYEAPKLECL 1011 (1134)
Q Consensus       936 s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~---~-~d~~i~iwd~~~~~~~ 1011 (1134)
                      ++++++|++++.|++|++||+.+++........... +.   ..+.+++++|++..++.   + .++.|++||.......
T Consensus       159 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~---~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~  234 (318)
T 4ggc_A          159 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ-HQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL  234 (318)
T ss_dssp             CTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECC-CC---SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE
T ss_pred             cCCCCEEEEEecCcceeEEECCCCcccccceeeecc-cC---CceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc
Confidence            999999999999999999999987644332222222 22   46899999998765543   2 5689999999988776


Q ss_pred             eeeccCCCccCEEEEEEccCCCEEEEEe--cCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEE
Q 001163         1012 KQFVPREASGPITHATYSCDSQSIYVAF--EEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFAL 1089 (1134)
Q Consensus      1012 ~~~~~~~h~~~v~~~~~s~dg~~l~s~s--~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s 1089 (1134)
                      ....   |...+..++|++++..+++++  .|+.|++||+.+++.+..+.       +|.+.|+.+  +|+| |+++|++
T Consensus       235 ~~~~---~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~-------gH~~~V~~l--~~sp-dg~~l~S  301 (318)
T 4ggc_A          235 SAVD---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-------GHTSRVLSL--TMSP-DGATVAS  301 (318)
T ss_dssp             EEEE---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-------CCSSCEEEE--EECT-TSSCEEE
T ss_pred             cccc---ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc-------CCCCCEEEE--EEcC-CCCEEEE
Confidence            6553   577899999999999987765  79999999999999987766       788999988  7889 7899999


Q ss_pred             EecCCcEEEEeCCCCC
Q 001163         1090 GLTDGGVYIIEPLEAE 1105 (1134)
Q Consensus      1090 ~~~Dg~v~vW~~~~~~ 1105 (1134)
                      |+.||+|+|||+.+.+
T Consensus       302 ~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          302 AAADETLRLWRCFELD  317 (318)
T ss_dssp             EETTTEEEEECCSCCC
T ss_pred             EecCCeEEEEECCCCC
Confidence            9999999999997654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=2.5e-30  Score=291.15  Aligned_cols=281  Identities=8%  Similarity=0.077  Sum_probs=236.7

Q ss_pred             ecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCC-E
Q 001163          354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT-L  432 (1134)
Q Consensus       354 ~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~-~  432 (1134)
                      .|.+.|++++|+|+++ ++++|+.||.|+|||+.+++.....                ..+.+|...|.+++|+|+++ +
T Consensus         9 ~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~~----------------~~~~~~~~~v~~~~~~~~~~~~   71 (342)
T 1yfq_A            9 APKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDL----------------LQSLRYKHPLLCCNFIDNTDLQ   71 (342)
T ss_dssp             CCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEE----------------EEEEECSSCEEEEEEEESSSEE
T ss_pred             CCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCccccc----------------eeeeecCCceEEEEECCCCCcE
Confidence            3889999999999998 5689999999999999887621100                01357999999999999999 9


Q ss_pred             EEEEeCCCEEEEEEc-cCCceeeeeeeeec--CCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCC---------Ccee
Q 001163          433 FGVAYSKHIVHLYTY-HGGDELRNHLEIEA--HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT---------GTKQ  500 (1134)
Q Consensus       433 las~s~dg~v~iwd~-~~~~~~~~~~~l~~--h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~---------~~~~  500 (1134)
                      |++|+.||.|++||+ .+++.    ..+.+  |...|.+++|+| +.  ++++++.|+.|++||+.+         ++++
T Consensus        72 l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  144 (342)
T 1yfq_A           72 IYVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNS  144 (342)
T ss_dssp             EEEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred             EEEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCee
Confidence            999999999999999 88754    25778  999999999999 77  799999999999999988         7777


Q ss_pred             EEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCC-CCc--eeeecCCCCCeeEEEECc-CCCEEEEEecCCCCC
Q 001163          501 YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN-LGS--RVDYDAPGHSSTMMAYSA-DGARLFSCGTNKEGE  576 (1134)
Q Consensus       501 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-~~~--~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~  576 (1134)
                      ..+. |...|.+++|++  +  .+++++.|+.|++||++. ...  ......+...+.+++|+| +++++++++.+    
T Consensus       145 ~~~~-~~~~v~~~~~~~--~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d----  215 (342)
T 1yfq_A          145 NNTK-VKNKIFTMDTNS--S--RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSID----  215 (342)
T ss_dssp             SSSS-SCCCEEEEEECS--S--EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETT----
T ss_pred             eEEe-eCCceEEEEecC--C--cEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecC----
Confidence            7777 899999999864  3  299999999999999987 443  234445667899999999 99999999864    


Q ss_pred             eEEEEEeCCCC------eeEEEecCCCC--------CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCC
Q 001163          577 SYLVEWNESEG------AVKRTYHGLGK--------RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGL  642 (1134)
Q Consensus       577 ~~i~~wd~~~~------~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  642 (1134)
                      +.+++|++...      +....+..|..        ..+.+++|+|++++|++++.||.|++||+.+++.+..+..+ +.
T Consensus       216 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-h~  294 (342)
T 1yfq_A          216 GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NE  294 (342)
T ss_dssp             SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SS
T ss_pred             CcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc-cC
Confidence            46999999887      77778877642        37999999999999999999999999999999998887643 15


Q ss_pred             CCcceEEEcCCCcEEEEEECCCc-EEEEE
Q 001163          643 QASPCIRFNKEGILLAVSTNDNG-IKILA  670 (1134)
Q Consensus       643 ~~v~~v~~sp~~~~l~~~~~dg~-i~iw~  670 (1134)
                      ..|.+++  |++.+|++++.||. .+.+.
T Consensus       295 ~~v~~~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          295 DSVVKIA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             SEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred             CCceEec--CCCCeEEEEecCCccccccc
Confidence            5788888  99999999999998 55444

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=6e-30  Score=291.17  Aligned_cols=291  Identities=17%  Similarity=0.229  Sum_probs=238.5

Q ss_pred             CceeEEEee-cCCCeeEEEEcCCC---CeEEEEEeCCCcEEEEecCC-ccceeeeceeeeeccccCccccccccccCCCC
Q 001163          346 PKTVVMTLN-QGSAVKSMDFHPVQ---QILLVVGTNMGDVMLWEVGS-RERIAVKSFKVWELGACSMPLQASLSSDYTAS  420 (1134)
Q Consensus       346 ~~~~~~~~~-h~~~V~~v~fsp~g---~~lla~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  420 (1134)
                      +.+.+..+. |.+.|++++|+|++   + ++++|+.||.|+|||+.+ +..+..                  .+.+|...
T Consensus        28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h~~~   88 (368)
T 3mmy_A           28 PMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMHTGP   88 (368)
T ss_dssp             TTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEE------------------EEEECSSC
T ss_pred             CcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEE------------------EeccccCC
Confidence            445566665 99999999999994   6 679999999999999987 443311                  25679999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEE--ecCCCceEEEEEeCCCeEEEEECCCCc
Q 001163          421 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAF--SYPNKQLSVVTCGEDRVIKVWDAVTGT  498 (1134)
Q Consensus       421 V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~--s~~~~~~~l~s~s~d~~i~iwd~~~~~  498 (1134)
                      |.+++|+|++++|++++.||.|++||+.+++...    +.+|...|.+++|  ++++.  +|++++.|+.|++||+.+++
T Consensus        89 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~  162 (368)
T 3mmy_A           89 VLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSSN  162 (368)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCSS
T ss_pred             EEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCCc
Confidence            9999999999999999999999999999987554    5679999999999  78887  89999999999999999999


Q ss_pred             eeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec--CCCCCeeEEEECcCCCE----EEEEecC
Q 001163          499 KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD--APGHSSTMMAYSADGAR----LFSCGTN  572 (1134)
Q Consensus       499 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~----l~~~~~~  572 (1134)
                      .+..+..|. .+.++.+.  .  ..+++++.++.+++|+++.........  .....+..+.+.++...    +++++.+
T Consensus       163 ~~~~~~~~~-~~~~~~~~--~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  237 (368)
T 3mmy_A          163 PMMVLQLPE-RCYCADVI--Y--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIE  237 (368)
T ss_dssp             CSEEEECSS-CEEEEEEE--T--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETT
T ss_pred             EEEEEecCC-CceEEEec--C--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCC
Confidence            999998765 56666553  3  478888999999999998765544332  23345666776665554    8888764


Q ss_pred             CCCCeEEEEEeCCCC---eeEEEecCCCCC-----------ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEec
Q 001163          573 KEGESYLVEWNESEG---AVKRTYHGLGKR-----------SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA  638 (1134)
Q Consensus       573 ~~~~~~i~~wd~~~~---~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  638 (1134)
                          +.|++||+...   .....+.+|...           .+.+++|+|++++|++++.||.|++||+.+++.+..+..
T Consensus       238 ----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  313 (368)
T 3mmy_A          238 ----GRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ  313 (368)
T ss_dssp             ----SEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred             ----CcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC
Confidence                46999999987   566777776542           599999999999999999999999999999999988875


Q ss_pred             CCCCCCcceEEEcCCCcEEEEEECCCcEEEEEcc
Q 001163          639 DGGLQASPCIRFNKEGILLAVSTNDNGIKILANA  672 (1134)
Q Consensus       639 ~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~  672 (1134)
                      +  ...|.+++|+|+|.+|++++.|+..+.|++.
T Consensus       314 ~--~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~  345 (368)
T 3mmy_A          314 L--DQPISACCFNHNGNIFAYASSYDWSKGHEFY  345 (368)
T ss_dssp             C--SSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred             C--CCCceEEEECCCCCeEEEEeccccccccccc
Confidence            5  6689999999999999999999866665543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.1e-30  Score=291.92  Aligned_cols=254  Identities=15%  Similarity=0.262  Sum_probs=217.2

Q ss_pred             ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecC--CCceEEEEEeCCCeEE
Q 001163          413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP--NKQLSVVTCGEDRVIK  490 (1134)
Q Consensus       413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~--~~~~~l~s~s~d~~i~  490 (1134)
                      .+.+|.+.|++++|+|++++||+|+.||.|+|||+..+. ......+.+|...|++++|+++  ++  +|++++.|+.|+
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~   82 (379)
T 3jrp_A            6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL   82 (379)
T ss_dssp             CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEE
T ss_pred             EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEE
Confidence            367899999999999999999999999999999998543 2233368899999999999987  77  899999999999


Q ss_pred             EEECCCCc--eeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCC--ceeeecCCCCCeeEEEECc-----
Q 001163          491 VWDAVTGT--KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG--SRVDYDAPGHSSTMMAYSA-----  561 (1134)
Q Consensus       491 iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~-----  561 (1134)
                      +||+.+++  .+..+.+|...|.+++|+++.++.++++++.|+.|++||+....  ....+..+...|.+++|+|     
T Consensus        83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  162 (379)
T 3jrp_A           83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  162 (379)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred             EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence            99999997  77888899999999999876436899999999999999998764  3445567788999999999     


Q ss_pred             --------CCCEEEEEecCCCCCeEEEEEeCCCCe----eEEEecCCCCCceEEEEEcCC---CCEEEEEeCCCeEEEEE
Q 001163          562 --------DGARLFSCGTNKEGESYLVEWNESEGA----VKRTYHGLGKRSVGVVQFDTT---KNRFLAAGDEFMIKFWD  626 (1134)
Q Consensus       562 --------~~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd  626 (1134)
                              ++.++++++.++    .|++||++++.    ....+.+|.. .+.+++|+|+   +++|++++.||.|++||
T Consensus       163 ~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd  237 (379)
T 3jrp_A          163 DGEHNGTKESRKFVTGGADN----LVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT  237 (379)
T ss_dssp             -------CTTCEEEEEETTS----CEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred             cccccCCCCCCEEEEEeCCC----eEEEEEecCCCcceeeEEEEecccC-cEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence                    699999998754    49999998764    4566777776 8999999999   89999999999999999


Q ss_pred             cCCCc---eeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163          627 MDNVN---LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       627 ~~~~~---~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      +.++.   ....+....+...|.+++|+|++++|++++.||.|++|++...
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          238 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred             CCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence            99875   2333333345778999999999999999999999999999865

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=2e-29  Score=284.38  Aligned_cols=253  Identities=11%  Similarity=0.170  Sum_probs=214.7

Q ss_pred             ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCcee-eeeeeeecCCCCEEEEEEec--CCCceEEEEEeCCCeE
Q 001163          413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDEL-RNHLEIEAHVGSVNDLAFSY--PNKQLSVVTCGEDRVI  489 (1134)
Q Consensus       413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~--~~~~~~l~s~s~d~~i  489 (1134)
                      ++.+|.+.|++++|+|++++||+|+.||.|++||+.++... .....+.+|...|++++|+|  +++  +|++++.|+.|
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v   83 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTV   83 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeE
Confidence            47899999999999999999999999999999999876422 23346789999999999999  577  89999999999


Q ss_pred             EEEECCCC---------ceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec------------
Q 001163          490 KVWDAVTG---------TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD------------  548 (1134)
Q Consensus       490 ~iwd~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~------------  548 (1134)
                      ++||+.++         +.+..+.+|...|.+++|++..++.++++++.||.|++||+........+.            
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  163 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP  163 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence            99999887         568888999999999999876335899999999999999998776543322            


Q ss_pred             -CCCCCeeEEEECcC---CCEEEEEecCCCCCeEEEEEeCCCCee--EEEecCCCCCceEEEEEcCCC----CEEEEEeC
Q 001163          549 -APGHSSTMMAYSAD---GARLFSCGTNKEGESYLVEWNESEGAV--KRTYHGLGKRSVGVVQFDTTK----NRFLAAGD  618 (1134)
Q Consensus       549 -~~~~~v~~~~~s~~---~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~  618 (1134)
                       .+...+.+++|+|+   +..+++++.+    ..+.+|+...++.  +..+.+|.. .|.+++|+|++    ++|++++.
T Consensus       164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~~p~~~~~~~~l~s~~~  238 (351)
T 3f3f_A          164 ANHLQSDFCLSWCPSRFSPEKLAVSALE----QAIIYQRGKDGKLHVAAKLPGHKS-LIRSISWAPSIGRWYQLIATGCK  238 (351)
T ss_dssp             SSCSCCCEEEEECCCSSSCCEEEEEETT----EEEEEEECTTSCEEEEEECCCCCS-CEEEEEECCCSSCSSEEEEEEET
T ss_pred             CCcccceeEEEeccCCCCCcEEEEecCC----CcEEEEccCCCceeeeeecCCCCc-ceeEEEECCCCCCcceEEEEEcC
Confidence             45568999999997   8899998754    4577787777765  667777776 89999999998    89999999


Q ss_pred             CCeEEEEEcCCC----------------------------------------------ceeEEEecCCCCCCcceEEEcC
Q 001163          619 EFMIKFWDMDNV----------------------------------------------NLLASIDADGGLQASPCIRFNK  652 (1134)
Q Consensus       619 dg~i~iwd~~~~----------------------------------------------~~~~~~~~~~~~~~v~~v~~sp  652 (1134)
                      ||.|++||+.++                                              +.+..+.  +|...|.+++|+|
T Consensus       239 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~s~  316 (351)
T 3f3f_A          239 DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD--DHNGEVWSVSWNL  316 (351)
T ss_dssp             TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEEC--TTSSCEEEEEECS
T ss_pred             CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEe--cccccEEEEEEcC
Confidence            999999999865                                              3444444  4467899999999


Q ss_pred             CCcEEEEEECCCcEEEEEccCC
Q 001163          653 EGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       653 ~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      ++++|++++.||.|++|++.++
T Consensus       317 ~~~~l~s~~~dg~v~iw~~~~~  338 (351)
T 3f3f_A          317 TGTILSSAGDDGKVRLWKATYS  338 (351)
T ss_dssp             SSCCEEEEETTSCEEEEEECTT
T ss_pred             CCCEEEEecCCCcEEEEecCcC
Confidence            9999999999999999999887

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=1.5e-29  Score=296.62  Aligned_cols=252  Identities=12%  Similarity=0.210  Sum_probs=205.7

Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCce--------eeeeeeeecCC------------CCEEEEEEecCC
Q 001163          416 DYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDE--------LRNHLEIEAHV------------GSVNDLAFSYPN  475 (1134)
Q Consensus       416 ~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~--------~~~~~~l~~h~------------~~V~~v~~s~~~  475 (1134)
                      .|.+.|++++|+|+|++||+|+.||.|+|||+.+++.        ......+.+|.            ..|++++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            4788999999999999999999999999999997762        11233688998            889999999998


Q ss_pred             CceEEEEEeCCCeEEEEECCCCcee---------------------------------------EE-ecCCCcCEEEEec
Q 001163          476 KQLSVVTCGEDRVIKVWDAVTGTKQ---------------------------------------YI-FEGHESPVYSICP  515 (1134)
Q Consensus       476 ~~~~l~s~s~d~~i~iwd~~~~~~~---------------------------------------~~-~~~h~~~v~~~~~  515 (1134)
                      ....|++++.|++|++||+.++...                                       .. ..+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence            2117999999999999998775442                                       12 3689999999999


Q ss_pred             cccCCccEEEEecCCCcEEEEecCCCCcee--------eecCCCCCeeEEEECcCC-CEEEEEecCCCCCeEEEEEeCCC
Q 001163          516 HHKENIQFIFSTATDGKIKAWLYDNLGSRV--------DYDAPGHSSTMMAYSADG-ARLFSCGTNKEGESYLVEWNESE  586 (1134)
Q Consensus       516 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~--------~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~  586 (1134)
                      ++  ++.+|+++ .|+.|++||+.......        .+..+...|.+++|+|++ +++++++.++    .|++||+++
T Consensus       186 ~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg----~i~iwd~~~  258 (447)
T 3dw8_B          186 NS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKG----TIRLCDMRA  258 (447)
T ss_dssp             CT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTS----CEEEEETTT
T ss_pred             cC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCC----eEEEEECcC
Confidence            76  45899998 79999999998433322        245677789999999998 8999998754    599999999


Q ss_pred             Cee----EEEecCCCC-----------CceEEEEEcCCCCEEEEEeCCCeEEEEEcCC-CceeEEEecCCCCCC------
Q 001163          587 GAV----KRTYHGLGK-----------RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN-VNLLASIDADGGLQA------  644 (1134)
Q Consensus       587 ~~~----~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~------  644 (1134)
                      ++.    +..+..+..           ..+.+++|+|++++|++++. +.|++||+.+ ++++..+..+.....      
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~  337 (447)
T 3dw8_B          259 SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLY  337 (447)
T ss_dssp             CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHH
T ss_pred             CccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccc
Confidence            887    788887764           27999999999999999999 9999999997 888888876532111      


Q ss_pred             -------cceEEEcCCCcEEEEEECCCcEEEEEccCCc
Q 001163          645 -------SPCIRFNKEGILLAVSTNDNGIKILANADGI  675 (1134)
Q Consensus       645 -------v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~  675 (1134)
                             +..++|+|++.+|++++.||.|++||+.++.
T Consensus       338 ~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~  375 (447)
T 3dw8_B          338 ENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR  375 (447)
T ss_dssp             HTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred             cccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence                   2349999999999999999999999999873

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=5.6e-29  Score=283.12  Aligned_cols=250  Identities=16%  Similarity=0.154  Sum_probs=202.5

Q ss_pred             ccccCCCCEEEEEEcCC---CCEEEEEeCCCEEEEEEccC-CceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCe
Q 001163          413 LSSDYTASVNRVMWSPD---GTLFGVAYSKHIVHLYTYHG-GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV  488 (1134)
Q Consensus       413 ~~~~h~~~V~~l~~spd---~~~las~s~dg~v~iwd~~~-~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~  488 (1134)
                      .+.+|.+.|++++|+|+   |++|++|+.||.|+|||+.+ +..+.  ..+.+|...|++++|+|+++  +|++++.|+.
T Consensus        34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~  109 (368)
T 3mmy_A           34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP--KAQQMHTGPVLDVCWSDDGS--KVFTASCDKT  109 (368)
T ss_dssp             CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE--EEEEECSSCEEEEEECTTSS--EEEEEETTSE
T ss_pred             eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE--EEeccccCCEEEEEECcCCC--EEEEEcCCCc
Confidence            36889999999999999   69999999999999999997 44331  25788999999999999999  8999999999


Q ss_pred             EEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEE
Q 001163          489 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFS  568 (1134)
Q Consensus       489 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  568 (1134)
                      |++||+.+++.+. +.+|...|.+++|.+.+++.+|++++.||.|++||+++.+....+..+. .+.++.+.+  ..+++
T Consensus       110 v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~  185 (368)
T 3mmy_A          110 AKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAVV  185 (368)
T ss_dssp             EEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEEE
T ss_pred             EEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeEE
Confidence            9999999998776 5569999999999777777999999999999999999888777776554 455555554  46666


Q ss_pred             EecCCCCCeEEEEEeCCCCeeEE-EecCCCCCceEEEEEcCCCCE----EEEEeCCCeEEEEEcCCC---ceeEEEecCC
Q 001163          569 CGTNKEGESYLVEWNESEGAVKR-TYHGLGKRSVGVVQFDTTKNR----FLAAGDEFMIKFWDMDNV---NLLASIDADG  640 (1134)
Q Consensus       569 ~~~~~~~~~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~----l~~~~~dg~i~iwd~~~~---~~~~~~~~~~  640 (1134)
                      ++.++    .+.+|++....... ...........++++.++...    +++++.||.|++||+...   ..+..+..+.
T Consensus       186 ~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~  261 (368)
T 3mmy_A          186 ATAER----GLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHR  261 (368)
T ss_dssp             EEGGG----CEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSE
T ss_pred             EeCCC----cEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeee
Confidence            66543    49999998765433 333333335666766665544    999999999999999987   5566666542


Q ss_pred             CC----------CCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163          641 GL----------QASPCIRFNKEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       641 ~~----------~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      ..          ..|.+++|+|++++|++++.||.|++||+.++
T Consensus       262 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~  305 (368)
T 3mmy_A          262 SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR  305 (368)
T ss_dssp             EC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred             cccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC
Confidence            11          16999999999999999999999999999876

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=5.4e-29  Score=289.93  Aligned_cols=234  Identities=18%  Similarity=0.320  Sum_probs=208.3

Q ss_pred             ccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEEC
Q 001163          415 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDA  494 (1134)
Q Consensus       415 ~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~  494 (1134)
                      .+|...|.|++|  ++++|++|+.||.|++||+.+++...   .+.+|.+.|.+++|  +++  +|++|+.||+|++||+
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~  200 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV  200 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence            457788999887  89999999999999999999988665   68899999999999  677  8999999999999999


Q ss_pred             CCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCce---eeecCCCCCeeEEEECcCCCEEEEEec
Q 001163          495 VTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR---VDYDAPGHSSTMMAYSADGARLFSCGT  571 (1134)
Q Consensus       495 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~  571 (1134)
                      .+++.+..+.+|...|.+++|+  +  ..+++++.||.|++||+......   ..+..+...|.++++  +++++++++.
T Consensus       201 ~~~~~~~~~~~h~~~v~~l~~~--~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~  274 (435)
T 1p22_A          201 NTGEMLNTLIHHCEAVLHLRFN--N--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG  274 (435)
T ss_dssp             SSCCEEEEECCCCSCEEEEECC--T--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred             CCCcEEEEEcCCCCcEEEEEEc--C--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence            9999999999999999999984  2  58999999999999999887655   456777889999998  7889999976


Q ss_pred             CCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEc
Q 001163          572 NKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFN  651 (1134)
Q Consensus       572 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  651 (1134)
                      +    +.|++||+.+++.+..+.+|.. .+.++.+  +++++++|+.||.|++||+.+++.+..+..|  ...|.+++| 
T Consensus       275 d----g~i~vwd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~-  344 (435)
T 1p22_A          275 D----RTIKVWNTSTCEFVRTLNGHKR-GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGH--EELVRCIRF-  344 (435)
T ss_dssp             T----SEEEEEETTTCCEEEEEECCSS-CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCC--SSCEEEEEC-
T ss_pred             C----CeEEEEECCcCcEEEEEcCCCC-cEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCC--cCcEEEEEe-
Confidence            4    4699999999999999998876 8888888  4689999999999999999999999988755  668999998 


Q ss_pred             CCCcEEEEEECCCcEEEEEccCC
Q 001163          652 KEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       652 p~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                       ++.+|++|+.||.|++||+.++
T Consensus       345 -~~~~l~sg~~dg~i~vwd~~~~  366 (435)
T 1p22_A          345 -DNKRIVSGAYDGKIKVWDLVAA  366 (435)
T ss_dssp             -CSSEEEEEETTSCEEEEEHHHH
T ss_pred             -cCCEEEEEeCCCcEEEEECCCC
Confidence             7889999999999999998654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=5.6e-29  Score=280.05  Aligned_cols=248  Identities=10%  Similarity=-0.007  Sum_probs=208.7

Q ss_pred             cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163          414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD  493 (1134)
Q Consensus       414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd  493 (1134)
                      ..+|.+.|++++|+|++++|++++.|+.|+|||+.+++.......+.+|...|.+++|+|+++. +|++|+.|+.|++||
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd   85 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD   85 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEE
Confidence            4689999999999999999999999999999999988732223346689999999999999872 389999999999999


Q ss_pred             C-CCCceeEEecC--CCcCEEEEeccccCCccEEEEecCCCcEEEEecCC---------CCceeeecCCCCCeeEEEECc
Q 001163          494 A-VTGTKQYIFEG--HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN---------LGSRVDYDAPGHSSTMMAYSA  561 (1134)
Q Consensus       494 ~-~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~---------~~~~~~~~~~~~~v~~~~~s~  561 (1134)
                      + .+++. ..+.+  |...|.+++|++   +.++++++.|+.|++||+..         ......+. +...+.+++|+|
T Consensus        86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~  160 (342)
T 1yfq_A           86 LIGSPSF-QALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS  160 (342)
T ss_dssp             SSSSSSE-EECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred             eccCCce-EeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence            9 77755 77888  999999999976   47999999999999999987         55555555 677899999999


Q ss_pred             CCCEEEEEecCCCCCeEEEEEeCCC-Cee--EEEecCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCC------c
Q 001163          562 DGARLFSCGTNKEGESYLVEWNESE-GAV--KRTYHGLGKRSVGVVQFDT-TKNRFLAAGDEFMIKFWDMDNV------N  631 (1134)
Q Consensus       562 ~~~~l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~------~  631 (1134)
                      ++  +++++.+    +.|++||+++ +..  ......+. ..+.+++|+| +++++++++.||.|++|+++..      +
T Consensus       161 ~~--l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~  233 (342)
T 1yfq_A          161 SR--LIVGMNN----SQVQWFRLPLCEDDNGTIEESGLK-YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS  233 (342)
T ss_dssp             SE--EEEEEST----TEEEEEESSCCTTCCCEEEECSCS-SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred             Cc--EEEEeCC----CeEEEEECCccccccceeeecCCC-CceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccc
Confidence            88  7777654    3699999998 542  23333344 4899999999 9999999999999999999887      7


Q ss_pred             eeEEEecCCC-------CCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163          632 LLASIDADGG-------LQASPCIRFNKEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       632 ~~~~~~~~~~-------~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      ....+..+..       ...|.+++|+|++++|++++.||.|++||+.++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  283 (342)
T 1yfq_A          234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR  283 (342)
T ss_dssp             TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred             cceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH
Confidence            7788876532       348999999999999999999999999999877

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=6.8e-29  Score=280.01  Aligned_cols=261  Identities=10%  Similarity=0.125  Sum_probs=217.3

Q ss_pred             ecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC--CCC
Q 001163          354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGT  431 (1134)
Q Consensus       354 ~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~~  431 (1134)
                      +|.+.|++++|+|+|+ +|++|+.||.|+|||+.++......               ...+.+|...|++++|+|  |++
T Consensus         9 gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~---------------~~~~~~~~~~v~~~~~~~~~d~~   72 (351)
T 3f3f_A            9 GHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWEL---------------SDSWRAHDSSIVAIDWASPEYGR   72 (351)
T ss_dssp             CCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEEE---------------EEEEECCSSCEEEEEECCGGGCS
T ss_pred             ccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCccee---------------cceeccCCCcEEEEEEcCCCCCC
Confidence            4999999999999999 5689999999999999876432110               012568999999999999  699


Q ss_pred             EEEEEeCCCEEEEEEccCCce------eeeeeeeecCCCCEEEEEEecC--CCceEEEEEeCCCeEEEEECCCCceeEEe
Q 001163          432 LFGVAYSKHIVHLYTYHGGDE------LRNHLEIEAHVGSVNDLAFSYP--NKQLSVVTCGEDRVIKVWDAVTGTKQYIF  503 (1134)
Q Consensus       432 ~las~s~dg~v~iwd~~~~~~------~~~~~~l~~h~~~V~~v~~s~~--~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  503 (1134)
                      +|++|+.||.|++||+.+++.      ......+.+|...|.+++|+|+  +.  +|++++.|+.|++||+.+++.+..+
T Consensus        73 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~  150 (351)
T 3f3f_A           73 IIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDLRSW  150 (351)
T ss_dssp             EEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCTTCC
T ss_pred             EEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHhccc
Confidence            999999999999999988642      1234467899999999999999  88  8999999999999999988765543


Q ss_pred             c-------------CCCcCEEEEecccc-CCccEEEEecCCCcEEEEecCCCCc--eeeecCCCCCeeEEEECcCC----
Q 001163          504 E-------------GHESPVYSICPHHK-ENIQFIFSTATDGKIKAWLYDNLGS--RVDYDAPGHSSTMMAYSADG----  563 (1134)
Q Consensus       504 ~-------------~h~~~v~~~~~~~~-~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~~~----  563 (1134)
                      .             +|...+.+++|++. .++.++++++.|+.+.+|+......  ...+..|...|.+++|+|++    
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~  230 (351)
T 3f3f_A          151 TLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWY  230 (351)
T ss_dssp             EEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSS
T ss_pred             cccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcc
Confidence            3             68889999999775 1247999999999998888776654  44566678899999999998    


Q ss_pred             CEEEEEecCCCCCeEEEEEeCCCC----------------------------------------------eeEEEecCCC
Q 001163          564 ARLFSCGTNKEGESYLVEWNESEG----------------------------------------------AVKRTYHGLG  597 (1134)
Q Consensus       564 ~~l~~~~~~~~~~~~i~~wd~~~~----------------------------------------------~~~~~~~~~~  597 (1134)
                      ++|++++.|+    .|++||+.++                                              +.+..+.+|.
T Consensus       231 ~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  306 (351)
T 3f3f_A          231 QLIATGCKDG----RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHN  306 (351)
T ss_dssp             EEEEEEETTS----CEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTS
T ss_pred             eEEEEEcCCC----eEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccc
Confidence            7899988654    5999999875                                              5677778777


Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Q 001163          598 KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID  637 (1134)
Q Consensus       598 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  637 (1134)
                      . .|.+++|+|++++|++++.||.|++||+.+++.+..+.
T Consensus       307 ~-~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~  345 (351)
T 3f3f_A          307 G-EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS  345 (351)
T ss_dssp             S-CEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred             c-cEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence            6 89999999999999999999999999999887666554

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9.6e-29  Score=282.54  Aligned_cols=254  Identities=14%  Similarity=0.175  Sum_probs=210.5

Q ss_pred             ecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCc--cceeeeceeeeeccccCccccccccccCCCCEEEEEEcCC--
Q 001163          354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSR--ERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD--  429 (1134)
Q Consensus       354 ~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--  429 (1134)
                      +|...|++++|+|+|+ ++|+|+.||.|+|||+..+  +.+.                   .+.+|...|++++|+|+  
T Consensus         9 ~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~   68 (379)
T 3jrp_A            9 AHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHPKF   68 (379)
T ss_dssp             ECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEE-------------------EECCCSSCEEEEEECCGGG
T ss_pred             CCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceeee-------------------EecCCCCcEEEEEeCCCCC
Confidence            4999999999999999 5689999999999999743  3322                   25789999999999987  


Q ss_pred             CCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecC--CCceEEEEEeCCCeEEEEECCCCc--eeEEecC
Q 001163          430 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP--NKQLSVVTCGEDRVIKVWDAVTGT--KQYIFEG  505 (1134)
Q Consensus       430 ~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~--~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~  505 (1134)
                      +++|++|+.||.|++||+.+++.. ....+.+|...|.+++|+|+  +.  +|++++.|+.|++||+.++.  ....+.+
T Consensus        69 ~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~~~  145 (379)
T 3jrp_A           69 GTILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIIDA  145 (379)
T ss_dssp             CSEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCCEEEEEC
T ss_pred             CCEEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCceeeEEecC
Confidence            999999999999999999998622 23357789999999999999  77  89999999999999998874  4456778


Q ss_pred             CCcCEEEEeccccC-----------CccEEEEecCCCcEEEEecCCCCce----eeecCCCCCeeEEEECcC---CCEEE
Q 001163          506 HESPVYSICPHHKE-----------NIQFIFSTATDGKIKAWLYDNLGSR----VDYDAPGHSSTMMAYSAD---GARLF  567 (1134)
Q Consensus       506 h~~~v~~~~~~~~~-----------~~~~l~s~s~dg~i~vwd~~~~~~~----~~~~~~~~~v~~~~~s~~---~~~l~  567 (1134)
                      |...|.+++|++..           ++.++++++.|+.|++||+......    ..+..|...|.+++|+|+   +++|+
T Consensus       146 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~  225 (379)
T 3jrp_A          146 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLA  225 (379)
T ss_dssp             CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred             CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEE
Confidence            99999999998742           4689999999999999999876543    345667889999999999   89999


Q ss_pred             EEecCCCCCeEEEEEeCCCCe---eEEEecC-CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeE
Q 001163          568 SCGTNKEGESYLVEWNESEGA---VKRTYHG-LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLA  634 (1134)
Q Consensus       568 ~~~~~~~~~~~i~~wd~~~~~---~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  634 (1134)
                      +++.++    .|++||+.++.   ....+.. .....+.+++|+|++++|++++.||.|++|++..+....
T Consensus       226 s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~  292 (379)
T 3jrp_A          226 SVSQDR----TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE  292 (379)
T ss_dssp             EEETTS----CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEEE
T ss_pred             EEeCCC----EEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCccc
Confidence            998654    49999998864   2222222 133489999999999999999999999999998654433

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=8.3e-29  Score=285.26  Aligned_cols=249  Identities=15%  Similarity=0.169  Sum_probs=208.7

Q ss_pred             CCEEEEEEcCCCCEEE-EEeCCCEEEEEEccCCcee-eeeeeeecCCCCEEEEEEec-CCCceEEEEEeCCCeEEEEECC
Q 001163          419 ASVNRVMWSPDGTLFG-VAYSKHIVHLYTYHGGDEL-RNHLEIEAHVGSVNDLAFSY-PNKQLSVVTCGEDRVIKVWDAV  495 (1134)
Q Consensus       419 ~~V~~l~~spd~~~la-s~s~dg~v~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~-~~~~~~l~s~s~d~~i~iwd~~  495 (1134)
                      .....++++|+...++ +++.||.|+|||+...... .....+.+|.+.|++++|+| +++  +|++|+.|++|++||+.
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~  112 (402)
T 2aq5_A           35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIP  112 (402)
T ss_dssp             CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECC
T ss_pred             cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEcc
Confidence            3455689999876544 5789999999999664322 23335789999999999999 777  89999999999999999


Q ss_pred             CC-------ceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeee--cCCCCCeeEEEECcCCCEE
Q 001163          496 TG-------TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY--DAPGHSSTMMAYSADGARL  566 (1134)
Q Consensus       496 ~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l  566 (1134)
                      ++       +.+..+.+|...|.+++|+++.. .+|++++.|+.|++||+.+.+....+  ..+...|.+++|+|++++|
T Consensus       113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  191 (402)
T 2aq5_A          113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQ-NVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI  191 (402)
T ss_dssp             TTCCSSCBCSCSEEEECCSSCEEEEEECSSBT-TEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCE
T ss_pred             CCCCccccCCceEEecCCCCeEEEEEECcCCC-CEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEE
Confidence            88       67888999999999999976532 59999999999999999988887777  6788899999999999999


Q ss_pred             EEEecCCCCCeEEEEEeCCCCeeEEEe-cCCCCCceEEEEEcCCCCEEEEE---eCCCeEEEEEcCCCce-eEEEecCCC
Q 001163          567 FSCGTNKEGESYLVEWNESEGAVKRTY-HGLGKRSVGVVQFDTTKNRFLAA---GDEFMIKFWDMDNVNL-LASIDADGG  641 (1134)
Q Consensus       567 ~~~~~~~~~~~~i~~wd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~~~~~~  641 (1134)
                      ++++.++    .|++||+++++.+..+ ..|....+..+.|+|++.++++|   +.|+.|++||+.+++. +..... .+
T Consensus       192 ~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~  266 (402)
T 2aq5_A          192 CTSCRDK----RVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DT  266 (402)
T ss_dssp             EEEETTS----EEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CC
T ss_pred             EEEecCC----cEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cC
Confidence            9998644    6999999999999998 67776558999999999999998   7999999999998765 333332 33


Q ss_pred             CCCcceEEEcCCCcEEEE-EECCCcEEEEEccCCc
Q 001163          642 LQASPCIRFNKEGILLAV-STNDNGIKILANADGI  675 (1134)
Q Consensus       642 ~~~v~~v~~sp~~~~l~~-~~~dg~i~iw~~~~~~  675 (1134)
                      ...+.+++|+|++++|++ ++.||.|++|++.++.
T Consensus       267 ~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          267 SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             CSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred             CCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence            557899999999999875 4579999999998764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.5e-28  Score=281.55  Aligned_cols=300  Identities=12%  Similarity=0.067  Sum_probs=232.8

Q ss_pred             CCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCcc---ceeeeceeeeecccc----------------------------
Q 001163          357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRE---RIAVKSFKVWELGAC----------------------------  405 (1134)
Q Consensus       357 ~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~----------------------------  405 (1134)
                      .+|.+++|+|||+ +++++ .++.|++||+.+|+   .+..     |.....                            
T Consensus         5 ~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (450)
T 2vdu_B            5 HPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGK-----WSDDFDKIQESRNTTAKEQQGQSSENENENKKLK   77 (450)
T ss_dssp             CCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEE-----EECCC-----------------------------
T ss_pred             ccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeee-----cCCccccccccccccchhhccccccccccccccc
Confidence            5788999999999 44444 57899999999998   3332     221100                            


Q ss_pred             ------------CccccccccccCCCCEEEEEEcCCCCEE-EEEeCCCEEEEEEcc--CCceeeeeeeeecCCCCEEEEE
Q 001163          406 ------------SMPLQASLSSDYTASVNRVMWSPDGTLF-GVAYSKHIVHLYTYH--GGDELRNHLEIEAHVGSVNDLA  470 (1134)
Q Consensus       406 ------------~~~~~~~~~~~h~~~V~~l~~spd~~~l-as~s~dg~v~iwd~~--~~~~~~~~~~l~~h~~~V~~v~  470 (1134)
                                  ..........+|.+.|.+++|+|++++| |+|+.||.|+|||+.  +++.+... ....|...|++++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~v~~~~  156 (450)
T 2vdu_B           78 SNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLR-KRFCFSKRPNAIS  156 (450)
T ss_dssp             ----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEE-EEEECSSCEEEEE
T ss_pred             cCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeee-ecccCCCCceEEE
Confidence                        0000001123677789999999999996 899999999999999  77766532 1236789999999


Q ss_pred             EecCCCceEEEEEeCCCeEEEEECCCCceeE----EecCCCcCEEEEecccc-CCccEEEEecCCCcEEEEecCCCCcee
Q 001163          471 FSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY----IFEGHESPVYSICPHHK-ENIQFIFSTATDGKIKAWLYDNLGSRV  545 (1134)
Q Consensus       471 ~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~----~~~~h~~~v~~~~~~~~-~~~~~l~s~s~dg~i~vwd~~~~~~~~  545 (1134)
                      |+|+++  +|++|+.|+.|++|++.+++...    .+.+|...|.+++|+++ ..+.+|++++.|+.|++||+.......
T Consensus       157 ~sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~  234 (450)
T 2vdu_B          157 IAEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD  234 (450)
T ss_dssp             ECTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred             EcCCCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence            999999  89999999999999998887554    78889999999999876 225899999999999999999887776


Q ss_pred             e-ecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCC------------------------CCCc
Q 001163          546 D-YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL------------------------GKRS  600 (1134)
Q Consensus       546 ~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~------------------------~~~~  600 (1134)
                      . +..|...|.+++|+ ++++|++++.+    +.|++||+.+++.+..+..+                        ....
T Consensus       235 ~~~~~h~~~v~~~~~s-d~~~l~s~~~d----~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (450)
T 2vdu_B          235 KWLFGHKHFVSSICCG-KDYLLLSAGGD----DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA  309 (450)
T ss_dssp             EECCCCSSCEEEEEEC-STTEEEEEESS----SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred             eeecCCCCceEEEEEC-CCCEEEEEeCC----CeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence            6 55788899999999 99999999864    46999999999988887632                        1236


Q ss_pred             eEEEEEcCCCCEEEEEe-CCCeEEEEEc--CCC---ceeEEEecCCCCCCcceEEEcCCCcEEEEEEC------CCcEEE
Q 001163          601 VGVVQFDTTKNRFLAAG-DEFMIKFWDM--DNV---NLLASIDADGGLQASPCIRFNKEGILLAVSTN------DNGIKI  668 (1134)
Q Consensus       601 v~~~~~~~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~------dg~i~i  668 (1134)
                      +..++|+|+++++++++ .++.|++|++  .++   +.+..+..+   ..+.+++|+|++.++++++.      +..|.+
T Consensus       310 v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v  386 (450)
T 2vdu_B          310 VSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKF  386 (450)
T ss_dssp             EEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEE
T ss_pred             EEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEE
Confidence            88999999999999999 8999999999  555   556666644   57899999996544444332      456899


Q ss_pred             EEccCC
Q 001163          669 LANADG  674 (1134)
Q Consensus       669 w~~~~~  674 (1134)
                      |.+...
T Consensus       387 ~~~~~~  392 (450)
T 2vdu_B          387 IEYNLN  392 (450)
T ss_dssp             EEEETT
T ss_pred             EEEEcC
Confidence            987643

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=1.1e-26  Score=270.66  Aligned_cols=310  Identities=14%  Similarity=0.089  Sum_probs=225.6

Q ss_pred             eeeeEeCCCCCCcccccCCCCCceeEEEeecCCCeeEEE---EcCCCCeEEEEE-------------eCCCcEEEEecC-
Q 001163          325 ILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMD---FHPVQQILLVVG-------------TNMGDVMLWEVG-  387 (1134)
Q Consensus       325 i~~~~~s~~~~~l~~~~~d~~~~~~~~~~~h~~~V~~v~---fsp~g~~lla~g-------------s~dg~v~iwd~~-  387 (1134)
                      |..+.+.|....+........+... ........+..++   |+|+++.+++..             +.++.+.||.++ 
T Consensus        30 ~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~  108 (433)
T 3bws_A           30 IVKFSIHPYKGTVIRLGEEILPFKV-LEMDKNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDK  108 (433)
T ss_dssp             EEEEEEECCTTCEEEETTEECCEEE-EEEETTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCB
T ss_pred             EEEEecccccCceEEcCceecceee-eecccCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECC
Confidence            3466777764443333222222211 1123566788888   999887654432             223323444433 


Q ss_pred             -CccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeee--eeecCCC
Q 001163          388 -SRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHL--EIEAHVG  464 (1134)
Q Consensus       388 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~--~l~~h~~  464 (1134)
                       ++.......                 +. ....+.+++|+|++.++++++.++.|++||+.+++......  .+.+|.+
T Consensus       109 ~~~~~~~~~~-----------------~~-~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~  170 (433)
T 3bws_A          109 EGITHRFISR-----------------FK-TGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLG  170 (433)
T ss_dssp             TTCSEEEEEE-----------------EE-CSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCC
T ss_pred             CCCcceEEEE-----------------Ec-CCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCC
Confidence             232111100                 12 23456699999988888888889999999999988654221  2458999


Q ss_pred             CEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEE-EEecCCCcEEEEecCCCCc
Q 001163          465 SVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFI-FSTATDGKIKAWLYDNLGS  543 (1134)
Q Consensus       465 ~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~dg~i~vwd~~~~~~  543 (1134)
                      .|.+++|++++.  ++++++.|+.|++||+.+++.+..+..|...+.+++|+++.  ..+ ++++.|+.|++||+.+.+.
T Consensus       171 ~v~~~~~~~~~~--~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~i~~~d~~~~~~  246 (433)
T 3bws_A          171 FVETISIPEHNE--LWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIR--DLVYCSNWISEDISVIDRKTKLE  246 (433)
T ss_dssp             EEEEEEEGGGTE--EEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTT--TEEEEEETTTTEEEEEETTTTEE
T ss_pred             ceeEEEEcCCCE--EEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCC--CEEEEEecCCCcEEEEECCCCcE
Confidence            999999999988  89999999999999999999999999999999999997644  555 5666899999999987766


Q ss_pred             eeeecCCCCCeeEEEECcCCCEEEEEecCCC----CCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEE-EEeC
Q 001163          544 RVDYDAPGHSSTMMAYSADGARLFSCGTNKE----GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFL-AAGD  618 (1134)
Q Consensus       544 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~----~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~  618 (1134)
                      ...+.. ...+.+++|+|+++.+++++.+..    .++.|++||+.+++.+..+.. .. .+..++|+|+++.++ +++.
T Consensus       247 ~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~-~~-~~~~~~~~~~g~~l~~~~~~  323 (433)
T 3bws_A          247 IRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP-PG-NKRHIVSGNTENKIYVSDMC  323 (433)
T ss_dssp             EEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE-EE-CEEEEEECSSTTEEEEEETT
T ss_pred             EEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC-CC-CcceEEECCCCCEEEEEecC
Confidence            555544 446899999999999998875321    356799999999988776632 22 678899999997664 5579


Q ss_pred             CCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECC
Q 001163          619 EFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND  663 (1134)
Q Consensus       619 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d  663 (1134)
                      ++.|++||+.+++.+..+..   ...+.+++|+|+|+++++++.+
T Consensus       324 ~~~v~v~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~  365 (433)
T 3bws_A          324 CSKIEVYDLKEKKVQKSIPV---FDKPNTIALSPDGKYLYVSCRG  365 (433)
T ss_dssp             TTEEEEEETTTTEEEEEEEC---SSSEEEEEECTTSSEEEEEECC
T ss_pred             CCEEEEEECCCCcEEEEecC---CCCCCeEEEcCCCCEEEEEecC
Confidence            99999999999998888763   3468899999999998888763

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=1.1e-27  Score=253.98  Aligned_cols=219  Identities=13%  Similarity=0.140  Sum_probs=166.2

Q ss_pred             ccccEEEEEEecC----CceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEE
Q 001163          775 TAMRVSRLIYTNS----GLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFA  850 (1134)
Q Consensus       775 ~~~~i~~l~~spd----g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~  850 (1134)
                      +...|.+++|+||    ++.+++++.+  +.+|++                                             
T Consensus       110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l---------------------------------------------  142 (356)
T 2w18_A          110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGL---------------------------------------------  142 (356)
T ss_dssp             SEEEEEEECC------CCEEEEEEEEE--EEEEEE---------------------------------------------
T ss_pred             cccceEEEEECCCccccccEEEeCCCe--EEEEec---------------------------------------------
Confidence            4567889999999    9988887744  556632                                             


Q ss_pred             EcCCCCeEEEee---CCeEEEEEc-cCCeEEEEecCCCCCeEEEEEcC--CCCcEEEEEeCCCcEEEEEcccceEEEecc
Q 001163          851 LSKNDSYVMSAS---GGKISLFNM-MTFKTMTTFMPPPPAATFLAFHP--QDNNIIAIGMEDSSIQIYNVRVDEVKTKLK  924 (1134)
Q Consensus       851 ~s~dg~~la~~s---dg~i~lwd~-~~~~~~~~~~~~~~~v~~l~~sp--~~~~~la~g~~dg~i~iwd~~~~~~~~~l~  924 (1134)
                        ++|+++.++.   |+.|++|++ .+++.+..+.+|...++.++|++  +++.+||+|+.|++|+|||+.+|++++++.
T Consensus       143 --~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~  220 (356)
T 2w18_A          143 --TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMH  220 (356)
T ss_dssp             --TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             --CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEc
Confidence              3566666643   788999998 55888888888888888888887  467899999999999999999999999998


Q ss_pred             Ccc---CceEEEEEeeCCCEE------------EEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCC
Q 001163          925 GHQ---KRITGLAFSNTLNVL------------VSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQ  989 (1134)
Q Consensus       925 ~h~---~~V~~l~~s~d~~~l------------~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg  989 (1134)
                      +|.   ..+.+++|+|+|.++            ++|+.|++|++||..+++.........+.+|..   .  .+..+.++
T Consensus       221 g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~---~--~lsg~~sg  295 (356)
T 2w18_A          221 IDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAG---R--FLEGDVKD  295 (356)
T ss_dssp             CCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCC---C--EEEEEEET
T ss_pred             CCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcc---e--eEccccCC
Confidence            754   367788999999886            668889999999999876443222223445542   2  23334447


Q ss_pred             CEEEEE-eeceEEEEeCCCcccceeeccCCCccCEE-EEEEccCCCEEEEEecCCcEEEeec
Q 001163          990 THLLAV-HETQIAIYEAPKLECLKQFVPREASGPIT-HATYSCDSQSIYVAFEEGSVGVLTA 1049 (1134)
Q Consensus       990 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~-~~~~s~dg~~l~s~s~Dg~i~vwd~ 1049 (1134)
                      .+++++ .|++|+|||+.+++++.++.  +|...+. +++|||||++|++|+.|++|+|||+
T Consensus       296 ~~lASgS~DgTIkIWDl~tGk~l~tL~--gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          296 HCAAAILTSGTIAIWDLLLGQCTALLP--PVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             TEEEEEETTSCEEEEETTTCSEEEEEC--CC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CEEEEEcCCCcEEEEECCCCcEEEEec--CCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            788884 79999999999999999987  6766554 6899999999999999999999996

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=1.2e-27  Score=277.72  Aligned_cols=266  Identities=13%  Similarity=0.246  Sum_probs=215.1

Q ss_pred             eEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC
Q 001163          349 VVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP  428 (1134)
Q Consensus       349 ~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  428 (1134)
                      ....+.|.+.|++++|+|++..++|+|+.||.|+|||+.+......         ..........+.+|...|.+++|+|
T Consensus       121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---------~~~~~~~~~~~~~h~~~v~~l~~~~  191 (430)
T 2xyi_A          121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---------PSGECQPDLRLRGHQKEGYGLSWNP  191 (430)
T ss_dssp             EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---------TTCCCCCSEEEECCSSCCCCEEECT
T ss_pred             EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC---------ccccCCCcEEecCCCCCeEEEEeCC
Confidence            4566779999999999998666889999999999999976311000         0000001112578999999999999


Q ss_pred             CCC-EEEEEeCCCEEEEEEccCCce----eeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC---cee
Q 001163          429 DGT-LFGVAYSKHIVHLYTYHGGDE----LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG---TKQ  500 (1134)
Q Consensus       429 d~~-~las~s~dg~v~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~---~~~  500 (1134)
                      ++. +|++|+.||.|++||+.++..    +.....+.+|...|.+++|+|++.. +|++++.|+.|++||++++   +.+
T Consensus       192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~  270 (430)
T 2xyi_A          192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPS  270 (430)
T ss_dssp             TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCS
T ss_pred             CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcce
Confidence            998 999999999999999987432    2223457789999999999995444 7999999999999999987   577


Q ss_pred             EEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCC-CceeeecCCCCCeeEEEECcCCC-EEEEEecCCCCCeE
Q 001163          501 YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL-GSRVDYDAPGHSSTMMAYSADGA-RLFSCGTNKEGESY  578 (1134)
Q Consensus       501 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~  578 (1134)
                      ..+..|...|.+++|++... .++++|+.||.|++||++.. .....+..+...|.+++|+|+++ ++++++.++    .
T Consensus       271 ~~~~~~~~~v~~i~~~p~~~-~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~----~  345 (430)
T 2xyi_A          271 HTVDAHTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR----R  345 (430)
T ss_dssp             EEEECCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS----C
T ss_pred             eEeecCCCCeEEEEeCCCCC-CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCC----c
Confidence            88889999999999976542 47999999999999999974 45667777888999999999996 577776543    5


Q ss_pred             EEEEeCCC--------------CeeEEEecCCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEEcCCC
Q 001163          579 LVEWNESE--------------GAVKRTYHGLGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNV  630 (1134)
Q Consensus       579 i~~wd~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~  630 (1134)
                      |++||+..              .+.+..+.+|.. .+..++|+|++. .+++++.||.|++|++...
T Consensus       346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-KISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-CEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             EEEEeCCCCccccCccccccCCcceEEEcCCCCC-CceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            99999987              356677777766 899999999998 8999999999999998754

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=1.6e-27  Score=268.42  Aligned_cols=276  Identities=14%  Similarity=0.136  Sum_probs=214.2

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la  434 (1134)
                      |...|++++|||||+ ++|+|+.++ ++|||+.+++....                     .+...+..+++++++++++
T Consensus        18 h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~   74 (355)
T 3vu4_A           18 VSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMS---------------------QEMRHLSKVRMLHRTNYVA   74 (355)
T ss_dssp             -CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEE---------------------EECSCCCEEEECTTSSEEE
T ss_pred             CCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeee---------------------eecCCeEEEEEcCCCCEEE
Confidence            899999999999999 568888775 78999988765432                     1223588899999988884


Q ss_pred             -EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC-ceeEEecCCCcCEEE
Q 001163          435 -VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHESPVYS  512 (1134)
Q Consensus       435 -s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~~v~~  512 (1134)
                       +++.|++|+|||+.+++.+.   .+. |...|.+++|+++.    ++.+ .|+.|++||+.++ +.+..+..   +...
T Consensus        75 ~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~  142 (355)
T 3vu4_A           75 FVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVS-YGDVISVFKFGNPWKRITDDIR---FGGV  142 (355)
T ss_dssp             EECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEE
T ss_pred             EEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEE-EcCEEEEEECCCCceeeEEecc---CCce
Confidence             67788999999999998765   343 67799999998764    3333 4789999999998 77766654   3333


Q ss_pred             EeccccCCccEEEE--ecCCCcEEEEecCCCC----------------ceeeecCCCCCeeEEEECcCCCEEEEEecCCC
Q 001163          513 ICPHHKENIQFIFS--TATDGKIKAWLYDNLG----------------SRVDYDAPGHSSTMMAYSADGARLFSCGTNKE  574 (1134)
Q Consensus       513 ~~~~~~~~~~~l~s--~s~dg~i~vwd~~~~~----------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~  574 (1134)
                      +++++    .+++.  |+.||.|++||+....                ....+..|...|.+++|+|+|++|++++.|  
T Consensus       143 ~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d--  216 (355)
T 3vu4_A          143 CEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQD--  216 (355)
T ss_dssp             EEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETT--
T ss_pred             EEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCC--
Confidence            44443    34544  6899999999998754                156678888999999999999999999864  


Q ss_pred             CCeE-EEEEeCCCCeeEEEec-C-CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeE--E--------------
Q 001163          575 GESY-LVEWNESEGAVKRTYH-G-LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLA--S--------------  635 (1134)
Q Consensus       575 ~~~~-i~~wd~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~--------------  635 (1134)
                        +. |++||+.+++.+..+. + |. ..|.+++|+|++++|++++.|++|++||+..+....  .              
T Consensus       217 --~~~v~iwd~~~~~~~~~~~~g~h~-~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (355)
T 3vu4_A          217 --GTIIRVFKTEDGVLVREFRRGLDR-ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEW  293 (355)
T ss_dssp             --CSEEEEEETTTCCEEEEEECTTCC-SCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSS
T ss_pred             --CCEEEEEECCCCcEEEEEEcCCCC-CcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeecccccccc
Confidence              45 9999999999999998 5 55 499999999999999999999999999997653211  1              


Q ss_pred             ----Eec-CCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163          636 ----IDA-DGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       636 ----~~~-~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                          ... .........++|+++++++++++.||.+++|++..+
T Consensus       294 ~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~  337 (355)
T 3vu4_A          294 SLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD  337 (355)
T ss_dssp             CSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred             ceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence                000 011123467999999999999999999999998654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.8e-28  Score=303.16  Aligned_cols=254  Identities=15%  Similarity=0.259  Sum_probs=214.8

Q ss_pred             ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecC--CCceEEEEEeCCCeEE
Q 001163          413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP--NKQLSVVTCGEDRVIK  490 (1134)
Q Consensus       413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~--~~~~~l~s~s~d~~i~  490 (1134)
                      ++.+|.+.|++++|+|++++|++|+.||.|+|||+.++.. .....+.+|.+.|++++|+++  ++  +|++|+.||.|+
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~   80 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL   80 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEE
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEE
Confidence            3689999999999999999999999999999999985432 233468899999999999988  77  899999999999


Q ss_pred             EEECCCCc--eeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCC--ceeeecCCCCCeeEEEECc-----
Q 001163          491 VWDAVTGT--KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG--SRVDYDAPGHSSTMMAYSA-----  561 (1134)
Q Consensus       491 iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~-----  561 (1134)
                      +||+.+++  .+..+.+|...|.+++|+++.++.++++|+.||.|++||+....  ....+..+...|.+++|+|     
T Consensus        81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~  160 (753)
T 3jro_A           81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  160 (753)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred             EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence            99999987  77888999999999999876446899999999999999998763  3445567778999999999     


Q ss_pred             --------CCCEEEEEecCCCCCeEEEEEeCCCC----eeEEEecCCCCCceEEEEEcCC---CCEEEEEeCCCeEEEEE
Q 001163          562 --------DGARLFSCGTNKEGESYLVEWNESEG----AVKRTYHGLGKRSVGVVQFDTT---KNRFLAAGDEFMIKFWD  626 (1134)
Q Consensus       562 --------~~~~l~~~~~~~~~~~~i~~wd~~~~----~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd  626 (1134)
                              +++.+++++.++    .|++||++++    .....+.+|.. .|.+++|+|+   ++++++++.||.|++||
T Consensus       161 ~~~~~~~~d~~~l~sgs~dg----~I~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd  235 (753)
T 3jro_A          161 DGEHNGTKESRKFVTGGADN----LVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT  235 (753)
T ss_dssp             ------CGGGCCEEEEETTS----CEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred             ccccccCCCCCEEEEEECCC----eEEEEeccCCcccceeeeeecCCCC-cEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence                    589999998754    4999999877    56667777776 8999999999   89999999999999999


Q ss_pred             cCCCcee---EEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163          627 MDNVNLL---ASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       627 ~~~~~~~---~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      +.+++..   .......+...|.+++|+|+|.++++++.||.|++|++..+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred             CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence            9887422   11222345678999999999999999999999999998864

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=2.3e-26  Score=264.08  Aligned_cols=279  Identities=13%  Similarity=0.090  Sum_probs=225.8

Q ss_pred             CeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEE-EEEeCCCEEEEEEc
Q 001163          369 QILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF-GVAYSKHIVHLYTY  447 (1134)
Q Consensus       369 ~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l-as~s~dg~v~iwd~  447 (1134)
                      ++++++++.|+.|++||+.+++.+..                   +.+| ..+.+++|+|+|++| ++++.|+.|++||+
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~   61 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTSNKVTAT-------------------IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDT   61 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEE-------------------EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEET
T ss_pred             CEEEEEcCCCCEEEEEECCCCeEEEE-------------------eecC-CCcceEEECCCCCEEEEECCCCCeEEEEEC
Confidence            46889999999999999999876653                   3334 458999999999987 66779999999999


Q ss_pred             cCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEE-EE
Q 001163          448 HGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFI-FS  526 (1134)
Q Consensus       448 ~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s  526 (1134)
                      .+++.+.   .+..|. .+.+++|+|+++. ++++++.|+.|++||+.+++.+..+..+ ..+.+++|+++  ++.+ ++
T Consensus        62 ~~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~d--g~~l~~~  133 (391)
T 1l0q_A           62 ATNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPD--GKKLYVT  133 (391)
T ss_dssp             TTTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTT--SSEEEEE
T ss_pred             CCCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCC--CCEEEEE
Confidence            9988665   344444 8999999999994 3456667899999999999998888755 46888998654  4655 78


Q ss_pred             ecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEE
Q 001163          527 TATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQF  606 (1134)
Q Consensus       527 ~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~  606 (1134)
                      ++.|+.|++||+.+.+....+..+ ..+..++|+|+++.++..+.   .++.|++||+.+++....+..+.  .+..++|
T Consensus       134 ~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~  207 (391)
T 1l0q_A          134 NNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVEA--APSGIAV  207 (391)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--EEEEEEE
T ss_pred             eCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecCC--CccceEE
Confidence            889999999999887766666543 46789999999998855432   24569999999998888776543  6889999


Q ss_pred             cCCCCEEEEEe---CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEE-EEEECCCcEEEEEccCCceeEEEec
Q 001163          607 DTTKNRFLAAG---DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILL-AVSTNDNGIKILANADGIRLLRTVE  682 (1134)
Q Consensus       607 ~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~  682 (1134)
                      +|+++++++++   .++.|++||+.+++.+..+..+.   .+.+++|+|+++++ ++++.|+.|++||+.++ .....+.
T Consensus       208 ~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~-~~~~~~~  283 (391)
T 1l0q_A          208 NPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN-TITATMA  283 (391)
T ss_dssp             CTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE
T ss_pred             CCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCC-cEEEEEE
Confidence            99999999988   68999999999999888887542   46889999999877 56678999999999988 6666665


Q ss_pred             cCc
Q 001163          683 SRT  685 (1134)
Q Consensus       683 ~~~  685 (1134)
                      .+.
T Consensus       284 ~~~  286 (391)
T 1l0q_A          284 VGK  286 (391)
T ss_dssp             CSS
T ss_pred             CCc
Confidence            543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=1.2e-26  Score=246.22  Aligned_cols=293  Identities=15%  Similarity=0.141  Sum_probs=209.2

Q ss_pred             EEEEEEec-CCCceEEEEEeCCCeEEEEECCCC---ceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCC
Q 001163          466 VNDLAFSY-PNKQLSVVTCGEDRVIKVWDAVTG---TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL  541 (1134)
Q Consensus       466 V~~v~~s~-~~~~~~l~s~s~d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~  541 (1134)
                      +.++-|-. ..+...+++++. ..|++|+..++   ++++++.+|..+|..+.+.++.-+-..++-+             
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-------------  107 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG-------------  107 (356)
T ss_dssp             EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC-------------
T ss_pred             EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec-------------
Confidence            55666643 344556777775 69999999999   8999999999999999987765432222111             


Q ss_pred             CceeeecCCCCCeeEEEECcC----CCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe
Q 001163          542 GSRVDYDAPGHSSTMMAYSAD----GARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG  617 (1134)
Q Consensus       542 ~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  617 (1134)
                            ..+...|.+++++||    ++.+++++.      .+.+|++.                       +++.+.+++
T Consensus       108 ------~~~~~~v~sla~spd~~~~~~~l~s~g~------~~~v~~l~-----------------------~g~lv~ss~  152 (356)
T 2w18_A          108 ------NLEIREIRALFCSSDDESEKQVLLKSGN------IKAVLGLT-----------------------KRRLVSSSG  152 (356)
T ss_dssp             ------SSSEEEEEEECC------CCEEEEEEEE------EEEEEEET-----------------------TTEEEEEES
T ss_pred             ------cccccceEEEEECCCccccccEEEeCCC------eEEEEecC-----------------------CCcEEEecc
Confidence                  123447889999999    889988763      26666532                       333333322


Q ss_pred             --CCCeEEEEEc-CCCceeEEEecCCCCCCcceEEEcC---CCcEEEEEECCCcEEEEEccCCceeEEEeccCccccccc
Q 001163          618 --DEFMIKFWDM-DNVNLLASIDADGGLQASPCIRFNK---EGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRV  691 (1134)
Q Consensus       618 --~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~~sp---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~  691 (1134)
                        .|+.|++|++ .+|+.+..+..+  ...+..++|++   ++.+|++++.|++|+|||+.++ +.++++.++..     
T Consensus       153 ~g~d~~V~~~~~s~dG~~~~s~~~~--~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~-----  224 (356)
T 2w18_A          153 TLSDQQVEVMTFAEDGGGKENQFLM--PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHIDDS-----  224 (356)
T ss_dssp             SSTTCEEEEEEECTTSCEEEEEEEC--CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEEEECCC------
T ss_pred             cCCCCcEEEEEECCCCceeeeeccC--CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEEEcCCCc-----
Confidence              5788888888 447777777766  45778899998   7799999999999999999998 56666643211     


Q ss_pred             chhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccC
Q 001163          692 ASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLP  771 (1134)
Q Consensus       692 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~  771 (1134)
                                                                                                      
T Consensus       225 --------------------------------------------------------------------------------  224 (356)
T 2w18_A          225 --------------------------------------------------------------------------------  224 (356)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEE
Q 001163          772 DNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFAL  851 (1134)
Q Consensus       772 ~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~  851 (1134)
                         +...+.+++|+|+|.++++++.+..  +                                                 
T Consensus       225 ---~v~~v~~vafSpdG~~lvs~s~~~~--~-------------------------------------------------  250 (356)
T 2w18_A          225 ---YQASVCHKAYSEMGLLFIVLSHPCA--K-------------------------------------------------  250 (356)
T ss_dssp             -----CCCEEEEEEETTEEEEEEC--------------------------------------------------------
T ss_pred             ---ceeeeEEEEECCCCCEEEEeccCCC--c-------------------------------------------------
Confidence               2235778899999998887764311  1                                                 


Q ss_pred             cCCCCeEEEee-CCeEEEEEccCCeEEEEe-----cCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccC
Q 001163          852 SKNDSYVMSAS-GGKISLFNMMTFKTMTTF-----MPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKG  925 (1134)
Q Consensus       852 s~dg~~la~~s-dg~i~lwd~~~~~~~~~~-----~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~  925 (1134)
                          ..+++|+ |++|++||..+++.+..+     .+|...+.+..+   ++.++|+|+.|++|+|||+.+++++.++.+
T Consensus       251 ----w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~g  323 (356)
T 2w18_A          251 ----ESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPP  323 (356)
T ss_dssp             -----------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECC
T ss_pred             ----ceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecC
Confidence                1356777 899999999999988765     366655544444   367999999999999999999999999999


Q ss_pred             ccCceE-EEEEeeCCCEEEEEeCCCcEEEEEC
Q 001163          926 HQKRIT-GLAFSNTLNVLVSSGADSQLCVWST  956 (1134)
Q Consensus       926 h~~~V~-~l~~s~d~~~l~s~s~Dg~i~iwd~  956 (1134)
                      |...+. .++|||||++|+||+.|++|+|||+
T Consensus       324 H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          324 VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             C--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            988765 5899999999999999999999995

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=4.4e-27  Score=264.91  Aligned_cols=295  Identities=9%  Similarity=0.112  Sum_probs=211.0

Q ss_pred             EEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEE-EE
Q 001163          581 EWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILL-AV  659 (1134)
Q Consensus       581 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l-~~  659 (1134)
                      +|++.+.+.+.....|.. .|.+++|+|++++|++|+.++ +++|+..+++.......+    .+..+++.++++.+ ++
T Consensus         3 i~s~~~~~~~~~~~~h~~-~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~   76 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSN-PVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR----HLSKVRMLHRTNYVAFV   76 (355)
T ss_dssp             ----------------CC-CCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS----CCCEEEECTTSSEEEEE
T ss_pred             cccccccCCccccccCCC-ceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC----CeEEEEEcCCCCEEEEE
Confidence            456666777776777766 899999999999999988775 789999988776665432    47788999988877 56


Q ss_pred             EECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccc
Q 001163          660 STNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDV  739 (1134)
Q Consensus       660 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~  739 (1134)
                      ++.|++|++||..++ ..+..+.                                                         
T Consensus        77 ~~~d~~v~iWd~~~~-~~~~~~~---------------------------------------------------------   98 (355)
T 3vu4_A           77 TGVKEVVHIWDDVKK-QDVSRIK---------------------------------------------------------   98 (355)
T ss_dssp             CSSTTEEEEEETTTT-EEEEEEE---------------------------------------------------------
T ss_pred             ECCccEEEEEECCCC-cEEEEEE---------------------------------------------------------
Confidence            777899999999877 3332221                                                         


Q ss_pred             ccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccC
Q 001163          740 KPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTN  819 (1134)
Q Consensus       740 ~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~  819 (1134)
                                                         +...|.++.|+++..  ++ ..++.+++|++....          
T Consensus        99 -----------------------------------~~~~v~~v~~~~~~~--~~-~~~~~i~i~d~~~~~----------  130 (355)
T 3vu4_A           99 -----------------------------------VDAPVKDLFLSREFI--VV-SYGDVISVFKFGNPW----------  130 (355)
T ss_dssp             -----------------------------------CSSCEEEEEECSSEE--EE-EETTEEEEEESSTTC----------
T ss_pred             -----------------------------------CCCceEEEEEcCCEE--EE-EEcCEEEEEECCCCc----------
Confidence                                               234678888887753  22 347889999876320          


Q ss_pred             CCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEe--e-CCeEEEEEccCCe----------------EEEEe
Q 001163          820 QAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSA--S-GGKISLFNMMTFK----------------TMTTF  880 (1134)
Q Consensus       820 ~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~--s-dg~i~lwd~~~~~----------------~~~~~  880 (1134)
                                 +.+.. +     ..+...+++++  .+++++  + +|.|++||+.+++                ++..+
T Consensus       131 -----------~~~~~-~-----~~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~  191 (355)
T 3vu4_A          131 -----------KRITD-D-----IRFGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI  191 (355)
T ss_dssp             -----------CBSSC-C-----EEEEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEE
T ss_pred             -----------eeeEE-e-----ccCCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEE
Confidence                       11110 1     11344566777  666664  4 8999999998865                27889


Q ss_pred             cCCCCCeEEEEEcCCCCcEEEEEeCCCc-EEEEEcccceEEEecc-C-ccCceEEEEEeeCCCEEEEEeCCCcEEEEECC
Q 001163          881 MPPPPAATFLAFHPQDNNIIAIGMEDSS-IQIYNVRVDEVKTKLK-G-HQKRITGLAFSNTLNVLVSSGADSQLCVWSTD  957 (1134)
Q Consensus       881 ~~~~~~v~~l~~sp~~~~~la~g~~dg~-i~iwd~~~~~~~~~l~-~-h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~  957 (1134)
                      .+|...|++++|+| ++++||+|+.|++ |+|||+.+++.+..+. + |.+.|++++|+|++++|++++.|++|++||+.
T Consensus       192 ~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~  270 (355)
T 3vu4_A          192 KAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIF  270 (355)
T ss_dssp             CCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred             EccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence            99999999999999 8999999999998 9999999999999998 5 99999999999999999999999999999998


Q ss_pred             CCccccceeee------------------ecCCCCCCCCCceEEEEcCCCCEEEEE-eeceEEEEeCCCccc
Q 001163          958 GWEKQASKFLT------------------IPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLEC 1010 (1134)
Q Consensus       958 ~~~~~~~~~~~------------------~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~iwd~~~~~~ 1010 (1134)
                      .+.......+.                  .....   ......++|++||++|+++ .||.+++|++..++.
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~  339 (355)
T 3vu4_A          271 NDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDK---HVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDE  339 (355)
T ss_dssp             CCSCCCSEETTTTEECCCCCCSSCSEEEECCCCT---TCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETT
T ss_pred             CCCCcccccccceeeccccccccceeEEEeccCC---CCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCC
Confidence            75432221110                  11111   1234779999999999995 899999999876553

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=7.8e-26  Score=259.60  Aligned_cols=328  Identities=10%  Similarity=0.107  Sum_probs=250.7

Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEE-EEecCCCcEEEEecCCCCceeeecCCCCCeeEE
Q 001163          479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFI-FSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMM  557 (1134)
Q Consensus       479 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~  557 (1134)
                      ++++++.|+.|++||+.+++.+..+..|. .+.+++|+++  +.++ ++++.|+.|++||+.+++....+..+. .+.++
T Consensus         4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~d--g~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~   79 (391)
T 1l0q_A            4 AYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPD--GTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV   79 (391)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTT--SSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred             EEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCC--CCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence            78999999999999999999999998775 4889998654  4655 788899999999998877766666544 89999


Q ss_pred             EECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEE-EEEeCCCeEEEEEcCCCceeEEE
Q 001163          558 AYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRF-LAAGDEFMIKFWDMDNVNLLASI  636 (1134)
Q Consensus       558 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~  636 (1134)
                      +|+|+++++++++.+   +..|++||+.+++.+..+..+.  .+.+++|+|+++.+ ++++.++.|++||+.+++.+..+
T Consensus        80 ~~spdg~~l~~~~~~---~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~  154 (391)
T 1l0q_A           80 AVSPDGKQVYVTNMA---SSTLSVIDTTSNTVAGTVKTGK--SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV  154 (391)
T ss_dssp             EECTTSSEEEEEETT---TTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EECCCCCEEEEEECC---CCEEEEEECCCCeEEEEEeCCC--CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            999999988776532   3469999999999988887654  67899999999987 57778999999999999988888


Q ss_pred             ecCCCCCCcceEEEcCCCcEE-EEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccC
Q 001163          637 DADGGLQASPCIRFNKEGILL-AVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTS  715 (1134)
Q Consensus       637 ~~~~~~~~v~~v~~sp~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  715 (1134)
                      ..+   ..+.+++|+|+++.+ ++++.++.|++||+.++ .....+.                                 
T Consensus       155 ~~~---~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~---------------------------------  197 (391)
T 1l0q_A          155 SVG---RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTVK---------------------------------  197 (391)
T ss_dssp             ECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE---------------------------------
T ss_pred             ecC---CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-eEEEEEe---------------------------------
Confidence            753   346899999999877 56778899999998765 1111100                                 


Q ss_pred             cCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeec
Q 001163          716 LGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALA  795 (1134)
Q Consensus       716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~  795 (1134)
                                                                                                      
T Consensus       198 --------------------------------------------------------------------------------  197 (391)
T 1l0q_A          198 --------------------------------------------------------------------------------  197 (391)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee----CCeEEEEEc
Q 001163          796 SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS----GGKISLFNM  871 (1134)
Q Consensus       796 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s----dg~i~lwd~  871 (1134)
                                                                    +...+.+++|+|+|+++++++    ++.|++||+
T Consensus       198 ----------------------------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~  231 (391)
T 1l0q_A          198 ----------------------------------------------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT  231 (391)
T ss_dssp             ----------------------------------------------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred             ----------------------------------------------cCCCccceEECCCCCEEEEEecCcCCCcEEEEEC
Confidence                                                          122345666777777666654    578999999


Q ss_pred             cCCeEEEEecCCCCCeEEEEEcCCCCcEE-EEEeCCCcEEEEEcccceEEEeccCccCceE---EEE------------E
Q 001163          872 MTFKTMTTFMPPPPAATFLAFHPQDNNII-AIGMEDSSIQIYNVRVDEVKTKLKGHQKRIT---GLA------------F  935 (1134)
Q Consensus       872 ~~~~~~~~~~~~~~~v~~l~~sp~~~~~l-a~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~---~l~------------~  935 (1134)
                      .+++.+..+..+. .+.+++|+| ++++| ++++.|+.|++||+.+++.+..+..|..+..   .+.            |
T Consensus       232 ~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~f  309 (391)
T 1l0q_A          232 GTNKITARIPVGP-DPAGIAVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADF  309 (391)
T ss_dssp             TTTEEEEEEECCS-SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCE
T ss_pred             CCCeEEEEEecCC-CccEEEEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccccccccccccc
Confidence            8888888887654 588999999 77666 6778899999999999999988877765432   122            3


Q ss_pred             eeCC----------CEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE
Q 001163          936 SNTL----------NVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA  994 (1134)
Q Consensus       936 s~d~----------~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~  994 (1134)
                      +.+.          ..+.+.+.|..+++|++..+...      ..        ......|+++|.|.+.
T Consensus       310 s~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~------~~--------~~~~~~~~~~g~y~~~  364 (391)
T 1l0q_A          310 KSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS------KK--------QNPTHTYSETGIYTVR  364 (391)
T ss_dssp             EESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE------CS--------SSCEECCSSCEEEEEE
T ss_pred             ccccccccccccceEEEEeCCCCceEEEEECCCCccc------Cc--------CCCeEEeCCCceEEEE
Confidence            3222          34666677899999999876521      10        1234679999998876

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=1.4e-26  Score=269.92  Aligned_cols=295  Identities=9%  Similarity=0.057  Sum_probs=239.8

Q ss_pred             eeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc
Q 001163          348 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS  427 (1134)
Q Consensus       348 ~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  427 (1134)
                      ..+..+.....+.+++|+|++ .++++++.|+.|++||+.+++......              ...+.+|.+.|.+++|+
T Consensus       114 ~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~i~~~d~~~g~~~~~~~--------------~~~~~~~~~~v~~~~~~  178 (433)
T 3bws_A          114 RFISRFKTGFQPKSVRFIDNT-RLAIPLLEDEGMDVLDINSGQTVRLSP--------------PEKYKKKLGFVETISIP  178 (433)
T ss_dssp             EEEEEEECSSCBCCCEESSSS-EEEEEBTTSSSEEEEETTTCCEEEECC--------------CHHHHTTCCEEEEEEEG
T ss_pred             eEEEEEcCCCCceEEEEeCCC-eEEEEeCCCCeEEEEECCCCeEeeecC--------------cccccccCCceeEEEEc
Confidence            556667767778899999954 578899999999999999987664211              11246799999999999


Q ss_pred             CCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCC
Q 001163          428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE  507 (1134)
Q Consensus       428 pd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~  507 (1134)
                      |+++++++++.|+.|++||+.+++.+.   .+..|...+.+++|+|+++. ++++++.|+.|++||+.+++.+..+..+ 
T Consensus       179 ~~~~~~~s~~~d~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~-  253 (433)
T 3bws_A          179 EHNELWVSQMQANAVHVFDLKTLAYKA---TVDLTGKWSKILLYDPIRDL-VYCSNWISEDISVIDRKTKLEIRKTDKI-  253 (433)
T ss_dssp             GGTEEEEEEGGGTEEEEEETTTCCEEE---EEECSSSSEEEEEEETTTTE-EEEEETTTTEEEEEETTTTEEEEECCCC-
T ss_pred             CCCEEEEEECCCCEEEEEECCCceEEE---EEcCCCCCeeEEEEcCCCCE-EEEEecCCCcEEEEECCCCcEEEEecCC-
Confidence            999999999999999999999987665   56689999999999999984 3456668999999999999998888765 


Q ss_pred             cCEEEEeccccCCccEEEEec--------CCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEE
Q 001163          508 SPVYSICPHHKENIQFIFSTA--------TDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYL  579 (1134)
Q Consensus       508 ~~v~~~~~~~~~~~~~l~s~s--------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i  579 (1134)
                      ..+.+++|++  ++.++++++        .|+.|++||+.+.+..... .+...+..++|+|+++.+++.+.   .++.|
T Consensus       254 ~~~~~~~~~~--~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~---~~~~v  327 (433)
T 3bws_A          254 GLPRGLLLSK--DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDM---CCSKI  327 (433)
T ss_dssp             SEEEEEEECT--TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEET---TTTEE
T ss_pred             CCceEEEEcC--CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEec---CCCEE
Confidence            4588888865  457888877        5889999999876554443 23347889999999987766542   24579


Q ss_pred             EEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeC---------------CCeEEEEEcCCCceeEEEecCCCCCC
Q 001163          580 VEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGD---------------EFMIKFWDMDNVNLLASIDADGGLQA  644 (1134)
Q Consensus       580 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~  644 (1134)
                      ++||+.+++.+..+...  ..+..++|+|+++++++++.               ||.|++||..+++.+..+..+   ..
T Consensus       328 ~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~---~~  402 (433)
T 3bws_A          328 EVYDLKEKKVQKSIPVF--DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG---NQ  402 (433)
T ss_dssp             EEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS---SS
T ss_pred             EEEECCCCcEEEEecCC--CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC---CC
Confidence            99999999988877633  36889999999999998875               579999999999998888752   36


Q ss_pred             cceEEEcCCCcEEEEEEC-CCcEEEEEccC
Q 001163          645 SPCIRFNKEGILLAVSTN-DNGIKILANAD  673 (1134)
Q Consensus       645 v~~v~~sp~~~~l~~~~~-dg~i~iw~~~~  673 (1134)
                      +.+++|+|+|++|++++. |+.|++|++..
T Consensus       403 ~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          403 PTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             CceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            889999999999988875 99999999753

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=1.2e-27  Score=273.61  Aligned_cols=308  Identities=11%  Similarity=0.074  Sum_probs=203.6

Q ss_pred             EeecCCCeeEEEE---cCCCCeEEEEEeCCCcEEEEecCCcccee-----eeceeeeeccccCc-----cccccccccCC
Q 001163          352 TLNQGSAVKSMDF---HPVQQILLVVGTNMGDVMLWEVGSRERIA-----VKSFKVWELGACSM-----PLQASLSSDYT  418 (1134)
Q Consensus       352 ~~~h~~~V~~v~f---sp~g~~lla~gs~dg~v~iwd~~~~~~~~-----~~~~~~~~~~~~~~-----~~~~~~~~~h~  418 (1134)
                      .+.-+....++.|   +|++..++++|. |+.|.+|+........     ...+..|.......     +........|.
T Consensus        11 ~lpl~~~p~~~~w~~~~~~~~~l~a~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (393)
T 4gq1_A           11 QLPLNVRPYTTTWCSQSPSCSNLLAIGH-DTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHD   89 (393)
T ss_dssp             ECCTTCCEEEEEECTTSGGGTTEEEEEE-SSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC---
T ss_pred             EecCCCCCeEEEEeCCCCCCCCEEEEEC-CCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccC
Confidence            3444556667777   456666776664 7789999874332111     11111222111000     00111234455


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceee--eeeeeecCCCCEEEEEEec--------CCCceEEEEEeCCCe
Q 001163          419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELR--NHLEIEAHVGSVNDLAFSY--------PNKQLSVVTCGEDRV  488 (1134)
Q Consensus       419 ~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~--~~~~l~~h~~~V~~v~~s~--------~~~~~~l~s~s~d~~  488 (1134)
                      ..+....+++++.+||+|+.|++|+|||+.+++...  ....+.+|.+.|++++|+|        |++  +|+|||.|++
T Consensus        90 ~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~t  167 (393)
T 4gq1_A           90 GDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCT  167 (393)
T ss_dssp             -------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSE
T ss_pred             CCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCe
Confidence            666666777788999999999999999999987543  2234789999999999998        677  8999999999


Q ss_pred             EEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeee---------------------
Q 001163          489 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY---------------------  547 (1134)
Q Consensus       489 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~---------------------  547 (1134)
                      |+|||+.++.++..+.+|..+|.+++|+|.. ..+|++++.|++|++||+.+.......                     
T Consensus       168 v~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~  246 (393)
T 4gq1_A          168 LIIWRLTDEGPILAGYPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN  246 (393)
T ss_dssp             EEEEEEETTEEEEEEEECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred             EEEEECCCCceeeeecCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence            9999999999888888899999999997643 258999999999999999876543221                     


Q ss_pred             ----cCCCCCeeEEEEC-cCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEE------------------E
Q 001163          548 ----DAPGHSSTMMAYS-ADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGV------------------V  604 (1134)
Q Consensus       548 ----~~~~~~v~~~~~s-~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~------------------~  604 (1134)
                          ..+...+.++.|+ ++++.+++++.+    ..+++||+.+++....+..+.. .+..                  .
T Consensus       247 ~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d----~~i~vwd~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  321 (393)
T 4gq1_A          247 TCHSSGIASSLANVRWIGSDGSGILAMCKS----GAWLRWNLFANNDYNEISDSTM-KLGPKNLLPNVQGISLFPSLLGA  321 (393)
T ss_dssp             -----CCSSSCSEEEEETTTTCEEEEECTT----SEEEEEEC--------------------CCSCSEEEECSSCCSSCC
T ss_pred             eeecccccccceeeeeecCCCCEEEEEeCC----CCEEEEECccCCCCceEeeecC-ccccEEEccccccccccCcceeE
Confidence                2344567888886 899999998764    4699999988876665554432 2222                  2


Q ss_pred             EEcC--CCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEc
Q 001163          605 QFDT--TKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN  671 (1134)
Q Consensus       605 ~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~  671 (1134)
                      .++|  ++.++++|+.||.|++||..+++.......+  ...|.+++|+|+|++||+++++| +.+|.+
T Consensus       322 ~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~--~~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          322 CPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQL--GMPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             EECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEEC--SSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             EEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCC--CCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence            3333  2335666779999999999999988877755  55899999999999999998776 555554

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=7.2e-27  Score=271.10  Aligned_cols=252  Identities=17%  Similarity=0.278  Sum_probs=210.9

Q ss_pred             cccCCCCEEEEEEcCC-CCEEEEEeCCCEEEEEEccCC-------ceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeC
Q 001163          414 SSDYTASVNRVMWSPD-GTLFGVAYSKHIVHLYTYHGG-------DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE  485 (1134)
Q Consensus       414 ~~~h~~~V~~l~~spd-~~~las~s~dg~v~iwd~~~~-------~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~  485 (1134)
                      ..+|.+.|++++|+|+ +.+||+++.||.|++||+.+.       ........+.+|...|.+++|+|++.. +|++|+.
T Consensus       124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~~  202 (430)
T 2xyi_A          124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSASD  202 (430)
T ss_dssp             EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEECT
T ss_pred             EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEEeC
Confidence            5679999999999997 789999999999999999861       112233468899999999999999876 6999999


Q ss_pred             CCeEEEEECCCCce-------eEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCC---CceeeecCCCCCee
Q 001163          486 DRVIKVWDAVTGTK-------QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL---GSRVDYDAPGHSST  555 (1134)
Q Consensus       486 d~~i~iwd~~~~~~-------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~---~~~~~~~~~~~~v~  555 (1134)
                      ||.|++||+.++..       ...+.+|...|.+++|++. ++.++++++.|+.|++||++..   .....+..+...|.
T Consensus       203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  281 (430)
T 2xyi_A          203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN  281 (430)
T ss_dssp             TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred             CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence            99999999987432       4567789999999999874 3479999999999999999976   45556667888999


Q ss_pred             EEEECcCCC-EEEEEecCCCCCeEEEEEeCCC-CeeEEEecCCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEEcCCC--
Q 001163          556 MMAYSADGA-RLFSCGTNKEGESYLVEWNESE-GAVKRTYHGLGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNV--  630 (1134)
Q Consensus       556 ~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~--  630 (1134)
                      +++|+|+++ .+++++.+    +.|++||+++ +..+..+..|.. .+.+++|+|++. .|++++.||.|++||+...  
T Consensus       282 ~i~~~p~~~~~l~tg~~d----g~v~vwd~~~~~~~~~~~~~h~~-~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~  356 (430)
T 2xyi_A          282 CLSFNPYSEFILATGSAD----KTVALWDLRNLKLKLHSFESHKD-EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE  356 (430)
T ss_dssp             EEEECSSCTTEEEEEETT----SEEEEEETTCTTSCSEEEECCSS-CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred             EEEeCCCCCCEEEEEeCC----CeEEEEeCCCCCCCeEEeecCCC-CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence            999999998 57777654    4699999998 567888888876 899999999985 6889999999999999872  


Q ss_pred             ------------ceeEEEecCCCCCCcceEEEcCCCc-EEEEEECCCcEEEEEccCC
Q 001163          631 ------------NLLASIDADGGLQASPCIRFNKEGI-LLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       631 ------------~~~~~~~~~~~~~~v~~v~~sp~~~-~l~~~~~dg~i~iw~~~~~  674 (1134)
                                  +.+....  ++...|.+++|+|++. ++++++.||.|++|++...
T Consensus       357 ~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          357 EQSTEDAEDGPPELLFIHG--GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             CCCHHHHHHCCTTEEEECC--CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             ccCccccccCCcceEEEcC--CCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence                        3444444  4467899999999998 9999999999999998754

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.2e-27  Score=295.04  Aligned_cols=260  Identities=10%  Similarity=0.091  Sum_probs=216.2

Q ss_pred             CCCCCeeEEEEcCCCCeEEEee-CCeEEEEEcc--CCeEEEEecCCCCCeEEEEEcCCC--CcEEEEEeCCCcEEEEEcc
Q 001163          841 NPEDAVPCFALSKNDSYVMSAS-GGKISLFNMM--TFKTMTTFMPPPPAATFLAFHPQD--NNIIAIGMEDSSIQIYNVR  915 (1134)
Q Consensus       841 ~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~--~~~~~~~~~~~~~~v~~l~~sp~~--~~~la~g~~dg~i~iwd~~  915 (1134)
                      +|.+.|++++|+|+|++|++++ ||+|++||+.  +++.+..+.+|.+.|++++|+| +  +++|++|+.||.|++||+.
T Consensus         7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~vwd~~   85 (753)
T 3jro_A            7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIWKEE   85 (753)
T ss_dssp             -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEEEEEEE
T ss_pred             cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEEEEECC
Confidence            3999999999999999999998 9999999998  6678888999999999999998 6  8999999999999999999


Q ss_pred             cce--EEEeccCccCceEEEEEeeC--CCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcC----
Q 001163          916 VDE--VKTKLKGHQKRITGLAFSNT--LNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHL----  987 (1134)
Q Consensus       916 ~~~--~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~----  987 (1134)
                      +++  .+..+.+|...|++++|+|+  ++++++++.||.|++||+.++........   .++.   ..+.+++|+|    
T Consensus        86 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~---~~~~---~~v~~l~~~p~~~~  159 (753)
T 3jro_A           86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII---DAHA---IGVNSASWAPATIE  159 (753)
T ss_dssp             TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEE---ECCS---SCEEEEEECCCC--
T ss_pred             CCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEe---ecCC---CceEEEEecCcccc
Confidence            987  77888999999999999999  99999999999999999988643322222   2333   4699999999    


Q ss_pred             ---------CCCEEEE-EeeceEEEEeCCCccc----ceeeccCCCccCEEEEEEccC---CCEEEEEecCCcEEEeecC
Q 001163          988 ---------DQTHLLA-VHETQIAIYEAPKLEC----LKQFVPREASGPITHATYSCD---SQSIYVAFEEGSVGVLTAS 1050 (1134)
Q Consensus       988 ---------dg~~l~~-~~d~~i~iwd~~~~~~----~~~~~~~~h~~~v~~~~~s~d---g~~l~s~s~Dg~i~vwd~~ 1050 (1134)
                               ++.++++ +.||.|++||+.++..    ...+  .+|...|++++|+|+   +++|++++.||+|++||+.
T Consensus       160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~  237 (753)
T 3jro_A          160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL--EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD  237 (753)
T ss_dssp             -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEE--CCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred             cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeee--cCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence                     5888888 5789999999987743    3334  378999999999999   9999999999999999999


Q ss_pred             CCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCCCCCCccCCCCCC
Q 001163         1051 TLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGRWGTSPPNE 1115 (1134)
Q Consensus      1051 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~~~~~~~~~~~ 1115 (1134)
                      ++........  ....+|...|+.+  +|+| ++++|++++.||.|++|++... ++|.......
T Consensus       238 ~~~~~~~~~~--~~~~~~~~~v~~l--~~sp-dg~~l~s~s~Dg~I~vwd~~~~-~~~~~~~~~~  296 (753)
T 3jro_A          238 NEQGPWKKTL--LKEEKFPDVLWRA--SWSL-SGNVLALSGGDNKVTLWKENLE-GKWEPAGEVH  296 (753)
T ss_dssp             SSSSCCBCCB--SSSSCCSSCCCCE--EECT-TTCCEEEECSSSCEECCBCCSS-SCCBCCCCBC
T ss_pred             CCCCcceeEE--eccCCCCCceEEE--EEcC-CCCEEEEEcCCCEEEEEecCCC-CCcccccccc
Confidence            8753222111  1123477888877  7889 7899999999999999999854 4566554333

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.3e-27  Score=268.52  Aligned_cols=198  Identities=11%  Similarity=0.110  Sum_probs=158.8

Q ss_pred             CCCCeeEEEEcC--CCCeEEEee-CCeEEEEEccCCeEEEEecC-CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccc
Q 001163          842 PEDAVPCFALSK--NDSYVMSAS-GGKISLFNMMTFKTMTTFMP-PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD  917 (1134)
Q Consensus       842 h~~~v~~v~~s~--dg~~la~~s-dg~i~lwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~  917 (1134)
                      |...|.+++|+|  +++++++++ ||+|++||+.+++.+..... +...+++++|+| ++.+||+|+.||.|++||+.++
T Consensus       124 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~  202 (343)
T 3lrv_A          124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSP  202 (343)
T ss_dssp             CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCT
T ss_pred             CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCC
Confidence            677899999999  999999998 99999999999998777644 455799999999 8999999999999999999999


Q ss_pred             eEE-EeccC-ccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCc--eEEEEcCCCCEEE
Q 001163          918 EVK-TKLKG-HQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALAD--TRVQFHLDQTHLL  993 (1134)
Q Consensus       918 ~~~-~~l~~-h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v--~~l~fs~dg~~l~  993 (1134)
                      +.+ ..+.+ |.++|++++|+|++.+|++++. ++|++||+.+++...  .+.....+.   ..+  .+++|+|+|++|+
T Consensus       203 ~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~g~~l~  276 (343)
T 3lrv_A          203 DQASSRFPVDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTL--AYPTYTIPE---FKTGTVTYDIDDSGKNMI  276 (343)
T ss_dssp             TSCCEECCCCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCB--SSCCCBC--------CCEEEEECTTSSEEE
T ss_pred             CCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcce--eeccccccc---ccccceEEEECCCCCEEE
Confidence            877 78888 9999999999999999999994 599999998865322  111111111   112  4799999999999


Q ss_pred             EE-e-eceEEEEeCCCcccceeeccCCCccCEEEEEEcc---CCCEEEEEecCCcEEEeecCCC
Q 001163          994 AV-H-ETQIAIYEAPKLECLKQFVPREASGPITHATYSC---DSQSIYVAFEEGSVGVLTASTL 1052 (1134)
Q Consensus       994 ~~-~-d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~---dg~~l~s~s~Dg~i~vwd~~~~ 1052 (1134)
                      ++ . |+.+++|++.+.......      ..+..++|++   +++.|++++.|+.+.++-....
T Consensus       277 ~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~  334 (343)
T 3lrv_A          277 AYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDVVCGDGGIAAILKTND  334 (343)
T ss_dssp             EEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEEEEETTEEEEEEECSS
T ss_pred             EecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEEEecCCceEEEEecCC
Confidence            94 4 899999999765533222      5678888998   9999999999999998865443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.2e-26  Score=269.02  Aligned_cols=242  Identities=13%  Similarity=0.081  Sum_probs=202.6

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeee--------------------------------------
Q 001163          419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIE--------------------------------------  460 (1134)
Q Consensus       419 ~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~--------------------------------------  460 (1134)
                      .++.+++|+|||++|+++ .++.|++||+.+|+.......+.                                      
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            488999999999976666 57789999999998222111222                                      


Q ss_pred             ----------------cCCCCEEEEEEecCCCceE-EEEEeCCCeEEEEECC--CCceeEEec--CCCcCEEEEeccccC
Q 001163          461 ----------------AHVGSVNDLAFSYPNKQLS-VVTCGEDRVIKVWDAV--TGTKQYIFE--GHESPVYSICPHHKE  519 (1134)
Q Consensus       461 ----------------~h~~~V~~v~~s~~~~~~~-l~s~s~d~~i~iwd~~--~~~~~~~~~--~h~~~v~~~~~~~~~  519 (1134)
                                      +|.+.|++++|+|+++  + +++++.|+.|++||+.  +++.+..+.  .|...|.+++|++  
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp--  159 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDES--RLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE--  159 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSS--EEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT--
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCC--EEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC--
Confidence                            3455799999999999  5 4899999999999999  888888886  5678999999965  


Q ss_pred             CccEEEEecCCCcEEEEecCCCCcee----eecCCCCCeeEEEECcC---CCEEEEEecCCCCCeEEEEEeCCCCeeEEE
Q 001163          520 NIQFIFSTATDGKIKAWLYDNLGSRV----DYDAPGHSSTMMAYSAD---GARLFSCGTNKEGESYLVEWNESEGAVKRT  592 (1134)
Q Consensus       520 ~~~~l~s~s~dg~i~vwd~~~~~~~~----~~~~~~~~v~~~~~s~~---~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~  592 (1134)
                      ++.+|++++.||.|++|++.......    .+..|...|.+++|+|+   +++|++++.++    .|++||+.+++.+..
T Consensus       160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~----~i~vwd~~~~~~~~~  235 (450)
T 2vdu_B          160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDE----HIKISHYPQCFIVDK  235 (450)
T ss_dssp             TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTS----CEEEEEESCTTCEEE
T ss_pred             CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCC----cEEEEECCCCceeee
Confidence            45899999999999999998766543    55667789999999999   99999998654    599999999998887


Q ss_pred             ec-CCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecC-----------------------CCCCCcceE
Q 001163          593 YH-GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD-----------------------GGLQASPCI  648 (1134)
Q Consensus       593 ~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------------------~~~~~v~~v  648 (1134)
                      +. +|.. .|.+++|+ ++++|++++.|+.|++||+.+++.+..+..+                       .....|.++
T Consensus       236 ~~~~h~~-~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  313 (450)
T 2vdu_B          236 WLFGHKH-FVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKI  313 (450)
T ss_dssp             ECCCCSS-CEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEE
T ss_pred             eecCCCC-ceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEE
Confidence            44 6655 89999999 9999999999999999999999988887632                       123468899


Q ss_pred             EEcCCCcEEEEEE-CCCcEEEEEc
Q 001163          649 RFNKEGILLAVST-NDNGIKILAN  671 (1134)
Q Consensus       649 ~~sp~~~~l~~~~-~dg~i~iw~~  671 (1134)
                      +|+|+++++++++ .++.|++|++
T Consensus       314 ~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          314 IKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             EECSSSSEEEEEETTCSEEEEEEE
T ss_pred             EEeCCCCEEEEEECCCCeEEEEEe
Confidence            9999999999999 8999999998

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=6.8e-27  Score=262.63  Aligned_cols=270  Identities=8%  Similarity=0.038  Sum_probs=212.6

Q ss_pred             EEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEE
Q 001163          363 DFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIV  442 (1134)
Q Consensus       363 ~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v  442 (1134)
                      .+.+++. ++++|+.||+|++||+.+++.+...                   .  ...|.+++|+|+   +++++.|++|
T Consensus        43 ~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~~-------------------~--~~~v~~~~~~~~---~~s~s~D~~i   97 (343)
T 3lrv_A           43 SMYYDKW-VCMCRCEDGALHFTQLKDSKTITTI-------------------T--TPNPRTGGEHPA---IISRGPCNRL   97 (343)
T ss_dssp             SSSEEEE-EEEEEEETTEEEEEEESSSSCEEEE-------------------E--EECCCTTCCCCS---EEEECSTTEE
T ss_pred             hhcCCCC-EEEEECCCCcEEEEECCCCcEEEEE-------------------e--cCCceeeeeCCc---eEEecCCCeE
Confidence            3445666 6799999999999999999876531                   1  357778889988   9999999999


Q ss_pred             EEEEcc---------CCceeeeeeeeecCCCCEEEEEEec--CCCceEEEEEeCCCeEEEEECCCCceeEEec-CCCcCE
Q 001163          443 HLYTYH---------GGDELRNHLEIEAHVGSVNDLAFSY--PNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE-GHESPV  510 (1134)
Q Consensus       443 ~iwd~~---------~~~~~~~~~~l~~h~~~V~~v~~s~--~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~h~~~v  510 (1134)
                      ++|+..         +++.+..  ...+|.+.|.+++|+|  +++  ++++++.|++|++||+.+++.+..+. .|...|
T Consensus        98 ~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i  173 (343)
T 3lrv_A           98 LLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEY  173 (343)
T ss_dssp             EEEETTTEEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSCCC
T ss_pred             EEEEccCceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCCce
Confidence            999765         3332321  1236778999999999  998  89999999999999999999977664 456689


Q ss_pred             EEEeccccCCccEEEEecCCCcEEEEecCCCCce-eeecC-CCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCe
Q 001163          511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR-VDYDA-PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA  588 (1134)
Q Consensus       511 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~  588 (1134)
                      .+++|++  ++.+|++|+.||.|++||+++.... ..+.. |...|.+++|+|++.+|++++.+     .|++||+++++
T Consensus       174 ~~~~~~p--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~-----~v~iwd~~~~~  246 (343)
T 3lrv_A          174 SSGVLHK--DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQ-----TVVCFDLRKDV  246 (343)
T ss_dssp             CEEEECT--TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESS-----BEEEEETTSST
T ss_pred             EEEEECC--CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCC-----eEEEEEcCCCC
Confidence            9999965  5589999999999999999988877 66777 88899999999999999999832     59999999987


Q ss_pred             eEEEecCCCC--Cce--EEEEEcCCCCEEEEEeC-CCeEEEEEcCCCceeEEEecCCCCCCcceEEEcC---CCcEEEEE
Q 001163          589 VKRTYHGLGK--RSV--GVVQFDTTKNRFLAAGD-EFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK---EGILLAVS  660 (1134)
Q Consensus       589 ~~~~~~~~~~--~~v--~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp---~~~~l~~~  660 (1134)
                      .+..+..+..  ..+  .+++|+|++++|++++. |+.|++|++.+.......      ..+..++|.+   +...++++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~  320 (343)
T 3lrv_A          247 GTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDVV  320 (343)
T ss_dssp             TCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEEE
T ss_pred             cceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEEE
Confidence            7655543111  123  36999999999999997 999999999776544333      2456778888   88899999


Q ss_pred             ECCCcEEEEEccCC
Q 001163          661 TNDNGIKILANADG  674 (1134)
Q Consensus       661 ~~dg~i~iw~~~~~  674 (1134)
                      +.||.+.++-....
T Consensus       321 ~~d~~~~~~~~~~~  334 (343)
T 3lrv_A          321 CGDGGIAAILKTND  334 (343)
T ss_dssp             EETTEEEEEEECSS
T ss_pred             ecCCceEEEEecCC
Confidence            99999998865443

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=1.4e-24  Score=257.05  Aligned_cols=276  Identities=13%  Similarity=0.123  Sum_probs=215.7

Q ss_pred             EEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEE
Q 001163          363 DFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIV  442 (1134)
Q Consensus       363 ~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v  442 (1134)
                      +|+|++. ++++++.|++|.+||..+++.+...                  -.++.  +.+++|||||++|++++.|++|
T Consensus       144 ~~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~i------------------~~g~~--~~~v~~spdg~~l~v~~~d~~V  202 (543)
T 1nir_A          144 DLDLPNL-FSVTLRDAGQIALVDGDSKKIVKVI------------------DTGYA--VHISRMSASGRYLLVIGRDARI  202 (543)
T ss_dssp             CCCGGGE-EEEEEGGGTEEEEEETTTCCEEEEE------------------ECSTT--EEEEEECTTSCEEEEEETTSEE
T ss_pred             ccCCCCE-EEEEEcCCCeEEEEECCCceEEEEE------------------ecCcc--cceEEECCCCCEEEEECCCCeE
Confidence            3788886 7789999999999999999876531                  12343  8999999999999999999999


Q ss_pred             EEEEc--cCCceeeeeeeeecCCCCEEEEEEec----CCCceEEEEEe-CCCeEEEEECCCCceeEEecCC---------
Q 001163          443 HLYTY--HGGDELRNHLEIEAHVGSVNDLAFSY----PNKQLSVVTCG-EDRVIKVWDAVTGTKQYIFEGH---------  506 (1134)
Q Consensus       443 ~iwd~--~~~~~~~~~~~l~~h~~~V~~v~~s~----~~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~h---------  506 (1134)
                      .+||+  .+++.+.   .+. +...+..++|+|    ||+  ++++++ .+++|.+||..+++++.++..+         
T Consensus       203 ~v~D~~~~t~~~~~---~i~-~g~~p~~va~sp~~~~dg~--~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~  276 (543)
T 1nir_A          203 DMIDLWAKEPTKVA---EIK-IGIEARSVESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTY  276 (543)
T ss_dssp             EEEETTSSSCEEEE---EEE-CCSEEEEEEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCE
T ss_pred             EEEECcCCCCcEEE---EEe-cCCCcceEEeCCCcCCCCC--EEEEEEccCCeEEEEeccccccceeecccCcccCcccc
Confidence            99999  7777655   454 445689999999    999  666666 5899999999999999888652         


Q ss_pred             --CcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCcee--eecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEE
Q 001163          507 --ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV--DYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEW  582 (1134)
Q Consensus       507 --~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w  582 (1134)
                        ...+.++.++++.. .++++...++.|.+||+.+.+...  .+ .....+..++|+|+|+++++++..   +..|.+|
T Consensus       277 ~~~~~v~~i~~s~~~~-~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~---~~~v~v~  351 (543)
T 1nir_A          277 HPEPRVAAIIASHEHP-EFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANN---SNKVAVI  351 (543)
T ss_dssp             ESCCCEEEEEECSSSS-EEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGG---GTEEEEE
T ss_pred             ccCCceEEEEECCCCC-EEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecC---CCeEEEE
Confidence              23688888876443 678888999999999998765433  22 234567889999999988776532   3469999


Q ss_pred             eCCCCeeEEEecC----CCCCceEEEEEcCC-CCEEEEEe-CCCeEEEEEcCC-------CceeEEEecCCCCCCcceEE
Q 001163          583 NESEGAVKRTYHG----LGKRSVGVVQFDTT-KNRFLAAG-DEFMIKFWDMDN-------VNLLASIDADGGLQASPCIR  649 (1134)
Q Consensus       583 d~~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~~~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~v~  649 (1134)
                      |..+++++..+..    |.. ....+ ++|+ +..++++. .|++|.+||..+       .+.+..+..++  ..+..++
T Consensus       352 D~~tg~l~~~i~~g~~ph~g-~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g--~~~~~v~  427 (543)
T 1nir_A          352 DSKDRRLSALVDVGKTPHPG-RGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG--GGSLFIK  427 (543)
T ss_dssp             ETTTTEEEEEEECSSSBCCT-TCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC--SCCCCEE
T ss_pred             ECCCCeEEEeeccCCCCCCC-CCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCC--CCceEEE
Confidence            9999999988875    322 22222 4677 55555554 689999999998       88999998764  4678899


Q ss_pred             EcCCCcEEEEEE-------CCCcEEEEEccCC
Q 001163          650 FNKEGILLAVST-------NDNGIKILANADG  674 (1134)
Q Consensus       650 ~sp~~~~l~~~~-------~dg~i~iw~~~~~  674 (1134)
                      ++|++++|++++       .+++|.+||+.++
T Consensus       428 ~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~  459 (543)
T 1nir_A          428 THPKSSHLYVDTTFNPDARISQSVAVFDLKNL  459 (543)
T ss_dssp             CCTTCCEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred             cCCCCCcEEEecCCCCCcccCceEEEEECCCC
Confidence            999999999987       2679999998876

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.95  E-value=1.7e-26  Score=264.11  Aligned_cols=247  Identities=9%  Similarity=-0.024  Sum_probs=174.8

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC------
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP------  428 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp------  428 (1134)
                      |...+....+++++. ++|+|+.|++|+|||..+++......+              ..+.||.+.|++++|+|      
T Consensus        88 ~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~~--------------~~~~gH~~~v~~v~~~p~~~~~~  152 (393)
T 4gq1_A           88 HDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHVL--------------GGKSGHHNFVNDIDIADVYSADN  152 (393)
T ss_dssp             ---------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEEE--------------CTTTSCSSCEEEEEEEEEECTTC
T ss_pred             cCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeeee--------------cccCCCCCceEEEEEcccccccc
Confidence            444444455555665 779999999999999998875442111              23789999999999998      


Q ss_pred             --CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEE----
Q 001163          429 --DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI----  502 (1134)
Q Consensus       429 --d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~----  502 (1134)
                        |+++||+|+.|++|+|||+.++....   .+.+|...|.+++|+|++.. +|++++.|++|++||+.+++....    
T Consensus       153 ~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~~~~~~  228 (393)
T 4gq1_A          153 RLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAEENSQT  228 (393)
T ss_dssp             SEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC--------
T ss_pred             CCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCccccccccc
Confidence              89999999999999999999877554   56779999999999998865 699999999999999998765432    


Q ss_pred             ---------------------ecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeE-----
Q 001163          503 ---------------------FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTM-----  556 (1134)
Q Consensus       503 ---------------------~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~-----  556 (1134)
                                           ..+|...|.++.|. .+++..|++++.|+++++||+........+..+...+..     
T Consensus       229 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~-~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~  307 (393)
T 4gq1_A          229 ELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWI-GSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLP  307 (393)
T ss_dssp             --CSCCCSEEEESGGGC------CCSSSCSEEEEE-TTTTCEEEEECTTSEEEEEEC-------------------CCSC
T ss_pred             CCcccceEEecccccceeeeecccccccceeeeee-cCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcc
Confidence                                 23577788888875 356789999999999999999766544443333222222     


Q ss_pred             -------------EEEC-cCCCE-EEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCe
Q 001163          557 -------------MAYS-ADGAR-LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFM  621 (1134)
Q Consensus       557 -------------~~~s-~~~~~-l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  621 (1134)
                                   ..++ +.+.. +++++.    ++.|++||..+++....+..+.. .|.+++|+|+|++|++++++| 
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~----Dg~V~lwd~~~~~~~~~~~~~~~-~V~svafspdG~~LA~as~~G-  381 (393)
T 4gq1_A          308 NVQGISLFPSLLGACPHPRYMDYFATAHSQ----HGLIQLINTYEKDSNSIPIQLGM-PIVDFCWHQDGSHLAIATEGS-  381 (393)
T ss_dssp             SEEEECSSCCSSCCEECSSCTTEEEEEETT----TTEEEEEETTCTTCCEEEEECSS-CEEEEEECTTSSEEEEEESSE-
T ss_pred             ccccccccCcceeEEEccCCCCEEEEEECC----CCEEEEEECCCCcEEEEecCCCC-cEEEEEEcCCCCEEEEEeCCC-
Confidence                         2233 33344 444443    45699999999998888888776 899999999999999998766 


Q ss_pred             EEEEEc
Q 001163          622 IKFWDM  627 (1134)
Q Consensus       622 i~iwd~  627 (1134)
                      +.+|.+
T Consensus       382 v~lvrL  387 (393)
T 4gq1_A          382 VLLTRL  387 (393)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            556654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.94  E-value=3.9e-25  Score=261.72  Aligned_cols=340  Identities=11%  Similarity=0.111  Sum_probs=255.3

Q ss_pred             ECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEc--CCCceeEEE
Q 001163          559 YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDM--DNVNLLASI  636 (1134)
Q Consensus       559 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~  636 (1134)
                      ++|++..+++++.    ++.|.+||..+++++.++....  .+..++|+|+++++++++.|+.|++||+  .+++.+..+
T Consensus       145 ~~p~~~~~vs~~~----d~~V~v~D~~t~~~~~~i~~g~--~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i  218 (543)
T 1nir_A          145 LDLPNLFSVTLRD----AGQIALVDGDSKKIVKVIDTGY--AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI  218 (543)
T ss_dssp             CCGGGEEEEEEGG----GTEEEEEETTTCCEEEEEECST--TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred             cCCCCEEEEEEcC----CCeEEEEECCCceEEEEEecCc--ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE
Confidence            7888887777654    3469999999999999988544  3788999999999999999999999999  888888888


Q ss_pred             ecCCCCCCcceEEEcC----CCcEEEEEEC-CCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccc
Q 001163          637 DADGGLQASPCIRFNK----EGILLAVSTN-DNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANAN  711 (1134)
Q Consensus       637 ~~~~~~~~v~~v~~sp----~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  711 (1134)
                      ...   ..+..++|+|    +|+++++++. +++|.+||..++ +.++.+..+.....                      
T Consensus       219 ~~g---~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~-~~~~~i~~~g~~~~----------------------  272 (543)
T 1nir_A          219 KIG---IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL-EPKQIVSTRGMTVD----------------------  272 (543)
T ss_dssp             ECC---SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC-CEEEEEECCEECSS----------------------
T ss_pred             ecC---CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc-ccceeecccCcccC----------------------
Confidence            742   3568999999    9999998884 899999998877 44444432110000                      


Q ss_pred             cccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccc-cccEEEEEEecCCce
Q 001163          712 VGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLT-AMRVSRLIYTNSGLA  790 (1134)
Q Consensus       712 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~-~~~i~~l~~spdg~~  790 (1134)
                                                                         ..        ..| ...+.++.++|++..
T Consensus       273 ---------------------------------------------------~~--------~~~~~~~v~~i~~s~~~~~  293 (543)
T 1nir_A          273 ---------------------------------------------------TQ--------TYHPEPRVAAIIASHEHPE  293 (543)
T ss_dssp             ---------------------------------------------------SC--------CEESCCCEEEEEECSSSSE
T ss_pred             ---------------------------------------------------cc--------ccccCCceEEEEECCCCCE
Confidence                                                               00        002 236889999997765


Q ss_pred             -eeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee--CCeEE
Q 001163          791 -ILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS--GGKIS  867 (1134)
Q Consensus       791 -l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s--dg~i~  867 (1134)
                       +++...++.|.+|++.....                   -....  +   .+...+..++|+|||+++++++  +++|.
T Consensus       294 ~~vs~~~~g~i~vvd~~~~~~-------------------l~~~~--i---~~~~~~~~~~~spdg~~l~va~~~~~~v~  349 (543)
T 1nir_A          294 FIVNVKETGKVLLVNYKDIDN-------------------LTVTS--I---GAAPFLHDGGWDSSHRYFMTAANNSNKVA  349 (543)
T ss_dssp             EEEEETTTTEEEEEECTTSSS-------------------CEEEE--E---ECCSSCCCEEECTTSCEEEEEEGGGTEEE
T ss_pred             EEEEECCCCeEEEEEecCCCc-------------------ceeEE--e---ccCcCccCceECCCCCEEEEEecCCCeEE
Confidence             45556689999998763210                   00000  1   1345577899999999877664  78999


Q ss_pred             EEEccCCeEEEEecC----CCCCeEEEEEcCCCCcEEEEEe-CCCcEEEEEccc-------ceEEEeccCccCceEEEEE
Q 001163          868 LFNMMTFKTMTTFMP----PPPAATFLAFHPQDNNIIAIGM-EDSSIQIYNVRV-------DEVKTKLKGHQKRITGLAF  935 (1134)
Q Consensus       868 lwd~~~~~~~~~~~~----~~~~v~~l~~sp~~~~~la~g~-~dg~i~iwd~~~-------~~~~~~l~~h~~~V~~l~~  935 (1134)
                      +||+.+++++..+..    |.+....+ ++|+++.+++++. .|++|.+||+.+       +++++++.+|.+.+..++|
T Consensus       350 v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~  428 (543)
T 1nir_A          350 VIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKT  428 (543)
T ss_dssp             EEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEEC
T ss_pred             EEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEc
Confidence            999999999988874    54444443 5774577788875 689999999998       8999999999998999999


Q ss_pred             eeCCCEEEEEe-------CCCcEEEEECCCCccccceeeeecC--CCCCCCCCceEEEEcCCCCEEEEE------eeceE
Q 001163          936 SNTLNVLVSSG-------ADSQLCVWSTDGWEKQASKFLTIPN--GRTASALADTRVQFHLDQTHLLAV------HETQI 1000 (1134)
Q Consensus       936 s~d~~~l~s~s-------~Dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~v~~l~fs~dg~~l~~~------~d~~i 1000 (1134)
                      +|++++|++++       .+++|.+||+.+++... ..+.+..  +.......+..+.|+|||+.|+++      .++.|
T Consensus       429 ~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i  507 (543)
T 1nir_A          429 HPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKY-QVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSAL  507 (543)
T ss_dssp             CTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCC-EEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEE
T ss_pred             CCCCCcEEEecCCCCCcccCceEEEEECCCCCCCe-EEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeE
Confidence            99999999987       27799999999977431 2222210  000111458899999999999975      26899


Q ss_pred             EEEeCCCcccceeec
Q 001163         1001 AIYEAPKLECLKQFV 1015 (1134)
Q Consensus      1001 ~iwd~~~~~~~~~~~ 1015 (1134)
                      .|||.++++++..+.
T Consensus       508 ~v~D~~t~~~~~~i~  522 (543)
T 1nir_A          508 VVVDDKTLKLKAVVK  522 (543)
T ss_dssp             EEEETTTTEEEEEEC
T ss_pred             EEEECCCceEEEeec
Confidence            999999999988876

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=6e-24  Score=244.22  Aligned_cols=284  Identities=10%  Similarity=0.041  Sum_probs=220.1

Q ss_pred             CCeeEEEEcCCCCeEEEEEe----CCC----cEEEEec--CCccceeeeceeeeeccccCccccccccccCCCCEEEEEE
Q 001163          357 SAVKSMDFHPVQQILLVVGT----NMG----DVMLWEV--GSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW  426 (1134)
Q Consensus       357 ~~V~~v~fsp~g~~lla~gs----~dg----~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  426 (1134)
                      ..|...+|++.|..++++|+    .||    .|+|||+  .+++.+....                 +.+|...+..+++
T Consensus        63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~  125 (415)
T 2hqs_A           63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNS-----------------YKVNKQWLRYAGH  125 (415)
T ss_dssp             GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEE-----------------EEECGGGHHHHHH
T ss_pred             cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeE-----------------EEcChhHHHHHHH
Confidence            46778889999988888886    467    8999999  8887664322                 4567777777777


Q ss_pred             cC--------------CCCEEEEEeCC------CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC
Q 001163          427 SP--------------DGTLFGVAYSK------HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED  486 (1134)
Q Consensus       427 sp--------------d~~~las~s~d------g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d  486 (1134)
                      ++              .+..++.++.+      +.|++||+.++. .+   .+.+|...|.+++|+|||+  .|++++.|
T Consensus       126 ~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~~  199 (415)
T 2hqs_A          126 TASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTFE  199 (415)
T ss_dssp             HHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEECT
T ss_pred             HHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEec
Confidence            65              26677776654      799999998543 33   5778999999999999999  78888887


Q ss_pred             C---eEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEE-EecCCCc--EEEEecCCCCceeeecCCCCCeeEEEEC
Q 001163          487 R---VIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIF-STATDGK--IKAWLYDNLGSRVDYDAPGHSSTMMAYS  560 (1134)
Q Consensus       487 ~---~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~s~dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~s  560 (1134)
                      +   .|++||+.+++.. .+..|...+.+++|+|  +|+.|+ +++.|+.  |++||+.+.+. ..+..+...+.+++|+
T Consensus       200 ~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s  275 (415)
T 2hqs_A          200 SGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWF  275 (415)
T ss_dssp             TSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEEC
T ss_pred             CCCcEEEEEECCCCcEE-EeecCCCcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEEC
Confidence            5   9999999998875 4667888999999965  446666 6766665  99999987654 4555666789999999


Q ss_pred             cCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCceeEEEe
Q 001163          561 ADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE---FMIKFWDMDNVNLLASID  637 (1134)
Q Consensus       561 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~  637 (1134)
                      |||++|++++.+ ++...|++||+.+++.. .+..+.. .+..++|+|+|++|++++.+   +.|++||+.+++.. .+.
T Consensus       276 pdg~~l~~~s~~-~g~~~i~~~d~~~~~~~-~l~~~~~-~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~  351 (415)
T 2hqs_A          276 PDSQNLAFTSDQ-AGRPQVYKVNINGGAPQ-RITWEGS-QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS  351 (415)
T ss_dssp             TTSSEEEEEECT-TSSCEEEEEETTSSCCE-ECCCSSS-EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC
T ss_pred             CCCCEEEEEECC-CCCcEEEEEECCCCCEE-EEecCCC-cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Eec
Confidence            999999988743 34557999999988753 3444433 78889999999999988853   58999999988764 343


Q ss_pred             cCCCCCCcceEEEcCCCcEEEEEECCC---cEEEEEccCC
Q 001163          638 ADGGLQASPCIRFNKEGILLAVSTNDN---GIKILANADG  674 (1134)
Q Consensus       638 ~~~~~~~v~~v~~sp~~~~l~~~~~dg---~i~iw~~~~~  674 (1134)
                      .+  . .+.+++|+|+|++|++++.++   .|++|++..+
T Consensus       352 ~~--~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~  388 (415)
T 2hqs_A          352 ST--F-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR  388 (415)
T ss_dssp             CS--S-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred             CC--C-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence            32  2 788999999999999988776   7888887643

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.92  E-value=3.2e-23  Score=259.34  Aligned_cols=303  Identities=12%  Similarity=0.048  Sum_probs=211.5

Q ss_pred             CCeeEEEEcCCCCeEEEEEeC-CC-----cEEEEecCCccceeeeceeeee-----ccccCccccccccccCCCCEEEEE
Q 001163          357 SAVKSMDFHPVQQILLVVGTN-MG-----DVMLWEVGSRERIAVKSFKVWE-----LGACSMPLQASLSSDYTASVNRVM  425 (1134)
Q Consensus       357 ~~V~~v~fsp~g~~lla~gs~-dg-----~v~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~h~~~V~~l~  425 (1134)
                      ..|.+++|||||++| ++++. |+     .|++||+.+++........-..     +...........-......|.+++
T Consensus        37 ~~~~~~~~SpdG~~l-a~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           37 PTLMKPKVAPDGSRV-TFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCEEEEECTTSSEE-EEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCceEecCCCEE-EEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            468899999999965 56665 88     8999999998754421100000     000000000000000013488999


Q ss_pred             EcCCCCEEEEEeCCCEEEEEEccCCc--eeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEe
Q 001163          426 WSPDGTLFGVAYSKHIVHLYTYHGGD--ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF  503 (1134)
Q Consensus       426 ~spd~~~las~s~dg~v~iwd~~~~~--~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  503 (1134)
                      |||||++|++++. +.|++||+.++.  ...   .+..|...+.+++|||||+  +|+.++ ++.|++||+.+++.....
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~~~  188 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQLT  188 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEECC
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEEec
Confidence            9999999999987 899999999872  233   3667888999999999999  677776 469999999998877655


Q ss_pred             cCCCcC----------------EEEEeccccCCccEEEEecCCC---------------------------------cEE
Q 001163          504 EGHESP----------------VYSICPHHKENIQFIFSTATDG---------------------------------KIK  534 (1134)
Q Consensus       504 ~~h~~~----------------v~~~~~~~~~~~~~l~s~s~dg---------------------------------~i~  534 (1134)
                      ..+...                +.+++|+  +||++|++++.|+                                 .|.
T Consensus       189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~S--pDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~  266 (741)
T 2ecf_A          189 ADGSTTIGNGIAEFVADEEMDRHTGYWWA--PDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG  266 (741)
T ss_dssp             CCCCSSEEESCCCHHHHHHSCCCCSEEEC--TTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred             cCCccceeccccceeeeeccccccceEEC--CCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence            544433                3567775  5568888887665                                 788


Q ss_pred             EEecCC-CCceeeec--CCCCCeeEEEECcCCCEEEEEecC-CCCCeEEEEEeCCCCeeEEEecCCCCC---ceEEEEEc
Q 001163          535 AWLYDN-LGSRVDYD--APGHSSTMMAYSADGARLFSCGTN-KEGESYLVEWNESEGAVKRTYHGLGKR---SVGVVQFD  607 (1134)
Q Consensus       535 vwd~~~-~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~-~~~~~~i~~wd~~~~~~~~~~~~~~~~---~v~~~~~~  607 (1134)
                      +||+.+ ++......  .+...+..++| |||++|++.+.+ ...+..|++||+.+++....+..+...   .+..++|+
T Consensus       267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s  345 (741)
T 2ecf_A          267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL  345 (741)
T ss_dssp             EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred             EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence            899887 66544332  24457899999 999999987652 234677999999999887777665432   23578999


Q ss_pred             CCCCEEEEEeCCCeEEEEEcC-CCceeEEEecCCCCCCcceE-EEcCCCcEEEEE-ECCC--cEEEEEccC
Q 001163          608 TTKNRFLAAGDEFMIKFWDMD-NVNLLASIDADGGLQASPCI-RFNKEGILLAVS-TNDN--GIKILANAD  673 (1134)
Q Consensus       608 ~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v-~~sp~~~~l~~~-~~dg--~i~iw~~~~  673 (1134)
                      |||+++++++.+|.+.+|.++ ++. ...+..+  ...+..+ .|+|+|+.|+.. +.++  .+++|++..
T Consensus       346 pdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          346 DDGSILWSSERTGFQHLYRIDSKGK-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             TTSCEEEEECTTSSCEEEEECSSSC-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred             CCCeEEEEecCCCccEEEEEcCCCC-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence            999988888899988888765 344 5555433  4456666 599999877654 4454  888998754

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=3e-23  Score=238.41  Aligned_cols=307  Identities=14%  Similarity=0.132  Sum_probs=227.1

Q ss_pred             CCCCEEEEEEecCCCceEEEEEe----CCC----eEEEEEC--CCCcee--EEecCCCcCEEEEecccc-----------
Q 001163          462 HVGSVNDLAFSYPNKQLSVVTCG----EDR----VIKVWDA--VTGTKQ--YIFEGHESPVYSICPHHK-----------  518 (1134)
Q Consensus       462 h~~~V~~v~~s~~~~~~~l~s~s----~d~----~i~iwd~--~~~~~~--~~~~~h~~~v~~~~~~~~-----------  518 (1134)
                      +...+...+|.+.|.. ++++|+    .||    .+++||+  .+++++  ..+.+|...+..+++.+.           
T Consensus        61 ~~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~  139 (415)
T 2hqs_A           61 SAQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIK  139 (415)
T ss_dssp             SGGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSC
T ss_pred             cccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCC
Confidence            3356788899999887 677776    467    8999999  999987  458889888877766531           


Q ss_pred             -CCccEEEEecCC------CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEE
Q 001163          519 -ENIQFIFSTATD------GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKR  591 (1134)
Q Consensus       519 -~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~  591 (1134)
                       ..+..++.++.+      +.|++||++. .....+..+...+.+++|+|||++|++++.++ +...|++||+.+++...
T Consensus       140 ~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~-~~~~i~~~d~~tg~~~~  217 (415)
T 2hqs_A          140 GAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVRQ  217 (415)
T ss_dssp             CCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTTCCEEE
T ss_pred             CcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecC-CCcEEEEEECCCCcEEE
Confidence             013456555544      7999999974 44555666777899999999999999988653 34679999999988754


Q ss_pred             EecCCCCCceEEEEEcCCCCEEE-EEeCCC--eEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEEC-CC--c
Q 001163          592 TYHGLGKRSVGVVQFDTTKNRFL-AAGDEF--MIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTN-DN--G  665 (1134)
Q Consensus       592 ~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~-dg--~  665 (1134)
                       +..+.. .+.+++|+|+|+.|+ +++.++  .|++||+.+++. ..+..  +...+.+++|+|+|++|++++. ++  .
T Consensus       218 -l~~~~~-~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~--~~~~~~~~~~spdg~~l~~~s~~~g~~~  292 (415)
T 2hqs_A          218 -VASFPR-HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTD--GRSNNTEPTWFPDSQNLAFTSDQAGRPQ  292 (415)
T ss_dssp             -EECCSS-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCC--CSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred             -eecCCC-cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcC--CCCcccceEECCCCCEEEEEECCCCCcE
Confidence             555544 789999999999888 555555  499999998876 34443  3557889999999999988876 44  4


Q ss_pred             EEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccccc
Q 001163          666 IKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIAD  745 (1134)
Q Consensus       666 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  745 (1134)
                      |++|++.++. . ..                                                                 
T Consensus       293 i~~~d~~~~~-~-~~-----------------------------------------------------------------  305 (415)
T 2hqs_A          293 VYKVNINGGA-P-QR-----------------------------------------------------------------  305 (415)
T ss_dssp             EEEEETTSSC-C-EE-----------------------------------------------------------------
T ss_pred             EEEEECCCCC-E-EE-----------------------------------------------------------------
Confidence            5555554331 0 00                                                                 


Q ss_pred             ccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCccc
Q 001163          746 EAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLW  825 (1134)
Q Consensus       746 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  825 (1134)
                                                                                                      
T Consensus       306 --------------------------------------------------------------------------------  305 (415)
T 2hqs_A          306 --------------------------------------------------------------------------------  305 (415)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-C---CeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEE
Q 001163          826 QPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIA  901 (1134)
Q Consensus       826 d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-d---g~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la  901 (1134)
                                 +.  .+...+..++|+|||++|++++ +   ..|++||+.+++.. .+..+. .+.+++|+| ++++|+
T Consensus       306 -----------l~--~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp-dg~~l~  369 (415)
T 2hqs_A          306 -----------IT--WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP-NGTMVI  369 (415)
T ss_dssp             -----------CC--CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-TSSEEE
T ss_pred             -----------Ee--cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-CCCEEE
Confidence                       00  0233455677777777777665 3   46999999888764 455454 899999999 889888


Q ss_pred             EEeCCC---cEEEEEcccceEEEeccCccCceEEEEEeeCCC
Q 001163          902 IGMEDS---SIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLN  940 (1134)
Q Consensus       902 ~g~~dg---~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~  940 (1134)
                      +++.++   .|++||+. ++....+.+|.+.|.+++|+|.-.
T Consensus       370 ~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          370 YSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             EEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred             EEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence            888777   79999987 556778999999999999998654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.91  E-value=3.4e-22  Score=250.08  Aligned_cols=245  Identities=9%  Similarity=0.002  Sum_probs=185.4

Q ss_pred             CCCEEEEEEcCCCCEEEEEeC-CC-----EEEEEEccCCceeeeeeeeecCC------------------------CCEE
Q 001163          418 TASVNRVMWSPDGTLFGVAYS-KH-----IVHLYTYHGGDELRNHLEIEAHV------------------------GSVN  467 (1134)
Q Consensus       418 ~~~V~~l~~spd~~~las~s~-dg-----~v~iwd~~~~~~~~~~~~l~~h~------------------------~~V~  467 (1134)
                      ...|.+++|||||++|++++. |+     .|++||+.+++...   .+..|.                        ..|.
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  112 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRL---LVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV  112 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEE---EECGGGTC--------------------CCEESC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeE---ccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence            457999999999999999998 88     89999999987543   233332                        2388


Q ss_pred             EEEEecCCCceEEEEEeCCCeEEEEECCCCc--eeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCcee
Q 001163          468 DLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT--KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV  545 (1134)
Q Consensus       468 ~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~  545 (1134)
                      +++|||||+  +|++++. +.|++||+.++.  .+..+..|...+.+++|+|  ||++|+.++ ++.|++||+.++....
T Consensus       113 ~~~~SpDg~--~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP--DG~~la~~~-~~~i~~~d~~~g~~~~  186 (741)
T 2ecf_A          113 DYQWSPDAQ--RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP--KGGFVSFIR-GRNLWVIDLASGRQMQ  186 (741)
T ss_dssp             CCEECTTSS--EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT--TSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             eeEECCCCC--EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC--CCCEEEEEe-CCcEEEEecCCCCEEE
Confidence            999999999  6777776 999999998883  4556777888899999865  558888887 4699999998755443


Q ss_pred             eecCCCCC----------------eeEEEECcCCCEEEEEecCCC-----------------------------CCeEEE
Q 001163          546 DYDAPGHS----------------STMMAYSADGARLFSCGTNKE-----------------------------GESYLV  580 (1134)
Q Consensus       546 ~~~~~~~~----------------v~~~~~s~~~~~l~~~~~~~~-----------------------------~~~~i~  580 (1134)
                      ....+...                +..++|||||++|++++.++.                             ....|+
T Consensus       187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~  266 (741)
T 2ecf_A          187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG  266 (741)
T ss_dssp             CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred             eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence            33322221                478999999999999875431                             123789


Q ss_pred             EEeCCC-CeeEEEecC-CCCCceEEEEEcCCCCEEEEEeC-----CCeEEEEEcCCCceeEEEecCCCC--CCcceEEEc
Q 001163          581 EWNESE-GAVKRTYHG-LGKRSVGVVQFDTTKNRFLAAGD-----EFMIKFWDMDNVNLLASIDADGGL--QASPCIRFN  651 (1134)
Q Consensus       581 ~wd~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~--~~v~~v~~s  651 (1134)
                      +||+.+ ++....... .....+..++| |||++|++++.     +..|++||+.+++....+..+...  ..+..++|+
T Consensus       267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s  345 (741)
T 2ecf_A          267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL  345 (741)
T ss_dssp             EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred             EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence            999998 876655433 22337889999 99999997753     578999999999887776543211  135688999


Q ss_pred             CCCcEEEEEECCCcEEEEEcc
Q 001163          652 KEGILLAVSTNDNGIKILANA  672 (1134)
Q Consensus       652 p~~~~l~~~~~dg~i~iw~~~  672 (1134)
                      |||+++++++.||.++||.+.
T Consensus       346 pdg~~~~~~~~~g~~~l~~~~  366 (741)
T 2ecf_A          346 DDGSILWSSERTGFQHLYRID  366 (741)
T ss_dssp             TTSCEEEEECTTSSCEEEEEC
T ss_pred             CCCeEEEEecCCCccEEEEEc
Confidence            999988888888888888654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.90  E-value=5.7e-23  Score=256.40  Aligned_cols=287  Identities=11%  Similarity=0.079  Sum_probs=209.2

Q ss_pred             CeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCC---CEEEEEEcCCCCEEE
Q 001163          358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTA---SVNRVMWSPDGTLFG  434 (1134)
Q Consensus       358 ~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~spd~~~la  434 (1134)
                      .+.+++|||||++ +++ +.||+|++||+.+++....                   +.+|..   .|.+++|||||++||
T Consensus        18 ~~~~~~~spdg~~-~~~-~~dg~i~~~d~~~g~~~~~-------------------~~~~~~~~~~v~~~~~SpDg~~l~   76 (723)
T 1xfd_A           18 HDPEAKWISDTEF-IYR-EQKGTVRLWNVETNTSTVL-------------------IEGKKIESLRAIRYEISPDREYAL   76 (723)
T ss_dssp             CCCCCCBSSSSCB-CCC-CSSSCEEEBCGGGCCCEEE-------------------ECTTTTTTTTCSEEEECTTSSEEE
T ss_pred             cccccEEcCCCcE-EEE-eCCCCEEEEECCCCcEEEE-------------------eccccccccccceEEECCCCCEEE
Confidence            3568899999994 455 7899999999999876442                   344544   499999999999999


Q ss_pred             EEeCC---------CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecC
Q 001163          435 VAYSK---------HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG  505 (1134)
Q Consensus       435 s~s~d---------g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  505 (1134)
                      +++.+         +.|.+||+.+++. .......+|...+..++|||||+  .|+.++. +.|++||+.+++.......
T Consensus        77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~~  152 (723)
T 1xfd_A           77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVST  152 (723)
T ss_dssp             EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred             EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEecC
Confidence            99874         7889999999875 32223345666699999999999  5777775 7999999999988776665


Q ss_pred             CCcCE------------------EEEeccccCCccEEEEecCCC----------------------------------cE
Q 001163          506 HESPV------------------YSICPHHKENIQFIFSTATDG----------------------------------KI  533 (1134)
Q Consensus       506 h~~~v------------------~~~~~~~~~~~~~l~s~s~dg----------------------------------~i  533 (1134)
                      +...+                  .+++|+  +||+.|++++.|+                                  .|
T Consensus       153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~S--pDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l  230 (723)
T 1xfd_A          153 GKEGVIYNGLSDWLYEEEILKTHIAHWWS--PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL  230 (723)
T ss_dssp             CBTTTEEEEECCHHHHHTTSSSSEEEEEC--TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred             CCCCceECcccceeEEEEeccCcceEEEC--CCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence            44433                  678875  4558888877543                                  79


Q ss_pred             EEEecCCCCceeeecCC------CCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCce----EE
Q 001163          534 KAWLYDNLGSRVDYDAP------GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSV----GV  603 (1134)
Q Consensus       534 ~vwd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v----~~  603 (1134)
                      ++||+.+.+....+..+      ...+..++|+|||+++++..........|++||+.+++....+..+....+    ..
T Consensus       231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~  310 (723)
T 1xfd_A          231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEE  310 (723)
T ss_dssp             EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCC
T ss_pred             EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCC
Confidence            99999877654555443      447889999999998877765545567899999999987776654433233    36


Q ss_pred             EEEcCCCCEEEEE--eCCC------eEEEEE-cCCCce--eEEEecCCCCCCcc-eEEEcCCCcEEEEEECC---CcEEE
Q 001163          604 VQFDTTKNRFLAA--GDEF------MIKFWD-MDNVNL--LASIDADGGLQASP-CIRFNKEGILLAVSTND---NGIKI  668 (1134)
Q Consensus       604 ~~~~~~~~~l~~~--~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~v~-~v~~sp~~~~l~~~~~d---g~i~i  668 (1134)
                      ++|+|||+.|+..  ..++      .|++|| ..+++.  ...+.. + ...+. .++|+|+|+.|+..+.+   +.+++
T Consensus       311 ~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~-~-~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l  388 (723)
T 1xfd_A          311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS-G-DWDVTKILAYDEKGNKIYFLSTEDLPRRRQL  388 (723)
T ss_dssp             CEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC-S-SSCEEEEEEEETTTTEEEEEESSSCTTCCEE
T ss_pred             ceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec-C-CeEEEeeeEEcCCCCEEEEEEcCCCCcceEE
Confidence            8999999977754  4666      577777 344441  333432 1 22333 36999999999876665   78889


Q ss_pred             EEccC
Q 001163          669 LANAD  673 (1134)
Q Consensus       669 w~~~~  673 (1134)
                      |++..
T Consensus       389 ~~~~~  393 (723)
T 1xfd_A          389 YSANT  393 (723)
T ss_dssp             EEECS
T ss_pred             EEEeC
Confidence            98754

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.90  E-value=2.8e-22  Score=250.20  Aligned_cols=381  Identities=12%  Similarity=0.102  Sum_probs=249.8

Q ss_pred             CeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCC--ceEEEEEcCCCCEEEEEeCC---------Ce
Q 001163          553 SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKR--SVGVVQFDTTKNRFLAAGDE---------FM  621 (1134)
Q Consensus       553 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d---------g~  621 (1134)
                      ...+++|+|||+++++ +.    ++.|++||..+++....+..+...  .+..++|+|||++|++++.+         +.
T Consensus        18 ~~~~~~~spdg~~~~~-~~----dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~   92 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQ----KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY   92 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CS----SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred             cccccEEcCCCcEEEE-eC----CCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence            4667899999997765 33    336999999999888887766531  38899999999999999864         78


Q ss_pred             EEEEEcCCCceeEEEec-CCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhccc
Q 001163          622 IKFWDMDNVNLLASIDA-DGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAP  700 (1134)
Q Consensus       622 i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  700 (1134)
                      |++||+.+++. ..+.. .++...+..++|+|||+.|+.++. +.|++|++.++. ..+....+...+            
T Consensus        93 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~-~~~~~~~~~~~~------------  157 (723)
T 1xfd_A           93 YVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ-AIRVVSTGKEGV------------  157 (723)
T ss_dssp             EEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC-CEEEECCCBTTT------------
T ss_pred             EEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc-eEEEecCCCCCc------------
Confidence            99999999886 33332 233345889999999999999886 799999998763 222222111000            


Q ss_pred             ccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEE
Q 001163          701 AIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVS  780 (1134)
Q Consensus       701 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~  780 (1134)
                                                               +..+     +.-|-..+               .-...+.
T Consensus       158 -----------------------------------------~~~g-----~~~~v~~e---------------e~~~~~~  176 (723)
T 1xfd_A          158 -----------------------------------------IYNG-----LSDWLYEE---------------EILKTHI  176 (723)
T ss_dssp             -----------------------------------------EEEE-----ECCHHHHH---------------TTSSSSE
T ss_pred             -----------------------------------------eECc-----ccceeEEE---------------EeccCcc
Confidence                                                     0000     00000000               0112457


Q ss_pred             EEEEecCCceeeeeccC-CeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEE
Q 001163          781 RLIYTNSGLAILALASN-AVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVM  859 (1134)
Q Consensus       781 ~l~~spdg~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la  859 (1134)
                      +++|||||+.|++++.+ +.+.+|++...                    .+          .+...+..+.|+++|..  
T Consensus       177 ~~~~SpDg~~la~~~~~~~~~~~~~~~~~--------------------~~----------~~~~~~~~~~~~~~G~~--  224 (723)
T 1xfd_A          177 AHWWSPDGTRLAYAAINDSRVPIMELPTY--------------------TG----------SIYPTVKPYHYPKAGSE--  224 (723)
T ss_dssp             EEEECTTSSEEEEEEEECTTSCEEEECCC--------------------SS----------SSSCCCEEEECCBTTSC--
T ss_pred             eEEECCCCCEEEEEEECCCccceEEeecc--------------------CC----------cCCCcceeccCCCCCCC--
Confidence            89999999999988765 45556654311                    00          02234678889888863  


Q ss_pred             EeeCCeEEEEEccCCeEEEEecCC------CCCeEEEEEcCCCCcEEEEEeC----CCcEEEEEcccceEEEeccCc-cC
Q 001163          860 SASGGKISLFNMMTFKTMTTFMPP------PPAATFLAFHPQDNNIIAIGME----DSSIQIYNVRVDEVKTKLKGH-QK  928 (1134)
Q Consensus       860 ~~sdg~i~lwd~~~~~~~~~~~~~------~~~v~~l~~sp~~~~~la~g~~----dg~i~iwd~~~~~~~~~l~~h-~~  928 (1134)
                       ..+.+|++||+.+++....+..+      ...+..++|+| ||++|++...    +..|++||+.+++....+..+ ..
T Consensus       225 -~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~  302 (723)
T 1xfd_A          225 -NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEA  302 (723)
T ss_dssp             -CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSS
T ss_pred             -CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCC
Confidence             22458999999998876676654      56789999999 8888877653    358999999999877665443 34


Q ss_pred             ce----EEEEEeeCCCEEEE--EeCCC------cEEEEE-CCCCccccceeeeecCCCCCCCCCceE-EEEcCCCCEEEE
Q 001163          929 RI----TGLAFSNTLNVLVS--SGADS------QLCVWS-TDGWEKQASKFLTIPNGRTASALADTR-VQFHLDQTHLLA  994 (1134)
Q Consensus       929 ~V----~~l~~s~d~~~l~s--~s~Dg------~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~fs~dg~~l~~  994 (1134)
                      .+    ..++|||||+.|+.  +..|+      .|.+|| ..+++...  ...+..++.    .+.. ++|||||+.|+.
T Consensus       303 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~--~~~l~~~~~----~~~~~~~~spdg~~l~~  376 (723)
T 1xfd_A          303 WLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDN--IQSITSGDW----DVTKILAYDEKGNKIYF  376 (723)
T ss_dssp             CCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCC--CCBSCCSSS----CEEEEEEEETTTTEEEE
T ss_pred             EEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccc--eeEeecCCe----EEEeeeEEcCCCCEEEE
Confidence            33    37899999998775  45666      466677 33332000  111222222    2443 699999999987


Q ss_pred             -Eee---ceEEEEeCCCcc--cceeeccC-CCccCEEEEEEccCCCEEEEEecC-C--cEEEeecCCCcc
Q 001163          995 -VHE---TQIAIYEAPKLE--CLKQFVPR-EASGPITHATYSCDSQSIYVAFEE-G--SVGVLTASTLRL 1054 (1134)
Q Consensus       995 -~~d---~~i~iwd~~~~~--~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~s~D-g--~i~vwd~~~~~~ 1054 (1134)
                       +.+   +.+++|++....  ....+... .|...+..++|||||++|+..... +  ...+++..++..
T Consensus       377 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~  446 (723)
T 1xfd_A          377 LSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKK  446 (723)
T ss_dssp             EESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCE
T ss_pred             EEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCE
Confidence             443   789999987543  23333310 156778899999999998765432 2  234456555443

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.90  E-value=3.8e-21  Score=214.77  Aligned_cols=280  Identities=10%  Similarity=0.064  Sum_probs=205.9

Q ss_pred             EEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeC-CC
Q 001163          362 MDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS-KH  440 (1134)
Q Consensus       362 v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~-dg  440 (1134)
                      ..|++++.+++++++.++.|.+||..+++.+..                   ...+...+ +++|+|||++|++++. ++
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~   62 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ   62 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence            467788888899999999999999999887653                   12244556 9999999997777665 88


Q ss_pred             EEEEEEccCCce-eeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC-C--eEEEEECCCCceeEEecCCCcCEEEEecc
Q 001163          441 IVHLYTYHGGDE-LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED-R--VIKVWDAVTGTKQYIFEGHESPVYSICPH  516 (1134)
Q Consensus       441 ~v~iwd~~~~~~-~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d-~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~  516 (1134)
                      .|.+||+.+++. ..   .+..+..+..+++|+|+|+  +++++..+ +  .|.+||+.+++.+..+..+ ....+++|+
T Consensus        63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s  136 (331)
T 3u4y_A           63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS  136 (331)
T ss_dssp             EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred             eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence            999999999875 33   4555666666699999999  56655544 3  8999999999998887754 456888886


Q ss_pred             ccCCcc-EEEEecCCCc-EEEEecCCCCcee----eecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCee-
Q 001163          517 HKENIQ-FIFSTATDGK-IKAWLYDNLGSRV----DYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV-  589 (1134)
Q Consensus       517 ~~~~~~-~l~s~s~dg~-i~vwd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-  589 (1134)
                      ++  |+ ++++...++. |.+|+++..+...    ...........++|+|+|++++++..   .+..|.+||+.+++. 
T Consensus       137 pd--g~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~  211 (331)
T 3u4y_A          137 PN--GNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENI  211 (331)
T ss_dssp             TT--SSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSC
T ss_pred             CC--CCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCccc
Confidence            54  45 4555566688 9999988655432    22233456789999999998777653   244699999999887 


Q ss_pred             --EEEecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCce--eEEEecC--CCCC---CcceEEEcCCCcEEEE
Q 001163          590 --KRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNL--LASIDAD--GGLQ---ASPCIRFNKEGILLAV  659 (1134)
Q Consensus       590 --~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~--~~~~---~v~~v~~sp~~~~l~~  659 (1134)
                        +..+...  ..+..++|+|+++++++++ .++.|.+||..+++.  +..+...  ....   ....++|+|+|++|++
T Consensus       212 ~~~~~~~~~--~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v  289 (331)
T 3u4y_A          212 TLLNAVGTN--NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFI  289 (331)
T ss_dssp             EEEEEEECS--SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEE
T ss_pred             ceeeeccCC--CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEE
Confidence              7777654  2567899999999887765 578899999999887  4443322  1111   1245899999998876


Q ss_pred             EEC-CCcEEEEEccCC
Q 001163          660 STN-DNGIKILANADG  674 (1134)
Q Consensus       660 ~~~-dg~i~iw~~~~~  674 (1134)
                      ++. ++.|.+|++...
T Consensus       290 ~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          290 SANISRELKVFTISGK  305 (331)
T ss_dssp             EETTTTEEEEEETTSC
T ss_pred             ecCCCCcEEEEEecCC
Confidence            655 569999999764

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=6e-21  Score=237.25  Aligned_cols=238  Identities=8%  Similarity=0.003  Sum_probs=167.5

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCEEEEEEccCCcee-eeeeeeecCC-----------------CCEEEEEEecCCCceEEE
Q 001163          420 SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDEL-RNHLEIEAHV-----------------GSVNDLAFSYPNKQLSVV  481 (1134)
Q Consensus       420 ~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~-~~~~~l~~h~-----------------~~V~~v~~s~~~~~~~l~  481 (1134)
                      .+..+.|+  |+.+++++.|+ | +||+.+++.+ ..   +..|.                 ..|.+++|+|| +  .++
T Consensus        27 ~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~---l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~--~~~   96 (706)
T 2z3z_A           27 YVVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTT---RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G--LVV   96 (706)
T ss_dssp             -CTTCEEE--TTEEEEEETTE-E-EEEC-------CE---EEEHHHHHTTC-----------CCCEEEEETTT-T--EEE
T ss_pred             cCCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEE---eechhHhhhhccchhccccccccCceeEEECCC-C--eEE
Confidence            34557888  67777888888 8 9999998762 32   22232                 56999999999 5  344


Q ss_pred             EEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCC-----CCceeeecCCCCC---
Q 001163          482 TCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN-----LGSRVDYDAPGHS---  553 (1134)
Q Consensus       482 s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-----~~~~~~~~~~~~~---  553 (1134)
                      .+ .|+.|++||+.+++.... ..+...+.+++|+|  ||+.|+++ .|+.|++||+.+     ++...........   
T Consensus        97 ~~-~~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~Sp--dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~  171 (706)
T 2z3z_A           97 LF-TQGGLVGFDMLARKVTYL-FDTNEETASLDFSP--VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVY  171 (706)
T ss_dssp             EE-ETTEEEEEETTTTEEEEE-ECCTTCCTTCEECT--TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred             EE-ECCEEEEEECCCCceEEc-cCCcccccCCcCCC--CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence            33 359999999988876544 44666777788854  55788875 679999999987     6554433333222   


Q ss_pred             -----------eeEEEECcCCCEEEEEecCC-----------------------------CCCeEEEEEeCCCCeeEEEe
Q 001163          554 -----------STMMAYSADGARLFSCGTNK-----------------------------EGESYLVEWNESEGAVKRTY  593 (1134)
Q Consensus       554 -----------v~~~~~s~~~~~l~~~~~~~-----------------------------~~~~~i~~wd~~~~~~~~~~  593 (1134)
                                 +.+++|+|||++|++++.+.                             ..+..|++||+.+++.....
T Consensus       172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~  251 (706)
T 2z3z_A          172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ  251 (706)
T ss_dssp             SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred             ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence                       47899999999999987331                             24567999999998876554


Q ss_pred             cC-CCCCceEEEEEcCCCCEEEEEeCCC-----eEEEEEcCCCceeEEEecCCCC---CCcceEEEcC--CCcEEEEEEC
Q 001163          594 HG-LGKRSVGVVQFDTTKNRFLAAGDEF-----MIKFWDMDNVNLLASIDADGGL---QASPCIRFNK--EGILLAVSTN  662 (1134)
Q Consensus       594 ~~-~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~---~~v~~v~~sp--~~~~l~~~~~  662 (1134)
                      .. .....+..++|+||+++|++++.++     .|++||..+++....+......   ..+..++|+|  +|+++++++.
T Consensus       252 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~  331 (706)
T 2z3z_A          252 TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR  331 (706)
T ss_dssp             CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECT
T ss_pred             cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEcc
Confidence            33 2233688999999999999988665     8999999998444333211111   2346789999  9999999988


Q ss_pred             CCcEEEEEcc
Q 001163          663 DNGIKILANA  672 (1134)
Q Consensus       663 dg~i~iw~~~  672 (1134)
                      ||.+++|.+.
T Consensus       332 ~g~~~l~~~~  341 (706)
T 2z3z_A          332 DGWNHLYLYD  341 (706)
T ss_dssp             TSSCEEEEEE
T ss_pred             CCccEEEEEE
Confidence            9988888764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.89  E-value=2e-20  Score=211.08  Aligned_cols=279  Identities=11%  Similarity=0.082  Sum_probs=215.1

Q ss_pred             EEEeecCCCeeEEEEcCCCCeEEEEEeC------CCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEE
Q 001163          350 VMTLNQGSAVKSMDFHPVQQILLVVGTN------MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNR  423 (1134)
Q Consensus       350 ~~~~~h~~~V~~v~fsp~g~~lla~gs~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  423 (1134)
                      .........+..++|+|+|++++++...      ++.|.+||..+++.+...                    .....+.+
T Consensus        34 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~--------------------~~~~~~~~   93 (353)
T 3vgz_A           34 MLRKAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAI--------------------HNDLKPFG   93 (353)
T ss_dssp             EEEEEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEE--------------------EESSCCCS
T ss_pred             hhhhhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEE--------------------ecCCCcce
Confidence            3345566788999999999977655543      678999999998766531                    12345778


Q ss_pred             EEEcCCCCEEEEE-eCCCEEEEEEccCCceeeeeeeeecCCC---------CEEEEEEecCCCceEEEEE--eCCCeEEE
Q 001163          424 VMWSPDGTLFGVA-YSKHIVHLYTYHGGDELRNHLEIEAHVG---------SVNDLAFSYPNKQLSVVTC--GEDRVIKV  491 (1134)
Q Consensus       424 l~~spd~~~las~-s~dg~v~iwd~~~~~~~~~~~~l~~h~~---------~V~~v~~s~~~~~~~l~s~--s~d~~i~i  491 (1134)
                      ++|+|+|++++++ ..++.|.+||..+++.+..   +..+..         .+.+++|+|+++.  ++.+  +.++.|.+
T Consensus        94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~--l~~~~~~~~~~i~~  168 (353)
T 3vgz_A           94 ATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGR---LVLDDRKRTEEVRPLQPRELVADDATNT--VYISGIGKESVIWV  168 (353)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTCCEEEE---EESCCCCCCSSCCCCEEEEEEEETTTTE--EEEEEESSSCEEEE
T ss_pred             EEECCCCCEEEEEecCCCEEEEEeCCCCeeEEE---EecCCCccccccCCCCCceEEECCCCCE--EEEEecCCCceEEE
Confidence            9999999966554 5579999999999886553   333322         2789999999995  4443  45889999


Q ss_pred             EECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecC----CCCCeeEEEECcCCCEEE
Q 001163          492 WDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA----PGHSSTMMAYSADGARLF  567 (1134)
Q Consensus       492 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~  567 (1134)
                      ||..+++.+..+..+...+.+++|++  +++++++++.++.|.+||+.+.+....+..    +...+..++|+|++++++
T Consensus       169 ~d~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  246 (353)
T 3vgz_A          169 VDGGNIKLKTAIQNTGKMSTGLALDS--EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAF  246 (353)
T ss_dssp             EETTTTEEEEEECCCCTTCCCCEEET--TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEE
T ss_pred             EcCCCCceEEEecCCCCccceEEECC--CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEE
Confidence            99999999988876666677788754  557898899999999999988776655543    344677899999999887


Q ss_pred             EEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcc
Q 001163          568 SCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASP  646 (1134)
Q Consensus       568 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  646 (1134)
                      ++..   ....|.+||..+++.+..+.....   ..++|+|+++++++++ .++.|.+||..+++.+..+...   ..+.
T Consensus       247 ~~~~---~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~  317 (353)
T 3vgz_A          247 ITDS---KAAEVLVVDTRNGNILAKVAAPES---LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP---THPN  317 (353)
T ss_dssp             EEES---SSSEEEEEETTTCCEEEEEECSSC---CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC---SEEE
T ss_pred             EEeC---CCCEEEEEECCCCcEEEEEEcCCC---ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC---CCCC
Confidence            7753   245799999999998888775432   4689999999777666 7899999999999998888653   2568


Q ss_pred             eEEEcCCCcEEEEEECCC
Q 001163          647 CIRFNKEGILLAVSTNDN  664 (1134)
Q Consensus       647 ~v~~sp~~~~l~~~~~dg  664 (1134)
                      +++|+|+|++|+++..++
T Consensus       318 ~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          318 SLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             EEEECTTSCEEEEEEECC
T ss_pred             eEEEcCCCCEEEEEEccc
Confidence            999999999877776654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.88  E-value=4.3e-21  Score=238.51  Aligned_cols=284  Identities=9%  Similarity=0.064  Sum_probs=201.9

Q ss_pred             cccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCC
Q 001163          776 AMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKND  855 (1134)
Q Consensus       776 ~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg  855 (1134)
                      ...|.+++|+|| +.++.+ .++.+++|++..                      ++....  ..  +...+..++|||||
T Consensus        81 ~~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~----------------------~~~~~l--~~--~~~~~~~~~~SpdG  132 (706)
T 2z3z_A           81 AFPSFRTLDAGR-GLVVLF-TQGGLVGFDMLA----------------------RKVTYL--FD--TNEETASLDFSPVG  132 (706)
T ss_dssp             -CCCEEEEETTT-TEEEEE-ETTEEEEEETTT----------------------TEEEEE--EC--CTTCCTTCEECTTS
T ss_pred             ccCceeEEECCC-CeEEEE-ECCEEEEEECCC----------------------CceEEc--cC--CcccccCCcCCCCC
Confidence            356899999999 555555 458999997643                      322221  11  45567889999999


Q ss_pred             CeEEEeeCCeEEEEEccC-----CeEEEEecCCCCC--------------eEEEEEcCCCCcEEEEEe------------
Q 001163          856 SYVMSASGGKISLFNMMT-----FKTMTTFMPPPPA--------------ATFLAFHPQDNNIIAIGM------------  904 (1134)
Q Consensus       856 ~~la~~sdg~i~lwd~~~-----~~~~~~~~~~~~~--------------v~~l~~sp~~~~~la~g~------------  904 (1134)
                      ++|+++.++.|++||+.+     ++.......+...              +.+++|+| ||++|++++            
T Consensus       133 ~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~  211 (706)
T 2z3z_A          133 DRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIV  211 (706)
T ss_dssp             SEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEE
T ss_pred             CEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEee
Confidence            999998899999999998     7776554444333              48999999 899999887            


Q ss_pred             ---------------------CCCcEEEEEcccceEEEecc--CccCceEEEEEeeCCCEEEEEeCCC-----cEEEEEC
Q 001163          905 ---------------------EDSSIQIYNVRVDEVKTKLK--GHQKRITGLAFSNTLNVLVSSGADS-----QLCVWST  956 (1134)
Q Consensus       905 ---------------------~dg~i~iwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~s~s~Dg-----~i~iwd~  956 (1134)
                                           .+..|++||+.+++......  .|...+.+++|+|||++|++++.|+     .|++||+
T Consensus       212 ~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~  291 (706)
T 2z3z_A          212 DYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDA  291 (706)
T ss_dssp             ECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEET
T ss_pred             ccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEEC
Confidence                                 44689999999988655442  5777899999999999999988776     8999999


Q ss_pred             CCCccccceeeeecCCCCCCCCCceEEEEcC--CCCEEEEE-eeceEEEEeCC-CcccceeeccCCCccCEEE-EEEccC
Q 001163          957 DGWEKQASKFLTIPNGRTASALADTRVQFHL--DQTHLLAV-HETQIAIYEAP-KLECLKQFVPREASGPITH-ATYSCD 1031 (1134)
Q Consensus       957 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~--dg~~l~~~-~d~~i~iwd~~-~~~~~~~~~~~~h~~~v~~-~~~s~d 1031 (1134)
                      .+++.... ......  ......+..++|+|  ||++++++ .++.++||++. +++.+..+.  .|...+.+ ++|+||
T Consensus       292 ~~g~~~~~-~~~~~~--~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~--~~~~~v~~~~~~spd  366 (706)
T 2z3z_A          292 ETGRFVRT-LFVETD--KHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT--KGEWEVTNFAGFDPK  366 (706)
T ss_dssp             TTCCEEEE-EEEEEC--SSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC--CSSSCEEEEEEECTT
T ss_pred             CCCceeeE-EEEccC--CCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC--CCCeEEEeeeEEcCC
Confidence            98732111 111111  10001246789999  99988875 66888888876 566666665  55677876 899999


Q ss_pred             CCEEEEEec-CC----cEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecC----CcEEEEeCC
Q 001163         1032 SQSIYVAFE-EG----SVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTD----GGVYIIEPL 1102 (1134)
Q Consensus      1032 g~~l~s~s~-Dg----~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~D----g~v~vW~~~ 1102 (1134)
                      |+.|+.++. ++    .|..||+.+++. ..+.        |...+..  ++|+| |+++|+.++.+    +.|++||+.
T Consensus       367 g~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~l~--------~~~~~~~--~~~sp-dg~~l~~~~~~~~~p~~i~l~d~~  434 (706)
T 2z3z_A          367 GTRLYFESTEASPLERHFYCIDIKGGKT-KDLT--------PESGMHR--TQLSP-DGSAIIDIFQSPTVPRKVTVTNIG  434 (706)
T ss_dssp             SSEEEEEESSSCTTCBEEEEEETTCCCC-EESC--------CSSSEEE--EEECT-TSSEEEEEEECSSCSCEEEEEESS
T ss_pred             CCEEEEEecCCCCceEEEEEEEcCCCCc-eecc--------CCCceEE--EEECC-CCCEEEEEecCCCCCcEEEEEECC
Confidence            998765554 44    677778777663 2222        2344554  48899 67877776544    459999987


Q ss_pred             CCC
Q 001163         1103 EAE 1105 (1134)
Q Consensus      1103 ~~~ 1105 (1134)
                      ..+
T Consensus       435 ~~~  437 (706)
T 2z3z_A          435 KGS  437 (706)
T ss_dssp             SCE
T ss_pred             CCe
Confidence            655

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.88  E-value=9.9e-21  Score=211.38  Aligned_cols=287  Identities=11%  Similarity=0.044  Sum_probs=197.4

Q ss_pred             EEecCCce-eeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEe
Q 001163          783 IYTNSGLA-ILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSA  861 (1134)
Q Consensus       783 ~~spdg~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~  861 (1134)
                      .|.+++.. +++...++.|.+||..                      +++...... .  +...+ .++|+|||++++++
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~----------------------~~~~~~~~~-~--~~~~~-~~~~s~dg~~l~~~   57 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTD----------------------TLEILNQIT-L--GYDFV-DTAITSDCSNVVVT   57 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETT----------------------TCCEEEEEE-C--CCCEE-EEEECSSSCEEEEE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCc----------------------ccceeeeEE-c--cCCcc-eEEEcCCCCEEEEE
Confidence            45555554 6667778999999654                      333322211 1  34455 99999999977666


Q ss_pred             e--CCeEEEEEccCCeE-EEEecCCCCCeEEEEEcCCCCcEEEEEeCCC---cEEEEEcccceEEEeccCccCceEEEEE
Q 001163          862 S--GGKISLFNMMTFKT-MTTFMPPPPAATFLAFHPQDNNIIAIGMEDS---SIQIYNVRVDEVKTKLKGHQKRITGLAF  935 (1134)
Q Consensus       862 s--dg~i~lwd~~~~~~-~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg---~i~iwd~~~~~~~~~l~~h~~~V~~l~~  935 (1134)
                      +  ++.|.+||+.+++. ...+..+.....+++|+| ++++|+++..++   .|.+||+.+++.+..+..+. ...+++|
T Consensus        58 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~  135 (331)
T 3u4y_A           58 SDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAI  135 (331)
T ss_dssp             ESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEE
T ss_pred             eCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEE
Confidence            5  68999999999987 677766666666699999 888888665553   89999999999888776544 4689999


Q ss_pred             eeCCCEEEEE-eCCCc-EEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE--eeceEEEEeCCCccc-
Q 001163          936 SNTLNVLVSS-GADSQ-LCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV--HETQIAIYEAPKLEC- 1010 (1134)
Q Consensus       936 s~d~~~l~s~-s~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~i~iwd~~~~~~- 1010 (1134)
                      +|||++|+++ ..++. |.+|++................    ......++|+|||++++++  .++.|.+||+.+++. 
T Consensus       136 spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~  211 (331)
T 3u4y_A          136 SPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISG----GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI  211 (331)
T ss_dssp             CTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECS----SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC
T ss_pred             CCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccC----CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc
Confidence            9999865554 55688 9999998643211110111111    1347899999999987774  578999999999988 


Q ss_pred             --ceeeccCCCccCEEEEEEccCCCEEEEEe-cCCcEEEeecCCCcc--eeecCCCcccCCCCCCCcee-EEEEecCCCC
Q 001163         1011 --LKQFVPREASGPITHATYSCDSQSIYVAF-EEGSVGVLTASTLRL--RCRINPTAYLPTNPSLRVYP-LVIAGNPTDP 1084 (1134)
Q Consensus      1011 --~~~~~~~~h~~~v~~~~~s~dg~~l~s~s-~Dg~i~vwd~~~~~~--~~~~~~~~~~~~~h~~~v~~-~~~~~~p~~~ 1084 (1134)
                        +..+..   ...+..++|+|||++|++++ .++.|.+||+.+++.  +..+......   +...... -.++|+| |+
T Consensus       212 ~~~~~~~~---~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~sp-dg  284 (331)
T 3u4y_A          212 TLLNAVGT---NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLI---DPRPLFGANQMALNK-TE  284 (331)
T ss_dssp             EEEEEEEC---SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCC---CCGGGTTCCCEEECT-TS
T ss_pred             ceeeeccC---CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccccccc---CCCCcccccceEECC-CC
Confidence              666652   46678999999999876655 478899999999887  2222211000   0111111 1248889 67


Q ss_pred             CEEEE-EecCCcEEEEeCCCCCCCc
Q 001163         1085 NQFAL-GLTDGGVYIIEPLEAEGRW 1108 (1134)
Q Consensus      1085 ~~l~s-~~~Dg~v~vW~~~~~~~~~ 1108 (1134)
                      ++|++ +..++.|.+||+......+
T Consensus       285 ~~l~v~~~~~~~v~v~d~~~~~~~~  309 (331)
T 3u4y_A          285 TKLFISANISRELKVFTISGKVVGY  309 (331)
T ss_dssp             SEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             CEEEEecCCCCcEEEEEecCCcccc
Confidence            76654 5556799999998766544

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.87  E-value=1.2e-20  Score=211.81  Aligned_cols=250  Identities=10%  Similarity=0.114  Sum_probs=175.9

Q ss_pred             CCCCeeEEEEcCCCCeEEEee-C-CeEEEEEcc--CCe--EEEEecCCCCCeEEEEEcCCCCcEEEEEe-CCCcEEEEEc
Q 001163          842 PEDAVPCFALSKNDSYVMSAS-G-GKISLFNMM--TFK--TMTTFMPPPPAATFLAFHPQDNNIIAIGM-EDSSIQIYNV  914 (1134)
Q Consensus       842 h~~~v~~v~~s~dg~~la~~s-d-g~i~lwd~~--~~~--~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~dg~i~iwd~  914 (1134)
                      +...+.+++|+|+|++|++++ + +.|.+|++.  +++  .+..+..+. .+..++|+| ++++|++++ .++.|.+||+
T Consensus        36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~  113 (343)
T 1ri6_A           36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDH-QGQFVFVGSYNAGNVSVTRL  113 (343)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcC-CCCEEEEEecCCCeEEEEEC
Confidence            556788999999999888887 4 899999997  554  444555433 789999999 787776655 4889999999


Q ss_pred             ---ccceEEEeccCccCceEEEEEeeCCCEEEEEe-CCCcEEEEECCC-Cccccce--eeeecCCCCCCCCCceEEEEcC
Q 001163          915 ---RVDEVKTKLKGHQKRITGLAFSNTLNVLVSSG-ADSQLCVWSTDG-WEKQASK--FLTIPNGRTASALADTRVQFHL  987 (1134)
Q Consensus       915 ---~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~iwd~~~-~~~~~~~--~~~~~~~~~~~~~~v~~l~fs~  987 (1134)
                         .+++.+..+..+. .+.+++|+|+++++++++ .|+.|.+||+.+ ++.....  ......+     ..+..++|+|
T Consensus       114 ~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~p  187 (343)
T 1ri6_A          114 EDGLPVGVVDVVEGLD-GCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG-----AGPRHMVFHP  187 (343)
T ss_dssp             ETTEEEEEEEEECCCT-TBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT-----CCEEEEEECT
T ss_pred             CCCccccccccccCCC-CceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCC-----CCcceEEECC
Confidence               5555666666544 588999999999888877 899999999987 4422211  1222222     3578899999


Q ss_pred             CCCEEEEE--eeceEEEEeCCC--ccc--ceeec--cCCC--ccCEEEEEEccCCCEEEE-EecCCcEEEeecC--CCc-
Q 001163          988 DQTHLLAV--HETQIAIYEAPK--LEC--LKQFV--PREA--SGPITHATYSCDSQSIYV-AFEEGSVGVLTAS--TLR- 1053 (1134)
Q Consensus       988 dg~~l~~~--~d~~i~iwd~~~--~~~--~~~~~--~~~h--~~~v~~~~~s~dg~~l~s-~s~Dg~i~vwd~~--~~~- 1053 (1134)
                      ||++++++  .++.|.+|++..  ++.  .....  ..++  ...+..++|+|||++|++ +..|+.|.+||+.  +++ 
T Consensus       188 dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~  267 (343)
T 1ri6_A          188 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL  267 (343)
T ss_dssp             TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE
T ss_pred             CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCce
Confidence            99988764  578999999953  432  11111  1111  346778999999998874 4478999999998  332 


Q ss_pred             -ceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEe-cCCcEEEEeCCCCCCCccC
Q 001163         1054 -LRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGL-TDGGVYIIEPLEAEGRWGT 1110 (1134)
Q Consensus      1054 -~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~-~Dg~v~vW~~~~~~~~~~~ 1110 (1134)
                       .+..+..       + ..+..+  +|+| ++++|++++ .|+.|.+|++....+++..
T Consensus       268 ~~~~~~~~-------~-~~~~~~--~~s~-dg~~l~~~~~~~~~v~v~~~d~~~g~~~~  315 (343)
T 1ri6_A          268 SKEGFQPT-------E-TQPRGF--NVDH-SGKYLIAAGQKSHHISVYEIVGEQGLLHE  315 (343)
T ss_dssp             EEEEEEEC-------S-SSCCCE--EECT-TSSEEEEECTTTCEEEEEEEETTTTEEEE
T ss_pred             EEeeeecC-------C-CccceE--EECC-CCCEEEEecCCCCeEEEEEEcCCCceeeE
Confidence             2222221       1 124444  8889 678777777 6899999977655554443

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.87  E-value=1.2e-19  Score=203.76  Aligned_cols=274  Identities=12%  Similarity=0.137  Sum_probs=191.6

Q ss_pred             CCeEEEEEeCCCcEEEEecCC-ccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCC-CEEEEE
Q 001163          368 QQILLVVGTNMGDVMLWEVGS-RERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK-HIVHLY  445 (1134)
Q Consensus       368 g~~lla~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~d-g~v~iw  445 (1134)
                      +++++++++.|+.|.+||+.. ++.....                  ...|...+.+++|+|+|++|++++.+ +.|.+|
T Consensus         4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~   65 (343)
T 1ri6_A            4 KQTVYIASPESQQIHVWNLNHEGALTLTQ------------------VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY   65 (343)
T ss_dssp             EEEEEEEEGGGTEEEEEEECTTSCEEEEE------------------EEECSSCCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred             eEEEEEeCCCCCeEEEEEECCCCcEEEee------------------eEecCCCCceEEECCCCCEEEEeecCCCeEEEE
Confidence            345667778899999999963 3221110                  12467789999999999999998886 999999


Q ss_pred             Ecc--CCceeeeeeeeecCCCCEEEEEEecCCCceEEEEE-eCCCeEEEEECC---CCceeEEecCCCcCEEEEeccccC
Q 001163          446 TYH--GGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTC-GEDRVIKVWDAV---TGTKQYIFEGHESPVYSICPHHKE  519 (1134)
Q Consensus       446 d~~--~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~-s~d~~i~iwd~~---~~~~~~~~~~h~~~v~~~~~~~~~  519 (1134)
                      ++.  +++ ......+..+. .+.+++|+|+++  +++++ ..++.|.+||+.   +++.+..+..+ ..+.+++|++  
T Consensus        66 ~~~~~~~~-~~~~~~~~~~~-~~~~~~~s~dg~--~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~--  138 (343)
T 1ri6_A           66 RIAPDDGA-LTFAAESALPG-SLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP--  138 (343)
T ss_dssp             EECTTTCC-EEEEEEEECSS-CCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT--
T ss_pred             EecCCCCc-eeeccccccCC-CCcEEEEcCCCC--EEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECC--
Confidence            998  554 22233344444 789999999999  45444 458899999994   44555555544 3577788755  


Q ss_pred             CccEEEEec-CCCcEEEEecCC-CCcee----eecC-CCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC--CCee-
Q 001163          520 NIQFIFSTA-TDGKIKAWLYDN-LGSRV----DYDA-PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES--EGAV-  589 (1134)
Q Consensus       520 ~~~~l~s~s-~dg~i~vwd~~~-~~~~~----~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~~-  589 (1134)
                      +++++++++ .++.|++||+.. +....    .... ....+..++|+|+++++++++.   .+..|.+||+.  +++. 
T Consensus       139 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~  215 (343)
T 1ri6_A          139 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIE  215 (343)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCE
T ss_pred             CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEE
Confidence            446666666 899999999986 33221    2222 3447888999999998877652   24469999995  3433 


Q ss_pred             -EEEecCCC-----CCceEEEEEcCCCCEEEEEe-CCCeEEEEEcC--CC--ceeEEEecCCCCCCcceEEEcCCCcEEE
Q 001163          590 -KRTYHGLG-----KRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMD--NV--NLLASIDADGGLQASPCIRFNKEGILLA  658 (1134)
Q Consensus       590 -~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~--~~--~~~~~~~~~~~~~~v~~v~~sp~~~~l~  658 (1134)
                       ...+....     ...+..++|+|++++++++. .++.|.+||+.  ++  +.+..+...  . .+..++|+|+|++|+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~--~-~~~~~~~s~dg~~l~  292 (343)
T 1ri6_A          216 CVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE--T-QPRGFNVDHSGKYLI  292 (343)
T ss_dssp             EEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS--S-SCCCEEECTTSSEEE
T ss_pred             EEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC--C-ccceEEECCCCCEEE
Confidence             22332111     12456799999999888655 78999999998  33  344444432  2 378999999999888


Q ss_pred             EEE-CCCcEEEEEcc
Q 001163          659 VST-NDNGIKILANA  672 (1134)
Q Consensus       659 ~~~-~dg~i~iw~~~  672 (1134)
                      +++ .++.+.+|++.
T Consensus       293 ~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          293 AAGQKSHHISVYEIV  307 (343)
T ss_dssp             EECTTTCEEEEEEEE
T ss_pred             EecCCCCeEEEEEEc
Confidence            887 58999999665

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.86  E-value=1.6e-20  Score=205.66  Aligned_cols=257  Identities=14%  Similarity=0.127  Sum_probs=187.8

Q ss_pred             EEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccC-Cce
Q 001163          374 VGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHG-GDE  452 (1134)
Q Consensus       374 ~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~-~~~  452 (1134)
                      .++.|+.|++||+.+++...                    +..|...|.+++|+|||++|++++ ++.|++||+.+ ++.
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~   75 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP   75 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred             CCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence            45678999999999887543                    345888999999999999999987 78999999998 764


Q ss_pred             eeeeeeeecC-CCCEEEEEEecCCCceEEEEEe--CCCeEEE--EECCCCceeEEecCCCcCEEEEeccccCCccEEE-E
Q 001163          453 LRNHLEIEAH-VGSVNDLAFSYPNKQLSVVTCG--EDRVIKV--WDAVTGTKQYIFEGHESPVYSICPHHKENIQFIF-S  526 (1134)
Q Consensus       453 ~~~~~~l~~h-~~~V~~v~~s~~~~~~~l~s~s--~d~~i~i--wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s  526 (1134)
                      ..   ...+| ...+.+++|+|+++  +|++++  .++...|  ||..+++ ...+..+. .+..++|+++  ++.|+ +
T Consensus        76 ~~---~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spd--g~~l~~~  146 (297)
T 2ojh_A           76 EK---VDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPD--GKSFTYC  146 (297)
T ss_dssp             EE---CCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTT--SSEEEEE
T ss_pred             eE---eccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCC--CCEEEEE
Confidence            43   23444 46789999999999  677777  3344444  5555554 44454443 4888888654  46665 7


Q ss_pred             ecCCCcEEEEecCCC-CceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC-CCeeEEEecCCCCCceEEE
Q 001163          527 TATDGKIKAWLYDNL-GSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES-EGAVKRTYHGLGKRSVGVV  604 (1134)
Q Consensus       527 ~s~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~  604 (1134)
                      ++.|+.+++|+++.. .....+..+...+.+++|+|+++.++.++.. ++.  +.+|++. .+.....+..+.. .+..+
T Consensus       147 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-~~~--~~i~~~~~~~~~~~~~~~~~~-~~~~~  222 (297)
T 2ojh_A          147 GIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSR-TGQ--MQIWRVRVDGSSVERITDSAY-GDWFP  222 (297)
T ss_dssp             EEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECT-TSS--CEEEEEETTSSCEEECCCCSE-EEEEE
T ss_pred             ECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecC-CCC--ccEEEECCCCCCcEEEecCCc-ccCCe
Confidence            888999999997543 3344455566689999999999988877632 123  5566654 3445566665554 78889


Q ss_pred             EEcCCCCEEEEEeCC-----------CeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCC
Q 001163          605 QFDTTKNRFLAAGDE-----------FMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN  664 (1134)
Q Consensus       605 ~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg  664 (1134)
                      +|+|++++|++++.+           +.|++||+.+++........++...+.+++|+|+++.|++++.+.
T Consensus       223 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          223 HPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             EECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            999999999988765           569999999887654443223355788999999999998887654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.86  E-value=1.4e-19  Score=204.15  Aligned_cols=273  Identities=12%  Similarity=0.089  Sum_probs=203.9

Q ss_pred             cccEEEEEEecCCceeeeecc-------CCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeE
Q 001163          776 AMRVSRLIYTNSGLAILALAS-------NAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPC  848 (1134)
Q Consensus       776 ~~~i~~l~~spdg~~l~~~~~-------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~  848 (1134)
                      ...+..++|+|+|+.+++++.       ++.+.+||..                      +++......    ....+..
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~----------------------~~~~~~~~~----~~~~~~~   93 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPV----------------------TLEVTQAIH----NDLKPFG   93 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTT----------------------TCCEEEEEE----ESSCCCS
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCC----------------------CCeEEEEEe----cCCCcce
Confidence            456789999999998887774       4578777543                      333322211    1234678


Q ss_pred             EEEcCCCCeEEEee--CCeEEEEEccCCeEEEEecCCCCC---------eEEEEEcCCCCcEEEEEe--CCCcEEEEEcc
Q 001163          849 FALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMPPPPA---------ATFLAFHPQDNNIIAIGM--EDSSIQIYNVR  915 (1134)
Q Consensus       849 v~~s~dg~~la~~s--dg~i~lwd~~~~~~~~~~~~~~~~---------v~~l~~sp~~~~~la~g~--~dg~i~iwd~~  915 (1134)
                      ++|+|||++++++.  ++.|.+||..+++.+..+..+...         +.+++|+| +++++++++  .++.|.+||+.
T Consensus        94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~  172 (353)
T 3vgz_A           94 ATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGG  172 (353)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETT
T ss_pred             EEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCC
Confidence            99999999766654  689999999999998887654422         78999999 777666665  47899999999


Q ss_pred             cceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE
Q 001163          916 VDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV  995 (1134)
Q Consensus       916 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~  995 (1134)
                      +++.+..+..+...+.+++|+|++++|++++.++.|.+||+.+++...  .+..  +.......+..++|+|||++++++
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~--~~~~--~~~~~~~~~~~~~~s~dg~~l~~~  248 (353)
T 3vgz_A          173 NIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILS--RKKL--LDDGKEHFFINISLDTARQRAFIT  248 (353)
T ss_dssp             TTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEE--EEEC--CCSSSCCCEEEEEEETTTTEEEEE
T ss_pred             CCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEE--EEEc--CCCCCCcccceEEECCCCCEEEEE
Confidence            999988888666778899999999999999999999999999876332  1222  111111346789999999988874


Q ss_pred             --eeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEe-cCCcEEEeecCCCcceeecCCCcccCCCCCCCc
Q 001163          996 --HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAF-EEGSVGVLTASTLRLRCRINPTAYLPTNPSLRV 1072 (1134)
Q Consensus       996 --~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v 1072 (1134)
                        .++.|.+||..+++.+..+....    ...++|+|||+++++++ .++.|.+||+.+++.+..+...        .  
T Consensus       249 ~~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~--------~--  314 (353)
T 3vgz_A          249 DSKAAEVLVVDTRNGNILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP--------T--  314 (353)
T ss_dssp             ESSSSEEEEEETTTCCEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC--------S--
T ss_pred             eCCCCEEEEEECCCCcEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC--------C--
Confidence              44899999999999887776422    25699999999766555 6899999999999887666522        1  


Q ss_pred             eeEEEEecCCCCCEEEEEecCC
Q 001163         1073 YPLVIAGNPTDPNQFALGLTDG 1094 (1134)
Q Consensus      1073 ~~~~~~~~p~~~~~l~s~~~Dg 1094 (1134)
                      .+..++|+| |+++|+++..++
T Consensus       315 ~~~~~~~s~-dg~~l~v~~~~~  335 (353)
T 3vgz_A          315 HPNSLALSA-DGKTLYVSVKQK  335 (353)
T ss_dssp             EEEEEEECT-TSCEEEEEEECC
T ss_pred             CCCeEEEcC-CCCEEEEEEccc
Confidence            244568889 677666666553

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.85  E-value=1.8e-19  Score=201.60  Aligned_cols=278  Identities=10%  Similarity=0.065  Sum_probs=203.7

Q ss_pred             EEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCC-CEEEEEEcCCCCEEE-EEeCCCEEEEEEcc
Q 001163          371 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTA-SVNRVMWSPDGTLFG-VAYSKHIVHLYTYH  448 (1134)
Q Consensus       371 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~l~~spd~~~la-s~s~dg~v~iwd~~  448 (1134)
                      ++++++.++.|.+||+.+++.+...                  ..++.. .+.+++|+|||++++ +++.++.|.+||+.
T Consensus         3 ~~v~~~~~~~v~~~d~~~~~~~~~~------------------~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~   64 (337)
T 1pby_B            3 YILAPARPDKLVVIDTEKMAVDKVI------------------TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV   64 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEE------------------ECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             EEEEcCCCCeEEEEECCCCcEEEEE------------------EcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence            6788999999999999998766431                  112222 478899999998765 55667899999999


Q ss_pred             CCceeeeeeeeec---CCCCEEEEEEecCCCceEEEEEe------------CCCeEEEEECCCCceeEEecCCCcCEEEE
Q 001163          449 GGDELRNHLEIEA---HVGSVNDLAFSYPNKQLSVVTCG------------EDRVIKVWDAVTGTKQYIFEGHESPVYSI  513 (1134)
Q Consensus       449 ~~~~~~~~~~l~~---h~~~V~~v~~s~~~~~~~l~s~s------------~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  513 (1134)
                      +++.+... .+..   |...+.+++|+|+|+  ++++++            .++.|.+||+.+++.+..+.. ...+.++
T Consensus        65 ~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~  140 (337)
T 1pby_B           65 TGETLGRI-DLSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML  140 (337)
T ss_dssp             TCCEEEEE-ECCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred             CCCeEeeE-EcCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence            98865432 1211   223677899999998  566664            579999999999988887764 3456777


Q ss_pred             eccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCC-----------------
Q 001163          514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGE-----------------  576 (1134)
Q Consensus       514 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~-----------------  576 (1134)
                      +|++  ++++++++  ++.|.+||+.+.+....+..... ...+.|+|+++.++..+... +.                 
T Consensus       141 ~~s~--dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~  214 (337)
T 1pby_B          141 AWAR--DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESS-GVMATPFYTARKDIDPADP  214 (337)
T ss_dssp             EECT--TSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTT-TEEEEEEEEEBTTSCTTSG
T ss_pred             EECC--CCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCC-Cceeeeeeccccccccccc
Confidence            7754  45767776  68999999987766555443331 11337899998776554321 11                 


Q ss_pred             ----eEEEEEeCCCCeeEE-EecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEc
Q 001163          577 ----SYLVEWNESEGAVKR-TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFN  651 (1134)
Q Consensus       577 ----~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  651 (1134)
                          ..|.+||+.+++... .+..+. ..+..++|+|++++++++  ++.|++||+.+++.+..+...   ..+.+++|+
T Consensus       215 ~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~s  288 (337)
T 1pby_B          215 TAYRTGLLTMDLETGEMAMREVRIMD-VFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP---HSYYSVNVS  288 (337)
T ss_dssp             GGEEEEEEEEETTTCCEEEEEEEECS-SCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS---SCCCEEEEC
T ss_pred             cccccceEEEeCCCCCceEeecCCCC-CceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC---CceeeEEEC
Confidence                147899999987752 222233 367789999999999988  699999999999988887643   357899999


Q ss_pred             CCCcEEEEEECCCcEEEEEccCCceeEEEecc
Q 001163          652 KEGILLAVSTNDNGIKILANADGIRLLRTVES  683 (1134)
Q Consensus       652 p~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~  683 (1134)
                      |+|++|++++.++.|.+||+.++ .....+..
T Consensus       289 ~dg~~l~~~~~~~~i~v~d~~~~-~~~~~~~~  319 (337)
T 1pby_B          289 TDGSTVWLGGALGDLAAYDAETL-EKKGQVDL  319 (337)
T ss_dssp             TTSCEEEEESBSSEEEEEETTTC-CEEEEEEC
T ss_pred             CCCCEEEEEcCCCcEEEEECcCC-cEEEEEEc
Confidence            99999999999999999999988 45555543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.85  E-value=3.4e-19  Score=199.31  Aligned_cols=302  Identities=10%  Similarity=0.061  Sum_probs=201.6

Q ss_pred             cEEEEecCCCcEEEEecCCCCceeeecCCCC--CeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCC--
Q 001163          522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGH--SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG--  597 (1134)
Q Consensus       522 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~--  597 (1134)
                      +++++++.++.|.+||+.+.+....+.....  .+..++|+|+|+.++++...   +..|.+||+.+++.+..+....  
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~---~~~v~~~d~~~~~~~~~~~~~~~~   78 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNK---SESLVKIDLVTGETLGRIDLSTPE   78 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETT---TTEEEEEETTTCCEEEEEECCBTT
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCC---CCeEEEEECCCCCeEeeEEcCCcc
Confidence            5789999999999999988766665554332  47889999999887766532   3469999999999887776432  


Q ss_pred             --CCceEEEEEcCCCCEEEEEe------------CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECC
Q 001163          598 --KRSVGVVQFDTTKNRFLAAG------------DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND  663 (1134)
Q Consensus       598 --~~~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d  663 (1134)
                        ...+..++|+|+++++++++            .++.|.+||+.+++.+..+...   ..+.+++|+|+|++|+++  +
T Consensus        79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~--~  153 (337)
T 1pby_B           79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP---RQITMLAWARDGSKLYGL--G  153 (337)
T ss_dssp             EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC---SSCCCEEECTTSSCEEEE--S
T ss_pred             cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC---CCcceeEECCCCCEEEEe--C
Confidence              11456789999999999886            5799999999999888777642   357889999999988887  6


Q ss_pred             CcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccc
Q 001163          664 NGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKI  743 (1134)
Q Consensus       664 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  743 (1134)
                      +.|.+||+.++ .....+.......                                     ...+      .+++..++
T Consensus       154 ~~i~~~d~~~~-~~~~~~~~~~~~~-------------------------------------~~~~------s~dg~~l~  189 (337)
T 1pby_B          154 RDLHVMDPEAG-TLVEDKPIQSWEA-------------------------------------ETYA------QPDVLAVW  189 (337)
T ss_dssp             SSEEEEETTTT-EEEEEECSTTTTT-------------------------------------TTBC------CCBCCCCC
T ss_pred             CeEEEEECCCC-cEeeeeeccccCC-------------------------------------Ccee------CCCccEEe
Confidence            89999999887 3443332211000                                     0000      11111111


Q ss_pred             ccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCc
Q 001163          744 ADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQ  823 (1134)
Q Consensus       744 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~  823 (1134)
                      .....+....+                        +.......++..... .....+.+|                    
T Consensus       190 ~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~-~~~~~v~~~--------------------  224 (337)
T 1pby_B          190 NQHESSGVMAT------------------------PFYTARKDIDPADPT-AYRTGLLTM--------------------  224 (337)
T ss_dssp             CCCTTTTEEEE------------------------EEEEEBTTSCTTSGG-GEEEEEEEE--------------------
T ss_pred             eeccCCCceee------------------------eeecccccccccccc-ccccceEEE--------------------
Confidence            11111100000                        000000000000000 011134444                    


Q ss_pred             ccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEE
Q 001163          824 LWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIG  903 (1134)
Q Consensus       824 ~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g  903 (1134)
                        |+.+++.....+..  +...+..++|+|||++++++ ++.|++||+.+++.+..+.. ...+.+++|+| ++++|+++
T Consensus       225 --d~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~  297 (337)
T 1pby_B          225 --DLETGEMAMREVRI--MDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPL-PHSYYSVNVST-DGSTVWLG  297 (337)
T ss_dssp             --ETTTCCEEEEEEEE--CSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEEC-SSCCCEEEECT-TSCEEEEE
T ss_pred             --eCCCCCceEeecCC--CCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecC-CCceeeEEECC-CCCEEEEE
Confidence              44444443222222  55678899999999999888 79999999999998888763 35678999999 88888888


Q ss_pred             eCCCcEEEEEcccceEEEeccCcc
Q 001163          904 MEDSSIQIYNVRVDEVKTKLKGHQ  927 (1134)
Q Consensus       904 ~~dg~i~iwd~~~~~~~~~l~~h~  927 (1134)
                      +.++.|++||+.+++.+..+..+.
T Consensus       298 ~~~~~i~v~d~~~~~~~~~~~~~~  321 (337)
T 1pby_B          298 GALGDLAAYDAETLEKKGQVDLPG  321 (337)
T ss_dssp             SBSSEEEEEETTTCCEEEEEECGG
T ss_pred             cCCCcEEEEECcCCcEEEEEEcCC
Confidence            999999999999999888776543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.84  E-value=2.7e-19  Score=201.14  Aligned_cols=250  Identities=12%  Similarity=0.115  Sum_probs=169.0

Q ss_pred             CCCCeeEEEEcCCCCeEEEee---CCeEEEEEccCCe--EEEEecCCCCCeEEEEEcCCCCcEEEEEe-CCCcEEEEEcc
Q 001163          842 PEDAVPCFALSKNDSYVMSAS---GGKISLFNMMTFK--TMTTFMPPPPAATFLAFHPQDNNIIAIGM-EDSSIQIYNVR  915 (1134)
Q Consensus       842 h~~~v~~v~~s~dg~~la~~s---dg~i~lwd~~~~~--~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~dg~i~iwd~~  915 (1134)
                      +...+..++|+|||+++++..   ++.|++|++.+++  .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus        38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~  116 (347)
T 3hfq_A           38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA  116 (347)
T ss_dssp             ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred             ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence            345667899999999444443   3789999998766  4444455677889999999 888888777 78899999996


Q ss_pred             -cc--eEEEeccC---------ccCceEEEEEeeCCCEEEEEeCCCcEEEEECC-CCccccceeeeecCCCCCCCCCceE
Q 001163          916 -VD--EVKTKLKG---------HQKRITGLAFSNTLNVLVSSGADSQLCVWSTD-GWEKQASKFLTIPNGRTASALADTR  982 (1134)
Q Consensus       916 -~~--~~~~~l~~---------h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~  982 (1134)
                       ++  +.+..+..         +...+.+++|+|||+++++...++.|.+|++. +++...........+     ..+..
T Consensus       117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~  191 (347)
T 3hfq_A          117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRH  191 (347)
T ss_dssp             TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEE
T ss_pred             CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCce
Confidence             33  33333321         12348899999999977777778899999998 443222111222222     34678


Q ss_pred             EEEcCCCCEEEEE--eeceEEEEeCCC--cccc--eeeccCCC----ccCEEEEEEccCCCEEE-EEecCCcEEEeecCC
Q 001163          983 VQFHLDQTHLLAV--HETQIAIYEAPK--LECL--KQFVPREA----SGPITHATYSCDSQSIY-VAFEEGSVGVLTAST 1051 (1134)
Q Consensus       983 l~fs~dg~~l~~~--~d~~i~iwd~~~--~~~~--~~~~~~~h----~~~v~~~~~s~dg~~l~-s~s~Dg~i~vwd~~~ 1051 (1134)
                      ++|+|||++|+++  .++.|.+|++..  ++..  ..+.....    ...+..++|+|||++|+ +...++.|.+|++..
T Consensus       192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~  271 (347)
T 3hfq_A          192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA  271 (347)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence            9999999987774  568899999874  4432  12211110    14588999999999875 555689999999973


Q ss_pred             C---cceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEec-CCcEEEEeCCCCCCC
Q 001163         1052 L---RLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLT-DGGVYIIEPLEAEGR 1107 (1134)
Q Consensus      1052 ~---~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~-Dg~v~vW~~~~~~~~ 1107 (1134)
                      .   +.+..+.       .+...+.  .++|+| |+++|++++. ++.|.+|++....++
T Consensus       272 ~g~~~~~~~~~-------~~~~~~~--~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg~  321 (347)
T 3hfq_A          272 DGHLTLIQQIS-------TEGDFPR--DFDLDP-TEAFVVVVNQNTDNATLYARDLTSGK  321 (347)
T ss_dssp             GGCEEEEEEEE-------CSSSCCC--EEEECT-TSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred             CCcEEEeEEEe-------cCCCCcC--eEEECC-CCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence            2   2222222       1223334  448899 6887777765 489999977544443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.84  E-value=9.3e-20  Score=199.59  Aligned_cols=233  Identities=10%  Similarity=0.009  Sum_probs=173.8

Q ss_pred             CCCCeeEEEEcCCCCeEEEeeCCeEEEEEccC-CeEEEEecCCC-CCeEEEEEcCCCCcEEEEEe--CCCcEEEEEc--c
Q 001163          842 PEDAVPCFALSKNDSYVMSASGGKISLFNMMT-FKTMTTFMPPP-PAATFLAFHPQDNNIIAIGM--EDSSIQIYNV--R  915 (1134)
Q Consensus       842 h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~-~~~~~~~~~~~-~~v~~l~~sp~~~~~la~g~--~dg~i~iwd~--~  915 (1134)
                      |...+.+++|+|||++|++++++.|++||+.+ ++.......+. ..+.+++|+| ++++|++++  .++...||.+  .
T Consensus        40 ~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~  118 (297)
T 2ojh_A           40 TPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP-DGALYAISDKVEFGKSAIYLLPST  118 (297)
T ss_dssp             ESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT-TSSEEEEEECTTTSSCEEEEEETT
T ss_pred             CCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECC-CCCEEEEEEeCCCCcceEEEEECC
Confidence            67889999999999999999999999999999 88777666553 6789999999 899999988  3345555554  4


Q ss_pred             cceEEEeccCccCceEEEEEeeCCCEEE-EEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE
Q 001163          916 VDEVKTKLKGHQKRITGLAFSNTLNVLV-SSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA  994 (1134)
Q Consensus       916 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~-s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~  994 (1134)
                      +++ ...+..+. .+..++|+||++.|+ +++.|+.+++|++.....   ....+.. +.   ..+.+++|+|||++|++
T Consensus       119 ~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~---~~~~~~~-~~---~~~~~~~~s~dg~~l~~  189 (297)
T 2ojh_A          119 GGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG---VETRLTH-GE---GRNDGPDYSPDGRWIYF  189 (297)
T ss_dssp             CCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC---CEEECCC-SS---SCEEEEEECTTSSEEEE
T ss_pred             CCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCC---cceEccc-CC---CccccceECCCCCEEEE
Confidence            444 34454444 489999999999887 788899999998643211   1122222 21   45899999999998887


Q ss_pred             E--eeceEEEEeCC-CcccceeeccCCCccCEEEEEEccCCCEEEEEecC-----------CcEEEeecCCCcceeecCC
Q 001163          995 V--HETQIAIYEAP-KLECLKQFVPREASGPITHATYSCDSQSIYVAFEE-----------GSVGVLTASTLRLRCRINP 1060 (1134)
Q Consensus       995 ~--~d~~i~iwd~~-~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D-----------g~i~vwd~~~~~~~~~~~~ 1060 (1134)
                      +  .++.+++|++. .+.....+.  .|...+.+++|+|||++|++++.+           +.|.+||+.+++.......
T Consensus       190 ~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~  267 (297)
T 2ojh_A          190 NSSRTGQMQIWRVRVDGSSVERIT--DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDL  267 (297)
T ss_dssp             EECTTSSCEEEEEETTSSCEEECC--CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEE
T ss_pred             EecCCCCccEEEECCCCCCcEEEe--cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeecc
Confidence            4  47889999886 455555554  567889999999999999988876           5699999998876433221


Q ss_pred             CcccCCCCCCCceeEEEEecCCCCCEEEEEecCC
Q 001163         1061 TAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDG 1094 (1134)
Q Consensus      1061 ~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg 1094 (1134)
                           .+|...+..+  +|+| ++++|++++.|.
T Consensus       268 -----~~~~~~~~~~--~~sp-dg~~l~~~~~~~  293 (297)
T 2ojh_A          268 -----FGGQGTMNSP--NWSP-DGDEFAYVRYFP  293 (297)
T ss_dssp             -----EESTTTSCSC--CBCT-TSSEEEEEEECC
T ss_pred             -----CCCCcccccc--eECC-CCCEEEEEEecc
Confidence                 1344556666  8899 688888777664

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.84  E-value=7.6e-20  Score=227.67  Aligned_cols=328  Identities=10%  Similarity=0.074  Sum_probs=220.5

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCC-CCCcceEEEcCCCcEEEEEEC---------CCcEEEEEcc
Q 001163          603 VVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGG-LQASPCIRFNKEGILLAVSTN---------DNGIKILANA  672 (1134)
Q Consensus       603 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~sp~~~~l~~~~~---------dg~i~iw~~~  672 (1134)
                      .++|+|++. ++..+.|+.|++||..+++....+..+.. ...+.+++|||||++|++++.         ++.|++||+.
T Consensus        20 ~~~~s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQE-YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSE-EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCe-EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            578999995 45555799999999999998777754311 013789999999999998876         6788888887


Q ss_pred             CCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccc
Q 001163          673 DGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSR  752 (1134)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  752 (1134)
                      ++. ...   .                                                                     
T Consensus        99 ~g~-~~~---~---------------------------------------------------------------------  105 (719)
T 1z68_A           99 NGE-FVR---G---------------------------------------------------------------------  105 (719)
T ss_dssp             TTE-ECC---S---------------------------------------------------------------------
T ss_pred             CCc-ccc---c---------------------------------------------------------------------
Confidence            662 100   0                                                                     


Q ss_pred             eeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcc
Q 001163          753 IWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGIL  832 (1134)
Q Consensus       753 iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  832 (1134)
                                   ..       -...+..++|||||+.|+.+. ++.|++|++...                      ..
T Consensus       106 -------------~~-------l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g----------------------~~  142 (719)
T 1z68_A          106 -------------NE-------LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGD----------------------PP  142 (719)
T ss_dssp             -------------SC-------CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTS----------------------CC
T ss_pred             -------------ee-------cCcccccceECCCCCEEEEEE-CCeEEEEeCCCC----------------------Cc
Confidence                         00       012356789999999998885 779999976532                      21


Q ss_pred             cccCCCC------CCCC---------CCeeEEEEcCCCCeEEEee-CC--------------------------------
Q 001163          833 MTNDISD------TNPE---------DAVPCFALSKNDSYVMSAS-GG--------------------------------  864 (1134)
Q Consensus       833 ~~~~~~~------~~h~---------~~v~~v~~s~dg~~la~~s-dg--------------------------------  864 (1134)
                      ......+      .++.         ....+++|||||++|++++ |+                                
T Consensus       143 ~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~  222 (719)
T 1z68_A          143 FQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNP  222 (719)
T ss_dssp             EECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCC
T ss_pred             EEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCC
Confidence            1111111      0011         1225899999999999887 42                                


Q ss_pred             --eEEEEEccCCeEE--EE------ecCCCCCeEEEEEcCCCCcEEEEEeCC----CcEEEEE----cccceEEEec---
Q 001163          865 --KISLFNMMTFKTM--TT------FMPPPPAATFLAFHPQDNNIIAIGMED----SSIQIYN----VRVDEVKTKL---  923 (1134)
Q Consensus       865 --~i~lwd~~~~~~~--~~------~~~~~~~v~~l~~sp~~~~~la~g~~d----g~i~iwd----~~~~~~~~~l---  923 (1134)
                        +|++||+.+++..  ..      +.++...+..++|+| |++++++....    ..|.+||    +.+++....+   
T Consensus       223 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~  301 (719)
T 1z68_A          223 VVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHI  301 (719)
T ss_dssp             EEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEE
T ss_pred             eeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecc
Confidence              7889999887753  12      235777899999999 68887775433    2488899    8888776666   


Q ss_pred             -cCccCceE-----EEEEeeCCCEEEE--EeCCC--cEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEE
Q 001163          924 -KGHQKRIT-----GLAFSNTLNVLVS--SGADS--QLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLL  993 (1134)
Q Consensus       924 -~~h~~~V~-----~l~~s~d~~~l~s--~s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~  993 (1134)
                       .+|.+.+.     .++|+|||+.++.  +..++  .|.+||+.+++     ...+..+.    ..+..+.++ |++.|+
T Consensus       302 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-----~~~lt~~~----~~v~~~~~~-d~~~i~  371 (719)
T 1z68_A          302 EESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-----AIQITSGK----WEAINIFRV-TQDSLF  371 (719)
T ss_dssp             EECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-----CEECSCSS----SCEEEEEEE-CSSEEE
T ss_pred             cccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-----eEecccCc----eEEEEEEEE-eCCEEE
Confidence             46777776     8899999996654  44555  46667776654     12222221    236677777 888777


Q ss_pred             E-Eee-----ceEEEEeCCC--ccc-ceeec--cCCCccCEEEEEEccCCCEEEE-EecC--CcEEEeecCCCcceeec
Q 001163          994 A-VHE-----TQIAIYEAPK--LEC-LKQFV--PREASGPITHATYSCDSQSIYV-AFEE--GSVGVLTASTLRLRCRI 1058 (1134)
Q Consensus       994 ~-~~d-----~~i~iwd~~~--~~~-~~~~~--~~~h~~~v~~~~~s~dg~~l~s-~s~D--g~i~vwd~~~~~~~~~~ 1058 (1134)
                      . +.+     +.+.+|.+..  +.. ...+.  ..+|...+..+.|||||++++. ++.+  ..+.+||+.+++....+
T Consensus       372 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~  450 (719)
T 1z68_A          372 YSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKIL  450 (719)
T ss_dssp             EEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEE
T ss_pred             EEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEe
Confidence            7 443     6788887754  321 12222  1135677889999999998764 4443  46889999888754433

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.84  E-value=2e-18  Score=198.53  Aligned_cols=314  Identities=15%  Similarity=0.140  Sum_probs=198.1

Q ss_pred             cccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCC
Q 001163          776 AMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKND  855 (1134)
Q Consensus       776 ~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg  855 (1134)
                      ...++.+++++++..+++++.++ +++|+........   ........+........    +   .+...|.+++|+|+|
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~----~---~~~~~v~~l~~spdg  104 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQN---KPGDDPNKIVDKVQGLL----V---PMKFPIHHLALSCDN  104 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCC---CTTCCTTCEEECCCCEE----E---CCSSCEEEEEECTTS
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhc---ccccCcccccccCcccc----c---cCCCcccEEEEcCCC
Confidence            34578899999999999998887 8887654210000   00000000000000000    1   156789999999999


Q ss_pred             CeEE----Eee-CCeEEEEEccCC--------e---EEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceE
Q 001163          856 SYVM----SAS-GGKISLFNMMTF--------K---TMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEV  919 (1134)
Q Consensus       856 ~~la----~~s-dg~i~lwd~~~~--------~---~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~  919 (1134)
                      ++|+    +++ |++|+|||+.++        +   .+..+.+|...|.+++|+|+++.+|++++.||+|++||+.++..
T Consensus       105 ~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~  184 (434)
T 2oit_A          105 LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK  184 (434)
T ss_dssp             CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE
T ss_pred             CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc
Confidence            9999    666 899999999765        2   24556678999999999995489999999999999999999887


Q ss_pred             EEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCC-CCCCCceEEEEcCCCCEEEEE--e
Q 001163          920 KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRT-ASALADTRVQFHLDQTHLLAV--H  996 (1134)
Q Consensus       920 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~fs~dg~~l~~~--~  996 (1134)
                      +....+|...|++++|+|+|++|++|+.||+|++||+. ++..  ..+....... .....+.+++|++++.++++.  .
T Consensus       185 ~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~--~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~  261 (434)
T 2oit_A          185 VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEK--KVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA  261 (434)
T ss_dssp             EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEE--EEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred             eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccc--ccccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence            77777899999999999999999999999999999998 3321  1122111100 011368999999999988773  3


Q ss_pred             ec------eEEEEeCCCcccc-----eeecc-----CCCccCEEEEEEccCCCEEEEEec-CCcEEEeecCCCc--c-ee
Q 001163          997 ET------QIAIYEAPKLECL-----KQFVP-----REASGPITHATYSCDSQSIYVAFE-EGSVGVLTASTLR--L-RC 1056 (1134)
Q Consensus       997 d~------~i~iwd~~~~~~~-----~~~~~-----~~h~~~v~~~~~s~dg~~l~s~s~-Dg~i~vwd~~~~~--~-~~ 1056 (1134)
                      +|      .+++|++.+.+..     ..+..     .+....-..+.+-+|.+++++++. .+.|.|.......  . ..
T Consensus       262 dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~  341 (434)
T 2oit_A          262 DGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESW  341 (434)
T ss_dssp             TCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEE
T ss_pred             CCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEE
Confidence            32      3999999865321     11110     011112223334478788766654 3446666543321  1 00


Q ss_pred             ecC--CCcccCCC-CCCCceeE--EEEecCCC------------CCEEEEEecCCcEEEEeCCC
Q 001163         1057 RIN--PTAYLPTN-PSLRVYPL--VIAGNPTD------------PNQFALGLTDGGVYIIEPLE 1103 (1134)
Q Consensus      1057 ~~~--~~~~~~~~-h~~~v~~~--~~~~~p~~------------~~~l~s~~~Dg~v~vW~~~~ 1103 (1134)
                      .+.  ....+|-. .....+++  ++..+..+            .-.|.+.+.||.|..|.+-+
T Consensus       342 ~~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~  405 (434)
T 2oit_A          342 LLEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN  405 (434)
T ss_dssp             EECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred             eccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence            110  01111111 11223333  33333322            14788899999999999866

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.84  E-value=1.5e-19  Score=224.95  Aligned_cols=285  Identities=11%  Similarity=0.045  Sum_probs=189.3

Q ss_pred             EEEEEEecCCceeeeecc---------CCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccc-cCCCCCCCCCCeeE
Q 001163          779 VSRLIYTNSGLAILALAS---------NAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMT-NDISDTNPEDAVPC  848 (1134)
Q Consensus       779 i~~l~~spdg~~l~~~~~---------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~h~~~v~~  848 (1134)
                      +.+++|||||++|++++.         ++.+++|++.                      +++.+. ..     ....+..
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~----------------------~g~~~~~~~-----l~~~~~~  114 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS----------------------NGEFVRGNE-----LPRPIQY  114 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT----------------------TTEECCSSC-----CCSSBCC
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC----------------------CCcccccee-----cCccccc
Confidence            668899999999998876         6788888654                      333310 00     1245788


Q ss_pred             EEEcCCCCeEEEeeCCeEEEEEccCCeEEEEe-cCCCCCe-----------------EEEEEcCCCCcEEEEEeCCC---
Q 001163          849 FALSKNDSYVMSASGGKISLFNMMTFKTMTTF-MPPPPAA-----------------TFLAFHPQDNNIIAIGMEDS---  907 (1134)
Q Consensus       849 v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~-~~~~~~v-----------------~~l~~sp~~~~~la~g~~dg---  907 (1134)
                      ++|||||+.||.+.++.|++||+.+++..... .++...+                 .+++||| ||++||+++.|.   
T Consensus       115 ~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~  193 (719)
T 1z68_A          115 LCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDI  193 (719)
T ss_dssp             EEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTS
T ss_pred             ceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCC
Confidence            99999999999999999999999888775433 2222222                 4899999 899999887652   


Q ss_pred             -------------------------------cEEEEEcccceEE--------EeccCccCceEEEEEeeCCCEEEEEeCC
Q 001163          908 -------------------------------SIQIYNVRVDEVK--------TKLKGHQKRITGLAFSNTLNVLVSSGAD  948 (1134)
Q Consensus       908 -------------------------------~i~iwd~~~~~~~--------~~l~~h~~~V~~l~~s~d~~~l~s~s~D  948 (1134)
                                                     .|++||+.+++..        ..+.+|...+..++||||++++++....
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~  273 (719)
T 1z68_A          194 PVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKR  273 (719)
T ss_dssp             CEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEES
T ss_pred             ceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEecc
Confidence                                           7889999987642        2245688899999999998877775433


Q ss_pred             C----cEEEEE----CCCCccccceeeeecCCCCCCCCCce-----EEEEcCCCCEEEE--E-ee--ceEEEEeCCCccc
Q 001163          949 S----QLCVWS----TDGWEKQASKFLTIPNGRTASALADT-----RVQFHLDQTHLLA--V-HE--TQIAIYEAPKLEC 1010 (1134)
Q Consensus       949 g----~i~iwd----~~~~~~~~~~~~~~~~~~~~~~~~v~-----~l~fs~dg~~l~~--~-~d--~~i~iwd~~~~~~ 1010 (1134)
                      +    .|.+||    +.+++...... ....++.   ..+.     .++|+|||+.++.  + .+  ..|.+||+.+++ 
T Consensus       274 ~~~~~~l~~~d~~~~~~~g~~~~~~~-~~~~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-  348 (719)
T 1z68_A          274 VQNVSVLSICDFREDWQTWDCPKTQE-HIEESRT---GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-  348 (719)
T ss_dssp             STTEEEEEEEEECSSSSSEECCGGGE-EEEECSS---SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-
T ss_pred             ccCeEEEEEEcccCCCCCCceEEEEe-cccccCC---ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-
Confidence            2    488899    77765332110 0001222   2233     7899999997665  2 22  368888887766 


Q ss_pred             ceeeccCCCccCEEEEEEccCCCEEEEEecC-----CcEEEeecCC--Ccc-eeecCCCcccCCCCCCCceeEEEEecCC
Q 001163         1011 LKQFVPREASGPITHATYSCDSQSIYVAFEE-----GSVGVLTAST--LRL-RCRINPTAYLPTNPSLRVYPLVIAGNPT 1082 (1134)
Q Consensus      1011 ~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D-----g~i~vwd~~~--~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~p~ 1082 (1134)
                      ...+.  .+...+..+.++ ||+.|+..+.+     +.+.+|.+..  +.. ...+...   ..+|...+..+  +|+| 
T Consensus       349 ~~~lt--~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~---~~~~~~~~~~~--~~s~-  419 (719)
T 1z68_A          349 AIQIT--SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCH---LRKERCQYYTA--SFSD-  419 (719)
T ss_dssp             CEECS--CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTT---TTTTTBCBEEE--EECG-
T ss_pred             eEecc--cCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCc---cCCCCCceEEE--EECC-
Confidence            33443  445678888888 88887766654     8899998764  421 1222210   11244455554  7888 


Q ss_pred             CCCEEE-EEecC--CcEEEEeCCCCC
Q 001163         1083 DPNQFA-LGLTD--GGVYIIEPLEAE 1105 (1134)
Q Consensus      1083 ~~~~l~-s~~~D--g~v~vW~~~~~~ 1105 (1134)
                      |+++++ +++.+  ..+.+|++.+.+
T Consensus       420 dg~~l~~~~s~~~~p~~~l~d~~~g~  445 (719)
T 1z68_A          420 YAKYYALVCYGPGIPISTLHDGRTDQ  445 (719)
T ss_dssp             GGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred             CCCEEEEEcCCCCCCeEEEEECCCCC
Confidence            455555 45544  467888876544

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.83  E-value=1.5e-19  Score=218.77  Aligned_cols=272  Identities=15%  Similarity=0.051  Sum_probs=196.4

Q ss_pred             CCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCC-CCEEEEEEcCCCCEEE
Q 001163          356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT-ASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       356 ~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spd~~~la  434 (1134)
                      ...|++++|||||++|+.++..||++.||++.+++...                    +..|. ..|.+++|||| ++++
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~l~   79 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RVIL   79 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EEEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eEEE
Confidence            45799999999999765444459999999997665433                    34444 68999999999 7888


Q ss_pred             EEeC---CCEEEEEEccC--CceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcC
Q 001163          435 VAYS---KHIVHLYTYHG--GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESP  509 (1134)
Q Consensus       435 s~s~---dg~v~iwd~~~--~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~  509 (1134)
                      +++.   +....||.+..  .....   .+..+. .+...+|+|||+.+++++++.|+.. +||+.+++.......+.  
T Consensus        80 ~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~~--  152 (582)
T 3o4h_A           80 VRDVSKGAEQHALFKVNTSRPGEEQ---RLEAVK-PMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELARLPG--  152 (582)
T ss_dssp             EEECSTTSCCEEEEEEETTSTTCCE---ECTTSC-SBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEEESS--
T ss_pred             EeccCCCCcceEEEEEeccCCCccc---cccCCC-CceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeecCCC--
Confidence            7765   45566766543  22122   122222 3446799999987566666665554 99999987766554333  


Q ss_pred             EEEEeccccCCccEEEEecCC----CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC
Q 001163          510 VYSICPHHKENIQFIFSTATD----GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES  585 (1134)
Q Consensus       510 v~~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~  585 (1134)
                       .+++|+|  ||++|++++.+    +.|++||+.+++.. .+..+...+..++|+|||+.|+++..  ++...|++||+.
T Consensus       153 -~~~~~sp--DG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~~  226 (582)
T 3o4h_A          153 -FGFVSDI--RGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDPR  226 (582)
T ss_dssp             -CEEEEEE--ETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECTT
T ss_pred             -ceEEECC--CCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcCC
Confidence             5666654  56899988777    78999998876654 55666678899999999999995443  345579999999


Q ss_pred             CCeeEEEecCCCCCceEEEE--------EcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEE
Q 001163          586 EGAVKRTYHGLGKRSVGVVQ--------FDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILL  657 (1134)
Q Consensus       586 ~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l  657 (1134)
                      +++.. .+..+.. .+..++        |+|||..+++++.+|.+++|++  ++....   .  ...+.+++|+ +++++
T Consensus       227 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~--~~~v~~~~~s-dg~~l  296 (582)
T 3o4h_A          227 DGSVE-DLELPSK-DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---P--QGNHGRVVLW-RGKLV  296 (582)
T ss_dssp             TCCEE-ECCCSCS-HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---C--SSEEEEEEEE-TTEEE
T ss_pred             CCcEE-EccCCCc-ChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---C--CCceEEEEec-CCEEE
Confidence            99887 6666544 555556        9999988889999999999999  655441   1  3467899999 99999


Q ss_pred             EEEECCCc---EEEEEc
Q 001163          658 AVSTNDNG---IKILAN  671 (1134)
Q Consensus       658 ~~~~~dg~---i~iw~~  671 (1134)
                      ++++.+..   +.+|+.
T Consensus       297 ~~~s~~~~p~~l~~~d~  313 (582)
T 3o4h_A          297 TSHTSLSTPPRIVSLPS  313 (582)
T ss_dssp             EEEEETTEEEEEEEETT
T ss_pred             EEEcCCCCCCeEEEEcC
Confidence            88887744   555544

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.83  E-value=1.1e-18  Score=200.83  Aligned_cols=261  Identities=11%  Similarity=0.048  Sum_probs=177.1

Q ss_pred             CCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE-
Q 001163          356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG-  434 (1134)
Q Consensus       356 ~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la-  434 (1134)
                      ...++.+++++++. ++++|+.|+ |+||+...........   .+.. ............|...|.+++|+|+|++|| 
T Consensus        36 ~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~v~~l~~spdg~~lav  109 (434)
T 2oit_A           36 KERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPG---DDPN-KIVDKVQGLLVPMKFPIHHLALSCDNLTLSA  109 (434)
T ss_dssp             CSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTT---CCTT-CEEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred             CCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccc---cCcc-cccccCccccccCCCcccEEEEcCCCCEEEE
Confidence            34688999999998 557788887 8998864321100000   0000 000000011124677899999999999999 


Q ss_pred             ---EEeCCCEEEEEEccCC--------ceeeeeeeeecCCCCEEEEEEecC-CCceEEEEEeCCCeEEEEECCCCceeEE
Q 001163          435 ---VAYSKHIVHLYTYHGG--------DELRNHLEIEAHVGSVNDLAFSYP-NKQLSVVTCGEDRVIKVWDAVTGTKQYI  502 (1134)
Q Consensus       435 ---s~s~dg~v~iwd~~~~--------~~~~~~~~l~~h~~~V~~v~~s~~-~~~~~l~s~s~d~~i~iwd~~~~~~~~~  502 (1134)
                         +|+.|+.|+|||+.++        +.+.....+.+|...|.+++|+|+ +.  +|++++.|++|++||++++..+..
T Consensus       110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~  187 (434)
T 2oit_A          110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCA  187 (434)
T ss_dssp             EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred             EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceee
Confidence               7888999999999765        222233457789999999999998 55  799999999999999999988777


Q ss_pred             ecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCC-------CCCeeEEEECcCCCEEEEEecCC--
Q 001163          503 FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP-------GHSSTMMAYSADGARLFSCGTNK--  573 (1134)
Q Consensus       503 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~~~--  573 (1134)
                      ..+|...|.+++|+++  |.+|++|+.||.|++||++ ......+..+       ...+.+++|++++.++++.+...  
T Consensus       188 ~~~~~~~v~~v~wspd--g~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~  264 (434)
T 2oit_A          188 TLPSTVAVTSVCWSPK--GKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT  264 (434)
T ss_dssp             EECGGGCEEEEEECTT--SSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred             ccCCCCceeEEEEcCC--CCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence            7889999999999765  5899999999999999988 4444333322       12789999999888876654321  


Q ss_pred             -CCCeEEEEEeCCCCe-----eEEEec-------CCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcC
Q 001163          574 -EGESYLVEWNESEGA-----VKRTYH-------GLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMD  628 (1134)
Q Consensus       574 -~~~~~i~~wd~~~~~-----~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~  628 (1134)
                       .....+++|++...+     ....+.       +... ....+.+-++.+.+++++ ..+.|.+....
T Consensus       265 ~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~  332 (434)
T 2oit_A          265 LETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQ-HHYYLSYIEEWDLVLAASAASTEVSILARQ  332 (434)
T ss_dssp             SSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSC-CCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred             cCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcC-cceeeehhccCCEEEEecCCCCceeEEEec
Confidence             112358999987642     112221       1111 222333446777777766 45556666543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.82  E-value=8.8e-19  Score=211.97  Aligned_cols=237  Identities=15%  Similarity=0.156  Sum_probs=177.3

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeC-CCEEEEEEccCCceeeeeeeeecCC-CCEEEEEEecCCCceEEEEEeC---CCeEEE
Q 001163          417 YTASVNRVMWSPDGTLFGVAYS-KHIVHLYTYHGGDELRNHLEIEAHV-GSVNDLAFSYPNKQLSVVTCGE---DRVIKV  491 (1134)
Q Consensus       417 h~~~V~~l~~spd~~~las~s~-dg~v~iwd~~~~~~~~~~~~l~~h~-~~V~~v~~s~~~~~~~l~s~s~---d~~i~i  491 (1134)
                      +..+|++++|+|||++||+++. ||+++||++.+++..+    +..|. ..+..++|+|| +  ++++++.   +....+
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~----lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l   92 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK----LNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHAL   92 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE----CCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEE
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe----eecccccccccccCCCC-e--EEEEeccCCCCcceEE
Confidence            4568999999999999999887 9999999997776432    45555 68999999998 5  6777765   455566


Q ss_pred             EECCC---CceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEE
Q 001163          492 WDAVT---GTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFS  568 (1134)
Q Consensus       492 wd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  568 (1134)
                      |.+..   +... .+..+. .+...+|++++++..+++++.++.. +||+.+++.......+.   .+++|+|||++|++
T Consensus        93 ~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~  166 (582)
T 3o4h_A           93 FKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELARLPG---FGFVSDIRGDLIAG  166 (582)
T ss_dssp             EEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEEESS---CEEEEEEETTEEEE
T ss_pred             EEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeecCCC---ceEEECCCCCEEEE
Confidence            54432   3333 343222 2345677777765566666665554 99998765544433222   78999999999998


Q ss_pred             EecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCC--eEEEEEcCCCceeEEEecCCCCCCcc
Q 001163          569 CGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF--MIKFWDMDNVNLLASIDADGGLQASP  646 (1134)
Q Consensus       569 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~  646 (1134)
                      ++.+..+...|++||+.+++.. .+..+.. .+..++|+|||+.|+++..++  .|++||+.+++.. .+..+  ...+.
T Consensus       167 ~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~--~~~~~  241 (582)
T 3o4h_A          167 LGFFGGGRVSLFTSNLSSGGLR-VFDSGEG-SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP--SKDFS  241 (582)
T ss_dssp             EEEEETTEEEEEEEETTTCCCE-EECCSSC-EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS--CSHHH
T ss_pred             EEEcCCCCeEEEEEcCCCCCce-EeecCCC-ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC--CcChh
Confidence            8766444467999999988765 4555554 788999999999999888888  8999999998877 54433  44566


Q ss_pred             eEE--------EcCCCcEEEEEECCCcEEEEEc
Q 001163          647 CIR--------FNKEGILLAVSTNDNGIKILAN  671 (1134)
Q Consensus       647 ~v~--------~sp~~~~l~~~~~dg~i~iw~~  671 (1134)
                      .++        |+|||.++++++.++.+++|++
T Consensus       242 ~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          242 SYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             HHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             hhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            677        9999999999999999999997

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.81  E-value=4.3e-17  Score=183.06  Aligned_cols=246  Identities=10%  Similarity=0.097  Sum_probs=171.4

Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeC---CCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEe-CCCeEEE
Q 001163          416 DYTASVNRVMWSPDGTLFGVAYS---KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-EDRVIKV  491 (1134)
Q Consensus       416 ~h~~~V~~l~~spd~~~las~s~---dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s-~d~~i~i  491 (1134)
                      .+...+..++|+|||+ |++++.   ++.|.+||+.+++. +....+..+...+..++|+|||+  +|++++ .++.|.+
T Consensus        37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-~~~~~~~~~~~~p~~~a~spdg~--~l~~~~~~~~~v~v  112 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-HKLNTVVAPGTPPAYVAVDEARQ--LVYSANYHKGTAEV  112 (347)
T ss_dssp             EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-EEEEEEEEESCCCSEEEEETTTT--EEEEEETTTTEEEE
T ss_pred             eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-EEeeeeecCCCCCEEEEECCCCC--EEEEEeCCCCEEEE
Confidence            3556788899999999 555543   68999999987763 33334556778899999999999  566666 7899999


Q ss_pred             EECC-CCc--eeEEecC---------CCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceee---ecC-CCCCee
Q 001163          492 WDAV-TGT--KQYIFEG---------HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD---YDA-PGHSST  555 (1134)
Q Consensus       492 wd~~-~~~--~~~~~~~---------h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~---~~~-~~~~v~  555 (1134)
                      ||+. ++.  .+..+..         +...+.+++|+++  |+++++...++.|++|++...+....   ... ......
T Consensus       113 ~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spd--g~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~  190 (347)
T 3hfq_A          113 MKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPD--NRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPR  190 (347)
T ss_dssp             EEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTT--SCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEE
T ss_pred             EEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCC--CcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCc
Confidence            9996 332  3333322         1234788888654  46777777889999999983332221   122 233677


Q ss_pred             EEEECcCCCEEEEEecCCCCCeEEEEEeCCC--Cee--EEEecCCCC-----CceEEEEEcCCCCEEEE-EeCCCeEEEE
Q 001163          556 MMAYSADGARLFSCGTNKEGESYLVEWNESE--GAV--KRTYHGLGK-----RSVGVVQFDTTKNRFLA-AGDEFMIKFW  625 (1134)
Q Consensus       556 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--~~~--~~~~~~~~~-----~~v~~~~~~~~~~~l~~-~~~dg~i~iw  625 (1134)
                      .++|+|||++++++..   ....+.+|++..  ++.  +..+.....     ..+..++|+|+|++|++ ...++.|.+|
T Consensus       191 ~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~  267 (347)
T 3hfq_A          191 HLVFSPDGQYAFLAGE---LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVF  267 (347)
T ss_dssp             EEEECTTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEE
T ss_pred             eEEECCCCCEEEEEeC---CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEE
Confidence            8999999998877653   234688888763  543  233333221     24788999999998855 4578999999


Q ss_pred             EcCCC---ceeEEEecCCCCCCcceEEEcCCCcEEEEEECC-CcEEEEEcc
Q 001163          626 DMDNV---NLLASIDADGGLQASPCIRFNKEGILLAVSTND-NGIKILANA  672 (1134)
Q Consensus       626 d~~~~---~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d-g~i~iw~~~  672 (1134)
                      ++...   +.+..+..+  ...+..++|+|+|++|++++.+ +.+.+|++.
T Consensus       268 ~~~~~g~~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          268 AVTADGHLTLIQQISTE--GDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             EECGGGCEEEEEEEECS--SSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EECCCCcEEEeEEEecC--CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            99732   344444433  3457899999999988888764 899999554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.81  E-value=6.9e-18  Score=209.67  Aligned_cols=275  Identities=13%  Similarity=0.089  Sum_probs=184.3

Q ss_pred             CeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCC-----CCEEEEEEcCCCCE
Q 001163          358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT-----ASVNRVMWSPDGTL  432 (1134)
Q Consensus       358 ~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~V~~l~~spd~~~  432 (1134)
                      ...+++|+|||+ +++++  ||+|++||+.+++....                   +.+|.     .....++|||||++
T Consensus        18 ~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~Spdg~~   75 (740)
T 4a5s_A           18 KLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSVF-------------------LENSTFDEFGHSINDYSISPDGQF   75 (740)
T ss_dssp             CCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEEE-------------------ECTTTTTTCCSCCCEEEECTTSSE
T ss_pred             cccccEECCCCc-EEEEc--CCcEEEEECCCCceEEE-------------------EechhhhhhcccccceEECCCCCE
Confidence            355899999997 55665  99999999999875432                   23333     23345899999999


Q ss_pred             EEEEeCC---------CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEE-
Q 001163          433 FGVAYSK---------HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI-  502 (1134)
Q Consensus       433 las~s~d---------g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~-  502 (1134)
                      |++++.+         +.+.+||+.+++..    .+..|.+.+..++|||||+  .|+.+ .|+.|++||+.+++..+. 
T Consensus        76 l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~----~l~~~~~~~~~~~~SPdG~--~la~~-~~~~i~~~~~~~~~~~~lt  148 (740)
T 4a5s_A           76 ILLEYNYVKQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYV-WNNDIYVKIEPNLPSYRIT  148 (740)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEE-ETTEEEEESSTTSCCEECC
T ss_pred             EEEEECCeeeEEEccceEEEEEECCCCcEE----EcccCCCcceeeEECCCCC--EEEEE-ECCeEEEEECCCCceEEEc
Confidence            9999886         56679999998744    3667888999999999999  46666 468999999988876542 


Q ss_pred             ecCCCcCE-----------------EEEeccccCCccEEEEecCCCc-EEEEecCCCCceeeecCCCCCeeEEEECcCCC
Q 001163          503 FEGHESPV-----------------YSICPHHKENIQFIFSTATDGK-IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGA  564 (1134)
Q Consensus       503 ~~~h~~~v-----------------~~~~~~~~~~~~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~  564 (1134)
                      ..++...+                 ..+.|  ++||+.|+.++.|.+ +.+|++.......   .+...+..+.+.+.|.
T Consensus       149 ~~g~~~~~~~g~~~~v~~ee~~~~~~~~~w--SpDg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G~  223 (740)
T 4a5s_A          149 WTGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAGA  223 (740)
T ss_dssp             SCCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTTS
T ss_pred             CCCCccceecCcccccccchhcCCCcceEE--CCCCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCcC
Confidence            23343333                 23566  456688888776554 8888764322111   1233566777777764


Q ss_pred             EEEEEecCCCCCeEEEEEeCCC---Ce--eEEEecC-----CCCCceEEEEEcCCCCEEEEEe----CCCeEEEEEcCCC
Q 001163          565 RLFSCGTNKEGESYLVEWNESE---GA--VKRTYHG-----LGKRSVGVVQFDTTKNRFLAAG----DEFMIKFWDMDNV  630 (1134)
Q Consensus       565 ~l~~~~~~~~~~~~i~~wd~~~---~~--~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~  630 (1134)
                      .        .....|++||+.+   ++  ....+..     .+...+..++|+|||+.++...    .+..|++||+.++
T Consensus       224 ~--------~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg  295 (740)
T 4a5s_A          224 V--------NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDES  295 (740)
T ss_dssp             C--------CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETT
T ss_pred             c--------CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCC
Confidence            3        2234599999998   73  2223332     1233688999999998766654    2347999999988


Q ss_pred             c----e--eEEEecCCCCCCc-----ceEEEcCCCcEEE-EEEC-CC--cEEEEEccCC
Q 001163          631 N----L--LASIDADGGLQAS-----PCIRFNKEGILLA-VSTN-DN--GIKILANADG  674 (1134)
Q Consensus       631 ~----~--~~~~~~~~~~~~v-----~~v~~sp~~~~l~-~~~~-dg--~i~iw~~~~~  674 (1134)
                      +    +  +..+...++...+     ...+|+|||+.++ ..+. +|  .|++|+..++
T Consensus       296 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~  354 (740)
T 4a5s_A          296 SGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK  354 (740)
T ss_dssp             TTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred             ccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence            7    1  1222111223333     3789999999877 6654 44  4666665543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.80  E-value=9e-18  Score=191.98  Aligned_cols=297  Identities=10%  Similarity=0.003  Sum_probs=195.2

Q ss_pred             EEEee-cCCCeeE-----EEEcCCCCeEEEEEeCCC--cEEEEecCCccceeeeceeeeeccccCccccccccccCCCCE
Q 001163          350 VMTLN-QGSAVKS-----MDFHPVQQILLVVGTNMG--DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASV  421 (1134)
Q Consensus       350 ~~~~~-h~~~V~~-----v~fsp~g~~lla~gs~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  421 (1134)
                      ...+. +......     .+|||||++|++++..+|  .|.+||+.+++....                   ..++...+
T Consensus        23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l-------------------t~~~~~~~   83 (388)
T 3pe7_A           23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL-------------------TEGRGDNT   83 (388)
T ss_dssp             EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC-------------------CCSSCBCS
T ss_pred             eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe-------------------eeCCCCCc
Confidence            34444 4444555     899999998766655577  488889988875442                   34565566


Q ss_pred             EEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEE--EecCCCceEEEE-----------------
Q 001163          422 NRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLA--FSYPNKQLSVVT-----------------  482 (1134)
Q Consensus       422 ~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~--~s~~~~~~~l~s-----------------  482 (1134)
                      ..++|||||++|+.++.++.|++||+.+++...   ....+...+....  ++++++  +++.                 
T Consensus        84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~~~~~~  158 (388)
T 3pe7_A           84 FGGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLTDWKKF  158 (388)
T ss_dssp             SSCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCCSHHHH
T ss_pred             cceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCcccccccccchh
Confidence            678899999999999999999999999987543   2344555554444  488998  4543                 


Q ss_pred             -----EeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCC------CcEEEEecCCCCceeeecCCC
Q 001163          483 -----CGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATD------GKIKAWLYDNLGSRVDYDAPG  551 (1134)
Q Consensus       483 -----~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~  551 (1134)
                           .+.+..|.+||+.+++... +..+...+..+.|+|. +|..|+..+.+      ..|.++|..............
T Consensus       159 ~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~  236 (388)
T 3pe7_A          159 HEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAE  236 (388)
T ss_dssp             HHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCT
T ss_pred             hhhhccCCcceEEEEECCCCceEE-eecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCC
Confidence                 2345789999999987544 4446677888888651 44777666543      367777776544433332222


Q ss_pred             -CCeeEEEECcCCCEEEEEecCC-CCCeEEEEEeCCCCeeEE--EecCCCC--CceEEEEEcCCCCEEEEE---------
Q 001163          552 -HSSTMMAYSADGARLFSCGTNK-EGESYLVEWNESEGAVKR--TYHGLGK--RSVGVVQFDTTKNRFLAA---------  616 (1134)
Q Consensus       552 -~~v~~~~~s~~~~~l~~~~~~~-~~~~~i~~wd~~~~~~~~--~~~~~~~--~~v~~~~~~~~~~~l~~~---------  616 (1134)
                       ..+..++|+|||+.|+..+... .....|++||+.+++...  .+.++..  .......|+|||+.|+..         
T Consensus       237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~  316 (388)
T 3pe7_A          237 GESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKI  316 (388)
T ss_dssp             TEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------
T ss_pred             CcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecccccc
Confidence             2577889999999887765432 223359999999987433  3332100  001123699999888754         


Q ss_pred             eCCCeEEEEEcCCCceeEEEecCCCC--------CCcceEEEcCCCcEEEEEEC-CCcEEEEEcc
Q 001163          617 GDEFMIKFWDMDNVNLLASIDADGGL--------QASPCIRFNKEGILLAVSTN-DNGIKILANA  672 (1134)
Q Consensus       617 ~~dg~i~iwd~~~~~~~~~~~~~~~~--------~~v~~v~~sp~~~~l~~~~~-dg~i~iw~~~  672 (1134)
                      ..+..|++||+.+++...........        ..+.+++|+|||+.|+..+. +|...||.+.
T Consensus       317 ~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          317 ENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             CCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence            45668999999988764433322100        14678899999998887664 6777777653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.80  E-value=1.3e-17  Score=187.42  Aligned_cols=283  Identities=11%  Similarity=0.058  Sum_probs=190.8

Q ss_pred             EEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE-EEeCC
Q 001163          361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG-VAYSK  439 (1134)
Q Consensus       361 ~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la-s~s~d  439 (1134)
                      .++++++++ ++++++.++.|.+||+.+++.+....                  .+....+..++|+|||++++ ++..+
T Consensus         4 g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~------------------~~~~~~~~~~~~s~dg~~~~v~~~~~   64 (349)
T 1jmx_B            4 GPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCV------------------MPDKFGPGTAMMAPDNRTAYVLNNHY   64 (349)
T ss_dssp             CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEEEE------------------CSSCCSSCEEEECTTSSEEEEEETTT
T ss_pred             cccccCCCE-EEEEeCCCCeEEEEECCCCcEEEEEe------------------cCCCCCCceeEECCCCCEEEEEeCCC
Confidence            456777776 67889999999999999987654311                  11222577899999999665 45578


Q ss_pred             CEEEEEEccCCceeeeeeeee-cC-----CCCEEEEEEecCCCceEEEEEeCC------------CeEEEEECCCCce--
Q 001163          440 HIVHLYTYHGGDELRNHLEIE-AH-----VGSVNDLAFSYPNKQLSVVTCGED------------RVIKVWDAVTGTK--  499 (1134)
Q Consensus       440 g~v~iwd~~~~~~~~~~~~l~-~h-----~~~V~~v~~s~~~~~~~l~s~s~d------------~~i~iwd~~~~~~--  499 (1134)
                      +.|.+||+.+++....   +. .+     ...+.+++|+|||+  ++++++.+            +.|.+||+.+++.  
T Consensus        65 ~~i~~~d~~t~~~~~~---~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  139 (349)
T 1jmx_B           65 GDIYGIDLDTCKNTFH---ANLSSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK  139 (349)
T ss_dssp             TEEEEEETTTTEEEEE---EESCCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC
T ss_pred             CcEEEEeCCCCcEEEE---EEcccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCccccc
Confidence            9999999999876542   32 22     23478899999999  67777654            8999999988543  


Q ss_pred             -eEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCC------------------------Ce
Q 001163          500 -QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH------------------------SS  554 (1134)
Q Consensus       500 -~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~------------------------~v  554 (1134)
                       +..+.. ...+.+++|++  +|. +++++.  .|.+||+.+.+....+.....                        ..
T Consensus       140 ~~~~~~~-~~~~~~~~~s~--dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (349)
T 1jmx_B          140 PVRTFPM-PRQVYLMRAAD--DGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML  213 (349)
T ss_dssp             CSEEEEC-CSSCCCEEECT--TSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEE
T ss_pred             eeeeccC-CCcccceeECC--CCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEee
Confidence             334443 33577787755  446 555543  499999987766554433210                        22


Q ss_pred             eEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEE-EecCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCce
Q 001163          555 TMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKR-TYHGLGKRSVGVVQFDT-TKNRFLAAGDEFMIKFWDMDNVNL  632 (1134)
Q Consensus       555 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~  632 (1134)
                      ..+++++++.......   .....+..+|..+++... .+.. ....+..++|+| ++++++++  ++.|++||+.+++.
T Consensus       214 ~~~~~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~  287 (349)
T 1jmx_B          214 YTIARFKDDKQDPATA---DLLYGYLSVDLKTGKTHTQEFAD-LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKL  287 (349)
T ss_dssp             EEEEEC-------CCC---EEEEEEEEEETTTCCEEEEEEEE-CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEE
T ss_pred             eeeeecCCCcCCcccc---ccceeEEEEeccCCcEEeccccc-CCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeE
Confidence            3455555543221110   011123346666654322 1222 223678899999 99999888  88999999999998


Q ss_pred             eEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEecc
Q 001163          633 LASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVES  683 (1134)
Q Consensus       633 ~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~  683 (1134)
                      +..+...   ..+.+++|+|+|++|++++.++.|.+||..++ +.+..+..
T Consensus       288 ~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~-~~~~~~~~  334 (349)
T 1jmx_B          288 IKAANLD---HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL-EKVKNIKL  334 (349)
T ss_dssp             EEEEECS---SCCCEEEECSSSSCEEEESBSSEEEEEETTTT-EEEEEEEC
T ss_pred             EEEEcCC---CCccceEECCCCCEEEEecCCCeEEEEecccc-ceeeeeec
Confidence            8887643   24679999999998888888999999999887 55555543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.80  E-value=1.3e-16  Score=180.12  Aligned_cols=308  Identities=11%  Similarity=0.079  Sum_probs=191.7

Q ss_pred             CCEEEEEe----CCCeEEEEEc--CCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECC----CcEEEEEccCCceeEE
Q 001163          610 KNRFLAAG----DEFMIKFWDM--DNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND----NGIKILANADGIRLLR  679 (1134)
Q Consensus       610 ~~~l~~~~----~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d----g~i~iw~~~~~~~~~~  679 (1134)
                      ..+++.|+    .++.|++|++  .+++.......  +...+..++|+|+|++|++++.+    +.+.+|++......+.
T Consensus        13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~   90 (361)
T 3scy_A           13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH   90 (361)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred             ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence            34555664    4578999876  45654433322  24467789999999999998886    7999998765311111


Q ss_pred             EeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeeccc
Q 001163          680 TVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEI  759 (1134)
Q Consensus       680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~  759 (1134)
                      .+..                                                                        ..  
T Consensus        91 ~~~~------------------------------------------------------------------------~~--   96 (361)
T 3scy_A           91 LLNT------------------------------------------------------------------------QK--   96 (361)
T ss_dssp             EEEE------------------------------------------------------------------------EE--
T ss_pred             EeeE------------------------------------------------------------------------ec--
Confidence            1100                                                                        00  


Q ss_pred             CCccceeccccCCccccccEEEEEEecCCceeeeec-cCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCC
Q 001163          760 TEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALA-SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDIS  838 (1134)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  838 (1134)
                                    .+......+++  +|+++++++ .++.+.+|++.....     ...... .+.....+...   ..
T Consensus        97 --------------~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~-----~~~~~~-~~~~~g~~~~~---~~  151 (361)
T 3scy_A           97 --------------TMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGA-----LLPASD-VIEFKGSGPDK---ER  151 (361)
T ss_dssp             --------------CSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSC-----BCSCSE-EEECCCCCSCT---TT
T ss_pred             --------------cCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCc-----Ccccce-eEEccCCCCCc---cc
Confidence                          01233455666  777776665 578999998863211     000000 00000000000   00


Q ss_pred             CCCCCCCeeEEEEcCCCCeEEEee--CCeEEEEEccCCe-------E------EEEecCCCCCeEEEEEcCCCCcEEEEE
Q 001163          839 DTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFK-------T------MTTFMPPPPAATFLAFHPQDNNIIAIG  903 (1134)
Q Consensus       839 ~~~h~~~v~~v~~s~dg~~la~~s--dg~i~lwd~~~~~-------~------~~~~~~~~~~v~~l~~sp~~~~~la~g  903 (1134)
                        .+...+.+++|+|||+++++++  ++.|++|++....       .      ......+......++|+| ++++++++
T Consensus       152 --~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~  228 (361)
T 3scy_A          152 --QTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLI  228 (361)
T ss_dssp             --CSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEE
T ss_pred             --cCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEEEE
Confidence              1344578899999999777665  6899999886433       1      122233455688999999 88877776


Q ss_pred             e-CCCcEEEEEcccceE--EEe---ccCccCceEEEEEeeCCCEEEEEeC--CCcEEEEECC--CCccccceeeeecCCC
Q 001163          904 M-EDSSIQIYNVRVDEV--KTK---LKGHQKRITGLAFSNTLNVLVSSGA--DSQLCVWSTD--GWEKQASKFLTIPNGR  973 (1134)
Q Consensus       904 ~-~dg~i~iwd~~~~~~--~~~---l~~h~~~V~~l~~s~d~~~l~s~s~--Dg~i~iwd~~--~~~~~~~~~~~~~~~~  973 (1134)
                      + .++.|.+|++.+++.  +..   ...+.....+++|+|||++|+++..  ++.|.+|++.  +++......  ...+ 
T Consensus       229 ~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~--~~~g-  305 (361)
T 3scy_A          229 NEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGY--QLTG-  305 (361)
T ss_dssp             ETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEE--EECS-
T ss_pred             cCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeE--ecCC-
Confidence            6 689999999987754  222   2334456789999999999876665  4889999996  333222111  1112 


Q ss_pred             CCCCCCceEEEEcCCCCEEEEE--eeceEEEEeC--CCcccceeeccCCCccCEEEEEEc
Q 001163          974 TASALADTRVQFHLDQTHLLAV--HETQIAIYEA--PKLECLKQFVPREASGPITHATYS 1029 (1134)
Q Consensus       974 ~~~~~~v~~l~fs~dg~~l~~~--~d~~i~iwd~--~~~~~~~~~~~~~h~~~v~~~~~s 1029 (1134)
                          ..+..++|+|||++|+++  .++.|.+|++  .+++...... ..+...+.|+.|.
T Consensus       306 ----~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~-~~~~~~p~~v~~~  360 (361)
T 3scy_A          306 ----IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKK-DIKVDKPVCLKFV  360 (361)
T ss_dssp             ----SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSC-CEECSSEEEEEEE
T ss_pred             ----CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecce-eeeCCCCeEEEEc
Confidence                347889999999999885  4688999654  4665543321 1235678899886

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.80  E-value=4.1e-17  Score=202.75  Aligned_cols=330  Identities=9%  Similarity=0.012  Sum_probs=213.5

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCC-CCc--ceEEEcCCCcEEEEEECC---------CcEE
Q 001163          600 SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGL-QAS--PCIRFNKEGILLAVSTND---------NGIK  667 (1134)
Q Consensus       600 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v--~~v~~sp~~~~l~~~~~d---------g~i~  667 (1134)
                      ....+.|+|++.+++++  ||.|++||+.+++....+..+... ..+  ..++|||||++|+.++.+         +.+.
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            34578999999888886  899999999999987777655321 112  348999999999998876         4455


Q ss_pred             EEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccccccc
Q 001163          668 ILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEA  747 (1134)
Q Consensus       668 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  747 (1134)
                      +||+.++. .                                                                      
T Consensus        96 ~~d~~~~~-~----------------------------------------------------------------------  104 (740)
T 4a5s_A           96 IYDLNKRQ-L----------------------------------------------------------------------  104 (740)
T ss_dssp             EEETTTTE-E----------------------------------------------------------------------
T ss_pred             EEECCCCc-E----------------------------------------------------------------------
Confidence            67766551 0                                                                      


Q ss_pred             ccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCC
Q 001163          748 VEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQP  827 (1134)
Q Consensus       748 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~  827 (1134)
                                        ..+    ..+...+...+|||||+.|+.+ .++.|.+|++...                   
T Consensus       105 ------------------~~l----~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~-------------------  142 (740)
T 4a5s_A          105 ------------------ITE----ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNL-------------------  142 (740)
T ss_dssp             ------------------CCS----SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTS-------------------
T ss_pred             ------------------EEc----ccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCC-------------------
Confidence                              000    0134568899999999999888 4678999876532                   


Q ss_pred             CCCcccccCCCCC------CCC---------CCeeEEEEcCCCCeEEEee-C-C--------------------------
Q 001163          828 PSGILMTNDISDT------NPE---------DAVPCFALSKNDSYVMSAS-G-G--------------------------  864 (1134)
Q Consensus       828 ~~~~~~~~~~~~~------~h~---------~~v~~v~~s~dg~~la~~s-d-g--------------------------  864 (1134)
                         ........+.      ++.         .....++|||||++||..+ | .                          
T Consensus       143 ---~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp  219 (740)
T 4a5s_A          143 ---PSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYP  219 (740)
T ss_dssp             ---CCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECC
T ss_pred             ---ceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCC
Confidence               2111111110      011         2224589999999999874 2 2                          


Q ss_pred             ---------eEEEEEccC---Ce--EEEEec------CCCCCeEEEEEcCCCCcEEEEEeC----CCcEEEEEcccce--
Q 001163          865 ---------KISLFNMMT---FK--TMTTFM------PPPPAATFLAFHPQDNNIIAIGME----DSSIQIYNVRVDE--  918 (1134)
Q Consensus       865 ---------~i~lwd~~~---~~--~~~~~~------~~~~~v~~l~~sp~~~~~la~g~~----dg~i~iwd~~~~~--  918 (1134)
                               +|++||+.+   ++  ....+.      ++...+..++|+| |+++++....    +..|++||+.+++  
T Consensus       220 ~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~  298 (740)
T 4a5s_A          220 KAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGR  298 (740)
T ss_dssp             BTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTE
T ss_pred             CCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccc
Confidence                     488899988   73  233343      2667799999999 7886665533    3479999999887  


Q ss_pred             --EEE--ec--cCccCceE-----EEEEeeCCCEEE-EEeC-C--CcEEEEECCCCccccceeeeecCCCCCCCCCceEE
Q 001163          919 --VKT--KL--KGHQKRIT-----GLAFSNTLNVLV-SSGA-D--SQLCVWSTDGWEKQASKFLTIPNGRTASALADTRV  983 (1134)
Q Consensus       919 --~~~--~l--~~h~~~V~-----~l~~s~d~~~l~-s~s~-D--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l  983 (1134)
                        +..  .+  .+|...|.     .++|+|||+.++ ..+. +  ..|.+||+.+++     ..++..+..    .+..+
T Consensus       299 ~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~-----~~~lT~g~~----~v~~~  369 (740)
T 4a5s_A          299 WNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD-----CTFITKGTW----EVIGI  369 (740)
T ss_dssp             EEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS-----CEESCCSSS----CEEEE
T ss_pred             cceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc-----eEecccCCE----EEEEE
Confidence              322  22  44655544     789999999887 6654 3  358888988755     233334332    24444


Q ss_pred             EEcCCCCEEEE-Eee-------ceEEEEeCCCcccceeeccC--CCccCEEEEEEccCCCEEEEEecC---CcEEEeecC
Q 001163          984 QFHLDQTHLLA-VHE-------TQIAIYEAPKLECLKQFVPR--EASGPITHATYSCDSQSIYVAFEE---GSVGVLTAS 1050 (1134)
Q Consensus       984 ~fs~dg~~l~~-~~d-------~~i~iwd~~~~~~~~~~~~~--~h~~~v~~~~~s~dg~~l~s~s~D---g~i~vwd~~ 1050 (1134)
                      . ++|++.|+. +..       ..|+..++..++....+.+.  +....+..+.|||||++++.....   ..+.+++..
T Consensus       370 ~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~  448 (740)
T 4a5s_A          370 E-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSV  448 (740)
T ss_dssp             E-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETT
T ss_pred             E-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECC
Confidence            3 355776666 432       24555566554432233321  224578899999999987655433   468888988


Q ss_pred             CCcceeec
Q 001163         1051 TLRLRCRI 1058 (1134)
Q Consensus      1051 ~~~~~~~~ 1058 (1134)
                      +++....+
T Consensus       449 ~~~~~~~l  456 (740)
T 4a5s_A          449 NDKGLRVL  456 (740)
T ss_dssp             TTEEEEEE
T ss_pred             CCcEEEEe
Confidence            77654443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.79  E-value=2.5e-17  Score=185.24  Aligned_cols=253  Identities=13%  Similarity=0.119  Sum_probs=183.2

Q ss_pred             CceeEEEeecCC--CeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccC-----C
Q 001163          346 PKTVVMTLNQGS--AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDY-----T  418 (1134)
Q Consensus       346 ~~~~~~~~~h~~--~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~  418 (1134)
                      ..+.+..+....  .+..++|+|+|+++++++..++.|.+||+.+++.+....                  .++     .
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~------------------~~~~~~~~~   91 (349)
T 1jmx_B           30 SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN------------------LSSVPGEVG   91 (349)
T ss_dssp             TTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE------------------SCCSTTEEE
T ss_pred             CCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE------------------ccccccccc
Confidence            356666666444  789999999999887888889999999999887654311                  111     3


Q ss_pred             CCEEEEEEcCCCCEEEEEeCC------------CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC
Q 001163          419 ASVNRVMWSPDGTLFGVAYSK------------HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED  486 (1134)
Q Consensus       419 ~~V~~l~~spd~~~las~s~d------------g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d  486 (1134)
                      ..+.+++|+|||++|++++.+            +.|.+||+.+++.......+. +...+.+++|+|+|+  +++ ++  
T Consensus        92 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~--l~~-~~--  165 (349)
T 1jmx_B           92 RSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS--LYV-AG--  165 (349)
T ss_dssp             ECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC--EEE-ES--
T ss_pred             ccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc--EEE-cc--
Confidence            347889999999999999865            899999999866444333333 444689999999998  444 33  


Q ss_pred             CeEEEEECCCCceeEEecCCCc------------------------CEEEEeccccCC---------ccEEEEecCCCcE
Q 001163          487 RVIKVWDAVTGTKQYIFEGHES------------------------PVYSICPHHKEN---------IQFIFSTATDGKI  533 (1134)
Q Consensus       487 ~~i~iwd~~~~~~~~~~~~h~~------------------------~v~~~~~~~~~~---------~~~l~s~s~dg~i  533 (1134)
                      +.|.+||+.+++.+..+..+..                        ....+++.++..         ..++.....++.+
T Consensus       166 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  245 (349)
T 1jmx_B          166 PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKT  245 (349)
T ss_dssp             SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCE
T ss_pred             CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcE
Confidence            3499999999998877754320                        122344332110         0122234445666


Q ss_pred             EEEecCCCCceeeecCCCCCeeEEEECc-CCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCE
Q 001163          534 KAWLYDNLGSRVDYDAPGHSSTMMAYSA-DGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNR  612 (1134)
Q Consensus       534 ~vwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  612 (1134)
                      ++|++..         ....+..++++| ++++++++      +..|.+||+.+++.+..+....  .+..++|+|++++
T Consensus       246 ~~~~~~~---------~~~~~~~~~~sp~dg~~l~~~------~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~  308 (349)
T 1jmx_B          246 HTQEFAD---------LTELYFTGLRSPKDPNQIYGV------LNRLAKYDLKQRKLIKAANLDH--TYYCVAFDKKGDK  308 (349)
T ss_dssp             EEEEEEE---------CSSCEEEEEECSSCTTEEEEE------ESEEEEEETTTTEEEEEEECSS--CCCEEEECSSSSC
T ss_pred             Eeccccc---------CCCcceeeEecCCCCCEEEEE------cCeEEEEECccCeEEEEEcCCC--CccceEECCCCCE
Confidence            6665532         344678999999 99999887      2259999999999888776543  4678999999999


Q ss_pred             EEEEeCCCeEEEEEcCCCceeEEEecC
Q 001163          613 FLAAGDEFMIKFWDMDNVNLLASIDAD  639 (1134)
Q Consensus       613 l~~~~~dg~i~iwd~~~~~~~~~~~~~  639 (1134)
                      |++++.++.|++||..+++.+..+...
T Consensus       309 l~~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          309 LYLGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             EEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             EEEecCCCeEEEEeccccceeeeeecC
Confidence            998888999999999999999888765

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.79  E-value=2.5e-16  Score=177.81  Aligned_cols=272  Identities=13%  Similarity=0.126  Sum_probs=183.9

Q ss_pred             EEEEEe----CCCcEEEEecC--CccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCC----C
Q 001163          371 LLVVGT----NMGDVMLWEVG--SRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK----H  440 (1134)
Q Consensus       371 lla~gs----~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~d----g  440 (1134)
                      .+.+|+    .++.|.+|+++  +++.....                  .. +...+..++|+|||++|++++.+    +
T Consensus        15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~------------------~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~   75 (361)
T 3scy_A           15 TMLVGTYTSGNSKGIYTFRFNEETGESLPLS------------------DA-EVANPSYLIPSADGKFVYSVNEFSKDQA   75 (361)
T ss_dssp             EEEEEECCSSSCCEEEEEEEETTTCCEEEEE------------------EE-ECSCCCSEEECTTSSEEEEEECCSSTTC
T ss_pred             EEEEEeccCCCCCCEEEEEEeCCCCCEEEee------------------cc-cCCCCceEEECCCCCEEEEEEccCCCCC
Confidence            445664    45689999774  44432210                  11 66788889999999999999886    7


Q ss_pred             EEEEEEccCC-ceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEe------cC--------
Q 001163          441 IVHLYTYHGG-DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF------EG--------  505 (1134)
Q Consensus       441 ~v~iwd~~~~-~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~------~~--------  505 (1134)
                      .|.+|++... ..+........+......+++  +++. ++++...++.|.+|++.....+..+      .+        
T Consensus        76 ~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~  152 (361)
T 3scy_A           76 AVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQ  152 (361)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTC
T ss_pred             cEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCcccc
Confidence            9999998763 224433345556667788888  7773 3444446889999999754433211      11        


Q ss_pred             CCcCEEEEeccccCCccEE-EEecCCCcEEEEecCCCCc------e-------eeecCCCCCeeEEEECcCCCEEEEEec
Q 001163          506 HESPVYSICPHHKENIQFI-FSTATDGKIKAWLYDNLGS------R-------VDYDAPGHSSTMMAYSADGARLFSCGT  571 (1134)
Q Consensus       506 h~~~v~~~~~~~~~~~~~l-~s~s~dg~i~vwd~~~~~~------~-------~~~~~~~~~v~~~~~s~~~~~l~~~~~  571 (1134)
                      +...+.+++|++  +|+++ ++...++.|.+|+++....      .       ............++|+|||++++++..
T Consensus       153 ~~~~~~~~~~sp--dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~  230 (361)
T 3scy_A          153 TMPHLHCVRITP--DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE  230 (361)
T ss_dssp             SSCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred             CCCcceEEEECC--CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC
Confidence            223457788865  55655 4555689999999886542      1       112233456789999999998887763


Q ss_pred             CCCCCeEEEEEeCCCCee--EEEecCCC--CCceEEEEEcCCCCEEEEEeC--CCeEEEEEcC--CCc--eeEEEecCCC
Q 001163          572 NKEGESYLVEWNESEGAV--KRTYHGLG--KRSVGVVQFDTTKNRFLAAGD--EFMIKFWDMD--NVN--LLASIDADGG  641 (1134)
Q Consensus       572 ~~~~~~~i~~wd~~~~~~--~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~--~~~--~~~~~~~~~~  641 (1134)
                         .+..|.+||+.+++.  +..+....  ......++|+|++++|+++..  ++.|.+|++.  +++  .+..+..   
T Consensus       231 ---~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~---  304 (361)
T 3scy_A          231 ---IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT---  304 (361)
T ss_dssp             ---TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC---
T ss_pred             ---CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC---
Confidence               244699999987754  33332221  124678999999999977775  5899999996  455  3333432   


Q ss_pred             CCCcceEEEcCCCcEEEEEE-CCCcEEEEEcc
Q 001163          642 LQASPCIRFNKEGILLAVST-NDNGIKILANA  672 (1134)
Q Consensus       642 ~~~v~~v~~sp~~~~l~~~~-~dg~i~iw~~~  672 (1134)
                      ...+..++|+|+|++|++++ .++.|.+|.+.
T Consensus       305 g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          305 GIHPRNFIITPNGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred             CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence            23578999999999888887 67899997665

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.78  E-value=9.4e-18  Score=191.85  Aligned_cols=254  Identities=10%  Similarity=-0.019  Sum_probs=176.5

Q ss_pred             cccCCCCEEE-----EEEcCCCCEEEEEeC-CC--EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeC
Q 001163          414 SSDYTASVNR-----VMWSPDGTLFGVAYS-KH--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE  485 (1134)
Q Consensus       414 ~~~h~~~V~~-----l~~spd~~~las~s~-dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~  485 (1134)
                      +..|...+..     .+|||||++||.++. ++  .|.+||+.+++...   ...+|...+..++|+|||+  .|+.++.
T Consensus        26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~  100 (388)
T 3pe7_A           26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD  100 (388)
T ss_dssp             CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred             ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence            4556666666     899999999999987 66  48888998887543   2445655566788999999  7888888


Q ss_pred             CCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEe----------------------cCCCcEEEEecCCCCc
Q 001163          486 DRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFST----------------------ATDGKIKAWLYDNLGS  543 (1134)
Q Consensus       486 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----------------------s~dg~i~vwd~~~~~~  543 (1134)
                      ++.|++||+.+++....+..+...+....+..++++.+++..                      ..+..|.+||+.+++.
T Consensus       101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~  180 (388)
T 3pe7_A          101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES  180 (388)
T ss_dssp             TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred             CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence            999999999999887777766666655555446677777642                      2446799999987654


Q ss_pred             eeeecCCCCCeeEEEECc-CCCEEEEEecCCC--CCeEEEEEeCCCCeeEEEecCCCC-CceEEEEEcCCCCEEEEEe-C
Q 001163          544 RVDYDAPGHSSTMMAYSA-DGARLFSCGTNKE--GESYLVEWNESEGAVKRTYHGLGK-RSVGVVQFDTTKNRFLAAG-D  618 (1134)
Q Consensus       544 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~--~~~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~-~  618 (1134)
                      .. +..+...+..+.|+| ||+.|+.+.....  ....|+++|...+.... +..+.. ..+...+|+|||+.|+..+ .
T Consensus       181 ~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg~~l~~~~~~  258 (388)
T 3pe7_A          181 TV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK-VKTHAEGESCTHEFWVPDGSALVYVSYL  258 (388)
T ss_dssp             EE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-SCCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred             EE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE-eeeCCCCcccccceECCCCCEEEEEecC
Confidence            43 333455688999999 9999988765321  13468889987665443 333332 2577789999999776654 2


Q ss_pred             CC----eEEEEEcCCCceeEEEecCCCC---CCcceEEEcCCCcEEEEE---------ECCCcEEEEEccCC
Q 001163          619 EF----MIKFWDMDNVNLLASIDADGGL---QASPCIRFNKEGILLAVS---------TNDNGIKILANADG  674 (1134)
Q Consensus       619 dg----~i~iwd~~~~~~~~~~~~~~~~---~~v~~v~~sp~~~~l~~~---------~~dg~i~iw~~~~~  674 (1134)
                      ++    .|++||+.+++........+..   ......+|+|||+.|+..         ..+..|++|++.++
T Consensus       259 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~  330 (388)
T 3pe7_A          259 KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG  330 (388)
T ss_dssp             TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred             CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence            22    3999999998754433322100   012334799999888754         44668999998876

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.76  E-value=1.9e-16  Score=178.80  Aligned_cols=248  Identities=9%  Similarity=0.061  Sum_probs=171.2

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCEEEEEEcc-CCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEe-----------
Q 001163          417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYH-GGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-----------  484 (1134)
Q Consensus       417 h~~~V~~l~~spd~~~las~s~dg~v~iwd~~-~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s-----------  484 (1134)
                      ....+..++|+|||++|++++.+ .|.+|++. +++... ......+ +.+.+++|+|||+.+++++++           
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  114 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-eeEeecC-CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence            33468889999999999999888 89999997 776432 1122211 235668999999853355553           


Q ss_pred             --CCCeEEEEECC-CCceeEEec----CCCcCEEEEeccccCCccEEEEec-CCCcEEEEecC-CCCcee--eecC--CC
Q 001163          485 --EDRVIKVWDAV-TGTKQYIFE----GHESPVYSICPHHKENIQFIFSTA-TDGKIKAWLYD-NLGSRV--DYDA--PG  551 (1134)
Q Consensus       485 --~d~~i~iwd~~-~~~~~~~~~----~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~vwd~~-~~~~~~--~~~~--~~  551 (1134)
                        .++++.+|++. +|+....+.    .+...+.+++|++  +|+++++++ .++.|++|+++ +++...  .+..  +.
T Consensus       115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp--dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g  192 (365)
T 1jof_A          115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP--TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG  192 (365)
T ss_dssp             SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred             ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC--CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence              68999999997 466554443    2456788898865  457777655 46899999998 444322  2221  25


Q ss_pred             CCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC--CCeeE---EEecCCC----C-C-------ceEEEE-EcCCCCEE
Q 001163          552 HSSTMMAYSADGARLFSCGTNKEGESYLVEWNES--EGAVK---RTYHGLG----K-R-------SVGVVQ-FDTTKNRF  613 (1134)
Q Consensus       552 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~~~---~~~~~~~----~-~-------~v~~~~-~~~~~~~l  613 (1134)
                      ..+..++|+|||++++++...   +..|.+|+..  +++..   ..+....    . .       .+..++ |+|||++|
T Consensus       193 ~~p~~~~~spdg~~l~v~~~~---~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l  269 (365)
T 1jof_A          193 DHPRWVAMHPTGNYLYALMEA---GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM  269 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETT---TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred             CCCCEeEECCCCCEEEEEECC---CCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEE
Confidence            578899999999999887642   3357777654  56543   2222111    1 1       377899 99999998


Q ss_pred             EEEeCC-C-----eEEEEEcC-CCceeEE---EecCCCCCCcceEEEcC---CCcEEEEEECC-CcEEEEEccCC
Q 001163          614 LAAGDE-F-----MIKFWDMD-NVNLLAS---IDADGGLQASPCIRFNK---EGILLAVSTND-NGIKILANADG  674 (1134)
Q Consensus       614 ~~~~~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~v~~sp---~~~~l~~~~~d-g~i~iw~~~~~  674 (1134)
                      ++++.+ .     .|.+|++. +++....   ...+  ...+..++|+|   +|++|++++.+ +.|.+|++...
T Consensus       270 ~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~--~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP--TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS--SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC--CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            877632 2     89999996 5665432   2222  33467899999   89999998864 89999998765

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.76  E-value=5.6e-16  Score=174.92  Aligned_cols=270  Identities=9%  Similarity=0.095  Sum_probs=176.5

Q ss_pred             EEEE--eCCCCeeEE--EecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcC-CCceeEEEecCCCCCCcceEEEcCC
Q 001163          579 LVEW--NESEGAVKR--TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMD-NVNLLASIDADGGLQASPCIRFNKE  653 (1134)
Q Consensus       579 i~~w--d~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~sp~  653 (1134)
                      |.+|  |..+++...  .........+..++|+|++++|++++.+ .|.+|++. +++.......... .....++|+|+
T Consensus        16 i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~spd   93 (365)
T 1jof_A           16 IFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADTN   93 (365)
T ss_dssp             EEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTSC
T ss_pred             EEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEECCC
Confidence            5554  456675432  2211122256789999999999999887 99999997 7776544332111 23567999999


Q ss_pred             CcE--EEEEE-------------CCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCC
Q 001163          654 GIL--LAVST-------------NDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGE  718 (1134)
Q Consensus       654 ~~~--l~~~~-------------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  718 (1134)
                      |++  ++++.             .+|.+.+|++.........+..                                   
T Consensus        94 g~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~-----------------------------------  138 (365)
T 1jof_A           94 TRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQN-----------------------------------  138 (365)
T ss_dssp             CEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEE-----------------------------------
T ss_pred             CCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEee-----------------------------------
Confidence            994  44542             5788888887632122111110                                   


Q ss_pred             CCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeecc-C
Q 001163          719 RTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALAS-N  797 (1134)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~-d  797 (1134)
                                                         +.                 ..+...+.+++|+|||++++++.. +
T Consensus       139 -----------------------------------~~-----------------~~~~~~~~~~~~spdG~~l~~~~~~~  166 (365)
T 1jof_A          139 -----------------------------------YE-----------------YQENTGIHGMVFDPTETYLYSADLTA  166 (365)
T ss_dssp             -----------------------------------EE-----------------CCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred             -----------------------------------EE-----------------eCCCCcceEEEECCCCCEEEEEcCCC
Confidence                                               00                 002356789999999998877654 6


Q ss_pred             CeEEeeecCCCCCCcccccccCCCCcccCCCCCccccc-CCCCCCCCCCeeEEEEcCCCCeEEEee--CCeEEEEEcc--
Q 001163          798 AVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTN-DISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMM--  872 (1134)
Q Consensus       798 g~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~h~~~v~~v~~s~dg~~la~~s--dg~i~lwd~~--  872 (1134)
                      +.|.+|++..                     +++.... .+....+...+..++|+|||+++++++  ++.|.+|++.  
T Consensus       167 ~~v~~~~~~~---------------------~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~  225 (365)
T 1jof_A          167 NKLWTHRKLA---------------------SGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             TEEEEEEECT---------------------TSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             CEEEEEEECC---------------------CCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC
Confidence            7899998751                     1211100 010001345688999999999988776  5889999875  


Q ss_pred             CCeEE---EEec---C----CCC------CeEEEE-EcCCCCcEEEEEeCCC------cEEEEEcc-cceEEE---eccC
Q 001163          873 TFKTM---TTFM---P----PPP------AATFLA-FHPQDNNIIAIGMEDS------SIQIYNVR-VDEVKT---KLKG  925 (1134)
Q Consensus       873 ~~~~~---~~~~---~----~~~------~v~~l~-~sp~~~~~la~g~~dg------~i~iwd~~-~~~~~~---~l~~  925 (1134)
                      +++..   ..+.   .    +..      .+..++ |+| ||++|+++..+.      .|.+|++. +++...   ....
T Consensus       226 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~  304 (365)
T 1jof_A          226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT  304 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred             CCcEEEccceEEcCCCCcCCcccccccccccccEEEECC-CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeec
Confidence            56543   1222   1    121      488999 999 888887765432      89999996 666543   2334


Q ss_pred             ccCceEEEEEee---CCCEEEEEeCC-CcEEEEECCCC
Q 001163          926 HQKRITGLAFSN---TLNVLVSSGAD-SQLCVWSTDGW  959 (1134)
Q Consensus       926 h~~~V~~l~~s~---d~~~l~s~s~D-g~i~iwd~~~~  959 (1134)
                      +...+..++|+|   ||++|++++.+ +.|.+|+++..
T Consensus       305 ~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          305 PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            555677899999   89999998865 89999998874

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.75  E-value=1.2e-15  Score=171.21  Aligned_cols=219  Identities=11%  Similarity=0.044  Sum_probs=154.0

Q ss_pred             CeeEEEEcCCCCeEEEee---CCeEEEEEccCCeEEEE-ecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEccc-ceE
Q 001163          845 AVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMTT-FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV-DEV  919 (1134)
Q Consensus       845 ~v~~v~~s~dg~~la~~s---dg~i~lwd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~-~~~  919 (1134)
                      ....++++|||++|+++.   +++|.+||+.+++.+.+ +..  .....+.+.|+++..+++.+.||.+.+|++.. ++.
T Consensus       109 ~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~--~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~  186 (361)
T 2oiz_A          109 YDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA--AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKV  186 (361)
T ss_dssp             CGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG--TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSE
T ss_pred             CcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC--CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcE
Confidence            345788999999988875   36899999999988887 542  23334667784557888899999999999865 554


Q ss_pred             EE------eccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecC------CCCCCCCCceEEEEcC
Q 001163          920 KT------KLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPN------GRTASALADTRVQFHL  987 (1134)
Q Consensus       920 ~~------~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~~~~v~~l~fs~  987 (1134)
                      ..      .+..+..++ .+.+++++..++..+.++.|.++|+...............      +..+  .....++|+|
T Consensus       187 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p--~g~~~~a~~~  263 (361)
T 2oiz_A          187 ASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVP--GGYNLVGLHR  263 (361)
T ss_dssp             EEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEE--CCSSCEEEET
T ss_pred             eeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccccccc--CCeeEEEEec
Confidence            41      223333332 3455788888888888999999999765422111111110      0000  1223478999


Q ss_pred             CCCEEEEEe------------eceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCC--c
Q 001163          988 DQTHLLAVH------------ETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTL--R 1053 (1134)
Q Consensus       988 dg~~l~~~~------------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~--~ 1053 (1134)
                      |++.++++.            .++|.+||+.+++.+..+..  +.  +.+++|+|||++|++++. ++|.+||+.++  +
T Consensus       264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~--~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~  338 (361)
T 2oiz_A          264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG--RD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPK  338 (361)
T ss_dssp             TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC--TT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCE
T ss_pred             CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec--CC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcce
Confidence            999888753            24899999999999998873  33  899999999999998887 99999999999  8


Q ss_pred             ceeecCCCcccCCCCCCCceeEEEEecCC
Q 001163         1054 LRCRINPTAYLPTNPSLRVYPLVIAGNPT 1082 (1134)
Q Consensus      1054 ~~~~~~~~~~~~~~h~~~v~~~~~~~~p~ 1082 (1134)
                      .+.++...       ..  .+..++++|+
T Consensus       339 ~~~~i~~~-------G~--~P~~~~~~p~  358 (361)
T 2oiz_A          339 LLRTIEGA-------AE--ASLQVQFHPV  358 (361)
T ss_dssp             EEEEETTS-------CS--SEEEEEECCC
T ss_pred             eeEEeccC-------CC--CcEEEEecCC
Confidence            87775311       11  2455677883

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.74  E-value=1.2e-15  Score=171.09  Aligned_cols=303  Identities=9%  Similarity=0.079  Sum_probs=202.4

Q ss_pred             CCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEec------CCCCCeEEEEEeCCCCeeEEEecCCC-----
Q 001163          529 TDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGT------NKEGESYLVEWNESEGAVKRTYHGLG-----  597 (1134)
Q Consensus       529 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------~~~~~~~i~~wd~~~~~~~~~~~~~~-----  597 (1134)
                      .|+.|.+||..+.+....+.....+  .++|+|||++++++..      .++.+..|.+||..+++.+.++....     
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~  106 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG  106 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence            4789999999887766655544333  8999999999998763      11234579999999999888776431     


Q ss_pred             CCceEEEEEcCCCCEEEEEeC--CCeEEEEEcCCCceeEE-EecCCCCCCcceEEEcCCC-cEEEEEECCCcEEEEEccC
Q 001163          598 KRSVGVVQFDTTKNRFLAAGD--EFMIKFWDMDNVNLLAS-IDADGGLQASPCIRFNKEG-ILLAVSTNDNGIKILANAD  673 (1134)
Q Consensus       598 ~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~sp~~-~~l~~~~~dg~i~iw~~~~  673 (1134)
                      ......++++|+|++|+++..  ++.|.+||+.+++.+.. +...+    ...+.+.|++ ..+++.+.||.+.+|+...
T Consensus       107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~  182 (361)
T 2oiz_A          107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFMTICGDGGLLTINLGE  182 (361)
T ss_dssp             CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEEEEETTSSEEEEEECT
T ss_pred             CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEEEECCCCcEEEEEECC
Confidence            124567899999999999873  68999999999988877 54321    1235677765 6788899999999998865


Q ss_pred             CceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccce
Q 001163          674 GIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRI  753 (1134)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i  753 (1134)
                      ..........                                                                   ..+
T Consensus       183 ~g~~~~~~~~-------------------------------------------------------------------~~~  195 (361)
T 2oiz_A          183 DGKVASQSRS-------------------------------------------------------------------KQM  195 (361)
T ss_dssp             TSSEEEEEEC-------------------------------------------------------------------CCC
T ss_pred             CCcEeeeccc-------------------------------------------------------------------cce
Confidence            3222211100                                                                   001


Q ss_pred             eeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCccc
Q 001163          754 WKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILM  833 (1134)
Q Consensus       754 w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  833 (1134)
                      |+...                  .. ..+.+++++..++..+.++.+.++++.......         +..|++......
T Consensus       196 ~~~~~------------------~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~---------~~~~~~~~~~~~  247 (361)
T 2oiz_A          196 FSVKD------------------DP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKV---------DGPWSLLNDEDK  247 (361)
T ss_dssp             SCTTT------------------SC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEE---------EEEEESCCHHHH
T ss_pred             EcCCC------------------Cc-eEEEecccCCEEEEEeCCCeEEEEEecCCCcee---------cccccccCcccc
Confidence            11100                  00 011224555555555666777777764221000         000111110000


Q ss_pred             ccCCCCCCCCCCeeEEEEcCCCCeEEEee------------CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEE
Q 001163          834 TNDISDTNPEDAVPCFALSKNDSYVMSAS------------GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIA  901 (1134)
Q Consensus       834 ~~~~~~~~h~~~v~~v~~s~dg~~la~~s------------dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la  901 (1134)
                      ....    .......++|+||++.+.++.            .++|.+||+.+++.+.++..+.  +.+++|+| ++++|+
T Consensus       248 ~~~~----~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp-dg~~l~  320 (361)
T 2oiz_A          248 AKNW----VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ-QRNLML  320 (361)
T ss_dssp             HTTC----EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET-TTTEEE
T ss_pred             cccc----ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC-CCCEEE
Confidence            0000    011122478999988777653            2479999999999999998776  99999999 888888


Q ss_pred             EEeCCCcEEEEEcccc--eEEEeccCccCceEEEEEeeCCC
Q 001163          902 IGMEDSSIQIYNVRVD--EVKTKLKGHQKRITGLAFSNTLN  940 (1134)
Q Consensus       902 ~g~~dg~i~iwd~~~~--~~~~~l~~h~~~V~~l~~s~d~~  940 (1134)
                      ++.. +.|.+||..++  +.+.++..+......++++|+|.
T Consensus       321 v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          321 TLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             EeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            8886 99999999999  99999877777788999999985

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.73  E-value=4.2e-16  Score=178.64  Aligned_cols=282  Identities=10%  Similarity=-0.019  Sum_probs=185.8

Q ss_pred             eeEEEEcCCCCeEEEEEeCCC--cEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEE
Q 001163          359 VKSMDFHPVQQILLVVGTNMG--DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA  436 (1134)
Q Consensus       359 V~~v~fsp~g~~lla~gs~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~  436 (1134)
                      +.+++|||||++++++...++  .|.+||+.+++....                   ..++......+.|||||++|+.+
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l-------------------~~~~~~~~~~~~~spdg~~l~~~   98 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQL-------------------TEGKGDNTFGGFISTDERAFFYV   98 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEEC-------------------CCSSCBCTTTCEECTTSSEEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEe-------------------ecCCCCccccceECCCCCEEEEE
Confidence            788999999998766665544  688889988764331                   12222223347899999999999


Q ss_pred             eCCCEEEEEEccCCceeeeeeeeecCCCCEEE-------------------EEEecCCCceEEEEE-----eCCCeEEEE
Q 001163          437 YSKHIVHLYTYHGGDELRNHLEIEAHVGSVND-------------------LAFSYPNKQLSVVTC-----GEDRVIKVW  492 (1134)
Q Consensus       437 s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~-------------------v~~s~~~~~~~l~s~-----s~d~~i~iw  492 (1134)
                      +.++.|.+||+.+++...   ....+......                   +.|+|+++.  ++..     ..+..|.+|
T Consensus        99 ~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~--~~~~~~~~~~~~~~l~~~  173 (396)
T 3c5m_A           99 KNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW--EKFAEFYHTNPTCRLIKV  173 (396)
T ss_dssp             ETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH--HHHHHHHHTCCCEEEEEE
T ss_pred             EcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCcc--eeeeeeccCCCcceEEEE
Confidence            999999999999886433   22223332222                   356777773  3332     456789999


Q ss_pred             ECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCC------CcEEEEecCCCCceeeecCC-CCCeeEEEECcCCCE
Q 001163          493 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATD------GKIKAWLYDNLGSRVDYDAP-GHSSTMMAYSADGAR  565 (1134)
Q Consensus       493 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~  565 (1134)
                      |+.+++..... .+...+..+.|++. ++..|+..+.+      ..|.+||+............ ...+..++|+|||++
T Consensus       174 d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~  251 (396)
T 3c5m_A          174 DIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSA  251 (396)
T ss_dssp             ETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSC
T ss_pred             ECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCE
Confidence            99988766544 46677888888652 33555554433      36888887654433332211 225778999999998


Q ss_pred             EEEEecCC-CCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcC-CCCEEEEEe----------------CCCeEEEEEc
Q 001163          566 LFSCGTNK-EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT-TKNRFLAAG----------------DEFMIKFWDM  627 (1134)
Q Consensus       566 l~~~~~~~-~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~----------------~dg~i~iwd~  627 (1134)
                      |+..+.+. .....|++||+.+++........   ... +.|+| +++.+++++                .++.|++||+
T Consensus       252 l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~---~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~  327 (396)
T 3c5m_A          252 MAYVSYFKGQTDRVIYKANPETLENEEVMVMP---PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT  327 (396)
T ss_dssp             EEEEEEETTTCCEEEEEECTTTCCEEEEEECC---SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred             EEEEecCCCCccceEEEEECCCCCeEEeeeCC---CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence            87775432 22245999999988765433221   223 88999 999888754                3478999999


Q ss_pred             CCCceeEEEecCCCCC---------CcceEEEcCCCcEEEEEEC-CCcEEEEEc
Q 001163          628 DNVNLLASIDADGGLQ---------ASPCIRFNKEGILLAVSTN-DNGIKILAN  671 (1134)
Q Consensus       628 ~~~~~~~~~~~~~~~~---------~v~~v~~sp~~~~l~~~~~-dg~i~iw~~  671 (1134)
                      .+++... +..+....         .+..++|+|+|+.|+..+. ++...+|.+
T Consensus       328 ~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~  380 (396)
T 3c5m_A          328 KAKSAQK-LCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA  380 (396)
T ss_dssp             TTTBCCE-EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             ccCceEE-ccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence            8887543 33221100         2467899999998887765 555555554

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.71  E-value=4.1e-16  Score=178.70  Aligned_cols=306  Identities=16%  Similarity=0.067  Sum_probs=189.0

Q ss_pred             eeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcee
Q 001163          554 STMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL  633 (1134)
Q Consensus       554 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  633 (1134)
                      +..++|+|||++|+..... ++...|++||+.+++......+... ....+.|+|++++|+.++.++.|++||+.+++..
T Consensus        38 ~~~~~~SpdG~~l~~~~~~-~g~~~l~~~d~~~~~~~~l~~~~~~-~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~  115 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDF-DGNRNYYLLNLETQQAVQLTEGKGD-NTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ  115 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECT-TSSCEEEEEETTTTEEEECCCSSCB-CTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred             eecCcCCCCCCEEEEEEec-CCCceEEEEECCCCcEEEeecCCCC-ccccceECCCCCEEEEEEcCCcEEEEECCCCCcE
Confidence            6678999999998887643 3455799999998876554333321 2333789999999999998899999999988766


Q ss_pred             EEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccc
Q 001163          634 ASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVG  713 (1134)
Q Consensus       634 ~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  713 (1134)
                      .....+..        |+++|+.|+....++...+|..                                          
T Consensus       116 ~~~~~~~~--------~~~~g~~l~~~~~~~~~~~~~~------------------------------------------  145 (396)
T 3c5m_A          116 VIYTVDEE--------WKGYGTWVANSDCTKLVGIEIL------------------------------------------  145 (396)
T ss_dssp             EEEECCTT--------EEEEEEEEECTTSSEEEEEEEE------------------------------------------
T ss_pred             EEEecccc--------cCCCCCEEEeccCCcccccccc------------------------------------------
Confidence            55543211        5666666665544433332210                                          


Q ss_pred             cCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeee
Q 001163          714 TSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILA  793 (1134)
Q Consensus       714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~  793 (1134)
                                                                                         .+.++|+++.++.
T Consensus       146 -------------------------------------------------------------------~~~~spdg~~~~~  158 (396)
T 3c5m_A          146 -------------------------------------------------------------------KRDWQPLTSWEKF  158 (396)
T ss_dssp             -------------------------------------------------------------------GGGCCCCCSHHHH
T ss_pred             -------------------------------------------------------------------ccccCCCCcceee
Confidence                                                                               0123455554444


Q ss_pred             ec-----cCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcC-CCCeEEEee-C---
Q 001163          794 LA-----SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSK-NDSYVMSAS-G---  863 (1134)
Q Consensus       794 ~~-----~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~-dg~~la~~s-d---  863 (1134)
                      ..     .+..+.+|++.                      +++.....  .  +...+..++|+| |++.|+..+ +   
T Consensus       159 ~~~~~~~~~~~l~~~d~~----------------------~g~~~~~~--~--~~~~~~~~~~sp~dg~~l~~~~~~~~~  212 (396)
T 3c5m_A          159 AEFYHTNPTCRLIKVDIE----------------------TGELEVIH--Q--DTAWLGHPIYRPFDDSTVGFCHEGPHD  212 (396)
T ss_dssp             HHHHHTCCCEEEEEEETT----------------------TCCEEEEE--E--ESSCEEEEEEETTEEEEEEEEECSCSS
T ss_pred             eeeccCCCcceEEEEECC----------------------CCcEEeec--c--CCcccccceECCCCCCEEEEEecCCCC
Confidence            32     34455555443                      22221111  1  455678899999 888777665 2   


Q ss_pred             ---CeEEEEEccCCeEEEEecCCC--CCeEEEEEcCCCCcEEEEEeCC-----CcEEEEEcccceEEEeccCccCceEEE
Q 001163          864 ---GKISLFNMMTFKTMTTFMPPP--PAATFLAFHPQDNNIIAIGMED-----SSIQIYNVRVDEVKTKLKGHQKRITGL  933 (1134)
Q Consensus       864 ---g~i~lwd~~~~~~~~~~~~~~--~~v~~l~~sp~~~~~la~g~~d-----g~i~iwd~~~~~~~~~l~~h~~~V~~l  933 (1134)
                         ..|.+||+.+++.. .+..+.  ..+..++|+| ++++|+.++.+     +.|++||+.+++...... ... .. +
T Consensus       213 ~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~  287 (396)
T 3c5m_A          213 LVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIP-DGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-H  287 (396)
T ss_dssp             SCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECT-TSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-E
T ss_pred             CCCceEEEEECCCCcee-EeeccCCCccccceEECC-CCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-C
Confidence               36889998765533 333232  3578899999 78877766544     459999998886543221 111 23 8


Q ss_pred             EEee-CCCEEEEEe----------------CCCcEEEEECCCCccccceeeeecCCCC-----CCCCCceEEEEcCCCCE
Q 001163          934 AFSN-TLNVLVSSG----------------ADSQLCVWSTDGWEKQASKFLTIPNGRT-----ASALADTRVQFHLDQTH  991 (1134)
Q Consensus       934 ~~s~-d~~~l~s~s----------------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~~~v~~l~fs~dg~~  991 (1134)
                      .|+| ||+++++++                .+..|++||+.+++..   .+.......     .....+..++|+|||+.
T Consensus       288 ~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  364 (396)
T 3c5m_A          288 LMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ---KLCKHSTSWDVLDGDRQITHPHPSFTPNDDG  364 (396)
T ss_dssp             EEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC---EEEECCCCCCCBTTBSSTTCCCCEECTTSSE
T ss_pred             CccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE---EccCCCCccccccccccCCCCCceEccCCCe
Confidence            9999 999988765                3478999999886632   122111100     00012456789999999


Q ss_pred             EEEEe--ece--EEEEeCCCcccce
Q 001163          992 LLAVH--ETQ--IAIYEAPKLECLK 1012 (1134)
Q Consensus       992 l~~~~--d~~--i~iwd~~~~~~~~ 1012 (1134)
                      |+.+.  ++.  |+++++.+++...
T Consensus       365 l~~~s~~~~~~~l~~~~~~~~~~~~  389 (396)
T 3c5m_A          365 VLFTSDFEGVPAIYIADVPESYKHL  389 (396)
T ss_dssp             EEEEECTTSSCEEEEEECCTTCC--
T ss_pred             EEEEecCCCCceEEEEEEccccccc
Confidence            88743  343  5555666555433

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.68  E-value=1.1e-14  Score=163.32  Aligned_cols=273  Identities=11%  Similarity=0.119  Sum_probs=182.8

Q ss_pred             CCeeEEEEcCCCCeEEEEE--------eCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC
Q 001163          357 SAVKSMDFHPVQQILLVVG--------TNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP  428 (1134)
Q Consensus       357 ~~V~~v~fsp~g~~lla~g--------s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  428 (1134)
                      ..+..++|  ||++++.+.        ..++.|.+||+.+++...                    +    ..+.+++|||
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~Sp   68 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISP   68 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECT
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECC
Confidence            45667788  888776543        225679999998876422                    2    4688999999


Q ss_pred             CCCEEEEEeCC---C--EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeC------------------
Q 001163          429 DGTLFGVAYSK---H--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE------------------  485 (1134)
Q Consensus       429 d~~~las~s~d---g--~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~------------------  485 (1134)
                      ||++||.++.+   +  .|.+||+.+++...    +..+.. +..++|+|||+  .|+.++.                  
T Consensus        69 Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~--~l~~~~~~~~~~~~~~~~~~~~~~~  141 (347)
T 2gop_A           69 DGKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSR--KLLIVGFKRREDEDFIFEDDVPAWF  141 (347)
T ss_dssp             TSSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSS--EEEEEEECCCC---------CCCC-
T ss_pred             CCCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCC--EEEEEEccCCCcCCcEEEcccceee
Confidence            99999988754   3  47888888876433    333334 99999999999  4555543                  


Q ss_pred             ---------CCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCC-------cEEEEecCCCCceeeecC
Q 001163          486 ---------DRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDG-------KIKAWLYDNLGSRVDYDA  549 (1134)
Q Consensus       486 ---------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg-------~i~vwd~~~~~~~~~~~~  549 (1134)
                               ...|.+||+.+++.+..+.. . .+..++|+  ++| ++++++.++       ...+|.++ .+....+..
T Consensus       142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s--pdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~  215 (347)
T 2gop_A          142 DDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH--RDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFE  215 (347)
T ss_dssp             --------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE--TTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEE
T ss_pred             cCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC--CCe-EEEEEecccccccccccccEEEeC-CCceEEecc
Confidence                     25799999998887455544 3 67777775  556 777775542       44566555 333333333


Q ss_pred             CCCCeeEEEECcCCCEEEEEecCCC----CCeEEEEEeCCCCeeEEEecCCCCCceEE-EEEcCCCCEEEEEeCCCeEEE
Q 001163          550 PGHSSTMMAYSADGARLFSCGTNKE----GESYLVEWNESEGAVKRTYHGLGKRSVGV-VQFDTTKNRFLAAGDEFMIKF  624 (1134)
Q Consensus       550 ~~~~v~~~~~s~~~~~l~~~~~~~~----~~~~i~~wd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~i  624 (1134)
                      + ..+..  ++|||++|+..+.+..    ....|++||  +++.......+.. .+.. +.|+ ++ .+++++.++.+++
T Consensus       216 ~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~-~~~~~~~~s-dg-~~~~~~~~~~~~l  287 (347)
T 2gop_A          216 K-VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDR-GVGQAKIKD-GK-VYFTLFEEGSVNL  287 (347)
T ss_dssp             E-ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCS-EEEEEEEET-TE-EEEEEEETTEEEE
T ss_pred             C-cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCc-ccCCccEEc-Cc-EEEEEecCCcEEE
Confidence            3 33433  4999999988775431    235688999  5655444444333 6775 8999 88 8888889999999


Q ss_pred             EEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcE-EEEEccCCceeEEEeccCc
Q 001163          625 WDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGI-KILANADGIRLLRTVESRT  685 (1134)
Q Consensus       625 wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i-~iw~~~~~~~~~~~~~~~~  685 (1134)
                      | +.+++....+. +  ...|.+++|+|  .++++++.++.. .+|.+. + . ...+..+.
T Consensus       288 ~-~~~g~~~~~~~-~--~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g-~-~~~lt~~n  340 (347)
T 2gop_A          288 Y-IWDGEIKPIAK-G--RHWIMGFDVDE--IVVYLKETATRLRELFTWD-G-E-EKQLTDYN  340 (347)
T ss_dssp             E-EESSSEEEEEC-S--SSEEEEEEESS--SEEEEEECSSSCCEEEEES-S-S-EEECCCTT
T ss_pred             E-EcCCceEEEec-C--CCeEEeeeeeC--cEEEEEcCCCChHHheEeC-C-c-EEEecccc
Confidence            9 87666544332 2  45788999999  677777777665 778776 4 2 34444443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.68  E-value=2.2e-14  Score=155.81  Aligned_cols=241  Identities=12%  Similarity=0.099  Sum_probs=175.1

Q ss_pred             CCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecC------CCCCeEEEEEc-CCCCcEEEEEeC-CCcEEEE
Q 001163          842 PEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMP------PPPAATFLAFH-PQDNNIIAIGME-DSSIQIY  912 (1134)
Q Consensus       842 h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~------~~~~v~~l~~s-p~~~~~la~g~~-dg~i~iw  912 (1134)
                      +-..+.+++++++|+++++.. ++.|.+||.. ++.+..+..      +...+..++++ + ++.++++... ++.|++|
T Consensus        28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~-~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN-SGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT-TTEEEEEECGGGCEEEEE
T ss_pred             ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcC-CCeEEEEcCCCCCEEEEE
Confidence            456788999999999888876 7899999986 666666642      33568999995 5 7777776643 8899999


Q ss_pred             EcccceEEEecc-CccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCE
Q 001163          913 NVRVDEVKTKLK-GHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTH  991 (1134)
Q Consensus       913 d~~~~~~~~~l~-~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~  991 (1134)
                      + .+++.+..+. .+...+.+++++++|+++++...++.|.+||..... .  ..+... +..   ..+..++++++|++
T Consensus       106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-~--~~~~~~-~~~---~~p~~i~~~~~g~l  177 (286)
T 1q7f_A          106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV-L--HKFGCS-KHL---EFPNGVVVNDKQEI  177 (286)
T ss_dssp             C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-E--EEEECT-TTC---SSEEEEEECSSSEE
T ss_pred             C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCE-E--EEeCCC-Ccc---CCcEEEEECCCCCE
Confidence            9 5677666664 344678999999999988888888999999965421 1  111111 111   35789999999997


Q ss_pred             EEEE-eeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCC-cEEEeecCCCcceeecCCCcccCCCCC
Q 001163          992 LLAV-HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEG-SVGVLTASTLRLRCRINPTAYLPTNPS 1069 (1134)
Q Consensus       992 l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg-~i~vwd~~~~~~~~~~~~~~~~~~~h~ 1069 (1134)
                      +++. .++.|++||.. ++.+..+...++...+..+++++||+++++...++ .|.+||. +++.+..+...       .
T Consensus       178 ~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~-------~  248 (286)
T 1q7f_A          178 FISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK-------V  248 (286)
T ss_dssp             EEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES-------S
T ss_pred             EEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc-------C
Confidence            7664 57899999974 55555665334446789999999999988888786 9999995 56655554421       1


Q ss_pred             CCceeEEEEecCCCCCEEEEEecCCcEEEEeCCC
Q 001163         1070 LRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1103 (1134)
Q Consensus      1070 ~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~ 1103 (1134)
                      ....+..++++| +++++++ +.|++|++|++..
T Consensus       249 ~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          249 KHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             CCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSC
T ss_pred             CCCcceeEEECC-CCcEEEE-CCCCeEEEEEccc
Confidence            112344567888 6776666 6799999999854

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.68  E-value=6.1e-15  Score=163.52  Aligned_cols=252  Identities=13%  Similarity=0.071  Sum_probs=184.3

Q ss_pred             CCCeeEEEEcCCCCeEEEee-C------------------------CeEEEEEccCCeEEEEec-CCCCCeEEEEEcCCC
Q 001163          843 EDAVPCFALSKNDSYVMSAS-G------------------------GKISLFNMMTFKTMTTFM-PPPPAATFLAFHPQD  896 (1134)
Q Consensus       843 ~~~v~~v~~s~dg~~la~~s-d------------------------g~i~lwd~~~~~~~~~~~-~~~~~v~~l~~sp~~  896 (1134)
                      -+.+.+++++++|+++++.. +                        ++|.+||..+++.+..+. ++......++++| +
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~  101 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D  101 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence            46789999999999998887 4                        379999999999887765 3446789999999 8


Q ss_pred             CcEEEEEeCCCcEEEEEcccce-EEEec---------cCccCceEEEEEee-CCCEEEEEe-CCCcEEEEECCCCccccc
Q 001163          897 NNIIAIGMEDSSIQIYNVRVDE-VKTKL---------KGHQKRITGLAFSN-TLNVLVSSG-ADSQLCVWSTDGWEKQAS  964 (1134)
Q Consensus       897 ~~~la~g~~dg~i~iwd~~~~~-~~~~l---------~~h~~~V~~l~~s~-d~~~l~s~s-~Dg~i~iwd~~~~~~~~~  964 (1134)
                      ++++++...++.|++|+..... .+..+         .++-.....++|+| ++.++++.+ .++.|++|+.+. +... 
T Consensus       102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~~~-  179 (329)
T 3fvz_A          102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KFVT-  179 (329)
T ss_dssp             SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CEEE-
T ss_pred             CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CEEE-
Confidence            8899888889999999976442 44444         34555789999999 888888886 699999999543 3211 


Q ss_pred             eeeeec-CCC---CCCCCCceEEEEcCC-CCEEEEE-eeceEEEEeCCCcccceeeccCCCccCEEEEEEcc------CC
Q 001163          965 KFLTIP-NGR---TASALADTRVQFHLD-QTHLLAV-HETQIAIYEAPKLECLKQFVPREASGPITHATYSC------DS 1032 (1134)
Q Consensus       965 ~~~~~~-~~~---~~~~~~v~~l~fs~d-g~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~------dg 1032 (1134)
                       .+... .+.   .........++++|+ |.++++. .+++|++||..+++.+..+....+...+.+++|+|      +|
T Consensus       180 -~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g  258 (329)
T 3fvz_A          180 -QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNG  258 (329)
T ss_dssp             -EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEEC
T ss_pred             -EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCC
Confidence             11111 000   001134789999999 5555553 67899999999999988887656778899999999      33


Q ss_pred             CEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCCCC
Q 001163         1033 QSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAE 1105 (1134)
Q Consensus      1033 ~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~ 1105 (1134)
                      +..++...+..|++|++.+++.+..+....    ++.....  .++++| ++.++++...+++|++|++....
T Consensus       259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~----~~~~~p~--~ia~~~-dG~lyvad~~~~~I~~~~~~~~~  324 (329)
T 3fvz_A          259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPVR----KHFDMPH--DIVASE-DGTVYIGDAHTNTVWKFTLTEKM  324 (329)
T ss_dssp             CCCTTCSCCCCEEEEETTTCCEEEEECCSS----SCCSSEE--EEEECT-TSEEEEEESSSCCEEEEEEEECS
T ss_pred             CEEeccCCCcEEEEEEcCCCeEEEEEcCCC----CccCCee--EEEECC-CCCEEEEECCCCEEEEEeCCccc
Confidence            333333345589999999999887765221    2333344  457888 67899999999999999987544

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.67  E-value=2.1e-13  Score=160.27  Aligned_cols=332  Identities=13%  Similarity=0.062  Sum_probs=223.9

Q ss_pred             cCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC--CCeeEEEecC
Q 001163          518 KENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES--EGAVKRTYHG  595 (1134)
Q Consensus       518 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~~~~~~~~  595 (1134)
                      ++.+.++++...++.|.++|..+.+....+.. +..+..+.|+|||+++++++.    ++.|.+||+.  +++.+.++..
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~----dg~V~viD~~~~t~~~v~~i~~  238 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGR----DGKVNMIDLWMKEPTTVAEIKI  238 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEET----TSEEEEEETTSSSCCEEEEEEC
T ss_pred             CCCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcC----CCeEEEEECCCCCCcEeEEEec
Confidence            33446778888899999999998877666653 335668999999999998864    3469999996  8888877765


Q ss_pred             CCCCceEEEEEc----CCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCC---------CCCcceEEEcCCCcE-EEEE
Q 001163          596 LGKRSVGVVQFD----TTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGG---------LQASPCIRFNKEGIL-LAVS  660 (1134)
Q Consensus       596 ~~~~~v~~~~~~----~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~---------~~~v~~v~~sp~~~~-l~~~  660 (1134)
                      ..  ....++|+    |||+++++++ .++.|.++|..+.+.+..+...+.         ...+..+..++++.. ++..
T Consensus       239 G~--~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~  316 (567)
T 1qks_A          239 GS--EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV  316 (567)
T ss_dssp             CS--EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred             CC--CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe
Confidence            33  46789999    6999999887 569999999999999888764211         113445555555433 2333


Q ss_pred             ECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccc
Q 001163          661 TNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVK  740 (1134)
Q Consensus       661 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  740 (1134)
                      ..+|.|.++|..+..                                                                 
T Consensus       317 ~~~g~v~~vd~~~~~-----------------------------------------------------------------  331 (567)
T 1qks_A          317 KETGKILLVDYTDLN-----------------------------------------------------------------  331 (567)
T ss_dssp             TTTTEEEEEETTCSS-----------------------------------------------------------------
T ss_pred             cCCCeEEEEecCCCc-----------------------------------------------------------------
Confidence            334555555443220                                                                 


Q ss_pred             cccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCC
Q 001163          741 PKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQ  820 (1134)
Q Consensus       741 ~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~  820 (1134)
                                                                                .+.+..+.              
T Consensus       332 ----------------------------------------------------------~~~v~~i~--------------  339 (567)
T 1qks_A          332 ----------------------------------------------------------NLKTTEIS--------------  339 (567)
T ss_dssp             ----------------------------------------------------------EEEEEEEE--------------
T ss_pred             ----------------------------------------------------------cceeeeee--------------
Confidence                                                                      00000000              


Q ss_pred             CCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee--CCeEEEEEccCCeEEEEecC-----CCCCeEEEEEc
Q 001163          821 APQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMP-----PPPAATFLAFH  893 (1134)
Q Consensus       821 ~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s--dg~i~lwd~~~~~~~~~~~~-----~~~~v~~l~~s  893 (1134)
                                           .......+.|+|||++++++.  +++|.++|+.+++.+..+..     |.+.-..+ ++
T Consensus       340 ---------------------~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~  397 (567)
T 1qks_A          340 ---------------------AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VH  397 (567)
T ss_dssp             ---------------------CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EE
T ss_pred             ---------------------ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-EC
Confidence                                 122345778999999887776  68899999999988777653     32222222 57


Q ss_pred             CCCCcEEEEEe-CCCcEEEEEccc-------ceEEEeccCccCceEEEEEeeCCCEEEEEeC-------CCcEEEEECCC
Q 001163          894 PQDNNIIAIGM-EDSSIQIYNVRV-------DEVKTKLKGHQKRITGLAFSNTLNVLVSSGA-------DSQLCVWSTDG  958 (1134)
Q Consensus       894 p~~~~~la~g~-~dg~i~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-------Dg~i~iwd~~~  958 (1134)
                      |+++.+++++. .++.|.++|..+       .+.++++......-..+.++|++++|.....       ...|.++|+.+
T Consensus       398 p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~  477 (567)
T 1qks_A          398 PTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKA  477 (567)
T ss_dssp             TTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGG
T ss_pred             CCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCc
Confidence            83355555553 468999999987       5677877765443345778999999988663       35899999987


Q ss_pred             Ccc---c-cceeeeecC--CCCCCCCCceEEEEcCCCCEEEEE-e-----eceEEEEeCCCcccceeec
Q 001163          959 WEK---Q-ASKFLTIPN--GRTASALADTRVQFHLDQTHLLAV-H-----ETQIAIYEAPKLECLKQFV 1015 (1134)
Q Consensus       959 ~~~---~-~~~~~~~~~--~~~~~~~~v~~l~fs~dg~~l~~~-~-----d~~i~iwd~~~~~~~~~~~ 1015 (1134)
                      .+.   . ....+.+.+  +.......+..+.|++||+++.++ .     ++.|.|+|.++++.+..+.
T Consensus       478 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  546 (567)
T 1qks_A          478 MTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK  546 (567)
T ss_dssp             CCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             ccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence            621   1 112332210  000011357899999999998885 2     6899999999999887775

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.66  E-value=7e-13  Score=155.86  Aligned_cols=275  Identities=16%  Similarity=0.118  Sum_probs=195.9

Q ss_pred             CeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEcc
Q 001163          369 QILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYH  448 (1134)
Q Consensus       369 ~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~  448 (1134)
                      ..++++...++.|.++|..+++.+...                    .....+..++|||||+++++++.|+.|.+||+.
T Consensus       167 ~~~~V~~~~~~~V~viD~~t~~v~~~i--------------------~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~  226 (567)
T 1qks_A          167 NLFSVTLRDAGQIALIDGSTYEIKTVL--------------------DTGYAVHISRLSASGRYLFVIGRDGKVNMIDLW  226 (567)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEE--------------------ECSSCEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred             ceEEEEeCCCCeEEEEECCCCeEEEEE--------------------eCCCCccceEECCCCCEEEEEcCCCeEEEEECC
Confidence            346778888999999999999877531                    123367799999999999999999999999996


Q ss_pred             --CCceeeeeeeeecCCCCEEEEEEe----cCCCceEEEEEeCCCeEEEEECCCCceeEEecCC-----------CcCEE
Q 001163          449 --GGDELRNHLEIEAHVGSVNDLAFS----YPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH-----------ESPVY  511 (1134)
Q Consensus       449 --~~~~~~~~~~l~~h~~~V~~v~~s----~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h-----------~~~v~  511 (1134)
                        +++.+.   .+.... ....++|+    |||+. ++++...+++|.++|..+.+.+.++...           ...+.
T Consensus       227 ~~t~~~v~---~i~~G~-~P~~ia~s~~~~pDGk~-l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva  301 (567)
T 1qks_A          227 MKEPTTVA---EIKIGS-EARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA  301 (567)
T ss_dssp             SSSCCEEE---EEECCS-EEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEE
T ss_pred             CCCCcEeE---EEecCC-CCceeEEccccCCCCCE-EEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceE
Confidence              666554   343322 36789999    69995 4455556799999999999998876522           12567


Q ss_pred             EEeccccCCccEEEEecCCCcEEEEecCCCCceeeec-CCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeE
Q 001163          512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK  590 (1134)
Q Consensus       512 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~  590 (1134)
                      .+..++.. ..++++...+|.|.++|........... ........+.|+|+|++++++...   ...|.++|..+++.+
T Consensus       302 ~i~~s~~~-~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~---sn~V~ViD~~t~kl~  377 (567)
T 1qks_A          302 AILASHYR-PEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA---RNKLVVIDTKEGKLV  377 (567)
T ss_dssp             EEEECSSS-SEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG---GTEEEEEETTTTEEE
T ss_pred             EEEEcCCC-CEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCC---CCeEEEEECCCCcEE
Confidence            77665543 3567777888999999987654222211 123356688999999999887643   346999999999988


Q ss_pred             EEecC-CCCC-ceEEE-EEcCCCCEEEEEe--CCCeEEEEEcCC-------CceeEEEecCCCCCCcceEEEcCCCcEEE
Q 001163          591 RTYHG-LGKR-SVGVV-QFDTTKNRFLAAG--DEFMIKFWDMDN-------VNLLASIDADGGLQASPCIRFNKEGILLA  658 (1134)
Q Consensus       591 ~~~~~-~~~~-~v~~~-~~~~~~~~l~~~~--~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~v~~sp~~~~l~  658 (1134)
                      ..+.. .... +-... .++|++..+++.+  .++.|.++|..+       .+.+..+...+.  .-..+..+|+++++.
T Consensus       378 ~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~--g~~~i~~~p~~~~l~  455 (567)
T 1qks_A          378 AIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG--GSLFIKTHPNSQYLY  455 (567)
T ss_dssp             EEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS--CCCCEECCTTCSEEE
T ss_pred             EEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC--CCEEEEeCCCCCeEE
Confidence            77754 2211 11122 2578755555444  568999999988       567788775432  224588999999998


Q ss_pred             EEEC-------CCcEEEEEccCC
Q 001163          659 VSTN-------DNGIKILANADG  674 (1134)
Q Consensus       659 ~~~~-------dg~i~iw~~~~~  674 (1134)
                      +...       .++|.++|+.+.
T Consensus       456 v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          456 VDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             EECTTCSSHHHHTCEEEEEGGGC
T ss_pred             EecCCCCCcccCceEEEEECCcc
Confidence            8663       358999998764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.66  E-value=1.7e-14  Score=177.60  Aligned_cols=253  Identities=9%  Similarity=-0.023  Sum_probs=176.3

Q ss_pred             cccccCCCCEEEEEEcCCCCEEEEE--eCCCEEEEEEccCCceeeeeeeeecCCCCEE---------EEEEe--cCCCce
Q 001163          412 SLSSDYTASVNRVMWSPDGTLFGVA--YSKHIVHLYTYHGGDELRNHLEIEAHVGSVN---------DLAFS--YPNKQL  478 (1134)
Q Consensus       412 ~~~~~h~~~V~~l~~spd~~~las~--s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~---------~v~~s--~~~~~~  478 (1134)
                      ..+.+|...|..++|++++-++++.  +.++...||....+...+   .+..|...+.         ...|+  |||+.+
T Consensus        17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~   93 (662)
T 3azo_A           17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE---SALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL   93 (662)
T ss_dssp             HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE---ESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE
T ss_pred             HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc---eeCCCCccccccccccCCccceeeeecCCCeE
Confidence            3467899999999999887777777  568899999965444333   4666766666         66676  999831


Q ss_pred             EEEEEe-CCCeEEEEECC--CCceeEEecC-----CCcCEEEEeccccCCccEEEEecCC----------CcEEEEecCC
Q 001163          479 SVVTCG-EDRVIKVWDAV--TGTKQYIFEG-----HESPVYSICPHHKENIQFIFSTATD----------GKIKAWLYDN  540 (1134)
Q Consensus       479 ~l~s~s-~d~~i~iwd~~--~~~~~~~~~~-----h~~~v~~~~~~~~~~~~~l~s~s~d----------g~i~vwd~~~  540 (1134)
                       |+.++ .+..|.+|++.  .+.....+..     |...+.+++|++  ||+.|++++.+          ..|++||+..
T Consensus        94 -la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~sp--Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  170 (662)
T 3azo_A           94 -LVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLP--ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDG  170 (662)
T ss_dssp             -EEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEET--TTTEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred             -EEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECC--CCCEEEEEEecccCCCCCCceeEEEEEECCC
Confidence             44443 35677777765  2034455555     667788888865  55888888876          5899999987


Q ss_pred             C-----Cceeeec-CCCCCeeEEEECcCCCEEEEEecCCC----CCeEEEEEeCC-CC---eeEEEecCCCCCceEEEEE
Q 001163          541 L-----GSRVDYD-APGHSSTMMAYSADGARLFSCGTNKE----GESYLVEWNES-EG---AVKRTYHGLGKRSVGVVQF  606 (1134)
Q Consensus       541 ~-----~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~----~~~~i~~wd~~-~~---~~~~~~~~~~~~~v~~~~~  606 (1134)
                      .     +....+. .+...+..++|||||++|+..+.+..    ....|++||+. ++   +......++. ..+..+.|
T Consensus       171 ~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~-~~~~~~~~  249 (662)
T 3azo_A          171 SAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE-EAIAQAEW  249 (662)
T ss_dssp             TTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT-BCEEEEEE
T ss_pred             CccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC-ceEcceEE
Confidence            2     2333344 44457788999999999998876542    23579999999 57   4443333333 37889999


Q ss_pred             cCCCCEEEEEeCCC--eEEEEEcCCCceeEEEecCCCC------CCcceEEEcCCCcEEEEEECCCcEEEEEcc
Q 001163          607 DTTKNRFLAAGDEF--MIKFWDMDNVNLLASIDADGGL------QASPCIRFNKEGILLAVSTNDNGIKILANA  672 (1134)
Q Consensus       607 ~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~------~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~  672 (1134)
                      +|||+.+++++.++  .|++||..+++.......+...      ..+..++|+|+++++++++. +.++||.+.
T Consensus       250 spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d  322 (662)
T 3azo_A          250 APDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD  322 (662)
T ss_dssp             CTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred             CCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence            99999777777788  6777777677654433322111      01567899999999999988 999999543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.65  E-value=9.4e-10  Score=137.61  Aligned_cols=586  Identities=10%  Similarity=0.045  Sum_probs=338.8

Q ss_pred             CCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001163          356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV  435 (1134)
Q Consensus       356 ~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las  435 (1134)
                      ...|+++.-.++|..  -.|+.+| +..||-..        ++.+.......      ..-....|.++...++|.+.+.
T Consensus        42 ~n~v~~I~qD~~G~l--WigT~~G-L~ryDG~~--------f~~~~~~~~~~------~~l~~n~I~~i~~d~~g~lWig  104 (795)
T 4a2l_A           42 QSTVFSIDQDKRGNM--WFATYDG-VNKYDGYA--------FTVYQHNEDDP------NSIANDISRIVKTDSQGRVWIG  104 (795)
T ss_dssp             SSCEEEEEECTTSCE--EEEETTE-EEEECSSC--------EEEECCCTTCT------TSCSCSCEEEEEECTTSCEEEE
T ss_pred             cceeEEEEEcCCCCE--EEeecCc-CcccCCCc--------eEEEeCCCCCC------CcccccceeEEEECCCCCEEEE
Confidence            357899999999973  3566666 56666432        22222110000      0012457999999999886654


Q ss_pred             EeCCCEEEEEEccCCceeeeeeeeecCC-CCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCC-CcC-EEE
Q 001163          436 AYSKHIVHLYTYHGGDELRNHLEIEAHV-GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH-ESP-VYS  512 (1134)
Q Consensus       436 ~s~dg~v~iwd~~~~~~~~~~~~l~~h~-~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h-~~~-v~~  512 (1134)
                       +.+| +..||..+++. .......... ..|.++...++|.  +.+ ++. +.+..||..+++......++ ... |.+
T Consensus       105 -T~~G-l~~yd~~~~~f-~~~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~~~~~~~~~~~~~i~~  177 (795)
T 4a2l_A          105 -TRDG-LSRYDEEKDIF-QNFFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKFIDDSFSTAMHKTIAS  177 (795)
T ss_dssp             -ESSC-EEEEETTTTEE-EEECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEEECSSSCHHHHTCCEE
T ss_pred             -eCCc-hheeCCCCCeE-EeccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEEEeccCCCCCCcceEE
Confidence             4555 89999887652 2111110100 1288898888886  333 444 56899998776543211111 123 777


Q ss_pred             EeccccCCccEEEEecCCCcEEEEecCCCCceeee-cCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEE
Q 001163          513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY-DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKR  591 (1134)
Q Consensus       513 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~  591 (1134)
                      +...  .++. +..++.++-|..|+.......... ......|.++...+++...+....++     +..||..+++...
T Consensus       178 i~~d--~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~G-----l~~~~~~~~~~~~  249 (795)
T 4a2l_A          178 TLYR--QGDQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAG-----LFLINPKTKEIKN  249 (795)
T ss_dssp             EEEE--ETTE-EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSSC-----EEEEETTTTEEEE
T ss_pred             EEEC--CCCC-EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCCC-----eEEEeCCCCeEEE
Confidence            7653  3334 555666556888887655433221 12245688888888887665542222     8999988776544


Q ss_pred             EecCC------CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecC-----CCCCCcceEEEcCCCcEEEEE
Q 001163          592 TYHGL------GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD-----GGLQASPCIRFNKEGILLAVS  660 (1134)
Q Consensus       592 ~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~~sp~~~~l~~~  660 (1134)
                      .....      ....|.++...++|...+ |+.+ .|.+||..+++........     -....|.++...++|.+- .|
T Consensus       250 ~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-ig  326 (795)
T 4a2l_A          250 YLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMW-LG  326 (795)
T ss_dssp             ECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEE-EE
T ss_pred             eecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEE-EE
Confidence            32221      123688888888876554 4444 5889998877644332211     112468888888888654 57


Q ss_pred             ECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccc
Q 001163          661 TNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVK  740 (1134)
Q Consensus       661 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  740 (1134)
                      +.++.|..|+..+..  +..+.....                                                      
T Consensus       327 t~~~Gl~~~~~~~~~--~~~~~~~~~------------------------------------------------------  350 (795)
T 4a2l_A          327 TYFGGLNYYHPIRNR--FKNIRNIPY------------------------------------------------------  350 (795)
T ss_dssp             ESSSCEEEECGGGGS--SEEECCCTT------------------------------------------------------
T ss_pred             ECCCCeEEeCCCccc--ceEEcCCCC------------------------------------------------------
Confidence            777778888765431  111110000                                                      


Q ss_pred             cccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCC
Q 001163          741 PKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQ  820 (1134)
Q Consensus       741 ~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~  820 (1134)
                                                    ........|.++...++|.. -+|+.++-+..|+...             
T Consensus       351 ------------------------------~~~l~~~~V~~i~~d~~g~l-WiGt~~~Gl~~~~~~~-------------  386 (795)
T 4a2l_A          351 ------------------------------KNSLSDNVVSCIVEDKDKNL-WIGTNDGGLNLYNPIT-------------  386 (795)
T ss_dssp             ------------------------------SSSCSCSSEEEEEECTTSCE-EEEESSSCEEEECTTT-------------
T ss_pred             ------------------------------CCCCCCCeeEEEEECCCCCE-EEEECCCCeEEEcCCC-------------
Confidence                                          00012356888888888874 4456565566665432             


Q ss_pred             CCcccCCCCCcccccCCCC-----CCCCCCeeEEEEcCCCC-eEEEeeCCeEEEEEccCCeEEEEec----CCCCCeEEE
Q 001163          821 APQLWQPPSGILMTNDISD-----TNPEDAVPCFALSKNDS-YVMSASGGKISLFNMMTFKTMTTFM----PPPPAATFL  890 (1134)
Q Consensus       821 ~~~~~d~~~~~~~~~~~~~-----~~h~~~v~~v~~s~dg~-~la~~sdg~i~lwd~~~~~~~~~~~----~~~~~v~~l  890 (1134)
                               +.........     .-....|.+++..++|+ +.+...++.|..||..+++...-..    .....|.++
T Consensus       387 ---------~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i  457 (795)
T 4a2l_A          387 ---------QRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAI  457 (795)
T ss_dssp             ---------CCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEE
T ss_pred             ---------CcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEE
Confidence                     2111110000     00246789999999998 5544446789999998876543322    134578999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEEcccceEEEecc------CccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccc
Q 001163          891 AFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK------GHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQAS  964 (1134)
Q Consensus       891 ~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~------~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~  964 (1134)
                      ...+ ++.+.+. +. +.+.+|+..+++......      .....|.++...++|.+.+... + .|..||..+++.   
T Consensus       458 ~~d~-~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~---  529 (795)
T 4a2l_A          458 LPDG-EGNLWLG-TL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI---  529 (795)
T ss_dssp             EECS-SSCEEEE-ES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE---
T ss_pred             EECC-CCCEEEE-ec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE---
Confidence            9888 6765554 44 458899988776543221      1236789999998898776554 4 488999876542   


Q ss_pred             eeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeeccCC-CccCEEEEEEccCCCEEEEEecCCc
Q 001163          965 KFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPRE-ASGPITHATYSCDSQSIYVAFEEGS 1043 (1134)
Q Consensus       965 ~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~-h~~~v~~~~~s~dg~~l~s~s~Dg~ 1043 (1134)
                      ...............|.++...++|.+.+++. +.+..||..+++...--...+ ....|.++...++|.+.+++ . +-
T Consensus       530 ~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~-~G  606 (795)
T 4a2l_A          530 QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EGFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST-N-RG  606 (795)
T ss_dssp             EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SCEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE-T-TE
T ss_pred             EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CCceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc-C-Cc
Confidence            11100011111124688999999998666554 478899987665432111111 14568999999999877655 3 45


Q ss_pred             EEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCC
Q 001163         1044 VGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1103 (1134)
Q Consensus      1044 i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~ 1103 (1134)
                      |..|+..+++.. .+....-++   ...+..-++...+ ++ .|..|+.+| +..+++..
T Consensus       607 l~~~~~~~~~~~-~~~~~dGl~---~~~f~~~~~~~~~-~G-~l~~g~~~G-l~~~~p~~  659 (795)
T 4a2l_A          607 ISCFNPETEKFR-NFTESDGLQ---SNQFNTASYCRTS-VG-QMYFGGING-ITTFRPEL  659 (795)
T ss_dssp             EEEEETTTTEEE-EECGGGTCS---CSCEEEEEEEECT-TS-CEEEEETTE-EEEECGGG
T ss_pred             eEEEcCCCCcEE-EcCCcCCCc---cccCccCceeECC-CC-eEEEecCCc-eEEEcHHH
Confidence            788898776543 232221121   1222222334444 44 455677777 56666543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.65  E-value=1.5e-10  Score=144.78  Aligned_cols=534  Identities=8%  Similarity=0.032  Sum_probs=318.5

Q ss_pred             CCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001163          356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV  435 (1134)
Q Consensus       356 ~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las  435 (1134)
                      ...|.++...++|...  .|+.+| +..||..+++...-      ...          .......|.++...++|.+.+.
T Consensus        87 ~n~I~~i~~d~~g~lW--igT~~G-l~~yd~~~~~f~~~------~~~----------~~~~~~~i~~i~~d~~g~lwi~  147 (795)
T 4a2l_A           87 NDISRIVKTDSQGRVW--IGTRDG-LSRYDEEKDIFQNF------FYE----------KNGKHLQVNGIEEISPEQLLIS  147 (795)
T ss_dssp             CSCEEEEEECTTSCEE--EEESSC-EEEEETTTTEEEEE------CCE----------ETTEECCCCEEEEEETTEEEEE
T ss_pred             ccceeEEEECCCCCEE--EEeCCc-hheeCCCCCeEEec------ccc----------ccCCCceEEEEEECCCCCEEEE
Confidence            3579999999999843  455544 89999877643221      000          0000012889999888887765


Q ss_pred             EeCCCEEEEEEccCCceeeeeeeeecC-CCC-EEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEe-cCCCcCEEE
Q 001163          436 AYSKHIVHLYTYHGGDELRNHLEIEAH-VGS-VNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF-EGHESPVYS  512 (1134)
Q Consensus       436 ~s~dg~v~iwd~~~~~~~~~~~~l~~h-~~~-V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~  512 (1134)
                      . .+ .|..||..+++... .  ..++ ... |.++...+++.   +..++.++.|..||..+++..... ..+...|.+
T Consensus       148 t-~~-gl~~~~~~~~~~~~-~--~~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~  219 (795)
T 4a2l_A          148 T-PE-GLIMFDIKESKFID-D--SFSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQA  219 (795)
T ss_dssp             E-TT-EEEEEETTTTEEEC-S--SSCHHHHTCCEEEEEEETTE---EEEEESSSCEEEEETTTCCEEECC----CCCEEE
T ss_pred             E-CC-ceEEEECCCCEEEe-c--cCCCCCCcceEEEEECCCCC---EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEE
Confidence            4 34 48899987764221 1  0011 123 88888888876   444666556889998777654321 123456887


Q ss_pred             EeccccCCccEEEEecCCCcEEEEecCCCCceeeec-------CCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC
Q 001163          513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-------APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES  585 (1134)
Q Consensus       513 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~  585 (1134)
                      +...  .++. |..++.++-+..||..+........       .....|.++...++|...+... ++     |.+||..
T Consensus       220 i~~d--~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-~G-----l~~~~~~  290 (795)
T 4a2l_A          220 ILQQ--SPTR-IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-ND-----LNIYHEG  290 (795)
T ss_dssp             EEEE--ETTE-EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-SC-----EEEEETT
T ss_pred             EEEc--CCCC-EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC-Ch-----hheEcCC
Confidence            7653  3434 5555555458888876543322211       1234689999998888666542 22     8999988


Q ss_pred             CCeeEEEecC------CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecC----CCCCCcceEEEcCCCc
Q 001163          586 EGAVKRTYHG------LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD----GGLQASPCIRFNKEGI  655 (1134)
Q Consensus       586 ~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~v~~v~~sp~~~  655 (1134)
                      +++.......      .....|.++...++|. |..|+.++-|..|+..++.........    -....|.++...++|.
T Consensus       291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~  369 (795)
T 4a2l_A          291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN  369 (795)
T ss_dssp             TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC
T ss_pred             CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC
Confidence            7765543321      1223688898888876 556677778899987665433221111    0134578888888876


Q ss_pred             EEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCcc
Q 001163          656 LLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRN  735 (1134)
Q Consensus       656 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  735 (1134)
                      +. .|+.++.|..|+..++.  +..+.....                                                 
T Consensus       370 lW-iGt~~~Gl~~~~~~~~~--~~~~~~~~~-------------------------------------------------  397 (795)
T 4a2l_A          370 LW-IGTNDGGLNLYNPITQR--FTSYTLQED-------------------------------------------------  397 (795)
T ss_dssp             EE-EEESSSCEEEECTTTCC--EEEECCC---------------------------------------------------
T ss_pred             EE-EEECCCCeEEEcCCCCc--EEEEecCCC-------------------------------------------------
Confidence            55 47777788888876541  111110000                                                 


Q ss_pred             CcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccc
Q 001163          736 FTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGK  815 (1134)
Q Consensus       736 ~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~  815 (1134)
                                                  ... .    ......|.++...++|..|.+++.++-+.+|+.....+     
T Consensus       398 ----------------------------~~~-~----~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~-----  439 (795)
T 4a2l_A          398 ----------------------------ESA-R----GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV-----  439 (795)
T ss_dssp             -------------------------------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE-----
T ss_pred             ----------------------------Ccc-c----CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE-----
Confidence                                        000 0    00235688888888888455566655677776442211     


Q ss_pred             cccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecC------CCCCeEE
Q 001163          816 ATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMP------PPPAATF  889 (1134)
Q Consensus       816 ~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~------~~~~v~~  889 (1134)
                             ..+......         .....|.++...++|.+.+... +.|.+||..+++.......      ....|.+
T Consensus       440 -------~~~~~~~~~---------l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  502 (795)
T 4a2l_A          440 -------ENFNQRNSQ---------LVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITT  502 (795)
T ss_dssp             -------EEECTTTSC---------CSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEE
T ss_pred             -------EEeecCCCC---------cCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEE
Confidence                   001000000         1346789999999998776665 5688999887655432211      2356899


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEEcccceEEEecc-------CccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccc
Q 001163          890 LAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK-------GHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQ  962 (1134)
Q Consensus       890 l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~-------~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~  962 (1134)
                      +...+ ++.+.+.. . +-+..|+..+++.  .+.       .....|.++...++|.+.++.. . -|..||..+++. 
T Consensus       503 i~~d~-~g~lWigt-~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~-  574 (795)
T 4a2l_A          503 LFRDS-HKRLWIGG-E-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQI-  574 (795)
T ss_dssp             EEECT-TCCEEEEE-S-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEE-
T ss_pred             EEECC-CCCEEEEe-C-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcE-
Confidence            99988 67666544 4 5588899887765  222       2345789999988998766554 3 488999876442 


Q ss_pred             cceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeecc-CCC-ccCE--EEEEEccCCCEEEEE
Q 001163          963 ASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVP-REA-SGPI--THATYSCDSQSIYVA 1038 (1134)
Q Consensus       963 ~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~-~~h-~~~v--~~~~~s~dg~~l~s~ 1038 (1134)
                        .......+-.  ...+.++...++|++.+++ ++.|..|+..+++.. .+.. .+- ...+  .++...+||.+++ |
T Consensus       575 --~~~~~~~gl~--~~~i~~i~~d~~g~lWi~t-~~Gl~~~~~~~~~~~-~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g  647 (795)
T 4a2l_A          575 --KRYNTTNGLP--NNVVYGILEDSFGRLWLST-NRGISCFNPETEKFR-NFTESDGLQSNQFNTASYCRTSVGQMYF-G  647 (795)
T ss_dssp             --EEECGGGTCS--CSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEE-EECGGGTCSCSCEEEEEEEECTTSCEEE-E
T ss_pred             --EEeCCCCCCc--hhheEEEEECCCCCEEEEc-CCceEEEcCCCCcEE-EcCCcCCCccccCccCceeECCCCeEEE-e
Confidence              1222222222  1458889999999866655 566888888766532 2221 111 2232  5677788888666 5


Q ss_pred             ecCCcEEEeec
Q 001163         1039 FEEGSVGVLTA 1049 (1134)
Q Consensus      1039 s~Dg~i~vwd~ 1049 (1134)
                      +.+| +..++-
T Consensus       648 ~~~G-l~~~~p  657 (795)
T 4a2l_A          648 GING-ITTFRP  657 (795)
T ss_dssp             ETTE-EEEECG
T ss_pred             cCCc-eEEEcH
Confidence            5567 444553

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.64  E-value=2.1e-14  Score=176.74  Aligned_cols=286  Identities=10%  Similarity=-0.007  Sum_probs=187.6

Q ss_pred             ecCCCeeEEEEcCCCCeEEEEE--eCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEE---------
Q 001163          354 NQGSAVKSMDFHPVQQILLVVG--TNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVN---------  422 (1134)
Q Consensus       354 ~h~~~V~~v~fsp~g~~lla~g--s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~---------  422 (1134)
                      .|...|..++||+++- +++.+  +.++...||....+.....                   +..|...|.         
T Consensus        21 ~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------l~~~~~~~~~~~~~~~~~   80 (662)
T 3azo_A           21 SRSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEES-------------------ALPAPWNVRNRVFEYSGF   80 (662)
T ss_dssp             HTCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEEE-------------------SSCTTCCBCCCGGGTCCC
T ss_pred             hcCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcce-------------------eCCCCccccccccccCCc
Confidence            3778899999998764 34555  5578899999644432221                   344544544         


Q ss_pred             EEEEc--CCCCE-EEEEeC-CCEEEEEEcc--C-Cceeeeeeeeec-----CCCCEEEEEEecCCCceEEEEEeCC----
Q 001163          423 RVMWS--PDGTL-FGVAYS-KHIVHLYTYH--G-GDELRNHLEIEA-----HVGSVNDLAFSYPNKQLSVVTCGED----  486 (1134)
Q Consensus       423 ~l~~s--pd~~~-las~s~-dg~v~iwd~~--~-~~~~~~~~~l~~-----h~~~V~~v~~s~~~~~~~l~s~s~d----  486 (1134)
                      ..+|+  |||++ |+.++. +..|.+|++.  + ++ ..   .+..     |...+.+++|+|||+  .|++++.|    
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~~~  154 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFTGE  154 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEECSS
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEecccCC
Confidence            55565  99998 777654 5566666665  3 43 33   2444     677899999999999  67777766    


Q ss_pred             ------CeEEEEECCC------CceeEEec-CCCcCEEEEeccccCCccEEEEecCC--------CcEEEEecC-CC---
Q 001163          487 ------RVIKVWDAVT------GTKQYIFE-GHESPVYSICPHHKENIQFIFSTATD--------GKIKAWLYD-NL---  541 (1134)
Q Consensus       487 ------~~i~iwd~~~------~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d--------g~i~vwd~~-~~---  541 (1134)
                            ..|++||+.+      ++. ..+. .+...+..++|+  +||++|+.++.+        ..|++||+. ++   
T Consensus       155 ~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~S--pDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~  231 (662)
T 3azo_A          155 GPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLS--PDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFA  231 (662)
T ss_dssp             STTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEEC--TTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEE
T ss_pred             CCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceEC--CCCCEEEEEECCCCCCCCCCcEEEEEEECCCCccc
Confidence                  5899999988      554 4455 555667667774  566888877754        379999998 34   


Q ss_pred             CceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCC-------ceEEEEEcCCCCEEE
Q 001163          542 GSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKR-------SVGVVQFDTTKNRFL  614 (1134)
Q Consensus       542 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~  614 (1134)
                      ........+...+..++|+|||+.++++..  ++...|++||..+++.......+...       .+..++|++++..++
T Consensus       232 ~~~~l~~~~~~~~~~~~~spdg~l~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~  309 (662)
T 3azo_A          232 DTRTLLGGPEEAIAQAEWAPDGSLIVATDR--TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAV  309 (662)
T ss_dssp             EEEEEEEETTBCEEEEEECTTSCEEEEECT--TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEE
T ss_pred             ccEEeCCCCCceEcceEECCCCeEEEEECC--CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEE
Confidence            222233333567889999999995555543  34457899998777765544433221       145688999999999


Q ss_pred             EEeCCCeEEEE--EcCCCceeEEEecCCCCCCcceE-EEcCCCcEEEEEECCCcEEEE--EccCC
Q 001163          615 AAGDEFMIKFW--DMDNVNLLASIDADGGLQASPCI-RFNKEGILLAVSTNDNGIKIL--ANADG  674 (1134)
Q Consensus       615 ~~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~v-~~sp~~~~l~~~~~dg~i~iw--~~~~~  674 (1134)
                      +++. +.+++|  |..+++ +..+..+  ...+..+ +++.+.-.+++++.+....+|  ++.++
T Consensus       310 ~~~~-~~~~l~~~d~~~~~-~~~l~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g  370 (662)
T 3azo_A          310 VHGK-GAAVLGILDPESGE-LVDAAGP--WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG  370 (662)
T ss_dssp             EEBS-SSCEEEEEETTTTE-EEECCSS--CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred             EEEc-CccEEEEEECCCCc-EEEecCC--CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence            9988 999999  555555 5555543  3455555 444443344455555544444  55555

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.63  E-value=9.9e-14  Score=153.76  Aligned_cols=245  Identities=12%  Similarity=0.106  Sum_probs=180.6

Q ss_pred             CCeeEEEEcCCCCeEEEEEeCC------------------------CcEEEEecCCccceeeeceeeeeccccCcccccc
Q 001163          357 SAVKSMDFHPVQQILLVVGTNM------------------------GDVMLWEVGSRERIAVKSFKVWELGACSMPLQAS  412 (1134)
Q Consensus       357 ~~V~~v~fsp~g~~lla~gs~d------------------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (1134)
                      ..|.+|+++|+|+ ++++.+.+                        +.|.+||..+++.+..                  
T Consensus        24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------------   84 (329)
T 3fvz_A           24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS------------------   84 (329)
T ss_dssp             SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE------------------
T ss_pred             CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec------------------
Confidence            5688999999998 55676666                        4799999988876532                  


Q ss_pred             ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCc-eeeeeeee---------ecCCCCEEEEEEec-CCCceEEE
Q 001163          413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGD-ELRNHLEI---------EAHVGSVNDLAFSY-PNKQLSVV  481 (1134)
Q Consensus       413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~-~~~~~~~l---------~~h~~~V~~v~~s~-~~~~~~l~  481 (1134)
                      .-.++-..+..++++|+|+++++...++.|++||..... .+.   .+         .++-.....++|+| ++.  +++
T Consensus        85 ~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv  159 (329)
T 3fvz_A           85 SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFV  159 (329)
T ss_dssp             ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EEE
T ss_pred             cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EEE
Confidence            012455689999999999999999999999999986542 222   23         34555789999999 676  677


Q ss_pred             EEe-CCCeEEEEECCCCceeEEecC----------CCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec--
Q 001163          482 TCG-EDRVIKVWDAVTGTKQYIFEG----------HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD--  548 (1134)
Q Consensus       482 s~s-~d~~i~iwd~~~~~~~~~~~~----------h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~--  548 (1134)
                      +.+ .++.|++|| .+|+.+..+..          +-.....++++++. +.++++...++.|++|+.++++....+.  
T Consensus       160 ~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~-g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~  237 (329)
T 3fvz_A          160 SDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHL-DQLCVADRENGRIQCFKTDTKEFVREIKHA  237 (329)
T ss_dssp             EECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTT-TEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred             EeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCC-CEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence            776 689999999 67888877742          22347889886532 4788888899999999998666665553  


Q ss_pred             CCCCCeeEEEECcCCCEEEEEecC---CCCCeEEEEEeCCCCeeEEEec---CCCCCceEEEEEcCCCCEEEEEeCCCeE
Q 001163          549 APGHSSTMMAYSADGARLFSCGTN---KEGESYLVEWNESEGAVKRTYH---GLGKRSVGVVQFDTTKNRFLAAGDEFMI  622 (1134)
Q Consensus       549 ~~~~~v~~~~~s~~~~~l~~~~~~---~~~~~~i~~wd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i  622 (1134)
                      .....+..++++| +..+...+..   ......|++||..+++.+..+.   .+.. .+..++++|+|..+++...++.|
T Consensus       238 ~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~-~p~~ia~~~dG~lyvad~~~~~I  315 (329)
T 3fvz_A          238 SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD-MPHDIVASEDGTVYIGDAHTNTV  315 (329)
T ss_dssp             TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS-SEEEEEECTTSEEEEEESSSCCE
T ss_pred             ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC-CeeEEEECCCCCEEEEECCCCEE
Confidence            3345788899999 4333333210   1223469999999999998874   3333 68899999999777777789999


Q ss_pred             EEEEcCC
Q 001163          623 KFWDMDN  629 (1134)
Q Consensus       623 ~iwd~~~  629 (1134)
                      ++|++..
T Consensus       316 ~~~~~~~  322 (329)
T 3fvz_A          316 WKFTLTE  322 (329)
T ss_dssp             EEEEEEE
T ss_pred             EEEeCCc
Confidence            9999753

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.63  E-value=3.6e-13  Score=146.18  Aligned_cols=245  Identities=10%  Similarity=0.083  Sum_probs=178.4

Q ss_pred             ccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeee---ecCCCCEEEEEEe-cCCCceEEEEEeC-CCeE
Q 001163          415 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEI---EAHVGSVNDLAFS-YPNKQLSVVTCGE-DRVI  489 (1134)
Q Consensus       415 ~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l---~~h~~~V~~v~~s-~~~~~~~l~s~s~-d~~i  489 (1134)
                      .++-..+.+++++++|+++++...++.|.+||.. ++.+......   .+|...+..++++ +++.  ++++... ++.|
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~--l~v~~~~~~~~i  102 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD--IIVTERSPTHQI  102 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE--EEEEECGGGCEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe--EEEEcCCCCCEE
Confidence            3566789999999999999998899999999987 4434322110   1345678999995 5665  4555533 8899


Q ss_pred             EEEECCCCceeEEecC-CCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec--CCCCCeeEEEECcCCCEE
Q 001163          490 KVWDAVTGTKQYIFEG-HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD--APGHSSTMMAYSADGARL  566 (1134)
Q Consensus       490 ~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l  566 (1134)
                      .+|| .+++.+..+.. +...+.++++.+  +|.++++...++.|.+||.. ......+.  .....+..++++++|+.+
T Consensus       103 ~~~d-~~g~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~  178 (286)
T 1q7f_A          103 QIYN-QYGQFVRKFGATILQHPRGVTVDN--KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIF  178 (286)
T ss_dssp             EEEC-TTSCEEEEECTTTCSCEEEEEECT--TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEE
T ss_pred             EEEC-CCCcEEEEecCccCCCceEEEEeC--CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEE
Confidence            9999 67887777643 445688888854  55788888888999999964 33333332  233468899999999876


Q ss_pred             EEEecCCCCCeEEEEEeCCCCeeEEEecCCC-CCceEEEEEcCCCCEEEEEeCCC-eEEEEEcCCCceeEEEecCCCCCC
Q 001163          567 FSCGTNKEGESYLVEWNESEGAVKRTYHGLG-KRSVGVVQFDTTKNRFLAAGDEF-MIKFWDMDNVNLLASIDADGGLQA  644 (1134)
Q Consensus       567 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~  644 (1134)
                      ++...    +..|.+||. +++.+..+.... ...+..++++++++.+++...++ .|.+||. +++.+..+..+.....
T Consensus       179 v~~~~----~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~  252 (286)
T 1q7f_A          179 ISDNR----AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQ  252 (286)
T ss_dssp             EEEGG----GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSC
T ss_pred             EEECC----CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCc
Confidence            66543    346999997 456666665432 13678899999998888887776 9999995 5677777765543345


Q ss_pred             cceEEEcCCCcEEEEEECCCcEEEEEccC
Q 001163          645 SPCIRFNKEGILLAVSTNDNGIKILANAD  673 (1134)
Q Consensus       645 v~~v~~sp~~~~l~~~~~dg~i~iw~~~~  673 (1134)
                      +..++++|+|+++++ +.++.|++|+...
T Consensus       253 ~~~i~~~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          253 CFDVALMDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             EEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             ceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence            678999999987776 6799999998754

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.61  E-value=2.9e-13  Score=167.23  Aligned_cols=250  Identities=10%  Similarity=0.009  Sum_probs=176.1

Q ss_pred             ccCCCCEEEEEEcCCCCEEEEEeCCC-----EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCe-
Q 001163          415 SDYTASVNRVMWSPDGTLFGVAYSKH-----IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV-  488 (1134)
Q Consensus       415 ~~h~~~V~~l~~spd~~~las~s~dg-----~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~-  488 (1134)
                      .+|...+..++|||||++||.++.++     .|++||+.+++....  .+..  ..+..++|+|||+  .|+.++.++. 
T Consensus       121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~~~--~~~~~~~wspDg~--~l~~~~~~~~~  194 (710)
T 2xdw_A          121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLER--VKFSCMAWTHDGK--GMFYNAYPQQD  194 (710)
T ss_dssp             TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEEE--ECSCCEEECTTSS--EEEEEECCCCS
T ss_pred             cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--cccC--cccceEEEEeCCC--EEEEEEECCcc
Confidence            35666799999999999999876543     899999999986542  1222  2367899999999  6777776655 


Q ss_pred             ---------------EEEEECCCCc----eeEEecCCCcCEEEEeccccCCccEEEEecC-----CCcEEEEecCC----
Q 001163          489 ---------------IKVWDAVTGT----KQYIFEGHESPVYSICPHHKENIQFIFSTAT-----DGKIKAWLYDN----  540 (1134)
Q Consensus       489 ---------------i~iwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-----dg~i~vwd~~~----  540 (1134)
                                     |++|++.++.    .+.....|...+..+.|+  +||++|+..+.     +..|.+||+..    
T Consensus       195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~S--pDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~  272 (710)
T 2xdw_A          195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELS--DDGRYVLLSIREGCDPVNRLWYCDLQQESNG  272 (710)
T ss_dssp             SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC--TTSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred             ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEc--CCCCEEEEEEEccCCCccEEEEEECcccccc
Confidence                           9999998876    233333355667778775  45577776654     56899999976    


Q ss_pred             --CC-ceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCee--EEEecCCCC-CceEEEEEcCCCCEEE
Q 001163          541 --LG-SRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV--KRTYHGLGK-RSVGVVQFDTTKNRFL  614 (1134)
Q Consensus       541 --~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~-~~v~~~~~~~~~~~l~  614 (1134)
                        +. ....+..+...+.. .|+++|+.|+..+........|.+||+.++..  ...+..+.. ..+..++|++++..++
T Consensus       273 ~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~  351 (710)
T 2xdw_A          273 ITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL  351 (710)
T ss_dssp             SCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred             cCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence              32 33444444444443 58899999888775444466799999988742  233434433 3677888987777777


Q ss_pred             EEeCCCe--EEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEE-E---CCCcEEEEEccCCc
Q 001163          615 AAGDEFM--IKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS-T---NDNGIKILANADGI  675 (1134)
Q Consensus       615 ~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~---~dg~i~iw~~~~~~  675 (1134)
                      +...++.  |++|++.+++.+..+..+  ...+..++++|++..++.. +   ..+.++.||+.++.
T Consensus       352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          352 CYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            8878874  667787778877777654  5567888999988766543 2   24789999998774

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.59  E-value=3e-13  Score=150.53  Aligned_cols=273  Identities=13%  Similarity=0.039  Sum_probs=183.8

Q ss_pred             CCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEE
Q 001163          357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA  436 (1134)
Q Consensus       357 ~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~  436 (1134)
                      ..|.+++|++++..+ +..+.++.++.|.   ++....                   +.++...+.+++|+|+|++++++
T Consensus         6 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~-------------------~~~~~~~~~~~~~~~~g~l~~~~   62 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSA-VPIISESELQTIT---AEPWLE-------------------ISKKGLQLEGLNFDRQGQLFLLD   62 (333)
T ss_dssp             CCCCBCCSCGGGGCS-SCCCCGGGSCEEE---CEEEEE-------------------EESSCCCEEEEEECTTSCEEEEE
T ss_pred             cccceeeecCCccce-eEEeecccCcccc---cceeEE-------------------EeccCccccCcEECCCCCEEEEE
Confidence            346778888887743 4556778888882   222211                   34466678999999999988888


Q ss_pred             eCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC----CeEEEEECCCCceeEEec--CCCcCE
Q 001163          437 YSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED----RVIKVWDAVTGTKQYIFE--GHESPV  510 (1134)
Q Consensus       437 s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d----~~i~iwd~~~~~~~~~~~--~h~~~v  510 (1134)
                      ..++.|.+||..+++...   ....+...+.+++|+++|+  ++++...+    +.|.+||..+++....+.  .+...+
T Consensus        63 ~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  137 (333)
T 2dg1_A           63 VFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI  137 (333)
T ss_dssp             TTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred             CCCCEEEEEeCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence            899999999998876433   1224667899999999998  66766666    689999988877653333  244568


Q ss_pred             EEEeccccCCccEEEEecC------CCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeC
Q 001163          511 YSICPHHKENIQFIFSTAT------DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE  584 (1134)
Q Consensus       511 ~~~~~~~~~~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~  584 (1134)
                      .++++++  +|.++++...      .+.|..||....... .+.........++|+|+++.++.+..   ....|.+||.
T Consensus       138 ~~i~~d~--~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~  211 (333)
T 2dg1_A          138 DDMVFDS--KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTET---TANRLHRIAL  211 (333)
T ss_dssp             EEEEECT--TSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred             cceEECC--CCCEEEEeccccccCCCceEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence            8888854  4567766553      244555554433322 22222235778999999997766542   1336999998


Q ss_pred             CC-CeeEEEe------cCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCC----CCCCcceEEEcCC
Q 001163          585 SE-GAVKRTY------HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG----GLQASPCIRFNKE  653 (1134)
Q Consensus       585 ~~-~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~v~~sp~  653 (1134)
                      .+ +.....+      .......+..++++++++.+++...++.|.+||. +++.+..+....    +...+.+++|+|+
T Consensus       212 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~d  290 (333)
T 2dg1_A          212 EDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPG  290 (333)
T ss_dssp             CTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred             cCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCC
Confidence            63 3322111      1111125778999999998888778899999998 566676665432    1125789999999


Q ss_pred             CcEEEEEECCC
Q 001163          654 GILLAVSTNDN  664 (1134)
Q Consensus       654 ~~~l~~~~~dg  664 (1134)
                      +..|++++.++
T Consensus       291 g~~L~v~~~~g  301 (333)
T 2dg1_A          291 TNQLIICSNDI  301 (333)
T ss_dssp             SCEEEEEEECG
T ss_pred             CCEEEEEeCcc
Confidence            87776666553

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.58  E-value=1.6e-12  Score=145.70  Aligned_cols=255  Identities=10%  Similarity=0.117  Sum_probs=170.6

Q ss_pred             CCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCC-CCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcC
Q 001163          530 DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK-EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT  608 (1134)
Q Consensus       530 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~  608 (1134)
                      ++.|.+||+..++... +    ..+..++|+|||++|+..+.+. ++...|++||+.+++.........   +..++|+|
T Consensus        42 ~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~~~wsp  113 (347)
T 2gop_A           42 ENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN---IRSLEWNE  113 (347)
T ss_dssp             EEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE---EEEEEECT
T ss_pred             cceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC---ccceeECC
Confidence            5678899988765433 2    4678899999999999876542 245569999999887666554332   78899999


Q ss_pred             CCCEEEEEeC---------------------------CCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEE
Q 001163          609 TKNRFLAAGD---------------------------EFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVST  661 (1134)
Q Consensus       609 ~~~~l~~~~~---------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~  661 (1134)
                      +++.|+.++.                           ...|++||+.+++.+..+..   . .+..++|+|+| +++++.
T Consensus       114 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~---~-~~~~~~~spdg-~~~~~~  188 (347)
T 2gop_A          114 DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK---P-RFSSGIWHRDK-IVVNVP  188 (347)
T ss_dssp             TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE---E-TTCEEEEETTE-EEEEEE
T ss_pred             CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC---C-CcccccCCCCe-EEEEEe
Confidence            9999988863                           25799999999887455543   2 67899999999 777776


Q ss_pred             CCC-------cEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCc
Q 001163          662 NDN-------GIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSR  734 (1134)
Q Consensus       662 ~dg-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  734 (1134)
                      .++       ...||.+.++ . ...+..                                                   
T Consensus       189 ~~~~~~~~~~~~~l~~~d~~-~-~~~l~~---------------------------------------------------  215 (347)
T 2gop_A          189 HREIIPQYFKFWDIYIWEDG-K-EEKMFE---------------------------------------------------  215 (347)
T ss_dssp             CCCSSCCSSCCEEEEEEETT-E-EEEEEE---------------------------------------------------
T ss_pred             cccccccccccccEEEeCCC-c-eEEecc---------------------------------------------------
Confidence            542       3344433321 1 111100                                                   


Q ss_pred             cCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCC--------eEEeeecC
Q 001163          735 NFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNA--------VHKLWKWP  806 (1134)
Q Consensus       735 ~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg--------~i~vw~~~  806 (1134)
                                                              + ..+..+  +|||+.|+.++.++        .+.+|   
T Consensus       216 ----------------------------------------~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~---  249 (347)
T 2gop_A          216 ----------------------------------------K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIY---  249 (347)
T ss_dssp             ----------------------------------------E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEE---
T ss_pred             ----------------------------------------C-cceeeE--CCCCCEEEEEEccccCCccccceEEEE---
Confidence                                                    1 223333  89999888776542        34444   


Q ss_pred             CCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeE-EEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCC
Q 001163          807 RNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPC-FALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPP  884 (1134)
Q Consensus       807 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~-v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~  884 (1134)
                                         |  ++..... ..+  +...+.. ++|+ |+ ++++++ ++.++|| +.+++....+. +.
T Consensus       250 -------------------d--~~~~~~l-~~~--~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~-~~  301 (347)
T 2gop_A          250 -------------------D--GKEVMGI-LDE--VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAK-GR  301 (347)
T ss_dssp             -------------------C--SSCEEES-STT--CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEEC-SS
T ss_pred             -------------------C--CCceEec-ccc--CCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEec-CC
Confidence                               3  2222211 222  5667776 8999 88 777777 8899999 87666644444 57


Q ss_pred             CCeEEEEEcCCCCcEEEEEeCCCcE-EEEEcccceEEEeccCccCc
Q 001163          885 PAATFLAFHPQDNNIIAIGMEDSSI-QIYNVRVDEVKTKLKGHQKR  929 (1134)
Q Consensus       885 ~~v~~l~~sp~~~~~la~g~~dg~i-~iwd~~~~~~~~~l~~h~~~  929 (1134)
                      ..|.+++|+|   .++++++.++.. .||.+. ++ ...+..|...
T Consensus       302 ~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~~  342 (347)
T 2gop_A          302 HWIMGFDVDE---IVVYLKETATRLRELFTWD-GE-EKQLTDYNDP  342 (347)
T ss_dssp             SEEEEEEESS---SEEEEEECSSSCCEEEEES-SS-EEECCCTTST
T ss_pred             CeEEeeeeeC---cEEEEEcCCCChHHheEeC-Cc-EEEeccccHh
Confidence            7899999997   577777777765 788876 55 4556666554

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.57  E-value=1.3e-08  Score=126.91  Aligned_cols=594  Identities=12%  Similarity=0.074  Sum_probs=335.1

Q ss_pred             CCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001163          356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV  435 (1134)
Q Consensus       356 ~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las  435 (1134)
                      ...|+++.-.++|..  -.|+.+| +..||-.+        ++.+... ......   ..-....|.++...++|..|-.
T Consensus        18 ~n~V~~I~qD~~G~l--WigT~~G-L~ryDG~~--------f~~~~~~-~~~~~~---~~l~~n~I~~i~~d~~g~~lWi   82 (781)
T 3v9f_A           18 NNYVLSITQDKQGFL--WFATEEG-LNKFDGTR--------FITYYKE-EQSSSV---QSITGNELNEVYTDPVQPVIWI   82 (781)
T ss_dssp             CSBEEEEEECTTSCE--EEEESSC-EEEECSSS--------EEEECCC-SSCSSS---CCCSCSCEEEEEECSSSSEEEE
T ss_pred             cCEeEEEEECCCCCE--EEccCCc-CccccCCc--------eEEEEcC-CCCCcc---ccccccccceEEEcCCCCEEEE
Confidence            357889999999973  4566666 66777432        2222210 000000   0012357999999998884555


Q ss_pred             EeCCCEEEEEEccCCceeeeee-e-eec---CCCCEEEEEEec--CCCceEEEEEeCCCeEEEEECCCCceeEEec----
Q 001163          436 AYSKHIVHLYTYHGGDELRNHL-E-IEA---HVGSVNDLAFSY--PNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE----  504 (1134)
Q Consensus       436 ~s~dg~v~iwd~~~~~~~~~~~-~-l~~---h~~~V~~v~~s~--~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~----  504 (1134)
                      |+.++-+..||..+++-.. .. . ...   ....|.++....  ++.   |..++.++.|..+|..+++......    
T Consensus        83 gt~~~Gl~~~d~~~~~f~~-~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~~~~~~~~  158 (781)
T 3v9f_A           83 ATQRAGLNAYNYETQSFSV-YQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTHYNKSTVP  158 (781)
T ss_dssp             EESSSCEEEEETTTTEEEE-ECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEEESTTTCT
T ss_pred             EeCCCCcceECCCCCeEEe-eccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEeeccCccc
Confidence            6677459999998765322 10 0 000   123688888776  664   4455545568899987765433211    


Q ss_pred             -CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeee-------cCCCCCeeEEEECcCCCEEEEEecCCCCC
Q 001163          505 -GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY-------DAPGHSSTMMAYSADGARLFSCGTNKEGE  576 (1134)
Q Consensus       505 -~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~  576 (1134)
                       -....|.++...  .++ .|..++.++-|..||..........       ......|.++...++|...+... .    
T Consensus       159 ~l~~~~i~~i~~d--~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~-~----  230 (781)
T 3v9f_A          159 ALPSEQTWTATEA--EDG-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS-K----  230 (781)
T ss_dssp             TCSCCCEEEEEEE--ETT-EEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET-T----
T ss_pred             CCCccceEEEEEC--CCC-CEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC-C----
Confidence             123457777653  333 4555666656888887654322211       11234688898888888766542 1    


Q ss_pred             eEEEEEeCCCCeeEEEecC------CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEe-------cC----
Q 001163          577 SYLVEWNESEGAVKRTYHG------LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID-------AD----  639 (1134)
Q Consensus       577 ~~i~~wd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~----  639 (1134)
                       -+.+||..+++.......      .....|.++...++|. |..|+..+-|.++|..++.......       ..    
T Consensus       231 -Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~  308 (781)
T 3v9f_A          231 -GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNY  308 (781)
T ss_dssp             -EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTT
T ss_pred             -cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCC
Confidence             289999887755432211      1233688888877764 5566665678899987765432211       10    


Q ss_pred             -CCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCC
Q 001163          640 -GGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGE  718 (1134)
Q Consensus       640 -~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  718 (1134)
                       -....|.++...++|.+ -.|+.++.|..++.....  +..+......                               
T Consensus       309 ~l~~~~v~~i~~D~~g~l-Wigt~~~Gl~~~~~~~~~--~~~~~~~~~~-------------------------------  354 (781)
T 3v9f_A          309 SLSNASARYIFQDSFNNI-WIGTWGGGINFISNAPPT--FHTWSYSPTQ-------------------------------  354 (781)
T ss_dssp             SBSSSCEEEEEECSSCCE-EEEEBSSCEEEECSSCCS--CEEEC----C-------------------------------
T ss_pred             CCCCCeEEEEEEeCCCCE-EEEecCCeEEEeCCCCCc--ceeeccCccc-------------------------------
Confidence             11345778888887764 456767777777765431  1111100000                               


Q ss_pred             CCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCC
Q 001163          719 RTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNA  798 (1134)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg  798 (1134)
                                                                  .      .........|.++...++|... .++.++
T Consensus       355 --------------------------------------------~------~~~~l~~~~v~~i~~d~~g~lW-igt~~~  383 (781)
T 3v9f_A          355 --------------------------------------------M------NESSLSNKVVSSVCDDGQGKLW-IGTDGG  383 (781)
T ss_dssp             --------------------------------------------C------CSSCCSSSCEEEEEECTTSCEE-EEEBSS
T ss_pred             --------------------------------------------c------ccCCCCCcceEEEEEcCCCCEE-EEeCCC
Confidence                                                        0      0000123568888888888744 455444


Q ss_pred             eEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEE
Q 001163          799 VHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMT  878 (1134)
Q Consensus       799 ~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~  878 (1134)
                      -+..|+...                      +...............|.+++..++|.+.+...++.|..+|..+++...
T Consensus       384 Gl~~~~~~~----------------------~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~  441 (781)
T 3v9f_A          384 GINVFENGK----------------------RVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQI  441 (781)
T ss_dssp             CEEEEETTE----------------------EEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEE
T ss_pred             cEEEEECCC----------------------CeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEE
Confidence            465665331                      1110000000013567899999988887775546779999987765433


Q ss_pred             Eec--CCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCc-----cCceEEEEEeeCCCEEEEEeCCCcE
Q 001163          879 TFM--PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGH-----QKRITGLAFSNTLNVLVSSGADSQL  951 (1134)
Q Consensus       879 ~~~--~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h-----~~~V~~l~~s~d~~~l~s~s~Dg~i  951 (1134)
                      ...  .....|.++...+ ++.+.+ |+. +-|.+|+..+++........     ...|.++...++|.+.+....+| +
T Consensus       442 ~~~~~~~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l  517 (781)
T 3v9f_A          442 IELEKNELLDVRVFYEDK-NKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-V  517 (781)
T ss_dssp             CCSTTTCCCCEEEEEECT-TSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-E
T ss_pred             eccCCCCCCeEEEEEECC-CCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-E
Confidence            221  1346799999887 665544 555 45888998876543322111     46789999988887766544345 8


Q ss_pred             EEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeecc-CC-CccCEEEEEEc
Q 001163          952 CVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVP-RE-ASGPITHATYS 1029 (1134)
Q Consensus       952 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~-~~-h~~~v~~~~~s 1029 (1134)
                      ..||..+++..   ......+.  ....|.++...++|.+.+++.+|-+..||..+++.. .+.. .+ ....|.++...
T Consensus       518 ~~~~~~~~~~~---~~~~~~~l--~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d  591 (781)
T 3v9f_A          518 GIYTPDMQLVR---KFNQYEGF--CSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQ-VFQRKEGLPNTHIRAISED  591 (781)
T ss_dssp             EEECTTCCEEE---EECTTTTC--SCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCE-EECGGGTCSCCCCCEEEEC
T ss_pred             EEEeCCCCeEE---EccCCCCC--CCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEE-EccccCCCCCceEEEEEEC
Confidence            88887764311   11111111  125688999999998776666554488988766532 2221 11 13467889998


Q ss_pred             cCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCCC
Q 001163         1030 CDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEA 1104 (1134)
Q Consensus      1030 ~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~ 1104 (1134)
                      ++|.+.++ +.+| |..|+..+++.. .+....-++.   .....-++...+ ++ .|..|+.+| +..+++...
T Consensus       592 ~~g~lW~~-t~~G-l~~~~~~~~~~~-~~~~~dGl~~---~~f~~~~~~~~~-~G-~l~~g~~~G-l~~f~p~~~  657 (781)
T 3v9f_A          592 KNGNIWAS-TNTG-ISCYITSKKCFY-TYDHSNNIPQ---GSFISGCVTKDH-NG-LIYFGSING-LCFFNPDIA  657 (781)
T ss_dssp             SSSCEEEE-CSSC-EEEEETTTTEEE-EECGGGTCCS---SCEEEEEEEECT-TS-CEEEEETTE-EEEECSCCG
T ss_pred             CCCCEEEE-cCCc-eEEEECCCCceE-EecccCCccc---cccccCceEECC-CC-EEEEECCCc-eEEEChhhc
Confidence            88987665 4455 777887766543 2221111111   112222334444 44 456677888 566776543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.56  E-value=1e-12  Score=145.30  Aligned_cols=279  Identities=11%  Similarity=0.006  Sum_probs=190.7

Q ss_pred             eCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeee
Q 001163          376 TNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRN  455 (1134)
Q Consensus       376 s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~  455 (1134)
                      +.+++|.+||..+++.....    +...      .   -.........+++. ++++.++...++.|.+||..+++.+..
T Consensus        14 ~~~~~l~~~d~~t~~~~~~i----~~~~------n---~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~   79 (328)
T 3dsm_A           14 YSNATLSYYDPATCEVENEV----FYRA------N---GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGR   79 (328)
T ss_dssp             SCCBEEEEEETTTTEEECSH----HHHH------H---SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEE
T ss_pred             CCCceEEEEECCCCEEhhhh----Hhhh------c---CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEE
Confidence            34889999999998765321    0000      0   01123456778874 455666666789999999999987663


Q ss_pred             eeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCC-----cCEEEEeccccCCccEEEEec-C
Q 001163          456 HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE-----SPVYSICPHHKENIQFIFSTA-T  529 (1134)
Q Consensus       456 ~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~~~l~s~s-~  529 (1134)
                         +. .......++++++++  ++++...++.|.+||..+++....+....     .....+++  . ++.++++.. .
T Consensus        80 ---i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~-~~~lyv~~~~~  150 (328)
T 3dsm_A           80 ---IT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y-GKYVYVNCWSY  150 (328)
T ss_dssp             ---EE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E-TTEEEEEECTT
T ss_pred             ---cC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E-CCEEEEEcCCC
Confidence               33 345688999999985  56666588999999999999887765333     13445665  2 334444443 4


Q ss_pred             CCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCC------CeEEEEEeCCCCeeEEEecCCCCCceEE
Q 001163          530 DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG------ESYLVEWNESEGAVKRTYHGLGKRSVGV  603 (1134)
Q Consensus       530 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~------~~~i~~wd~~~~~~~~~~~~~~~~~v~~  603 (1134)
                      ++.|.+||..+.+....+.. ......++++|+|++++++..+...      ...|.++|..+++....+..........
T Consensus       151 ~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~  229 (328)
T 3dsm_A          151 QNRILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSE  229 (328)
T ss_dssp             CCEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEE
T ss_pred             CCEEEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCcee
Confidence            89999999988766555544 2345678999999877665432100      2579999999999887776443336788


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcC-CCcEEEEE----ECCCcEEEEEccCCceeE
Q 001163          604 VQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK-EGILLAVS----TNDNGIKILANADGIRLL  678 (1134)
Q Consensus       604 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~~~----~~dg~i~iw~~~~~~~~~  678 (1134)
                      ++++|+++.++++..  .|.+||..+++................++++| ++.++++.    ..++.|.+|+.. + +.+
T Consensus       230 la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g-~~~  305 (328)
T 3dsm_A          230 VQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-G-KLI  305 (328)
T ss_dssp             EEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-C-CEE
T ss_pred             EEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-C-CEE
Confidence            999999999988765  89999999887642111111124567899999 55666665    568999999987 6 455


Q ss_pred             EEec
Q 001163          679 RTVE  682 (1134)
Q Consensus       679 ~~~~  682 (1134)
                      ..+.
T Consensus       306 ~~i~  309 (328)
T 3dsm_A          306 DEFY  309 (328)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.55  E-value=6e-13  Score=164.47  Aligned_cols=247  Identities=9%  Similarity=-0.023  Sum_probs=171.3

Q ss_pred             CCeeEEEEcCCCCeEEEEEeCCC----cEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCE
Q 001163          357 SAVKSMDFHPVQQILLVVGTNMG----DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL  432 (1134)
Q Consensus       357 ~~V~~v~fsp~g~~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~  432 (1134)
                      ..+..++|||||++|+.+.+.+|    .|++||+.+++.+.. .                 +  ....+..++|||||+.
T Consensus       125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-~-----------------~--~~~~~~~~~wspDg~~  184 (710)
T 2xdw_A          125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-V-----------------L--ERVKFSCMAWTHDGKG  184 (710)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-E-----------------E--EEECSCCEEECTTSSE
T ss_pred             EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-c-----------------c--cCcccceEEEEeCCCE
Confidence            35789999999997765555444    899999999986542 0                 1  1123678999999999


Q ss_pred             EEEEeCCCE----------------EEEEEccCCceee-eeeeeecCCCCEEEEEEecCCCceEEEEEeC-----CCeEE
Q 001163          433 FGVAYSKHI----------------VHLYTYHGGDELR-NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-----DRVIK  490 (1134)
Q Consensus       433 las~s~dg~----------------v~iwd~~~~~~~~-~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~-----d~~i~  490 (1134)
                      |+.++.++.                |++|++.+++... .......|...+..+.|+|||+.  |+.++.     +..|.
T Consensus       185 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~~l~  262 (710)
T 2xdw_A          185 MFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVNRLW  262 (710)
T ss_dssp             EEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCCEEE
T ss_pred             EEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCccEEE
Confidence            999988765                9999998876321 11122235666889999999994  554443     67899


Q ss_pred             EEECCC------Cc-eeEEecCCCcCEEEEeccccCCccEEEEecC-C---CcEEEEecCCCCc--eeeecCCCC--Cee
Q 001163          491 VWDAVT------GT-KQYIFEGHESPVYSICPHHKENIQFIFSTAT-D---GKIKAWLYDNLGS--RVDYDAPGH--SST  555 (1134)
Q Consensus       491 iwd~~~------~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-d---g~i~vwd~~~~~~--~~~~~~~~~--~v~  555 (1134)
                      +||+.+      +. ....+..+...+... |++  +|..|+..+. +   +.|.+||+.+...  ...+..+..  .+.
T Consensus       263 ~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~  339 (710)
T 2xdw_A          263 YCDLQQESNGITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLE  339 (710)
T ss_dssp             EEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEE
T ss_pred             EEECcccccccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEE
Confidence            999987      53 456666666666543 444  3355554443 2   3699999887642  233333333  577


Q ss_pred             EEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe----CCCeEEEEEcCCCc
Q 001163          556 MMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG----DEFMIKFWDMDNVN  631 (1134)
Q Consensus       556 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~  631 (1134)
                      .++|++++..+++...  ++...|++||+.+++.+..+..+. ..+..+.++|+++.++...    ..+.|+.||+.+++
T Consensus       340 ~~~~~~~~~lv~~~~~--~g~~~l~~~~~~~g~~~~~l~~~~-~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          340 WVACVRSNFLVLCYLH--DVKNTLQLHDLATGALLKIFPLEV-GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEETTTEEEEEEEE--TTEEEEEEEETTTCCEEEEECCCS-SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEEcCCEEEEEEEE--CCEEEEEEEECCCCCEEEecCCCC-ceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            8889877766666654  345678999998888777777763 3788889999987666442    45789999999887

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.55  E-value=1.1e-12  Score=145.81  Aligned_cols=241  Identities=10%  Similarity=0.038  Sum_probs=172.8

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCc
Q 001163          419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT  498 (1134)
Q Consensus       419 ~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~  498 (1134)
                      ..|.+++|++++..++..+.++.++.|.   ++...   .+..+...+.+++|+++|+  +++++..++.|.+||..+++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~g~--l~~~~~~~~~i~~~d~~~~~   77 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTIT---AEPWL---EISKKGLQLEGLNFDRQGQ--LFLLDVFEGNIFKINPETKE   77 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEE---EEESSCCCEEEEEECTTSC--EEEEETTTCEEEEECTTTCC
T ss_pred             cccceeeecCCccceeEEeecccCcccc---cceeE---EEeccCccccCcEECCCCC--EEEEECCCCEEEEEeCCCCc
Confidence            4577889999988888888888999992   33232   4666777889999999998  67788889999999998887


Q ss_pred             eeEEecCCCcCEEEEeccccCCccEEEEecCC----CcEEEEecCCCCceeeec--CCCCCeeEEEECcCCCEEEEEecC
Q 001163          499 KQYIFEGHESPVYSICPHHKENIQFIFSTATD----GKIKAWLYDNLGSRVDYD--APGHSSTMMAYSADGARLFSCGTN  572 (1134)
Q Consensus       499 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~  572 (1134)
                      .......+...+.++++++  +|.++++...+    +.|.+||.+.......+.  .....+..++++|+|+.+++...+
T Consensus        78 ~~~~~~~~~~~~~~i~~~~--dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~  155 (333)
T 2dg1_A           78 IKRPFVSHKANPAAIKIHK--DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRG  155 (333)
T ss_dssp             EEEEEECSSSSEEEEEECT--TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCC
T ss_pred             EEEEeeCCCCCcceEEECC--CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccc
Confidence            7665545677899998854  45777777666    689999988765542322  234578899999999887765421


Q ss_pred             --CCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEE-eCCCeEEEEEcCC-CceeEEE------ecCCCC
Q 001163          573 --KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAA-GDEFMIKFWDMDN-VNLLASI------DADGGL  642 (1134)
Q Consensus       573 --~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~-~~~~~~~------~~~~~~  642 (1134)
                        .+....|..+|..+++........  ..+..++|+|+++.++.+ +.++.|++||..+ +..+..+      ...+ .
T Consensus       156 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~  232 (333)
T 2dg1_A          156 YSTNPLGGVYYVSPDFRTVTPIIQNI--SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-H  232 (333)
T ss_dssp             BTTBCCEEEEEECTTSCCEEEEEEEE--SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-S
T ss_pred             cccCCCceEEEEeCCCCEEEEeecCC--CcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC-C
Confidence              112356888887766554332221  146789999999866555 4678999999964 4333221      1111 1


Q ss_pred             CCcceEEEcCCCcEEEEEECCCcEEEEEcc
Q 001163          643 QASPCIRFNKEGILLAVSTNDNGIKILANA  672 (1134)
Q Consensus       643 ~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~  672 (1134)
                      ..+..++++++|+++++...++.|.+|+..
T Consensus       233 ~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          233 EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             SEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             CCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence            356789999999988888888999999873

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.55  E-value=4.8e-13  Score=164.75  Aligned_cols=249  Identities=11%  Similarity=-0.053  Sum_probs=167.1

Q ss_pred             ccCCCCEEEEEEcCCCCEEEE-----EeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCe-
Q 001163          415 SDYTASVNRVMWSPDGTLFGV-----AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV-  488 (1134)
Q Consensus       415 ~~h~~~V~~l~~spd~~~las-----~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~-  488 (1134)
                      .+|...+.+++|||||++||.     |+.+..|++||+.+++.+.. ..+...  ....++|+|||+  .|+.++.|.. 
T Consensus       117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~~--~~~~~~wspDg~--~l~~~~~d~~~  191 (695)
T 2bkl_A          117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-DVIEGG--KYATPKWTPDSK--GFYYEWLPTDP  191 (695)
T ss_dssp             SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-CCBSCC--TTCCCEECTTSS--EEEEEECCCCT
T ss_pred             cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-cccCcc--cccceEEecCCC--EEEEEEecCCC
Confidence            467778999999999999994     44457899999999875411 012211  126799999999  6888887766 


Q ss_pred             ------------EEEEECCCCc----eeEEecCCCcCEEEEeccccCCccEEEEecCCC----cEEEEecCCCCceeeec
Q 001163          489 ------------IKVWDAVTGT----KQYIFEGHESPVYSICPHHKENIQFIFSTATDG----KIKAWLYDNLGSRVDYD  548 (1134)
Q Consensus       489 ------------i~iwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg----~i~vwd~~~~~~~~~~~  548 (1134)
                                  |++|++.++.    ++.....|...+.++.|++  ||++|+..+.++    .|.+|+..... ...+.
T Consensus       192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~  268 (695)
T 2bkl_A          192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR--DGKYLFVYILRGWSENDVYWKRPGEKD-FRLLV  268 (695)
T ss_dssp             TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT--TSCCEEEEEEETTTEEEEEEECTTCSS-CEEEE
T ss_pred             CCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC--CCCEEEEEEeCCCCceEEEEEcCCCCc-eEEee
Confidence                        9999998876    3444445666788888754  557777766555    56666554333 33333


Q ss_pred             CCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCee---EEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEE
Q 001163          549 APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV---KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFW  625 (1134)
Q Consensus       549 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  625 (1134)
                      .+...+....+ ++|. ++..+.....+..|.+||+.++..   ...+..+....+..++++ ++..+++...|+..++|
T Consensus       269 ~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~  345 (695)
T 2bkl_A          269 KGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVR  345 (695)
T ss_dssp             ECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred             cCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence            33444555555 6777 655544333467899999988753   333433324367778887 66777888889988888


Q ss_pred             EcC-CCceeEEEecCCCCCCcceEEEcCCCcEEEEEE----CCCcEEEEEccCCc
Q 001163          626 DMD-NVNLLASIDADGGLQASPCIRFNKEGILLAVST----NDNGIKILANADGI  675 (1134)
Q Consensus       626 d~~-~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~----~dg~i~iw~~~~~~  675 (1134)
                      .+. +++....+..+. ...+..++++|++..++...    ..++|++||+.++.
T Consensus       346 ~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          346 VATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             EEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             EEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            654 455555554321 34567788999987766433    24789999998874

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.55  E-value=7e-09  Score=129.41  Aligned_cols=540  Identities=10%  Similarity=0.041  Sum_probs=310.4

Q ss_pred             CCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC--CCCEEE
Q 001163          357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGTLFG  434 (1134)
Q Consensus       357 ~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~~~la  434 (1134)
                      ..|.++...++|..| -+|+.++.+..||..+++...-      ....    ...  ..-....|.++....  +|.+.+
T Consensus        66 n~I~~i~~d~~g~~l-Wigt~~~Gl~~~d~~~~~f~~~------~~~~----~~~--~~l~~~~i~~i~~d~~~~g~lwi  132 (781)
T 3v9f_A           66 NELNEVYTDPVQPVI-WIATQRAGLNAYNYETQSFSVY------QYNP----EDP--QSLITNDVTHITSSVQAGKGLWV  132 (781)
T ss_dssp             SCEEEEEECSSSSEE-EEEESSSCEEEEETTTTEEEEE------CCCT----TCS--SSCSCSCEEEEEECSSTTSEEEE
T ss_pred             cccceEEEcCCCCEE-EEEeCCCCcceECCCCCeEEee------cccc----CCC--CCcccCcceEEEecCccCCCEEE
Confidence            358999999988722 3466665699999887653221      0000    000  001124799998887  666544


Q ss_pred             EEeCCCEEEEEEccCCceeeeeee--ee-cCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEec-------
Q 001163          435 VAYSKHIVHLYTYHGGDELRNHLE--IE-AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE-------  504 (1134)
Q Consensus       435 s~s~dg~v~iwd~~~~~~~~~~~~--l~-~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-------  504 (1134)
                       ++.++-|..+|..+++... ...  .. -....|.++...++|.   |..+..++-+..+|..+++...-..       
T Consensus       133 -~t~~~gl~~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~  207 (781)
T 3v9f_A          133 -CTYYRGIEYLDIATGKFTH-YNKSTVPALPSEQTWTATEAEDGK---LYIGHVEGGLSILSLNDKSVKHFVHDPQNPNS  207 (781)
T ss_dssp             -EESSSCEEEEETTTTEEEE-ESTTTCTTCSCCCEEEEEEEETTE---EEEEETTTEEEEEETTTTEEEEECC-------
T ss_pred             -EECCCCeeEEECCCCeEEe-eccCcccCCCccceEEEEECCCCC---EEEEecCCCeEEEcCCCCceEeeecCCCCccc
Confidence             5534448889987765321 110  00 1234588888887776   4556666578899987765432111       


Q ss_pred             CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec-------CCCCCeeEEEECcCCCEEEEEecCCCCCe
Q 001163          505 GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-------APGHSSTMMAYSADGARLFSCGTNKEGES  577 (1134)
Q Consensus       505 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~~~~~~~  577 (1134)
                      -....|.++..  +.++.+. .++.+ -+.+||..+........       .....|.++...++|...+....++    
T Consensus       208 l~~~~i~~i~~--d~~g~lw-igt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~G----  279 (781)
T 3v9f_A          208 LPGNDVRCIYK--DTNGNIW-IGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNG----  279 (781)
T ss_dssp             -CCSSEEEEEE--CTTCCEE-EEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESSSC----
T ss_pred             CCCCceeEEEE--cCCCCEE-EEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCC----
Confidence            01346887765  3444444 45544 58888876443222111       1234788998888887655432122    


Q ss_pred             EEEEEeCCCCeeEEEec-------------CCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEe-------
Q 001163          578 YLVEWNESEGAVKRTYH-------------GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID-------  637 (1134)
Q Consensus       578 ~i~~wd~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------  637 (1134)
                       |.++|..++.......             ......|.++....+|. |..|+.++-|..++..++.......       
T Consensus       280 -l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~  357 (781)
T 3v9f_A          280 -IMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNE  357 (781)
T ss_dssp             -EEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCS
T ss_pred             -eEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCcccccc
Confidence             8889988765432211             11223688888888775 5566767778899887654333211       


Q ss_pred             cCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcC
Q 001163          638 ADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLG  717 (1134)
Q Consensus       638 ~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  717 (1134)
                      ..-....|.++...++|.+. .|+.++.|..|+..++  ....+..                                  
T Consensus       358 ~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~--~~~~~~~----------------------------------  400 (781)
T 3v9f_A          358 SSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKR--VAIYNKE----------------------------------  400 (781)
T ss_dssp             SCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEE--EEECC------------------------------------
T ss_pred             CCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCC--eEEEccC----------------------------------
Confidence            01123457888888777654 5666667888876542  1110000                                  


Q ss_pred             CCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccC
Q 001163          718 ERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASN  797 (1134)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~d  797 (1134)
                                                                           +.......|.++...++|...+ ++.+
T Consensus       401 -----------------------------------------------------~~~~~~~~v~~i~~d~~g~lWi-gt~~  426 (781)
T 3v9f_A          401 -----------------------------------------------------NRELLSNSVLCSLKDSEGNLWF-GTYL  426 (781)
T ss_dssp             --------------------------------------------------------CCCSBEEEEEECTTSCEEE-EETT
T ss_pred             -----------------------------------------------------CCCCCCcceEEEEECCCCCEEE-Eecc
Confidence                                                                 0001335688888888887554 5554


Q ss_pred             CeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEE
Q 001163          798 AVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM  877 (1134)
Q Consensus       798 g~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~  877 (1134)
                      +.+..++..                      +++........ .....|.++...++|.+.+... +.|..||..+++..
T Consensus       427 ~Gl~~~~~~----------------------~~~~~~~~~~~-~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~  482 (781)
T 3v9f_A          427 GNISYYNTR----------------------LKKFQIIELEK-NELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVI  482 (781)
T ss_dssp             EEEEEECSS----------------------SCEEEECCSTT-TCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCC
T ss_pred             CCEEEEcCC----------------------CCcEEEeccCC-CCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEE
Confidence            456555432                      22221111100 1346789999998888666554 67999998876654


Q ss_pred             EEecCC-----CCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccC---ccCceEEEEEeeCCCEEEEEeCCC
Q 001163          878 TTFMPP-----PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKG---HQKRITGLAFSNTLNVLVSSGADS  949 (1134)
Q Consensus       878 ~~~~~~-----~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~---h~~~V~~l~~s~d~~~l~s~s~Dg  949 (1134)
                      ......     ...|.++...+ ++.+.+ |+.++-+..|+..+++...-...   ....|.++...++|.+.++.. +|
T Consensus       483 ~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~G  559 (781)
T 3v9f_A          483 HHYDTSNSQLLENFVRSIAQDS-EGRFWI-GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EG  559 (781)
T ss_dssp             EEECTTTSSCSCSCEEEEEECT-TCCEEE-EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TE
T ss_pred             ecccCcccccccceeEEEEEcC-CCCEEE-EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CC
Confidence            433222     35689999988 676555 45544578888876654332111   245688999988888766554 66


Q ss_pred             cEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeecc-CC---CccCEEE
Q 001163          950 QLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVP-RE---ASGPITH 1025 (1134)
Q Consensus       950 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~-~~---h~~~v~~ 1025 (1134)
                      .|..||..+++.   .......+-.  ...+.++...++|++.+++ ++.|..|+..+.+.. .+.. .+   ..-...+
T Consensus       560 lv~~~d~~~~~~---~~~~~~~gl~--~~~i~~i~~d~~g~lW~~t-~~Gl~~~~~~~~~~~-~~~~~dGl~~~~f~~~~  632 (781)
T 3v9f_A          560 LVCFPSARNFDY---QVFQRKEGLP--NTHIRAISEDKNGNIWAST-NTGISCYITSKKCFY-TYDHSNNIPQGSFISGC  632 (781)
T ss_dssp             EEEESCTTTCCC---EEECGGGTCS--CCCCCEEEECSSSCEEEEC-SSCEEEEETTTTEEE-EECGGGTCCSSCEEEEE
T ss_pred             ceEEECCCCCcE---EEccccCCCC--CceEEEEEECCCCCEEEEc-CCceEEEECCCCceE-EecccCCccccccccCc
Confidence            448888876542   2222222222  1457889999999866655 444777887755432 2221 11   1112356


Q ss_pred             EEEccCCCEEEEEecCCcEEEeecCC
Q 001163         1026 ATYSCDSQSIYVAFEEGSVGVLTAST 1051 (1134)
Q Consensus      1026 ~~~s~dg~~l~s~s~Dg~i~vwd~~~ 1051 (1134)
                      +...+||.+++ |+.+| +..++-..
T Consensus       633 ~~~~~~G~l~~-g~~~G-l~~f~p~~  656 (781)
T 3v9f_A          633 VTKDHNGLIYF-GSING-LCFFNPDI  656 (781)
T ss_dssp             EEECTTSCEEE-EETTE-EEEECSCC
T ss_pred             eEECCCCEEEE-ECCCc-eEEEChhh
Confidence            77788888666 55677 55566443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.55  E-value=2.2e-12  Score=140.62  Aligned_cols=241  Identities=10%  Similarity=0.022  Sum_probs=171.4

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la  434 (1134)
                      +.....+++|+|+|+.+++++..++.|..||..++  ...                   +..+...+.+++++|+|++++
T Consensus        26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~-------------------~~~~~~~~~~l~~~~dg~l~v   84 (296)
T 3e5z_A           26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP-------------------EMHPSHHQNGHCLNKQGHLIA   84 (296)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE-------------------EESSCSSEEEEEECTTCCEEE
T ss_pred             CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE-------------------EECCCCCcceeeECCCCcEEE
Confidence            56678899999999978889999999999999877  221                   234667899999999999988


Q ss_pred             EEeCCCEEEEEEccCCceeeeeeeeec-CCCCEEEEEEecCCCceEEEE----Ee-------------CCCeEEEEECCC
Q 001163          435 VAYSKHIVHLYTYHGGDELRNHLEIEA-HVGSVNDLAFSYPNKQLSVVT----CG-------------EDRVIKVWDAVT  496 (1134)
Q Consensus       435 s~s~dg~v~iwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~~~~~~~l~s----~s-------------~d~~i~iwd~~~  496 (1134)
                      +...++.|.+||..+++.........+ ....+..++++|+|+  ++++    |+             ..+.|..+|.. 
T Consensus        85 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-  161 (296)
T 3e5z_A           85 CSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-  161 (296)
T ss_dssp             EETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred             EecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEECCC-
Confidence            887788999999988764321111111 123567899999998  6776    32             13456666644 


Q ss_pred             CceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCC-CCc---eeeecCCCCCeeEEEECcCCCEEEEEecC
Q 001163          497 GTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN-LGS---RVDYDAPGHSSTMMAYSADGARLFSCGTN  572 (1134)
Q Consensus       497 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~~  572 (1134)
                      ++ +..+..+......++|++  +++.+++.+.++.|.+|++.. +..   ...+......+..++++++|+..++.  +
T Consensus       162 g~-~~~~~~~~~~~~gi~~s~--dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~  236 (296)
T 3e5z_A          162 GT-LSAPIRDRVKPNGLAFLP--SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--G  236 (296)
T ss_dssp             SC-EEEEECCCSSEEEEEECT--TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--T
T ss_pred             CC-EEEeecCCCCCccEEECC--CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--C
Confidence            44 344555666788898855  446778888889999999873 322   12222334456789999999877665  2


Q ss_pred             CCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEE-cCCCCEEEEEeCCCeEEEEEcCCCce
Q 001163          573 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQF-DTTKNRFLAAGDEFMIKFWDMDNVNL  632 (1134)
Q Consensus       573 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~  632 (1134)
                          ..|.+||.. ++.+..+..+..  +.+++| +|+++.|++++.+ .+..++..+.+.
T Consensus       237 ----~~v~~~~~~-g~~~~~~~~~~~--~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~  289 (296)
T 3e5z_A          237 ----DGVHVLTPD-GDELGRVLTPQT--TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL  289 (296)
T ss_dssp             ----TEEEEECTT-SCEEEEEECSSC--CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred             ----CeEEEECCC-CCEEEEEECCCC--ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence                249999986 777777776654  778889 5888889988875 455556665543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.54  E-value=4.1e-11  Score=130.76  Aligned_cols=282  Identities=9%  Similarity=-0.024  Sum_probs=192.5

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la  434 (1134)
                      +...+.+++++++|+ +.++...++.|.+||.. ++.... .                 ...+...+.+++++++|++++
T Consensus        13 ~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~-~-----------------~~~~~~~~~~i~~~~~g~l~v   72 (299)
T 2z2n_A           13 QDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY-P-----------------LPTPDAKVMCLTISSDGEVWF   72 (299)
T ss_dssp             SSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE-E-----------------CSSTTCCEEEEEECTTSCEEE
T ss_pred             cCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe-c-----------------CCcccCceeeEEECCCCCEEE
Confidence            346799999999998 55555557899999988 543221 0                 122456899999999999888


Q ss_pred             EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeE-EecCCCcCEEEE
Q 001163          435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY-IFEGHESPVYSI  513 (1134)
Q Consensus       435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~~h~~~v~~~  513 (1134)
                      +...++.|..||.. ++ .... .+......+.++++.++|.  ++++...++.|.+||. +++... ....+...+.++
T Consensus        73 ~~~~~~~i~~~~~~-g~-~~~~-~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i  146 (299)
T 2z2n_A           73 TENAANKIGRITKK-GI-IKEY-TLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFI  146 (299)
T ss_dssp             EETTTTEEEEECTT-SC-EEEE-ECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred             eCCCCCeEEEECCC-Cc-EEEE-eCCCcCCCceeeEECCCCC--EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceE
Confidence            88778899999986 33 2211 2333456789999999987  6777777889999998 665443 233345668888


Q ss_pred             eccccCCccEEEEecCCCcEEEEecCCCCceee-ecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEE
Q 001163          514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD-YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRT  592 (1134)
Q Consensus       514 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~  592 (1134)
                      ++.  ++|.++++...++.|..||. ++..... .......+..++++++|+..++...    ...|..||. +++....
T Consensus       147 ~~~--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----~~~i~~~~~-~g~~~~~  218 (299)
T 2z2n_A          147 TLG--SDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII----GNKIGRITT-SGEITEF  218 (299)
T ss_dssp             EEC--TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEEE
T ss_pred             EEc--CCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC----CceEEEECC-CCcEEEE
Confidence            875  45577777777789999998 4433322 2223446789999999986665432    335999999 6664432


Q ss_pred             ecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEcc
Q 001163          593 YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA  672 (1134)
Q Consensus       593 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~  672 (1134)
                      ........+..++++++++.+++...++.|.+||. +++ +..+....+...+.++++ ++|.+.++.. .+.+..++..
T Consensus       219 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~  294 (299)
T 2z2n_A          219 KIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLI  294 (299)
T ss_dssp             ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC
T ss_pred             ECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcC
Confidence            12212236889999999986666657889999998 454 344433333456788999 8887766554 5677777765


Q ss_pred             CC
Q 001163          673 DG  674 (1134)
Q Consensus       673 ~~  674 (1134)
                      ++
T Consensus       295 ~~  296 (299)
T 2z2n_A          295 KD  296 (299)
T ss_dssp             --
T ss_pred             cc
Confidence            43

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.53  E-value=1.3e-12  Score=144.28  Aligned_cols=243  Identities=14%  Similarity=0.109  Sum_probs=171.6

Q ss_pred             CCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEe
Q 001163          844 DAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTK  922 (1134)
Q Consensus       844 ~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~  922 (1134)
                      .....+++.. +++.++.. ++.|.+||..+++.+.++. .......+++++ +++++++...++.|.+||..+++....
T Consensus        44 ~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~  120 (328)
T 3dsm_A           44 DVAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGY  120 (328)
T ss_dssp             SCEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred             ccceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEE
Confidence            3456777743 44444444 7999999999999998885 456789999988 676555554899999999999988776


Q ss_pred             ccCcc-----CceEEEEEeeCCCEEEEEe-CCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-
Q 001163          923 LKGHQ-----KRITGLAFSNTLNVLVSSG-ADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-  995 (1134)
Q Consensus       923 l~~h~-----~~V~~l~~s~d~~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-  995 (1134)
                      +....     .....+++ .+++.+++.. .++.|.+||..+++...  .+..  +     .....++++|||++++++ 
T Consensus       121 i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~--~i~~--g-----~~p~~i~~~~dG~l~v~~~  190 (328)
T 3dsm_A          121 IECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVD--ELTI--G-----IQPTSLVMDKYNKMWTITD  190 (328)
T ss_dssp             EECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEE--EEEC--S-----SCBCCCEECTTSEEEEEBC
T ss_pred             EEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEE--EEEc--C-----CCccceEEcCCCCEEEEEC
Confidence            65433     14556777 4454444443 48899999999866332  1222  2     124678999999977774 


Q ss_pred             ee----------ceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccC
Q 001163          996 HE----------TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLP 1065 (1134)
Q Consensus       996 ~d----------~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~ 1065 (1134)
                      .+          +.|.++|..+++....+.... ......++|+||+++|+++..  .|.+||..+++.....    +++
T Consensus       191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~----~~~  263 (328)
T 3dsm_A          191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRP----FLE  263 (328)
T ss_dssp             CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSC----SBC
T ss_pred             CCccCCccccCCceEEEEECCCCeEEEEEecCC-CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeee----eec
Confidence            33          689999999998877665321 246889999999999988765  8999999998864211    111


Q ss_pred             CCCCCCceeEEEEecCCCCCEEEEE----ecCCcEEEEeCCCCCCCccC
Q 001163         1066 TNPSLRVYPLVIAGNPTDPNQFALG----LTDGGVYIIEPLEAEGRWGT 1110 (1134)
Q Consensus      1066 ~~h~~~v~~~~~~~~p~~~~~l~s~----~~Dg~v~vW~~~~~~~~~~~ 1110 (1134)
                      . +...  +-.++++|+++.++++.    ..+++|.+|+.. .+..|.+
T Consensus       264 ~-~~~~--p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i  308 (328)
T 3dsm_A          264 F-RDTK--YYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF  308 (328)
T ss_dssp             C-CSSC--EEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred             C-CCCc--eEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence            1 1122  44458888777788877    788999999987 5555544

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.53  E-value=2.6e-13  Score=167.19  Aligned_cols=241  Identities=11%  Similarity=0.040  Sum_probs=162.9

Q ss_pred             CCCCeeEEEEcCCCCeEEEee------CCeEEEEEccCCeEEEEecCCCCCe--EEEEEcCCCCcEEEEEeCCCc-----
Q 001163          842 PEDAVPCFALSKNDSYVMSAS------GGKISLFNMMTFKTMTTFMPPPPAA--TFLAFHPQDNNIIAIGMEDSS-----  908 (1134)
Q Consensus       842 h~~~v~~v~~s~dg~~la~~s------dg~i~lwd~~~~~~~~~~~~~~~~v--~~l~~sp~~~~~la~g~~dg~-----  908 (1134)
                      |...+..++|||||++||.+.      +.+|++||+.+++.+.  ..+...+  ..++|+| ||+.|+.++.|..     
T Consensus       119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~  195 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTP-DSKGFYYEWLPTDPSIKV  195 (695)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECT-TSSEEEEEECCCCTTSCG
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEec-CCCEEEEEEecCCCCCcc
Confidence            556788999999999999543      2579999999988641  1122222  6899999 8899999888776     


Q ss_pred             --------EEEEEcccce----EEEeccCccCceEEEEEeeCCCEEEEEeCCC----cEEEEECCCCccccceeeeecCC
Q 001163          909 --------IQIYNVRVDE----VKTKLKGHQKRITGLAFSNTLNVLVSSGADS----QLCVWSTDGWEKQASKFLTIPNG  972 (1134)
Q Consensus       909 --------i~iwd~~~~~----~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg----~i~iwd~~~~~~~~~~~~~~~~~  972 (1134)
                              |++|++.+++    ++.....|...+.++.|||||++|+.++.++    .|.+|+..+++   ...+.... 
T Consensus       196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~---~~~l~~~~-  271 (695)
T 2bkl_A          196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD---FRLLVKGV-  271 (695)
T ss_dssp             GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS---CEEEEECS-
T ss_pred             ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc---eEEeecCC-
Confidence                    9999998765    4455556767889999999999999887666    67777654433   12222211 


Q ss_pred             CCCCCCCceEEEEcCCCCEEEE-Ee----eceEEEEeCCCccc--ceeeccCCCccCEEEEEEccCCCEEEEEecCCcEE
Q 001163          973 RTASALADTRVQFHLDQTHLLA-VH----ETQIAIYEAPKLEC--LKQFVPREASGPITHATYSCDSQSIYVAFEEGSVG 1045 (1134)
Q Consensus       973 ~~~~~~~v~~l~fs~dg~~l~~-~~----d~~i~iwd~~~~~~--~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~ 1045 (1134)
                           ..+....+ ++|. ++. +.    ++.|.+||+.+++.  ...+....+...+.+++|+ ++.++++...|+..+
T Consensus       272 -----~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~  343 (695)
T 2bkl_A          272 -----GAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSE  343 (695)
T ss_dssp             -----SCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEE
T ss_pred             -----CceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence                 12445555 6777 555 43    47899999988754  2344422225568889998 788899999999988


Q ss_pred             EeecC-CCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEE-EE---ecCCcEEEEeCCCCCC
Q 001163         1046 VLTAS-TLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFA-LG---LTDGGVYIIEPLEAEG 1106 (1134)
Q Consensus      1046 vwd~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~-s~---~~Dg~v~vW~~~~~~~ 1106 (1134)
                      +|.+. +++....+...      +.+.|..+  +++| +++.++ +.   ...++|++||+...+.
T Consensus       344 l~~~~~~g~~~~~l~~~------~~~~v~~~--~~s~-d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          344 VRVATLKGKPVRTVQLP------GVGAASNL--MGLE-DLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             EEEEETTCCEEEECCCS------SSSEECCC--BSCT-TCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EEEEeCCCCeeEEecCC------CCeEEEEe--ecCC-CCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            88765 35444333311      12334444  6778 566555 33   2357899999876553

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.53  E-value=2.8e-11  Score=135.32  Aligned_cols=203  Identities=9%  Similarity=-0.003  Sum_probs=140.7

Q ss_pred             eEEEEcCCCCeEEEee---CCeEEEEEccCCeEEEE-ecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEe
Q 001163          847 PCFALSKNDSYVMSAS---GGKISLFNMMTFKTMTT-FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTK  922 (1134)
Q Consensus       847 ~~v~~s~dg~~la~~s---dg~i~lwd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~  922 (1134)
                      ..++++|||++|++++   +++|.++| .+++.+.+ +....    ++.+.|++.+.+++.+.||.+.+++. +++.+..
T Consensus       128 ~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~  201 (373)
T 2mad_H          128 WMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA  201 (373)
T ss_pred             cceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE
Confidence            4788899999888775   36799999 99988877 65321    24555645567777888999999999 8876633


Q ss_pred             cc-----CccCce-EEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCC----CCCCCCceEEEEcCCCCEE
Q 001163          923 LK-----GHQKRI-TGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGR----TASALADTRVQFHLDQTHL  992 (1134)
Q Consensus       923 l~-----~h~~~V-~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~v~~l~fs~dg~~l  992 (1134)
                      ..     ....++ ....+.+++..++..+..+.+.+.|+.+........+......    .........+++++|++.+
T Consensus       202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~l  281 (373)
T 2mad_H          202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGI  281 (373)
T ss_pred             EeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEE
Confidence            21     112222 3356777776655555788999999976432211111111100    0001234458899999988


Q ss_pred             EEEe-----------eceEEEEeCCCcccceeeccCCCccCEEEEEEccCCC-EEEEEe-cCCcEEEeecCCCcceeec
Q 001163          993 LAVH-----------ETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQ-SIYVAF-EEGSVGVLTASTLRLRCRI 1058 (1134)
Q Consensus       993 ~~~~-----------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~s~s-~Dg~i~vwd~~~~~~~~~~ 1058 (1134)
                      +++.           ++.|.++|..+++.+..+...   ....+++|+|||+ +++++. .++.|.+||+.+++.+.++
T Consensus       282 yV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g---~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          282 YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG---HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             EEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC---CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            8842           257999999999999888642   3688999999999 777777 4899999999999998773

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.52  E-value=7e-11  Score=128.87  Aligned_cols=280  Identities=11%  Similarity=0.037  Sum_probs=190.0

Q ss_pred             CCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 001163          551 GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV  630 (1134)
Q Consensus       551 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  630 (1134)
                      ...+.+++++++|+..++...    ...|..||.. ++............+..+++++++..+++...++.|..||.. +
T Consensus        14 ~~~~~~i~~d~~g~l~v~~~~----~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g   87 (299)
T 2z2n_A           14 DTGPYGITVSDKGKVWITQHK----ANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G   87 (299)
T ss_dssp             SCCEEEEEECTTSCEEEEETT----TTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             CCCccceEECCCCCEEEEecC----CCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence            457889999999997776532    3359999988 654432222223378899999999888777778899999986 4


Q ss_pred             ceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhccccccccccccc
Q 001163          631 NLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANA  710 (1134)
Q Consensus       631 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  710 (1134)
                      + +..+........+..++++++|.++++...++.|..|+. ++..  ..+..                           
T Consensus        88 ~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~--~~~~~---------------------------  136 (299)
T 2z2n_A           88 I-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI--REYEL---------------------------  136 (299)
T ss_dssp             C-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE--EEEEC---------------------------
T ss_pred             c-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE--EEecC---------------------------
Confidence            3 333332222446789999999988887777888988887 3311  11100                           


Q ss_pred             ccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCce
Q 001163          711 NVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLA  790 (1134)
Q Consensus       711 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~  790 (1134)
                                                                                  +  .....+..+++.++|+.
T Consensus       137 ------------------------------------------------------------~--~~~~~~~~i~~~~~g~l  154 (299)
T 2z2n_A          137 ------------------------------------------------------------P--NKGSYPSFITLGSDNAL  154 (299)
T ss_dssp             ------------------------------------------------------------S--STTCCEEEEEECTTSCE
T ss_pred             ------------------------------------------------------------C--CCCCCCceEEEcCCCCE
Confidence                                                                        0  01235678899999987


Q ss_pred             eeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEE
Q 001163          791 ILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLF  869 (1134)
Q Consensus       791 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lw  869 (1134)
                      .++...++.+..|+.                       +++........  ....+..++++++|++.++.. ++.|.+|
T Consensus       155 ~v~~~~~~~i~~~~~-----------------------~g~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~~~~i~~~  209 (299)
T 2z2n_A          155 WFTENQNNAIGRITE-----------------------SGDITEFKIPT--PASGPVGITKGNDDALWFVEIIGNKIGRI  209 (299)
T ss_dssp             EEEETTTTEEEEECT-----------------------TCCEEEEECSS--TTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred             EEEeCCCCEEEEEcC-----------------------CCcEEEeeCCC--CCCcceeEEECCCCCEEEEccCCceEEEE
Confidence            777766788887754                       22222111111  345678999999999777665 7899999


Q ss_pred             EccCCeEEEE-ecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEe-ccCccCceEEEEEeeCCCEEEEEeC
Q 001163          870 NMMTFKTMTT-FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTK-LKGHQKRITGLAFSNTLNVLVSSGA  947 (1134)
Q Consensus       870 d~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~-l~~h~~~V~~l~~s~d~~~l~s~s~  947 (1134)
                      |. +++.... ...+...+.++++++ +++++++...++.|.+||. +++.... +..+...+.++++ +++.++++.. 
T Consensus       210 ~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-  284 (299)
T 2z2n_A          210 TT-SGEITEFKIPTPNARPHAITAGA-GIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME-  284 (299)
T ss_dssp             CT-TCCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-
T ss_pred             CC-CCcEEEEECCCCCCCceeEEECC-CCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec-
Confidence            99 6664432 333456789999999 7887776667889999998 4553322 3455677999999 8888877765 


Q ss_pred             CCcEEEEECCCC
Q 001163          948 DSQLCVWSTDGW  959 (1134)
Q Consensus       948 Dg~i~iwd~~~~  959 (1134)
                      .+.+..++.+++
T Consensus       285 ~~~l~~~~~~~~  296 (299)
T 2z2n_A          285 CDKIGKLTLIKD  296 (299)
T ss_dssp             TTEEEEEEEC--
T ss_pred             CCcEEEEEcCcc
Confidence            566777887663

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.52  E-value=3e-12  Score=139.62  Aligned_cols=237  Identities=11%  Similarity=0.055  Sum_probs=166.1

Q ss_pred             cccCCCCEEEEEEcCCCC-EEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEE
Q 001163          414 SSDYTASVNRVMWSPDGT-LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW  492 (1134)
Q Consensus       414 ~~~h~~~V~~l~~spd~~-~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  492 (1134)
                      +..+.....+++|+|+|+ +++++..++.|..||..++  ..   .+..+...+.+++|+++|+  ++++...++.|.+|
T Consensus        23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~   95 (296)
T 3e5z_A           23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQ   95 (296)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEE
T ss_pred             EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEE
Confidence            344566788999999998 7888888999999999887  33   3556778899999999998  67777777899999


Q ss_pred             ECCCCceeEEecCC----CcCEEEEeccccCCccEEEE----ec-------------CCCcEEEEecCCCCceeeecCCC
Q 001163          493 DAVTGTKQYIFEGH----ESPVYSICPHHKENIQFIFS----TA-------------TDGKIKAWLYDNLGSRVDYDAPG  551 (1134)
Q Consensus       493 d~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~l~s----~s-------------~dg~i~vwd~~~~~~~~~~~~~~  551 (1134)
                      |..+++........    ...+..++++  ++|.++++    ++             ..+.|..++..  .....+....
T Consensus        96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d--~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~  171 (296)
T 3e5z_A           96 REPGGEWESIADSFEGKKLNSPNDVCLA--PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDR  171 (296)
T ss_dssp             CSTTCCEEEEECEETTEECCCCCCEEEC--TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCC
T ss_pred             cCCCCcEEEEeeccCCCCCCCCCCEEEC--CCCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCC
Confidence            98888765433221    1234567764  46677777    33             12345445443  3333444445


Q ss_pred             CCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC-CCee---EEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 001163          552 HSSTMMAYSADGARLFSCGTNKEGESYLVEWNES-EGAV---KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDM  627 (1134)
Q Consensus       552 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  627 (1134)
                      .....++|+|+++.+++...    ...|++||+. +++.   ...+ ......+..++++++|+.+++.  ++.|.+||.
T Consensus       172 ~~~~gi~~s~dg~~lv~~~~----~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~  244 (296)
T 3e5z_A          172 VKPNGLAFLPSGNLLVSDTG----DNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTP  244 (296)
T ss_dssp             SSEEEEEECTTSCEEEEETT----TTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECT
T ss_pred             CCCccEEECCCCCEEEEeCC----CCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECC
Confidence            56789999999999844432    3469999986 5554   3444 2233356779999999866666  789999998


Q ss_pred             CCCceeEEEecCCCCCCcceEEE-cCCCcEEEEEECCCcEEEEEccC
Q 001163          628 DNVNLLASIDADGGLQASPCIRF-NKEGILLAVSTNDNGIKILANAD  673 (1134)
Q Consensus       628 ~~~~~~~~~~~~~~~~~v~~v~~-sp~~~~l~~~~~dg~i~iw~~~~  673 (1134)
                      . ++.+..+..+  .. +.+++| +|+++.|++++.++ +.-++..+
T Consensus       245 ~-g~~~~~~~~~--~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~  286 (296)
T 3e5z_A          245 D-GDELGRVLTP--QT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNV  286 (296)
T ss_dssp             T-SCEEEEEECS--SC-CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred             C-CCEEEEEECC--CC-ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence            6 7777777654  33 789999 58999898888764 33334433

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.50  E-value=7.7e-12  Score=133.68  Aligned_cols=243  Identities=12%  Similarity=0.069  Sum_probs=176.7

Q ss_pred             EEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCC-CCEEEEEEcCCCCEEEEEeCCCEEEEEEccC
Q 001163          371 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT-ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHG  449 (1134)
Q Consensus       371 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spd~~~las~s~dg~v~iwd~~~  449 (1134)
                      ++++++.|+.|.+||.++|+.+.+                   +..+. ..+.+++++|+|++++  +.++.|..||. +
T Consensus         7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~   64 (276)
T 3no2_A            7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D   64 (276)
T ss_dssp             EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred             EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence            778999999999999999987653                   22233 4688999999999999  45778999999 7


Q ss_pred             CceeeeeeeeecC-CCCEEEEEEecCCCceEEEEEeC-CCeEEEEECCCCceeEEecC------CCcCEEEEeccccCCc
Q 001163          450 GDELRNHLEIEAH-VGSVNDLAFSYPNKQLSVVTCGE-DRVIKVWDAVTGTKQYIFEG------HESPVYSICPHHKENI  521 (1134)
Q Consensus       450 ~~~~~~~~~l~~h-~~~V~~v~~s~~~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~------h~~~v~~~~~~~~~~~  521 (1134)
                      |+.+..   +..+ ...+.++.+.++|+  ++++.+. ++.|..+|. +|+.+..+..      +......+++  .++|
T Consensus        65 G~~~W~---~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G  136 (276)
T 3no2_A           65 GRELWN---IAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINK--NKKG  136 (276)
T ss_dssp             SCEEEE---EECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEE--CTTS
T ss_pred             CCEEEE---EcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceE--CCCC
Confidence            876663   4433 34688999999999  7787776 778888884 8888876642      1122222333  5677


Q ss_pred             cEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCC---
Q 001163          522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK---  598 (1134)
Q Consensus       522 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~---  598 (1134)
                      +++++...++.|..||.+ ++....+... ....++.+.++|+.++++..    ...|..+|..+|+.+.++.....   
T Consensus       137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~  210 (276)
T 3no2_A          137 NYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGV  210 (276)
T ss_dssp             CEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSC
T ss_pred             CEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCc
Confidence            899999999999999987 7777777654 34556788899999888753    33699999999999998864321   


Q ss_pred             --CceEEEEEcCCCCEEEEEeCC--------CeEEEEEc-CCCceeEEEecCCCCCCcceEE
Q 001163          599 --RSVGVVQFDTTKNRFLAAGDE--------FMIKFWDM-DNVNLLASIDADGGLQASPCIR  649 (1134)
Q Consensus       599 --~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~  649 (1134)
                        ..+..+...++|+.+++....        +..+++.+ .+++.+-.+........+..++
T Consensus       211 ~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~  272 (276)
T 3no2_A          211 QLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC  272 (276)
T ss_dssp             CCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred             cccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence              136778888999888877421        23345555 4677777776655555555543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.49  E-value=1.2e-11  Score=135.55  Aligned_cols=248  Identities=9%  Similarity=0.038  Sum_probs=167.1

Q ss_pred             EEEecCCceeeeec----------cCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCC----CCCCee
Q 001163          782 LIYTNSGLAILALA----------SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTN----PEDAVP  847 (1134)
Q Consensus       782 l~~spdg~~l~~~~----------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~----h~~~v~  847 (1134)
                      ++++|||++++++.          .++.|.+||..                      +++.......+.+    ......
T Consensus        83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~----------------------t~~v~~~I~v~~g~r~~~g~~P~  140 (386)
T 3sjl_D           83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV----------------------TLLPTADIELPDAPRFLVGTYPW  140 (386)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT----------------------TCCEEEEEEETTCCCCCBSCCGG
T ss_pred             EEECCCCCEEEEEcccccccccCCCCCEEEEEECC----------------------CCeEEEEEECCCccccccCCCCc
Confidence            89999999988776          25678887544                      3333221110000    122456


Q ss_pred             EEEEcCCCCeEEEee---CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEccc-ceEEEec
Q 001163          848 CFALSKNDSYVMSAS---GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV-DEVKTKL  923 (1134)
Q Consensus       848 ~v~~s~dg~~la~~s---dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~-~~~~~~l  923 (1134)
                      .++|+|||+++.++.   ++.|.++|+.+++.+.++....  + ...+.. +.+.+++.+.||.+.+.++.+ ++.....
T Consensus       141 ~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~~~  216 (386)
T 3sjl_D          141 MTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEITH  216 (386)
T ss_dssp             GEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCEEEE
T ss_pred             eEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecC-CCceeEEECCCCCEEEEECCCCCeEEEee
Confidence            799999999888775   4789999999999999986322  2 223333 566777888899988888876 5543221


Q ss_pred             cCc----cCceE-EEEEe-eCCCEEEEEeCCCcEEEEECCCCccccceeeeec------CCCCCCCCCceEEEEcCCCCE
Q 001163          924 KGH----QKRIT-GLAFS-NTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIP------NGRTASALADTRVQFHLDQTH  991 (1134)
Q Consensus       924 ~~h----~~~V~-~l~~s-~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~l~fs~dg~~  991 (1134)
                      ..+    ..++. ...|. ++|++++ .+.+|.|.+.|+.++.......+.+.      .+-.+  .....++++++++.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p--~g~q~~a~~~~~~~  293 (386)
T 3sjl_D          217 TEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP--GGWQQVAYHRALDR  293 (386)
T ss_dssp             CCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE--CSSSCEEEETTTTE
T ss_pred             cceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccC--CCcceeeECCCCCe
Confidence            111    12222 24664 6776555 55589999999977542221112111      11111  23456888999999


Q ss_pred             EEEEe-----------eceEEEEeCCCcccceeeccCCCccCEEEEEEccCCC-EEEEEe-cCCcEEEeecCCCcceeec
Q 001163          992 LLAVH-----------ETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQ-SIYVAF-EEGSVGVLTASTLRLRCRI 1058 (1134)
Q Consensus       992 l~~~~-----------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~s~s-~Dg~i~vwd~~~~~~~~~~ 1058 (1134)
                      +++..           .++|.++|+.+++.+..+..   ...+.+++|++|++ +|+++. .++.|.++|..+++.+.++
T Consensus       294 lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v---g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i  370 (386)
T 3sjl_D          294 IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSV  370 (386)
T ss_dssp             EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             EEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC---CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEe
Confidence            99853           25799999999999999875   24788999999997 676654 4899999999999998887


Q ss_pred             CCC
Q 001163         1059 NPT 1061 (1134)
Q Consensus      1059 ~~~ 1061 (1134)
                      ...
T Consensus       371 ~~~  373 (386)
T 3sjl_D          371 NQL  373 (386)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            743

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.49  E-value=6.1e-12  Score=135.07  Aligned_cols=240  Identities=10%  Similarity=0.007  Sum_probs=165.5

Q ss_pred             CeeEEEEcCCCCeEE-Eee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEe
Q 001163          845 AVPCFALSKNDSYVM-SAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTK  922 (1134)
Q Consensus       845 ~v~~v~~s~dg~~la-~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~  922 (1134)
                      ...+++++++|++++ +.. ++.|.+||..+.............+.++++++ +++++++.. ++.|.+||..+......
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~  102 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVL  102 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeee
Confidence            678999999999777 434 68899999866543322223345688999999 777666655 88999999876543322


Q ss_pred             ccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-eeceEE
Q 001163          923 LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIA 1001 (1134)
Q Consensus       923 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~ 1001 (1134)
                      .......+.+++++++|+++++...++.|.+|+..+...    ......+ .   ..+..++++++|+++++. .++.|.
T Consensus       103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~----~~~~~~~-~---~~p~~i~~~~~g~l~v~~~~~~~i~  174 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ----TVLPFTG-L---NDPDGVAVDNSGNVYVTDTDNNRVV  174 (270)
T ss_dssp             CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC----EECCCCS-C---CSCCCEEECTTCCEEEEEGGGTEEE
T ss_pred             ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee----Eeecccc-C---CCceeEEEeCCCCEEEEECCCCEEE
Confidence            222335689999999999888888888999997654321    1111111 1   246789999999966664 467999


Q ss_pred             EEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecC
Q 001163         1002 IYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNP 1081 (1134)
Q Consensus      1002 iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p 1081 (1134)
                      +||...........  .+...+.+++++++|.++++...++.|.+|+..+..... ..      ..+...+  ..+++++
T Consensus       175 ~~~~~~~~~~~~~~--~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~------~~~~~~p--~~i~~~~  243 (270)
T 1rwi_B          175 KLEAESNNQVVLPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP------FTGLNTP--LAVAVDS  243 (270)
T ss_dssp             EECTTTCCEEECCC--SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC------CCSCSCE--EEEEECT
T ss_pred             EEecCCCceEeecc--cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec------cCCCCCc--eeEEECC
Confidence            99988765433222  233678999999999887877778999999987654322 11      1111233  4457778


Q ss_pred             CCCCEEEEEecCCcEEEEeCCCCCC
Q 001163         1082 TDPNQFALGLTDGGVYIIEPLEAEG 1106 (1134)
Q Consensus      1082 ~~~~~l~s~~~Dg~v~vW~~~~~~~ 1106 (1134)
                       +++++++...+++|+++++.+.+.
T Consensus       244 -~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          244 -DRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             -TCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             -CCCEEEEECCCCEEEEEcCCCccc
Confidence             578999999999999999987653

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.48  E-value=3.3e-12  Score=136.54  Aligned_cols=248  Identities=9%  Similarity=0.025  Sum_probs=178.6

Q ss_pred             CCCeEEEee-CCeEEEEEccCCeEEEEecCCC-CCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCcc-Cce
Q 001163          854 NDSYVMSAS-GGKISLFNMMTFKTMTTFMPPP-PAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQ-KRI  930 (1134)
Q Consensus       854 dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~-~~V  930 (1134)
                      .+++|++++ ++.|.+||.++++.+.++..+. ..+.+++++| +|++++  +.++.|+.||. +|+.+..+..+. ..+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~   79 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM   79 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence            457788887 8999999999999999998766 4789999999 888888  45778999998 899998888653 578


Q ss_pred             EEEEEeeCCCEEEEEeC-CCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-eeceEEEEeCCCc
Q 001163          931 TGLAFSNTLNVLVSSGA-DSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKL 1008 (1134)
Q Consensus       931 ~~l~~s~d~~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~iwd~~~~ 1008 (1134)
                      .++.+.++|+++++.+. ++.|..+|.+ ++....  .....+..........+++.++|+++++. .++.|..||.+ |
T Consensus        80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~--~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G  155 (276)
T 3no2_A           80 QTARILPDGNALVAWCGHPSTILEVNMK-GEVLSK--TEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G  155 (276)
T ss_dssp             EEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEE--EEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             cccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEE--EeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence            89999999999999887 7777777764 332211  11111111111235567889999999885 67999999998 9


Q ss_pred             ccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEE
Q 001163         1009 ECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFA 1088 (1134)
Q Consensus      1009 ~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~ 1088 (1134)
                      +.+..+...   ..+.++.+.++|.++++++.++.|..+|..+|+.+.++.... ++...  -..+..+...+ ++++++
T Consensus       156 ~~~w~~~~~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~-~~~~~--l~~~~~~~~~~-~G~i~v  228 (276)
T 3no2_A          156 QLLNSVKLS---GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAND-IEGVQ--LFFVAQLFPLQ-NGGLYI  228 (276)
T ss_dssp             CEEEEEECS---SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGG-SBSCC--CSEEEEEEECT-TSCEEE
T ss_pred             CEEEEEECC---CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCC-CCCcc--ccccccceEcC-CCCEEE
Confidence            988887632   345567888999999999888899999999999988876321 11111  12233345556 677777


Q ss_pred             EEecC--------CcEEEEeC-CCCCCCccCCCCCCC
Q 001163         1089 LGLTD--------GGVYIIEP-LEAEGRWGTSPPNEN 1116 (1134)
Q Consensus      1089 s~~~D--------g~v~vW~~-~~~~~~~~~~~~~~~ 1116 (1134)
                      +.+..        +..+++++ .+.+.-|......+-
T Consensus       229 ~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~  265 (276)
T 3no2_A          229 CNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKF  265 (276)
T ss_dssp             EEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTS
T ss_pred             EeccCccccccccCCceEEEECCCCCEEEEecCcccc
Confidence            76421        23456666 466667887655553

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.48  E-value=1.2e-10  Score=130.22  Aligned_cols=278  Identities=9%  Similarity=-0.040  Sum_probs=181.9

Q ss_pred             EcCCCCeEEEEEe-CCC---cEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEe--
Q 001163          364 FHPVQQILLVVGT-NMG---DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY--  437 (1134)
Q Consensus       364 fsp~g~~lla~gs-~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s--  437 (1134)
                      ..|++++++++-. ...   +|.+||..+++.+..                   +..-..+  .++|||||++|+++.  
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spDg~~lyv~n~~   86 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFLP--NPVAAHSGSEFALASTS   86 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-------------------ecCCCCC--CeEECCCCCEEEEEecc
Confidence            4467775554432 222   899999999886543                   1111223  899999999999886  


Q ss_pred             --------CCCEEEEEEccCCceeeeeeeee--cC---CCCEEEEEEecCCCceEEEEEeC--CCeEEEEECCCCceeEE
Q 001163          438 --------SKHIVHLYTYHGGDELRNHLEIE--AH---VGSVNDLAFSYPNKQLSVVTCGE--DRVIKVWDAVTGTKQYI  502 (1134)
Q Consensus       438 --------~dg~v~iwd~~~~~~~~~~~~l~--~h---~~~V~~v~~s~~~~~~~l~s~s~--d~~i~iwd~~~~~~~~~  502 (1134)
                              .++.|.+||..+.+.+.... +.  .+   ...-..++|+|||+  +|+.+..  ++.|.++| .+++.+.+
T Consensus        87 ~~~~~rg~~~~~v~viD~~t~~~~~~i~-~~~~~~~~~g~~p~~~~~spDG~--~l~v~n~~~~~~v~viD-~t~~~~~~  162 (373)
T 2mad_H           87 FSRIAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNA--DLLFFQFAAGPAVGLVV-QGGSSDDQ  162 (373)
T ss_pred             ccccccCCCCCeEEEEECCCCcEEEEEE-CCCccccccCCCccceEECCCCC--EEEEEecCCCCeEEEEE-CCCCEEeE
Confidence                    36789999999877655332 21  00   12345899999999  5555553  57899999 99998887


Q ss_pred             -ecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec-----CCCCC-eeEEEECcCCCEEEEEecCCCC
Q 001163          503 -FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-----APGHS-STMMAYSADGARLFSCGTNKEG  575 (1134)
Q Consensus       503 -~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-----~~~~~-v~~~~~s~~~~~l~~~~~~~~~  575 (1134)
                       +... ..   +.+.+... ..+++.+.||.+.++|. +++......     ....+ .....+.+++..++..+.    
T Consensus       163 ~i~~~-~~---~~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----  232 (373)
T 2mad_H          163 LLSSP-TC---YHIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY----  232 (373)
T ss_pred             EcCCC-ce---EEEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC----
Confidence             6432 22   22333333 45677788999999998 555442211     11111 123456666665544433    


Q ss_pred             CeEEEEEeCCCCe--eEEEecCC---------CCCceEEEEEcCCCCEEEEEeC----------CCeEEEEEcCCCceeE
Q 001163          576 ESYLVEWNESEGA--VKRTYHGL---------GKRSVGVVQFDTTKNRFLAAGD----------EFMIKFWDMDNVNLLA  634 (1134)
Q Consensus       576 ~~~i~~wd~~~~~--~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~  634 (1134)
                      ...+.+.|+..+.  .+..+...         .......+.++++++.++++..          ++.|.++|..+++.+.
T Consensus       233 ~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~  312 (373)
T 2mad_H          233 SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS  312 (373)
T ss_pred             CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEE
Confidence            2258888886552  22332211         1112344789999998888653          3579999999999999


Q ss_pred             EEecCCCCCCcceEEEcCCCc-EEEEEE-CCCcEEEEEccCCceeEEE
Q 001163          635 SIDADGGLQASPCIRFNKEGI-LLAVST-NDNGIKILANADGIRLLRT  680 (1134)
Q Consensus       635 ~~~~~~~~~~v~~v~~sp~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~  680 (1134)
                      .+...+   ....++|+|||+ +++++. .++.|.+||..++ +....
T Consensus       313 ~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~-~vv~~  356 (373)
T 2mad_H          313 QISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG-DQDQS  356 (373)
T ss_pred             EEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC-CEEee
Confidence            986532   468999999999 777776 5899999999988 44444

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.47  E-value=4.4e-12  Score=157.28  Aligned_cols=247  Identities=11%  Similarity=0.061  Sum_probs=162.9

Q ss_pred             ccCCCCEEEEEEcCCCCEEEEEeCC-----CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCe-
Q 001163          415 SDYTASVNRVMWSPDGTLFGVAYSK-----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV-  488 (1134)
Q Consensus       415 ~~h~~~V~~l~~spd~~~las~s~d-----g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~-  488 (1134)
                      .+|...+..++|||||++||.++.+     ..|++||+.+++.+..    ..+...+..++|+|| +  .|+.++.|+. 
T Consensus       159 ~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~----~~~~~~~~~~~wspD-~--~l~~~~~~~~~  231 (741)
T 1yr2_A          159 KDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD----ELKWVKFSGLAWLGN-D--ALLYSRFAEPK  231 (741)
T ss_dssp             ----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE----EEEEEESCCCEESTT-S--EEEEEECCCC-
T ss_pred             cCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc----cCCCceeccEEEECC-C--EEEEEEecCcc
Confidence            3455678999999999999987654     4699999999986542    112222467899999 7  5666665543 


Q ss_pred             -------------EEEEECCCCc----eeEEecCCCcCEEEEeccccCCccEEEEecCCC-----cEEEEecCCC--Cce
Q 001163          489 -------------IKVWDAVTGT----KQYIFEGHESPVYSICPHHKENIQFIFSTATDG-----KIKAWLYDNL--GSR  544 (1134)
Q Consensus       489 -------------i~iwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg-----~i~vwd~~~~--~~~  544 (1134)
                                   |++|++.++.    .+.....+...+..+.|+  +||++|+..+.++     .|++||+.++  ...
T Consensus       232 ~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~S--pDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~  309 (741)
T 1yr2_A          232 EGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVS--SDGRWVVITSSEGTDPVNTVHVARVTNGKIGPV  309 (741)
T ss_dssp             -------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC--TTSCEEEEEEECTTCSCCEEEEEEEETTEECCC
T ss_pred             cccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEEC--CCCCEEEEEEEccCCCcceEEEEECCCCCCccc
Confidence                         8999998775    233333344457777774  5667777766543     7999999875  313


Q ss_pred             eeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC--eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeE
Q 001163          545 VDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG--AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMI  622 (1134)
Q Consensus       545 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  622 (1134)
                      ..+..+...+... ++|+|+.|+..+..+.....|.+||+.++  .....+..+ ...+..+.+. ++..+++...|+..
T Consensus       310 ~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~~~l~~~~~~-~~~lv~~~~~dg~~  386 (741)
T 1yr2_A          310 TALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPES-KDNLESVGIA-GNRLFASYIHDAKS  386 (741)
T ss_dssp             EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCC-SSEEEEEEEE-BTEEEEEEEETTEE
T ss_pred             EEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCC-CCeEEEEEEE-CCEEEEEEEECCEE
Confidence            3333333334444 35999999888765444677999999875  344444433 3356677777 55667777788887


Q ss_pred             EEEEcC-CCceeEEEecCCCCCCcceEEEcCCCcEEEEE-E---CCCcEEEEEccCC
Q 001163          623 KFWDMD-NVNLLASIDADGGLQASPCIRFNKEGILLAVS-T---NDNGIKILANADG  674 (1134)
Q Consensus       623 ~iwd~~-~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~---~dg~i~iw~~~~~  674 (1134)
                      ++|.+. +++....+..+ ....+..+.++|++..++.. +   ..++|++||+.++
T Consensus       387 ~l~~~~~~g~~~~~l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg  442 (741)
T 1yr2_A          387 QVLAFDLDGKPAGAVSLP-GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA  442 (741)
T ss_dssp             EEEEEETTSCEEEECBCS-SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred             EEEEEeCCCCceeeccCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence            777554 45556666532 13467788999988765533 2   3478999999877

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.46  E-value=9.6e-12  Score=133.51  Aligned_cols=241  Identities=9%  Similarity=-0.002  Sum_probs=165.2

Q ss_pred             CeeEEEEcCCCCeEEE-EEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEE
Q 001163          358 AVKSMDFHPVQQILLV-VGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA  436 (1134)
Q Consensus       358 ~V~~v~fsp~g~~lla-~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~  436 (1134)
                      ...+++++++|+ +++ +.+.++.|.+||..++.....                   ...+...+.+++++++|+++++.
T Consensus        25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~~i~~~~~g~l~v~~   84 (270)
T 1rwi_B           25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTD   84 (270)
T ss_dssp             CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EEC-------------------CCCSCCSCCCEEECTTCCEEEEE
T ss_pred             CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceE-------------------eeCCcCCcceeEECCCCCEEEEc
Confidence            677999999998 656 557788999999766543210                   12233567889999999977666


Q ss_pred             eCCCEEEEEEccCCceeeeeeeee-cCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEec
Q 001163          437 YSKHIVHLYTYHGGDELRNHLEIE-AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICP  515 (1134)
Q Consensus       437 s~dg~v~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~  515 (1134)
                      . ++.|.+||..++....    +. .....+..++++++|+  ++++...++.|.+||..+.............+.++++
T Consensus        85 ~-~~~i~~~d~~~~~~~~----~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~  157 (270)
T 1rwi_B           85 F-NNRVVTLAAGSNNQTV----LPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV  157 (270)
T ss_dssp             T-TTEEEEECTTCSCCEE----CCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred             C-CCEEEEEeCCCceEee----eecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence            6 8899999987654321    22 2335689999999998  6777777889999986555443322233345667777


Q ss_pred             cccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecC
Q 001163          516 HHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG  595 (1134)
Q Consensus       516 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~  595 (1134)
                      ++  +|.++++...++.|.+||................+..++++++|...++...    ...|.+||........ ...
T Consensus       158 ~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~----~~~v~~~~~~~~~~~~-~~~  230 (270)
T 1rwi_B          158 DN--SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTTSTV-LPF  230 (270)
T ss_dssp             CT--TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TSCEEEECTTCSCCEE-CCC
T ss_pred             eC--CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECC----CCcEEEEcCCCCccee-ecc
Confidence            54  5577777777889999998765433322222356889999999976665532    3349999987654433 222


Q ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce
Q 001163          596 LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL  632 (1134)
Q Consensus       596 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  632 (1134)
                      .....+..++++++++.+++...++.|+++++...+.
T Consensus       231 ~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          231 TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence            2223678999999999888888899999999876543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.46  E-value=2.3e-11  Score=133.26  Aligned_cols=283  Identities=11%  Similarity=0.037  Sum_probs=185.5

Q ss_pred             CCCCceeEEEeecCCCeeEEEEcCCCCeEEEEEe---------CCCcEEEEecCCccceeeeceeeeeccccCccccccc
Q 001163          343 DDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGT---------NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASL  413 (1134)
Q Consensus       343 d~~~~~~~~~~~h~~~V~~v~fsp~g~~lla~gs---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (1134)
                      |....+.+..+.-..... +++||||++++++.+         .++.|.+||..+++.+....+.     .. ..     
T Consensus        65 D~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~-----~g-~r-----  132 (386)
T 3sjl_D           65 DGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELP-----DA-PR-----  132 (386)
T ss_dssp             ETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEET-----TC-CC-----
T ss_pred             ECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECC-----Cc-cc-----
Confidence            334466777777444444 999999998766643         4678999999998876541110     00 00     


Q ss_pred             cccCCCCEEEEEEcCCCCEEEEEeC--CCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEE
Q 001163          414 SSDYTASVNRVMWSPDGTLFGVAYS--KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV  491 (1134)
Q Consensus       414 ~~~h~~~V~~l~~spd~~~las~s~--dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i  491 (1134)
                       .........++|+|||++|.++..  ++.|.++|+.+++.+... .+.+      |....|.+.+ .+++.+.||.+.+
T Consensus       133 -~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI-~v~g------~~~~~P~g~~-~~~~~~~DG~~~~  203 (386)
T 3sjl_D          133 -FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRML-DVPD------CYHIFPTAPD-TFFMHCRDGSLAK  203 (386)
T ss_dssp             -CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE-ECCS------EEEEEEEETT-EEEEEETTSCEEE
T ss_pred             -cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEE-ECCC------cceeecCCCc-eeEEECCCCCEEE
Confidence             001124557999999999998864  689999999999876643 2222      1223354443 5678888999999


Q ss_pred             EECCC-CceeEEecCCC----cCEE-EEeccccCCccEEEEecCCCcEEEEecCCCCceee--ec----------CCCCC
Q 001163          492 WDAVT-GTKQYIFEGHE----SPVY-SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD--YD----------APGHS  553 (1134)
Q Consensus       492 wd~~~-~~~~~~~~~h~----~~v~-~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~--~~----------~~~~~  553 (1134)
                      .++.+ ++.......+.    .++. ...|. ..+|.+++ .+.+|.|.+.|+........  +.          .....
T Consensus       204 v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~-~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g  281 (386)
T 3sjl_D          204 VAFGTEGTPEITHTEVFHPEDEFLINHPAYS-QKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGG  281 (386)
T ss_dssp             EECCSSSCCEEEECCCCSCTTSCBCSCCEEE-TTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECS
T ss_pred             EECCCCCeEEEeecceeccccccccccceeE-cCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCC
Confidence            99876 66533221111    1111 01222 24555544 55589999999875543221  11          01123


Q ss_pred             eeEEEECcCCCEEEEEecC------CCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCC-EEEEEe-CCCeEEEE
Q 001163          554 STMMAYSADGARLFSCGTN------KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN-RFLAAG-DEFMIKFW  625 (1134)
Q Consensus       554 v~~~~~s~~~~~l~~~~~~------~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~iw  625 (1134)
                      ...+++++++++++.....      ++....|.+.|+.+++.+..+....  .+..+.+++|++ +|+++. .++.|.++
T Consensus       282 ~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~~~~VsVi  359 (386)
T 3sjl_D          282 WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALSTGDKTLYIH  359 (386)
T ss_dssp             SSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEEEEETTTTEEEEE
T ss_pred             cceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEEEEcCCCCeEEEE
Confidence            4457889999998886431      1223579999999999999887643  677899999996 777755 68999999


Q ss_pred             EcCCCceeEEEecCCCCCCcceEEEcCC
Q 001163          626 DMDNVNLLASIDADGGLQASPCIRFNKE  653 (1134)
Q Consensus       626 d~~~~~~~~~~~~~~~~~~v~~v~~sp~  653 (1134)
                      |..+++.+.++...++   -+.+.+++|
T Consensus       360 D~~t~k~~~~i~~~~~---p~~l~~s~d  384 (386)
T 3sjl_D          360 DAESGEELRSVNQLGH---GPQVITTAD  384 (386)
T ss_dssp             ETTTCCEEEEECCCCS---SCCEEEECC
T ss_pred             ECCCCcEEEEecCCCC---CceeEECCc
Confidence            9999999999976544   356677665

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.45  E-value=4.2e-10  Score=122.73  Aligned_cols=279  Identities=10%  Similarity=-0.017  Sum_probs=189.9

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la  434 (1134)
                      ....+.+++++++|+ +.++...++.|.+||.. ++...   +.               +..+...+.+++++++|++.+
T Consensus        18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~---~~---------------~~~~~~~~~~i~~~~~g~l~v   77 (300)
T 2qc5_A           18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKE---FE---------------VPTPDAKVMCLIVSSLGDIWF   77 (300)
T ss_dssp             TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEE---EE---------------CSSTTCCEEEEEECTTSCEEE
T ss_pred             CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEE---EE---------------CCCCCCcceeEEECCCCCEEE
Confidence            346788999999998 55666678899999987 54322   10               122346799999999999888


Q ss_pred             EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeE-EecCCCcCEEEE
Q 001163          435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY-IFEGHESPVYSI  513 (1134)
Q Consensus       435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~~h~~~v~~~  513 (1134)
                      +...++.|..||.. ++.. . ..+......+.++++.++|.  ++++...++.|..+|.. ++... .+......+.++
T Consensus        78 ~~~~~~~v~~~d~~-g~~~-~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i  151 (300)
T 2qc5_A           78 TENGANKIGKLSKK-GGFT-E-YPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFI  151 (300)
T ss_dssp             EETTTTEEEEECTT-SCEE-E-EECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEE
T ss_pred             EecCCCeEEEECCC-CCeE-E-ecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeE
Confidence            87778899999988 5432 1 12333446789999999988  67777668899999977 66543 233345567888


Q ss_pred             eccccCCccEEEEecCCCcEEEEecCCCCceee-ecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEE
Q 001163          514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD-YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRT  592 (1134)
Q Consensus       514 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~  592 (1134)
                      ++.  +++.++++...++.|..||. ....... .......+..++++++|+..++...    ...|..||. +++....
T Consensus       152 ~~d--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~----~~~i~~~~~-~g~~~~~  223 (300)
T 2qc5_A          152 TLG--SDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM----GNKIGRITT-TGEISEY  223 (300)
T ss_dssp             EEC--TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEEE
T ss_pred             EEC--CCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC----CCEEEEEcC-CCcEEEE
Confidence            875  45577777766788999987 3332221 2223346889999999976665432    335899998 5554443


Q ss_pred             ecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEc
Q 001163          593 YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN  671 (1134)
Q Consensus       593 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~  671 (1134)
                      ........+..++++++++.+++...++.|..||. +++.. .+........+.+++++++|.+.++.. . .|..++.
T Consensus       224 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          224 DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred             ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence            22222236788999999986666656789999998 45433 333222345678999999998666544 4 6666654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.44  E-value=3.8e-11  Score=134.35  Aligned_cols=205  Identities=11%  Similarity=0.072  Sum_probs=142.4

Q ss_pred             eEEEEcCCCCeEEEee---CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEe-
Q 001163          847 PCFALSKNDSYVMSAS---GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTK-  922 (1134)
Q Consensus       847 ~~v~~s~dg~~la~~s---dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~-  922 (1134)
                      ..++|+|||++++++.   ++.|.+.|+.+++.+.++....  .  ....|++.+.+++.+.||.+.+.+..+++.... 
T Consensus       180 ~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~  255 (426)
T 3c75_H          180 WMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTN  255 (426)
T ss_dssp             GGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE
T ss_pred             ceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe
Confidence            4578889998888875   3689999999999998876422  1  333442445666777788888888766654422 


Q ss_pred             ---ccCccCce-EEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCC-C---CCCCceEEEEcCCCCEEEE
Q 001163          923 ---LKGHQKRI-TGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRT-A---SALADTRVQFHLDQTHLLA  994 (1134)
Q Consensus       923 ---l~~h~~~V-~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-~---~~~~v~~l~fs~dg~~l~~  994 (1134)
                         +.....++ ..+.|++++..++..+..+.|.+.|+.+..........+..... .   .......++|++|++.+++
T Consensus       256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyV  335 (426)
T 3c75_H          256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYL  335 (426)
T ss_dssp             CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEE
T ss_pred             eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEE
Confidence               22222222 23578999988888788899999998764422111111110000 0   0012334789999998888


Q ss_pred             Ee-----------eceEEEEeCCCcccceeeccCCCccCEEEEEEccCCC-EEEEEe-cCCcEEEeecCCCcceeec
Q 001163          995 VH-----------ETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQ-SIYVAF-EEGSVGVLTASTLRLRCRI 1058 (1134)
Q Consensus       995 ~~-----------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~s~s-~Dg~i~vwd~~~~~~~~~~ 1058 (1134)
                      +.           +++|.++|..+++.+..+...   ....+++|+|||+ +++++. .++.|.|+|+.+++.+.++
T Consensus       336 a~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg---~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          336 LVDQRDEWKHKAASRFVVVLNAETGERINKIELG---HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             EecccccccccCCCCEEEEEECCCCeEEEEEECC---CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            53           357999999999999998742   3588999999999 888888 5899999999999998886

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.40  E-value=1e-09  Score=119.68  Aligned_cols=277  Identities=12%  Similarity=0.059  Sum_probs=185.9

Q ss_pred             CCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 001163          551 GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV  630 (1134)
Q Consensus       551 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  630 (1134)
                      .....++++.++|+..++...    ...|..||.. ++............+..+++.++++.+++...++.|..||.. +
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~----~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g   92 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHK----ANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G   92 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETT----TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             CCCcceeeECCCCCEEEEcCC----CCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence            446789999999987776532    3459999988 655432222222368889999999877777678899999988 5


Q ss_pred             ceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhccccccccccccc
Q 001163          631 NLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANA  710 (1134)
Q Consensus       631 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  710 (1134)
                      +.. .+........+..+++.++|.++++...++.|..|+.. +. .. .+.                            
T Consensus        93 ~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~-~~~----------------------------  140 (300)
T 2qc5_A           93 GFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT-IY-EYD----------------------------  140 (300)
T ss_dssp             CEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC-EE-EEE----------------------------
T ss_pred             CeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC-EE-Ecc----------------------------
Confidence            543 33332223567899999999888777667888888765 31 11 110                            


Q ss_pred             ccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCce
Q 001163          711 NVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLA  790 (1134)
Q Consensus       711 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~  790 (1134)
                                                                   +              +  .....+.++++.++|+.
T Consensus       141 ---------------------------------------------~--------------~--~~~~~~~~i~~d~~g~l  159 (300)
T 2qc5_A          141 ---------------------------------------------L--------------P--NKGSYPAFITLGSDNAL  159 (300)
T ss_dssp             ---------------------------------------------C--------------S--STTCCEEEEEECTTSSE
T ss_pred             ---------------------------------------------C--------------C--CCCCCceeEEECCCCCE
Confidence                                                         0              0  01234678899999996


Q ss_pred             eeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEE
Q 001163          791 ILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLF  869 (1134)
Q Consensus       791 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lw  869 (1134)
                      .++...++.+..|+..                       +.........  +...+..++++++|.+.++.. .+.|.+|
T Consensus       160 ~v~~~~~~~i~~~~~~-----------------------g~~~~~~~~~--~~~~~~~i~~d~~g~l~v~~~~~~~i~~~  214 (300)
T 2qc5_A          160 WFTENQNNSIGRITNT-----------------------GKLEEYPLPT--NAAAPVGITSGNDGALWFVEIMGNKIGRI  214 (300)
T ss_dssp             EEEETTTTEEEEECTT-----------------------CCEEEEECSS--TTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred             EEEecCCCeEEEECCC-----------------------CcEEEeeCCC--CCCCcceEEECCCCCEEEEccCCCEEEEE
Confidence            6666667778777542                       1111111111  345678999999998777665 5789999


Q ss_pred             EccCCeEEEE-ecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEE-EeccCccCceEEEEEeeCCCEEEEEeC
Q 001163          870 NMMTFKTMTT-FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVK-TKLKGHQKRITGLAFSNTLNVLVSSGA  947 (1134)
Q Consensus       870 d~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~-~~l~~h~~~V~~l~~s~d~~~l~s~s~  947 (1134)
                      |. +++.... +......+.++++++ +++++++...++.|..|+. +++.. ..+......+.++++.++|+++++.. 
T Consensus       215 ~~-~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-  290 (300)
T 2qc5_A          215 TT-TGEISEYDIPTPNARPHAITAGK-NSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-  290 (300)
T ss_dssp             CT-TCCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-
T ss_pred             cC-CCcEEEEECCCCCCCceEEEECC-CCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-
Confidence            98 5554433 333456789999999 7877777666789999998 45433 22343456688999999998777655 


Q ss_pred             CCcEEEEEC
Q 001163          948 DSQLCVWST  956 (1134)
Q Consensus       948 Dg~i~iwd~  956 (1134)
                      . .|..+|.
T Consensus       291 ~-~i~~~~p  298 (300)
T 2qc5_A          291 C-KIGKLNL  298 (300)
T ss_dssp             S-EEEEEEE
T ss_pred             C-ceEEeCC
Confidence            4 6776664

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.39  E-value=3.2e-11  Score=149.51  Aligned_cols=245  Identities=9%  Similarity=-0.028  Sum_probs=158.5

Q ss_pred             CCeeEEEEcCCCCeEEEEEeCCC----cEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCE
Q 001163          357 SAVKSMDFHPVQQILLVVGTNMG----DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL  432 (1134)
Q Consensus       357 ~~V~~v~fsp~g~~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~  432 (1134)
                      ..+..++|||||++|+.+.+.+|    .|++||+.+|+.+..                    ..+...+..++|||| +.
T Consensus       163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~--------------------~~~~~~~~~~~wspD-~~  221 (741)
T 1yr2_A          163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD--------------------ELKWVKFSGLAWLGN-DA  221 (741)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE--------------------EEEEEESCCCEESTT-SE
T ss_pred             EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc--------------------cCCCceeccEEEECC-CE
Confidence            36889999999997766555444    599999999986542                    011122357899999 99


Q ss_pred             EEEEeCCCE--------------EEEEEccCCceee-eeeeeecCCCCEEEEEEecCCCceEEEEEeC-----CCeEEEE
Q 001163          433 FGVAYSKHI--------------VHLYTYHGGDELR-NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-----DRVIKVW  492 (1134)
Q Consensus       433 las~s~dg~--------------v~iwd~~~~~~~~-~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~-----d~~i~iw  492 (1134)
                      |+.++.++.              |++|++.++.... .......|...+..+.|+|||+  +|+..+.     ...|.+|
T Consensus       222 l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~--~l~~~~~~~~~~~~~l~~~  299 (741)
T 1yr2_A          222 LLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGR--WVVITSSEGTDPVNTVHVA  299 (741)
T ss_dssp             EEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC--EEEEEEECTTCSCCEEEEE
T ss_pred             EEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCC--EEEEEEEccCCCcceEEEE
Confidence            998887654              8999998775311 1111223444689999999999  4555443     3489999


Q ss_pred             ECCCC--ceeEEecCCCcCEEEEeccccCCccEEEEecC----CCcEEEEecCCCC-c-eeeecCCCCCeeEEEECcCCC
Q 001163          493 DAVTG--TKQYIFEGHESPVYSICPHHKENIQFIFSTAT----DGKIKAWLYDNLG-S-RVDYDAPGHSSTMMAYSADGA  564 (1134)
Q Consensus       493 d~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~----dg~i~vwd~~~~~-~-~~~~~~~~~~v~~~~~s~~~~  564 (1134)
                      |+.++  ++...+..+...+.... .  ++|..|+..+.    ++.|.+||+.... . ...+..+...+..+.++ ++.
T Consensus       300 d~~~~~~~~~~~l~~~~~~~~~~~-~--~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~  375 (741)
T 1yr2_A          300 RVTNGKIGPVTALIPDLKAQWDFV-D--GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNR  375 (741)
T ss_dssp             EEETTEECCCEEEECSSSSCEEEE-E--EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTE
T ss_pred             ECCCCCCcccEEecCCCCceEEEE-e--ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCE
Confidence            99887  41455555555554443 2  34466666554    3459999987642 2 22333333345667776 444


Q ss_pred             EEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe----CCCeEEEEEcCCCc
Q 001163          565 RLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG----DEFMIKFWDMDNVN  631 (1134)
Q Consensus       565 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~  631 (1134)
                      .+++...  ++...|+++++. +.....+.......+..+.++|+++.++...    ..++|++||+.+++
T Consensus       376 lv~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          376 LFASYIH--DAKSQVLAFDLD-GKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEEEEE--TTEEEEEEEETT-SCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EEEEEEE--CCEEEEEEEeCC-CCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            5555544  335567777764 5556666654344688899999987665332    45789999998887

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.36  E-value=1.2e-10  Score=130.21  Aligned_cols=279  Identities=11%  Similarity=0.108  Sum_probs=187.4

Q ss_pred             CCCCeEEEEEeCC----CcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEe----
Q 001163          366 PVQQILLVVGTNM----GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY----  437 (1134)
Q Consensus       366 p~g~~lla~gs~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s----  437 (1134)
                      |++++++++...+    +.|.++|..+++.+....                  .+ ..+  .+++||||++|.++.    
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~------------------vG-~~P--gia~SpDgk~lyVan~~~~  140 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTD------------------GG-FLP--HPVAAEDGSFFAQASTVFE  140 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEE------------------EC-SSC--EEEECTTSSCEEEEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEE------------------CC-CCC--ceEECCCCCEEEEEecccc
Confidence            4666666665544    799999999998876421                  12 224  799999999888876    


Q ss_pred             ------CCCEEEEEEccCCceeeeeeeee--c---CCCCEEEEEEecCCCceEEEEEe--CCCeEEEEECCCCceeEEec
Q 001163          438 ------SKHIVHLYTYHGGDELRNHLEIE--A---HVGSVNDLAFSYPNKQLSVVTCG--EDRVIKVWDAVTGTKQYIFE  504 (1134)
Q Consensus       438 ------~dg~v~iwd~~~~~~~~~~~~l~--~---h~~~V~~v~~s~~~~~~~l~s~s--~d~~i~iwd~~~~~~~~~~~  504 (1134)
                            .++.|.++|..+++.+.... +.  .   .......++|+|||+  +++.+.  .++.|.+.|+.+++.+.++.
T Consensus       141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk--~lyV~n~~~~~~VsVID~~t~kvv~~I~  217 (426)
T 3c75_H          141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNK--NLLFYQFSPAPAVGVVDLEGKTFDRMLD  217 (426)
T ss_dssp             ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSS--EEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred             ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCC--EEEEEecCCCCeEEEEECCCCeEEEEEE
Confidence                  46789999999988766432 22  0   112345789999999  455554  36899999999999998876


Q ss_pred             CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCcee----eecCCCCC-eeEEEECcCCCEEEEEecCCCCCeEE
Q 001163          505 GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV----DYDAPGHS-STMMAYSADGARLFSCGTNKEGESYL  579 (1134)
Q Consensus       505 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~----~~~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i  579 (1134)
                      --..    ....+.+. ..+++.+.||.+.+.+....+...    .+.....+ ...+.+++++..++.....    +.+
T Consensus       218 v~g~----~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~----g~V  288 (426)
T 3c75_H          218 VPDC----YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYT----GKI  288 (426)
T ss_dssp             CCSE----EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTT----SEE
T ss_pred             cCCc----eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCC----CcE
Confidence            4221    12223332 456667778888888874433321    11111112 2245679998887776542    358


Q ss_pred             EEEeCCCCeeE--EEecCC---------CCCceEEEEEcCCCCEEEEEeC----------CCeEEEEEcCCCceeEEEec
Q 001163          580 VEWNESEGAVK--RTYHGL---------GKRSVGVVQFDTTKNRFLAAGD----------EFMIKFWDMDNVNLLASIDA  638 (1134)
Q Consensus       580 ~~wd~~~~~~~--~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~  638 (1134)
                      .+.|.......  ..+...         .......++++++++++++...          ++.|.+.|..+.+.+..+..
T Consensus       289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v  368 (426)
T 3c75_H          289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL  368 (426)
T ss_dssp             EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred             EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence            89998655422  111110         0001223689999988877642          35799999999999999875


Q ss_pred             CCCCCCcceEEEcCCCc-EEEEEE-CCCcEEEEEccCCceeEEEe
Q 001163          639 DGGLQASPCIRFNKEGI-LLAVST-NDNGIKILANADGIRLLRTV  681 (1134)
Q Consensus       639 ~~~~~~v~~v~~sp~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~~  681 (1134)
                      ..   ....++|+|||+ ++++.. .++.|.++|..++ +.++.+
T Consensus       369 g~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~-kvv~tI  409 (426)
T 3c75_H          369 GH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATG-EELRSV  409 (426)
T ss_dssp             EE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEEE
T ss_pred             CC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC-CEEEEe
Confidence            32   467999999998 888888 5899999999998 555554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.34  E-value=1.6e-10  Score=127.19  Aligned_cols=245  Identities=9%  Similarity=0.017  Sum_probs=163.5

Q ss_pred             ccEEEEEEecCCceeee-------eccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCC-CCCCCCCeeE
Q 001163          777 MRVSRLIYTNSGLAILA-------LASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDIS-DTNPEDAVPC  848 (1134)
Q Consensus       777 ~~i~~l~~spdg~~l~~-------~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~h~~~v~~  848 (1134)
                      ....+++|+++|..+++       ...++.+.+|+...                      ++....... ..++...+..
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~----------------------g~~~~~~~~~~~~~~~~~~~   75 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKT----------------------GKKTVICKPEVNGYGGIPAG   75 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTT----------------------CCEEEEECCEETTEECCEEE
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCC----------------------CcEEEEEecccCCCCCCCce
Confidence            34678999999987777       56778888886432                      222111010 0013456889


Q ss_pred             EEEcCC-CCeEEEeeCCeEEEEEccCCeEEEE-ecC----CCCCeEEEEEcCCCCcEEEEEeCC---------------C
Q 001163          849 FALSKN-DSYVMSASGGKISLFNMMTFKTMTT-FMP----PPPAATFLAFHPQDNNIIAIGMED---------------S  907 (1134)
Q Consensus       849 v~~s~d-g~~la~~sdg~i~lwd~~~~~~~~~-~~~----~~~~v~~l~~sp~~~~~la~g~~d---------------g  907 (1134)
                      ++++++ |+++++..++.|.+||.. ++.... ...    ....+.++++++ +++++++...+               +
T Consensus        76 i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~  153 (314)
T 1pjx_A           76 CQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFG  153 (314)
T ss_dssp             EEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred             EEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCC
Confidence            999999 776666656689999998 665433 221    123488999999 78887776655               5


Q ss_pred             cEEEEEcccceEEEeccCccCceEEEEEe----eCCCEEE-EEeCCCcEEEEECC-CCccccceeeeecCCCCCCCCCce
Q 001163          908 SIQIYNVRVDEVKTKLKGHQKRITGLAFS----NTLNVLV-SSGADSQLCVWSTD-GWEKQASKFLTIPNGRTASALADT  981 (1134)
Q Consensus       908 ~i~iwd~~~~~~~~~l~~h~~~V~~l~~s----~d~~~l~-s~s~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~  981 (1134)
                      .|..|+.. ++... +..+......++|+    ++++.|+ +...++.|.+|++. .++...........++..  ..+.
T Consensus       154 ~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~--~~p~  229 (314)
T 1pjx_A          154 SIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE--GGAD  229 (314)
T ss_dssp             EEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS--CEEE
T ss_pred             eEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC--CCCC
Confidence            67777765 55433 22344456889999    9997654 44567899999986 333221112222222210  2367


Q ss_pred             EEEEcCCCCEEEEE-eeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEE-EEecCCcEEEeecCC
Q 001163          982 RVQFHLDQTHLLAV-HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIY-VAFEEGSVGVLTAST 1051 (1134)
Q Consensus       982 ~l~fs~dg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~-s~s~Dg~i~vwd~~~ 1051 (1134)
                      .++++++|++.++. .++.|.+||..+++.+..+.  .+...+.+++|++||++|+ +...++.|..|++..
T Consensus       230 ~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR--CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE--CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             ceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe--CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            89999999887774 57899999998787776665  3457899999999999655 445568899999865

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.32  E-value=3.7e-10  Score=124.12  Aligned_cols=243  Identities=12%  Similarity=0.081  Sum_probs=162.5

Q ss_pred             CCCEEEEEEcCCCCEEEE-------EeCCCEEEEEEccCCceeeeee-eeecCCCCEEEEEEecC-CCceEEEEEeCCCe
Q 001163          418 TASVNRVMWSPDGTLFGV-------AYSKHIVHLYTYHGGDELRNHL-EIEAHVGSVNDLAFSYP-NKQLSVVTCGEDRV  488 (1134)
Q Consensus       418 ~~~V~~l~~spd~~~las-------~s~dg~v~iwd~~~~~~~~~~~-~l~~h~~~V~~v~~s~~-~~~~~l~s~s~d~~  488 (1134)
                      -....+++|+++|+++++       +..++.|.+||..+++...... ...++...+.+++++++ |+  ++++. .++.
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~--l~v~~-~~~~   93 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ--LFVAD-MRLG   93 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE--EEEEE-TTTE
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc--EEEEE-CCCC
Confidence            346689999999998888       6778899999988876432100 01125567999999999 65  34444 3457


Q ss_pred             EEEEECCCCceeEE-ecC----CCcCEEEEeccccCCccEEEEecCC---------------CcEEEEecCCCCceeeec
Q 001163          489 IKVWDAVTGTKQYI-FEG----HESPVYSICPHHKENIQFIFSTATD---------------GKIKAWLYDNLGSRVDYD  548 (1134)
Q Consensus       489 i~iwd~~~~~~~~~-~~~----h~~~v~~~~~~~~~~~~~l~s~s~d---------------g~i~vwd~~~~~~~~~~~  548 (1134)
                      |.+||.. ++.... ...    ....+.++++++  +|.++++...+               +.|..|+.. ++ ...+.
T Consensus        94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~--~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~  168 (314)
T 1pjx_A           94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY--EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ-MIQVD  168 (314)
T ss_dssp             EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT--TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC-EEEEE
T ss_pred             EEEEeCC-CCEEEEEeccCCCccccCCcCEEECC--CCCEEEEecCcccccccccccccCCCCeEEEECCC-CC-EEEec
Confidence            9999988 765433 221    123477888754  55777766554               456666654 22 22222


Q ss_pred             CCCCCeeEEEEC----cCCCEEEEEecCCCCCeEEEEEeCC-CCee-----EEEecCCCCCceEEEEEcCCCCEEEEEeC
Q 001163          549 APGHSSTMMAYS----ADGARLFSCGTNKEGESYLVEWNES-EGAV-----KRTYHGLGKRSVGVVQFDTTKNRFLAAGD  618 (1134)
Q Consensus       549 ~~~~~v~~~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  618 (1134)
                      ........++++    |+++.++.+..   ....|.+||.. +++.     ...+..+.......++++++|+.+++...
T Consensus       169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~---~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~  245 (314)
T 1pjx_A          169 TAFQFPNGIAVRHMNDGRPYQLIVAET---PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG  245 (314)
T ss_dssp             EEESSEEEEEEEECTTSCEEEEEEEET---TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred             cCCCCcceEEEecccCCCCCEEEEEEC---CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC
Confidence            222346788999    99987666542   13469999976 4432     22333322025778999999988888878


Q ss_pred             CCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEE-ECCCcEEEEEccC
Q 001163          619 EFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS-TNDNGIKILANAD  673 (1134)
Q Consensus       619 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~~dg~i~iw~~~~  673 (1134)
                      ++.|.+||..+++.+..+..+  ...+.+++++++++.|+++ ..++.|..|++..
T Consensus       246 ~~~i~~~d~~~g~~~~~~~~~--~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          246 SSHIEVFGPDGGQPKMRIRCP--FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TTEEEEECTTCBSCSEEEECS--SSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCEEEEEcCCCCcEeEEEeCC--CCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            899999999878877777644  3568899999999955544 4568898888764

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.29  E-value=4.8e-10  Score=137.47  Aligned_cols=249  Identities=11%  Similarity=0.058  Sum_probs=164.1

Q ss_pred             CCeeEEEEcCCCCeEEEEEeCC----CcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCE
Q 001163          357 SAVKSMDFHPVQQILLVVGTNM----GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL  432 (1134)
Q Consensus       357 ~~V~~v~fsp~g~~lla~gs~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~  432 (1134)
                      ..+..++|||||++++.+.+..    .+|++||+.+|+.+.. .                 +  +......++|+ ||+.
T Consensus       129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~-----------------~--~~~k~~~~~Ws-Dg~~  187 (693)
T 3iuj_A          129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-P-----------------L--KDVKFSGISWL-GNEG  187 (693)
T ss_dssp             CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-E-----------------E--EEEESCCCEEE-TTTE
T ss_pred             EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-c-----------------c--CCceeccEEEe-CCCE
Confidence            4577899999999776554433    4799999999986542 0                 0  11113568999 9999


Q ss_pred             EEEEeCCC-------------EEEEEEccCCceee-eeeeeec-CCCCEEEEEEecCCCceEEEEEe---CCCeEEEEEC
Q 001163          433 FGVAYSKH-------------IVHLYTYHGGDELR-NHLEIEA-HVGSVNDLAFSYPNKQLSVVTCG---EDRVIKVWDA  494 (1134)
Q Consensus       433 las~s~dg-------------~v~iwd~~~~~~~~-~~~~l~~-h~~~V~~v~~s~~~~~~~l~s~s---~d~~i~iwd~  494 (1134)
                      |+.++.+.             .|++|++.++..-. ....... |...+..+.|+|||+.+ +++.+   .++.|.+||+
T Consensus       188 l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~~d~  266 (693)
T 3iuj_A          188 FFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL-LISAANSTSGNRLYVKDL  266 (693)
T ss_dssp             EEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE-EEEEESSSSCCEEEEEET
T ss_pred             EEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE-EEEEccCCCCcEEEEEEC
Confidence            99998874             49999998765311 1112233 55567899999999963 33433   2358999999


Q ss_pred             CCCc-eeEEecCCCcCEEEEeccccCCccEEEEecCC---CcEEEEecCCCCc--eeeecCCCCCeeEEEECcCCCEEEE
Q 001163          495 VTGT-KQYIFEGHESPVYSICPHHKENIQFIFSTATD---GKIKAWLYDNLGS--RVDYDAPGHSSTMMAYSADGARLFS  568 (1134)
Q Consensus       495 ~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~  568 (1134)
                      .++. ....+..+....... +.+.+ +.+++....+   +.|..+|+.....  ...+..+...+.  .|+++++.|+.
T Consensus       267 ~~~~~~~~~l~~~~~~~~~~-~~~~g-~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~  342 (693)
T 3iuj_A          267 SQENAPLLTVQGDLDADVSL-VDNKG-STLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFA  342 (693)
T ss_dssp             TSTTCCCEEEECSSSSCEEE-EEEET-TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEE
T ss_pred             CCCCCceEEEeCCCCceEEE-EeccC-CEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEE
Confidence            8774 455565566555544 33333 2455555444   5788999887654  123444444444  89999999887


Q ss_pred             EecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC----CeEEEEEcCCCcee
Q 001163          569 CGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE----FMIKFWDMDNVNLL  633 (1134)
Q Consensus       569 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~  633 (1134)
                      ...+ ++...|++||+..+. ...+.......+..+.++++++.++....+    +.|+.||+.+++..
T Consensus       343 ~~~~-~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~  409 (693)
T 3iuj_A          343 EYMV-DATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS  409 (693)
T ss_dssp             EEEE-TTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred             EEEE-CCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence            7654 345679999988544 444443333356677788888777665544    78999999887643

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.28  E-value=2.1e-10  Score=127.63  Aligned_cols=273  Identities=11%  Similarity=0.030  Sum_probs=174.6

Q ss_pred             CCeeEEEEcCCCCeEEEEEe--CCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163          357 SAVKSMDFHPVQQILLVVGT--NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       357 ~~V~~v~fsp~g~~lla~gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la  434 (1134)
                      ..+..++++|+|+ ++++..  .++.+.||.+.+++..   .+.-|.          ....+|-..+..++|+++|++++
T Consensus        17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v   82 (343)
T 2qe8_A           17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQS----------GNAIITFDTVLGIKSDGNGIVWM   82 (343)
T ss_dssp             SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred             CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence            6889999999998 555543  2343666666544322   111010          01235667999999999998777


Q ss_pred             EEeC-----CCEEEEEEccCCceeeeeeeee----cCCCCEEEEEEecCCCceEEEEEe---CCCeEEEEECCCCceeEE
Q 001163          435 VAYS-----KHIVHLYTYHGGDELRNHLEIE----AHVGSVNDLAFSYPNKQLSVVTCG---EDRVIKVWDAVTGTKQYI  502 (1134)
Q Consensus       435 s~s~-----dg~v~iwd~~~~~~~~~~~~l~----~h~~~V~~v~~s~~~~~~~l~s~s---~d~~i~iwd~~~~~~~~~  502 (1134)
                      +-..     ++.|.+||+.+++.++.. .+.    .+...+..+++++++.. ++++..   .++.|.+||+.+++..+.
T Consensus        83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~  160 (343)
T 2qe8_A           83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV  160 (343)
T ss_dssp             EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred             EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence            6544     578999999998855432 222    22345789999987653 456655   688999999999988777


Q ss_pred             ecCCCcCEE-EEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEE
Q 001163          503 FEGHESPVY-SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE  581 (1134)
Q Consensus       503 ~~~h~~~v~-~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~  581 (1134)
                      +.+|..... ...+.  .+|..+.+.+.++.++.|.              ..+..++++|+|+.|+.+...+   ..++.
T Consensus       161 ~~~~~~~~~~~~~~~--~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~---~~l~~  221 (343)
T 2qe8_A          161 LQGYPGIAPEDIDLV--IDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHS---TSMYR  221 (343)
T ss_dssp             CTTCTTTSCCSCCCE--ETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSC---SEEEE
T ss_pred             ecCCCccccccccee--ECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCC---CeEEE
Confidence            766532111 01222  2345666777788876663              2357899999999988876432   24555


Q ss_pred             EeCC---CCe-----eEE--EecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEc
Q 001163          582 WNES---EGA-----VKR--TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFN  651 (1134)
Q Consensus       582 wd~~---~~~-----~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  651 (1134)
                      ++..   .+.     ...  ...++.. ....++++++|+.+++...++.|.+||..+++....... ........++|.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~g~~g-~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~-~~~~~p~~va~~  299 (343)
T 2qe8_A          222 IKSADLSNLQLTDAELGSKIERYSEKP-ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD-EKLSWTDSFNFG  299 (343)
T ss_dssp             EEHHHHTCTTCCHHHHHTTCEEEEECC-SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC-GGGSCEEEEEEC
T ss_pred             EEHHHhcCCCCChhhhhcceEecccCC-CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC-CceecCCeeEEC
Confidence            5532   110     000  1111111 345689999999888888899999999866664433332 123457799999


Q ss_pred             CCCcEEEEEECCCcE
Q 001163          652 KEGILLAVSTNDNGI  666 (1134)
Q Consensus       652 p~~~~l~~~~~dg~i  666 (1134)
                      +++.++++.+..+.+
T Consensus       300 ~~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          300 SDGYLYFDCNQLHHS  314 (343)
T ss_dssp             TTSCEEEEECCGGGS
T ss_pred             CCCcEEEEeCccccc
Confidence            998887777654444

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.25  E-value=1.2e-09  Score=118.71  Aligned_cols=229  Identities=10%  Similarity=0.065  Sum_probs=150.9

Q ss_pred             ccEEEEEEecCC-ceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCC
Q 001163          777 MRVSRLIYTNSG-LAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKND  855 (1134)
Q Consensus       777 ~~i~~l~~spdg-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg  855 (1134)
                      ....+..|++++ ..+++...++.|..|+..                      ++......     ....+.+++++++|
T Consensus        13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~----------------------~~~~~~~~-----~~~~~~~i~~~~dG   65 (297)
T 3g4e_A           13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSF----------------------TKQVQRVT-----MDAPVSSVALRQSG   65 (297)
T ss_dssp             SBEEEEEEETTTTEEEEEETTTTEEEEEETT----------------------TCCEEEEE-----CSSCEEEEEEBTTS
T ss_pred             ccccCCeEECCCCEEEEEECCCCEEEEEECC----------------------CCcEEEEe-----CCCceEEEEECCCC
Confidence            345688899964 455555567888888654                      22221111     34568899999999


Q ss_pred             CeEEEeeCCeEEEEEccCCeEEEEecCC----CCCeEEEEEcCCCCcEEEEEeCC---------CcEEEEEccc-ceEEE
Q 001163          856 SYVMSASGGKISLFNMMTFKTMTTFMPP----PPAATFLAFHPQDNNIIAIGMED---------SSIQIYNVRV-DEVKT  921 (1134)
Q Consensus       856 ~~la~~sdg~i~lwd~~~~~~~~~~~~~----~~~v~~l~~sp~~~~~la~g~~d---------g~i~iwd~~~-~~~~~  921 (1134)
                      +++++ .++.|.+||..+++........    ...+..++++| +|+++++...+         ..-.||.+.. ++.. 
T Consensus        66 ~l~v~-~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-  142 (297)
T 3g4e_A           66 GYVAT-IGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK-  142 (297)
T ss_dssp             SEEEE-ETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-
T ss_pred             CEEEE-ECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEE-
Confidence            95554 5778999999887654333221    23478899999 78877654322         2345565543 3332 


Q ss_pred             eccCccCceEEEEEeeCCCEEE-EEeCCCcEEEEEC--CCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-ee
Q 001163          922 KLKGHQKRITGLAFSNTLNVLV-SSGADSQLCVWST--DGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HE  997 (1134)
Q Consensus       922 ~l~~h~~~V~~l~~s~d~~~l~-s~s~Dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d  997 (1134)
                      .+..+......++|+||++.|+ +.+.++.|.+|++  .++.......+.......   .....++++++|++.++. .+
T Consensus       143 ~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~---~~p~g~~~d~~G~lwva~~~~  219 (297)
T 3g4e_A          143 KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEE---QIPDGMCIDAEGKLWVACYNG  219 (297)
T ss_dssp             EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGG---CEEEEEEEBTTSCEEEEEETT
T ss_pred             EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCC---CCCCeeEECCCCCEEEEEcCC
Confidence            2333444567899999998764 5566788999997  444432222222211111   246789999999877664 45


Q ss_pred             ceEEEEeCCCcccceeeccCCCccCEEEEEEc-cCCCEEEEEec
Q 001163          998 TQIAIYEAPKLECLKQFVPREASGPITHATYS-CDSQSIYVAFE 1040 (1134)
Q Consensus       998 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s-~dg~~l~s~s~ 1040 (1134)
                      +.|..||..+++.+..+.  .+...+++++|. ||++.|+.++.
T Consensus       220 ~~v~~~d~~tG~~~~~i~--~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          220 GRVIRLDPVTGKRLQTVK--LPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             TEEEEECTTTCCEEEEEE--CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             CEEEEEcCCCceEEEEEE--CCCCCceEEEEeCCCCCEEEEEcC
Confidence            789999999999888876  335689999998 89888776654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.24  E-value=2e-09  Score=116.91  Aligned_cols=227  Identities=10%  Similarity=0.071  Sum_probs=152.4

Q ss_pred             CeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEe
Q 001163          358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY  437 (1134)
Q Consensus       358 ~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s  437 (1134)
                      -..+..|+|++..|+++...++.|..||..+++...                     ......+.+++++|+|+++++. 
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~---------------------~~~~~~~~~i~~~~dG~l~v~~-   71 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR---------------------VTMDAPVSSVALRQSGGYVATI-   71 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE---------------------EECSSCEEEEEEBTTSSEEEEE-
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE---------------------EeCCCceEEEEECCCCCEEEEE-
Confidence            445899999877788888889999999998875421                     1134679999999999966554 


Q ss_pred             CCCEEEEEEccCCceeeeeeeeec--CCCCEEEEEEecCCCceEEEEEeC---------CCeEEEEECCC-CceeEEecC
Q 001163          438 SKHIVHLYTYHGGDELRNHLEIEA--HVGSVNDLAFSYPNKQLSVVTCGE---------DRVIKVWDAVT-GTKQYIFEG  505 (1134)
Q Consensus       438 ~dg~v~iwd~~~~~~~~~~~~l~~--h~~~V~~v~~s~~~~~~~l~s~s~---------d~~i~iwd~~~-~~~~~~~~~  505 (1134)
                       ++.|.+||..+++.. .......  ....++.++++|+|+  ++++...         .....+|.+.. ++.. .+..
T Consensus        72 -~~~l~~~d~~~g~~~-~~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~~~  146 (297)
T 3g4e_A           72 -GTKFCALNWKEQSAV-VLATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVK-KYFD  146 (297)
T ss_dssp             -TTEEEEEETTTTEEE-EEEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-EEEE
T ss_pred             -CCeEEEEECCCCcEE-EEEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEE-EEee
Confidence             567999999887632 2212211  224588999999998  4554322         12334555443 3333 2333


Q ss_pred             CCcCEEEEeccccCCccE-EEEecCCCcEEEEecC--CCCce--e---eecCCCCCeeEEEECcCCCEEEEEecCCCCCe
Q 001163          506 HESPVYSICPHHKENIQF-IFSTATDGKIKAWLYD--NLGSR--V---DYDAPGHSSTMMAYSADGARLFSCGTNKEGES  577 (1134)
Q Consensus       506 h~~~v~~~~~~~~~~~~~-l~s~s~dg~i~vwd~~--~~~~~--~---~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~  577 (1134)
                      +....+.++|+++  ++. +++.+.++.|.+|+++  ++...  .   .+.........++++++|+..++...    ..
T Consensus       147 ~~~~pngi~~spd--g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~----~~  220 (297)
T 3g4e_A          147 QVDISNGLDWSLD--HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN----GG  220 (297)
T ss_dssp             EESBEEEEEECTT--SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET----TT
T ss_pred             ccccccceEEcCC--CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC----CC
Confidence            3445678888654  454 4666778899999974  22211  1   11112345678999999987766543    23


Q ss_pred             EEEEEeCCCCeeEEEecCCCCCceEEEEEc-CCCCEEEEEeC
Q 001163          578 YLVEWNESEGAVKRTYHGLGKRSVGVVQFD-TTKNRFLAAGD  618 (1134)
Q Consensus       578 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~  618 (1134)
                      .|..||..+++.+..+..... .+.+++|. |+++.|++++.
T Consensus       221 ~v~~~d~~tG~~~~~i~~p~~-~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          221 RVIRLDPVTGKRLQTVKLPVD-KTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEEEECTTTCCEEEEEECSSS-BEEEEEEESGGGCEEEEEEB
T ss_pred             EEEEEcCCCceEEEEEECCCC-CceEEEEeCCCCCEEEEEcC
Confidence            599999999999888877654 78999998 88887776663

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.23  E-value=3.8e-09  Score=119.90  Aligned_cols=240  Identities=12%  Similarity=0.015  Sum_probs=161.5

Q ss_pred             CCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEE
Q 001163          357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA  436 (1134)
Q Consensus       357 ~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~  436 (1134)
                      .....|+|+++|+ |+++...++.|++||..++.....                   ... ..... ++|+|+++.|+++
T Consensus       131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~  188 (409)
T 3hrp_A          131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI  188 (409)
T ss_dssp             CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred             CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence            4678999999998 777777889999999988765431                   111 12223 9999999999998


Q ss_pred             eCCC--EEEEEEccCCceeeeeeeeec-CCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEE----ecCCCcC
Q 001163          437 YSKH--IVHLYTYHGGDELRNHLEIEA-HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI----FEGHESP  509 (1134)
Q Consensus       437 s~dg--~v~iwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~----~~~h~~~  509 (1134)
                      ..++  .|.+|+..++........+.. +...+.+++++|++..  |+.+..++.|+.||..++.....    ..++...
T Consensus       189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~--lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~  266 (409)
T 3hrp_A          189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW--LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT  266 (409)
T ss_dssp             BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE--EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred             ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe--EEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence            8766  899999887654332211222 4566889999995553  44467788999999887764332    2222222


Q ss_pred             E--EEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCC---------------CCCeeEEEECcCCCEEEEEecC
Q 001163          510 V--YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP---------------GHSSTMMAYSADGARLFSCGTN  572 (1134)
Q Consensus       510 v--~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~---------------~~~v~~~~~s~~~~~l~~~~~~  572 (1134)
                      -  ..++|++. ++.++++-..++.|+.|+.+..  ...+...               -.....++++++|+++++-.  
T Consensus       267 ~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~--  341 (409)
T 3hrp_A          267 NPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG--  341 (409)
T ss_dssp             SSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET--
T ss_pred             CccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC--
Confidence            2  27888653 3467777778899999987643  2222111               12467899999999555542  


Q ss_pred             CCCCeEEEEEeCCCCeeEEEecCCC--------------CCceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 001163          573 KEGESYLVEWNESEGAVKRTYHGLG--------------KRSVGVVQFDTTKNRFLAAGDEFMIKFWDM  627 (1134)
Q Consensus       573 ~~~~~~i~~wd~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  627 (1134)
                       .+...|+.||+.++.... +.++.              -.....+++++++..+++-..++.|+.+++
T Consensus       342 -~~~~~I~~~~~~~G~v~~-~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          342 -FKGYCLRKLDILDGYVST-VAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             -TTTCEEEEEETTTTEEEE-EEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             -CCCCEEEEEECCCCEEEE-EeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence             035579999987776543 33320              124778999999777777778888888765

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.23  E-value=4e-09  Score=119.69  Aligned_cols=239  Identities=8%  Similarity=0.062  Sum_probs=161.8

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCC--eEEEEECCC
Q 001163          419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--VIKVWDAVT  496 (1134)
Q Consensus       419 ~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~--~i~iwd~~~  496 (1134)
                      .....|+|+++++++++...++.|++||..++.... .  ... ..... ++|+++++  .|+.++.++  .|.+||...
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~-~--~~~-~~~~~-ia~~~~g~--~l~~~d~~~~~~I~~~d~~~  203 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTT-V--HPG-FKGGK-PAVTKDKQ--RVYSIGWEGTHTVYVYMKAS  203 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEE-E--EET-CCBCB-CEECTTSS--EEEEEBSSTTCEEEEEEGGG
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEE-e--ecc-CCCCc-eeEecCCC--cEEEEecCCCceEEEEEcCC
Confidence            478899999999988888888999999999876433 1  222 22233 99999999  677777655  899999876


Q ss_pred             CceeEEe----cCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceee----ecCCCCCe--eEEEECcCCCEE
Q 001163          497 GTKQYIF----EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD----YDAPGHSS--TMMAYSADGARL  566 (1134)
Q Consensus       497 ~~~~~~~----~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~----~~~~~~~v--~~~~~s~~~~~l  566 (1134)
                      +.....+    ......+.++++++. ++ .|+.+..++.|+.||.........    ........  ..++|+|++..|
T Consensus       204 ~~~~~~~g~~~~~~~~~p~~iav~p~-~g-~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l  281 (409)
T 3hrp_A          204 GWAPTRIGQLGSTFSGKIGAVALDET-EE-WLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNF  281 (409)
T ss_dssp             TTCEEEEEECCTTSCSCCCBCEECTT-SS-EEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred             CceeEEeeeccchhcCCcEEEEEeCC-CC-eEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEE
Confidence            6554444    224455677787653 33 454577788999999886653332    11111222  389999975566


Q ss_pred             EEEecCCCCCeEEEEEeCCCCeeEEEecCCC--------------CCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCc
Q 001163          567 FSCGTNKEGESYLVEWNESEGAVKRTYHGLG--------------KRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVN  631 (1134)
Q Consensus       567 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~  631 (1134)
                      +.+..   ....|+.|+....  +..+.+..              -.....++++++++.+++-. .++.|+.|+..++.
T Consensus       282 yv~d~---~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~  356 (409)
T 3hrp_A          282 YMSDQ---NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY  356 (409)
T ss_dssp             EEEET---TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred             EEEeC---CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence            55532   2456999987643  23333321              12467899999999777777 88999999987776


Q ss_pred             eeEEEecCC------------CCCCcceEEEcCCCcEEEEEECCCcEEEEEc
Q 001163          632 LLASIDADG------------GLQASPCIRFNKEGILLAVSTNDNGIKILAN  671 (1134)
Q Consensus       632 ~~~~~~~~~------------~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~  671 (1134)
                      ........+            .......++++++|.++++-..++.|+.+++
T Consensus       357 v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          357 VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            443332100            1234678999999888888888888887764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.23  E-value=2e-09  Score=117.52  Aligned_cols=230  Identities=13%  Similarity=0.072  Sum_probs=155.8

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la  434 (1134)
                      ......+..|+|+|++|++++..++.|..|+. +++...                    +..+...+..++++++|++++
T Consensus        43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~--------------------~~~~~~~~~gl~~d~dG~l~v  101 (305)
T 3dr2_A           43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDV--------------------LLDATAFTNGNAVDAQQRLVH  101 (305)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEE--------------------EEESCSCEEEEEECTTSCEEE
T ss_pred             CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEE--------------------EeCCCCccceeeECCCCCEEE
Confidence            55667899999999988899999999999998 443211                    233556799999999999877


Q ss_pred             EEeCCCEEEEEEccCCceeeeeeeeecC-CCCEEEEEEecCCCceEEEE----EeC-------------CCeEEEEECCC
Q 001163          435 VAYSKHIVHLYTYHGGDELRNHLEIEAH-VGSVNDLAFSYPNKQLSVVT----CGE-------------DRVIKVWDAVT  496 (1134)
Q Consensus       435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h-~~~V~~v~~s~~~~~~~l~s----~s~-------------d~~i~iwd~~~  496 (1134)
                      +...++.|.+|+.. ++.........+. ...+..+++.++|+  +++|    |..             .+.|..+|..+
T Consensus       102 ~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~  178 (305)
T 3dr2_A          102 CEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG  178 (305)
T ss_dssp             EETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS
T ss_pred             EECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEEcCCC
Confidence            77677889999986 4422111111111 23467899999998  6665    332             25688888777


Q ss_pred             CceeEEecCCCcCEEEEeccccCCccEEEEecCC------CcEEEEecCCCCc---eeeecCCCCCeeEEEECcCCCEEE
Q 001163          497 GTKQYIFEGHESPVYSICPHHKENIQFIFSTATD------GKIKAWLYDNLGS---RVDYDAPGHSSTMMAYSADGARLF  567 (1134)
Q Consensus       497 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~  567 (1134)
                      ++.....  .......++|++  ++..|+.+...      +.|.+|++.....   .............++++++|+..+
T Consensus       179 g~~~~~~--~~~~p~gl~~sp--dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv  254 (305)
T 3dr2_A          179 SPLQRMA--DLDHPNGLAFSP--DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS  254 (305)
T ss_dssp             CCCEEEE--EESSEEEEEECT--TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE
T ss_pred             CcEEEEe--cCCCCcceEEcC--CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE
Confidence            7654433  334567788855  45666666554      7899999875431   111122233456789999999554


Q ss_pred             EEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCe
Q 001163          568 SCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFM  621 (1134)
Q Consensus       568 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  621 (1134)
                      +. .+     .|.+|+. +++.+..+....  .+..++|+++++.|+.++.++.
T Consensus       255 ~~-~~-----gv~~~~~-~g~~~~~~~~~~--~~~~~~f~~d~~~L~it~~~~l  299 (305)
T 3dr2_A          255 SS-GT-----GVCVFDS-DGQLLGHIPTPG--TASNCTFDQAQQRLFITGGPCL  299 (305)
T ss_dssp             CC-SS-----EEEEECT-TSCEEEEEECSS--CCCEEEECTTSCEEEEEETTEE
T ss_pred             ec-CC-----cEEEECC-CCCEEEEEECCC--ceeEEEEeCCCCEEEEEcCCeE
Confidence            43 21     3999998 577777776554  4778999999988888887543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.22  E-value=2.5e-05  Score=92.90  Aligned_cols=531  Identities=10%  Similarity=-0.014  Sum_probs=284.9

Q ss_pred             EEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEE
Q 001163          432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY  511 (1134)
Q Consensus       432 ~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~  511 (1134)
                      +|+.+ ....|+..|+.+..... ...+. .-..+..++|.+.+.. ++++-..++.|..+++........+........
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~-~~~~~-~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~   83 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNV-AIPLT-GVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE   83 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEE-ECCCC-SCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred             EEEEE-eCCcEEEEECCCCCcce-EEEcC-CCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence            44444 45678999998654221 11222 2345789999997774 456666788999999765443333332223456


Q ss_pred             EEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEE
Q 001163          512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKR  591 (1134)
Q Consensus       512 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~  591 (1134)
                      .+++.+.. +++.++-...+.|.+.+++.................+++.|....|+..-..  ....|...++.......
T Consensus        84 GlAvD~~~-~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g--~~~~I~r~~~dG~~~~~  160 (628)
T 4a0p_A           84 GMAVDWLG-KNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG--GKPKIDRAAMDGSERTT  160 (628)
T ss_dssp             EEEEETTT-TEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEE
T ss_pred             eEEEEeCC-CEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCC--CCCEEEEEeCCCCceEE
Confidence            67775433 3566777777899999987554433333334467899999976666665321  14468888876544333


Q ss_pred             EecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEE
Q 001163          592 TYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILA  670 (1134)
Q Consensus       592 ~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~  670 (1134)
                      ....  -.....+++++++..|+.+. ..+.|...|+..... ..+...  ......+++.. +.++++-...+.|...|
T Consensus       161 l~~~--~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~d  234 (628)
T 4a0p_A          161 LVPN--VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERAN  234 (628)
T ss_dssp             EECS--CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred             EECC--CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence            3332  23678899999888887776 677899999976544 333322  22345677764 44555555578888888


Q ss_pred             ccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccc
Q 001163          671 NADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEK  750 (1134)
Q Consensus       671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  750 (1134)
                      ..++.. ...+.........+           .       .+.+...    +     .....   ....    .++.  .
T Consensus       235 k~tg~~-~~~l~~~~~~p~~i-----------~-------v~~~~~q----~-----~~n~C---~~~n----g~C~--~  277 (628)
T 4a0p_A          235 KTSGQN-RTIIQGHLDYVMDI-----------L-------VFHSSRQ----S-----GWNEC---ASSN----GHCS--H  277 (628)
T ss_dssp             TTTCCS-CEEEECSCCSCCEE-----------E-------EECGGGS----C-----CCCTT---TTTG----GGCS--S
T ss_pred             CCCCCc-eEEEecCCCCccee-----------e-------eeeeccc----c-----cceEe---ccCC----CCcc--h
Confidence            766632 22232211100000           0       0000000    0     00000   0000    0000  0


Q ss_pred             cceeeecccCCcccee---ccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCC
Q 001163          751 SRIWKLTEITEPSQCR---SLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQP  827 (1134)
Q Consensus       751 i~iw~~~~~~~~~~~~---~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~  827 (1134)
                      +.+-....   ...|.   -+.+    .....+|.   +...+++.+.. ..|+-..+..                    
T Consensus       278 ~C~~~~~~---~~~C~C~~g~~l----~~d~~~C~---~~~~~Ll~s~~-~~i~~i~l~~--------------------  326 (628)
T 4a0p_A          278 LCLAVPVG---GFVCGCPAHYSL----NADNRTCS---APTTFLLFSQK-SAINRMVIDE--------------------  326 (628)
T ss_dssp             EEEEETTT---EEEEECSTTCEE----CTTSSCEE---CCSSEEEEEET-TEEEEECCCT--------------------
T ss_pred             hhhcCCCC---CeeEEcCCCcEe----cccCCcCc---cccceeeeecc-ceEEEEeccc--------------------
Confidence            00000000   00000   0000    00011111   11223333322 2333222211                    


Q ss_pred             CCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee--CCeEEEEEccCCeEEEEecC------CCCCeEEEEEcCCCCcE
Q 001163          828 PSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMP------PPPAATFLAFHPQDNNI  899 (1134)
Q Consensus       828 ~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s--dg~i~lwd~~~~~~~~~~~~------~~~~v~~l~~sp~~~~~  899 (1134)
                      .........+.   .-..+.+++|++.+..|..+.  .+.|+.++.........+..      ....+..+|+...++.+
T Consensus       327 ~~~~~~~l~~~---~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nL  403 (628)
T 4a0p_A          327 QQSPDIILPIH---SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYI  403 (628)
T ss_dssp             TCCCCEECCCT---TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEE
T ss_pred             ccCceEEEEeh---hcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeE
Confidence            00000011111   234578899999877777776  57899888765433333332      23468899999844556


Q ss_pred             EEEEeCCCcEEEEEcccceEEEec-cCccCceEEEEEee-CCCEEEEEeCCC--cEEEEECCCCccccceeeeecCCCCC
Q 001163          900 IAIGMEDSSIQIYNVRVDEVKTKL-KGHQKRITGLAFSN-TLNVLVSSGADS--QLCVWSTDGWEKQASKFLTIPNGRTA  975 (1134)
Q Consensus       900 la~g~~dg~i~iwd~~~~~~~~~l-~~h~~~V~~l~~s~-d~~~l~s~s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~  975 (1134)
                      ..+-+..+.|.+.++. |+....+ ........+|++.| .|.+.++-....  .|...+++....   ..+ .... . 
T Consensus       404 Y~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~---~~l-~~~~-l-  476 (628)
T 4a0p_A          404 YWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER---EVL-FFSG-L-  476 (628)
T ss_dssp             EEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC---EEE-ECSS-C-
T ss_pred             EEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc---EEE-Eecc-C-
Confidence            6666677899999986 4444333 33446689999999 555555533332  566666665321   111 1111 1 


Q ss_pred             CCCCceEEEEcCCCCEEEEE--eeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCc
Q 001163          976 SALADTRVQFHLDQTHLLAV--HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLR 1053 (1134)
Q Consensus       976 ~~~~v~~l~fs~dg~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~ 1053 (1134)
                        .....++++++++.|..+  ..+.|..++++ |.....+.. .......++++.. +.+..+=...+.|...|-.+|+
T Consensus       477 --~~P~gla~D~~~~~LYw~D~~~~~I~~~~~d-G~~r~~~~~-~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~  551 (628)
T 4a0p_A          477 --SKPIALALDSRLGKLFWADSDLRRIESSDLS-GANRIVLED-SNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGRE  551 (628)
T ss_dssp             --SCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEEC-SSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSS
T ss_pred             --CCccEEEEeCCCCEEEEEeCCCCEEEEEeCC-CCceEEEEc-CCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCC
Confidence              346889999998888875  34789999985 444444432 2234567777754 4444444455788888888776


Q ss_pred             ceeec
Q 001163         1054 LRCRI 1058 (1134)
Q Consensus      1054 ~~~~~ 1058 (1134)
                      ....+
T Consensus       552 ~~~~i  556 (628)
T 4a0p_A          552 GRTKV  556 (628)
T ss_dssp             CCEEE
T ss_pred             CcEEE
Confidence            54433

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.22  E-value=2.3e-10  Score=127.27  Aligned_cols=273  Identities=9%  Similarity=0.010  Sum_probs=174.7

Q ss_pred             ccEEEEEEecCCceeeeecc--CCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC
Q 001163          777 MRVSRLIYTNSGLAILALAS--NAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN  854 (1134)
Q Consensus       777 ~~i~~l~~spdg~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d  854 (1134)
                      ..+..++++++|+.+++...  ++.++||.+..      ++..      -|-  +..   ..  ...+-..+..++++++
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~------g~~~------~~p--~~~---~~--~~~~~~~p~gv~~d~~   77 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ------DGLI------PFP--PQS---GN--AIITFDTVLGIKSDGN   77 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET------TEEE------ESC--CCC---SS--CCCCCSCEEEEEECSS
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECC------CCee------cCC--Ccc---cC--cccceeEeeEEEEcCC
Confidence            46889999999998887542  34356665541      1111      000  000   00  1125678899999999


Q ss_pred             CCeEEEee------CCeEEEEEccCCeEEEEecCC------CCCeEEEEEcCCCCcEEEEEe---CCCcEEEEEcccceE
Q 001163          855 DSYVMSAS------GGKISLFNMMTFKTMTTFMPP------PPAATFLAFHPQDNNIIAIGM---EDSSIQIYNVRVDEV  919 (1134)
Q Consensus       855 g~~la~~s------dg~i~lwd~~~~~~~~~~~~~------~~~v~~l~~sp~~~~~la~g~---~dg~i~iwd~~~~~~  919 (1134)
                      |+++++-.      +++|.+||+.+++.+..+..+      ...+..++++++++..+++..   .++.|.+||+.+++.
T Consensus        78 g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~  157 (343)
T 2qe8_A           78 GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA  157 (343)
T ss_dssp             SEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE
T ss_pred             CcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE
Confidence            98766543      378999999999877776532      234689999984455556555   678999999999988


Q ss_pred             EEeccCccCceE-EEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEe-e
Q 001163          920 KTKLKGHQKRIT-GLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVH-E  997 (1134)
Q Consensus       920 ~~~l~~h~~~V~-~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~-d  997 (1134)
                      ...+.+|..... ...++++|..+.+.+.|+.++.|..                      .+..++|+|||+.|+++. .
T Consensus       158 ~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~----------------------~~~gia~s~dg~~ly~~~~~  215 (343)
T 2qe8_A          158 ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL----------------------GVNGIVLDAENEWLYLSPMH  215 (343)
T ss_dssp             EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC----------------------CEEEEEECTTSCEEEEEESS
T ss_pred             EEEecCCCcccccccceeECCEEEEeccCCCceeceec----------------------ccceeEeccCCCEEEEEeCC
Confidence            777766543211 1456678888888888887766531                      256799999999888853 2


Q ss_pred             -ceEEEEeCCC---c-----ccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCC
Q 001163          998 -TQIAIYEAPK---L-----ECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNP 1068 (1134)
Q Consensus       998 -~~i~iwd~~~---~-----~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h 1068 (1134)
                       +.+..++...   +     +....+...++......++++++|.++++...++.|.+||..+++........       
T Consensus       216 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-------  288 (343)
T 2qe8_A          216 STSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-------  288 (343)
T ss_dssp             CSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-------
T ss_pred             CCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-------
Confidence             3555554321   1     11111111122335667999999999999999999999998667643222211       


Q ss_pred             CCCceeEEEEecCCCCCEEEEEecCCcEEEE
Q 001163         1069 SLRVYPLVIAGNPTDPNQFALGLTDGGVYII 1099 (1134)
Q Consensus      1069 ~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW 1099 (1134)
                       ....+-.++|.+ ++.++++.+..+.+.+|
T Consensus       289 -~~~~p~~va~~~-~g~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          289 -KLSWTDSFNFGS-DGYLYFDCNQLHHSAPL  317 (343)
T ss_dssp             -GGSCEEEEEECT-TSCEEEEECCGGGSGGG
T ss_pred             -ceecCCeeEECC-CCcEEEEeCcccccccc
Confidence             112345567878 57888887766555444

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.21  E-value=6.1e-10  Score=136.51  Aligned_cols=245  Identities=10%  Similarity=0.122  Sum_probs=160.5

Q ss_pred             ccCCCCEEEEEEcCCCCEEEEEe-----CCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCC--
Q 001163          415 SDYTASVNRVMWSPDGTLFGVAY-----SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--  487 (1134)
Q Consensus       415 ~~h~~~V~~l~~spd~~~las~s-----~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~--  487 (1134)
                      .+|...+..++|||||++||.+.     .+..|++||+.+|+.+..  .+.+  .....++|+ ||+  .|+.++.+.  
T Consensus       125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~--~k~~~~~Ws-Dg~--~l~y~~~~~~~  197 (693)
T 3iuj_A          125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKD--VKFSGISWL-GNE--GFFYSSYDKPD  197 (693)
T ss_dssp             TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEE--EESCCCEEE-TTT--EEEEEESSCCC
T ss_pred             CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCC--ceeccEEEe-CCC--EEEEEEecCcc
Confidence            34667899999999999999543     335799999999985432  1221  113578999 999  566666653  


Q ss_pred             -----------eEEEEECCCCc----eeEEecC-CCcCEEEEeccccCCccEEEEec----CCCcEEEEecCCCC-ceee
Q 001163          488 -----------VIKVWDAVTGT----KQYIFEG-HESPVYSICPHHKENIQFIFSTA----TDGKIKAWLYDNLG-SRVD  546 (1134)
Q Consensus       488 -----------~i~iwd~~~~~----~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s----~dg~i~vwd~~~~~-~~~~  546 (1134)
                                 .|++|++.++.    ++..... |...+.++.++  +||++|+...    .++.|+++|+.... ....
T Consensus       198 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~S--pDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~  275 (693)
T 3iuj_A          198 GSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVT--EDDRFLLISAANSTSGNRLYVKDLSQENAPLLT  275 (693)
T ss_dssp             -------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEEC--TTSCEEEEEEESSSSCCEEEEEETTSTTCCCEE
T ss_pred             cccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEc--CCCCEEEEEEccCCCCcEEEEEECCCCCCceEE
Confidence                       49999988764    3333333 44556777775  4556664432    23589999987664 3334


Q ss_pred             ecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCee--EEEecCCCCCceEEEEEcCCCCEEEEEe-CCC--e
Q 001163          547 YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV--KRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEF--M  621 (1134)
Q Consensus       547 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg--~  621 (1134)
                      +..+....... ++++|..|+..+........|..+|+.++..  ...+..+....+   .|+++++.|+... .++  .
T Consensus       276 l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~---~~s~~g~~lv~~~~~~g~~~  351 (693)
T 3iuj_A          276 VQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL---TVHSGSGYLFAEYMVDATAR  351 (693)
T ss_dssp             EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE---EEEEETTEEEEEEEETTEEE
T ss_pred             EeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE---EEEEECCEEEEEEEECCeeE
Confidence            44444444444 7788887776665433356799999988754  234555544233   8889999888776 444  6


Q ss_pred             EEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECC----CcEEEEEccCC
Q 001163          622 IKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND----NGIKILANADG  674 (1134)
Q Consensus       622 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d----g~i~iw~~~~~  674 (1134)
                      |++|++..+ ....+... ....+..+.+++++..++....+    +.+..||+.++
T Consensus       352 l~~~d~~g~-~~~~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g  406 (693)
T 3iuj_A          352 VEQFDYEGK-RVREVALP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG  406 (693)
T ss_dssp             EEEECTTSC-EEEEECCS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred             EEEEECCCC-eeEEeecC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence            899998754 44555432 23345666778888766655544    78999998776

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.21  E-value=3.6e-10  Score=124.50  Aligned_cols=242  Identities=9%  Similarity=-0.005  Sum_probs=156.3

Q ss_pred             EEEEecCCceeeeec----------cCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccC-CCCCC---CCCCe
Q 001163          781 RLIYTNSGLAILALA----------SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTND-ISDTN---PEDAV  846 (1134)
Q Consensus       781 ~l~~spdg~~l~~~~----------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~---h~~~v  846 (1134)
                      .++++|||++++++.          .++.|.+||..                      +++..... +.+..   .....
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~----------------------T~~vv~~I~v~~~~~~~~g~~P  126 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV----------------------TFLPIADIELPDAPRFSVGPRV  126 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT----------------------TCCEEEEEEETTSCSCCBSCCT
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECC----------------------CCCEEEEEECCCccccccCCCc
Confidence            689999999998886          36778887544                      44333221 11000   01235


Q ss_pred             eEEEEcCCCCeEEEee---CCeEEE--EEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEccc-----
Q 001163          847 PCFALSKNDSYVMSAS---GGKISL--FNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV-----  916 (1134)
Q Consensus       847 ~~v~~s~dg~~la~~s---dg~i~l--wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~-----  916 (1134)
                      ..++++|||++++++.   ++.+.+  +|+.+   +.++....  +  ..+.|++.+.+++.+.||.+.+.++.+     
T Consensus       127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~--~--~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~  199 (368)
T 1mda_H          127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS--C--FHIHPGAAATHYLGSCPASLAASDLAAAPAAA  199 (368)
T ss_dssp             TSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS--C--CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred             ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC--c--eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence            6899999999999886   356888  99877   44443211  1  223343455666777889888889886     


Q ss_pred             ceEEEe----ccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeec------CCCCCCCCCceEEEEc
Q 001163          917 DEVKTK----LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIP------NGRTASALADTRVQFH  986 (1134)
Q Consensus       917 ~~~~~~----l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~l~fs  986 (1134)
                      ++....    +.-...+.   + ++++..++..+. +.|.+.|+.+........+...      .+..+  .....++|+
T Consensus       200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p--~g~~~v~~s  272 (368)
T 1mda_H          200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRS--AGFQMVAKL  272 (368)
T ss_dssp             EECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE--CSSSCEEEE
T ss_pred             CeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccccc--CcceeeEEc
Confidence            543321    11122333   3 667777666666 8999999875331111111111      00000  122337899


Q ss_pred             CCCCEEEEE-e---------eceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCE-EEEEe-cCCcEEEeecCCCcc
Q 001163          987 LDQTHLLAV-H---------ETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQS-IYVAF-EEGSVGVLTASTLRL 1054 (1134)
Q Consensus       987 ~dg~~l~~~-~---------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~-l~s~s-~Dg~i~vwd~~~~~~ 1054 (1134)
                      ||++.++++ .         ++.+.++|+.+++.+..+...   .....++|++||++ +++.. .+++|.++|+.+++.
T Consensus       273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg---~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kv  349 (368)
T 1mda_H          273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD  349 (368)
T ss_dssp             TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred             CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC---CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcE
Confidence            999998874 3         236779999999999888742   36889999999985 55555 489999999999999


Q ss_pred             eeecCCC
Q 001163         1055 RCRINPT 1061 (1134)
Q Consensus      1055 ~~~~~~~ 1061 (1134)
                      +.++...
T Consensus       350 v~~I~vg  356 (368)
T 1mda_H          350 QSSVELD  356 (368)
T ss_dssp             EEECCCC
T ss_pred             EEEEECC
Confidence            9887733

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.20  E-value=6.9e-09  Score=125.69  Aligned_cols=193  Identities=13%  Similarity=0.100  Sum_probs=129.5

Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEecCCCcC----------E-EEEeccccCCccEEEEecCCCcEEEEecCCCCceeee
Q 001163          479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESP----------V-YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY  547 (1134)
Q Consensus       479 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~----------v-~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~  547 (1134)
                      .++.++.++.|.-+|..+|+.+.++......          + ..+++    .+..|+.++.|+.|..+|..+++....+
T Consensus        79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~v~v~~~dg~l~alD~~tG~~~W~~  154 (677)
T 1kb0_A           79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL----WKGKVYVGAWDGRLIALDAATGKEVWHQ  154 (677)
T ss_dssp             EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE----ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence            4677777899999999999999887643210          0 11222    2257888899999999999998888776


Q ss_pred             cCC-C----CCeeEEEECcCCCEEEEEecCCC--CCeEEEEEeCCCCeeEEEecCCCCC---------------------
Q 001163          548 DAP-G----HSSTMMAYSADGARLFSCGTNKE--GESYLVEWNESEGAVKRTYHGLGKR---------------------  599 (1134)
Q Consensus       548 ~~~-~----~~v~~~~~s~~~~~l~~~~~~~~--~~~~i~~wd~~~~~~~~~~~~~~~~---------------------  599 (1134)
                      ... .    ..+.+.-.. .+..+++++...+  .++.|+.+|..+|+.+..+......                     
T Consensus       155 ~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g  233 (677)
T 1kb0_A          155 NTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG  233 (677)
T ss_dssp             ETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred             cCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence            654 2    112111111 2345555443211  2467999999999999877653221                     


Q ss_pred             ----------ceEEEEEcCCCCEEEEEeCCC-------------------eEEEEEcCCCceeEEEecCCCC-------C
Q 001163          600 ----------SVGVVQFDTTKNRFLAAGDEF-------------------MIKFWDMDNVNLLASIDADGGL-------Q  643 (1134)
Q Consensus       600 ----------~v~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~-------~  643 (1134)
                                ....+++++++..++.+..++                   .|..+|..+|+.+-.++...+.       .
T Consensus       234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~  313 (677)
T 1kb0_A          234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ  313 (677)
T ss_dssp             CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred             ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCC
Confidence                      012468889999999887664                   5999999999998887653221       1


Q ss_pred             CcceEEEcCCC---cEEEEEECCCcEEEEEccCCce
Q 001163          644 ASPCIRFNKEG---ILLAVSTNDNGIKILANADGIR  676 (1134)
Q Consensus       644 ~v~~v~~sp~~---~~l~~~~~dg~i~iw~~~~~~~  676 (1134)
                      ....+....+|   ..++.++.+|.++++|..+++.
T Consensus       314 ~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~  349 (677)
T 1kb0_A          314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF  349 (677)
T ss_dssp             CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence            12222333467   6889999999999999999843

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.19  E-value=3.7e-10  Score=124.49  Aligned_cols=183  Identities=13%  Similarity=0.119  Sum_probs=133.8

Q ss_pred             CeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEe
Q 001163          358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY  437 (1134)
Q Consensus       358 ~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s  437 (1134)
                      .++.+++++... ++++|+.++ +.+|+++........       ....  ++......+.. |++++|  |+++|+++ 
T Consensus        39 ~~nlLais~~~g-ll~a~~~~~-l~v~~~~~l~~~~~~-------~~~~--~~~~~~~~lp~-V~~l~f--d~~~L~v~-  103 (388)
T 1xip_A           39 SLQNLDISNSKS-LFVAASGSK-AVVGELQLLRDHITS-------DSTP--LTFKWEKEIPD-VIFVCF--HGDQVLVS-  103 (388)
T ss_dssp             CCBCEEEETTTT-EEEEEETTE-EEEEEHHHHHHHHHS-------SSCC--CCCSEEEECTT-EEEEEE--ETTEEEEE-
T ss_pred             cccEEEEcCCCC-EEEEeCCCE-EEEEEhhHhhhhhcc-------cccc--ccceEEeeCCC-eeEEEE--CCCEEEEE-
Confidence            688999999998 567888775 556998654411000       0000  11111234666 999999  99999999 


Q ss_pred             CCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccc
Q 001163          438 SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHH  517 (1134)
Q Consensus       438 ~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~  517 (1134)
                      .++.|++||+.+.....   .+..|...+.++.+.+..    +++++.||.|.+||+.++....    +...|.|++|++
T Consensus       104 ~~~~l~v~dv~sl~~~~---~~~~~~~~v~~i~~~~p~----~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSp  172 (388)
T 1xip_A          104 TRNALYSLDLEELSEFR---TVTSFEKPVFQLKNVNNT----LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTN  172 (388)
T ss_dssp             ESSEEEEEESSSTTCEE---EEEECSSCEEEEEECSSE----EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECS
T ss_pred             cCCcEEEEEchhhhccC---ccceeecceeeEEecCCC----EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcC
Confidence            88999999998765333   456688889988877542    7888999999999999887654    456899999976


Q ss_pred             cCCccEEEEecCCCcEEEEecCCCCc--eeee------c---CCCCCeeEEEECcCCCEEEEEe
Q 001163          518 KENIQFIFSTATDGKIKAWLYDNLGS--RVDY------D---APGHSSTMMAYSADGARLFSCG  570 (1134)
Q Consensus       518 ~~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~------~---~~~~~v~~~~~s~~~~~l~~~~  570 (1134)
                      .+    ++.|..||.+++|+.+....  ...+      .   .+...|.++.|.+++.++++-.
T Consensus       173 kG----~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          173 SQ----LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             SE----EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             Cc----eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            44    67899999999998876553  3333      2   2567899999999998888654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.19  E-value=1.7e-10  Score=127.11  Aligned_cols=173  Identities=13%  Similarity=0.096  Sum_probs=133.7

Q ss_pred             CCeeEEEEcCCCCeEEEeeCCeEEEEEccCCe-----------EEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 001163          844 DAVPCFALSKNDSYVMSASGGKISLFNMMTFK-----------TMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIY  912 (1134)
Q Consensus       844 ~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~-----------~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iw  912 (1134)
                      ..+..+++++...++++|+...+.+|++.+.+           ...... +.. |+.++|   ++.+|+++ .++.|++|
T Consensus        38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f---d~~~L~v~-~~~~l~v~  111 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF---HGDQVLVS-TRNALYSL  111 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred             ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence            46889999999999999997788889976443           112232 455 999999   56788888 88999999


Q ss_pred             EcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEE
Q 001163          913 NVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHL  992 (1134)
Q Consensus       913 d~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l  992 (1134)
                      |+.+.........|...+.++.+.+.  .+++++.||.|.+||++.+...     ..       ...|++++|||+| ..
T Consensus       112 dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~-----~~-------~~~Vs~v~WSpkG-~~  176 (388)
T 1xip_A          112 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK-----QL-------AQNVTSFDVTNSQ-LA  176 (388)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE-----EE-------EESEEEEEECSSE-EE
T ss_pred             EchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccc-----cc-------cCCceEEEEcCCc-eE
Confidence            99876555566677888888877654  3888999999999999976532     11       1359999999999 44


Q ss_pred             EEEeeceEEEEeCCCccc--ceeecc-------CCCccCEEEEEEccCCCEEEE
Q 001163          993 LAVHETQIAIYEAPKLEC--LKQFVP-------REASGPITHATYSCDSQSIYV 1037 (1134)
Q Consensus       993 ~~~~d~~i~iwd~~~~~~--~~~~~~-------~~h~~~v~~~~~s~dg~~l~s 1037 (1134)
                      +...||++++|+...+++  .+.+..       .+|...|.+++|.+++.+|++
T Consensus       177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            446899999999887775  444421       146789999999999999886

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.16  E-value=1.2e-08  Score=112.25  Aligned_cols=223  Identities=14%  Similarity=0.036  Sum_probs=148.1

Q ss_pred             eeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeC
Q 001163          359 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS  438 (1134)
Q Consensus       359 V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~  438 (1134)
                      ..+.+|+|++..+++++..++.|..||..+++...      |               .....|.+++|+|+|+++++. .
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~------~---------------~~~~~v~~i~~~~dg~l~v~~-~  108 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV------H---------------ALPFMGSALAKISDSKQLIAS-D  108 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE------E---------------ECSSCEEEEEEEETTEEEEEE-T
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE------E---------------ECCCcceEEEEeCCCeEEEEE-C
Confidence            46889999987788888889999999998875321      1               123579999999999988765 4


Q ss_pred             CCEEEEEEccCCceeeeeeeee-c-CCCCEEEEEEecCCCceEEEEEeC------CCeEEEEECCCCceeEEecCCCcCE
Q 001163          439 KHIVHLYTYHGGDELRNHLEIE-A-HVGSVNDLAFSYPNKQLSVVTCGE------DRVIKVWDAVTGTKQYIFEGHESPV  510 (1134)
Q Consensus       439 dg~v~iwd~~~~~~~~~~~~l~-~-h~~~V~~v~~s~~~~~~~l~s~s~------d~~i~iwd~~~~~~~~~~~~h~~~v  510 (1134)
                      + .|.+||..+++... ..... + ....+..++++|+|+  ++++...      .+.|..+|  +++... +..+....
T Consensus       109 ~-gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~  181 (326)
T 2ghs_A          109 D-GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIP  181 (326)
T ss_dssp             T-EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSE
T ss_pred             C-CEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCccc
Confidence            4 49999998876422 21111 1 124689999999998  4554432      24555566  554433 32233456


Q ss_pred             EEEeccccCCccEE-EEecCCCcEEEEecC--CC-Cc---ee--eecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEE
Q 001163          511 YSICPHHKENIQFI-FSTATDGKIKAWLYD--NL-GS---RV--DYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE  581 (1134)
Q Consensus       511 ~~~~~~~~~~~~~l-~s~s~dg~i~vwd~~--~~-~~---~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~  581 (1134)
                      ..++|++  +++.+ ++.+.++.|.+|+++  ++ ..   ..  .+.........++++++|++.++...    ...|..
T Consensus       182 ~~i~~s~--dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~----~~~v~~  255 (326)
T 2ghs_A          182 NSICFSP--DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVDR  255 (326)
T ss_dssp             EEEEECT--TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEEE
T ss_pred             CCeEEcC--CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC----CCEEEE
Confidence            7788854  44555 555667899999986  33 21   11  11222345678999999987766532    235999


Q ss_pred             EeCCCCeeEEEecCCCCCceEEEEEc-CCCCEEEEEeC
Q 001163          582 WNESEGAVKRTYHGLGKRSVGVVQFD-TTKNRFLAAGD  618 (1134)
Q Consensus       582 wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~  618 (1134)
                      ||. +++.+..+..... .+.+++|+ ++++.|++++.
T Consensus       256 ~d~-~g~~~~~i~~~~~-~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          256 YDT-DGNHIARYEVPGK-QTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             ECT-TCCEEEEEECSCS-BEEEEEEESTTSCEEEEEEB
T ss_pred             ECC-CCCEEEEEECCCC-CcEEEEEecCCCCEEEEEec
Confidence            998 6777777766544 68899998 88877766653

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.16  E-value=5.1e-09  Score=127.12  Aligned_cols=79  Identities=11%  Similarity=0.052  Sum_probs=58.9

Q ss_pred             CeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCc-eEEEEEeeCCCEE
Q 001163          864 GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKR-ITGLAFSNTLNVL  942 (1134)
Q Consensus       864 g~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~~l  942 (1134)
                      |.|+.||+.+++.+..+..+.. ...-.++. .+.++++|+.||.++.||..+|+.+.+++...+. ..-+.|+.+|+..
T Consensus       455 g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qy  532 (689)
T 1yiq_A          455 GKLIAWDPVKQQAAWEVPYVTI-FNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQY  532 (689)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             eeEEEEECCCCCeEeEccCCCC-ccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEE
Confidence            6799999999999988764432 23334455 5668999999999999999999999888754332 2457788888754


Q ss_pred             EE
Q 001163          943 VS  944 (1134)
Q Consensus       943 ~s  944 (1134)
                      +.
T Consensus       533 v~  534 (689)
T 1yiq_A          533 VT  534 (689)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.16  E-value=5.4e-09  Score=126.63  Aligned_cols=203  Identities=11%  Similarity=0.095  Sum_probs=135.8

Q ss_pred             EEEEEcCCCCcEEEEEeCCC-------------------cEEEEEcccceEEEeccC--cc-------CceEEEEEeeCC
Q 001163          888 TFLAFHPQDNNIIAIGMEDS-------------------SIQIYNVRVDEVKTKLKG--HQ-------KRITGLAFSNTL  939 (1134)
Q Consensus       888 ~~l~~sp~~~~~la~g~~dg-------------------~i~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~  939 (1134)
                      ..++++| ++.+|+.++.++                   .|..+|..+|+.+..++.  |.       ....-+....+|
T Consensus       246 ~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG  324 (677)
T 1kb0_A          246 DSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAG  324 (677)
T ss_dssp             SCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETT
T ss_pred             cceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCC
Confidence            3578888 677888877664                   499999999998877653  31       122223444577


Q ss_pred             ---CEEEEEeCCCcEEEEECCCCccccceeeee-c-------CCC-------------------CCCCCCceEEEEcCCC
Q 001163          940 ---NVLVSSGADSQLCVWSTDGWEKQASKFLTI-P-------NGR-------------------TASALADTRVQFHLDQ  989 (1134)
Q Consensus       940 ---~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~-~-------~~~-------------------~~~~~~v~~l~fs~dg  989 (1134)
                         ..++.++.+|.++++|..+++..-...... .       .+.                   ......-..++|+|++
T Consensus       325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~  404 (677)
T 1kb0_A          325 KPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT  404 (677)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT
T ss_pred             cEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC
Confidence               689999999999999999987532111000 0       000                   0000011357899998


Q ss_pred             CEEEEE-ee-------------------------------------------ceEEEEeCCCcccceeeccCCCccCEEE
Q 001163          990 THLLAV-HE-------------------------------------------TQIAIYEAPKLECLKQFVPREASGPITH 1025 (1134)
Q Consensus       990 ~~l~~~-~d-------------------------------------------~~i~iwd~~~~~~~~~~~~~~h~~~v~~ 1025 (1134)
                      .++++. .+                                           +.|..||+.+++.+..+..   ...+.+
T Consensus       405 ~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~  481 (677)
T 1kb0_A          405 GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH---VSPWNG  481 (677)
T ss_dssp             TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE---SSSCCC
T ss_pred             CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC---CCCCcC
Confidence            888773 32                                           7899999999998777652   334455


Q ss_pred             EEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCC-EEEEEec------------
Q 001163         1026 ATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPN-QFALGLT------------ 1092 (1134)
Q Consensus      1026 ~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~-~l~s~~~------------ 1092 (1134)
                      ..++.+|.++++++.||.+++||+.+|+.+..+....    +  ..-.++  .|.+ +++ ++++.+.            
T Consensus       482 g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~----~--~~~~p~--~y~~-~G~~~v~~~~G~~~~~~~~~~~~  552 (677)
T 1kb0_A          482 GTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT----G--VVAAPS--TYMV-DGRQYVSVAVGWGGVYGLAARAT  552 (677)
T ss_dssp             CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS----C--CCSCCE--EEEE-TTEEEEEEEECCCHHHHHHCCSC
T ss_pred             cceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC----C--cccCCE--EEEe-CCEEEEEEeccCCcccccccccc
Confidence            6677889999999999999999999999998876332    1  112234  4555 454 5554333            


Q ss_pred             ----CCcEEEEeCCC
Q 001163         1093 ----DGGVYIIEPLE 1103 (1134)
Q Consensus      1093 ----Dg~v~vW~~~~ 1103 (1134)
                          .+.+..|.+..
T Consensus       553 ~~~~~~~l~~f~l~~  567 (677)
T 1kb0_A          553 ERQGPGTVYTFVVGG  567 (677)
T ss_dssp             SCCCCCEEEEEEETC
T ss_pred             ccCCCCeEEEEeccc
Confidence                46889998874

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.14  E-value=2.7e-09  Score=117.46  Aligned_cols=268  Identities=9%  Similarity=-0.028  Sum_probs=171.3

Q ss_pred             eEEEEEeCCC----cEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEe--------
Q 001163          370 ILLVVGTNMG----DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY--------  437 (1134)
Q Consensus       370 ~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s--------  437 (1134)
                      +++++...++    +|.++|..+++.+.+..                  .+. .+  .+++|||++++.++.        
T Consensus        33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~------------------vG~-~P--~i~~spDg~~lyVan~~~~r~~~   91 (368)
T 1mda_H           33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSL------------------GAF-LS--LAVAGHSGSDFALASTSFARSAK   91 (368)
T ss_dssp             EEEEEECTTTCSSEEEEEEETTTTEEEEEEE------------------ECT-TC--EEEECTTSSCEEEEEEEETTTTS
T ss_pred             eEEEECCccCCccceEEEEECCCCeEEEEEe------------------CCC-CC--ceEECCCCCEEEEEccccccccc
Confidence            4555555555    88899999998876421                  222 34  799999999999886        


Q ss_pred             --CCCEEEEEEccCCceeeeeeeeec-C----CCCEEEEEEecCCCceEEEEEeC--CCeEEE--EECCCCceeEEecCC
Q 001163          438 --SKHIVHLYTYHGGDELRNHLEIEA-H----VGSVNDLAFSYPNKQLSVVTCGE--DRVIKV--WDAVTGTKQYIFEGH  506 (1134)
Q Consensus       438 --~dg~v~iwd~~~~~~~~~~~~l~~-h----~~~V~~v~~s~~~~~~~l~s~s~--d~~i~i--wd~~~~~~~~~~~~h  506 (1134)
                        .++.|.+||..+++.+.... +.+ .    ......++|+|||+.  ++.+..  +..+.+  +|+.+   +.++.--
T Consensus        92 G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~--lyVan~~~~~~v~V~~iD~~t---v~~i~v~  165 (368)
T 1mda_H           92 GKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC--LLFFLFGSSAAAGLSVPGASD---DQLTKSA  165 (368)
T ss_dssp             SSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC--EEEEECSSSCEEEEEETTTEE---EEEEECS
T ss_pred             CCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEccCCCCeEEEEEEchhh---ceEEECC
Confidence              36889999999998776432 220 0    123567999999995  555443  467888  99877   4444311


Q ss_pred             CcCEEEEeccccCCccEEEEecCCCcEEEEecCC----CCcee-----eecCCCCCeeEEEECcCCCEEEEEecCCCCCe
Q 001163          507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN----LGSRV-----DYDAPGHSSTMMAYSADGARLFSCGTNKEGES  577 (1134)
Q Consensus       507 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~----~~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~  577 (1134)
                       +.   ..+.+.+. ..+++.+.|+.+.+.|+..    .....     .+.....+.   . ++++..++..+.     +
T Consensus       166 -~~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-----~  231 (368)
T 1mda_H          166 -SC---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-----S  231 (368)
T ss_dssp             -SC---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-----S
T ss_pred             -Cc---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-----C
Confidence             11   12233333 3556677788888888875    11111     011111232   3 566666655543     2


Q ss_pred             EEEEEeCCCCe--eEEEecCCC------C---CceEEEEEcCCCCEEEEEeC---------CCeEEEEEcCCCceeEEEe
Q 001163          578 YLVEWNESEGA--VKRTYHGLG------K---RSVGVVQFDTTKNRFLAAGD---------EFMIKFWDMDNVNLLASID  637 (1134)
Q Consensus       578 ~i~~wd~~~~~--~~~~~~~~~------~---~~v~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~  637 (1134)
                      .+.+.|..++.  .+..+....      .   .....++++|++++++.+..         ++.+.++|+.+.+.+..+.
T Consensus       232 ~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~  311 (368)
T 1mda_H          232 SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS  311 (368)
T ss_dssp             CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE
T ss_pred             EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE
Confidence            48888886542  232222110      0   01122689999998887643         2356699999999998886


Q ss_pred             cCCCCCCcceEEEcCCCc-EEEEEE-CCCcEEEEEccCCceeEEEec
Q 001163          638 ADGGLQASPCIRFNKEGI-LLAVST-NDNGIKILANADGIRLLRTVE  682 (1134)
Q Consensus       638 ~~~~~~~v~~v~~sp~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~~~  682 (1134)
                      ...   ....++|+|||+ ++++.. .++.|.++|+.++ +.++.+.
T Consensus       312 vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I~  354 (368)
T 1mda_H          312 NGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVE  354 (368)
T ss_dssp             EEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECC
T ss_pred             CCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCC-cEEEEEE
Confidence            532   467999999997 556666 5999999999998 5666664

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.14  E-value=2.2e-05  Score=93.41  Aligned_cols=524  Identities=9%  Similarity=0.030  Sum_probs=265.6

Q ss_pred             CCEEEEEEccCCc-eeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCce-eEEecCCCcCEEEEecc
Q 001163          439 KHIVHLYTYHGGD-ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK-QYIFEGHESPVYSICPH  516 (1134)
Q Consensus       439 dg~v~iwd~~~~~-~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~  516 (1134)
                      ...|+..|+.... ...   .+...-.....++|++.+.. ++++-...+.|..+++..... ...+...-.....+++.
T Consensus        17 ~~~I~~i~~~~~~~~~~---~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD   92 (619)
T 3s94_A           17 RRDLRLVDATNGKENAT---IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACD   92 (619)
T ss_dssp             SSBEEEECCC------------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEE
T ss_pred             cccEEEEeCCCCcceEE---EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEE
Confidence            4557777776542 111   12223345789999997774 445555577899999765532 22333333567888886


Q ss_pred             ccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCC
Q 001163          517 HKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL  596 (1134)
Q Consensus       517 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~  596 (1134)
                      +.. +.++++-...+.|.+.+++.................+++.|.+..|+.....  ....|...++........... 
T Consensus        93 ~~~-~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g--~~~~I~r~~~dG~~~~~l~~~-  168 (619)
T 3s94_A           93 WLG-EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSSRFIIINS-  168 (619)
T ss_dssp             TTT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEEEECS-
T ss_pred             ecC-CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC--CCCEEEEEECCCCceEEEEeC-
Confidence            533 3567777778999999987654444433334456789999987666665322  134577777654333222222 


Q ss_pred             CCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCc
Q 001163          597 GKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGI  675 (1134)
Q Consensus       597 ~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~  675 (1134)
                      .-.....+++++++..|+.+. ..+.|...|++...........  ......+++..+ ..+.+-...+.|...|..++.
T Consensus       169 ~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~  245 (619)
T 3s94_A          169 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYTGE  245 (619)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSCC
T ss_pred             CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCCCc
Confidence            223578899999877777776 6678999998765443333211  223457777655 444555567788888887763


Q ss_pred             eeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceee
Q 001163          676 RLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWK  755 (1134)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~  755 (1134)
                      . ...+.........+                .  .+.+..+    |...-.+-...+           +++  .+.+-.
T Consensus       246 ~-~~~i~~~~~~p~~i----------------~--v~~~~~q----p~~~n~C~~~ng-----------~Cs--~lCl~~  289 (619)
T 3s94_A          246 G-LREIHSDIFSPMDI----------------H--AFSQQRQ----PNATNPCGIDNG-----------GCS--HLCLMS  289 (619)
T ss_dssp             C-CEECCSCCCCCSEE----------------E--ECCGGGS----CCCCCTTTTTGG-----------GCS--SEEEEC
T ss_pred             c-cEEEecCCCCCcEE----------------E--EEccccC----CCccccccCCCC-----------ccc--ceEECC
Confidence            2 22322211110000                0  0000000    000000000000           000  000000


Q ss_pred             ecccCCcccee---ccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcc
Q 001163          756 LTEITEPSQCR---SLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGIL  832 (1134)
Q Consensus       756 ~~~~~~~~~~~---~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  832 (1134)
                      ...  ....|.   .+.+..    ...+|.  .....+|+.+. .+.|+..++....                    ...
T Consensus       290 ~~~--~~~~C~C~~g~~l~~----d~~~C~--~~~~~~Ll~~~-~~~i~~i~l~~~~--------------------~~~  340 (619)
T 3s94_A          290 PVK--PFYQCACPTGVKLLE----NGKTCK--DGATELLLLAR-RTDLRRISLDTPD--------------------FTD  340 (619)
T ss_dssp             SST--TSEEEECCTTCCBCT----TSSCBC--SSCSEEEEEEE-SSCEEEEESSSTT--------------------CCC
T ss_pred             CCC--CCceEeCCchheecc----cCcccC--CCCceEEEEEc-ccceEEEecCCCc--------------------cce
Confidence            000  000000   000000    000000  01112233332 2344443333211                    001


Q ss_pred             cccCCCCCCCCCCeeEEEEcCCCCeEEEee--CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 001163          833 MTNDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQ  910 (1134)
Q Consensus       833 ~~~~~~~~~h~~~v~~v~~s~dg~~la~~s--dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~  910 (1134)
                      ....+.   .-..+.+++|++.+..|..++  .+.|+.+++........+.........+++.+.++++..+-+..+.|.
T Consensus       341 ~~~~~~---~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~  417 (619)
T 3s94_A          341 IVLQLE---DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIE  417 (619)
T ss_dssp             EECCCS---CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred             eEEecc---ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEE
Confidence            111111   234577899998766666665  578999998764443344433456778999874566666666678999


Q ss_pred             EEEcccceEEEeccCccCceEEEEEeeCCCEEEEEe--CCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCC
Q 001163          911 IYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSG--ADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLD  988 (1134)
Q Consensus       911 iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d  988 (1134)
                      +.++........+...-....+|++.|....|+.+.  ....|...+++.....   .+ . ....   .....++++++
T Consensus       418 v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~---~l-~-~~~l---~~P~GlalD~~  489 (619)
T 3s94_A          418 VTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRV---VL-V-NTSL---GWPNGLALDYD  489 (619)
T ss_dssp             EEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE---EE-E-CSSC---SCEEEEEEETT
T ss_pred             EEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccE---EE-E-eCCC---CCCeeeEEccc
Confidence            999875432222223345678999999744444433  2356777777653311   11 1 1111   34688999998


Q ss_pred             CCEEEEE--eeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEe-cCCcEEEeecCCCc
Q 001163          989 QTHLLAV--HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAF-EEGSVGVLTASTLR 1053 (1134)
Q Consensus       989 g~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s-~Dg~i~vwd~~~~~ 1053 (1134)
                      +..|..+  ..+.|..+++.... ...+.. ..-....++++..+  +|+.+. ..+.|...|..+|.
T Consensus       490 ~~~LY~aD~~~~~I~~~~~dG~~-~~~~~~-~~l~~P~glav~~~--~ly~tD~~~~~I~~~~k~~g~  553 (619)
T 3s94_A          490 EGKIYWGDAKTDKIEVMNTDGTG-RRVLVE-DKIPHIFGFTLLGD--YVYWTDWQRRSIERVHKRSAE  553 (619)
T ss_dssp             TTEEEEEETTTTEEEEEESSSCC-CEEEEE-CCCCSSCCEEEETT--EEEEECTTSSCEEEEESSSCC
T ss_pred             CCEEEEEECCCCEEEEEecCCCc-eEEEec-cCCCCcEEEEEECC--EEEEeecCCCeEEEEEcCCCc
Confidence            8888775  44678888886433 233221 11122234555433  555444 44677777777763

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.14  E-value=7.7e-09  Score=125.56  Aligned_cols=192  Identities=14%  Similarity=0.112  Sum_probs=126.4

Q ss_pred             EEEEcCCCCcEEEEEeCCCc-------------------EEEEEcccceEEEeccC--cc-------CceEEEEEeeCCC
Q 001163          889 FLAFHPQDNNIIAIGMEDSS-------------------IQIYNVRVDEVKTKLKG--HQ-------KRITGLAFSNTLN  940 (1134)
Q Consensus       889 ~l~~sp~~~~~la~g~~dg~-------------------i~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~~  940 (1134)
                      .++++| ++.+|++++.++.                   |..+|..+|+.+..++.  |.       .++.-.....+|+
T Consensus       239 ~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~  317 (689)
T 1yiq_A          239 SFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK  317 (689)
T ss_dssp             CEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             ceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence            578888 6778888888764                   99999999999877654  32       1222223334665


Q ss_pred             ---EEEEEeCCCcEEEEECCCCccccceeeee------------------------cCCC-------CCCCCCceEEEEc
Q 001163          941 ---VLVSSGADSQLCVWSTDGWEKQASKFLTI------------------------PNGR-------TASALADTRVQFH  986 (1134)
Q Consensus       941 ---~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~------------------------~~~~-------~~~~~~v~~l~fs  986 (1134)
                         .++.++.+|.++++|..+++..-...+..                        ..+.       ......-..++|+
T Consensus       318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d  397 (689)
T 1yiq_A          318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN  397 (689)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred             EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence               78899999999999999988541100000                        0000       0000112347899


Q ss_pred             CCCCEEEEE-e---------------------------------------------eceEEEEeCCCcccceeeccCCCc
Q 001163          987 LDQTHLLAV-H---------------------------------------------ETQIAIYEAPKLECLKQFVPREAS 1020 (1134)
Q Consensus       987 ~dg~~l~~~-~---------------------------------------------d~~i~iwd~~~~~~~~~~~~~~h~ 1020 (1134)
                      |+..++++. .                                             ++.|..||+.+++.+..+...   
T Consensus       398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~---  474 (689)
T 1yiq_A          398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV---  474 (689)
T ss_dssp             TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES---
T ss_pred             CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC---
Confidence            998888773 2                                             378999999999988776532   


Q ss_pred             cCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEec
Q 001163         1021 GPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLT 1092 (1134)
Q Consensus      1021 ~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~ 1092 (1134)
                      ..+....++..|.++++++.||.++.||..+|+.+.++....    +  ..-.++  .|..+..+|+++.+.
T Consensus       475 ~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~----~--~~~~p~--ty~~~G~qyv~~~~G  538 (689)
T 1yiq_A          475 TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAAS----G--VMAAPV--TYSVDGEQYVTFMAG  538 (689)
T ss_dssp             SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS----C--CCSCCE--EEEETTEEEEEEEEC
T ss_pred             CCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCC----C--cccCce--EEEECCEEEEEEEec
Confidence            233344667788899999999999999999999998776332    1  111244  455544446665544

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.13  E-value=2.9e-08  Score=109.20  Aligned_cols=224  Identities=14%  Similarity=0.076  Sum_probs=145.6

Q ss_pred             EEEEEEcCCCC-EEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCce
Q 001163          421 VNRVMWSPDGT-LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK  499 (1134)
Q Consensus       421 V~~l~~spd~~-~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~  499 (1134)
                      ..+.+|+|++. ++++...++.|..||..+++...    +. +...+.+++|+++|+  ++++. . ..|.+||..+++.
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~----~~-~~~~v~~i~~~~dg~--l~v~~-~-~gl~~~d~~~g~~  121 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV----HA-LPFMGSALAKISDSK--QLIAS-D-DGLFLRDTATGVL  121 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE----EE-CSSCEEEEEEEETTE--EEEEE-T-TEEEEEETTTCCE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE----EE-CCCcceEEEEeCCCe--EEEEE-C-CCEEEEECCCCcE
Confidence            45678999754 55666678899999998875321    22 346799999999998  45543 3 4599999988875


Q ss_pred             eEEecC----CCcCEEEEeccccCCccEEEEecCC----CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEec
Q 001163          500 QYIFEG----HESPVYSICPHHKENIQFIFSTATD----GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGT  571 (1134)
Q Consensus       500 ~~~~~~----h~~~v~~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  571 (1134)
                      ......    ....+..+++++  +|.++++...+    +...+|.++. .....+.........++|+||++.++.+..
T Consensus       122 ~~~~~~~~~~~~~~~~~i~~d~--~G~l~v~~~~~~~~~~~~~l~~~~~-g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~  198 (326)
T 2ghs_A          122 TLHAELESDLPGNRSNDGRMHP--SGALWIGTMGRKAETGAGSIYHVAK-GKVTKLFADISIPNSICFSPDGTTGYFVDT  198 (326)
T ss_dssp             EEEECSSTTCTTEEEEEEEECT--TSCEEEEEEETTCCTTCEEEEEEET-TEEEEEEEEESSEEEEEECTTSCEEEEEET
T ss_pred             EEEeeCCCCCCCCCCCCEEECC--CCCEEEEeCCCcCCCCceEEEEEeC-CcEEEeeCCCcccCCeEEcCCCCEEEEEEC
Confidence            433221    123577888754  55666554321    2334444442 222222222234678999999998876642


Q ss_pred             CCCCCeEEEEEeCC--CC-ee-----EEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCC
Q 001163          572 NKEGESYLVEWNES--EG-AV-----KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQ  643 (1134)
Q Consensus       572 ~~~~~~~i~~wd~~--~~-~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  643 (1134)
                         ....|.+||..  ++ ..     ...+.... .....+++.++|+..++...++.|.+||. +++.+..+..+  ..
T Consensus       199 ---~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~-~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~--~~  271 (326)
T 2ghs_A          199 ---KVNRLMRVPLDARTGLPTGKAEVFIDSTGIK-GGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP--GK  271 (326)
T ss_dssp             ---TTCEEEEEEBCTTTCCBSSCCEEEEECTTSS-SEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS--CS
T ss_pred             ---CCCEEEEEEcccccCCcccCceEEEECCCCC-CCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECC--CC
Confidence               23469999985  55 31     22222222 25678999999987777767789999998 67777777654  34


Q ss_pred             CcceEEEc-CCCcEEEEEECC
Q 001163          644 ASPCIRFN-KEGILLAVSTND  663 (1134)
Q Consensus       644 ~v~~v~~s-p~~~~l~~~~~d  663 (1134)
                      .+.+++|+ +++..|++++..
T Consensus       272 ~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          272 QTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             BEEEEEEESTTSCEEEEEEBC
T ss_pred             CcEEEEEecCCCCEEEEEecC
Confidence            68899998 888777665544

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.11  E-value=9.3e-08  Score=107.86  Aligned_cols=149  Identities=13%  Similarity=0.045  Sum_probs=98.8

Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEecCC---------CcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecC
Q 001163          479 SVVTCGEDRVIKVWDAVTGTKQYIFEGH---------ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA  549 (1134)
Q Consensus       479 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h---------~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~  549 (1134)
                      .++.++.++.|..+|..+|+.+..+...         ...+.+..   ..++..++.++.++.|..+|..+++.......
T Consensus        55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  131 (376)
T 3q7m_A           55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV---TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV  131 (376)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE---EEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc---eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence            5778888999999999999998776542         12232221   11225788888899999999998887776655


Q ss_pred             CCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCc----eEEEEEcCCCCEEEEEeCCCeEEEE
Q 001163          550 PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS----VGVVQFDTTKNRFLAAGDEFMIKFW  625 (1134)
Q Consensus       550 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg~i~iw  625 (1134)
                      ........... + ..+++++.    ++.|..+|..+|+.+..+.......    .......  +..++.++.++.|..+
T Consensus       132 ~~~~~~~p~~~-~-~~v~v~~~----~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~  203 (376)
T 3q7m_A          132 AGEALSRPVVS-D-GLVLIHTS----NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAV  203 (376)
T ss_dssp             SSCCCSCCEEE-T-TEEEEECT----TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEE
T ss_pred             CCceEcCCEEE-C-CEEEEEcC----CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEE
Confidence            43322222222 3 45555543    3469999999999888776543210    0112222  4578888889999999


Q ss_pred             EcCCCceeEEEec
Q 001163          626 DMDNVNLLASIDA  638 (1134)
Q Consensus       626 d~~~~~~~~~~~~  638 (1134)
                      |..+|+.+.....
T Consensus       204 d~~tG~~~w~~~~  216 (376)
T 3q7m_A          204 LMEQGQMIWQQRI  216 (376)
T ss_dssp             ETTTCCEEEEEEC
T ss_pred             ECCCCcEEEEEec
Confidence            9999998877653

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.08  E-value=2.6e-08  Score=108.57  Aligned_cols=233  Identities=14%  Similarity=0.097  Sum_probs=151.4

Q ss_pred             CCCCEEEEEEcCCCC-EEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECC
Q 001163          417 YTASVNRVMWSPDGT-LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV  495 (1134)
Q Consensus       417 h~~~V~~l~~spd~~-~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~  495 (1134)
                      ........+|+|+|+ +++++..++.|..|+. +++ ..   .+..+...+..++++++|+  ++++...++.|.+||..
T Consensus        43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~~~~  115 (305)
T 3dr2_A           43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRSDAD  115 (305)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEECTT
T ss_pred             CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEECCC
Confidence            445677899999998 5667777899999998 444 22   3445667799999999998  56655566889999975


Q ss_pred             CCceeEEec---CC-CcCEEEEeccccCCccEEEE----ecC-------------CCcEEEEecCCCCceeeecCCCCCe
Q 001163          496 TGTKQYIFE---GH-ESPVYSICPHHKENIQFIFS----TAT-------------DGKIKAWLYDNLGSRVDYDAPGHSS  554 (1134)
Q Consensus       496 ~~~~~~~~~---~h-~~~v~~~~~~~~~~~~~l~s----~s~-------------dg~i~vwd~~~~~~~~~~~~~~~~v  554 (1134)
                       ++......   +. ...+..+++.  ++|.++++    |..             .+.|..||..+++.....  .....
T Consensus       116 -g~~~~~~~~~~~~~~~~~~~i~~d--~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p  190 (305)
T 3dr2_A          116 -GQAHLLVGRYAGKRLNSPNDLIVA--RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHP  190 (305)
T ss_dssp             -SCEEEEECEETTEECSCCCCEEEC--TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSE
T ss_pred             -CCEEEEEeccCCCccCCCCCEEEC--CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCC
Confidence             65432221   11 1235567764  45677776    332             245666766554443332  33456


Q ss_pred             eEEEECcCCCEEEEEecCC--CCCeEEEEEeCCCCee--EEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 001163          555 TMMAYSADGARLFSCGTNK--EGESYLVEWNESEGAV--KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV  630 (1134)
Q Consensus       555 ~~~~~s~~~~~l~~~~~~~--~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  630 (1134)
                      ..++|+||++.|+.+....  .+...|++|++..+..  ...+..........+++.++|+..+ +..+ .|.+|+. .+
T Consensus       191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~-gv~~~~~-~g  267 (305)
T 3dr2_A          191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGT-GVCVFDS-DG  267 (305)
T ss_dssp             EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CCSS-EEEEECT-TS
T ss_pred             cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ecCC-cEEEECC-CC
Confidence            7899999999887765321  0124699999875531  1122111122455688999998444 4444 5999998 57


Q ss_pred             ceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEE
Q 001163          631 NLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIK  667 (1134)
Q Consensus       631 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~  667 (1134)
                      +.+..+....   .+.+++|+++++.|..++.++..+
T Consensus       268 ~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          268 QLLGHIPTPG---TASNCTFDQAQQRLFITGGPCLWM  301 (305)
T ss_dssp             CEEEEEECSS---CCCEEEECTTSCEEEEEETTEEEE
T ss_pred             CEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEEE
Confidence            7777776542   478999999998888888764333

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.03  E-value=2.4e-07  Score=104.47  Aligned_cols=224  Identities=8%  Similarity=0.018  Sum_probs=140.7

Q ss_pred             CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecC-------CCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeE
Q 001163          429 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAH-------VGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY  501 (1134)
Q Consensus       429 d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h-------~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~  501 (1134)
                      ++..|.+++.++.|..+|..+|+.+.... +...       ...+.+.-.. ++.  .++.++.++.|..+|..+|+.+.
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~-~~~~~~~~~~~~~~~~~~~~~-~~~--~v~v~~~~g~l~a~d~~tG~~~W  127 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVS-LAEKDGWFSKEPALLSGGVTV-SGG--HVYIGSEKAQVYALNTSDGTVAW  127 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEE-CCC---CCSCCCCCEEEEEEE-ETT--EEEEEETTSEEEEEETTTCCEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeec-CccccccccccCcccccCceE-eCC--EEEEEcCCCEEEEEECCCCCEEE
Confidence            46788888889999999999998765322 2111       2233322222 344  47788889999999999999987


Q ss_pred             EecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCe-----eEEEECcCCCEEEEEecCCCCC
Q 001163          502 IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSS-----TMMAYSADGARLFSCGTNKEGE  576 (1134)
Q Consensus       502 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~~~~~~~~~  576 (1134)
                      ..............  .  +..++.++.++.|..+|..+++............     ......  +..++.+..    +
T Consensus       128 ~~~~~~~~~~~p~~--~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~----~  197 (376)
T 3q7m_A          128 QTKVAGEALSRPVV--S--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGD----N  197 (376)
T ss_dssp             EEECSSCCCSCCEE--E--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCT----T
T ss_pred             EEeCCCceEcCCEE--E--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcC----C
Confidence            77644322111111  1  2478888889999999998888777655432211     122222  345555543    3


Q ss_pred             eEEEEEeCCCCeeEEEecCCCCCc---------e-EEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcc
Q 001163          577 SYLVEWNESEGAVKRTYHGLGKRS---------V-GVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASP  646 (1134)
Q Consensus       577 ~~i~~wd~~~~~~~~~~~~~~~~~---------v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  646 (1134)
                      +.+..+|..+|+.+..+.......         + .....  .+..++.++.++.+..+|..+++.+......    ...
T Consensus       198 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~----~~~  271 (376)
T 3q7m_A          198 GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQIMWKRELG----SVN  271 (376)
T ss_dssp             TEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCEEEEECCC----CEE
T ss_pred             CEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCCcEEeeccCC----CCC
Confidence            459999999999887765432100         0 01111  2467788888899999999999887665432    222


Q ss_pred             eEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163          647 CIRFNKEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       647 ~v~~sp~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      .+..  ++..+++++.++.+..+|..++
T Consensus       272 ~~~~--~~~~l~~~~~~g~l~~~d~~tG  297 (376)
T 3q7m_A          272 DFIV--DGNRIYLVDQNDRVMALTIDGG  297 (376)
T ss_dssp             EEEE--ETTEEEEEETTCCEEEEETTTC
T ss_pred             CceE--ECCEEEEEcCCCeEEEEECCCC
Confidence            3332  3556777777888888887666

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.03  E-value=1.5e-08  Score=112.18  Aligned_cols=177  Identities=8%  Similarity=0.060  Sum_probs=108.0

Q ss_pred             EEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec
Q 001163          469 LAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD  548 (1134)
Q Consensus       469 v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~  548 (1134)
                      .....++.   +..++.++.|..|| .+++.+..+......+.++..  ..++ .++.++.+  |..+|. +++....+.
T Consensus        25 ~~~d~~g~---l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~--~~~g-~l~v~t~~--l~~~d~-~g~~~~~~~   94 (330)
T 3hxj_A           25 PILAKNGT---IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSI--GKDG-TIYFGSDK--VYAINP-DGTEKWRFD   94 (330)
T ss_dssp             CEECTTSC---EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEE--TTTT-EECCSSCE--EEEECC-CGGGGGGSC
T ss_pred             ceEccCCe---EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEE--ecCC-cEEEecCc--EEEECC-CCcEEEEEE
Confidence            44545665   67777888999999 899887766544444455544  3343 46656655  888875 344333333


Q ss_pred             CCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 001163          549 APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMD  628 (1134)
Q Consensus       549 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  628 (1134)
                      ..........+.  +..+..++.    +..|..+|.. ++....+..... .+.++...+++. ++.++.++.|..+|..
T Consensus        95 ~~~~~~~~~~~~--~~~l~v~t~----~~~l~~~d~~-g~~~~~~~~~~~-~~~~~~~~~~g~-l~vgt~~~~l~~~d~~  165 (330)
T 3hxj_A           95 TKKAIVSDFTIF--EDILYVTSM----DGHLYAINTD-GTEKWRFKTKKA-IYATPIVSEDGT-IYVGSNDNYLYAINPD  165 (330)
T ss_dssp             C-----CCEEEE--TTEEEEECT----TSEEEEECTT-SCEEEEEECSSC-CCSCCEECTTSC-EEEECTTSEEEEECTT
T ss_pred             CCCCcccCceEE--CCEEEEEec----CCEEEEEcCC-CCEEEEEcCCCc-eeeeeEEcCCCE-EEEEcCCCEEEEECCC
Confidence            322222333333  444555543    2358999988 777666654433 455666766665 6667778999999998


Q ss_pred             CCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEE
Q 001163          629 NVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILA  670 (1134)
Q Consensus       629 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~  670 (1134)
                       ++.+......  ...+.++...+++.+.+. +  +.+..++
T Consensus       166 -g~~~~~~~~~--~~~~~~~~~d~~g~l~v~-t--~~l~~~d  201 (330)
T 3hxj_A          166 -GTEKWRFKTN--DAITSAASIGKDGTIYFG-S--DKVYAIN  201 (330)
T ss_dssp             -SCEEEEEECS--SCCCSCCEECTTCCEEEE-S--SSEEEEC
T ss_pred             -CCEeEEEecC--CCceeeeEEcCCCEEEEE-e--CEEEEEC
Confidence             7777666543  335666777777765543 3  6677666

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.03  E-value=5.1e-08  Score=107.11  Aligned_cols=233  Identities=13%  Similarity=0.102  Sum_probs=148.9

Q ss_pred             EEc--CCCCeEEEee--CCeEEEEEccCC----eEEEEecC-------CCCCeEEEEEcCCCCcEEEEEeCC------Cc
Q 001163          850 ALS--KNDSYVMSAS--GGKISLFNMMTF----KTMTTFMP-------PPPAATFLAFHPQDNNIIAIGMED------SS  908 (1134)
Q Consensus       850 ~~s--~dg~~la~~s--dg~i~lwd~~~~----~~~~~~~~-------~~~~v~~l~~sp~~~~~la~g~~d------g~  908 (1134)
                      .++  +++++|++.+  +++|.++|+.+.    +...++..       ....-..+.++| ++ ++++...+      |.
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~  165 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGG  165 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCE
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCe
Confidence            336  8889988877  688999999765    66666630       112456678889 77 66666555      78


Q ss_pred             EEEEEcccceEEEeccCccC---ceEEEEEeeCCCEEEEEe-------------------CCCcEEEEECCCCcccccee
Q 001163          909 IQIYNVRVDEVKTKLKGHQK---RITGLAFSNTLNVLVSSG-------------------ADSQLCVWSTDGWEKQASKF  966 (1134)
Q Consensus       909 i~iwd~~~~~~~~~l~~h~~---~V~~l~~s~d~~~l~s~s-------------------~Dg~i~iwd~~~~~~~~~~~  966 (1134)
                      |.++|..+++.+.++..-..   --..+.|+|+++.+++..                   .+.+|.+||+.+++...  .
T Consensus       166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~--t  243 (462)
T 2ece_A          166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH--S  243 (462)
T ss_dssp             EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE--E
T ss_pred             EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee--E
Confidence            99999999999988873322   234588899999999884                   36889999999854222  2


Q ss_pred             eeecCCCCCCCCCceEEEE--cCCCCEEEEE-------eeceEEEEeCCCcccceeec--cCC----------------C
Q 001163          967 LTIPNGRTASALADTRVQF--HLDQTHLLAV-------HETQIAIYEAPKLECLKQFV--PRE----------------A 1019 (1134)
Q Consensus       967 ~~~~~~~~~~~~~v~~l~f--s~dg~~l~~~-------~d~~i~iwd~~~~~~~~~~~--~~~----------------h 1019 (1134)
                      +.+..  ..  .....+.|  +|+|+++.++       .+++|.+|..+.++......  ...                -
T Consensus       244 I~vg~--~g--~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~  319 (462)
T 2ece_A          244 LTLGE--EN--RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV  319 (462)
T ss_dssp             EESCT--TE--EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred             EecCC--CC--CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence            33321  10  22455555  9999998884       34678776654432111100  000                0


Q ss_pred             ccCEEEEEEccCCCEEEEEec-CCcEEEeecCCC---cceeecCCCccc-----CCCCCCCceeEEEEecCCCCCEEEEE
Q 001163         1020 SGPITHATYSCDSQSIYVAFE-EGSVGVLTASTL---RLRCRINPTAYL-----PTNPSLRVYPLVIAGNPTDPNQFALG 1090 (1134)
Q Consensus      1020 ~~~v~~~~~s~dg~~l~s~s~-Dg~i~vwd~~~~---~~~~~~~~~~~~-----~~~h~~~v~~~~~~~~p~~~~~l~s~ 1090 (1134)
                      ......|.+|+||++|+++.. .+.|.+||+...   +++..+.....+     +.|......+-.+.++| |+++|+++
T Consensus       320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVa  398 (462)
T 2ece_A          320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVT  398 (462)
T ss_dssp             CCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEE
T ss_pred             CCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEE
Confidence            135788999999999987776 589999998632   334333322100     00111111345567889 78888888


Q ss_pred             e
Q 001163         1091 L 1091 (1134)
Q Consensus      1091 ~ 1091 (1134)
                      .
T Consensus       399 N  399 (462)
T 2ece_A          399 N  399 (462)
T ss_dssp             C
T ss_pred             c
Confidence            8

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.98  E-value=2.4e-07  Score=101.74  Aligned_cols=266  Identities=14%  Similarity=0.145  Sum_probs=165.8

Q ss_pred             CcccccCCC---CCceeEEEee--c-CCCeeEEEE-----------c--CCCCeEEEEEeCCCcEEEEecCCccceeeec
Q 001163          336 GQSSYSTDD---LPKTVVMTLN--Q-GSAVKSMDF-----------H--PVQQILLVVGTNMGDVMLWEVGSRERIAVKS  396 (1134)
Q Consensus       336 ~l~~~~~d~---~~~~~~~~~~--h-~~~V~~v~f-----------s--p~g~~lla~gs~dg~v~iwd~~~~~~~~~~~  396 (1134)
                      +|++...|.   ...+.++.+.  + ......+.|           +  +++++|++.|..++.|.|+|+.+..... +-
T Consensus        44 ~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p-~~  122 (462)
T 2ece_A           44 FIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREP-KI  122 (462)
T ss_dssp             EEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSC-EE
T ss_pred             eEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCc-ee
Confidence            366665553   2356666654  2 224444445           7  8999999999999999999997542110 00


Q ss_pred             eeeeeccccCccccccccccC-CCCEEEEEEcCCCCEEEEEeCC------CEEEEEEccCCceeeeeeeeecCCC-CEEE
Q 001163          397 FKVWELGACSMPLQASLSSDY-TASVNRVMWSPDGTLFGVAYSK------HIVHLYTYHGGDELRNHLEIEAHVG-SVND  468 (1134)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~spd~~~las~s~d------g~v~iwd~~~~~~~~~~~~l~~h~~-~V~~  468 (1134)
                      .++.+        ...+.... ...-..+..+|+| +++++..+      |.|.+.|..+++.+.... ..+... --..
T Consensus       123 ~k~ie--------~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~-~~~~~~~~~Yd  192 (462)
T 2ece_A          123 IKVIE--------PEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWE-IDRGDQYLAYD  192 (462)
T ss_dssp             EEEEC--------HHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECC-SBCTTCCCCCC
T ss_pred             eeeec--------hhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEc-cCCCCccccce
Confidence            01110        00001011 1245667889999 77776555      789999999988766332 222222 2345


Q ss_pred             EEEecCCCceEEEEEe-------------------CCCeEEEEECCCCceeEEecCC--CcCEEEEeccccCCccEEEEe
Q 001163          469 LAFSYPNKQLSVVTCG-------------------EDRVIKVWDAVTGTKQYIFEGH--ESPVYSICPHHKENIQFIFST  527 (1134)
Q Consensus       469 v~~s~~~~~~~l~s~s-------------------~d~~i~iwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~  527 (1134)
                      +.|+|+++  .+++..                   .+.+|.+||+.+++.+.++.--  ......+.|..++++.+++.+
T Consensus       193 ~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~  270 (462)
T 2ece_A          193 FWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFIN  270 (462)
T ss_dssp             EEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEE
T ss_pred             EEECCCCC--EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEE
Confidence            88899999  677764                   4689999999999888877642  123445666556677777666


Q ss_pred             c------CCCcEEEEecCCCCce--ee--ecC-------C---------CCCeeEEEECcCCCEEEEEecCCCCCeEEEE
Q 001163          528 A------TDGKIKAWLYDNLGSR--VD--YDA-------P---------GHSSTMMAYSADGARLFSCGTNKEGESYLVE  581 (1134)
Q Consensus       528 s------~dg~i~vwd~~~~~~~--~~--~~~-------~---------~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~  581 (1134)
                      +      .+++|.+|..+.+...  ..  +..       .         ......+.+|+||++|+++...   ...|.+
T Consensus       271 ~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg---~d~Vav  347 (462)
T 2ece_A          271 MVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWG---IGEVRQ  347 (462)
T ss_dssp             EEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETT---TTEEEE
T ss_pred             EeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCC---CCEEEE
Confidence            5      5668877665432110  00  000       0         2356789999999999988653   446999


Q ss_pred             EeCCC---CeeEEEecCCCC-------------CceEEEEEcCCCCEEEEEe
Q 001163          582 WNESE---GAVKRTYHGLGK-------------RSVGVVQFDTTKNRFLAAG  617 (1134)
Q Consensus       582 wd~~~---~~~~~~~~~~~~-------------~~v~~~~~~~~~~~l~~~~  617 (1134)
                      +|+..   .+.+..+.....             .....+.++|||++|+++.
T Consensus       348 fdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          348 YDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            99852   355555543210             0246789999999999886

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.98  E-value=1.9e-08  Score=111.32  Aligned_cols=259  Identities=11%  Similarity=0.062  Sum_probs=165.8

Q ss_pred             EEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCC
Q 001163          361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKH  440 (1134)
Q Consensus       361 ~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg  440 (1134)
                      ++.+..+|.  +..|+.++.|..|| .+++.+..                   ...+...+.++...++|.+.+ ++.+ 
T Consensus        24 ~~~~d~~g~--l~v~t~~~~l~~~d-~~g~~~~~-------------------~~~~~~~~~~~~~~~~g~l~v-~t~~-   79 (330)
T 3hxj_A           24 SPILAKNGT--IYLGSSNKNLYAIN-TDGSVKWF-------------------FKSGEIIECRPSIGKDGTIYF-GSDK-   79 (330)
T ss_dssp             CCEECTTSC--EECSSTTTTTEEEC-TTSCEEES-------------------SCGGGEEEECCEETTTTEECC-SSCE-
T ss_pred             CceEccCCe--EEEEcCCCEEEEEC-CCCcEEEE-------------------EecCCCcccceEEecCCcEEE-ecCc-
Confidence            445556676  35677888999999 77775432                   112334567777777776444 4444 


Q ss_pred             EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCC
Q 001163          441 IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKEN  520 (1134)
Q Consensus       441 ~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~  520 (1134)
                       |..+|. +++.+..   +...........+. ++   .+..++.++.|..+|.. ++.+.....+...+.++..  ..+
T Consensus        80 -l~~~d~-~g~~~~~---~~~~~~~~~~~~~~-~~---~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~--~~~  147 (330)
T 3hxj_A           80 -VYAINP-DGTEKWR---FDTKKAIVSDFTIF-ED---ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIV--SED  147 (330)
T ss_dssp             -EEEECC-CGGGGGG---SCC-----CCEEEE-TT---EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE--CTT
T ss_pred             -EEEECC-CCcEEEE---EECCCCcccCceEE-CC---EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEE--cCC
Confidence             888886 5554432   22222222333333 44   47778889999999988 8877776655544444444  334


Q ss_pred             ccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCc
Q 001163          521 IQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS  600 (1134)
Q Consensus       521 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~  600 (1134)
                      + .++.++.++.|..+|.. +............+.++...+++...+..  .     .|..+| .+++....+..... .
T Consensus       148 g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~-----~l~~~d-~~g~~~~~~~~~~~-~  216 (330)
T 3hxj_A          148 G-TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS--D-----KVYAIN-PDGTEKWNFYAGYW-T  216 (330)
T ss_dssp             S-CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES--S-----SEEEEC-TTSCEEEEECCSSC-C
T ss_pred             C-EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe--C-----EEEEEC-CCCcEEEEEccCCc-c
Confidence            3 46678888999999988 66655665555567778888888766554  2     299999 77777766665433 5


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEc
Q 001163          601 VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN  671 (1134)
Q Consensus       601 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~  671 (1134)
                      +.++...+++ .+..++.++.|..+|. +++.+..+...  ...+..+.+.+++ .|.+++.+|.+..++.
T Consensus       217 ~~~~~~~~~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~--~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~  282 (330)
T 3hxj_A          217 VTRPAISEDG-TIYVTSLDGHLYAINP-DGTEKWRFKTG--KRIESSPVIGNTD-TIYFGSYDGHLYAINP  282 (330)
T ss_dssp             CSCCEECTTS-CEEEEETTTEEEEECT-TSCEEEEEECS--SCCCSCCEECTTS-CEEEECTTCEEEEECT
T ss_pred             eeceEECCCC-eEEEEcCCCeEEEECC-CCCEeEEeeCC--CCccccceEcCCC-eEEEecCCCCEEEECC
Confidence            7777888776 4566677788888874 56666665543  2234455666555 4566778888888885

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.97  E-value=0.00011  Score=87.48  Aligned_cols=209  Identities=10%  Similarity=-0.006  Sum_probs=118.4

Q ss_pred             ecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001163          354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF  433 (1134)
Q Consensus       354 ~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l  433 (1134)
                      ..-..+.+++|++.+.+++.+-...+.|..++++.......                  ++...-.....+++.+.+..|
T Consensus        37 ~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~------------------v~~~~~~~P~GlAvD~~~~~l   98 (619)
T 3s94_A           37 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------VVVSGLLSPDGLACDWLGEKL   98 (619)
T ss_dssp             BCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE------------------EECSSCSCEEEEEEETTTTEE
T ss_pred             cCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE------------------EEeCCCCCcCeEEEEecCCEE
Confidence            34567889999998877777766678888888875521110                  012222478899999965555


Q ss_pred             E-EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEE-eCCCeEEEEECCCCceeEEecCCCcCEE
Q 001163          434 G-VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTC-GEDRVIKVWDAVTGTKQYIFEGHESPVY  511 (1134)
Q Consensus       434 a-s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~h~~~v~  511 (1134)
                      . +-...+.|.+.++.+... +.  .+...-.....|++.|.+.. +++|- +..+.|...++............-....
T Consensus        99 y~~d~~~~~I~v~~~dG~~~-~~--l~~~~l~~P~~Iavdp~~g~-ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~  174 (619)
T 3s94_A           99 YWTDSETNRIEVSNLDGSLR-KV--LFWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPN  174 (619)
T ss_dssp             EEEETTTTEEEEEETTSCSC-EE--EECSSCSCCCCEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEEEECSSCSSEE
T ss_pred             EEEeCCCCEEEEEECCCCCE-EE--EEeCCCCCCceEEEecCCCe-EEEeccCCCCEEEEEECCCCceEEEEeCCCCCCc
Confidence            4 455678999999986532 21  12233445778999997664 33333 2346777777543322222223344567


Q ss_pred             EEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeE
Q 001163          512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK  590 (1134)
Q Consensus       512 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~  590 (1134)
                      .+++++.. +.+.++-...+.|...|++.................+++..+  .++..-.   ....|...|..+++..
T Consensus       175 Glald~~~-~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~---~~~~V~~~d~~tg~~~  247 (619)
T 3s94_A          175 GLTLDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDW---STHSILACNKYTGEGL  247 (619)
T ss_dssp             EEEEETTT-TEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECT---TTCSEEEEESSSCCCC
T ss_pred             EEEEEccC-CEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecC---CCCEEEEEECCCCccc
Confidence            88886543 355566666788888888653333222212222346666554  4544432   2334777777666543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.96  E-value=6e-08  Score=110.52  Aligned_cols=272  Identities=14%  Similarity=0.094  Sum_probs=172.2

Q ss_pred             cCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEE-c-CCCCEEEEEe------------------CCC
Q 001163          561 ADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQF-D-TTKNRFLAAG------------------DEF  620 (1134)
Q Consensus       561 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~~------------------~dg  620 (1134)
                      +||++++.+..+   ...|.+.|+.+.++...+.-........+++ . |+++++++++                  .++
T Consensus        99 ~DG~~lfVnd~~---~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~  175 (595)
T 1fwx_A           99 YDGRFLFMNDKA---NTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN  175 (595)
T ss_dssp             EEEEEEEEEETT---TTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred             cCCCEEEEEcCC---CCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence            389999886533   4569999999999888665443335778887 5 9999999985                  345


Q ss_pred             eEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcE-EEEEccCCceeEEEeccCcccccccchhhhhcc
Q 001163          621 MIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGI-KILANADGIRLLRTVESRTFDASRVASAAIVKA  699 (1134)
Q Consensus       621 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i-~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  699 (1134)
                      .+.+.|.++.+.+.++...+   ....++++|+|+++++.+.+..- ...+..+.                         
T Consensus       176 ~vtvID~~t~~v~~qI~Vgg---~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~-------------------------  227 (595)
T 1fwx_A          176 VFTAVDADKWEVAWQVLVSG---NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTA-------------------------  227 (595)
T ss_dssp             EEEEEETTTTEEEEEEEESS---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTC-------------------------
T ss_pred             eEEEEECCCCeEEEEEEeCC---CccceEECCCCCEEEEEecCcccCcchhhccc-------------------------
Confidence            79999999999998887643   24678899999999998866321 00000000                         


Q ss_pred             cccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccE
Q 001163          700 PAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRV  779 (1134)
Q Consensus       700 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i  779 (1134)
                                                                    ..-..+.+.+.....                   
T Consensus       228 ----------------------------------------------~~~d~v~V~~~~~~~-------------------  242 (595)
T 1fwx_A          228 ----------------------------------------------AEMDHIVVFNIAEIE-------------------  242 (595)
T ss_dssp             ----------------------------------------------CSEEEEEEEEHHHHH-------------------
T ss_pred             ----------------------------------------------cccceEEEeecccee-------------------
Confidence                                                          000122222221100                   


Q ss_pred             EEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEE
Q 001163          780 SRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVM  859 (1134)
Q Consensus       780 ~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la  859 (1134)
                         .+.++|+....    +.+.|.|....+                    +......++   -.....++.++|||++++
T Consensus       243 ---~~v~~Gk~~~i----~~V~VID~~~~~--------------------~~~~~~~Ip---vg~~PhGv~~sPDGk~v~  292 (595)
T 1fwx_A          243 ---KAIAAGDYQEL----NGVKVVDGRKEA--------------------SSLFTRYIP---IANNPHGCNMAPDKKHLC  292 (595)
T ss_dssp             ---HHHHHTCSEEE----TTEEEEECSGGG--------------------CCSSEEEEE---EESSCCCEEECTTSSEEE
T ss_pred             ---EeccCCCeeEE----CcEEEEeCcccC--------------------CceeEEEEe---cCCCceEEEEcCCCCEEE
Confidence               01223332222    225454432100                    211100111   123456899999999999


Q ss_pred             Eee--CCeEEEEEccCCe------------EEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEccc---------
Q 001163          860 SAS--GGKISLFNMMTFK------------TMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV---------  916 (1134)
Q Consensus       860 ~~s--dg~i~lwd~~~~~------------~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~---------  916 (1134)
                      +++  +++|.++|+.+.+            ...++. -......++|+| +|...++..-|++|.+||+.+         
T Consensus       293 V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~  370 (595)
T 1fwx_A          293 VAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEK  370 (595)
T ss_dssp             EECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCS
T ss_pred             EeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccc
Confidence            887  6889999998753            333333 345688999999 776666777899999999987         


Q ss_pred             -ceEEEeccCccCce-----EEEEEeeCCCEEEEEeC---CCc----------EEEEECCCCc
Q 001163          917 -DEVKTKLKGHQKRI-----TGLAFSNTLNVLVSSGA---DSQ----------LCVWSTDGWE  960 (1134)
Q Consensus       917 -~~~~~~l~~h~~~V-----~~l~~s~d~~~l~s~s~---Dg~----------i~iwd~~~~~  960 (1134)
                       .+.+.++..|..+-     .++.++|||++|+++..   |+-          -.++|+.+++
T Consensus       371 ~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          371 VDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             CCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             cceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence             56677777665432     22355799999998753   442          2788997655

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.92  E-value=3.4e-10  Score=126.85  Aligned_cols=186  Identities=15%  Similarity=0.041  Sum_probs=111.5

Q ss_pred             CCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCc-eE
Q 001163          854 NDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKR-IT  931 (1134)
Q Consensus       854 dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~-V~  931 (1134)
                      ++..+++++ |+.|+.||..+|+.+..+..  +.+.+..+.. ++.++++++.||.|+.||..+|+.+..+..+... +.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~   84 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ   84 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence            456777777 89999999999999999876  5555555666 6778888889999999999999887666544221 11


Q ss_pred             -EEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCcc
Q 001163          932 -GLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLE 1009 (1134)
Q Consensus       932 -~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~~ 1009 (1134)
                       +..+. ++..+++++.|+.|+.||..+|+..-     ....+.       ...++|++..+++ +.++.|+.||..+|+
T Consensus        85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w-----~~~~~~-------~~~~~p~~~~v~~~~~dg~v~a~d~~tG~  151 (369)
T 2hz6_A           85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQ-----TLSSAF-------ADSLSPSTSLLYLGRTEYTITMYDTKTRE  151 (369)
T ss_dssp             TCSCC------CCCCEEEEEEEEECCC----------------------------------EEEEEEEEEEECCCSSSSS
T ss_pred             cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEE-----EecCCC-------cccccccCCEEEEEecCCEEEEEECCCCC
Confidence             11111 34577888889999999999877431     111111       1345667777777 578999999999999


Q ss_pred             cceeeccCCCccCEEEEEEccCC---CEEEEEecCCcEEEeecCCCcceeecC
Q 001163         1010 CLKQFVPREASGPITHATYSCDS---QSIYVAFEEGSVGVLTASTLRLRCRIN 1059 (1134)
Q Consensus      1010 ~~~~~~~~~h~~~v~~~~~s~dg---~~l~s~s~Dg~i~vwd~~~~~~~~~~~ 1059 (1134)
                      .+..+...    .....+++.+.   ..+++++.||.|+.||..+|+.+.+..
T Consensus       152 ~~W~~~~~----~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          152 LRWNATYF----DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             CCCEEEEE----EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             EEEeEecc----cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence            87665421    12233444432   557778899999999999999877654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.91  E-value=4.4e-08  Score=111.61  Aligned_cols=238  Identities=9%  Similarity=0.034  Sum_probs=159.4

Q ss_pred             CCCCeEEEee--CCeEEEEEccCCeEEEEecCC-CCCeEEEEE-c-CCCCcEEEEEe------------------CCCcE
Q 001163          853 KNDSYVMSAS--GGKISLFNMMTFKTMTTFMPP-PPAATFLAF-H-PQDNNIIAIGM------------------EDSSI  909 (1134)
Q Consensus       853 ~dg~~la~~s--dg~i~lwd~~~~~~~~~~~~~-~~~v~~l~~-s-p~~~~~la~g~------------------~dg~i  909 (1134)
                      +||+++.+..  ++.|.+.|+.+.++...+.-. ......+++ + | +++++++++                  .++.+
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v  177 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  177 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceE
Confidence            4899988887  467999999999988865433 356888898 5 8 788888874                  34589


Q ss_pred             EEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCC--------------------------------------cE
Q 001163          910 QIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADS--------------------------------------QL  951 (1134)
Q Consensus       910 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg--------------------------------------~i  951 (1134)
                      .+.|..+.+.+.++.--. .-..++++|||+++++++.+.                                      .|
T Consensus       178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V  256 (595)
T 1fwx_A          178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  256 (595)
T ss_dssp             EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence            999999998887766322 346678999999999988654                                      35


Q ss_pred             EEEECCCCcccc-ceeeeecCCCCCCCCCceEEEEcCCCCEEEEE--eeceEEEEeCCCcc------------cceeecc
Q 001163          952 CVWSTDGWEKQA-SKFLTIPNGRTASALADTRVQFHLDQTHLLAV--HETQIAIYEAPKLE------------CLKQFVP 1016 (1134)
Q Consensus       952 ~iwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~i~iwd~~~~~------------~~~~~~~ 1016 (1134)
                      .+.|..+.+... ...+...       ....++.++|||++++++  .+.+|.++|+.+.+            .......
T Consensus       257 ~VID~~~~~~~~~~~~Ipvg-------~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v  329 (595)
T 1fwx_A          257 KVVDGRKEASSLFTRYIPIA-------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL  329 (595)
T ss_dssp             EEEECSGGGCCSSEEEEEEE-------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC
T ss_pred             EEEeCcccCCceeEEEEecC-------CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC
Confidence            566655521001 1122222       135679999999999995  67899999999763            2223321


Q ss_pred             CCCccCEEEEEEccCCCEEEEEecCCcEEEeecCC----------CcceeecCCCcccCCCCCCCceeEEEEecCCCCCE
Q 001163         1017 REASGPITHATYSCDSQSIYVAFEEGSVGVLTAST----------LRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQ 1086 (1134)
Q Consensus      1017 ~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~----------~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~ 1086 (1134)
                         ......++|++||...++.-.|++|.+||+++          ...+.++... +.| ||..  .++.+..+| ||++
T Consensus       330 ---G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~-yqp-Gh~~--~~~g~t~~~-DGk~  401 (595)
T 1fwx_A          330 ---GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH-YQP-GHLK--TVMGETLDA-TNDW  401 (595)
T ss_dssp             ---CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS-SCE-EEEE--ETTTTSTTC-CSSE
T ss_pred             ---CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc-ccc-ccce--eccceEeCC-CCCE
Confidence               45789999999994345666789999999987          3333333321 111 2111  112224567 7888


Q ss_pred             EEEEec---CCc----------EEEEeCCCCCCC
Q 001163         1087 FALGLT---DGG----------VYIIEPLEAEGR 1107 (1134)
Q Consensus      1087 l~s~~~---Dg~----------v~vW~~~~~~~~ 1107 (1134)
                      |+++..   |.-          -.++|++..+++
T Consensus       402 l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~  435 (595)
T 1fwx_A          402 LVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMV  435 (595)
T ss_dssp             EEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCE
T ss_pred             EEEcCCCCccccccCCCCCCCcceEEEcCCCcEE
Confidence            888654   432          188999766654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.89  E-value=1.2e-09  Score=122.46  Aligned_cols=190  Identities=7%  Similarity=-0.035  Sum_probs=111.2

Q ss_pred             CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCc
Q 001163          429 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES  508 (1134)
Q Consensus       429 d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~  508 (1134)
                      ++..|++++.||.|+.||..+|+.+..   +..  +.+.+..+..++.  .+++++.|+.|+.||..+|+.+..+..+..
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~---~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~   80 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWT---LKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP   80 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEE---EEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEE---ecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence            678999999999999999999997763   333  4455555667776  577788999999999999998877754422


Q ss_pred             CEEEEeccccC-CccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC
Q 001163          509 PVYSICPHHKE-NIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG  587 (1134)
Q Consensus       509 ~v~~~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~  587 (1134)
                      ...  ...+.- ++..+++++.|+.|+.||..+++....+..+.    ...++|++..+++++.    ++.|+.||..+|
T Consensus        81 ~~~--~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG  150 (369)
T 2hz6_A           81 ELV--QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTR  150 (369)
T ss_dssp             HHH--TTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSS
T ss_pred             ccc--ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCC
Confidence            110  111111 23578888899999999999888777665433    2345678888888765    346999999999


Q ss_pred             eeEEEecCCCCCceEEEEEcCCC---CEEEEEeCCCeEEEEEcCCCceeEEEec
Q 001163          588 AVKRTYHGLGKRSVGVVQFDTTK---NRFLAAGDEFMIKFWDMDNVNLLASIDA  638 (1134)
Q Consensus       588 ~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~  638 (1134)
                      +.+..+....   .....+..+.   ..+++++.+|.|+.||..+|+.+.....
T Consensus       151 ~~~W~~~~~~---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~  201 (369)
T 2hz6_A          151 ELRWNATYFD---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY  201 (369)
T ss_dssp             SCCCEEEEEE---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred             CEEEeEeccc---ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence            8766554221   1122333332   5677888999999999999998877663

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.89  E-value=0.00085  Score=85.25  Aligned_cols=574  Identities=10%  Similarity=0.062  Sum_probs=281.9

Q ss_pred             EEEEEEcCCCCEEEEEeCCCEEEEEEccCCce-----eeeeeeeecCCCCEEEEEEecCC---CceEEEEEe---CCCeE
Q 001163          421 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDE-----LRNHLEIEAHVGSVNDLAFSYPN---KQLSVVTCG---EDRVI  489 (1134)
Q Consensus       421 V~~l~~spd~~~las~s~dg~v~iwd~~~~~~-----~~~~~~l~~h~~~V~~v~~s~~~---~~~~l~s~s---~d~~i  489 (1134)
                      -.++++-.+| +|+.||..|.=.+|.+.....     +....++ ..-++|..++.....   .. .|++++   .+|++
T Consensus       329 ~ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~-~N~~PI~D~~v~d~~~~~~~-~i~~~sG~g~~gsL  405 (1158)
T 3ei3_A          329 AECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETF-TNLGPIVDMCVVDLERQGQG-QLVTCSGAFKEGSL  405 (1158)
T ss_dssp             CSEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEEEE-CCCCSEEEEEEECTTSSSCC-EEEEEECCGGGCEE
T ss_pred             ccEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEeee-cCcCCceeEEEEccCCCCCC-eEEEEECcCCCCeE
Confidence            3566666555 888888877767777654321     1212222 244788888876422   21 344443   46788


Q ss_pred             EEEECCCC-ceeE--EecCCCcCEEEEeccc-cCCccEEEEecCCCcEEEEecCCCCceeeecCCC--CCeeEEEECc-C
Q 001163          490 KVWDAVTG-TKQY--IFEGHESPVYSICPHH-KENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG--HSSTMMAYSA-D  562 (1134)
Q Consensus       490 ~iwd~~~~-~~~~--~~~~h~~~v~~~~~~~-~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--~~v~~~~~s~-~  562 (1134)
                      ++..--=+ +.+.  .+.+ -..++.+.... +....+|+.+..+.+ +++.+... ........+  .....++... .
T Consensus       406 ~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e-~veev~~~gf~~~~~TL~~~~l~  482 (1158)
T 3ei3_A          406 RIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGE-EVEETELMGFVDDQQTFFCGNVA  482 (1158)
T ss_dssp             EEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETT-EEEEECCTTCCSSSCEEEEEEET
T ss_pred             EEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCC-cccccccccccCCCCcEEEEEcC
Confidence            88752111 1111  2232 24556554321 122357777666666 45554321 122221111  1111222111 1


Q ss_pred             CCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCC
Q 001163          563 GARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGL  642 (1134)
Q Consensus       563 ~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  642 (1134)
                      +..++-....     .|++.+...+..+..+....+..|...+.+.  ..++.++ ++.+.++.++.+++..... ..-.
T Consensus       483 ~~~ivQVt~~-----~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~-~~l~  553 (1158)
T 3ei3_A          483 HQQLIQITSA-----SVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISH-TEME  553 (1158)
T ss_dssp             TTEEEEEESS-----CEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEE-EECS
T ss_pred             CCeEEEEecC-----EEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecc-cCCC
Confidence            2344444432     2788887766677777655544566666553  4666665 6788888887664332221 1224


Q ss_pred             CCcceEEEcCC------CcEEEEEEC-CCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccC
Q 001163          643 QASPCIRFNKE------GILLAVSTN-DNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTS  715 (1134)
Q Consensus       643 ~~v~~v~~sp~------~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  715 (1134)
                      ..|.|+++.|.      +.++++|.. |++++|+++.+.......-.+......                          
T Consensus       554 ~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~--------------------------  607 (1158)
T 3ei3_A          554 HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPR--------------------------  607 (1158)
T ss_dssp             SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEE--------------------------
T ss_pred             CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCc--------------------------
Confidence            57899999863      479999996 999999999865322111110000000                          


Q ss_pred             cCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCc-cceeccccCCccccccEEEEEEecCCceeeee
Q 001163          716 LGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEP-SQCRSLRLPDNLTAMRVSRLIYTNSGLAILAL  794 (1134)
Q Consensus       716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~  794 (1134)
                             ...+..+       ....++..+-.||.+..+.++..... ...+...+   | ..++.=..|...|..-+.+
T Consensus       608 -------si~l~~~-------~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~L---G-~~pv~L~~~~~~~~~~V~a  669 (1158)
T 3ei3_A          608 -------SILMTTF-------ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTL---G-TQPTVLRTFRSLSTTNVFA  669 (1158)
T ss_dssp             -------EEEEEEE-------TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEEC---C-SSCCEEEEEESSSCEEEEE
T ss_pred             -------EEEEEEe-------CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEc---C-CCceEEEEEeeCCceeEEE
Confidence                   0000011       01244566666676655555421110 00111111   0 1222222233333322222


Q ss_pred             ccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCee-EEEEcCC--CCeEEEeeCCeEEEEEc
Q 001163          795 ASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVP-CFALSKN--DSYVMSASGGKISLFNM  871 (1134)
Q Consensus       795 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~-~v~~s~d--g~~la~~sdg~i~lwd~  871 (1134)
                      ..+.-..+|.-+                       +......+.    ...+. ...|+..  ..-++..+++.++|..+
T Consensus       670 ~s~rp~liy~~~-----------------------~~l~~s~l~----~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~i  722 (1158)
T 3ei3_A          670 CSDRPTVIYSSN-----------------------HKLVFSNVN----LKEVNYMCPLNSDGYPDSLALANNSTLTIGTI  722 (1158)
T ss_dssp             ESSSCEEEEESS-----------------------SSEEEEEBS----SSCCCEEEEECCSSSTTEEEEECSSCEEEEEE
T ss_pred             ECCCCEEEEEcC-----------------------CceEEeccC----hHHhceEeccCcccCCCcEEEEcCCceEEEEe
Confidence            223333333111                       111111111    11222 2334332  12344455666888776


Q ss_pred             cCCe--EEEEecCCCCCeEEEEEcCCCCcEEEEEeCC-------------------------------------------
Q 001163          872 MTFK--TMTTFMPPPPAATFLAFHPQDNNIIAIGMED-------------------------------------------  906 (1134)
Q Consensus       872 ~~~~--~~~~~~~~~~~v~~l~~sp~~~~~la~g~~d-------------------------------------------  906 (1134)
                      ++.+  .++++. -...+..++++| ..+.++++..+                                           
T Consensus       723 ~~~~~~~~~~ip-L~~Tprri~y~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  800 (1158)
T 3ei3_A          723 DEIQKLHIRTVP-LYESPRKICYQE-VSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSF  800 (1158)
T ss_dssp             CCSSSEEEEEEE-CSSEEEEEEEEG-GGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------C
T ss_pred             cccCCeeEEEEe-CCCCceEEEEcC-CCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhc
Confidence            5432  223332 335678888888 55544443311                                           


Q ss_pred             ------CcEEEEEcccceEEEeccCc-cCceEEEE---EeeC-CCEEEEEe----------CCCcEEEEECCCCccccce
Q 001163          907 ------SSIQIYNVRVDEVKTKLKGH-QKRITGLA---FSNT-LNVLVSSG----------ADSQLCVWSTDGWEKQASK  965 (1134)
Q Consensus       907 ------g~i~iwd~~~~~~~~~l~~h-~~~V~~l~---~s~d-~~~l~s~s----------~Dg~i~iwd~~~~~~~~~~  965 (1134)
                            ..|++.|..+.+.+..+.-. ...+.+++   |..+ ..+++.|.          ..|.|.++++..++.....
T Consensus       801 g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~  880 (1158)
T 3ei3_A          801 GEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVA  880 (1158)
T ss_dssp             CCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEE
T ss_pred             CCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEE
Confidence                  24667777666665544322 22344444   3222 46788775          3477999998743322111


Q ss_pred             eeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEE
Q 001163          966 FLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVG 1045 (1134)
Q Consensus       966 ~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~ 1045 (1134)
                      ...+ .      +.+++++-- +| +|+++...+|++|++...+.+. .....+ ..|..+.....|.+++.|..-..|.
T Consensus       881 ~~~v-~------g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~-~~~~~~-~~i~~~~l~~~~~~I~vgD~~~Sv~  949 (1158)
T 3ei3_A          881 EKEV-K------GAVYSMVEF-NG-KLLASINSTVRLYEWTTEKELR-TECNHY-NNIMALYLKTKGDFILVGDLMRSVL  949 (1158)
T ss_dssp             EEEE-S------SCEEEEEEE-TT-EEEEEETTEEEEEEECTTSCEE-EEEEEC-CCSCEEEEEEETTEEEEEESSBCEE
T ss_pred             EEEc-C------CcCEEEeee-CC-EEEEEcCCEEEEEECCCCceEE-EEeecc-ccEEEEEEeccCCEEEEEEhhheEE
Confidence            1111 1      356766633 23 6777888999999998665433 211111 1233333434578888888777777


Q ss_pred             Eeec--CCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCC
Q 001163         1046 VLTA--STLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1103 (1134)
Q Consensus      1046 vwd~--~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~ 1103 (1134)
                      ++..  ..+++...-.  .+    +...++++  .|-  +...++.+..+|.|.+...+.
T Consensus       950 ~~~y~~~~~~L~~~a~--D~----~~~~vta~--~~l--d~~t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          950 LLAYKPMEGNFEEIAR--DF----NPNWMSAV--EIL--DDDNFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             EEEEETTTTEEEEEEE--CC----SCBCEEEE--EEE--ETTEEEEEETTSEEEEEEECT
T ss_pred             EEEEEcCCCeEEEEEe--ec----ccccEEEE--EEE--ccCcEEEEcCCCcEEEEecCC
Confidence            6554  3333321111  11    11224444  333  235888899999999998764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.80  E-value=1.3e-06  Score=105.80  Aligned_cols=81  Identities=10%  Similarity=0.111  Sum_probs=55.8

Q ss_pred             CeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCce-EEEEEeeCCC-E
Q 001163          864 GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRI-TGLAFSNTLN-V  941 (1134)
Q Consensus       864 g~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V-~~l~~s~d~~-~  941 (1134)
                      |.|..||+.+++.+....... ......+.. .+.++++|+.||.++.||..+|+.+..++...+.. .-+.+..+|+ +
T Consensus       438 g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t-~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~y  515 (668)
T 1kv9_A          438 GALLAWDPVKQKAAWKVPYPT-HWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY  515 (668)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ceEEEEeCCCCcEEEEccCCC-CCcCceeEe-CCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEE
Confidence            789999999999988876332 222223333 45688899999999999999999998876543211 2345556776 4


Q ss_pred             EEEEe
Q 001163          942 LVSSG  946 (1134)
Q Consensus       942 l~s~s  946 (1134)
                      ++.++
T Consensus       516 va~~~  520 (668)
T 1kv9_A          516 VAIMA  520 (668)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            44443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.79  E-value=2.5e-06  Score=103.16  Aligned_cols=169  Identities=11%  Similarity=0.125  Sum_probs=114.1

Q ss_pred             EEEEcCCCCcEEEEEeCCCc-------------------EEEEEcccceEEEeccC--cc-------CceEEEEEeeCCC
Q 001163          889 FLAFHPQDNNIIAIGMEDSS-------------------IQIYNVRVDEVKTKLKG--HQ-------KRITGLAFSNTLN  940 (1134)
Q Consensus       889 ~l~~sp~~~~~la~g~~dg~-------------------i~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~~  940 (1134)
                      .+++.| +..+++.++.++.                   |..+|..+|+.+..++.  |.       .+.....+..+|+
T Consensus       234 ~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~  312 (668)
T 1kv9_A          234 SMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK  312 (668)
T ss_dssp             CEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             ceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence            478888 6678888877763                   99999999998877654  32       2333333445775


Q ss_pred             ---EEEEEeCCCcEEEEECCCCccccceee-------ee--cCCC-------C-C-----------CCCCceEEEEcCCC
Q 001163          941 ---VLVSSGADSQLCVWSTDGWEKQASKFL-------TI--PNGR-------T-A-----------SALADTRVQFHLDQ  989 (1134)
Q Consensus       941 ---~l~s~s~Dg~i~iwd~~~~~~~~~~~~-------~~--~~~~-------~-~-----------~~~~v~~l~fs~dg  989 (1134)
                         .++.++.+|.++++|..+++.......       .+  ..+.       . .           ....-..++++|+.
T Consensus       313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~  392 (668)
T 1kv9_A          313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT  392 (668)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred             EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence               688999999999999999885411000       00  0000       0 0           00011236888887


Q ss_pred             CEEEEE-------------------------------------eeceEEEEeCCCcccceeeccCCCccCEEEEEEccCC
Q 001163          990 THLLAV-------------------------------------HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDS 1032 (1134)
Q Consensus       990 ~~l~~~-------------------------------------~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg 1032 (1134)
                      ..+++.                                     .++.|..||..+++.+.....   ...+....++..|
T Consensus       393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~~~~~t~g  469 (668)
T 1kv9_A          393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY---PTHWNGGTLSTAG  469 (668)
T ss_dssp             TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETT
T ss_pred             CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC---CCCCcCceeEeCC
Confidence            776651                                     237899999999998766653   2233334555678


Q ss_pred             CEEEEEecCCcEEEeecCCCcceeecCCC
Q 001163         1033 QSIYVAFEEGSVGVLTASTLRLRCRINPT 1061 (1134)
Q Consensus      1033 ~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~ 1061 (1134)
                      .++++++.|+.+++||..+|+.+.++...
T Consensus       470 g~vf~g~~dg~l~a~d~~tG~~l~~~~~~  498 (668)
T 1kv9_A          470 NLVFQGTAAGQMHAYSADKGEALWQFEAQ  498 (668)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CEEEEECCcccchhhhhhcChhheEecCC
Confidence            89999999999999999999999887643

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.79  E-value=0.0017  Score=82.53  Aligned_cols=624  Identities=9%  Similarity=0.043  Sum_probs=297.4

Q ss_pred             CCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCC----CCE
Q 001163          357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD----GTL  432 (1134)
Q Consensus       357 ~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----~~~  432 (1134)
                      ..-+++++-.+|  +++.|+..|.=.+|.+.....-....+.+.+            .-..-++|.+++....    ...
T Consensus       327 ~~~ssl~~l~~g--~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~------------~~~N~~PI~D~~v~d~~~~~~~~  392 (1158)
T 3ei3_A          327 SIAECLTYLDNG--VVFVGSRLGDSQLVKLNVDSNEQGSYVVAME------------TFTNLGPIVDMCVVDLERQGQGQ  392 (1158)
T ss_dssp             SCCSEEEECSTT--EEEEECSSSCEEEEEECSSCCTTSCCEEEEE------------EECCCCSEEEEEEECTTSSSCCE
T ss_pred             cCccEEEEECCC--EEEEEEecCCcEEEEEecCCCCccceEEeEe------------eecCcCCceeEEEEccCCCCCCe
Confidence            334566666666  4678888887777777643210000001100            1123468888877542    235


Q ss_pred             EEEEe---CCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEec---CCCceEEEEEeCCCeEEEEECCCCceeEEec--
Q 001163          433 FGVAY---SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY---PNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE--  504 (1134)
Q Consensus       433 las~s---~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~---~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--  504 (1134)
                      |++++   .+|.+++..-.-+-.......+.+ -..++.+....   .+.  +|+.+..+.+ .|+.+. ++.+....  
T Consensus       393 i~~~sG~g~~gsL~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~--yLvlS~~~~T-~Vl~i~-~e~veev~~~  467 (1158)
T 3ei3_A          393 LVTCSGAFKEGSLRIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDD--TLVLSFVGQT-RVLMLN-GEEVEETELM  467 (1158)
T ss_dssp             EEEEECCGGGCEEEEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCC--EEEEEETTEE-EEEEEE-TTEEEEECCT
T ss_pred             EEEEECcCCCCeEEEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCC--EEEEECCCCe-EEEEEe-CCcccccccc
Confidence            55443   467888875432221111112332 24456555432   223  5666666655 455542 22333221  


Q ss_pred             CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCC-CCeeEEEECcCCCEEEEEecCCCCCeEEEEEe
Q 001163          505 GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG-HSSTMMAYSADGARLFSCGTNKEGESYLVEWN  583 (1134)
Q Consensus       505 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd  583 (1134)
                      +.......++...-++ ..++=.. ...|++.+.........+.... ..|...+.+.  .+++.+. ++    .+..+.
T Consensus       468 gf~~~~~TL~~~~l~~-~~ivQVt-~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-g~----~l~~fe  538 (1158)
T 3ei3_A          468 GFVDDQQTFFCGNVAH-QQLIQIT-SASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-GR----ALYYLQ  538 (1158)
T ss_dssp             TCCSSSCEEEEEEETT-TEEEEEE-SSCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-TT----EEEEEE
T ss_pred             cccCCCCcEEEEEcCC-CeEEEEe-cCEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-CC----EEEEEE
Confidence            1111111111111112 1222222 2345666654433443444333 3566665543  4555553 21    366666


Q ss_pred             CCCCeeEEEecCCCCCceEEEEEcCC------CCEEEEEeC-CCeEEEEEcCCCceeEEEecCCCCCCcceEEEc--CCC
Q 001163          584 ESEGAVKRTYHGLGKRSVGVVQFDTT------KNRFLAAGD-EFMIKFWDMDNVNLLASIDADGGLQASPCIRFN--KEG  654 (1134)
Q Consensus       584 ~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s--p~~  654 (1134)
                      +..++........-...|.++++.+.      +.+++.|.. |++|+|+++.+.+.+....... .....++.+.  ...
T Consensus       539 l~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~-~~~p~si~l~~~~~~  617 (1158)
T 3ei3_A          539 IHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG-EIIPRSILMTTFESS  617 (1158)
T ss_dssp             EETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCS-SCCEEEEEEEEETTE
T ss_pred             eeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCC-CCCCcEEEEEEeCCC
Confidence            66554332222122337889988763      368888885 9999999999877665544321 1223333332  234


Q ss_pred             cEEEEEECCCcEEEEEcc--CCceeEEE---eccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCC
Q 001163          655 ILLAVSTNDNGIKILANA--DGIRLLRT---VESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGM  729 (1134)
Q Consensus       655 ~~l~~~~~dg~i~iw~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  729 (1134)
                      .+|.+|-.||.+.-+.+.  ++ .+...   ..|..                                    |+ ....+
T Consensus       618 ~~L~igl~dG~l~~~~~d~~tg-~l~d~r~~~LG~~------------------------------------pv-~L~~~  659 (1158)
T 3ei3_A          618 HYLLCALGDGALFYFGLNIETG-LLSDRKKVTLGTQ------------------------------------PT-VLRTF  659 (1158)
T ss_dssp             EEEEEEETTSEEEEEEECTTTC-CEEEEEEEECCSS------------------------------------CC-EEEEE
T ss_pred             cEEEEEeCCCeEEEEEEcCCCC-ccccceeEEcCCC------------------------------------ce-EEEEE
Confidence            678889999988766554  23 11111   11100                                    00 00000


Q ss_pred             CCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEE-EEEEecC--CceeeeeccCCeEEeeecC
Q 001163          730 SNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVS-RLIYTNS--GLAILALASNAVHKLWKWP  806 (1134)
Q Consensus       730 ~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~-~l~~spd--g~~l~~~~~dg~i~vw~~~  806 (1134)
                      ...      +...+.+.+++...++...+   .-....+      ....+. ...|+..  ..-++..+ ++.++|..++
T Consensus       660 ~~~------~~~~V~a~s~rp~liy~~~~---~l~~s~l------~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~  723 (1158)
T 3ei3_A          660 RSL------STTNVFACSDRPTVIYSSNH---KLVFSNV------NLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTID  723 (1158)
T ss_dssp             ESS------SCEEEEEESSSCEEEEESSS---SEEEEEB------SSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEEC
T ss_pred             eeC------CceeEEEECCCCEEEEEcCC---ceEEecc------ChHHhceEeccCcccCCCcEEEEc-CCceEEEEec
Confidence            000      00111111112222221110   0000000      011121 2234321  12244333 3458887664


Q ss_pred             CCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee------------------------
Q 001163          807 RNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS------------------------  862 (1134)
Q Consensus       807 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s------------------------  862 (1134)
                      ..                   ..-....  ++   -...++.++++|+.+.++.+.                        
T Consensus       724 ~~-------------------~~~~~~~--ip---L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  779 (1158)
T 3ei3_A          724 EI-------------------QKLHIRT--VP---LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQAL  779 (1158)
T ss_dssp             CS-------------------SSEEEEE--EE---CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCS
T ss_pred             cc-------------------CCeeEEE--Ee---CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhh
Confidence            21                   0000111  11   234556666666655433321                        


Q ss_pred             --------------------------CCeEEEEEccCCeEEEEecCCC-CCeEEEE---EcCCCCcEEEEEe--------
Q 001163          863 --------------------------GGKISLFNMMTFKTMTTFMPPP-PAATFLA---FHPQDNNIIAIGM--------  904 (1134)
Q Consensus       863 --------------------------dg~i~lwd~~~~~~~~~~~~~~-~~v~~l~---~sp~~~~~la~g~--------  904 (1134)
                                                -+.|++.|..+++.+..+.-.. ..+.+++   |..+...++++|+        
T Consensus       780 ~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~  859 (1158)
T 3ei3_A          780 SSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEA  859 (1158)
T ss_dssp             EEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCS
T ss_pred             hhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCC
Confidence                                      1247788888888776655333 3355554   3332357899887        


Q ss_pred             --CCCcEEEEEcccceEEEec-cCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCce
Q 001163          905 --EDSSIQIYNVRVDEVKTKL-KGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADT  981 (1134)
Q Consensus       905 --~dg~i~iwd~~~~~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~  981 (1134)
                        ..|.|++|++..++..... ....++|++++-- +|++|+..  ..+|++|++...+...... ...       ..+.
T Consensus       860 ~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~l~~~~~L~~~~-~~~-------~~i~  928 (1158)
T 3ei3_A          860 EPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI--NSTVRLYEWTTEKELRTEC-NHY-------NNIM  928 (1158)
T ss_dssp             SCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE--TTEEEEEEECTTSCEEEEE-EEC-------CCSC
T ss_pred             CCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc--CCEEEEEECCCCceEEEEe-ecc-------ccEE
Confidence              3578999999755432211 1245778887744 46544443  4789999998644222111 001       1133


Q ss_pred             EEEEcCCCCEEEEEe-eceEEE--EeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcce---
Q 001163          982 RVQFHLDQTHLLAVH-ETQIAI--YEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLR--- 1055 (1134)
Q Consensus       982 ~l~fs~dg~~l~~~~-d~~i~i--wd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~--- 1055 (1134)
                      .+.....+.++++|. -..|.+  |+....+ +..+...-+...++++.|-.++ .++.+..+|.+.+.........   
T Consensus       929 ~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~-L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~~~~~~~~ 1006 (1158)
T 3ei3_A          929 ALYLKTKGDFILVGDLMRSVLLLAYKPMEGN-FEEIARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDSAATTDEE 1006 (1158)
T ss_dssp             EEEEEEETTEEEEEESSBCEEEEEEETTTTE-EEEEEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECTTCCSTTG
T ss_pred             EEEEeccCCEEEEEEhhheEEEEEEEcCCCe-EEEEEeecccccEEEEEEEccC-cEEEEcCCCcEEEEecCCCCCCccc
Confidence            334444567777762 244544  4444332 2223223457789999998665 5666889999999987652110   


Q ss_pred             -eecCCCcccCCCCCCCceeEEE-EecCCC--------CCEEEEEecCCcEEEEeCC
Q 001163         1056 -CRINPTAYLPTNPSLRVYPLVI-AGNPTD--------PNQFALGLTDGGVYIIEPL 1102 (1134)
Q Consensus      1056 -~~~~~~~~~~~~h~~~v~~~~~-~~~p~~--------~~~l~s~~~Dg~v~vW~~~ 1102 (1134)
                       .++.....+-  ....|+.+.- +..+..        ...++.++.+|+|-+.-.-
T Consensus      1007 ~~~L~~~~~fh--lG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~pl 1061 (1158)
T 3ei3_A         1007 RQHLQEVGLFH--LGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSL 1061 (1158)
T ss_dssp             GGBEEEEEEEE--CSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEEEE
T ss_pred             cceeeeEEEEe--CCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEEEc
Confidence             1111000000  1133444321 122211        2458889999999877554

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.78  E-value=0.00099  Score=79.18  Aligned_cols=533  Identities=10%  Similarity=0.005  Sum_probs=273.4

Q ss_pred             eEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEE-eCCCEEEEEEcc
Q 001163          370 ILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA-YSKHIVHLYTYH  448 (1134)
Q Consensus       370 ~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~-s~dg~v~iwd~~  448 (1134)
                      +|+++  ..+.|+..|+.+.......                  ....-..+..|+|++++..|..+ ..++.|..+++.
T Consensus         8 ~Ll~s--~~~~I~~i~l~~~~~~~~~------------------~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~   67 (628)
T 4a0p_A            8 FLLFS--RRADIRRISLETNNNNVAI------------------PLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMN   67 (628)
T ss_dssp             EEEEE--ETTEEEEEESSCTTCEEEC------------------CCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EEEEE--eCCcEEEEECCCCCcceEE------------------EcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECC
Confidence            34443  4567888888765422110                  11123468899999976666554 567889999987


Q ss_pred             CCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEe-
Q 001163          449 GGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFST-  527 (1134)
Q Consensus       449 ~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-  527 (1134)
                      .... ..  .+.........+++.+.+.. ++++-...+.|.+.++........+...-.....|++.+.. |.++++- 
T Consensus        68 g~~~-~~--v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~-G~lY~tD~  142 (628)
T 4a0p_A           68 GSAL-EH--VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAE-GFMYWTEW  142 (628)
T ss_dssp             SCSC-EE--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTT-TEEEEEEC
T ss_pred             CCCc-EE--EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCC-CeEEEeCC
Confidence            6532 21  12222245678999877765 45566667899999976543322232334456788886543 3444443 


Q ss_pred             cCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEc
Q 001163          528 ATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFD  607 (1134)
Q Consensus       528 s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~  607 (1134)
                      +..+.|...+++......... .......++++++++.|+.+-.   +...|...|+..... ..+..... ....+++.
T Consensus       143 g~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~~~-~v~~~~l~-~P~glav~  216 (628)
T 4a0p_A          143 GGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNR-EVIADDLP-HPFGLTQY  216 (628)
T ss_dssp             SSSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECCS-CEEEEEEE
T ss_pred             CCCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEEC---CCCEEEEEcCCCCce-EEeeccCC-CceEEEEE
Confidence            235678778777554433332 3446789999998888887653   244688899865433 23332222 44567765


Q ss_pred             CCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceE-EEcCCCcEEEEEECCCcEEEEEccCC---ceeEEEec
Q 001163          608 TTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCI-RFNKEGILLAVSTNDNGIKILANADG---IRLLRTVE  682 (1134)
Q Consensus       608 ~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v-~~sp~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~  682 (1134)
                      .  ..++.+. ..+.|...|..+++....+...  ......+ .+++..+.   + .+...    ..++   ..++....
T Consensus       217 ~--~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~--~~~p~~i~v~~~~~q~---~-~n~C~----~~ng~C~~~C~~~~~  284 (628)
T 4a0p_A          217 Q--DYIYWTDWSRRSIERANKTSGQNRTIIQGH--LDYVMDILVFHSSRQS---G-WNECA----SSNGHCSHLCLAVPV  284 (628)
T ss_dssp             T--TEEEEEETTTTEEEEEETTTCCSCEEEECS--CCSCCEEEEECGGGSC---C-CCTTT----TTGGGCSSEEEEETT
T ss_pred             C--CEEEEecCCCCEEEEEECCCCCceEEEecC--CCCcceeeeeeecccc---c-ceEec----cCCCCcchhhhcCCC
Confidence            4  3455544 6788999998887766665432  1122222 22221110   0 00000    0000   00000000


Q ss_pred             cCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccC-cccccccccccccccceeeecccCC
Q 001163          683 SRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNF-TDVKPKIADEAVEKSRIWKLTEITE  761 (1134)
Q Consensus       683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~iw~~~~~~~  761 (1134)
                      +           ...+             ..|.+          ..+..+++.. +....++. +....|+-..+.....
T Consensus       285 ~-----------~~~C-------------~C~~g----------~~l~~d~~~C~~~~~~Ll~-s~~~~i~~i~l~~~~~  329 (628)
T 4a0p_A          285 G-----------GFVC-------------GCPAH----------YSLNADNRTCSAPTTFLLF-SQKSAINRMVIDEQQS  329 (628)
T ss_dssp             T-----------EEEE-------------ECSTT----------CEECTTSSCEECCSSEEEE-EETTEEEEECCCTTCC
T ss_pred             C-----------CeeE-------------EcCCC----------cEecccCCcCccccceeee-eccceEEEEecccccC
Confidence            0           0000             00000          0000111110 01111221 1223333333321110


Q ss_pred             ccceeccccCCccccccEEEEEEecCCceeeeec-cCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCC
Q 001163          762 PSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALA-SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDT  840 (1134)
Q Consensus       762 ~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  840 (1134)
                      ..    ..++. ..-..+.+++|.+.+..|+.+. ..+.|..++++....                   ..++.....+.
T Consensus       330 ~~----~~l~~-~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~-------------------~~v~~~~~~~~  385 (628)
T 4a0p_A          330 PD----IILPI-HSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQG-------------------FTVVVSSVPSQ  385 (628)
T ss_dssp             CC----EECCC-TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------------------EEEEC------
T ss_pred             ce----EEEEe-hhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCc-------------------eEEEEcccccc
Confidence            00    11111 1234578899998766555544 356777665432100                   00110000000


Q ss_pred             CCCCCeeEEEEcCCCCeEEEee--CCeEEEEEccCCeEEEEe-cCCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEEcc
Q 001163          841 NPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTTF-MPPPPAATFLAFHPQDNNIIAIGMEDS--SIQIYNVR  915 (1134)
Q Consensus       841 ~h~~~v~~v~~s~dg~~la~~s--dg~i~lwd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~~la~g~~dg--~i~iwd~~  915 (1134)
                      .....+..+++...++.|..+.  .+.|.+.++. |+....+ .........+++.|..|.++.+-....  .|...+++
T Consensus       386 ~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d  464 (628)
T 4a0p_A          386 NLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALD  464 (628)
T ss_dssp             --CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETT
T ss_pred             cccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCC
Confidence            0234578999999877766554  5789999985 4444443 334567899999994555444433332  46656655


Q ss_pred             cceEEEeccCccCceEEEEEeeCCCEEEEEe-CCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE
Q 001163          916 VDEVKTKLKGHQKRITGLAFSNTLNVLVSSG-ADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA  994 (1134)
Q Consensus       916 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~  994 (1134)
                      ...........-...+.|++.+++..|..+. ..+.|...+++....   ..+..  ...   .....+++..  ..|..
T Consensus       465 G~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r---~~~~~--~~~---~~P~glav~~--~~ly~  534 (628)
T 4a0p_A          465 GTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANR---IVLED--SNI---LQPVGLTVFE--NWLYW  534 (628)
T ss_dssp             SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEEC--SSC---SCEEEEEEET--TEEEE
T ss_pred             CCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCce---EEEEc--CCC---CCcEEEEEEC--CEEEE
Confidence            3222222222234568999999877777664 457899999876431   11111  111   2345666644  34444


Q ss_pred             E--eeceEEEEeCCCcccceeec
Q 001163          995 V--HETQIAIYEAPKLECLKQFV 1015 (1134)
Q Consensus       995 ~--~d~~i~iwd~~~~~~~~~~~ 1015 (1134)
                      +  ..+.|...|..+|+....+.
T Consensus       535 tD~~~~~i~~~~k~~G~~~~~i~  557 (628)
T 4a0p_A          535 IDKQQQMIEKIDMTGREGRTKVQ  557 (628)
T ss_dssp             EETTTTEEEEEETTSSSCCEEEE
T ss_pred             EECCCCeEEEEECcCCCCcEEEe
Confidence            3  45677777777776554443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.76  E-value=1.9e-05  Score=83.81  Aligned_cols=224  Identities=12%  Similarity=0.052  Sum_probs=142.0

Q ss_pred             CCEEEEEEcCCCCEEEEE-eCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC
Q 001163          419 ASVNRVMWSPDGTLFGVA-YSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG  497 (1134)
Q Consensus       419 ~~V~~l~~spd~~~las~-s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~  497 (1134)
                      ..+.+++|++++..|..+ ..++.|..++..++....   .+.........+++++++.. ++++....+.|.+++....
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~  111 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT  111 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE---EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence            467899999976655554 457899999998654221   12222346789999997764 4556666789999997643


Q ss_pred             ceeEEecCCCcCEEEEeccccCCccEEEEecC--CCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCC
Q 001163          498 TKQYIFEGHESPVYSICPHHKENIQFIFSTAT--DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG  575 (1134)
Q Consensus       498 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~  575 (1134)
                      ...............+++++.. +.++++...  .+.|..++++.................+++++++..|+.+..   +
T Consensus       112 ~~~~~~~~~~~~P~~i~vd~~~-g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~---~  187 (267)
T 1npe_A          112 QRRVLFDTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA---G  187 (267)
T ss_dssp             SCEEEECSSCSSEEEEEEETTT-TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---T
T ss_pred             CEEEEEECCCCCccEEEEeeCC-CEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---C
Confidence            3222222222456788886533 244444433  468888887654333222223345778999999888877653   2


Q ss_pred             CeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCC
Q 001163          576 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG  654 (1134)
Q Consensus       576 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~  654 (1134)
                      ...|..+|.........+....  ....++..  +..++.+. ..+.|.++|..+++.+..+.... ......+++.|++
T Consensus       188 ~~~I~~~~~~g~~~~~~~~~~~--~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~~~  262 (267)
T 1npe_A          188 THRAECLNPAQPGRRKVLEGLQ--YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIALSQ  262 (267)
T ss_dssp             TTEEEEEETTEEEEEEEEECCC--SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEECSC
T ss_pred             CCEEEEEecCCCceEEEecCCC--CceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeecCcc
Confidence            4469999987654444433322  34556654  45666555 67899999999999988886422 2235678888876


Q ss_pred             c
Q 001163          655 I  655 (1134)
Q Consensus       655 ~  655 (1134)
                      .
T Consensus       263 ~  263 (267)
T 1npe_A          263 C  263 (267)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.71  E-value=1.4e-06  Score=90.14  Aligned_cols=217  Identities=10%  Similarity=0.022  Sum_probs=145.5

Q ss_pred             CeEEEEecCCCC--CeEEEEEcCCCCcEEEEEeC--CCcEEEEEcccceEEEeccCccC-ceEEEEEeeCCCEEE-EEeC
Q 001163          874 FKTMTTFMPPPP--AATFLAFHPQDNNIIAIGME--DSSIQIYNVRVDEVKTKLKGHQK-RITGLAFSNTLNVLV-SSGA  947 (1134)
Q Consensus       874 ~~~~~~~~~~~~--~v~~l~~sp~~~~~la~g~~--dg~i~iwd~~~~~~~~~l~~h~~-~V~~l~~s~d~~~l~-s~s~  947 (1134)
                      .+.+.++. |..  ....++|++ ++.++++.+.  ++.|+++|+.+++.+..+.-... ....+++.  ++.|+ +.-.
T Consensus         9 ~~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~   84 (266)
T 2iwa_A            9 VEVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL   84 (266)
T ss_dssp             EEEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred             ceEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence            45566664 443  368999999 6655555443  57999999999998887653221 12245554  54554 4456


Q ss_pred             CCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-eeceEEEEeCCCcccceeeccCCCc---cCE
Q 001163          948 DSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLECLKQFVPREAS---GPI 1023 (1134)
Q Consensus       948 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~---~~v 1023 (1134)
                      ++.+.++|..+.+...    .+..+ ..     ....+++||+.|+++ .+++|.++|..+.+.+..+....+.   ..+
T Consensus        85 ~~~v~viD~~t~~v~~----~i~~g-~~-----~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~  154 (266)
T 2iwa_A           85 KNIGFIYDRRTLSNIK----NFTHQ-MK-----DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRL  154 (266)
T ss_dssp             CSEEEEEETTTTEEEE----EEECC-SS-----SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred             CCEEEEEECCCCcEEE----EEECC-CC-----CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccc
Confidence            7899999999866332    22222 11     124477788888775 4678999999999988887743321   246


Q ss_pred             EEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCccc----CCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEE
Q 001163         1024 THATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYL----PTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYII 1099 (1134)
Q Consensus      1024 ~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~----~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW 1099 (1134)
                      ..+.|. ||...+....++.|.+.|..+++.+..+......    ...+.....+..++|+|+...+++++...+.|++-
T Consensus       155 nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i  233 (266)
T 2iwa_A          155 NELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEI  233 (266)
T ss_dssp             EEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred             eeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence            788888 7765555556789999999999998887743211    01122223456679999656678888889999999


Q ss_pred             eCCCCC
Q 001163         1100 EPLEAE 1105 (1134)
Q Consensus      1100 ~~~~~~ 1105 (1134)
                      ++...+
T Consensus       234 ~l~~~~  239 (266)
T 2iwa_A          234 KLHLVR  239 (266)
T ss_dssp             EEEECC
T ss_pred             EEeccc
Confidence            987643

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.71  E-value=1.6e-06  Score=89.70  Aligned_cols=201  Identities=10%  Similarity=0.048  Sum_probs=138.7

Q ss_pred             CeeEEEEcCCCCeEEEee---CCeEEEEEccCCeEEEEecCCC-CCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEE
Q 001163          845 AVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMTTFMPPP-PAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVK  920 (1134)
Q Consensus       845 ~v~~v~~s~dg~~la~~s---dg~i~lwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~  920 (1134)
                      ....++|++|+.+.++.+   ++.|+++|+.+++.+..+.... .....+++.  ++++.++.-.++.+.++|..+.+.+
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence            457899999876555543   4789999999999999875322 233456665  4456666667889999999999999


Q ss_pred             EeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-eece
Q 001163          921 TKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQ  999 (1134)
Q Consensus       921 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~  999 (1134)
                      .++..-...  ...+++||+.|+.+..+++|.++|..+.+...  .+.+.....+ ...+..+.|. ||+..+.. .++.
T Consensus       100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~--~I~Vg~~~~p-~~~~nele~~-dg~lyvn~~~~~~  173 (266)
T 2iwa_A          100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIK--KHNVKYNGHR-VIRLNELEYI-NGEVWANIWQTDC  173 (266)
T ss_dssp             EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEE--EEECEETTEE-CCCEEEEEEE-TTEEEEEETTSSE
T ss_pred             EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEE--EEEECCCCcc-cccceeEEEE-CCEEEEecCCCCe
Confidence            887533121  24466788888877778899999998866433  2222211100 0135677888 77544433 5689


Q ss_pred             EEEEeCCCcccceeeccCCC-----------ccCEEEEEEccCCCEEE-EEecCCcEEEeecCCCc
Q 001163         1000 IAIYEAPKLECLKQFVPREA-----------SGPITHATYSCDSQSIY-VAFEEGSVGVLTASTLR 1053 (1134)
Q Consensus      1000 i~iwd~~~~~~~~~~~~~~h-----------~~~v~~~~~s~dg~~l~-s~s~Dg~i~vwd~~~~~ 1053 (1134)
                      |.+.|..+++.+..+...+-           ......++|+|+++.|+ ++...+.+.+.++....
T Consensus       174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~  239 (266)
T 2iwa_A          174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR  239 (266)
T ss_dssp             EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred             EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence            99999999999888864210           13568999999997655 55567888888876643

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.67  E-value=8.1e-06  Score=96.17  Aligned_cols=167  Identities=12%  Similarity=0.103  Sum_probs=104.8

Q ss_pred             EEEEcCCCCcEEEEEeCC----------------CcEEEEEcccceEEEeccCcc----------CceEEEEEe-eCC--
Q 001163          889 FLAFHPQDNNIIAIGMED----------------SSIQIYNVRVDEVKTKLKGHQ----------KRITGLAFS-NTL--  939 (1134)
Q Consensus       889 ~l~~sp~~~~~la~g~~d----------------g~i~iwd~~~~~~~~~l~~h~----------~~V~~l~~s-~d~--  939 (1134)
                      .+++.+ ...+|+.++.+                +.|.-+|..+|+.+..++...          .++. +... .+|  
T Consensus       245 ~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~  322 (599)
T 1w6s_A          245 WYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKA  322 (599)
T ss_dssp             CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCE
T ss_pred             ceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcE
Confidence            356667 55577777655                379999999999887665421          1121 2222 467  


Q ss_pred             -CEEEEEeCCCcEEEEECCCCccccceeee--------e--cCCC---------------------CCCCCCceEEEEcC
Q 001163          940 -NVLVSSGADSQLCVWSTDGWEKQASKFLT--------I--PNGR---------------------TASALADTRVQFHL  987 (1134)
Q Consensus       940 -~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~--------~--~~~~---------------------~~~~~~v~~l~fs~  987 (1134)
                       +.++.++.+|.+.++|..+++..-.....        +  ..+.                     ......-..++++|
T Consensus       323 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp  402 (599)
T 1w6s_A          323 RKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP  402 (599)
T ss_dssp             EEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred             EEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence             56778899999999999988753211100        0  0000                     00001113467777


Q ss_pred             CCCEEEEE----------------------------------------eeceEEEEeCCCcccceeeccCCCccCEEEEE
Q 001163          988 DQTHLLAV----------------------------------------HETQIAIYEAPKLECLKQFVPREASGPITHAT 1027 (1134)
Q Consensus       988 dg~~l~~~----------------------------------------~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~ 1027 (1134)
                      +..++++.                                        ..+.|.-||+.+++.+.+....   .++.+-.
T Consensus       403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~  479 (599)
T 1w6s_A          403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER---FAVWGGT  479 (599)
T ss_dssp             TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES---SCCCSBC
T ss_pred             CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC---CCccCcc
Confidence            77666542                                        2367888999998877665421   1122112


Q ss_pred             EccCCCEEEEEecCCcEEEeecCCCcceeecCC
Q 001163         1028 YSCDSQSIYVAFEEGSVGVLTASTLRLRCRINP 1060 (1134)
Q Consensus      1028 ~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~ 1060 (1134)
                      +...|.+++.++.|+.++.||..+|+.+.++..
T Consensus       480 ~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l  512 (599)
T 1w6s_A          480 MATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI  512 (599)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             eEecCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence            334677888899999999999999999988763

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.62  E-value=6.3e-05  Score=79.64  Aligned_cols=242  Identities=12%  Similarity=0.023  Sum_probs=146.8

Q ss_pred             CEEEEEeCCCEEEEEEccCCceee--eeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCc
Q 001163          431 TLFGVAYSKHIVHLYTYHGGDELR--NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES  508 (1134)
Q Consensus       431 ~~las~s~dg~v~iwd~~~~~~~~--~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~  508 (1134)
                      .+|..+.. +.|+.+++.+.....  ....+......+..++|++++.. ++++...++.|..+|...+.....+.....
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~   79 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDLG   79 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCE-EEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence            45555543 478888887654210  00012222345789999997764 455666678999999876554333333334


Q ss_pred             CEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCe
Q 001163          509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA  588 (1134)
Q Consensus       509 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~  588 (1134)
                      ....+++++.. +.++++-...+.|.+++++.................++++|++..|+.+.... ....|..+++....
T Consensus        80 ~p~~ia~d~~~-~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~-~~~~I~~~~~dg~~  157 (267)
T 1npe_A           80 SPEGIALDHLG-RTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-DNPKIETSHMDGTN  157 (267)
T ss_dssp             CEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS-SSCEEEEEETTSCC
T ss_pred             CccEEEEEecC-CeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC-CCcEEEEEecCCCC
Confidence            67788886533 35666666778999999875433333322224568899999777766654321 13468888875432


Q ss_pred             eEEEecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEE
Q 001163          589 VKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIK  667 (1134)
Q Consensus       589 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~  667 (1134)
                       ...+..........+++++++..|+.+. ..+.|.++|.........+..   ......++.. ++.++++....+.|.
T Consensus       158 -~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~---~~~P~gi~~d-~~~lyva~~~~~~v~  232 (267)
T 1npe_A          158 -RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG---LQYPFAVTSY-GKNLYYTDWKTNSVI  232 (267)
T ss_dssp             -CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC---CCSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred             -cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC---CCCceEEEEe-CCEEEEEECCCCeEE
Confidence             2222211222577899999887776666 668999999986554444432   1223456654 344444444568999


Q ss_pred             EEEccCCceeEEEec
Q 001163          668 ILANADGIRLLRTVE  682 (1134)
Q Consensus       668 iw~~~~~~~~~~~~~  682 (1134)
                      .++..++ .....+.
T Consensus       233 ~~d~~~g-~~~~~i~  246 (267)
T 1npe_A          233 AMDLAIS-KEMDTFH  246 (267)
T ss_dssp             EEETTTT-EEEEEEC
T ss_pred             EEeCCCC-CceEEEc
Confidence            9998887 4455543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.60  E-value=1.1e-05  Score=95.30  Aligned_cols=85  Identities=9%  Similarity=0.102  Sum_probs=54.3

Q ss_pred             CCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEE
Q 001163          905 EDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQ  984 (1134)
Q Consensus       905 ~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~  984 (1134)
                      .+|.|..||+.+|+.+.++... ..+....+...+..++.++.|+.|+.||..+++..-.  .....+..     ..-+.
T Consensus       442 ~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~--~~~~~~~~-----~~p~~  513 (571)
T 2ad6_A          442 EMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWN--FKMPSGGI-----GSPMT  513 (571)
T ss_dssp             CCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE--EECSSCCC-----SCCEE
T ss_pred             CCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEE--EeCCCCcE-----eeeEE
Confidence            3578999999999988776532 2333333444567888899999999999999874321  22222111     12244


Q ss_pred             EcCCCCEEEEEee
Q 001163          985 FHLDQTHLLAVHE  997 (1134)
Q Consensus       985 fs~dg~~l~~~~d  997 (1134)
                      +..+|+.++...+
T Consensus       514 ~~~~G~~yv~~~~  526 (571)
T 2ad6_A          514 YSFKGKQYIGSMY  526 (571)
T ss_dssp             EEETTEEEEEEEE
T ss_pred             EEECCEEEEEEEC
Confidence            6688887666443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.59  E-value=0.0046  Score=76.34  Aligned_cols=572  Identities=12%  Similarity=0.096  Sum_probs=298.4

Q ss_pred             CCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001163          356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV  435 (1134)
Q Consensus       356 ~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las  435 (1134)
                      ...|+++.-..+|...  .|+.+| +..||-..-+.        +...          .......|.++....+|. |-.
T Consensus        21 ~n~V~~I~qD~~G~lW--igT~~G-L~ryDG~~~~~--------~~~~----------~~~~~~~i~~i~~d~~g~-lWi   78 (758)
T 3ott_A           21 ASVVSCFLQDSEGLIW--IGSNKG-LFSYDGYSTQQ--------HFTY----------GENNNTRIYCGVIIDNTY-LYM   78 (758)
T ss_dssp             CCCEEEEEECTTSCEE--EEESSC-EEEECSSCEEE--------CSCT----------TSTTSSCEEEEEEETTTE-EEE
T ss_pred             cceEEEEEECCCCCEE--EEECCC-ccccCCCceEE--------EEcc----------CCCCCceEEEEEEcCCCc-EEE
Confidence            4578999999999744  455666 56677322110        0000          011245799988877764 555


Q ss_pred             EeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEec-----CCCcCE
Q 001163          436 AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE-----GHESPV  510 (1134)
Q Consensus       436 ~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-----~h~~~v  510 (1134)
                      |+.+| +..||..+.+- ..  ........|.++.. .+|.   |..++.+ -+..+|..+++... +.     .....|
T Consensus        79 gT~~G-l~~yd~~~~~f-~~--~~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~~~~-~~~~~~~l~~~~i  148 (758)
T 3ott_A           79 GTDNG-ILVYNYRADRY-EQ--PETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRKLTS-FDTRRNGLPNNTI  148 (758)
T ss_dssp             EETTE-EEEEETTTTEE-CC--CSCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCCEEE-ECHHHHCCSCSCE
T ss_pred             EeCCC-eEEEeCCCCEE-EC--cccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCeEEE-eccCCCCcCCCeE
Confidence            56666 78999887542 21  11112335777654 3553   4445554 68889987765432 21     123457


Q ss_pred             EEEeccccCCccEEEEecCCCcEEEEecCCCCceee-ecC----CCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC
Q 001163          511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD-YDA----PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES  585 (1134)
Q Consensus       511 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~----~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~  585 (1134)
                      .++..  +.++.+. .++.+ -+..++......... ...    ....|.++...+++..|..+...     -+..+|..
T Consensus       149 ~~i~~--d~~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~-----Gl~~~~~~  219 (758)
T 3ott_A          149 YSIIR--TKDNQIY-VGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEG-----YLFQYFPS  219 (758)
T ss_dssp             EEEEE--CTTCCEE-EEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEE-----EEEEEETT
T ss_pred             EEEEE--cCCCCEE-EEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEECC-----CCeEEcCC
Confidence            77764  3344444 45544 466677654332211 111    12247788777777654444422     28889988


Q ss_pred             CCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCC-----CCCCcceEEEcCCCcEEEEE
Q 001163          586 EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG-----GLQASPCIRFNKEGILLAVS  660 (1134)
Q Consensus       586 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~sp~~~~l~~~  660 (1134)
                      +++.... .......|.++....++...+ |+. +-+.+++..+++.........     ....|.++....+|.+-+ |
T Consensus       220 ~~~~~~~-~~l~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-G  295 (758)
T 3ott_A          220 TGQIKQT-EAFHNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-G  295 (758)
T ss_dssp             TTEEEEE-EEEEEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-E
T ss_pred             CCeEEec-cCCCCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-E
Confidence            7754332 111122577787777776554 444 458888887665432221100     123466777666665443 4


Q ss_pred             ECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccc
Q 001163          661 TNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVK  740 (1134)
Q Consensus       661 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  740 (1134)
                      +..| +.++....   ....+.                                                          
T Consensus       296 T~~G-l~~~~~~~---~~~~~~----------------------------------------------------------  313 (758)
T 3ott_A          296 TDYG-ISLSRYNS---ALQFIP----------------------------------------------------------  313 (758)
T ss_dssp             ESSS-EEEECCCC----CEEEE----------------------------------------------------------
T ss_pred             eCCc-ccccccCC---ceeEEe----------------------------------------------------------
Confidence            4455 43332111   000000                                                          


Q ss_pred             cccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCC
Q 001163          741 PKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQ  820 (1134)
Q Consensus       741 ~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~  820 (1134)
                                     ...           .........|.++....+|..-+. +.+|..+ ++......         .
T Consensus       314 ---------------~~~-----------~~~~~~~~~v~~i~~D~~g~lWiG-t~~Gl~~-~~~~~~~~---------~  356 (758)
T 3ott_A          314 ---------------ISQ-----------ITGTGDGNQFYSLFRDSKGFYWFG-GANGLIR-FTDPAGER---------H  356 (758)
T ss_dssp             ---------------HHH-----------HSCSCCCCBEEEEEECTTCCEEEE-ETTEEEE-ESCTTSSC---------C
T ss_pred             ---------------ccc-----------CCCCCCCceEEEEEEcCCCCEEEe-eCCccee-eccccccc---------c
Confidence                           000           000002245777777777775554 4455443 33221000         0


Q ss_pred             CCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEe--cC----CCCCeEEEEEcC
Q 001163          821 APQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTF--MP----PPPAATFLAFHP  894 (1134)
Q Consensus       821 ~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~--~~----~~~~v~~l~~sp  894 (1134)
                      .+..+......   ..+    ....|.++.-..+|.+.+.. ++-|..||..+++...-.  ..    ....|.++...+
T Consensus       357 ~~~~~~~~~~~---~~l----~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~  428 (758)
T 3ott_A          357 DAIWYRMGDKT---YPL----SHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT  428 (758)
T ss_dssp             CCEEECTTCSS---SCC----SCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT
T ss_pred             eeEEeccCCcC---CCC----CCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC
Confidence            00011100000   001    23568899988888876644 668999998876544321  11    124578888776


Q ss_pred             CCCcEEEEEeCCCcEEEEEcccc------eEE--Eecc---C-ccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccc
Q 001163          895 QDNNIIAIGMEDSSIQIYNVRVD------EVK--TKLK---G-HQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQ  962 (1134)
Q Consensus       895 ~~~~~la~g~~dg~i~iwd~~~~------~~~--~~l~---~-h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~  962 (1134)
                       ++.+ -.|+..+-+.+++..+.      ...  ..+.   + ....|.++...++|.+.+.++..+-|..+|..+++..
T Consensus       429 -~g~l-WigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~  506 (758)
T 3ott_A          429 -AGQL-WISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVT  506 (758)
T ss_dssp             -TSEE-EEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEE
T ss_pred             -CCCE-EEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceE
Confidence             5654 44666667888886531      111  1111   1 1235889998888987764444455888998765421


Q ss_pred             cceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeeccCC-CccCEEEEEEccCCCEEEEEecC
Q 001163          963 ASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPRE-ASGPITHATYSCDSQSIYVAFEE 1041 (1134)
Q Consensus       963 ~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~-h~~~v~~~~~s~dg~~l~s~s~D 1041 (1134)
                           ............+.++....+|.+-+.+. +-+..|+..+++... +...+ ....|.++... +|.+. .++.+
T Consensus       507 -----~~~~~~~~~~~~~~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~-~~~~gl~~~~i~~i~~~-~g~lW-i~t~~  577 (758)
T 3ott_A          507 -----KLFADELTGEKSPNYLLCDEDGLLWVGFH-GGVMRINPKDESQQS-ISFGSFSNNEILSMTCV-KNSIW-VSTTN  577 (758)
T ss_dssp             -----EECTTTSCGGGCEEEEEECTTSCEEEEET-TEEEEECC--CCCCB-CCCCC---CCEEEEEEE-TTEEE-EEESS
T ss_pred             -----EecCCCcCCCcccceEEECCCCCEEEEec-CceEEEecCCCceEE-ecccCCCccceEEEEEC-CCCEE-EECCC
Confidence                 22111111113577888888888766554 558888877654322 11111 13568888763 66544 45555


Q ss_pred             CcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCC
Q 001163         1042 GSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLE 1103 (1134)
Q Consensus      1042 g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~ 1103 (1134)
                      | +..||..+.+... +.    ++.   ..+...  .+... ...|..|+.+| +..+++..
T Consensus       578 G-l~~~~~~~~~~~~-~~----~~~---~~~~~~--~~~~~-~G~l~fG~~~G-l~~f~p~~  626 (758)
T 3ott_A          578 G-LWIIDRKTMDARQ-QN----MTN---KRFTSL--LFDPK-EDCVYLGGADG-FGISHSNL  626 (758)
T ss_dssp             C-EEEEETTTCCEEE-C------CC---CCCSEE--EEETT-TTEEEEECBSE-EEEEEC--
T ss_pred             C-eEEEcCCCceeEE-ec----CCC---Cceeee--EEECC-CCcEEEecCCc-eEEEChhh
Confidence            6 7788888766432 11    111   122222  22222 34677788888 55566654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.59  E-value=2.4e-06  Score=87.02  Aligned_cols=184  Identities=11%  Similarity=0.118  Sum_probs=127.0

Q ss_pred             CeeEEEEcCCCCeEEEee-CC--eEEEEEccCCeEEEEecCCCCCe--EEEEEcCCCCcEEEEEeCCCcEEEEEcccceE
Q 001163          845 AVPCFALSKNDSYVMSAS-GG--KISLFNMMTFKTMTTFMPPPPAA--TFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEV  919 (1134)
Q Consensus       845 ~v~~v~~s~dg~~la~~s-dg--~i~lwd~~~~~~~~~~~~~~~~v--~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~  919 (1134)
                      -...+.|+ ++.+..+.+ +|  .|+++|+.+++.+..+.... ..  -.+++.  ++++.+..-.++.+.+||..+.+.
T Consensus        44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~  119 (262)
T 3nol_A           44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQ  119 (262)
T ss_dssp             EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCE
T ss_pred             ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcE
Confidence            34788998 666555555 55  79999999999999886433 33  335554  445555556688999999999999


Q ss_pred             EEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecC-CCCCCCCCceEEEEcCCCCEEEEE-ee
Q 001163          920 KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPN-GRTASALADTRVQFHLDQTHLLAV-HE  997 (1134)
Q Consensus       920 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~fs~dg~~l~~~-~d  997 (1134)
                      +.++....   ....+++|++.|+.+..++.|.++|..+.+....  +.+.. +...  ..+..+.+. +|+..+.. .+
T Consensus       120 ~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~--I~V~~~g~~~--~~lNELe~~-~G~lyan~w~~  191 (262)
T 3nol_A          120 VRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRT--ITVTAHGEEL--PELNELEWV-DGEIFANVWQT  191 (262)
T ss_dssp             EEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEE--EECEETTEEC--CCEEEEEEE-TTEEEEEETTS
T ss_pred             EEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEE--EEeccCCccc--cccceeEEE-CCEEEEEEccC
Confidence            98887532   2234446788887776678899999998664432  22221 1111  224456776 67644444 57


Q ss_pred             ceEEEEeCCCcccceeeccCCC----------ccCEEEEEEccCCCEEEEEec
Q 001163          998 TQIAIYEAPKLECLKQFVPREA----------SGPITHATYSCDSQSIYVAFE 1040 (1134)
Q Consensus       998 ~~i~iwd~~~~~~~~~~~~~~h----------~~~v~~~~~s~dg~~l~s~s~ 1040 (1134)
                      +.|.+.|..+++.+..+...+-          ..-...|||+|+++.|++.+.
T Consensus       192 ~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          192 NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             CeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            8999999999999888764321          235688999999998887764

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.57  E-value=0.0052  Score=75.88  Aligned_cols=529  Identities=10%  Similarity=0.071  Sum_probs=273.1

Q ss_pred             CCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001163          356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV  435 (1134)
Q Consensus       356 ~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las  435 (1134)
                      ...|.++....+|. | -.|+.+| +..||..+++....                   .......|.++.. .+| .|-.
T Consensus        62 ~~~i~~i~~d~~g~-l-WigT~~G-l~~yd~~~~~f~~~-------------------~~~~~~~i~~i~~-~~g-~lWi  117 (758)
T 3ott_A           62 NTRIYCGVIIDNTY-L-YMGTDNG-ILVYNYRADRYEQP-------------------ETDFPTDVRTMAL-QGD-TLWL  117 (758)
T ss_dssp             SSCEEEEEEETTTE-E-EEEETTE-EEEEETTTTEECCC-------------------SCCCCSCEEEEEE-ETT-EEEE
T ss_pred             CceEEEEEEcCCCc-E-EEEeCCC-eEEEeCCCCEEECc-------------------ccCCCceEEEEEe-cCC-cEEE
Confidence            34688988888886 3 4555555 78999876532110                   0112235777765 355 4555


Q ss_pred             EeCCCEEEEEEccCCceeeeeeee-e-cCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEE-ecC----CCc
Q 001163          436 AYSKHIVHLYTYHGGDELRNHLEI-E-AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI-FEG----HES  508 (1134)
Q Consensus       436 ~s~dg~v~iwd~~~~~~~~~~~~l-~-~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~-~~~----h~~  508 (1134)
                      |+.+ -+..+|..+++. ...... . -....|.++....+|.   |..|+.+ -+..+|..+++.... ...    ...
T Consensus       118 gt~~-Gl~~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~---lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~  191 (758)
T 3ott_A          118 GALN-GLYTYQLQSRKL-TSFDTRRNGLPNNTIYSIIRTKDNQ---IYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNL  191 (758)
T ss_dssp             EETT-EEEEEETTTCCE-EEECHHHHCCSCSCEEEEEECTTCC---EEEEETT-EEEEEETTTTEEEEECCCCCTTCSSC
T ss_pred             EcCC-cceeEeCCCCeE-EEeccCCCCcCCCeEEEEEEcCCCC---EEEEeCC-CHhhCccCCCceEEecCCCccccccc
Confidence            6666 488889876552 211000 0 1234688888877776   3334444 577888776654321 111    122


Q ss_pred             CEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCe
Q 001163          509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA  588 (1134)
Q Consensus       509 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~  588 (1134)
                      .|.++..  +.++..|..|+. +-+..+|..+.............|.++....+|...+.. .++     +.+++..+++
T Consensus       192 ~i~~i~~--d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~G-----l~~~~~~~~~  262 (758)
T 3ott_A          192 FVNSLLE--DTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-DNG-----LYVYHNDTTP  262 (758)
T ss_dssp             CEEEEEE--ETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-TTE-----EEEECCTTSC
T ss_pred             eeEEEEE--ECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-CCc-----eeEEecCCCc
Confidence            4777765  333344555554 457778766433221111123357788888888766654 222     8888887765


Q ss_pred             eEEEecC------CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEec-----CCCCCCcceEEEcCCCcEE
Q 001163          589 VKRTYHG------LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA-----DGGLQASPCIRFNKEGILL  657 (1134)
Q Consensus       589 ~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~v~~v~~sp~~~~l  657 (1134)
                      .......      .....|.++....+|... .|+..| +.++....  ....+..     ......|.++.-..+|.+-
T Consensus       263 ~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-iGT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lW  338 (758)
T 3ott_A          263 LQHIIHDSRNIQSLTNNIIWNIFADQEHNIW-LGTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKGFYW  338 (758)
T ss_dssp             CEEECCCTTCTTSCSCSCEEEEEECTTCCEE-EEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCCEE
T ss_pred             EEEEEcCCCCcCcCCcCeEEEEEEcCCCCEE-EEeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCCCEE
Confidence            4332211      112357888877777544 455556 54443321  2222211     0112346677777777655


Q ss_pred             EEEECCCcEEEEEccCCce-eEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccC
Q 001163          658 AVSTNDNGIKILANADGIR-LLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNF  736 (1134)
Q Consensus       658 ~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  736 (1134)
                      + |+.+| +..++..++.. .+..+.                                                      
T Consensus       339 i-Gt~~G-l~~~~~~~~~~~~~~~~~------------------------------------------------------  362 (758)
T 3ott_A          339 F-GGANG-LIRFTDPAGERHDAIWYR------------------------------------------------------  362 (758)
T ss_dssp             E-EETTE-EEEESCTTSSCCCCEEEC------------------------------------------------------
T ss_pred             E-eeCCc-ceeecccccccceeEEec------------------------------------------------------
Confidence            4 34444 44444332200 000000                                                      


Q ss_pred             cccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCccccc
Q 001163          737 TDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKA  816 (1134)
Q Consensus       737 ~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~  816 (1134)
                                         ...     .      ........|.++.-..+|..-+ |+. +-+..|+.....+.     
T Consensus       363 -------------------~~~-----~------~~~l~~~~v~~i~~d~~g~lWi-gt~-~GL~~~~~~~~~~~-----  405 (758)
T 3ott_A          363 -------------------MGD-----K------TYPLSHNRIRHIYEDKEQQLWI-ATD-GSINRYDYATRQFI-----  405 (758)
T ss_dssp             -------------------TTC-----S------SSCCSCSCEEEEEECTTSCEEE-EET-TEEEEEETTTTEEE-----
T ss_pred             -------------------cCC-----c------CCCCCCCceEEEEECCCCCEEE-EeC-CcHhhcCcCCCcEE-----
Confidence                               000     0      0000234577787777777544 333 45666654322110     


Q ss_pred             ccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCC-----eEE---EEec---C-CC
Q 001163          817 TTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTF-----KTM---TTFM---P-PP  884 (1134)
Q Consensus       817 ~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~-----~~~---~~~~---~-~~  884 (1134)
                             .+....       .........|.++...++|.+.+...++-|.++|..+.     ...   ..+.   + ..
T Consensus       406 -------~~~~~~-------~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  471 (758)
T 3ott_A          406 -------HYNIVD-------NTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSG  471 (758)
T ss_dssp             -------EEEEEC-------CC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSC
T ss_pred             -------EeecCC-------CcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceeccccccccccccc
Confidence                   000000       00000234688888888887766554667888886531     111   1221   1 22


Q ss_pred             CCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccC---ccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCcc
Q 001163          885 PAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKG---HQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEK  961 (1134)
Q Consensus       885 ~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~---h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~  961 (1134)
                      ..|.++...+ ++.+.+.++..+-|..+|..+++.......   ....+.++....+|.+.+.. ..| +..++..+++.
T Consensus       472 ~~i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~~G-l~~~~~~~~~~  548 (758)
T 3ott_A          472 MFINQIIPDN-EGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-HGG-VMRINPKDESQ  548 (758)
T ss_dssp             SCEEEEEECT-TSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-TTE-EEEECC--CCC
T ss_pred             ceeeeEEEcC-CCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-cCc-eEEEecCCCce
Confidence            3588999888 777776444445588899887765432211   13457888888888777654 445 88888776542


Q ss_pred             ccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEE-ccCCCEEEEEec
Q 001163          962 QASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATY-SCDSQSIYVAFE 1040 (1134)
Q Consensus       962 ~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~-s~dg~~l~s~s~ 1040 (1134)
                      ..   .. ..+..  ...+.++... +|+ |..+.+.-+..||..+.+... +...  ...+....+ .+||. |..|+.
T Consensus       549 ~~---~~-~~gl~--~~~i~~i~~~-~g~-lWi~t~~Gl~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~G~-l~fG~~  616 (758)
T 3ott_A          549 QS---IS-FGSFS--NNEILSMTCV-KNS-IWVSTTNGLWIIDRKTMDARQ-QNMT--NKRFTSLLFDPKEDC-VYLGGA  616 (758)
T ss_dssp             CB---CC-CCC-----CCEEEEEEE-TTE-EEEEESSCEEEEETTTCCEEE-C--C--CCCCSEEEEETTTTE-EEEECB
T ss_pred             EE---ec-ccCCC--ccceEEEEEC-CCC-EEEECCCCeEEEcCCCceeEE-ecCC--CCceeeeEEECCCCc-EEEecC
Confidence            21   11 11111  1347777664 565 445546668888988765432 1111  122233344 34665 555777


Q ss_pred             CCcEEEeecC
Q 001163         1041 EGSVGVLTAS 1050 (1134)
Q Consensus      1041 Dg~i~vwd~~ 1050 (1134)
                      +|. ..++-.
T Consensus       617 ~Gl-~~f~p~  625 (758)
T 3ott_A          617 DGF-GISHSN  625 (758)
T ss_dssp             SEE-EEEEC-
T ss_pred             Cce-EEEChh
Confidence            774 445543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.57  E-value=3.4e-05  Score=91.15  Aligned_cols=192  Identities=11%  Similarity=0.039  Sum_probs=120.4

Q ss_pred             EEEEEeC-CCeEEEEEC-CCCceeEEecCCCc-C---------E-EEEeccccCCccEEEEecCCCcEEEEecCCCCcee
Q 001163          479 SVVTCGE-DRVIKVWDA-VTGTKQYIFEGHES-P---------V-YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV  545 (1134)
Q Consensus       479 ~l~s~s~-d~~i~iwd~-~~~~~~~~~~~h~~-~---------v-~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~  545 (1134)
                      .++.++. ++.|.-+|. .+|+.+.++..... .         + ..+++    .+..++.++.|+.|..+|..+++...
T Consensus        64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W  139 (571)
T 2ad6_A           64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence            3666666 889999999 89999887753221 0         0 01111    12578888889999999999888877


Q ss_pred             eecCCCC----CeeE-EEECcCCCEEEEEecCC--CCCeEEEEEeCCCCeeEEEecCCCCC-------------------
Q 001163          546 DYDAPGH----SSTM-MAYSADGARLFSCGTNK--EGESYLVEWNESEGAVKRTYHGLGKR-------------------  599 (1134)
Q Consensus       546 ~~~~~~~----~v~~-~~~s~~~~~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~~-------------------  599 (1134)
                      .......    .+.+ ..+ .++ .+++++...  ..++.|+.+|..+|+.+.++......                   
T Consensus       140 ~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~  217 (571)
T 2ad6_A          140 EVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF  217 (571)
T ss_dssp             EEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred             EecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence            6554321    1211 111 134 455544211  01457999999999998877643210                   


Q ss_pred             ------------------ceEEEEEcCCCCEEEEEeCC----------------CeEEEEEcCCCceeEEEecCCCCC--
Q 001163          600 ------------------SVGVVQFDTTKNRFLAAGDE----------------FMIKFWDMDNVNLLASIDADGGLQ--  643 (1134)
Q Consensus       600 ------------------~v~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~~--  643 (1134)
                                        ....+++.++...++.+..+                +.|..+|..+|+.+-.++...+..  
T Consensus       218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d  297 (571)
T 2ad6_A          218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD  297 (571)
T ss_dssp             SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred             ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence                              00135667776777776532                369999999999988876532210  


Q ss_pred             --Ccce---EEEcCCCc---EEEEEECCCcEEEEEccCCce
Q 001163          644 --ASPC---IRFNKEGI---LLAVSTNDNGIKILANADGIR  676 (1134)
Q Consensus       644 --~v~~---v~~sp~~~---~l~~~~~dg~i~iw~~~~~~~  676 (1134)
                        .+..   +....+|+   .++.++.+|.++++|..+++.
T Consensus       298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  338 (571)
T 2ad6_A          298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNL  338 (571)
T ss_dssp             CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCE
T ss_pred             cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCE
Confidence              1111   22224674   677888999999999999843

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.56  E-value=2.3e-05  Score=92.35  Aligned_cols=76  Identities=14%  Similarity=0.102  Sum_probs=51.2

Q ss_pred             CeEEEEEccCCeEEEEecCCCCCeEE-EEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCce-EEEEEeeCCCE
Q 001163          864 GKISLFNMMTFKTMTTFMPPPPAATF-LAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRI-TGLAFSNTLNV  941 (1134)
Q Consensus       864 g~i~lwd~~~~~~~~~~~~~~~~v~~-l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V-~~l~~s~d~~~  941 (1134)
                      |.|..||+.+++.+.+.......... ++.   .+.+++.++.||.++.||..+|+.+.+++.....+ .-+.+..+|+.
T Consensus       453 G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t---agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q  529 (599)
T 1w6s_A          453 GQIKAYNAITGDYKWEKMERFAVWGGTMAT---AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ  529 (599)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEE---TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CeEEEEECCCCCEEeEecCCCCccCcceEe---cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence            67899999999988876422111111 222   34577789999999999999999998776443222 23556667764


Q ss_pred             E
Q 001163          942 L  942 (1134)
Q Consensus       942 l  942 (1134)
                      .
T Consensus       530 y  530 (599)
T 1w6s_A          530 Y  530 (599)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.54  E-value=9.3e-06  Score=99.92  Aligned_cols=248  Identities=11%  Similarity=0.001  Sum_probs=136.0

Q ss_pred             CeeEEEEc-CCCCeEEEEEeCCC----cEEEEecCCc-cceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCC
Q 001163          358 AVKSMDFH-PVQQILLVVGTNMG----DVMLWEVGSR-ERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT  431 (1134)
Q Consensus       358 ~V~~v~fs-p~g~~lla~gs~dg----~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~  431 (1134)
                      .+...+|| |||++++.+.+.+|    .|+++|+.++ +.+.. .                 +.   .....++|+|||+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~-----------------~~---~~~~~~~WspDg~  233 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K-----------------VS---GTNGEIVWGPDHT  233 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C-----------------EE---EECSCCEECSSTT
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c-----------------cc---CceeeEEEecCCC
Confidence            57789999 99997766655544    4999999988 63221 0                 11   1134689999999


Q ss_pred             EEEEEeCC-----CEEEEEEccCCceeeeeeeee-cCCCCEEEEEEecCCCceEEEEEe-CCCeEEEEECCCCc-ee--E
Q 001163          432 LFGVAYSK-----HIVHLYTYHGGDELRNHLEIE-AHVGSVNDLAFSYPNKQLSVVTCG-EDRVIKVWDAVTGT-KQ--Y  501 (1134)
Q Consensus       432 ~las~s~d-----g~v~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~~~~~~~l~s~s-~d~~i~iwd~~~~~-~~--~  501 (1134)
                      .|+....|     ..|.++++.++..... ..+. .+......+.|+|||+.+++.+.+ ....|.++|+.++. ..  .
T Consensus       234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~-lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~  312 (751)
T 2xe4_A          234 SLFYVTKDETLRENKVWRHVMGKLQSEDV-CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE  312 (751)
T ss_dssp             EEEEEEECTTCCEEEEEEEETTSCGGGCE-EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred             EEEEEEECCCCCCCEEEEEECCCCchhcE-EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence            88887765     3688888877642211 1222 233456788999999953332322 23478889988762 22  3


Q ss_pred             Ee-cCCCcCEEEEeccccCCccEEEEecCC--C--cEEEEecCCCCceee-ecCCCC--CeeEEEECcCCCEEEEEecCC
Q 001163          502 IF-EGHESPVYSICPHHKENIQFIFSTATD--G--KIKAWLYDNLGSRVD-YDAPGH--SSTMMAYSADGARLFSCGTNK  573 (1134)
Q Consensus       502 ~~-~~h~~~v~~~~~~~~~~~~~l~s~s~d--g--~i~vwd~~~~~~~~~-~~~~~~--~v~~~~~s~~~~~l~~~~~~~  573 (1134)
                      .+ .+......++.|+  .++.+++....+  +  .|..+++.+...... +..+..  .+..+.+  .+..|+..... 
T Consensus       313 ~l~~~~~~~~~s~~~~--~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~~-  387 (751)
T 2xe4_A          313 IVRPREKGVRYDVQMH--GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGRR-  387 (751)
T ss_dssp             ESSCCCTTCCEEEEEE--TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEEE-
T ss_pred             EeecCCCCceEEEeee--eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEEe-
Confidence            33 3344455555432  222444554443  3  466666654222122 222333  3344444  45666554432 


Q ss_pred             CCCeEEEEEeC-------CCCeeEEEecCCCCCceEEEEE----cCCCC-EEEEEeC---CCeEEEEEcCCCce
Q 001163          574 EGESYLVEWNE-------SEGAVKRTYHGLGKRSVGVVQF----DTTKN-RFLAAGD---EFMIKFWDMDNVNL  632 (1134)
Q Consensus       574 ~~~~~i~~wd~-------~~~~~~~~~~~~~~~~v~~~~~----~~~~~-~l~~~~~---dg~i~iwd~~~~~~  632 (1134)
                      ++...|.++|+       .+++....+.......+..+.+    ++++. .+++.+.   -+.++.+|+.+++.
T Consensus       388 ~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~  461 (751)
T 2xe4_A          388 AGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR  461 (751)
T ss_dssp             TTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred             CCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence            34667888886       4444133333222112223322    34554 4444332   24677888877764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.54  E-value=7.8e-05  Score=88.08  Aligned_cols=195  Identities=11%  Similarity=0.023  Sum_probs=120.4

Q ss_pred             EEEEeCCCeEEEEECCCCceeEEecCCCcCE---------EEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCC
Q 001163          480 VVTCGEDRVIKVWDAVTGTKQYIFEGHESPV---------YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP  550 (1134)
Q Consensus       480 l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v---------~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  550 (1134)
                      ++.++.++.|.-+|..+|+.+.++.......         ..+++    .+..++.++.|+.|..+|..+++........
T Consensus        71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~  146 (582)
T 1flg_A           71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKFA  146 (582)
T ss_dssp             EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred             EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence            5555554459999999999998776432210         11111    1256788888999999999998887765543


Q ss_pred             CC----Cee-EEEECc---CCC-EEEEEecCC--CCCeEEEEEeCCCCeeEEEecCCCC---------------------
Q 001163          551 GH----SST-MMAYSA---DGA-RLFSCGTNK--EGESYLVEWNESEGAVKRTYHGLGK---------------------  598 (1134)
Q Consensus       551 ~~----~v~-~~~~s~---~~~-~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~---------------------  598 (1134)
                      ..    .+. ...+..   +|+ .+++++...  ..++.|+.+|..+|+.+........                     
T Consensus       147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w  226 (582)
T 1flg_A          147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW  226 (582)
T ss_dssp             CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred             CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence            21    111 111111   234 455543211  1245799999999998876643210                     


Q ss_pred             -------------------CceEEEEEcCCCCEEEEEeC--------------------C----CeEEEEEcCCCceeEE
Q 001163          599 -------------------RSVGVVQFDTTKNRFLAAGD--------------------E----FMIKFWDMDNVNLLAS  635 (1134)
Q Consensus       599 -------------------~~v~~~~~~~~~~~l~~~~~--------------------d----g~i~iwd~~~~~~~~~  635 (1134)
                                         ..-...++.|+...++.+..                    |    +.|..+|..+|+.+-.
T Consensus       227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~  306 (582)
T 1flg_A          227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF  306 (582)
T ss_dssp             CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred             CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence                               00013566777778887663                    2    6899999999999988


Q ss_pred             EecCCCCC----Ccce-EEEc---CCC---cEEEEEECCCcEEEEEccCCceeE
Q 001163          636 IDADGGLQ----ASPC-IRFN---KEG---ILLAVSTNDNGIKILANADGIRLL  678 (1134)
Q Consensus       636 ~~~~~~~~----~v~~-v~~s---p~~---~~l~~~~~dg~i~iw~~~~~~~~~  678 (1134)
                      ++...+..    .+.. +.+.   .+|   ..++.++.+|.++++|..+++.+.
T Consensus       307 ~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw  360 (582)
T 1flg_A          307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQN  360 (582)
T ss_dssp             EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEec
Confidence            76432210    1111 2222   467   378889999999999999995443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.50  E-value=8.8e-06  Score=82.86  Aligned_cols=182  Identities=15%  Similarity=0.100  Sum_probs=126.5

Q ss_pred             EEEEEEecCCCceEEEEEeCCC--eEEEEECCCCceeEEecCCCcC-EEEEeccccCCccEEEEecCCCcEEEEecCCCC
Q 001163          466 VNDLAFSYPNKQLSVVTCGEDR--VIKVWDAVTGTKQYIFEGHESP-VYSICPHHKENIQFIFSTATDGKIKAWLYDNLG  542 (1134)
Q Consensus       466 V~~v~~s~~~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~  542 (1134)
                      ...+.|+ ++.  ++.+.+.+|  .|+++|+.+|+.+.++.-.... -..+++  .++ .+.+..-.++.+.+||..+.+
T Consensus        45 tqGL~~~-~~~--LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~-~ly~ltw~~~~v~v~D~~t~~  118 (262)
T 3nol_A           45 TEGFFYR-NGY--FYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKD-KIVGLTWKNGLGFVWNIRNLR  118 (262)
T ss_dssp             EEEEEEE-TTE--EEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETT-EEEEEESSSSEEEEEETTTCC
T ss_pred             cceEEEE-CCE--EEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCC-EEEEEEeeCCEEEEEECccCc
Confidence            4788998 554  677777766  9999999999999887643222 123443  332 455555568999999999988


Q ss_pred             ceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCC-C---CceEEEEEcCCCCEEEEEe-
Q 001163          543 SRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG-K---RSVGVVQFDTTKNRFLAAG-  617 (1134)
Q Consensus       543 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-~---~~v~~~~~~~~~~~l~~~~-  617 (1134)
                      ....+.....   ...+++|++.|+...    +...|.++|..+.+.+.++.... .   ..++.+.|. +|. +++.. 
T Consensus       119 ~~~ti~~~~e---G~glt~dg~~L~~Sd----Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~w  189 (262)
T 3nol_A          119 QVRSFNYDGE---GWGLTHNDQYLIMSD----GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE-IFANVW  189 (262)
T ss_dssp             EEEEEECSSC---CCCEEECSSCEEECC----SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE-EEEEET
T ss_pred             EEEEEECCCC---ceEEecCCCEEEEEC----CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE-EEEEEc
Confidence            8777765432   233446787777653    34569999999999888776532 1   134456775 564 55554 


Q ss_pred             CCCeEEEEEcCCCceeEEEecCCC----------CCCcceEEEcCCCcEEEEEEC
Q 001163          618 DEFMIKFWDMDNVNLLASIDADGG----------LQASPCIRFNKEGILLAVSTN  662 (1134)
Q Consensus       618 ~dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~v~~sp~~~~l~~~~~  662 (1134)
                      .+..|.+.|..+++.+..+...+-          ....+.++|+|+++.|++.+.
T Consensus       190 ~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          190 QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            788999999999999999875321          124578999998877766664

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.50  E-value=3.2e-06  Score=85.98  Aligned_cols=206  Identities=10%  Similarity=0.036  Sum_probs=135.4

Q ss_pred             eEEEEecCCCC--CeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEE-EEeCCCcE
Q 001163          875 KTMTTFMPPPP--AATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLV-SSGADSQL  951 (1134)
Q Consensus       875 ~~~~~~~~~~~--~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~-s~s~Dg~i  951 (1134)
                      +.+.++. |..  -...+.|+  ++.+.++.+.+|.|+++|+.+++.+..+ - ..........++++.|. ..-.++.+
T Consensus        44 ~Vv~~~p-hd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g~~Ly~ltw~~~~v  118 (268)
T 3nok_A           44 HIIREYP-HATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDGERLYQLTWTEGLL  118 (268)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECSSCEEEEESSSCEE
T ss_pred             EEEEEEc-CCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeCCEEEEEEccCCEE
Confidence            4455553 443  35789997  5678888888899999999999988776 2 23343322333444444 44568899


Q ss_pred             EEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-eeceEEEEeCCCcccceeeccCCCcc---CEEEEE
Q 001163          952 CVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLECLKQFVPREASG---PITHAT 1027 (1134)
Q Consensus       952 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~---~v~~~~ 1027 (1134)
                      .+||.++.+....  +..  ...       ...+++|++.|+++ .+++|.++|..+.+.+..+....+..   .+..+.
T Consensus       119 ~V~D~~Tl~~~~t--i~~--~~e-------GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe  187 (268)
T 3nok_A          119 FTWSGMPPQRERT--TRY--SGE-------GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELE  187 (268)
T ss_dssp             EEEETTTTEEEEE--EEC--SSC-------CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred             EEEECCcCcEEEE--EeC--CCc-------eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccE
Confidence            9999998664332  222  111       13344778888886 47899999999999988877533322   446677


Q ss_pred             EccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCC----CCCCCceeEEEEecCCCCCEEEEEecCCcEE
Q 001163         1028 YSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPT----NPSLRVYPLVIAGNPTDPNQFALGLTDGGVY 1097 (1134)
Q Consensus      1028 ~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~----~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~ 1097 (1134)
                      |. ||+..+..-.++.|.+.|..+|+.+..+......+.    .+...-..-.++|+|+...++++|-.--.++
T Consensus       188 ~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~  260 (268)
T 3nok_A          188 CA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLF  260 (268)
T ss_dssp             EE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEE
T ss_pred             Ee-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceE
Confidence            76 886665555678999999999999888775422110    1111112345699997777888776655444

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.49  E-value=6.3e-06  Score=83.81  Aligned_cols=185  Identities=8%  Similarity=0.053  Sum_probs=126.0

Q ss_pred             CCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCe--EEEEEcCCCCcEEEEEeCCCcEEEEEcccceEE
Q 001163          844 DAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAA--TFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVK  920 (1134)
Q Consensus       844 ~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v--~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~  920 (1134)
                      .....+.|+. +.+..+.+ +|.|+++|+.+++.+..+  -....  ..+++.  ++++.+....++.+.+||..+.+.+
T Consensus        55 ~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~  129 (268)
T 3nok_A           55 AFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRE  129 (268)
T ss_dssp             CCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEE
T ss_pred             cccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEE
Confidence            3446888874 44444444 789999999999998887  22333  345654  4566666667899999999999999


Q ss_pred             EeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-eece
Q 001163          921 TKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQ  999 (1134)
Q Consensus       921 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~  999 (1134)
                      .++..- ..-..++  +|++.|+.+..++.|.++|..+.+....  +.+...... ...+.-+.|. +|+..+.. .+..
T Consensus       130 ~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~--I~V~~~g~~-v~~lNeLe~~-dG~lyanvw~s~~  202 (268)
T 3nok_A          130 RTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGA--VQVKLRGQP-VELINELECA-NGVIYANIWHSSD  202 (268)
T ss_dssp             EEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEE--EECEETTEE-CCCEEEEEEE-TTEEEEEETTCSE
T ss_pred             EEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEE--EEeCCCCcc-cccccccEEe-CCEEEEEECCCCe
Confidence            888753 2223444  6788888877789999999998764432  222211110 0234566776 77644444 5789


Q ss_pred             EEEEeCCCcccceeeccCC-----------CccCEEEEEEccCCCEEEEEec
Q 001163         1000 IAIYEAPKLECLKQFVPRE-----------ASGPITHATYSCDSQSIYVAFE 1040 (1134)
Q Consensus      1000 i~iwd~~~~~~~~~~~~~~-----------h~~~v~~~~~s~dg~~l~s~s~ 1040 (1134)
                      |.+.|..+++.+..+...+           -..-...||++|+++.|+..+.
T Consensus       203 I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          203 VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            9999999999888776421           1246688999998877766553

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.45  E-value=3.3e-05  Score=84.55  Aligned_cols=237  Identities=12%  Similarity=0.024  Sum_probs=144.6

Q ss_pred             eeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEe-cC------------------CCCCeEEEEEcCCCCcEEEEEeC
Q 001163          846 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTF-MP------------------PPPAATFLAFHPQDNNIIAIGME  905 (1134)
Q Consensus       846 v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~-~~------------------~~~~v~~l~~sp~~~~~la~g~~  905 (1134)
                      ..+++++++|+++.++. ++.|..||..+++...-. ..                  ....+..+++.+++++ |.++..
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~   99 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDC   99 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEET
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEEC
Confidence            45788999998666666 789999998765433211 10                  0135788999963454 445544


Q ss_pred             CCcEEEEEcccceEEEecc----C-ccCceEEEEEee-CCCEEEEEeC-----------------CCcEEEEECCCCccc
Q 001163          906 DSSIQIYNVRVDEVKTKLK----G-HQKRITGLAFSN-TLNVLVSSGA-----------------DSQLCVWSTDGWEKQ  962 (1134)
Q Consensus       906 dg~i~iwd~~~~~~~~~l~----~-h~~~V~~l~~s~-d~~~l~s~s~-----------------Dg~i~iwd~~~~~~~  962 (1134)
                      .+.|..+|..+++. ..+.    + .......+++.+ +|++.++...                 ++.|..||..+++..
T Consensus       100 ~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  178 (322)
T 2fp8_A          100 YYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT  178 (322)
T ss_dssp             TTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred             CCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence            55588888776542 2221    1 113467899999 9987776533                 366888887765421


Q ss_pred             cceeeeecCCCCCCCCCceEEEEcCCCCEEEEE--eeceEEEEeCCCccc--ceeeccCCCccCEEEEEEccCCCEEEEE
Q 001163          963 ASKFLTIPNGRTASALADTRVQFHLDQTHLLAV--HETQIAIYEAPKLEC--LKQFVPREASGPITHATYSCDSQSIYVA 1038 (1134)
Q Consensus       963 ~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~i~iwd~~~~~~--~~~~~~~~h~~~v~~~~~s~dg~~l~s~ 1038 (1134)
                      .  .....       .....++|++||+.|.++  ..+.|.+|++.....  ...+..  ..+ ...+++.++|.+.++.
T Consensus       179 ~--~~~~~-------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~va~  246 (322)
T 2fp8_A          179 L--LLKEL-------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWVSS  246 (322)
T ss_dssp             E--EEEEE-------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEEEE
T ss_pred             E--eccCC-------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEEEe
Confidence            1  11111       124679999999977765  457899999875321  111111  123 7889999999977766


Q ss_pred             ec----------CCcEEEeecCCCcceeecCCCcccCCCC-CCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCCCC
Q 001163         1039 FE----------EGSVGVLTASTLRLRCRINPTAYLPTNP-SLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAE 1105 (1134)
Q Consensus      1039 s~----------Dg~i~vwd~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~ 1105 (1134)
                      ..          .+.|..+|. .++.+..+....    +. ...+..+  ++ . +++++++....+.|..+++....
T Consensus       247 ~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~----g~~~~~~~~~--~~-~-~g~L~v~~~~~~~i~~~~~~~~~  315 (322)
T 2fp8_A          247 SEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPP----PFAGEHFEQI--QE-H-DGLLYIGTLFHGSVGILVYDKKG  315 (322)
T ss_dssp             EEETTSSTTSCEEEEEEEECT-TSCEEEEEECCT----TTTTSCCCEE--EE-E-TTEEEEECSSCSEEEEEEC----
T ss_pred             cCcccccccCCCccEEEEECC-CCCEEEEEECCC----CCccccceEE--EE-e-CCEEEEeecCCCceEEEeccccc
Confidence            54          467888886 466665554221    11 1223444  33 2 56666666678889999876443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.43  E-value=3.9e-05  Score=93.06  Aligned_cols=280  Identities=7%  Similarity=-0.009  Sum_probs=155.8

Q ss_pred             eEEEEcC-CCCeEEEEEeCCC-----------cEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc
Q 001163          360 KSMDFHP-VQQILLVVGTNMG-----------DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS  427 (1134)
Q Consensus       360 ~~v~fsp-~g~~lla~gs~dg-----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  427 (1134)
                      .++++.| +|+ +++.|+.+.           .+.+||..+++-.....                ....+.....++++.
T Consensus       189 ~~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~----------------~~~~~~~~~~~~~~~  251 (656)
T 1k3i_A          189 AAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV----------------TVTKHDMFCPGISMD  251 (656)
T ss_dssp             SEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE----------------EECSCCCSSCEEEEC
T ss_pred             eeEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc----------------cCCCCCCccccccCC
Confidence            3677787 676 667776442           58899988876322100                012233344567888


Q ss_pred             CCCCEEEEEeC-CCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEe-CC-----CeEEEEECCCCcee
Q 001163          428 PDGTLFGVAYS-KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-ED-----RVIKVWDAVTGTKQ  500 (1134)
Q Consensus       428 pd~~~las~s~-dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s-~d-----~~i~iwd~~~~~~~  500 (1134)
                      .+|+++++|+. +..+.+||..+++-.. ...+.... .-.+++..++|+  +++.|+ .+     ..+.+||..+++..
T Consensus       252 ~~g~lyv~GG~~~~~v~~yd~~t~~W~~-~~~~~~~R-~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W~  327 (656)
T 1k3i_A          252 GNGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQVAR-GYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWT  327 (656)
T ss_dssp             TTSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSSCC-SSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             CCCCEEEeCCCCCCceEEecCcCCceeE-CCCCCccc-cccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCcce
Confidence            99999999984 4589999998765322 11222111 123455667888  777777 44     57899999887643


Q ss_pred             EEe----cCCCcCEEEEeccccCCccEEEEecCC---------CcEEEEecCCCCceeeecCC---------CCCeeEEE
Q 001163          501 YIF----EGHESPVYSICPHHKENIQFIFSTATD---------GKIKAWLYDNLGSRVDYDAP---------GHSSTMMA  558 (1134)
Q Consensus       501 ~~~----~~h~~~v~~~~~~~~~~~~~l~s~s~d---------g~i~vwd~~~~~~~~~~~~~---------~~~v~~~~  558 (1134)
                      ..-    ......-....+  ..++..++.++.+         ..+..||.............         ...-.++.
T Consensus       328 ~~~~~~~~p~~~~~~~~~~--~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~  405 (656)
T 1k3i_A          328 SLPNAKVNPMLTADKQGLY--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM  405 (656)
T ss_dssp             EETTSCSGGGCCCCTTGGG--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred             eCCCcccccccccccccee--ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence            320    000000000011  1222344445444         35677887665422211111         11123344


Q ss_pred             EC-cCCCEEEEEecCCC----CC---eEEEEEeCCCCeeEEEe--cCCCCCceEEEEEcCCCCEEEEEeCC---------
Q 001163          559 YS-ADGARLFSCGTNKE----GE---SYLVEWNESEGAVKRTY--HGLGKRSVGVVQFDTTKNRFLAAGDE---------  619 (1134)
Q Consensus       559 ~s-~~~~~l~~~~~~~~----~~---~~i~~wd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d---------  619 (1134)
                      +. .+++.++.++.+..    ..   ..+.+||..+.......  .........+++..|+++.++.|+.+         
T Consensus       406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~  485 (656)
T 1k3i_A          406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST  485 (656)
T ss_dssp             EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred             ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCC
Confidence            43 36777777764321    01   15888998887665543  22222123455677899999998854         


Q ss_pred             --CeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEEC
Q 001163          620 --FMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTN  662 (1134)
Q Consensus       620 --g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~  662 (1134)
                        ..+.+||..+.+....-..........+..+.|+|++++.|+.
T Consensus       486 ~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          486 PVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             BCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             cccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence              4689999987664432211111112234566789999999885

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.43  E-value=0.00015  Score=78.44  Aligned_cols=226  Identities=12%  Similarity=0.007  Sum_probs=137.6

Q ss_pred             ccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCC
Q 001163          777 MRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDS  856 (1134)
Q Consensus       777 ~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~  856 (1134)
                      .....++++++|+.+++-..++.|..|+...                      +......     .......++++++|+
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g----------------------~~~~~~~-----~~~~p~gia~~~dG~   84 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG----------------------NQQIHAT-----VEGKVSGLAFTSNGD   84 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTC----------------------CEEEEEE-----CSSEEEEEEECTTSC
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCC----------------------ceEEEEe-----CCCCceeEEEcCCCc
Confidence            4567899999999766666778887775331                      1111100     124578899999999


Q ss_pred             eEEEee-CC--eEEEEEccCCeEEEEecC-CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccce--EEEe--------
Q 001163          857 YVMSAS-GG--KISLFNMMTFKTMTTFMP-PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE--VKTK--------  922 (1134)
Q Consensus       857 ~la~~s-dg--~i~lwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~--~~~~--------  922 (1134)
                      ++++.. .+  .|..+|..+++....... .......++..+ ++..+++-..++.|+++|..+++  ....        
T Consensus        85 l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~  163 (306)
T 2p4o_A           85 LVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSN  163 (306)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSS
T ss_pred             EEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCcccccc
Confidence            766554 22  477777777775433321 222345566666 66556655568889999987543  2110        


Q ss_pred             ccCccCceEEEEEeeCCCEEEE-EeCCCcEEEEECCC-CccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-Eeece
Q 001163          923 LKGHQKRITGLAFSNTLNVLVS-SGADSQLCVWSTDG-WEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQ  999 (1134)
Q Consensus       923 l~~h~~~V~~l~~s~d~~~l~s-~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~  999 (1134)
                      ....-.....+  ++|++.|+. -...+.|..++++. ++......+...       .....++++++|++.++ ...+.
T Consensus       164 ~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-------~~P~gi~vd~dG~l~va~~~~~~  234 (306)
T 2p4o_A          164 SESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-------TNIDDFAFDVEGNLYGATHIYNS  234 (306)
T ss_dssp             TTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-------CCCSSEEEBTTCCEEEECBTTCC
T ss_pred             ccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-------CCCCCeEECCCCCEEEEeCCCCe
Confidence            01111234455  888876654 45577899999875 332222222111       12456999999987666 35688


Q ss_pred             EEEEeCCCcccce--eeccCCCccCEEEEEEc---cCCCEEEEEecCC
Q 001163         1000 IAIYEAPKLECLK--QFVPREASGPITHATYS---CDSQSIYVAFEEG 1042 (1134)
Q Consensus      1000 i~iwd~~~~~~~~--~~~~~~h~~~v~~~~~s---~dg~~l~s~s~Dg 1042 (1134)
                      |.++|.. ++...  .+.  ......++++|.   +|++.|+.++..+
T Consensus       235 V~~~~~~-G~~~~~~~~~--~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          235 VVRIAPD-RSTTIIAQAE--QGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             EEEECTT-CCEEEEECGG--GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             EEEECCC-CCEEEEeecc--cccCCceEEEEecccCCCCEEEEECCCC
Confidence            9999975 55422  222  113568999999   8988887766543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.40  E-value=9.2e-05  Score=74.79  Aligned_cols=211  Identities=10%  Similarity=0.087  Sum_probs=136.5

Q ss_pred             eEEEEecCCCC--CeEEEEEcCCCCcEEEEEeCCC--cEEEEEcccceEEEeccCccCceEEEEEeeCCCEEE-EEeCCC
Q 001163          875 KTMTTFMPPPP--AATFLAFHPQDNNIIAIGMEDS--SIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLV-SSGADS  949 (1134)
Q Consensus       875 ~~~~~~~~~~~--~v~~l~~sp~~~~~la~g~~dg--~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~-s~s~Dg  949 (1134)
                      +.+.++. |+.  -...+.|++  +.++.+.+.+|  .|+.+|+.+++.+........ ........++..|. ..-.++
T Consensus        10 ~v~~~~p-hd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~   85 (243)
T 3mbr_X           10 RVVKRYP-HDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNH   85 (243)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSS
T ss_pred             EEEEEcC-CCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCC
Confidence            4556663 553  467899985  56666666654  899999999999887754332 33333333444444 445688


Q ss_pred             cEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-eeceEEEEeCCCcccceeeccCCCc---cCEEE
Q 001163          950 QLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLECLKQFVPREAS---GPITH 1025 (1134)
Q Consensus       950 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~---~~v~~ 1025 (1134)
                      .+.+||.++.+....  +..  +..       ...+.+|++.|+++ .+++|.++|..+.+.+..+....+.   ..+..
T Consensus        86 ~v~v~D~~tl~~~~t--i~~--~~~-------Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNe  154 (243)
T 3mbr_X           86 EGFVYDLATLTPRAR--FRY--PGE-------GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNE  154 (243)
T ss_dssp             EEEEEETTTTEEEEE--EEC--SSC-------CCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred             EEEEEECCcCcEEEE--EeC--CCC-------ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccccee
Confidence            999999998663331  221  111       13445677777775 4678999999999988887753332   34456


Q ss_pred             EEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCC----CCCCceeEEEEecCCCCCEEEEEecCCcEEEEeC
Q 001163         1026 ATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTN----PSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEP 1101 (1134)
Q Consensus      1026 ~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~----h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~ 1101 (1134)
                      +.+. +|+..+..-.+..|.+.|..+|+.+..+..+...+..    +...-..-.++|+|+...++++|-.--.++--.+
T Consensus       155 Le~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~~  233 (243)
T 3mbr_X          155 LEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIRL  233 (243)
T ss_dssp             EEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred             eEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEEE
Confidence            6665 7776655556789999999999999888755433322    1111123456999976677777776665554444

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.40  E-value=5.9e-05  Score=82.46  Aligned_cols=252  Identities=9%  Similarity=0.009  Sum_probs=145.3

Q ss_pred             cEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCC------CCCCCCeeEEEE
Q 001163          778 RVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISD------TNPEDAVPCFAL  851 (1134)
Q Consensus       778 ~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~------~~h~~~v~~v~~  851 (1134)
                      ...++++.++|+.+.++..++.|..|+......            ..|.............+      ......+..+++
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~   87 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF------------VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISY   87 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCE------------EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCce------------EEEecccccccccccccccchhccccCCCCceEEE
Confidence            345778899998788888888888886542211            00100000000000000      001134688999


Q ss_pred             cC-CCCeEEEeeCCeEEEEEccCCeEEEEe---cC-CCCCeEEEEEcCCCCcEEEEEeC-----------------CCcE
Q 001163          852 SK-NDSYVMSASGGKISLFNMMTFKTMTTF---MP-PPPAATFLAFHPQDNNIIAIGME-----------------DSSI  909 (1134)
Q Consensus       852 s~-dg~~la~~sdg~i~lwd~~~~~~~~~~---~~-~~~~v~~l~~sp~~~~~la~g~~-----------------dg~i  909 (1134)
                      ++ +|+++++...+.|..+|..++......   .+ .......+++.+.+|.+.++-..                 ++.|
T Consensus        88 ~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v  167 (322)
T 2fp8_A           88 NLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRL  167 (322)
T ss_dssp             ETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEE
T ss_pred             cCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceE
Confidence            97 666555544566888887765422211   11 11346789998833555554322                 3678


Q ss_pred             EEEEcccceEEEeccCccCceEEEEEeeCCCEEEEE-eCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCC
Q 001163          910 QIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSS-GADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLD  988 (1134)
Q Consensus       910 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~-s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d  988 (1134)
                      ..||..+++...... .-.....++|+++++.|+.+ ..++.|.+|++..........+....      . ...++++++
T Consensus       168 ~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~------g-P~gi~~d~~  239 (322)
T 2fp8_A          168 IKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIP------N-PGNIKRNAD  239 (322)
T ss_dssp             EEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECS------S-EEEEEECTT
T ss_pred             EEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCC------C-CCCeEECCC
Confidence            888887776433222 12334679999999866554 56688999998864322222222111      1 567899999


Q ss_pred             CCEEEEE-e----------eceEEEEeCCCcccceeeccCC-C-ccCEEEEEEccCCCEEEEEecCCcEEEeecCC
Q 001163          989 QTHLLAV-H----------ETQIAIYEAPKLECLKQFVPRE-A-SGPITHATYSCDSQSIYVAFEEGSVGVLTAST 1051 (1134)
Q Consensus       989 g~~l~~~-~----------d~~i~iwd~~~~~~~~~~~~~~-h-~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~ 1051 (1134)
                      |++.++. .          .+.|..+|.. ++.+..+.... . -..++++++ .+|++.++....+.|.++++..
T Consensus       240 G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          240 GHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             SCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             CCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence            9876664 3          4678888874 66666554221 1 235667776 4666666666778899998764

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.40  E-value=0.00032  Score=75.90  Aligned_cols=239  Identities=9%  Similarity=0.055  Sum_probs=142.8

Q ss_pred             CCceeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEE
Q 001163          345 LPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRV  424 (1134)
Q Consensus       345 ~~~~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  424 (1134)
                      .+.+.+..+........++|+++|+ |+++-..++.|..||...+. ..     .+.               ....+..+
T Consensus        20 ~~~~~~~~~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~~-~~-----~~~---------------~~~~p~gi   77 (306)
T 2p4o_A           20 APAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQ-QI-----HAT---------------VEGKVSGL   77 (306)
T ss_dssp             CCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCE-EE-----EEE---------------CSSEEEEE
T ss_pred             CCceEeEeCCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCCce-EE-----EEe---------------CCCCceeE
Confidence            3455666676557888999999998 66676678899999987542 11     111               12468899


Q ss_pred             EEcCCCCEEEEEeCC-C-EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCce-eE
Q 001163          425 MWSPDGTLFGVAYSK-H-IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK-QY  501 (1134)
Q Consensus       425 ~~spd~~~las~s~d-g-~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~-~~  501 (1134)
                      +++++|+++++.... + .|..+|..+++.. ....+. .......++..+++.  .+++-..++.|.++|..+++. +.
T Consensus        78 a~~~dG~l~vad~~~~~~~v~~~d~~~g~~~-~~~~~~-~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~~v~  153 (306)
T 2p4o_A           78 AFTSNGDLVATGWNADSIPVVSLVKSDGTVE-TLLTLP-DAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIW  153 (306)
T ss_dssp             EECTTSCEEEEEECTTSCEEEEEECTTSCEE-EEEECT-TCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEcCCCcEEEEeccCCcceEEEEcCCCCeEE-EEEeCC-CccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcEeEE
Confidence            999999976665443 2 4666777777632 222221 122334555555444  455555688999999776532 21


Q ss_pred             Eec---------CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCc---eeeecCCCCCeeEEEECcCCCEEEEE
Q 001163          502 IFE---------GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS---RVDYDAPGHSSTMMAYSADGARLFSC  569 (1134)
Q Consensus       502 ~~~---------~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~  569 (1134)
                      ...         +.-...+.+  +++. +.++++-...+.|..++++....   ...+. .......++++++|+..++.
T Consensus       154 ~~~~~~~~~~~~~~~~~pngi--s~dg-~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~  229 (306)
T 2p4o_A          154 LEHPMLARSNSESVFPAANGL--KRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGAT  229 (306)
T ss_dssp             EECGGGSCSSTTCCSCSEEEE--EEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEEC
T ss_pred             EECCccccccccCCCCcCCCc--CcCC-CEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEe
Confidence            111         111234445  3332 24556666778999999874211   11111 11235678999999876654


Q ss_pred             ecCCCCCeEEEEEeCCCCeeEE--EecCCCCCceEEEEEc---CCCCEEEEEeCC
Q 001163          570 GTNKEGESYLVEWNESEGAVKR--TYHGLGKRSVGVVQFD---TTKNRFLAAGDE  619 (1134)
Q Consensus       570 ~~~~~~~~~i~~wd~~~~~~~~--~~~~~~~~~v~~~~~~---~~~~~l~~~~~d  619 (1134)
                      ..    ...|.++|.. ++...  .+...- ....+++|.   ++++.|++++..
T Consensus       230 ~~----~~~V~~~~~~-G~~~~~~~~~~~~-~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          230 HI----YNSVVRIAPD-RSTTIIAQAEQGV-IGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             BT----TCCEEEECTT-CCEEEEECGGGTC-TTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CC----CCeEEEECCC-CCEEEEeeccccc-CCceEEEEecccCCCCEEEEECCC
Confidence            32    3358999975 65533  233221 257889998   788777776643

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.39  E-value=0.00012  Score=86.37  Aligned_cols=204  Identities=12%  Similarity=0.001  Sum_probs=121.6

Q ss_pred             CCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCC-------EEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEE
Q 001163          430 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGS-------VNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI  502 (1134)
Q Consensus       430 ~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~-------V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~  502 (1134)
                      +..|.+++.++.|.-+|..+|+.+-... .......       -..++.  .+.  .++.++.|+.|.-+|..+|+.+..
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~-~~~~~~~~~~~~~~~~g~a~--~~~--~v~~~t~dg~l~AlD~~TG~~~W~  142 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYN-HRLPDDIRPCCDVVNRGAAI--YGD--KVFFGTLDASVVALNKNTGKVVWK  142 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEE-CCCCTTCCCSSCSCCCCCEE--ETT--EEEEEETTTEEEEEESSSCCEEEE
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEc-CCCCcccccccccCCCccEE--ECC--EEEEEeCCCEEEEEECCCCCEEee
Confidence            4455555554448889999998765432 1111000       012222  234  477888899999999999999887


Q ss_pred             ecCCCc----CEEE-Eecccc-CCcc-EEEEecC------CCcEEEEecCCCCceeeecCCCC-----------------
Q 001163          503 FEGHES----PVYS-ICPHHK-ENIQ-FIFSTAT------DGKIKAWLYDNLGSRVDYDAPGH-----------------  552 (1134)
Q Consensus       503 ~~~h~~----~v~~-~~~~~~-~~~~-~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~-----------------  552 (1134)
                      +.....    .+.+ -.+... .+++ .+++++.      ++.|..+|..+++.+........                 
T Consensus       143 ~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g  222 (582)
T 1flg_A          143 KKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVK  222 (582)
T ss_dssp             EECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTT
T ss_pred             ecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccc
Confidence            653321    1110 011111 1222 5666553      78899999888776665432110                 


Q ss_pred             ------------------------CeeEEEECcCCCEEEEEecCC----------C----------CCeEEEEEeCCCCe
Q 001163          553 ------------------------SSTMMAYSADGARLFSCGTNK----------E----------GESYLVEWNESEGA  588 (1134)
Q Consensus       553 ------------------------~v~~~~~s~~~~~l~~~~~~~----------~----------~~~~i~~wd~~~~~  588 (1134)
                                              .-..+++.|+...++.+..+.          .          -...|..+|..+|+
T Consensus       223 ~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~  302 (582)
T 1flg_A          223 APSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGE  302 (582)
T ss_dssp             CTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCC
T ss_pred             cccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCC
Confidence                                    002356667777777665321          1          11579999999999


Q ss_pred             eEEEecCCCC--------CceEEEEEc-CCCC---EEEEEeCCCeEEEEEcCCCceeEEEec
Q 001163          589 VKRTYHGLGK--------RSVGVVQFD-TTKN---RFLAAGDEFMIKFWDMDNVNLLASIDA  638 (1134)
Q Consensus       589 ~~~~~~~~~~--------~~v~~~~~~-~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~  638 (1134)
                      .+..+.....        .....+... .+|+   .++.++.+|.++++|..+|+++.....
T Consensus       303 ~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~  364 (582)
T 1flg_A          303 VKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPF  364 (582)
T ss_dssp             EEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred             EEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccccc
Confidence            9988754211        011112221 4563   678888999999999999999877654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.37  E-value=5.3e-05  Score=76.53  Aligned_cols=188  Identities=10%  Similarity=0.118  Sum_probs=126.3

Q ss_pred             CCCeeEEEEcCCCCeEEEee-C--CeEEEEEccCCeEEEEecCCCCC-eEEEEEcCCCCcEEEEEeCCCcEEEEEcccce
Q 001163          843 EDAVPCFALSKNDSYVMSAS-G--GKISLFNMMTFKTMTTFMPPPPA-ATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE  918 (1134)
Q Consensus       843 ~~~v~~v~~s~dg~~la~~s-d--g~i~lwd~~~~~~~~~~~~~~~~-v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~  918 (1134)
                      ..-...+.|+. +.+..+.+ +  +.|+.+|+.+++.+..+...... --.+++.  ++++.+....++.+.+||..+.+
T Consensus        20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~   96 (243)
T 3mbr_X           20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT   96 (243)
T ss_dssp             TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred             ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence            34566899986 45444444 3  47999999999999987643322 2345554  45666666778999999999999


Q ss_pred             EEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-ee
Q 001163          919 VKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HE  997 (1134)
Q Consensus       919 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d  997 (1134)
                      .+.++.... .-..+  .+|++.|+.+..++.|.++|..+.+....  +.+...... -..+.-+.+. +|+..+.. .+
T Consensus        97 ~~~ti~~~~-~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~--I~V~~~g~~-~~~lNeLe~~-~G~lyanvw~s  169 (243)
T 3mbr_X           97 PRARFRYPG-EGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGS--IKVTAGGRP-LDNLNELEWV-NGELLANVWLT  169 (243)
T ss_dssp             EEEEEECSS-CCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEE--EECEETTEE-CCCEEEEEEE-TTEEEEEETTT
T ss_pred             EEEEEeCCC-CceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEE--EEEccCCcc-cccceeeEEe-CCEEEEEECCC
Confidence            998887533 22344  46777777777788999999988664432  222211110 0224455555 66644444 56


Q ss_pred             ceEEEEeCCCcccceeeccCC-----------CccCEEEEEEccCCCEEEEEec
Q 001163          998 TQIAIYEAPKLECLKQFVPRE-----------ASGPITHATYSCDSQSIYVAFE 1040 (1134)
Q Consensus       998 ~~i~iwd~~~~~~~~~~~~~~-----------h~~~v~~~~~s~dg~~l~s~s~ 1040 (1134)
                      ..|.+.|..+++.+..+...+           -..-...|+++|+++.|+..+.
T Consensus       170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            799999999999988876321           1235688999999888777664

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.29  E-value=0.0012  Score=71.99  Aligned_cols=278  Identities=10%  Similarity=0.038  Sum_probs=152.4

Q ss_pred             ccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCC
Q 001163          777 MRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDS  856 (1134)
Q Consensus       777 ~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~  856 (1134)
                      ..+.++.|.+++..+++ +.+|.+... .+..              +-|..     +.....  .....+.++.+++ +.
T Consensus        36 ~~~~~v~~~~~~~~~~~-G~~g~i~~s-~DgG--------------~tW~~-----~~~~~~--~~~~~~~~i~~~~-~~   91 (327)
T 2xbg_A           36 ATILDMSFIDRHHGWLV-GVNATLMET-RDGG--------------QTWEP-----RTLVLD--HSDYRFNSVSFQG-NE   91 (327)
T ss_dssp             SCEEEEEESSSSCEEEE-ETTTEEEEE-SSTT--------------SSCEE-----CCCCCS--CCCCEEEEEEEET-TE
T ss_pred             CcEEEEEECCCCcEEEE-cCCCeEEEe-CCCC--------------CCCeE-----CCCCCC--CCCccEEEEEecC-Ce
Confidence            46889999887776664 456654321 1110              01111     110011  1245688899986 55


Q ss_pred             eEEEeeCCeEEEEEccCCeEEEEec---CCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEE-EeccCccCceEE
Q 001163          857 YVMSASGGKISLFNMMTFKTMTTFM---PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVK-TKLKGHQKRITG  932 (1134)
Q Consensus       857 ~la~~sdg~i~lwd~~~~~~~~~~~---~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~-~~l~~h~~~V~~  932 (1134)
                      .++++..+.|.. ..+.++.-....   ...+.+..+.+.+ ++.+++++ .+|.|.. ..+.|+.- .....+...+..
T Consensus        92 ~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~  167 (327)
T 2xbg_A           92 GWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRN  167 (327)
T ss_dssp             EEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEE
T ss_pred             EEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEE
Confidence            666665675443 233343333322   2335577888876 66666655 4554432 22223221 122345567899


Q ss_pred             EEEeeCCCEEEEEeCCCcEEE-EECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccc
Q 001163          933 LAFSNTLNVLVSSGADSQLCV-WSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECL 1011 (1134)
Q Consensus       933 l~~s~d~~~l~s~s~Dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~ 1011 (1134)
                      +++.+++.+++.+. ++.+.. +|- .++  .+..+...  ..   ..+..++++++++.++++.+|.+++.+...++..
T Consensus       168 ~~~~~~~~~~~~g~-~G~~~~S~d~-gG~--tW~~~~~~--~~---~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW  238 (327)
T 2xbg_A          168 LNRSPSGEYVAVSS-RGSFYSTWEP-GQT--AWEPHNRT--TS---RRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENW  238 (327)
T ss_dssp             EEECTTSCEEEEET-TSSEEEEECT-TCS--SCEEEECC--SS---SCEEEEEECTTSCEEEEETTTEEEEEETTEEEEE
T ss_pred             EEEcCCCcEEEEEC-CCcEEEEeCC-CCC--ceeECCCC--CC---CccceeEECCCCCEEEEeCCceEEEecCCCCCee
Confidence            99999988877665 444443 332 111  11222211  11   3578899999999888888888877753434443


Q ss_pred             eeeccC--CCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEE
Q 001163         1012 KQFVPR--EASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFAL 1089 (1134)
Q Consensus      1012 ~~~~~~--~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s 1089 (1134)
                      ..+...  .+...+.++++.+++.+++++. ++.| ++..+.|+.-..+....    .+...++.+  .|.+  +..+++
T Consensus       239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~----~~~~~~~~v--~~~~--~~~~~~  308 (327)
T 2xbg_A          239 GELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVK----KVPSNFYKI--LFFS--PDQGFI  308 (327)
T ss_dssp             CCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGT----TSSSCCCEE--EEEE--TTEEEE
T ss_pred             EeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccC----CCCCCeEEE--EEEC--CCceEE
Confidence            333211  1234688999998888777654 6766 45556665443332111    112345555  4433  456778


Q ss_pred             EecCCcEEEEeC
Q 001163         1090 GLTDGGVYIIEP 1101 (1134)
Q Consensus      1090 ~~~Dg~v~vW~~ 1101 (1134)
                      ++.+|.|.-++-
T Consensus       309 ~G~~G~i~~~~~  320 (327)
T 2xbg_A          309 LGQKGILLRYVT  320 (327)
T ss_dssp             ECSTTEEEEECC
T ss_pred             EcCCceEEEEcC
Confidence            889998776653

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.25  E-value=0.0027  Score=69.78  Aligned_cols=248  Identities=12%  Similarity=0.000  Sum_probs=149.1

Q ss_pred             CCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEE
Q 001163          357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA  436 (1134)
Q Consensus       357 ~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~  436 (1134)
                      +..+|.+..+++ +|+++  ....|+..++........                   .. ....+..++|++.+..|...
T Consensus        34 d~~~C~~~~~~~-~ll~~--~~~~I~~i~~~g~~~~~~-------------------~~-~~~~~~~l~~d~~~~~ly~~   90 (349)
T 3v64_C           34 DRRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTLL-------------------LN-NLENAIALDFHHRRELVFWS   90 (349)
T ss_dssp             TSSCEEESSSCC-EEEEE--CBSCEEEECTTSCCEEEE-------------------EC-SCSCEEEEEEETTTTEEEEE
T ss_pred             CCCcccccccCc-eeEee--cccceEEEeCCCCeeEEe-------------------ec-CCCceEEEEEeccccEEEEE
Confidence            345677777744 35443  334587778765432210                   11 23458899999866655554


Q ss_pred             -eCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEec
Q 001163          437 -YSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICP  515 (1134)
Q Consensus       437 -s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~  515 (1134)
                       ...+.|..++..++....   .+.........+++.+.+.. ++++-...+.|.+.++........+...-.....+++
T Consensus        91 D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iav  166 (349)
T 3v64_C           91 DVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIAL  166 (349)
T ss_dssp             ETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEE
T ss_pred             eccCCceEEEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEE
Confidence             567889999988764222   12222334578899986664 4566666789999997654433333334455678888


Q ss_pred             cccCCccEEEEecCC-CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEec
Q 001163          516 HHKENIQFIFSTATD-GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH  594 (1134)
Q Consensus       516 ~~~~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~  594 (1134)
                      ++.. +.++++-..+ +.|..++++.................++++|++..|+.+-.   +...|..+|+........+.
T Consensus       167 dp~~-g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~~  242 (349)
T 3v64_C          167 HPME-GTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVIS  242 (349)
T ss_dssp             ETTT-TEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEC
T ss_pred             ecCc-CeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEEe
Confidence            6533 3555555555 78888887754333333223345688999998888877643   24579999986543333333


Q ss_pred             CCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Q 001163          595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID  637 (1134)
Q Consensus       595 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  637 (1134)
                      ... .....+++. .+..+++-...+.|..++..+|+....+.
T Consensus       243 ~~~-~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          243 QGL-PHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             SSC-SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCC-CCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence            222 245667773 34344444467788888866666666554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.23  E-value=0.0012  Score=71.52  Aligned_cols=206  Identities=9%  Similarity=-0.033  Sum_probs=128.8

Q ss_pred             CCCeeEEEEcCCCCeEEEee--CCeEEEEEccC----CeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEccc
Q 001163          843 EDAVPCFALSKNDSYVMSAS--GGKISLFNMMT----FKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV  916 (1134)
Q Consensus       843 ~~~v~~v~~s~dg~~la~~s--dg~i~lwd~~~----~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~  916 (1134)
                      ...+..++|++++..|..+.  ++.|..+++.+    ......+.........+++.+.++.+.++-...+.|.++++..
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g  108 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence            34578999998877776665  58899999876    2222223323345688999874555666666788999999875


Q ss_pred             ceEEEeccCccCceEEEEEeeCCCEEEEEeC-C-CcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE
Q 001163          917 DEVKTKLKGHQKRITGLAFSNTLNVLVSSGA-D-SQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA  994 (1134)
Q Consensus       917 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~  994 (1134)
                      ......+...-.....+++.|.+..|+.+.. . +.|...+++....   ..+ .....    .....+++++++..|..
T Consensus       109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~---~~~-~~~~~----~~P~gla~d~~~~~lY~  180 (316)
T 1ijq_A          109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSL-VTENI----QWPNGITLDLLSGRLYW  180 (316)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE---EEE-ECSSC----SCEEEEEEETTTTEEEE
T ss_pred             CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe---EEE-EECCC----CCceEEEEeccCCEEEE
Confidence            4332223323356789999986666555443 2 6788888765321   111 11111    34688999998888777


Q ss_pred             E--eeceEEEEeCCCcccceeeccC-CCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeec
Q 001163          995 V--HETQIAIYEAPKLECLKQFVPR-EASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRI 1058 (1134)
Q Consensus       995 ~--~d~~i~iwd~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~ 1058 (1134)
                      +  ..+.|..+|... .....+... ..-.....+++. .+.++++-...+.|..++..+|+....+
T Consensus       181 ~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          181 VDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL  245 (316)
T ss_dssp             EETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EECCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence            5  457899999874 333333211 123456778884 4555556666788999998777765444

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.23  E-value=7.2e-05  Score=92.01  Aligned_cols=195  Identities=10%  Similarity=0.039  Sum_probs=110.8

Q ss_pred             CeeEEEEc-CCCCeEEEee--CC----eEEEEEccCC-eEEEE-ecCCCCCeEEEEEcCCCCcEEEEEeCC-----CcEE
Q 001163          845 AVPCFALS-KNDSYVMSAS--GG----KISLFNMMTF-KTMTT-FMPPPPAATFLAFHPQDNNIIAIGMED-----SSIQ  910 (1134)
Q Consensus       845 ~v~~v~~s-~dg~~la~~s--dg----~i~lwd~~~~-~~~~~-~~~~~~~v~~l~~sp~~~~~la~g~~d-----g~i~  910 (1134)
                      .+...+|| |||++||...  +|    +|+++|+.++ +.+.. +.   .....++|+| |++.|+....|     ..|+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~  250 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGP-DHTSLFYVTKDETLRENKVW  250 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECS-STTEEEEEEECTTCCEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEec-CCCEEEEEEECCCCCCCEEE
Confidence            67789999 9999998765  23    4999999988 63211 11   1134689999 77777766654     3688


Q ss_pred             EEEcccceE--EEecc-CccCceEEEEEeeCCCEEEEEeC---CCcEEEEECCCCccccceeeeecCCCCCCCCCceEEE
Q 001163          911 IYNVRVDEV--KTKLK-GHQKRITGLAFSNTLNVLVSSGA---DSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQ  984 (1134)
Q Consensus       911 iwd~~~~~~--~~~l~-~h~~~V~~l~~s~d~~~l~s~s~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~  984 (1134)
                      ++++.+++.  ...+. .+..-...+.|||||++|+..+.   ...|.++|+.++.... ....+..+..   .....+.
T Consensus       251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~-~~~~l~~~~~---~~~~s~~  326 (751)
T 2xe4_A          251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHN-TLEIVRPREK---GVRYDVQ  326 (751)
T ss_dssp             EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCC-CEEESSCCCT---TCCEEEE
T ss_pred             EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCc-eeEEeecCCC---CceEEEe
Confidence            888876531  22222 22334668899999999886653   3468888988752111 0012222211   2233444


Q ss_pred             EcCCCCEEEE-Eee-----ceEEEEeCCCccccee-eccCCCccCEEEEEEccCCCEEEEEecCCcE--EEeec
Q 001163          985 FHLDQTHLLA-VHE-----TQIAIYEAPKLECLKQ-FVPREASGPITHATYSCDSQSIYVAFEEGSV--GVLTA 1049 (1134)
Q Consensus       985 fs~dg~~l~~-~~d-----~~i~iwd~~~~~~~~~-~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i--~vwd~ 1049 (1134)
                      |+. |..|+. +..     ..|..+|+.++..... +........+..+.+. ++.++++...|+..  .++++
T Consensus       327 ~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          327 MHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             eee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            443 555544 432     2577777765322233 3311212244555554 33445667777764  45554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.22  E-value=0.0024  Score=69.05  Aligned_cols=232  Identities=8%  Similarity=-0.006  Sum_probs=141.2

Q ss_pred             EEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCC---CceeE-EecCCC
Q 001163          432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT---GTKQY-IFEGHE  507 (1134)
Q Consensus       432 ~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~---~~~~~-~~~~h~  507 (1134)
                      +|+.+.. ..|+..|+.+.+...    +-........++|++++.. ++++-..++.|..+++..   +.... .+...-
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~~~----~~~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~   76 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI   76 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEE----EECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred             EEEEECC-CeEEEEECCCcceEe----hhcCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence            3444433 348888988765332    2223456789999987764 455666678999999876   12222 232222


Q ss_pred             cCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC
Q 001163          508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG  587 (1134)
Q Consensus       508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~  587 (1134)
                      .....+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+.+...  ....|...++.. 
T Consensus        77 ~~p~glavd~~-~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~--~~~~I~~~~~dG-  152 (316)
T 1ijq_A           77 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNG-  152 (316)
T ss_dssp             SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTS-
T ss_pred             CCcCEEEEeec-CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC--CCCeEEEEcCCC-
Confidence            34467777543 33566666778899999987544333333334467899999977777665432  125688888753 


Q ss_pred             eeEEEecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcE
Q 001163          588 AVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGI  666 (1134)
Q Consensus       588 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i  666 (1134)
                      .....+....-.....+++++++..|+.+. ..+.|..+|++...................+++. .+.++++-...+.|
T Consensus       153 ~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V  231 (316)
T 1ijq_A          153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI  231 (316)
T ss_dssp             CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred             CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeE
Confidence            333333222223577899999888877776 6679999999754333333322222344577775 35566666667888


Q ss_pred             EEEEccCC
Q 001163          667 KILANADG  674 (1134)
Q Consensus       667 ~iw~~~~~  674 (1134)
                      ..++..++
T Consensus       232 ~~~~~~~g  239 (316)
T 1ijq_A          232 FSANRLTG  239 (316)
T ss_dssp             EEEETTTC
T ss_pred             EEEeCCCC
Confidence            88887666

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.21  E-value=0.0019  Score=72.05  Aligned_cols=247  Identities=12%  Similarity=-0.000  Sum_probs=149.1

Q ss_pred             CeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE-EE
Q 001163          358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG-VA  436 (1134)
Q Consensus       358 ~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la-s~  436 (1134)
                      .-+|.+..+.+ +|+++  ....|+..++..+....                    +......+..++|++.+..|. +-
T Consensus        78 ~~~C~~~~~~~-~l~~~--~~~~I~~i~~~~~~~~~--------------------~~~~~~~~~gl~~d~~~~~ly~~D  134 (386)
T 3v65_B           78 RRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTL--------------------LLNNLENAIALDFHHRRELVFWSD  134 (386)
T ss_dssp             SSCEEECSSCC-EEEEE--CBSCEEEECTTSCCCEE--------------------EECSCSCEEEEEEETTTTEEEEEE
T ss_pred             CCeECCccccc-eeEee--cCccceeeccCCCcEEE--------------------EecCCCccEEEEEecCCCeEEEEe
Confidence            34466666633 34433  33568888887654322                    111234688999998655555 44


Q ss_pred             eCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEecc
Q 001163          437 YSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPH  516 (1134)
Q Consensus       437 s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~  516 (1134)
                      ...+.|..++..++....   .+.........+++.+.+.. ++++-...+.|.+.++........+...-.....++++
T Consensus       135 ~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavd  210 (386)
T 3v65_B          135 VTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALH  210 (386)
T ss_dssp             TTTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEE
T ss_pred             CCCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEE
Confidence            567889999988764222   12222234567899886664 45666667789888876544333333334567788886


Q ss_pred             ccCCccEEEEecCC-CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecC
Q 001163          517 HKENIQFIFSTATD-GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG  595 (1134)
Q Consensus       517 ~~~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~  595 (1134)
                      +.. +.++++-... +.|..++++.................++++|++..|+.+-.   ....|..+|+........+..
T Consensus       211 p~~-g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~  286 (386)
T 3v65_B          211 PME-GTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQ  286 (386)
T ss_dssp             TTT-TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEECS
T ss_pred             cCC-CeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEEC
Confidence            543 3455555444 77888887754443333333345678999998888877642   245799999865433333332


Q ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Q 001163          596 LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID  637 (1134)
Q Consensus       596 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  637 (1134)
                      .. .....+++ ..+..+++-...+.|..++..+|+.+..+.
T Consensus       287 ~~-~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          287 GL-PHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             SC-SSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CC-CCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            22 24566777 334444444477888888877777666665

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.18  E-value=0.0001  Score=89.28  Aligned_cols=237  Identities=12%  Similarity=0.009  Sum_probs=128.1

Q ss_pred             CCeeEEEEcCCCCeEEEee--CCeEEEEEccCCeEEEEecCCCCC-eEEEEEcCCCCcEEEEEe-CC-----CcEEEEEc
Q 001163          844 DAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMPPPPA-ATFLAFHPQDNNIIAIGM-ED-----SSIQIYNV  914 (1134)
Q Consensus       844 ~~v~~v~~s~dg~~la~~s--dg~i~lwd~~~~~~~~~~~~~~~~-v~~l~~sp~~~~~la~g~-~d-----g~i~iwd~  914 (1134)
                      ....++++..+|++++.|+  ++.+.+||..+.+-...-..+... -.++++.+ ++++++.|+ .+     ..+.+||.
T Consensus       243 ~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~  321 (656)
T 1k3i_A          243 MFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSP  321 (656)
T ss_dssp             CSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEET
T ss_pred             CccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCC
Confidence            3345678889999999987  467999999876433222112222 23456666 788999988 44     47999999


Q ss_pred             ccceEEEe-----ccCccCceEEEEEeeCCCEEEEEeCCC---------cEEEEECCCCccccceeeeecCC-C--CCCC
Q 001163          915 RVDEVKTK-----LKGHQKRITGLAFSNTLNVLVSSGADS---------QLCVWSTDGWEKQASKFLTIPNG-R--TASA  977 (1134)
Q Consensus       915 ~~~~~~~~-----l~~h~~~V~~l~~s~d~~~l~s~s~Dg---------~i~iwd~~~~~~~~~~~~~~~~~-~--~~~~  977 (1134)
                      .+++-...     ....... ....+..+++..+.++.|+         .+..||..+..-..  ....... +  ....
T Consensus       322 ~t~~W~~~~~~~~~p~~~~~-~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~--~~~~~~~~~~~~~~~  398 (656)
T 1k3i_A          322 SSKTWTSLPNAKVNPMLTAD-KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK--SAGKRQSNRGVAPDA  398 (656)
T ss_dssp             TTTEEEEETTSCSGGGCCCC-TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE--EEEECEETTEECCCC
T ss_pred             CCCcceeCCCcccccccccc-ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceee--cCCccccccccCCCC
Confidence            87653321     0000000 0011223455555555443         46788887644211  1111100 0  0000


Q ss_pred             CCceEEEEcC-CCCEEEEE-eec-----------eEEEEeCCCcccceeeccCCCccC-EEEEEEccCCCEEEEEecC--
Q 001163          978 LADTRVQFHL-DQTHLLAV-HET-----------QIAIYEAPKLECLKQFVPREASGP-ITHATYSCDSQSIYVAFEE-- 1041 (1134)
Q Consensus       978 ~~v~~l~fs~-dg~~l~~~-~d~-----------~i~iwd~~~~~~~~~~~~~~h~~~-v~~~~~s~dg~~l~s~s~D-- 1041 (1134)
                      ..-.++.|.. ++++++.| .++           .|.+||..+..........-+... -.+++..+||++++.|+.+  
T Consensus       399 ~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~  478 (656)
T 1k3i_A          399 MCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRG  478 (656)
T ss_dssp             BTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBC
T ss_pred             CCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccC
Confidence            1234455543 67777774 321           688888877654332200111222 2345667899999999865  


Q ss_pred             ---------CcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEec
Q 001163         1042 ---------GSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLT 1092 (1134)
Q Consensus      1042 ---------g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~ 1092 (1134)
                               ..+.+||..+.+... +. ....+     +...-+....| |++.++.|+.
T Consensus       479 ~~~~~~~~~~~v~~ydp~t~~W~~-~~-~~~~~-----R~~hs~a~ll~-dg~v~v~GG~  530 (656)
T 1k3i_A          479 IPFEDSTPVFTPEIYVPEQDTFYK-QN-PNSIV-----RVYHSISLLLP-DGRVFNGGGG  530 (656)
T ss_dssp             CTTCCCSBCCCCEEEEGGGTEEEE-CC-CCSSC-----CCTTEEEEECT-TSCEEEEECC
T ss_pred             cCcCCCCcccceEEEcCCCCceee-cC-CCCCc-----cccccHhhcCC-CcEEEecCCC
Confidence                     468999998766432 22 11111     11111223346 7889999885

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.18  E-value=0.0019  Score=71.01  Aligned_cols=241  Identities=10%  Similarity=0.001  Sum_probs=148.2

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCce
Q 001163          420 SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK  499 (1134)
Q Consensus       420 ~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~  499 (1134)
                      ..+|.+..++ .+|+.+. ...|+..++.+.....   .+. ....+..++|++.+.. ++++-...+.|..+++..+..
T Consensus        35 ~~~C~~~~~~-~~ll~~~-~~~I~~i~~~g~~~~~---~~~-~~~~~~~l~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~  107 (349)
T 3v64_C           35 RRSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTL---LLN-NLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNV  107 (349)
T ss_dssp             SSCEEESSSC-CEEEEEC-BSCEEEECTTSCCEEE---EEC-SCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSC
T ss_pred             CCcccccccC-ceeEeec-ccceEEEeCCCCeeEE---eec-CCCceEEEEEeccccE-EEEEeccCCceEEEecCCCCc
Confidence            4456666664 3444443 3447777876654222   122 3345789999987664 455656678999999876654


Q ss_pred             eEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEE
Q 001163          500 QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYL  579 (1134)
Q Consensus       500 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i  579 (1134)
                      ...+.........+++.+. ++.++++-...+.|.+.+++.................+++.|.+..|+......  ...|
T Consensus       108 ~~~~~~~~~~p~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~--~~~I  184 (349)
T 3v64_C          108 EEVVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN--TPRI  184 (349)
T ss_dssp             EEEECSSCSCCCEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSS--SCEE
T ss_pred             eEEEeCCCCCccEEEEecC-CCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCC--CCEE
Confidence            4333322234456777543 335667777778999999875544444433344678999999777776654321  2568


Q ss_pred             EEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEE
Q 001163          580 VEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLA  658 (1134)
Q Consensus       580 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~  658 (1134)
                      ...++.... ...+....-.....++++|++..|+.+. ..+.|..+|++.......+...  ......+++ .++.+++
T Consensus       185 ~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~giav-~~~~ly~  260 (349)
T 3v64_C          185 EASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLYW  260 (349)
T ss_dssp             EEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEEE-ETTEEEE
T ss_pred             EEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC--CCCceEEEE-ECCEEEE
Confidence            888876433 3333222222568899998887777766 6678999998764433333322  234567777 3455555


Q ss_pred             EEECCCcEEEEEccCC
Q 001163          659 VSTNDNGIKILANADG  674 (1134)
Q Consensus       659 ~~~~dg~i~iw~~~~~  674 (1134)
                      +-...+.|..++..++
T Consensus       261 td~~~~~V~~~~~~~G  276 (349)
T 3v64_C          261 TDWHTKSINSANKFTG  276 (349)
T ss_dssp             EETTTTEEEEEETTTC
T ss_pred             ecCCCCeEEEEEccCC
Confidence            5556777877775555

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.17  E-value=0.0076  Score=65.51  Aligned_cols=282  Identities=9%  Similarity=-0.012  Sum_probs=148.6

Q ss_pred             ecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEE
Q 001163          354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF  433 (1134)
Q Consensus       354 ~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l  433 (1134)
                      .....+.+|.|.+++. ++++| .+|.| +...+.|+.-.....               ........+.+|.|++ +..+
T Consensus        33 ~~~~~~~~v~~~~~~~-~~~~G-~~g~i-~~s~DgG~tW~~~~~---------------~~~~~~~~~~~i~~~~-~~~~   93 (327)
T 2xbg_A           33 PTTATILDMSFIDRHH-GWLVG-VNATL-METRDGGQTWEPRTL---------------VLDHSDYRFNSVSFQG-NEGW   93 (327)
T ss_dssp             SCSSCEEEEEESSSSC-EEEEE-TTTEE-EEESSTTSSCEECCC---------------CCSCCCCEEEEEEEET-TEEE
T ss_pred             CCCCcEEEEEECCCCc-EEEEc-CCCeE-EEeCCCCCCCeECCC---------------CCCCCCccEEEEEecC-CeEE
Confidence            3456799999988777 44554 45654 334444542221000               0112345788999986 4444


Q ss_pred             EEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCcee-EEecCCCcCEEE
Q 001163          434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ-YIFEGHESPVYS  512 (1134)
Q Consensus       434 as~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~h~~~v~~  512 (1134)
                      + ++.++.|.. ..+.|+.-........+.+.+..+.+.+++.  .++.+ .++.|.. ..+.|+.- .....+...+..
T Consensus        94 ~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~  167 (327)
T 2xbg_A           94 I-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRN  167 (327)
T ss_dssp             E-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEE
T ss_pred             E-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEE
Confidence            4 455664433 3344443332211112445678888887775  45544 4554432 12234322 223345567888


Q ss_pred             EeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEE
Q 001163          513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRT  592 (1134)
Q Consensus       513 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~  592 (1134)
                      +.+.+  ++.+++.+...+..+-+|-....-..........+..+.+.++++.++.+. +    +.+++.+...++.-..
T Consensus       168 ~~~~~--~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-~----G~~~~s~~D~G~tW~~  240 (327)
T 2xbg_A          168 LNRSP--SGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-G----GKIAFSDPDNSENWGE  240 (327)
T ss_dssp             EEECT--TSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEET-T----TEEEEEETTEEEEECC
T ss_pred             EEEcC--CCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeC-C----ceEEEecCCCCCeeEe
Confidence            87754  446666665443333333211111111122344778889999988766542 2    2355553222332222


Q ss_pred             ecCC---CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecC-CCCCCcceEEEcCCCcEEEEEECCCcEEE
Q 001163          593 YHGL---GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD-GGLQASPCIRFNKEGILLAVSTNDNGIKI  668 (1134)
Q Consensus       593 ~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~l~~~~~dg~i~i  668 (1134)
                      +...   ....+..+.+.+++..++++ .+|.| .+..+.|+.-..+... .....+.++.|.+++. +++++.+|.|.-
T Consensus       241 ~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~  317 (327)
T 2xbg_A          241 LLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLR  317 (327)
T ss_dssp             CBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEE
T ss_pred             ccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEE
Confidence            2211   11257788898877655554 46766 4566666665555421 1134578888875554 556677887766


Q ss_pred             EE
Q 001163          669 LA  670 (1134)
Q Consensus       669 w~  670 (1134)
                      ++
T Consensus       318 ~~  319 (327)
T 2xbg_A          318 YV  319 (327)
T ss_dssp             EC
T ss_pred             Ec
Confidence            54

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.16  E-value=0.0016  Score=72.68  Aligned_cols=240  Identities=9%  Similarity=-0.024  Sum_probs=147.6

Q ss_pred             EEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCcee
Q 001163          421 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ  500 (1134)
Q Consensus       421 V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~  500 (1134)
                      -.|.+..+ ..+|+.+.. ..|+..++.++....    +......+..++|.+.+.. ++++-...+.|..+++..+...
T Consensus        79 ~~C~~~~~-~~~l~~~~~-~~I~~i~~~~~~~~~----~~~~~~~~~gl~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~~  151 (386)
T 3v65_B           79 RSCKALGP-EPVLLFANR-IDIRQVLPHRSEYTL----LLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNVE  151 (386)
T ss_dssp             SCEEECSS-CCEEEEECB-SCEEEECTTSCCCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCCEE
T ss_pred             CeECCccc-cceeEeecC-ccceeeccCCCcEEE----EecCCCccEEEEEecCCCe-EEEEeCCCCcEEEEecCCCCcE
Confidence            34555555 334444433 458888887654322    2223345889999987664 4556667789999998766543


Q ss_pred             EEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEE
Q 001163          501 YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLV  580 (1134)
Q Consensus       501 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~  580 (1134)
                      ..+.........+++.+. ++.++++-...+.|.+.+++.................+++.|.+..|+..-..  ....|.
T Consensus       152 ~~~~~~~~~p~glavd~~-~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~--~~~~I~  228 (386)
T 3v65_B          152 EVVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG--NTPRIE  228 (386)
T ss_dssp             EEECSSCSCCCCEEEETT-TTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECS--SSCEEE
T ss_pred             EEEeCCCCCccEEEEEeC-CCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccC--CCCEEE
Confidence            333322233455666543 33566777777888888887544444443333467889999988777765432  125688


Q ss_pred             EEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEE
Q 001163          581 EWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAV  659 (1134)
Q Consensus       581 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~  659 (1134)
                      .+++............ -.....++++|++..|+.+. ..+.|..+|+........+...  ......+++ .++.++++
T Consensus       229 r~~~dG~~~~~~~~~~-~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~giav-~~~~ly~t  304 (386)
T 3v65_B          229 ASSMDGSGRRIIADTH-LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLYWT  304 (386)
T ss_dssp             EEETTSCSCEEEECSS-CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS--CSSEEEEEE-ETTEEEEE
T ss_pred             EEeCCCCCcEEEEECC-CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC--CCCceEEEE-ECCEEEEe
Confidence            8887654333322222 22567899998877777766 6678999998754443333321  334567777 34556666


Q ss_pred             EECCCcEEEEEccCC
Q 001163          660 STNDNGIKILANADG  674 (1134)
Q Consensus       660 ~~~dg~i~iw~~~~~  674 (1134)
                      -...+.|..++..++
T Consensus       305 d~~~~~V~~~~~~~G  319 (386)
T 3v65_B          305 DWHTKSINSANKFTG  319 (386)
T ss_dssp             ETTTTEEEEEETTTC
T ss_pred             eCCCCeEEEEECCCC
Confidence            666788888876565

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.13  E-value=0.00036  Score=79.10  Aligned_cols=248  Identities=7%  Similarity=-0.025  Sum_probs=144.8

Q ss_pred             CeeEEEEcCC--CCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCC---C-cEEEEEcccc
Q 001163          845 AVPCFALSKN--DSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED---S-SIQIYNVRVD  917 (1134)
Q Consensus       845 ~v~~v~~s~d--g~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~d---g-~i~iwd~~~~  917 (1134)
                      ....++++|+  +..|..+. .+.|+.+|..++..... .........+++++ +++++++....   . .+...+...+
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence            3468999984  44455554 58899999987766544 33556689999999 77755544321   1 2333333222


Q ss_pred             eE-EEeccCccCceEEEEEee-CCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE
Q 001163          918 EV-KTKLKGHQKRITGLAFSN-TLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV  995 (1134)
Q Consensus       918 ~~-~~~l~~h~~~V~~l~~s~-d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~  995 (1134)
                      .. ...+. .-.....+++++ +|.+.++-..++.|+.++..++.... .......  .   .....++|+|+|++|.++
T Consensus       218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~-~~~~~~~--~---~~~~~ia~dpdG~~LYva  290 (433)
T 4hw6_A          218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE-EEVMMDT--K---GSNFHIVWHPTGDWAYII  290 (433)
T ss_dssp             TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE-EEEECSC--C---SSCEEEEECTTSSEEEEE
T ss_pred             eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE-EEeccCC--C---CCcccEEEeCCCCEEEEE
Confidence            11 01111 123346688999 67766676677889999988654211 1111111  1   123469999999977765


Q ss_pred             --eeceEEEEeCC--Ccccc--eeecc----CCC---------ccCEEEEEE---------ccCCCEEEEEecCCcEEEe
Q 001163          996 --HETQIAIYEAP--KLECL--KQFVP----REA---------SGPITHATY---------SCDSQSIYVAFEEGSVGVL 1047 (1134)
Q Consensus       996 --~d~~i~iwd~~--~~~~~--~~~~~----~~h---------~~~v~~~~~---------s~dg~~l~s~s~Dg~i~vw 1047 (1134)
                        ..+.|+.++..  ++...  ..+..    .+.         -.....+++         .++|.+.++-...+.|+.+
T Consensus       291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~  370 (433)
T 4hw6_A          291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL  370 (433)
T ss_dssp             ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred             eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence              45789998765  23211  11110    011         124678999         6777777776677889999


Q ss_pred             ecCCCcceeecCCCcccCCCCCC--------CceeEEEEecCCCCCEEEEEecCCcEEEEeCC
Q 001163         1048 TASTLRLRCRINPTAYLPTNPSL--------RVYPLVIAGNPTDPNQFALGLTDGGVYIIEPL 1102 (1134)
Q Consensus      1048 d~~~~~~~~~~~~~~~~~~~h~~--------~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~ 1102 (1134)
                      +. +|..............|...        --.+..+++.|.++.++++=...+.|+.+++.
T Consensus       371 ~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          371 TP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             CT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            84 56544333221100001000        12366778885567777777777888888764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.11  E-value=0.00046  Score=78.28  Aligned_cols=246  Identities=11%  Similarity=0.022  Sum_probs=142.8

Q ss_pred             CeeEEEEcC-CCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeC-CC----cEEEEEcccc
Q 001163          845 AVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGME-DS----SIQIYNVRVD  917 (1134)
Q Consensus       845 ~v~~v~~s~-dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-dg----~i~iwd~~~~  917 (1134)
                      ....++++| ++..|.++. .+.|+.+|+.++....... .......++|++ ++++|+++.. ++    .+.+++. .+
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~g  214 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-ES  214 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-CC
Confidence            456889998 455666665 5789999998766544433 556688999999 7775555543 22    3343443 33


Q ss_pred             eEE--EeccCccCceEEEEEee-CCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE
Q 001163          918 EVK--TKLKGHQKRITGLAFSN-TLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA  994 (1134)
Q Consensus       918 ~~~--~~l~~h~~~V~~l~~s~-d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~  994 (1134)
                      ...  ..+.. ......++++| +|.++++-..++.|..++..++...  ........     .....++|+|+|++|.+
T Consensus       215 ~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~--~~~~~~~~-----~~P~gia~~pdG~~lyv  286 (430)
T 3tc9_A          215 GFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT--PLFTIQDS-----GWEFHIQFHPSGNYAYI  286 (430)
T ss_dssp             TSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE--EEEECSSS-----SCCEEEEECTTSSEEEE
T ss_pred             ceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE--EEEEcCCC-----CcceeEEEcCCCCEEEE
Confidence            221  22221 23356788999 7777777777888999998865421  11222111     23678999999997766


Q ss_pred             E--eeceEEEEeCCC--ccc--ceeecc----CCC---------ccCEE-EEEEc--------cCCCEEEEEecCCcEEE
Q 001163          995 V--HETQIAIYEAPK--LEC--LKQFVP----REA---------SGPIT-HATYS--------CDSQSIYVAFEEGSVGV 1046 (1134)
Q Consensus       995 ~--~d~~i~iwd~~~--~~~--~~~~~~----~~h---------~~~v~-~~~~s--------~dg~~l~s~s~Dg~i~v 1046 (1134)
                      +  ..+.|..++...  ++.  +..+..    .+.         -.... .++..        ++|.+.++=...+.|+.
T Consensus       287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~  366 (430)
T 3tc9_A          287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI  366 (430)
T ss_dssp             EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred             EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence            4  567898887653  221  111110    000         11233 45553        34666666566788999


Q ss_pred             eecCCCcceeecCCCcccCCCC--------CCCceeEEEEecCCCCCEEEEEecCCcEEEEeCC
Q 001163         1047 LTASTLRLRCRINPTAYLPTNP--------SLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPL 1102 (1134)
Q Consensus      1047 wd~~~~~~~~~~~~~~~~~~~h--------~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~ 1102 (1134)
                      ++ .+|+..........-..|.        ..--.+..+++.|+++.++++-...+.|+.++++
T Consensus       367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            98 4565443332210000010        0011466778888556677766667788888764

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.10  E-value=0.0012  Score=67.71  Aligned_cols=191  Identities=8%  Similarity=0.052  Sum_probs=124.6

Q ss_pred             CCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001163          356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV  435 (1134)
Q Consensus       356 ~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las  435 (1134)
                      ...+..++|+|++..|+++...++.|...|.. ++.+....                 +.+ ....-.|++.+++.++++
T Consensus        26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~g~~~vs   86 (255)
T 3qqz_A           26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGDNQFVIS   86 (255)
T ss_dssp             CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECSTTEEEEE
T ss_pred             ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCCCEEEEE
Confidence            46799999999988888888889999999998 76655321                 122 256788999999988777


Q ss_pred             EeCCCEEEEEEccCCceee--eeeeee----cCCCCEEEEEEecCCCceEEEEEeCCC--eEEEEEC-CCCceeEEec--
Q 001163          436 AYSKHIVHLYTYHGGDELR--NHLEIE----AHVGSVNDLAFSYPNKQLSVVTCGEDR--VIKVWDA-VTGTKQYIFE--  504 (1134)
Q Consensus       436 ~s~dg~v~iwd~~~~~~~~--~~~~l~----~h~~~V~~v~~s~~~~~~~l~s~s~d~--~i~iwd~-~~~~~~~~~~--  504 (1134)
                      .-.++.+.++++.....+.  ....+.    ........++|+|+++.  |+++....  .|..|+- ..+..+..+.  
T Consensus        87 ~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~--L~va~E~~p~~i~~~~g~~~~~~l~i~~~~  164 (255)
T 3qqz_A           87 DERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT--FWFFKEKNPIEVYKVNGLLSSNELHISKDK  164 (255)
T ss_dssp             ETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE--EEEEEESSSEEEEEEESTTCSSCCEEEECH
T ss_pred             ECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCE--EEEEECcCCceEEEEcccccCCceeeecch
Confidence            6677889999887654322  111111    23455789999999985  33344333  4455541 1111222221  


Q ss_pred             -----CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCC---------CCeeEEEECcCCCEEEEE
Q 001163          505 -----GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG---------HSSTMMAYSADGARLFSC  569 (1134)
Q Consensus       505 -----~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~  569 (1134)
                           .+...+.++++++.. +.+++.....+.+.++|... +.+..+....         ..-..++|.++|+..+++
T Consensus       165 ~~~~~~~~~d~S~l~~dp~t-g~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs  241 (255)
T 3qqz_A          165 ALQRQFTLDDVSGAEFNQQK-NTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS  241 (255)
T ss_dssp             HHHHTCCSSCCCEEEEETTT-TEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE
T ss_pred             hhccccccCCceeEEEcCCC-CeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc
Confidence                 133456788888754 47778888888899998763 3333333321         256789999999865553

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.07  E-value=0.0071  Score=67.71  Aligned_cols=232  Identities=8%  Similarity=0.005  Sum_probs=145.5

Q ss_pred             EEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC----ceeEEecCCC
Q 001163          432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG----TKQYIFEGHE  507 (1134)
Q Consensus       432 ~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~----~~~~~~~~h~  507 (1134)
                      +|+.+. ...|+..++.+.....    +......+..++|++.+.. ++++-...+.|..+++...    .....+....
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~----~~~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~  158 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI  158 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred             eeEEec-cceeEEEccCCcceeE----eccccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence            444443 4678888888764322    2334567889999987664 4555556788999997652    2223333334


Q ss_pred             cCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC
Q 001163          508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG  587 (1134)
Q Consensus       508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~  587 (1134)
                      .....+++.+. ++.+.++-...+.|.+.+++.......+.........+++.|.+..|+..-...  ...|...++...
T Consensus       159 ~~p~glavD~~-~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~--~~~I~~~~~dG~  235 (400)
T 3p5b_L          159 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT--PAKIKKGGLNGV  235 (400)
T ss_dssp             SCEEEEEEETT-TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSS--SCCEEEEETTSC
T ss_pred             CCcccEEEEec-CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCC--CCEEEEEeCCCC
Confidence            55677887653 336667777788999998875544444443444678999999777776653221  245888887654


Q ss_pred             eeEEEecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcE
Q 001163          588 AVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGI  666 (1134)
Q Consensus       588 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i  666 (1134)
                      .........- .....+++++++..|+.+. ..+.|..+|++.......+...........+++. .+.++.+-...+.|
T Consensus       236 ~~~~~~~~~l-~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V  313 (400)
T 3p5b_L          236 DIYSLVTENI-QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI  313 (400)
T ss_dssp             SCEEEECSSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSE
T ss_pred             ccEEEEECCC-CceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeE
Confidence            3333333222 2678899999888888776 6678999998765544444432223334566663 34555566667888


Q ss_pred             EEEEccCC
Q 001163          667 KILANADG  674 (1134)
Q Consensus       667 ~iw~~~~~  674 (1134)
                      ..++..++
T Consensus       314 ~~~~~~~G  321 (400)
T 3p5b_L          314 FSANRLTG  321 (400)
T ss_dssp             EEEESSSC
T ss_pred             EEEEcCCC
Confidence            88887666

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.05  E-value=0.0011  Score=68.18  Aligned_cols=203  Identities=11%  Similarity=0.083  Sum_probs=131.7

Q ss_pred             CCCCeeEEEEcCCCCeEEEee--CCeEEEEEccCCeEEEEecC-CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccce
Q 001163          842 PEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMP-PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE  918 (1134)
Q Consensus       842 h~~~v~~v~~s~dg~~la~~s--dg~i~lwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~  918 (1134)
                      -...+..++++|++..|.+..  ++.|...|.. ++.++.+.- -....-.+++.+ ++.++++.-.++.+.++++....
T Consensus        25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~~  102 (255)
T 3qqz_A           25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISLTPNS  102 (255)
T ss_dssp             CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEECTTC
T ss_pred             cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcCCCC
Confidence            456799999999877666544  6789999997 888887642 235688899988 77777776677889999886543


Q ss_pred             E---EEecc------CccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccc--cceeeee--cCCCCCCCCCceEEEE
Q 001163          919 V---KTKLK------GHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQ--ASKFLTI--PNGRTASALADTRVQF  985 (1134)
Q Consensus       919 ~---~~~l~------~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~--~~~~~~~--~~~~~~~~~~v~~l~f  985 (1134)
                      .   +....      .+....-.|+|+|+++.|+++.+.....+|.++. ...  .......  ..+.. ....+..+++
T Consensus       103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g-~~~~~~l~i~~~~~~~~~~-~~~d~S~l~~  180 (255)
T 3qqz_A          103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNG-LLSSNELHISKDKALQRQF-TLDDVSGAEF  180 (255)
T ss_dssp             CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEES-TTCSSCCEEEECHHHHHTC-CSSCCCEEEE
T ss_pred             eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcc-cccCCceeeecchhhcccc-ccCCceeEEE
Confidence            2   22221      2344568999999998888887766667776652 111  0111110  00000 0134688999


Q ss_pred             cCCCCEEEE-E-eeceEEEEeCCCcccceeeccC-CC------ccCEEEEEEccCCCEEEEEecCCcEEEeecC
Q 001163          986 HLDQTHLLA-V-HETQIAIYEAPKLECLKQFVPR-EA------SGPITHATYSCDSQSIYVAFEEGSVGVLTAS 1050 (1134)
Q Consensus       986 s~dg~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~-~h------~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~ 1050 (1134)
                      .|....|.+ + ..+.+.++|.. ++.+..+... +.      -...-.|+|.++|++ +..++-+.+++|.-.
T Consensus       181 dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l-yIvsE~n~~y~f~~~  252 (255)
T 3qqz_A          181 NQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI-YIVSEPNRFYRFTPQ  252 (255)
T ss_dssp             ETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCE-EEEETTTEEEEEEC-
T ss_pred             cCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCE-EEEcCCceEEEEEec
Confidence            997666555 5 45788888876 5555555432 21      136689999999984 445777777776543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.03  E-value=0.004  Score=69.78  Aligned_cols=207  Identities=9%  Similarity=-0.027  Sum_probs=132.2

Q ss_pred             CCCeeEEEEcCCCCeEEEee--CCeEEEEEccCC----eEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEccc
Q 001163          843 EDAVPCFALSKNDSYVMSAS--GGKISLFNMMTF----KTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV  916 (1134)
Q Consensus       843 ~~~v~~v~~s~dg~~la~~s--dg~i~lwd~~~~----~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~  916 (1134)
                      ...+..++|++.+..|..++  .+.|+.+++...    .....+.........+++.+.++.+.++-...+.|.+.++..
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g  190 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  190 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence            45678999998777777665  578999998652    233334334456789999874566666666778999999876


Q ss_pred             ceEEEeccCccCceEEEEEeeCCCEEEEEe--CCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE
Q 001163          917 DEVKTKLKGHQKRITGLAFSNTLNVLVSSG--ADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA  994 (1134)
Q Consensus       917 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~  994 (1134)
                      ......+...-.....|++.|.+..|+.+.  ..+.|...+++.....   .+ ...+.    .....+++++++..|..
T Consensus       191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~---~~-~~~~l----~~P~glavd~~~~~lY~  262 (400)
T 3p5b_L          191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY---SL-VTENI----QWPNGITLDLLSGRLYW  262 (400)
T ss_dssp             CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE---EE-ECSSC----SCEEEEEEETTTTEEEE
T ss_pred             CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE---EE-EECCC----CceEEEEEEeCCCEEEE
Confidence            544333333344578999998766665544  2467888888763311   11 11111    34688999998888887


Q ss_pred             E--eeceEEEEeCCCcccceeecc-CCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecC
Q 001163          995 V--HETQIAIYEAPKLECLKQFVP-REASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRIN 1059 (1134)
Q Consensus       995 ~--~d~~i~iwd~~~~~~~~~~~~-~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~ 1059 (1134)
                      +  ..+.|..+|+.... ...+.. ...-....++++. .+.++++-...+.|..+|..+|+.+..+.
T Consensus       263 aD~~~~~I~~~d~dG~~-~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          263 VDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             EETTTTEEEEEETTSCC-CEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             EECCCCEEEEEeCCCCc-cEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            5  45789999987433 333321 1223455677773 34445555666889999987887655544

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.88  E-value=0.002  Score=68.49  Aligned_cols=197  Identities=10%  Similarity=0.142  Sum_probs=123.6

Q ss_pred             CCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCC---CCc---EEEEEe-C--CCcEEEEEcc--cceEEE
Q 001163          854 NDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQ---DNN---IIAIGM-E--DSSIQIYNVR--VDEVKT  921 (1134)
Q Consensus       854 dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~---~~~---~la~g~-~--dg~i~iwd~~--~~~~~~  921 (1134)
                      ...+++... .+.+.+||+ +|+.+..+..  +.++.+..-|.   +++   ++++.. .  +++|++|++.  +++ +.
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~  114 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ  114 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence            334544444 678999999 8888888853  67788777661   111   233333 3  5799999873  443 44


Q ss_pred             eccC------cc-CceEEEEE--eeC-CC-EEEEEeCCCcEEEEECCC---CccccceeeeecCCCCCCCCCceEEEEcC
Q 001163          922 KLKG------HQ-KRITGLAF--SNT-LN-VLVSSGADSQLCVWSTDG---WEKQASKFLTIPNGRTASALADTRVQFHL  987 (1134)
Q Consensus       922 ~l~~------h~-~~V~~l~~--s~d-~~-~l~s~s~Dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~l~fs~  987 (1134)
                      .+..      .. ..+..+++  ++. ++ +++....+|.+..|++..   +.......-.+..+     ..+..+...+
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-----sq~EgcvvDd  189 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-----SQTEGMAADD  189 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-----SCEEEEEEET
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-----CCcceEEEcC
Confidence            4421      11 55667887  664 43 688888899999999843   22222112222222     3578899999


Q ss_pred             CCCEEEEEe-eceEEEEeCC-----CcccceeeccCCCccCEEEEEE--ccCCC-EEEEEe-cCCcEEEeecC-CCccee
Q 001163          988 DQTHLLAVH-ETQIAIYEAP-----KLECLKQFVPREASGPITHATY--SCDSQ-SIYVAF-EEGSVGVLTAS-TLRLRC 1056 (1134)
Q Consensus       988 dg~~l~~~~-d~~i~iwd~~-----~~~~~~~~~~~~h~~~v~~~~~--s~dg~-~l~s~s-~Dg~i~vwd~~-~~~~~~ 1056 (1134)
                      ....|+++. +..|..|+.+     +++.+..+....-...+..|++  .++|+ ||++++ .++++.|||.. +.+.+.
T Consensus       190 ~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg  269 (355)
T 3amr_A          190 EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVA  269 (355)
T ss_dssp             TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEE
T ss_pred             CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEE
Confidence            888888874 4446666654     2344444422222447888888  56666 666666 56899999996 677776


Q ss_pred             ecC
Q 001163         1057 RIN 1059 (1134)
Q Consensus      1057 ~~~ 1059 (1134)
                      .+.
T Consensus       270 ~f~  272 (355)
T 3amr_A          270 DFR  272 (355)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            664

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.82  E-value=0.0024  Score=72.34  Aligned_cols=240  Identities=7%  Similarity=0.101  Sum_probs=133.8

Q ss_pred             CCEEEEEEcC-CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeC-CC----eEEEE
Q 001163          419 ASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-DR----VIKVW  492 (1134)
Q Consensus       419 ~~V~~l~~sp-d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~-d~----~i~iw  492 (1134)
                      .....|+|+| ++..|.++...+.|+.+|..++....    +.........++|+++++.  |+.+.. ++    .+.+.
T Consensus       137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~----~~~~~~~P~~ia~d~~G~~--lyvad~~~~~~~~~v~~~  210 (430)
T 3tc9_A          137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST----VYSGLSKVRTICWTHEADS--MIITNDQNNNDRPNNYIL  210 (430)
T ss_dssp             SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE----EECCCSCEEEEEECTTSSE--EEEEECCSCTTSEEEEEE
T ss_pred             CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE----EecCCCCcceEEEeCCCCE--EEEEeCCCCcccceEEEE
Confidence            3567899998 46666666555889999998765322    3334456889999999984  444433 22    23334


Q ss_pred             ECCCCcee--EEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecC-CCCCeeEEEECcCCCEEEEE
Q 001163          493 DAVTGTKQ--YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA-PGHSSTMMAYSADGARLFSC  569 (1134)
Q Consensus       493 d~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~  569 (1134)
                      + ..+...  ..+.. ......+++++. ++.++++-..++.|..++............ ....-..++|+|+|++|+.+
T Consensus       211 ~-~~g~~~~~~~l~~-~~~p~giavdp~-~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~  287 (430)
T 3tc9_A          211 T-RESGFKVITELTK-GQNCNGAETHPI-NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIV  287 (430)
T ss_dssp             E-GGGTSCSEEEEEE-CSSCCCEEECTT-TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEE
T ss_pred             e-CCCceeeeeeecc-CCCceEEEEeCC-CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEE
Confidence            4 344322  22221 122345566542 456677777788999999875443222222 22346789999999977666


Q ss_pred             ecCCCCCeEEEEEeCCC--Cee--EEEecCC------CC--------CceE-EEEEc--------CCCCEEEEEeCCCeE
Q 001163          570 GTNKEGESYLVEWNESE--GAV--KRTYHGL------GK--------RSVG-VVQFD--------TTKNRFLAAGDEFMI  622 (1134)
Q Consensus       570 ~~~~~~~~~i~~wd~~~--~~~--~~~~~~~------~~--------~~v~-~~~~~--------~~~~~l~~~~~dg~i  622 (1134)
                      ..   ....|..++...  +..  +..+.+.      ..        .... .++..        +++..+++=...+.|
T Consensus       288 d~---~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I  364 (430)
T 3tc9_A          288 VV---NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCI  364 (430)
T ss_dssp             ET---TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEE
T ss_pred             EC---CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEE
Confidence            43   244677766542  322  2222221      00        0122 45443        334444444467788


Q ss_pred             EEEEcCCCceeEEEec---------CC------CCCCcceEEEcCC-CcEEEEEECCCcEEEEEc
Q 001163          623 KFWDMDNVNLLASIDA---------DG------GLQASPCIRFNKE-GILLAVSTNDNGIKILAN  671 (1134)
Q Consensus       623 ~iwd~~~~~~~~~~~~---------~~------~~~~v~~v~~sp~-~~~l~~~~~dg~i~iw~~  671 (1134)
                      +.++. +|........         .+      .......++++|+ +.++++-...+.|+.+++
T Consensus       365 ~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          365 RILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             EEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             EEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence            88883 4544333321         00      0123568888884 555555555677777664

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.80  E-value=0.0048  Score=69.80  Aligned_cols=240  Identities=10%  Similarity=0.141  Sum_probs=134.4

Q ss_pred             CCEEEEEEcCC--CCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC---Ce-EEEE
Q 001163          419 ASVNRVMWSPD--GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED---RV-IKVW  492 (1134)
Q Consensus       419 ~~V~~l~~spd--~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d---~~-i~iw  492 (1134)
                      .....|+|+|+  +..|..+...+.|+.+|..++....    +.........++|+++|+  ++++....   .. +...
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~----~~~~~~~P~giavd~dG~--lyVad~~~~~~~~gv~~~  212 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI----KTTNIGQCADVNFTLNGD--MVVVDDQSSDTNTGIYLF  212 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE----ECCCCSCEEEEEECTTCC--EEEEECCSCTTSEEEEEE
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE----eecCCCCccEEEECCCCC--EEEEcCCCCcccceEEEE
Confidence            35678999995  4455555444889999998776432    333445689999999999  45554421   22 3333


Q ss_pred             ECCCCce-eEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCc-eeeecC-CCCCeeEEEECcCCCEEEEE
Q 001163          493 DAVTGTK-QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS-RVDYDA-PGHSSTMMAYSADGARLFSC  569 (1134)
Q Consensus       493 d~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~~~  569 (1134)
                      +...+.. ...+. .-.....+++++. ++.++++-..++.|+.+|..++.. ...... ....-..++|+|++++|+.+
T Consensus       213 ~~~~~~~~~~~~~-~~~~P~giavd~~-~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYva  290 (433)
T 4hw6_A          213 TRASGFTERLSLC-NARGAKTCAVHPQ-NGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYII  290 (433)
T ss_dssp             CGGGTTCCEEEEE-ECSSBCCCEECTT-TCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEE
T ss_pred             ECCCCeecccccc-ccCCCCEEEEeCC-CCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEE
Confidence            3222111 01111 1122334555442 446666666778899998875544 122211 12223469999999977766


Q ss_pred             ecCCCCCeEEEEEeCC--CCee--EEEecCC--------------CCCceEEEEE---------cCCCCEEEEEeCCCeE
Q 001163          570 GTNKEGESYLVEWNES--EGAV--KRTYHGL--------------GKRSVGVVQF---------DTTKNRFLAAGDEFMI  622 (1134)
Q Consensus       570 ~~~~~~~~~i~~wd~~--~~~~--~~~~~~~--------------~~~~v~~~~~---------~~~~~~l~~~~~dg~i  622 (1134)
                      ..   ....|+.++..  ++..  ...+.+.              .-.....+++         .++++.+++-...+.|
T Consensus       291 d~---~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I  367 (433)
T 4hw6_A          291 YN---GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTV  367 (433)
T ss_dssp             ET---TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEE
T ss_pred             eC---CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEE
Confidence            43   24568887754  3321  1222221              0013456888         6666666665677889


Q ss_pred             EEEEcCCCceeEEEecCCC----------------CCCcceEEEc-CCCcEEEEEECCCcEEEEEc
Q 001163          623 KFWDMDNVNLLASIDADGG----------------LQASPCIRFN-KEGILLAVSTNDNGIKILAN  671 (1134)
Q Consensus       623 ~iwd~~~~~~~~~~~~~~~----------------~~~v~~v~~s-p~~~~l~~~~~dg~i~iw~~  671 (1134)
                      +.++. +|.. ..+.+.+.                ......++++ ++|.++++-...+.|+.+++
T Consensus       368 ~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          368 RVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             EEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             EEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence            99985 5543 33332211                1224578888 56666555555667776664

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.76  E-value=0.03  Score=60.19  Aligned_cols=210  Identities=10%  Similarity=0.008  Sum_probs=127.4

Q ss_pred             CCEEEEEEcCCCCEE-EEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC
Q 001163          419 ASVNRVMWSPDGTLF-GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG  497 (1134)
Q Consensus       419 ~~V~~l~~spd~~~l-as~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~  497 (1134)
                      ..+..++|.+.+..| .+-...+.|..++..++.....  .+...-.....+++.+.+.. ++++-...+.|.++++...
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~--~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~  111 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN--VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGS  111 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE--EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE--EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCC
Confidence            357789999965555 4545678899999887632111  12222345678899876654 4566666789999997644


Q ss_pred             ceeEEecCCCcCEEEEeccccCCccEEEEe-cCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCC
Q 001163          498 TKQYIFEGHESPVYSICPHHKENIQFIFST-ATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGE  576 (1134)
Q Consensus       498 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~  576 (1134)
                      .....+.........+++.+.. +.++++- +..+.|...+++...........-..-..+++++++..|+.+-.   ..
T Consensus       112 ~~~~l~~~~~~~P~giavdp~~-g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~  187 (318)
T 3sov_A          112 LRKVLFWQELDQPRAIALDPSS-GFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KL  187 (318)
T ss_dssp             SCEEEECSSCSSEEEEEEEGGG-TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TT
T ss_pred             cEEEEEeCCCCCccEEEEeCCC-CEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CC
Confidence            3333333444556788886543 2344443 23577888887643333333333345678999998888877642   34


Q ss_pred             eEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Q 001163          577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID  637 (1134)
Q Consensus       577 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  637 (1134)
                      ..|..+|+..........+.. .....+++.. +..+++-...+.|..++..+|+....+.
T Consensus       188 ~~I~~~d~dG~~~~~~~~~~~-~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          188 NFIHKSNLDGTNRQAVVKGSL-PHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH  246 (318)
T ss_dssp             TEEEEEETTSCSCEEEECSCC-SCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CEEEEEcCCCCceEEEecCCC-CCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence            579999986433322233222 2456677643 3344444467888888887777666654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.75  E-value=0.028  Score=60.51  Aligned_cols=227  Identities=10%  Similarity=0.040  Sum_probs=138.4

Q ss_pred             CCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCcee-EEecCCCcCEEEEeccc
Q 001163          439 KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ-YIFEGHESPVYSICPHH  517 (1134)
Q Consensus       439 dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~h~~~v~~~~~~~  517 (1134)
                      ...|+..|+.+...... ..+. .......++|.+.+.. ++++-...+.|..+++..+... ..+...-.....+++.+
T Consensus        12 ~~~I~~i~l~~~~~~~~-~~~~-~~~~~~~ld~d~~~~~-lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~   88 (318)
T 3sov_A           12 RRDLRLVDATNGKENAT-IVVG-GLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW   88 (318)
T ss_dssp             EEEEEEEETTCTTSCCE-EEEE-EEEEEEEEEEEGGGTE-EEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEET
T ss_pred             cCeEEEEECCCCceEEE-EEec-CCCccEEEEEEeCCCE-EEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEc
Confidence            45689999987641111 1122 2234678999987664 4566667789999998766321 12221223345666654


Q ss_pred             cCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCC
Q 001163          518 KENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG  597 (1134)
Q Consensus       518 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~  597 (1134)
                      . ++.++++-...+.|.+++++.................+++.|.+..|+.....  ....|...++.... ...+....
T Consensus        89 ~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~--~~~~I~r~~~dG~~-~~~~~~~~  164 (318)
T 3sov_A           89 L-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSS-RFIIINSE  164 (318)
T ss_dssp             T-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECS--SSCEEEEEETTSCS-CEEEECSS
T ss_pred             C-CCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecC--CCCEEEEEEcCCCC-eEEEEECC
Confidence            3 33566777777899999987544444333344467889999977777665321  13568888876433 22222112


Q ss_pred             CCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCc
Q 001163          598 KRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGI  675 (1134)
Q Consensus       598 ~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~  675 (1134)
                      -.....+++++++..|+.+. ..+.|..+|++.........  +.......+++. .+.++.+-...+.|..++..++.
T Consensus       165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~--~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~  240 (318)
T 3sov_A          165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK--GSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGE  240 (318)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--SCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred             CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec--CCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCC
Confidence            22567899999887777766 67889999987544333332  123344567775 33455555567888888887663

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.74  E-value=0.027  Score=68.44  Aligned_cols=232  Identities=7%  Similarity=0.011  Sum_probs=141.5

Q ss_pred             EEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC----ceeEEecCCC
Q 001163          432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG----TKQYIFEGHE  507 (1134)
Q Consensus       432 ~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~----~~~~~~~~h~  507 (1134)
                      +|+.. ....|+..++.......    +......+..|+|.+.+.. ++++-...+.|+.+++...    .....+....
T Consensus       397 ~Ll~a-n~~~Ir~i~l~~~~~~~----l~~~~~~~~gl~~d~~~~~-lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l  470 (791)
T 3m0c_C          397 YLFFT-NRHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI  470 (791)
T ss_dssp             EEEEE-CBSSEEEECTTSCCCEE----EECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred             ccccc-cccceeEeeccCCccee----eecCCCceEEEeecccCCe-eEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence            44444 33457777877654322    3334556789999986664 4556666788999997653    2233333233


Q ss_pred             cCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC
Q 001163          508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG  587 (1134)
Q Consensus       508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~  587 (1134)
                      .....|++.+.. +.++++-...+.|.+.+++.......+.........|++.|.+.+|+..-..  ....|...++...
T Consensus       471 ~~P~GLAvD~~~-~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g--~~~~I~~~~~dG~  547 (791)
T 3m0c_C          471 QAPDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV  547 (791)
T ss_dssp             SCCCEEEEETTT-TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred             CCcceeeeeecC-CcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC--CCCeEEEEecCCC
Confidence            445667775443 3567777778899999987554444444344567899999987777765422  1246888888654


Q ss_pred             eeEEEecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcE
Q 001163          588 AVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGI  666 (1134)
Q Consensus       588 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i  666 (1134)
                      .....+.. .-.....|++.+.+..|+.+. ..+.|...++........+...........|++.. +.++++-...+.|
T Consensus       548 ~~~~lv~~-~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I  625 (791)
T 3m0c_C          548 DIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAI  625 (791)
T ss_dssp             CEEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEE
T ss_pred             ceEEEEeC-CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEE
Confidence            43333332 223678899998888887776 56789999987655555444322223334566532 2344444456777


Q ss_pred             EEEEccCC
Q 001163          667 KILANADG  674 (1134)
Q Consensus       667 ~iw~~~~~  674 (1134)
                      ...+..++
T Consensus       626 ~~~dk~tG  633 (791)
T 3m0c_C          626 FSANRLTG  633 (791)
T ss_dssp             EEEETTTC
T ss_pred             EEEeCCCC
Confidence            77776666

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.71  E-value=0.0064  Score=68.73  Aligned_cols=252  Identities=8%  Similarity=-0.017  Sum_probs=139.1

Q ss_pred             cEEEEEEec-CCceeeeecc-CCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEE----
Q 001163          778 RVSRLIYTN-SGLAILALAS-NAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFAL----  851 (1134)
Q Consensus       778 ~i~~l~~sp-dg~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~----  851 (1134)
                      ....|+|.| +...|+++.. .+.|++.|+.                      .+.+....-.+.........++|    
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~----------------------~~~v~~l~~~~~~~~~~p~~ia~~~~~  197 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLK----------------------NRMLSSPLNINTIPTNRIRSIAFNKKI  197 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETT----------------------TTEEEEEECCTTSSCSBEEEEEECCCB
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECC----------------------CCEEEEEEccCccccCCCcEEEEeecc
Confidence            467889998 4555555554 3555555433                      33222211111012345789999    


Q ss_pred             ---cCCCCeEEEee-CC-------eEEEEEccC-CeEE-----EEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEc
Q 001163          852 ---SKNDSYVMSAS-GG-------KISLFNMMT-FKTM-----TTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNV  914 (1134)
Q Consensus       852 ---s~dg~~la~~s-dg-------~i~lwd~~~-~~~~-----~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~  914 (1134)
                         +++|..|+++. .+       .|.+++... +...     ..+. .......++++|+++.++++-..++.|..+|+
T Consensus       198 ~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~  276 (496)
T 3kya_A          198 EGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDL  276 (496)
T ss_dssp             TTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECH
T ss_pred             cccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEec
Confidence               99999777776 32       266665433 1211     1221 11244677889966667777778889999999


Q ss_pred             c-------cceE--------------EEeccCccCceEEEEEeeCCCEEE-EEeCCCcEEEEECCCC--ccccceee-ee
Q 001163          915 R-------VDEV--------------KTKLKGHQKRITGLAFSNTLNVLV-SSGADSQLCVWSTDGW--EKQASKFL-TI  969 (1134)
Q Consensus       915 ~-------~~~~--------------~~~l~~h~~~V~~l~~s~d~~~l~-s~s~Dg~i~iwd~~~~--~~~~~~~~-~~  969 (1134)
                      .       ++..              +.... .......|+|+|+|++|. +-.....|+.++....  .......+ ..
T Consensus       277 ~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~-~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~  355 (496)
T 3kya_A          277 VDYFKTIKNGGSWDPIVKNNPNTFKQLFTIA-DPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGG  355 (496)
T ss_dssp             HHHHHHHHTTCCCCCBGGGCTTTEEEEEECS-SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEB
T ss_pred             ccccccccCceeecccccccccccceeEecC-CCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCC
Confidence            8       5543              11221 223457899999999544 4456678888665432  11000111 11


Q ss_pred             --cCCCCC------CCCCce-EEEEc-------CCCCEEEE-EeeceEEEEeCCCcccceeeccC------------C--
Q 001163          970 --PNGRTA------SALADT-RVQFH-------LDQTHLLA-VHETQIAIYEAPKLECLKQFVPR------------E-- 1018 (1134)
Q Consensus       970 --~~~~~~------~~~~v~-~l~fs-------~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~------------~-- 1018 (1134)
                        ..+...      ...... .++..       ++|.+.++ ..++.|+.++ .+|. +.++...            +  
T Consensus       356 ~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~  433 (496)
T 3kya_A          356 YKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTD  433 (496)
T ss_dssp             TTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCC
T ss_pred             CCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccC
Confidence              011100      001233 34444       45665555 4678899998 4453 3333211            1  


Q ss_pred             --------CccCEEEEEEccC-CCEEEEEecCCcEEEeecCCCcce
Q 001163         1019 --------ASGPITHATYSCD-SQSIYVAFEEGSVGVLTASTLRLR 1055 (1134)
Q Consensus      1019 --------h~~~v~~~~~s~d-g~~l~s~s~Dg~i~vwd~~~~~~~ 1055 (1134)
                              .-.....|+++++ |.+.++=..+..|+.++++.....
T Consensus       434 dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~  479 (496)
T 3kya_A          434 DGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV  479 (496)
T ss_dssp             CEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred             CCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence                    1134778999997 666666566788999998765543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.69  E-value=0.033  Score=67.68  Aligned_cols=213  Identities=9%  Similarity=-0.046  Sum_probs=127.6

Q ss_pred             CCCEEEEEEcCCCCEE-EEEeCCCEEEEEEccCCcee-eeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECC
Q 001163          418 TASVNRVMWSPDGTLF-GVAYSKHIVHLYTYHGGDEL-RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV  495 (1134)
Q Consensus       418 ~~~V~~l~~spd~~~l-as~s~dg~v~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~  495 (1134)
                      ...+..|+|.+.+..| ++-...+.|+.+++...... .....+.........|++.+.++. ++++-...+.|.+.++.
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETT
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeCC
Confidence            4577899999955555 45556678998988753210 011123324455778999988865 56666778899999976


Q ss_pred             CCceeEEecCCCcCEEEEeccccCCccEEEEecC-CCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCC
Q 001163          496 TGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT-DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKE  574 (1134)
Q Consensus       496 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~  574 (1134)
                      .......+...-.....|++.+.. +.++++-.. .+.|...+++...........-.....|++++.+..|+.+-.   
T Consensus       502 G~~~~~l~~~~l~~P~gIaVDp~~-g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~---  577 (791)
T 3m0c_C          502 GVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---  577 (791)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---
T ss_pred             CCeEEEEEeCCCCCcceEEEecCC-CCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC---
Confidence            544333333344557888886643 344444433 367888888754444444433356789999988888877642   


Q ss_pred             CCeEEEEEeCCCCeeEEEecCCC-CCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEe
Q 001163          575 GESYLVEWNESEGAVKRTYHGLG-KRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASID  637 (1134)
Q Consensus       575 ~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~  637 (1134)
                      +...|...++........+.... -.....|++.  +.+|+.+. ..+.|...|..+|+.+..+.
T Consensus       578 ~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~  640 (791)
T 3m0c_C          578 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA  640 (791)
T ss_dssp             TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             CCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence            24468889986544433333211 1133455553  33555554 66777777777776655553

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.68  E-value=0.00018  Score=87.12  Aligned_cols=206  Identities=9%  Similarity=-0.032  Sum_probs=123.8

Q ss_pred             CCeeEEEEcCCCCeEEEee--CCeEEEEEccC----CeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccc
Q 001163          844 DAVPCFALSKNDSYVMSAS--GGKISLFNMMT----FKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD  917 (1134)
Q Consensus       844 ~~v~~v~~s~dg~~la~~s--dg~i~lwd~~~----~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~  917 (1134)
                      ..+..++|++++..|..+.  .+.|+.+++.+    ......+.........|++.+.++.++++-...+.|.++++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            4466889998888777775  57899999875    22222222222345678888635666666566789999998755


Q ss_pred             eEEEeccCccCceEEEEEeeCCCEEEEEeC--CCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE
Q 001163          918 EVKTKLKGHQKRITGLAFSNTLNVLVSSGA--DSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV  995 (1134)
Q Consensus       918 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~  995 (1134)
                      .....+.........|++.|++.+|+.+..  .+.|..+++......   .+ +....    .....|+|+|++..|+++
T Consensus       486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~---~l-~~~~l----~~PnGlavd~~~~~LY~a  557 (699)
T 1n7d_A          486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY---SL-VTENI----QWPNGITLDLLSGRLYWV  557 (699)
T ss_dssp             CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC---EE-SCSSC----SSCCCEEECTTTCCEEEE
T ss_pred             ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee---EE-EeCCC----CCccEEEEeccCCEEEEE
Confidence            433333333344678899986655554432  267887777653211   11 11111    235779999987777664


Q ss_pred             --eeceEEEEeCCCcccceeecc-CCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecC
Q 001163          996 --HETQIAIYEAPKLECLKQFVP-REASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRIN 1059 (1134)
Q Consensus       996 --~d~~i~iwd~~~~~~~~~~~~-~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~ 1059 (1134)
                        ..+.|.++++.... ...+.. .........|++..+ .++++....+.|..++..+|+.+..+.
T Consensus       558 D~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          558 DSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             ETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             ecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence              45789999987432 233321 111223445566443 344455556899999988888776665

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.67  E-value=0.015  Score=61.79  Aligned_cols=195  Identities=11%  Similarity=0.136  Sum_probs=120.3

Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEecccc--CCcc---EEEEe-cC--CCcEEEEecCCCC-ceeeecC
Q 001163          479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHK--ENIQ---FIFST-AT--DGKIKAWLYDNLG-SRVDYDA  549 (1134)
Q Consensus       479 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~---~l~s~-s~--dg~i~vwd~~~~~-~~~~~~~  549 (1134)
                      ++++....+-+.++|+ +|+.++.+..  +.++.+.+-+.  -+|.   ++++. -.  +++|.+|+++... ....+..
T Consensus        42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~  118 (355)
T 3amr_A           42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD  118 (355)
T ss_dssp             EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred             EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence            5677777889999998 9999998864  45665554331  0111   23333 33  5789999875222 2222211


Q ss_pred             ------CC-CCeeEEEE--CcC-CC-EEEEEecCCCCCeEEEEEeC-------CCCeeEEEecCCCCCceEEEEEcCCCC
Q 001163          550 ------PG-HSSTMMAY--SAD-GA-RLFSCGTNKEGESYLVEWNE-------SEGAVKRTYHGLGKRSVGVVQFDTTKN  611 (1134)
Q Consensus       550 ------~~-~~v~~~~~--s~~-~~-~l~~~~~~~~~~~~i~~wd~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~  611 (1134)
                            .. ..+..+++  +|. ++ ++++...    ++.+..|++       .+.+.++++....  .+..+...+...
T Consensus       119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k----~G~~~q~~l~~~~~g~~~~~lVR~f~lgs--q~EgcvvDd~~g  192 (355)
T 3amr_A          119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK----EGEFEQYELKADKNGYISGKKVRAFKMNS--QTEGMAADDEYG  192 (355)
T ss_dssp             TTSCEECCCSSCCCEEEEECTTTCCEEEEEECS----SSEEEEEEEEECTTSCEEEEEEEEEECSS--CEEEEEEETTTT
T ss_pred             cccCcCCCCCCeeEEEEEecCCCCcEEEEEECC----CCeEEEEEEEeCCCCcccceEEEEecCCC--CcceEEEcCCCC
Confidence                  11 45667777  774 44 3444332    345777776       2446777777654  577888999899


Q ss_pred             EEEEEeCCCeEEEEEcC-----CCceeEEEecCCCCCCcceEEE--cCCCc-EEEEEE-CCCcEEEEEccCCceeEEEec
Q 001163          612 RFLAAGDEFMIKFWDMD-----NVNLLASIDADGGLQASPCIRF--NKEGI-LLAVST-NDNGIKILANADGIRLLRTVE  682 (1134)
Q Consensus       612 ~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~v~~--sp~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~~~  682 (1134)
                      .|+.+-++..|..++.+     +++.+..+........+..+++  .++++ +|++++ .+.++.+|+.....+.+..+.
T Consensus       193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            99999998777777755     3445544432222235677777  45555 566555 577999999864335555553

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.62  E-value=0.025  Score=63.97  Aligned_cols=245  Identities=9%  Similarity=0.107  Sum_probs=137.4

Q ss_pred             CEEEEEEcC-CCCEEEEE-eCCCEEEEEEccCCceeeeeeeee-cCCCCEEEEEE-------ecCCCceEEEEEeCCC--
Q 001163          420 SVNRVMWSP-DGTLFGVA-YSKHIVHLYTYHGGDELRNHLEIE-AHVGSVNDLAF-------SYPNKQLSVVTCGEDR--  487 (1134)
Q Consensus       420 ~V~~l~~sp-d~~~las~-s~dg~v~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~-------s~~~~~~~l~s~s~d~--  487 (1134)
                      ....|+|+| ++..|..+ ...+.|++.|.+++.... +.... ........++|       ++++..  |+.+...+  
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~-l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~--lyvad~~~~~  216 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSS-PLNINTIPTNRIRSIAFNKKIEGYADEAEY--MIVAIDYDGK  216 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEE-EECCTTSSCSBEEEEEECCCBTTTBCTTCE--EEEEECCCTT
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEE-EEccCccccCCCcEEEEeecccccCCCCCE--EEEEeCCCCC
Confidence            578999999 35544444 445678889988876432 21111 12235899999       999984  44444332  


Q ss_pred             -----eEEEEECCC-Ccee-----EEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecC-------CCCc------
Q 001163          488 -----VIKVWDAVT-GTKQ-----YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD-------NLGS------  543 (1134)
Q Consensus       488 -----~i~iwd~~~-~~~~-----~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~-------~~~~------  543 (1134)
                           .|.+.+... |...     ..+.... ....+++++. ++.++++-..++.|..+|+.       ++..      
T Consensus       217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~-~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~  294 (496)
T 3kya_A          217 GDESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPI-NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK  294 (496)
T ss_dssp             GGGEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTT-TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred             cccCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCC-CCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence                 366666333 2221     1221111 2234555542 44667777788899999987       4432      


Q ss_pred             -----e-eeecC-CCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeC--CCCee--EEEecCC---C---C--------
Q 001163          544 -----R-VDYDA-PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE--SEGAV--KRTYHGL---G---K--------  598 (1134)
Q Consensus       544 -----~-~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~--~~~~~--~~~~~~~---~---~--------  598 (1134)
                           . ..+.. .......++|+|+|+.|+.+-.   ....|+.++.  .++..  ...+.+.   .   +        
T Consensus       295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~---~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f  371 (496)
T 3kya_A          295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI---NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARM  371 (496)
T ss_dssp             GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEET---TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBC
T ss_pred             ccccccceeEecCCCCCceEEEEcCCCCEEEEEeC---CCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccccc
Confidence                 0 11112 2334578999999997666532   3456887554  44332  1222221   0   0        


Q ss_pred             CceE-EEEEc-------CCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCC----------------------CCCcceE
Q 001163          599 RSVG-VVQFD-------TTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGG----------------------LQASPCI  648 (1134)
Q Consensus       599 ~~v~-~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------------------~~~v~~v  648 (1134)
                      .... .++..       .++..+++=.....|+.++ .+|. +.++.+.+.                      ......|
T Consensus       372 ~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gI  449 (496)
T 3kya_A          372 NNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGL  449 (496)
T ss_dssp             SSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEE
T ss_pred             CCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEE
Confidence            0123 45554       4455555555778999998 4553 444433211                      1224578


Q ss_pred             EEcCC-CcEEEEEECCCcEEEEEccCC
Q 001163          649 RFNKE-GILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       649 ~~sp~-~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      +++++ |.++++=...+.||.+++...
T Consensus       450 avd~~~g~lyVaD~~N~rIrki~~~~~  476 (496)
T 3kya_A          450 VYDDVKEMFYVHDQVGHTIRTISMEQE  476 (496)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred             EEECCCCEEEEEeCCCCEEEEEECCCC
Confidence            88886 666666666778888877654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.44  E-value=0.0098  Score=62.69  Aligned_cols=201  Identities=12%  Similarity=0.084  Sum_probs=125.0

Q ss_pred             eeEEEEcCCCCeEEEee--CCeEEEEEccCCeEEEE-ecC----CC--CCeEEEEE---cCCCCcEEEEEe---------
Q 001163          846 VPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTT-FMP----PP--PAATFLAF---HPQDNNIIAIGM---------  904 (1134)
Q Consensus       846 v~~v~~s~dg~~la~~s--dg~i~lwd~~~~~~~~~-~~~----~~--~~v~~l~~---sp~~~~~la~g~---------  904 (1134)
                      ..+++|++....+..++  .++|..||...+..... +.+    ..  ..+..|.|   .| +++++++..         
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~~g   93 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNFAD   93 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCTTS
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccccccc
Confidence            34788987666666665  79999999976644433 222    11  13688999   68 688887644         


Q ss_pred             ----CCCcEEEEEcc---cceEEEecc--Ccc-----------CceEEEEEeeCCCEEEEEeCC-CcEEEEECCCCcccc
Q 001163          905 ----EDSSIQIYNVR---VDEVKTKLK--GHQ-----------KRITGLAFSNTLNVLVSSGAD-SQLCVWSTDGWEKQA  963 (1134)
Q Consensus       905 ----~dg~i~iwd~~---~~~~~~~l~--~h~-----------~~V~~l~~s~d~~~l~s~s~D-g~i~iwd~~~~~~~~  963 (1134)
                          .+..|..||+.   +++.+....  ...           .....++..++|+..++++.- +.|...+.+..... 
T Consensus        94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~-  172 (334)
T 2p9w_A           94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVS-  172 (334)
T ss_dssp             CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEE-
T ss_pred             cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEe-
Confidence                26789999999   777654332  211           247899999999999998887 77777776653211 


Q ss_pred             ceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-eeceEEEEeCCCcccceeeccC--C---CccCEEEE-EEccCCCE-E
Q 001163          964 SKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLECLKQFVPR--E---ASGPITHA-TYSCDSQS-I 1035 (1134)
Q Consensus       964 ~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~--~---h~~~v~~~-~~s~dg~~-l 1035 (1134)
                        ...............+.++++|||+.|++. ..+.+..+|+.+.... .+...  +   .-.....+ ..-.+|+. |
T Consensus       173 --~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G~vll  249 (334)
T 2p9w_A          173 --TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGNESVL  249 (334)
T ss_dssp             --EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETTEEEE
T ss_pred             --eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccccccccCCEEEE
Confidence              111111111111457799999999988884 5899999998843220 11110  1   11223443 33457887 5


Q ss_pred             EEEecCCcEEEeecCC
Q 001163         1036 YVAFEEGSVGVLTAST 1051 (1134)
Q Consensus      1036 ~s~s~Dg~i~vwd~~~ 1051 (1134)
                      ++.+..+.+.+.+-+.
T Consensus       250 V~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          250 VGARAPYAISFRSWDN  265 (334)
T ss_dssp             EEEETTEEEEEECSST
T ss_pred             EEcCCCCEEEEECCCC
Confidence            5555566666666554

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.40  E-value=0.0015  Score=79.02  Aligned_cols=232  Identities=7%  Similarity=0.007  Sum_probs=131.3

Q ss_pred             CCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCC----CceeEEecCCCcCEEEEe
Q 001163          439 KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT----GTKQYIFEGHESPVYSIC  514 (1134)
Q Consensus       439 dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~----~~~~~~~~~h~~~v~~~~  514 (1134)
                      .+.|+..++.+.....    +......+..++|.+.+.. ++++-...+.|+.+++..    ......+.........|+
T Consensus       385 ~~~I~~id~~~~~~~~----~~~~~~~p~gla~d~~~~~-Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gla  459 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA  459 (699)
T ss_dssp             TTC-CEECTTSCCEEC----CSCCCTTCCCCEEETTTTE-EEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEE
T ss_pred             ccceEEEeCCCCccee----eeccCcceEEEccccccCe-EEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEE
Confidence            3567888887755332    1122234678999987764 344545567899999875    222222221112234566


Q ss_pred             ccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEec
Q 001163          515 PHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH  594 (1134)
Q Consensus       515 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~  594 (1134)
                      +.+.. +.++++-...+.|.+++++.......+.........+++.|.+.+|+.....  ....|..+++.... ...+.
T Consensus       460 vD~~~-g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~--~~~~I~~~~~dG~~-~~~l~  535 (699)
T 1n7d_A          460 VDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGVD-IYSLV  535 (699)
T ss_dssp             CCCSS-SBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS--SSCCEEBCCSSSCC-CCEES
T ss_pred             EEeeC-CcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccC--CCCeEEEEeCCCCC-eeEEE
Confidence            65333 3556666667889999887544333333333456788999977666654321  12457777765332 22222


Q ss_pred             CCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccC
Q 001163          595 GLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD  673 (1134)
Q Consensus       595 ~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~  673 (1134)
                      ...-.....++++|++..|+.+. ..+.|.++++........+...........+++..+ .++++....+.|..++..+
T Consensus       536 ~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~  614 (699)
T 1n7d_A          536 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLT  614 (699)
T ss_dssp             CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTT
T ss_pred             eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccC
Confidence            11122456799999876666655 677899999875443333322112223445666544 4555556678898888766


Q ss_pred             CceeEEEe
Q 001163          674 GIRLLRTV  681 (1134)
Q Consensus       674 ~~~~~~~~  681 (1134)
                      + .....+
T Consensus       615 G-~~~~~i  621 (699)
T 1n7d_A          615 G-SDVNLL  621 (699)
T ss_dssp             E-EEEECC
T ss_pred             C-CceEEe
Confidence            6 344433

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.31  E-value=0.053  Score=59.30  Aligned_cols=228  Identities=10%  Similarity=0.065  Sum_probs=123.4

Q ss_pred             CCeeEEEEcCCCCeEEEeeCCeEEEEEccCCe-EEEEec---CCCCCeEEEEEcCC---CCcEEEEEeC---C----CcE
Q 001163          844 DAVPCFALSKNDSYVMSASGGKISLFNMMTFK-TMTTFM---PPPPAATFLAFHPQ---DNNIIAIGME---D----SSI  909 (1134)
Q Consensus       844 ~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~-~~~~~~---~~~~~v~~l~~sp~---~~~~la~g~~---d----g~i  909 (1134)
                      .....++|.|||+++++-.+|.|++++. +++ .+..+.   ........|+++|+   ++.+.++-+.   +    ..|
T Consensus        29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v  107 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV  107 (354)
T ss_dssp             SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred             CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence            3467899999999777666899999974 454 222221   12356889999993   3544444332   3    567


Q ss_pred             EEEEcccc-------eEE-Eecc---CccCceEEEEEeeCCCEEEEEeCC-------------CcEEEEECCCCccc---
Q 001163          910 QIYNVRVD-------EVK-TKLK---GHQKRITGLAFSNTLNVLVSSGAD-------------SQLCVWSTDGWEKQ---  962 (1134)
Q Consensus       910 ~iwd~~~~-------~~~-~~l~---~h~~~V~~l~~s~d~~~l~s~s~D-------------g~i~iwd~~~~~~~---  962 (1134)
                      ..|+...+       +.+ ..+.   .|.  ...|+|.|||.+.++.+..             +.|.-++.+..-..   
T Consensus       108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np  185 (354)
T 3a9g_A          108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP  185 (354)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEECCSSCC--CCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred             EEEEECCCCcCcCccEEEEEcCCCCCCcC--CceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence            77776543       111 1122   232  3579999999887775432             34554554431000   


Q ss_pred             --cceeeeecCCCCCCCCCceEEEEcC-CCCEEEE--Eeec--eEEEEeCCCcc------------------cceeeccC
Q 001163          963 --ASKFLTIPNGRTASALADTRVQFHL-DQTHLLA--VHET--QIAIYEAPKLE------------------CLKQFVPR 1017 (1134)
Q Consensus       963 --~~~~~~~~~~~~~~~~~v~~l~fs~-dg~~l~~--~~d~--~i~iwd~~~~~------------------~~~~~~~~ 1017 (1134)
                        .....  ..++.    ....++|+| +|++.++  +.++  .|.+.  ..+.                  .+..+.  
T Consensus       186 f~~~~i~--a~G~r----np~Gla~d~~~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~~--  255 (354)
T 3a9g_A          186 FPNSPIW--SYGHR----NPQGIDWHRASGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAGRGEFVDPVIDTG--  255 (354)
T ss_dssp             STTCCEE--EECCS----CCCEEEECTTTCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEECT--
T ss_pred             CCCCcEE--EEccC----CcceEEEeCCCCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCCCCCCcCCEeecC--
Confidence              00111  11221    256799999 6776555  2222  23332  2222                  111110  


Q ss_pred             CCccCEEEEEEc-------cCCCEEEEEecCCcEEEeecCCC-cceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEE
Q 001163         1018 EASGPITHATYS-------CDSQSIYVAFEEGSVGVLTASTL-RLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFAL 1089 (1134)
Q Consensus      1018 ~h~~~v~~~~~s-------~dg~~l~s~s~Dg~i~vwd~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s 1089 (1134)
                      ........++|.       .+|.++++....+.|...++... +.... .  .++. +-..  .+..+++.| |+.++++
T Consensus       256 ~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~-~--~~~~-~~~~--rp~~v~~~p-DG~lyv~  328 (354)
T 3a9g_A          256 SETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKI-S--TFFK-NVFG--RLRDVVIDD-DGGILIS  328 (354)
T ss_dssp             TCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEE-E--EECT-TTSC--CEEEEEECT-TSCEEEE
T ss_pred             CCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccce-e--eecc-CCCC--CeeEEEECC-CCcEEEE
Confidence            113467888883       57877777766778888888753 22110 0  0111 1112  244557778 5766666


Q ss_pred             Ee
Q 001163         1090 GL 1091 (1134)
Q Consensus      1090 ~~ 1091 (1134)
                      ..
T Consensus       329 ~~  330 (354)
T 3a9g_A          329 TS  330 (354)
T ss_dssp             EC
T ss_pred             Ee
Confidence            54

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.22  E-value=0.35  Score=52.44  Aligned_cols=261  Identities=8%  Similarity=0.088  Sum_probs=155.1

Q ss_pred             CcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeee
Q 001163          379 GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLE  458 (1134)
Q Consensus       379 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~  458 (1134)
                      ..|.|-|+.++..+.++.+                      .--+.-.+|..+.+|.=. ..++.|+|+++.+.++.   
T Consensus        48 ~~vvIiDl~~~~~~~rrpi----------------------~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks---  101 (494)
T 1bpo_A           48 AQVVIIDMNDPSNPIRRPI----------------------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKA---  101 (494)
T ss_dssp             CEEEEEETTSTTSCEEEEC----------------------CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEE---
T ss_pred             CeEEEEECCCCCcceeccc----------------------ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcc---
Confidence            3688889888766543322                      122355677777777665 67899999999876653   


Q ss_pred             eecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCC-CceeEEecCCCc--CEEEEeccccCCccEEEEec-------
Q 001163          459 IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT-GTKQYIFEGHES--PVYSICPHHKENIQFIFSTA-------  528 (1134)
Q Consensus       459 l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s-------  528 (1134)
                      ..- ...|..=.|-.+.. +.|+|   +..|+-|++.. ..+++.|..|..  ...-+.+..+++.++++..+       
T Consensus       102 ~~~-~e~VvfWkWis~~~-l~lVT---~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~  176 (494)
T 1bpo_A          102 HTM-TDDVTFWKWISLNT-VALVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNR  176 (494)
T ss_dssp             EEC-SSCCCEEEEEETTE-EEEEC---SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTE
T ss_pred             eec-CCCceEEEecCCCe-EEEEc---CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCc
Confidence            222 34577777876554 13333   46899999864 356666665532  22223333455556655332       


Q ss_pred             CCCcEEEEecCCCCceeeecCCCCCeeEEEECcCC---CEEEEEecCCCCCeEEEEEeCCCC--------eeEEE-e-cC
Q 001163          529 TDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADG---ARLFSCGTNKEGESYLVEWNESEG--------AVKRT-Y-HG  595 (1134)
Q Consensus       529 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~~~~~~~~i~~wd~~~~--------~~~~~-~-~~  595 (1134)
                      -.|.+.+|..+. +....+++|......+.+..+.   ..++.+.... ....+++.++...        +.... + ..
T Consensus       177 v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~-~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fpp  254 (494)
T 1bpo_A          177 VVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQ-AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP  254 (494)
T ss_dssp             EEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECST-TCCEEEEEECSCCCTTCCCCCCEEEECCCCT
T ss_pred             ccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecC-CCcEEEEEEcCCCccCCCCccceeeeeeCCc
Confidence            236788888764 3333444444333333322111   1233333222 2356888887532        11111 1 11


Q ss_pred             -CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163          596 -LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       596 -~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                       .......++..++....++..+.-|.|++||++++.++..-...  ...|...+.+....-++.....|.|.-..++..
T Consensus       255 e~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs--~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          255 EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS--GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             TSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred             ccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeeccc--CCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence             11224556888888899999999999999999999999887654  445655555555555666668888777666554

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.21  E-value=0.076  Score=58.11  Aligned_cols=197  Identities=11%  Similarity=0.084  Sum_probs=107.2

Q ss_pred             CeeEEEEcCCCCeEEEeeCCeEEEEEccCCeE--EEEec---CCCCCeEEEEEcCC---CCcEEEEEeCC-----CcEEE
Q 001163          845 AVPCFALSKNDSYVMSASGGKISLFNMMTFKT--MTTFM---PPPPAATFLAFHPQ---DNNIIAIGMED-----SSIQI  911 (1134)
Q Consensus       845 ~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~--~~~~~---~~~~~v~~l~~sp~---~~~~la~g~~d-----g~i~i  911 (1134)
                      ....++|.|||+++++-.+|.|++++  +++.  +..+.   ........++|+|+   ++.+.++-...     +.|..
T Consensus        32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r  109 (352)
T 2ism_A           32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR  109 (352)
T ss_dssp             CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred             CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence            45799999999977766589999998  3432  22222   12356899999993   24444444332     67888


Q ss_pred             EEcccc-----eEE-Eecc---CccCceEEEEEeeCCCEEEEEeCC-------------CcEEEEECCCCccc-------
Q 001163          912 YNVRVD-----EVK-TKLK---GHQKRITGLAFSNTLNVLVSSGAD-------------SQLCVWSTDGWEKQ-------  962 (1134)
Q Consensus       912 wd~~~~-----~~~-~~l~---~h~~~V~~l~~s~d~~~l~s~s~D-------------g~i~iwd~~~~~~~-------  962 (1134)
                      |+...+     +.+ ..+.   +.......++|.|||.+.++.+..             +.|.-++.+..-..       
T Consensus       110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~  189 (352)
T 2ism_A          110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGR  189 (352)
T ss_dssp             EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTC
T ss_pred             EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCC
Confidence            887643     122 2233   111123589999999877775432             44555554431000       


Q ss_pred             ---cceeeeecCCCCCCCCCceEEEEcC-CCCEEEEE-eeceE------EEEeCCCcc------------------ccee
Q 001163          963 ---ASKFLTIPNGRTASALADTRVQFHL-DQTHLLAV-HETQI------AIYEAPKLE------------------CLKQ 1013 (1134)
Q Consensus       963 ---~~~~~~~~~~~~~~~~~v~~l~fs~-dg~~l~~~-~d~~i------~iwd~~~~~------------------~~~~ 1013 (1134)
                         ......  .++.    ....++|+| +|.+.++- ..+.+      .|.-+..+.                  .+..
T Consensus       190 ~~~~~~i~a--~G~r----np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~  263 (352)
T 2ism_A          190 RGARPEVYS--LGHR----NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYF  263 (352)
T ss_dssp             TTSCTTEEE--ECCS----EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred             CCCCccEEE--EcCC----CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEe
Confidence               000111  1111    246689999 66655552 22221      233333332                  1111


Q ss_pred             eccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCc
Q 001163         1014 FVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLR 1053 (1134)
Q Consensus      1014 ~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~ 1053 (1134)
                      +   .+......++| .+|.++++.-..+.|...+++...
T Consensus       264 ~---~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~  299 (352)
T 2ism_A          264 W---PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGER  299 (352)
T ss_dssp             C---TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEET
T ss_pred             c---CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCC
Confidence            1   12345678888 577777766666778877776543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.14  E-value=0.064  Score=58.71  Aligned_cols=229  Identities=11%  Similarity=0.027  Sum_probs=115.8

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeee---ecCCCCEEEEEEecC---CCceEEEEEeCC-----Ce
Q 001163          420 SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEI---EAHVGSVNDLAFSYP---NKQLSVVTCGED-----RV  488 (1134)
Q Consensus       420 ~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l---~~h~~~V~~v~~s~~---~~~~~l~s~s~d-----~~  488 (1134)
                      ....++|.|||+++++ ..+|.|.+++  .++ ......+   .........|+|+|+   +.. ++++-...     +.
T Consensus        32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~-~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~-lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGR-LSTYAELSVYHRGESGLLGLALHPRFPQEPY-VYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CEEEEEECTTSCEEEE-ETTTEEEEEE--TTE-EEEEEECCCCCSTTCSEEEEEECTTTTTSCE-EEEEEEECTTSSEEE
T ss_pred             CceEEEEcCCCeEEEE-eCCCeEEEEE--CCC-ccEeecceEeecCCCCceeEEECCCCCCCCE-EEEEEecCCCCCccE
Confidence            5679999999995555 5669999988  443 2211111   122456889999998   554 33333322     57


Q ss_pred             EEEEECCCCc-----eeE-Eec---CCCcCEEEEeccccCCccEEEEecC-------------CCcEEEEecCCC-----
Q 001163          489 IKVWDAVTGT-----KQY-IFE---GHESPVYSICPHHKENIQFIFSTAT-------------DGKIKAWLYDNL-----  541 (1134)
Q Consensus       489 i~iwd~~~~~-----~~~-~~~---~h~~~v~~~~~~~~~~~~~l~s~s~-------------dg~i~vwd~~~~-----  541 (1134)
                      |..++...+.     .+. .+.   +.......++|.  ++|.+.++.+.             .|.|.-++.+..     
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~--pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~n  184 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFG--PDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGN  184 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEEC--TTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTC
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEEC--CCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCC
Confidence            8888876442     121 233   111122456764  45566665432             145555554320     


Q ss_pred             -------CceeeecCCCCCeeEEEECc-CCCEEEEEecCCCC-----CeEEEEEeCCC----------------CeeEEE
Q 001163          542 -------GSRVDYDAPGHSSTMMAYSA-DGARLFSCGTNKEG-----ESYLVEWNESE----------------GAVKRT  592 (1134)
Q Consensus       542 -------~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~-----~~~i~~wd~~~----------------~~~~~~  592 (1134)
                             .....+.........++|+| +++..++-. ..+.     ...|.+.....                ..++..
T Consensus       185 pf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~-g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~  263 (352)
T 2ism_A          185 PFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEH-GPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYF  263 (352)
T ss_dssp             TTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEE-CC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred             cccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEc-CCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEe
Confidence                   00001111112346788999 555544432 2111     01233322111                012222


Q ss_pred             ecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce------eEEEecCCCCCCcceEEEcCCCcEEEEEE
Q 001163          593 YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL------LASIDADGGLQASPCIRFNKEGILLAVST  661 (1134)
Q Consensus       593 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~v~~sp~~~~l~~~~  661 (1134)
                      +..+.  ....++| .++..+++.-..+.|...++.....      ...+-.  ....+..+++.|||.++++..
T Consensus       264 ~~~~~--ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          264 WPQGF--PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS--GFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             CTTCC--CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEECTTSCEEEEEC
T ss_pred             cCCCC--CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc--cCCCeeEEEECCCCcEEEEEe
Confidence            22111  3456677 4565555555667788777764331      112211  134678999999998776654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.09  E-value=0.059  Score=58.99  Aligned_cols=239  Identities=11%  Similarity=0.088  Sum_probs=124.8

Q ss_pred             CeeEEEEcCCCC-eEEEeeCCeEEEEEccCCeEEEEec-------CCCCCeEEEEEcCC---CCcEEEEEeC-------C
Q 001163          845 AVPCFALSKNDS-YVMSASGGKISLFNMMTFKTMTTFM-------PPPPAATFLAFHPQ---DNNIIAIGME-------D  906 (1134)
Q Consensus       845 ~v~~v~~s~dg~-~la~~sdg~i~lwd~~~~~~~~~~~-------~~~~~v~~l~~sp~---~~~~la~g~~-------d  906 (1134)
                      ....|+|.|||+ ++++-..|.|++++.. +.....+.       ........++|+|+   ++.+.++-+.       .
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            457999999999 6666558999999853 33221111       12345789999993   3444444332       2


Q ss_pred             CcEEEEEcccc-------eEE-Eecc-----CccCceEEEEEeeCCCEEEEEeCC-------------CcEEEEECCCCc
Q 001163          907 SSIQIYNVRVD-------EVK-TKLK-----GHQKRITGLAFSNTLNVLVSSGAD-------------SQLCVWSTDGWE  960 (1134)
Q Consensus       907 g~i~iwd~~~~-------~~~-~~l~-----~h~~~V~~l~~s~d~~~l~s~s~D-------------g~i~iwd~~~~~  960 (1134)
                      ..|..|++..+       +.+ ..+.     .|.  ...|+|.|||.+.++.+..             |.|.-++.+..-
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~  175 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI  175 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence            35666665432       111 1222     132  3579999999777765442             356666655421


Q ss_pred             cc----------cceeeeecCCCCCCCCCceEEEEcC-CCCEEEE--EeeceEEEEeCCCcccc----------------
Q 001163          961 KQ----------ASKFLTIPNGRTASALADTRVQFHL-DQTHLLA--VHETQIAIYEAPKLECL---------------- 1011 (1134)
Q Consensus       961 ~~----------~~~~~~~~~~~~~~~~~v~~l~fs~-dg~~l~~--~~d~~i~iwd~~~~~~~---------------- 1011 (1134)
                      ..          .....  ..++.    ....++|.| +|++.++  +.++.=.|.-+..+...                
T Consensus       176 p~~npf~~~~~~~~~i~--a~G~r----np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~  249 (353)
T 2g8s_A          176 PDDNPFIKESGVRAEIW--SYGIR----NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI  249 (353)
T ss_dssp             CTTCTTTTSTTSCTTEE--EECCS----EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred             CCCCCCcCCCCCCccEE--EEcCc----CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence            00          00111  11221    267899999 5665555  22222233322222110                


Q ss_pred             --------eeecc----CCCccCEEEEEEcc-------CCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCc
Q 001163         1012 --------KQFVP----REASGPITHATYSC-------DSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRV 1072 (1134)
Q Consensus      1012 --------~~~~~----~~h~~~v~~~~~s~-------dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v 1072 (1134)
                              ..+..    -.+...+..++|..       +|.++++.-..+.|...+++.++......   ++. +...  
T Consensus       250 ~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~-~~~~--  323 (353)
T 2g8s_A          250 PEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILT-DRGQ--  323 (353)
T ss_dssp             TTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESG-GGCC--
T ss_pred             CcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---ccc-CCCC--
Confidence                    00000    01234677888863       57777777677888888887664332211   110 1112  


Q ss_pred             eeEEEEecCCCCCEEEEEe-cCCcEEEEeC
Q 001163         1073 YPLVIAGNPTDPNQFALGL-TDGGVYIIEP 1101 (1134)
Q Consensus      1073 ~~~~~~~~p~~~~~l~s~~-~Dg~v~vW~~ 1101 (1134)
                      .+..+++.| |+.++++.. .+|  +||.+
T Consensus       324 rp~~v~~~p-dG~lyv~td~~~g--~I~ri  350 (353)
T 2g8s_A          324 RIRDVRTGP-DGYLYVLTDESSG--ELLKV  350 (353)
T ss_dssp             CEEEEEECT-TSCEEEEECSTTE--EEEEE
T ss_pred             ceeEEEECC-CCcEEEEEeCCCC--EEEEE
Confidence            345557888 677666443 344  45554

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.02  E-value=0.056  Score=57.74  Aligned_cols=195  Identities=9%  Similarity=-0.028  Sum_probs=99.6

Q ss_pred             CCCEEEEEeCC-----CEEEEEEccCCc---eeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC-----CeEEEEECC
Q 001163          429 DGTLFGVAYSK-----HIVHLYTYHGGD---ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED-----RVIKVWDAV  495 (1134)
Q Consensus       429 d~~~las~s~d-----g~v~iwd~~~~~---~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d-----~~i~iwd~~  495 (1134)
                      ++++++.|+.+     ..+.+||..+++   -.. ...+......-.++.+  +++  +++.|+.+     ..+.++|..
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~~d~~  136 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYS-VAPMNVRRGLAGATTL--GDM--IYVSGGFDGSRRHTSMERYDPN  136 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEE-ECCCSSCCBSCEEEEE--TTE--EEEECCBCSSCBCCEEEEEETT
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEE-CCCCCCCccceeEEEE--CCE--EEEEcccCCCcccceEEEEcCC
Confidence            67777777755     358899988765   221 1122211111222222  455  56666643     368899988


Q ss_pred             CCceeE--EecCCCcCEEEEeccccCCccEEEEecCC-----CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEE
Q 001163          496 TGTKQY--IFEGHESPVYSICPHHKENIQFIFSTATD-----GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFS  568 (1134)
Q Consensus       496 ~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  568 (1134)
                      +.+-..  .+......-.++.+    ++.+++.|+.+     ..+.+||+.+..-...-..........+..-+++.++.
T Consensus       137 ~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~  212 (301)
T 2vpj_A          137 IDQWSMLGDMQTAREGAGLVVA----SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVV  212 (301)
T ss_dssp             TTEEEEEEECSSCCBSCEEEEE----TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEE
T ss_pred             CCeEEECCCCCCCcccceEEEE----CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEE
Confidence            775433  22211111122221    33677777654     45788887764333221111111111122235667777


Q ss_pred             EecCCCC-CeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCcee
Q 001163          569 CGTNKEG-ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNVNLL  633 (1134)
Q Consensus       569 ~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~  633 (1134)
                      ++.+... ...+.+||+.+.+....-.......-..++. -++..++.|+.+     ..+.+||..+.+..
T Consensus       213 GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  282 (301)
T 2vpj_A          213 GGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV-LRGRLYAIAGYDGNSLLSSIECYDPIIDSWE  282 (301)
T ss_dssp             CCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred             eCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE-ECCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence            7654332 3458999998876554322221111112222 256677777654     45788888776543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.01  E-value=0.16  Score=54.20  Aligned_cols=236  Identities=10%  Similarity=-0.035  Sum_probs=118.4

Q ss_pred             CeEEEEEeCC--CcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCC----CEE
Q 001163          369 QILLVVGTNM--GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK----HIV  442 (1134)
Q Consensus       369 ~~lla~gs~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~d----g~v  442 (1134)
                      .+|++.|+.+  ..+.+||..+++-..         ... .+..   ..+|    .++.  -++++++.|+.+    ..+
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~---------~~~-~p~~---r~~~----~~~~--~~~~lyv~GG~~~~~~~~~   72 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTD---------IRC-PFEK---RRDA----ACVF--WDNVVYILGGSQLFPIKRM   72 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEE---------CCC-CSCC---CBSC----EEEE--ETTEEEEECCBSSSBCCEE
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEec---------CCC-CCcc---ccee----EEEE--ECCEEEEEeCCCCCCcceE
Confidence            4566777653  578889988765221         110 0100   1112    2222  267777788755    568


Q ss_pred             EEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC------CeEEEEECCCCceeEE--ecCCCcCEEEEe
Q 001163          443 HLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED------RVIKVWDAVTGTKQYI--FEGHESPVYSIC  514 (1134)
Q Consensus       443 ~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d------~~i~iwd~~~~~~~~~--~~~h~~~v~~~~  514 (1134)
                      .+||..+++-.. ...+......-..+.  -+++  +++.|+.+      ..+.+||..+.+-...  +......-.++.
T Consensus        73 ~~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~--iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~  147 (306)
T 3ii7_A           73 DCYNVVKDSWYS-KLGPPTPRDSLAACA--AEGK--IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE  147 (306)
T ss_dssp             EEEETTTTEEEE-EECCSSCCBSCEEEE--ETTE--EEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred             EEEeCCCCeEEE-CCCCCccccceeEEE--ECCE--EEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE
Confidence            899998875322 212221111122222  2555  56667655      4688999888754332  111111111222


Q ss_pred             ccccCCccEEEEecC---------CCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCC-CeEEEEEeC
Q 001163          515 PHHKENIQFIFSTAT---------DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG-ESYLVEWNE  584 (1134)
Q Consensus       515 ~~~~~~~~~l~s~s~---------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~i~~wd~  584 (1134)
                      +    ++.+++.|+.         -..+.+||+.+..-...-..........+..-+++.++.++.+... ...+.+||+
T Consensus       148 ~----~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~  223 (306)
T 3ii7_A          148 A----NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDI  223 (306)
T ss_dssp             E----TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEET
T ss_pred             E----CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeC
Confidence            1    3356666653         3457788887653322211111111111222266677776643321 234889999


Q ss_pred             CCCeeEEEecCCCCC-ceEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCceeE
Q 001163          585 SEGAVKRTYHGLGKR-SVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNVNLLA  634 (1134)
Q Consensus       585 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~  634 (1134)
                      .+.+....-...... ....+.+  ++..++.|+.+     ..+.+||..+.+...
T Consensus       224 ~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~  277 (306)
T 3ii7_A          224 KLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWVA  277 (306)
T ss_dssp             TTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred             CCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence            887644332111111 1222222  56677777743     568889988876443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.99  E-value=0.097  Score=55.16  Aligned_cols=161  Identities=13%  Similarity=0.121  Sum_probs=104.7

Q ss_pred             eEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCcccccccc--ccCCCCEEEEEE---cCCCCEEE
Q 001163          360 KSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLS--SDYTASVNRVMW---SPDGTLFG  434 (1134)
Q Consensus       360 ~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~l~~---spd~~~la  434 (1134)
                      .+++|.+....++++.-..++|..||...+..... .+            . .+.  ......+..|.|   .|++++++
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~------------~-~~s~~g~~~~~~sGl~~~~~D~~grL~v   81 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VI------------D-GASSNGDGEQQMSGLSLLTHDNSKRLFA   81 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CC------------T-TTCCSSCCSEEEEEEEESSSSSCCEEEE
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ec------------C-CccccCCCcceeeEEEEeccCCCCcEEE
Confidence            48899987666766666899999999976543221 10            0 000  011124589999   68888887


Q ss_pred             EEe-------------CCCEEEEEEcc---CCceeeeeeeeecCC-----------CCEEEEEEecCCCceEEEEEeCC-
Q 001163          435 VAY-------------SKHIVHLYTYH---GGDELRNHLEIEAHV-----------GSVNDLAFSYPNKQLSVVTCGED-  486 (1134)
Q Consensus       435 s~s-------------~dg~v~iwd~~---~~~~~~~~~~l~~h~-----------~~V~~v~~s~~~~~~~l~s~s~d-  486 (1134)
                      +..             .+..|..+|+.   +++.+... .|....           .....++..++|+  ..++++.- 
T Consensus        82 v~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn--aYVt~s~~~  158 (334)
T 2p9w_A           82 VMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQDEFEKKAGKRPFGVVQSAQDRDGN--SYVAFALGM  158 (334)
T ss_dssp             EEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHHHHHHHHHSSCCEEEEEEEECTTSC--EEEEEEESS
T ss_pred             EEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEe-cCccccccccccccccccCCceeEECCCCC--EEEeCCCCC
Confidence            644             26789999999   77655422 232221           2488999999999  78888888 


Q ss_pred             CeEEEEECCCCceeEEec------CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCC
Q 001163          487 RVIKVWDAVTGTKQYIFE------GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN  540 (1134)
Q Consensus       487 ~~i~iwd~~~~~~~~~~~------~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~  540 (1134)
                      +.|...+.. |+.+..+.      ......+.|++++  +|.+|++....|.+..+|+..
T Consensus       159 ~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~p--dg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          159 PAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDP--HSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             CEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEET--TTTEEEEESSSSSEEEEECSS
T ss_pred             CeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeC--CCCEEEEEcCCCeEEEEcCCC
Confidence            887777744 44333221      1122356788865  446677666699999999884

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.96  E-value=0.31  Score=52.40  Aligned_cols=201  Identities=10%  Similarity=0.065  Sum_probs=110.7

Q ss_pred             CCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeE--EEEec----CCCCCeEEEEEcCC---CCcEEEEEe--CCCcEEE
Q 001163          844 DAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT--MTTFM----PPPPAATFLAFHPQ---DNNIIAIGM--EDSSIQI  911 (1134)
Q Consensus       844 ~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~--~~~~~----~~~~~v~~l~~sp~---~~~~la~g~--~dg~i~i  911 (1134)
                      ...+.++|.|||+++++-. .|.|++++..+++.  +..+.    ........|+|+|+   ++.+.++-+  .++.|.-
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R  111 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR  111 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence            4567999999999988887 79999998765543  22221    12356789999993   344444322  3455666


Q ss_pred             EEcccc----------eEE-Eecc---CccCceEEEEEeeCCCEEEEEeC-------------CCcEEEEECCCCccccc
Q 001163          912 YNVRVD----------EVK-TKLK---GHQKRITGLAFSNTLNVLVSSGA-------------DSQLCVWSTDGWEKQAS  964 (1134)
Q Consensus       912 wd~~~~----------~~~-~~l~---~h~~~V~~l~~s~d~~~l~s~s~-------------Dg~i~iwd~~~~~~~~~  964 (1134)
                      |.+..+          +.+ ..+.   .|.  ...|+|.|||.+.++.+.             .|.|.-.+.+..-....
T Consensus       112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n  189 (347)
T 3das_A          112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHN--GGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN  189 (347)
T ss_dssp             EEBCTTSCTTCCBCCCEEEEEEECCCSSCC--CCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred             EEeCCCCcccccCCCcEEEEEcCCCCCCcc--CccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence            665441          111 1222   243  357999999988888653             24444444443100000


Q ss_pred             e---eeeecCCCCCCCCCceEEEEcCCCCEEEE--EeeceEEEEeCCCccc------------------ceeeccCCCcc
Q 001163          965 K---FLTIPNGRTASALADTRVQFHLDQTHLLA--VHETQIAIYEAPKLEC------------------LKQFVPREASG 1021 (1134)
Q Consensus       965 ~---~~~~~~~~~~~~~~v~~l~fs~dg~~l~~--~~d~~i~iwd~~~~~~------------------~~~~~~~~h~~ 1021 (1134)
                      .   ..-...++.    ....++|+|+|.+.++  +.++.=.|.-+..+..                  +..+.  .+..
T Consensus       190 Pf~~~~i~a~G~R----Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~--~~~~  263 (347)
T 3das_A          190 PFPGSPVYSYGHR----NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWS--TDEA  263 (347)
T ss_dssp             SSTTCCEEEBCCS----BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEEC--TTTC
T ss_pred             CCCCCeEEeeCCC----CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecC--CCCC
Confidence            0   000111222    2578999999887666  3333233333333321                  11111  1124


Q ss_pred             CEEEEEEccCCCEEEEEecCCcEEEeecCCCc
Q 001163         1022 PITHATYSCDSQSIYVAFEEGSVGVLTASTLR 1053 (1134)
Q Consensus      1022 ~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~ 1053 (1134)
                      ....++|. +|.+++..-..+.|....+..+.
T Consensus       264 ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~  294 (347)
T 3das_A          264 SPSGIAYA-EGSVWMAGLRGERLWRIPLKGTA  294 (347)
T ss_dssp             CEEEEEEE-TTEEEEEESTTCSEEEEEEETTE
T ss_pred             CCcceEEE-cCceeeccccCCEEEEEEecCCc
Confidence            66788886 56666665555666666665543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.95  E-value=0.11  Score=55.60  Aligned_cols=232  Identities=6%  Similarity=-0.023  Sum_probs=117.7

Q ss_pred             CEEEEEeC--CCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC----CeEEEEECCCCceeEE--
Q 001163          431 TLFGVAYS--KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED----RVIKVWDAVTGTKQYI--  502 (1134)
Q Consensus       431 ~~las~s~--dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d----~~i~iwd~~~~~~~~~--  502 (1134)
                      .+++.|+.  ...+.+||..+++-.. ...+......-..+.  -++.  +++.|+.+    ..+.++|..+++-...  
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~   87 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTD-IRCPFEKRRDAACVF--WDNV--VYILGGSQLFPIKRMDCYNVVKDSWYSKLG   87 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEE-CCCCSCCCBSCEEEE--ETTE--EEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEec-CCCCCcccceeEEEE--ECCE--EEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence            34555654  3468899988765322 112221111122222  2455  66777654    6788999888754332  


Q ss_pred             ecCCCcCEEEEeccccCCccEEEEecCC------CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCC-
Q 001163          503 FEGHESPVYSICPHHKENIQFIFSTATD------GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG-  575 (1134)
Q Consensus       503 ~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-  575 (1134)
                      +......-..+.+    ++.+++.|+.+      ..+.+||..+..-...-..........+..-+++.++.++.+... 
T Consensus        88 ~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~  163 (306)
T 3ii7_A           88 PPTPRDSLAACAA----EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNV  163 (306)
T ss_dssp             CSSCCBSCEEEEE----TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTT
T ss_pred             CCccccceeEEEE----CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCC
Confidence            2211111122222    33677777765      458888877654322211111111111122366677776654332 


Q ss_pred             ----CeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCceeEEEecCCCCCCcc
Q 001163          576 ----ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNVNLLASIDADGGLQASP  646 (1134)
Q Consensus       576 ----~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~  646 (1134)
                          ...+.+||+.+.+....-.......-.+++.. ++..++.|+.+     ..+.+||..+.+....-..........
T Consensus       164 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~  242 (306)
T 3ii7_A          164 SGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVK  242 (306)
T ss_dssp             TCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCE
T ss_pred             cccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCcccee
Confidence                34588999988765443222211111222222 55666666633     468899998876443322211111122


Q ss_pred             eEEEcCCCcEEEEEECC-----CcEEEEEccCC
Q 001163          647 CIRFNKEGILLAVSTND-----NGIKILANADG  674 (1134)
Q Consensus       647 ~v~~sp~~~~l~~~~~d-----g~i~iw~~~~~  674 (1134)
                      ++.+  ++.+++.|+.+     ..+.+||..+.
T Consensus       243 ~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          243 CAAV--GSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             EEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             EEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence            2333  67788888754     46778887765

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.92  E-value=0.059  Score=57.59  Aligned_cols=234  Identities=12%  Similarity=0.014  Sum_probs=117.7

Q ss_pred             CCCEEEEEe-CC-----CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC-----CeEEEEECCCC
Q 001163          429 DGTLFGVAY-SK-----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED-----RVIKVWDAVTG  497 (1134)
Q Consensus       429 d~~~las~s-~d-----g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d-----~~i~iwd~~~~  497 (1134)
                      ++.+++.|+ .+     ..+.+||..+++-.. ...+.........+  ..++.  +++.|+.+     ..+.++|..++
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~--~~~~~--l~v~GG~~~~~~~~~~~~~d~~~~   88 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF-LPSITRKRRYVASV--SLHDR--IYVIGGYDGRSRLSSVECLDYTAD   88 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEE-CCCCSSCCBSCEEE--EETTE--EEEECCBCSSCBCCCEEEEETTCC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEe-CCCCChhhccccEE--EECCE--EEEEcCCCCCccCceEEEEECCCC
Confidence            455666666 33     358889988765322 11122111111222  23454  66677654     46889998887


Q ss_pred             c---eeE--EecCCCcCEEEEeccccCCccEEEEecCC-----CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEE
Q 001163          498 T---KQY--IFEGHESPVYSICPHHKENIQFIFSTATD-----GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLF  567 (1134)
Q Consensus       498 ~---~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  567 (1134)
                      +   -..  .+......-.++.+    ++.+++.|+.+     ..+.+||+.+..-...-..........+..-+++.++
T Consensus        89 ~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv  164 (301)
T 2vpj_A           89 EDGVWYSVAPMNVRRGLAGATTL----GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYC  164 (301)
T ss_dssp             TTCCCEEECCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEE
T ss_pred             CCCeeEECCCCCCCccceeEEEE----CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEE
Confidence            6   322  22211111122221    33677777654     3577888765443222212221111112223677777


Q ss_pred             EEecCCCC-CeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCceeEEEecCCC
Q 001163          568 SCGTNKEG-ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNVNLLASIDADGG  641 (1134)
Q Consensus       568 ~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~  641 (1134)
                      .++.++.. ...+.+||+.+.+....-.......-.+++. .++..++.|+.+     ..+.+||..+.+....-.....
T Consensus       165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~  243 (301)
T 2vpj_A          165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP  243 (301)
T ss_dssp             ECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSC
T ss_pred             ECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCc
Confidence            77654321 2458899998876554322211111112222 255666777653     4689999988765543222211


Q ss_pred             CCCcceEEEcCCCcEEEEEECC-----CcEEEEEccCC
Q 001163          642 LQASPCIRFNKEGILLAVSTND-----NGIKILANADG  674 (1134)
Q Consensus       642 ~~~v~~v~~sp~~~~l~~~~~d-----g~i~iw~~~~~  674 (1134)
                        .....+..-++++++.|+.+     ..+.+||..+.
T Consensus       244 --r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          244 --RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             --CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             --ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence              11222222367777777765     35677777664

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.91  E-value=0.38  Score=52.48  Aligned_cols=231  Identities=8%  Similarity=-0.055  Sum_probs=119.8

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeee---ecCCCCEEEEEEecC---CCceEEEEEeC---C---
Q 001163          419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEI---EAHVGSVNDLAFSYP---NKQLSVVTCGE---D---  486 (1134)
Q Consensus       419 ~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l---~~h~~~V~~v~~s~~---~~~~~l~s~s~---d---  486 (1134)
                      .....|+|.|||+++++ ..+|.|+++| ..++  .....+   .........|+|+|+   +.. ++++-+.   +   
T Consensus        29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~-lyv~~~~~~~~~~~  103 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSW-VYLYASYFAEGGHI  103 (354)
T ss_dssp             SCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCE-EEEEEEEECGGGCE
T ss_pred             CCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCc--eEeeccceeecCCCceeeEEeCCCCCcCCE-EEEEEeccCCCCCc
Confidence            35788999999985555 5669999887 3443  222111   122356889999998   553 3333332   3   


Q ss_pred             -CeEEEEECCCC-------cee-EEec---CCCcCEEEEeccccCCccEEEEecC-------------CCcEEEEecCCC
Q 001163          487 -RVIKVWDAVTG-------TKQ-YIFE---GHESPVYSICPHHKENIQFIFSTAT-------------DGKIKAWLYDNL  541 (1134)
Q Consensus       487 -~~i~iwd~~~~-------~~~-~~~~---~h~~~v~~~~~~~~~~~~~l~s~s~-------------dg~i~vwd~~~~  541 (1134)
                       ..|..|+...+       +.+ ..+.   .|.  ...++|.  ++|.++++.+.             .|.|.-++.+..
T Consensus       104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l~~~--pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~  179 (354)
T 3a9g_A          104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRIRFG--PDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR  179 (354)
T ss_dssp             EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCC--CCCEEEC--TTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC
T ss_pred             ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcC--CceEEEC--CCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC
Confidence             56777776544       111 1122   132  2456664  45566665432             134544444321


Q ss_pred             C-------ceeeecCCCCCeeEEEECc-CCCEEEEEecCCCCCeEEEEEeCCC--------C--------eeEEEecCCC
Q 001163          542 G-------SRVDYDAPGHSSTMMAYSA-DGARLFSCGTNKEGESYLVEWNESE--------G--------AVKRTYHGLG  597 (1134)
Q Consensus       542 ~-------~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~--------~--------~~~~~~~~~~  597 (1134)
                      -       ....+.........++|+| +++..++-. ..+....|.+.....        +        .++..+....
T Consensus       180 ~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~-g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~  258 (354)
T 3a9g_A          180 PPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEH-GPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSET  258 (354)
T ss_dssp             CCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEEC-CSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCC
T ss_pred             CCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEec-CCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCC
Confidence            0       0011111112346799999 566555432 222112233332111        0        1222331111


Q ss_pred             CCceEEEEEc-------CCCCEEEEEeCCCeEEEEEcCCC-cee--EEEecCCCCCCcceEEEcCCCcEEEEEE
Q 001163          598 KRSVGVVQFD-------TTKNRFLAAGDEFMIKFWDMDNV-NLL--ASIDADGGLQASPCIRFNKEGILLAVST  661 (1134)
Q Consensus       598 ~~~v~~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~-~~~--~~~~~~~~~~~v~~v~~sp~~~~l~~~~  661 (1134)
                       .....++|.       .++.++++.-..+.|...++... +..  ..+- .+....+..+++.|||.++++..
T Consensus       259 -~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          259 -WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF-KNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             -CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC-TTTSCCEEEEEECTTSCEEEEEC
T ss_pred             -cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec-cCCCCCeeEEEECCCCcEEEEEe
Confidence             246677773       46656655557778888888753 332  1221 12234678999999997766654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.89  E-value=0.077  Score=56.68  Aligned_cols=234  Identities=12%  Similarity=0.054  Sum_probs=115.4

Q ss_pred             CCCEEEEEeCC----CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC-----CeEEEEECCCCce
Q 001163          429 DGTLFGVAYSK----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED-----RVIKVWDAVTGTK  499 (1134)
Q Consensus       429 d~~~las~s~d----g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d-----~~i~iwd~~~~~~  499 (1134)
                      ++.+++.|+.+    ..+..||..+.+-. ....+......-..+.  -++.  +++.|+.+     ..+.++|..+.+-
T Consensus        15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~~d~~~~~W   89 (302)
T 2xn4_A           15 PKLMVVVGGQAPKAIRSVECYDFKEERWH-QVAELPSRRCRAGMVY--MAGL--VFAVGGFNGSLRVRTVDSYDPVKDQW   89 (302)
T ss_dssp             CEEEEEECCBSSSBCCCEEEEETTTTEEE-EECCCSSCCBSCEEEE--ETTE--EEEESCBCSSSBCCCEEEEETTTTEE
T ss_pred             CCEEEEECCCCCCCCCcEEEEcCcCCcEe-EcccCCcccccceEEE--ECCE--EEEEeCcCCCccccceEEECCCCCce
Confidence            34455556543    35788898876522 1112221111111222  2455  56677654     3688899887754


Q ss_pred             eEE--ecCCCcCEEEEeccccCCccEEEEecCCC-----cEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecC
Q 001163          500 QYI--FEGHESPVYSICPHHKENIQFIFSTATDG-----KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN  572 (1134)
Q Consensus       500 ~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~dg-----~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~  572 (1134)
                      ...  +......-..+.+    ++.+++.|+.++     .+.+||+.+..-...-..........+..-+++.++.++.+
T Consensus        90 ~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  165 (302)
T 2xn4_A           90 TSVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYD  165 (302)
T ss_dssp             EEECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEE
T ss_pred             eeCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCC
Confidence            332  2111111122222    236677776553     46677776543222211111111111122366677776654


Q ss_pred             CCC---CeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCceeEEEecCCCCCC
Q 001163          573 KEG---ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNVNLLASIDADGGLQA  644 (1134)
Q Consensus       573 ~~~---~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~  644 (1134)
                      ...   ...+.+||+.+.+....-.......-.+++. -++..++.|+.+     ..+.+||..+.+....-.....  .
T Consensus       166 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~--r  242 (302)
T 2xn4_A          166 VASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC--R  242 (302)
T ss_dssp             TTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC--C
T ss_pred             CCCCccccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc--c
Confidence            332   2458899998876544322111111122222 256677777653     4689999988765443222111  1


Q ss_pred             cceEEEcCCCcEEEEEECCC-----cEEEEEccCC
Q 001163          645 SPCIRFNKEGILLAVSTNDN-----GIKILANADG  674 (1134)
Q Consensus       645 v~~v~~sp~~~~l~~~~~dg-----~i~iw~~~~~  674 (1134)
                      ....+..-++.+++.|+.++     .+.+||+.+.
T Consensus       243 ~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          243 RNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             ccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence            11222223677777777653     4788887765

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.88  E-value=0.026  Score=61.17  Aligned_cols=152  Identities=14%  Similarity=0.125  Sum_probs=103.9

Q ss_pred             EEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCC----CCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccce-----
Q 001163          848 CFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPP----PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE-----  918 (1134)
Q Consensus       848 ~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~----~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~-----  918 (1134)
                      ....+.+|..++.+.++.||.-++......+.+...    ...|..+..+| +|.+||..+ +..|.|-.+..+.     
T Consensus        25 ~~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~  102 (452)
T 3pbp_A           25 YIFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVED  102 (452)
T ss_dssp             EEEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCC
T ss_pred             EEEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcc
Confidence            445668899999999999999998755555555543    34688999999 899999886 5579998887321     


Q ss_pred             -------EEEeccC------ccCceEEEEEeeC---CCEEEEEeCCCcEEEEECCCCccccceeeeecC---CCCCCCCC
Q 001163          919 -------VKTKLKG------HQKRITGLAFSNT---LNVLVSSGADSQLCVWSTDGWEKQASKFLTIPN---GRTASALA  979 (1134)
Q Consensus       919 -------~~~~l~~------h~~~V~~l~~s~d---~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~  979 (1134)
                             ..+.+.-      ...+|..+.|+|-   +..|++-..|++|++||+........ .+....   +.......
T Consensus       103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~e  181 (452)
T 3pbp_A          103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVND  181 (452)
T ss_dssp             HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCC
T ss_pred             cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccce
Confidence                   0112221      2577999999985   56899999999999999987432222 221111   11111146


Q ss_pred             ceEEEEcCCCCEEEE-E--eeceEEE
Q 001163          980 DTRVQFHLDQTHLLA-V--HETQIAI 1002 (1134)
Q Consensus       980 v~~l~fs~dg~~l~~-~--~d~~i~i 1002 (1134)
                      +.+++|+.++--|.+ .  .+|.|+-
T Consensus       182 v~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          182 ITDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             EEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             EEEEEEcCCCcEEEEEecCCCCCEEE
Confidence            889999998876666 3  4466653

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.85  E-value=0.063  Score=58.03  Aligned_cols=203  Identities=10%  Similarity=0.087  Sum_probs=117.6

Q ss_pred             CeeEEEEcCCCCeEEEe-------------eCCeEEEEEccC--CeEE-EEecC-----CCCCeEEEEEcCC-CCc--EE
Q 001163          845 AVPCFALSKNDSYVMSA-------------SGGKISLFNMMT--FKTM-TTFMP-----PPPAATFLAFHPQ-DNN--II  900 (1134)
Q Consensus       845 ~v~~v~~s~dg~~la~~-------------sdg~i~lwd~~~--~~~~-~~~~~-----~~~~v~~l~~sp~-~~~--~l  900 (1134)
                      ....+++.++|..++++             .+|.|.++|..+  .+.. ..+.+     .......+.+.++ ++.  ++
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            34577788888777665             378899999873  2221 12222     1235677777552 232  44


Q ss_pred             EEEeC--CCcEEEEEcccc----eEEEeccCc-cCceEEEEEeeCCCEEEEEeC---C------------CcEEEEECCC
Q 001163          901 AIGME--DSSIQIYNVRVD----EVKTKLKGH-QKRITGLAFSNTLNVLVSSGA---D------------SQLCVWSTDG  958 (1134)
Q Consensus       901 a~g~~--dg~i~iwd~~~~----~~~~~l~~h-~~~V~~l~~s~d~~~l~s~s~---D------------g~i~iwd~~~  958 (1134)
                      ++-..  +.+|.+|++..+    ..+..+.+. -...+++++.++|.+.++...   |            ..=.+|-++.
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~  210 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  210 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence            44333  467888887653    223444432 245789999999998887641   1            2233444433


Q ss_pred             CccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE--eeceEEEEeCCC-ccc--ceeeccCCCccCEEEEEEcc-CC
Q 001163          959 WEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV--HETQIAIYEAPK-LEC--LKQFVPREASGPITHATYSC-DS 1032 (1134)
Q Consensus       959 ~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~i~iwd~~~-~~~--~~~~~~~~h~~~v~~~~~s~-dg 1032 (1134)
                      ++   ...+  ..+.    .....++||||++.|.++  ..+.|..|++.. ++.  ...+.   ..+....+++.+ +|
T Consensus       211 ~~---~~~~--~~~l----~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~---~~g~PDGi~vD~e~G  278 (355)
T 3sre_A          211 ND---VRVV--AEGF----DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS---FDTLVDNISVDPVTG  278 (355)
T ss_dssp             TC---CEEE--EEEE----SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE---CSSEEEEEEECTTTC
T ss_pred             Ce---EEEe--ecCC----cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe---CCCCCceEEEeCCCC
Confidence            32   1111  1111    235789999999988885  467899999863 322  12222   145678899999 59


Q ss_pred             CEEEEEecC-CcEEEeecC--CCcceeecC
Q 001163         1033 QSIYVAFEE-GSVGVLTAS--TLRLRCRIN 1059 (1134)
Q Consensus      1033 ~~l~s~s~D-g~i~vwd~~--~~~~~~~~~ 1059 (1134)
                      .+.+++..+ +.|..|+-.  .+..+.++.
T Consensus       279 ~lwva~~~~g~~v~~~~P~~~~~s~v~rI~  308 (355)
T 3sre_A          279 DLWVGCHPNGMRIFFYDAENPPGSEVLRIQ  308 (355)
T ss_dssp             CEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred             cEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence            988766644 344444433  244444443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.83  E-value=0.77  Score=49.84  Aligned_cols=261  Identities=9%  Similarity=0.087  Sum_probs=154.6

Q ss_pred             CeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCc
Q 001163          576 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI  655 (1134)
Q Consensus       576 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~  655 (1134)
                      ...|.+.|+..+..+.+-.-.    ..+.-++|..+.++.-. ..++.|+|+++.+.+......   ..|.--.|-.+. 
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi~----AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~---e~VvfWkWis~~-  117 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWISLN-  117 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEECC----CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS---SCCCEEEEEETT-
T ss_pred             CCeEEEEECCCCCcceecccc----cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC---CCceEEEecCCC-
Confidence            346889999886554332222    22455788887777665 689999999999999888754   245555555433 


Q ss_pred             EEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCcc
Q 001163          656 LLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRN  735 (1134)
Q Consensus       656 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  735 (1134)
                      .|+..+ +..|+-|++.......+.+..|..-                                                
T Consensus       118 ~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L------------------------------------------------  148 (494)
T 1bpo_A          118 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL------------------------------------------------  148 (494)
T ss_dssp             EEEEEC-SSEEEEEESSSSCCCEEEEECCGGG------------------------------------------------
T ss_pred             eEEEEc-CCeeEEecccCCCCchhheecchhc------------------------------------------------
Confidence            444443 4589999986543444444332110                                                


Q ss_pred             CcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeecc-------CCeEEeeecCCC
Q 001163          736 FTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALAS-------NAVHKLWKWPRN  808 (1134)
Q Consensus       736 ~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~-------dg~i~vw~~~~~  808 (1134)
                                                             ....|.....+++.++++..+-       .|.+.+|..+. 
T Consensus       149 ---------------------------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-  188 (494)
T 1bpo_A          149 ---------------------------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-  188 (494)
T ss_dssp             ---------------------------------------TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-
T ss_pred             ---------------------------------------ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-
Confidence                                                   1234555566666666654432       25566665443 


Q ss_pred             CCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC---CCeEEEee----CCeEEEEEccCC-------
Q 001163          809 ERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN---DSYVMSAS----GGKISLFNMMTF-------  874 (1134)
Q Consensus       809 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d---g~~la~~s----dg~i~lwd~~~~-------  874 (1134)
                                           +....  +.|  |...-..+.+..+   .++++.+.    .+++.|.++...       
T Consensus       189 ---------------------~~sQ~--ieG--haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f  243 (494)
T 1bpo_A          189 ---------------------KVSQP--IEG--HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF  243 (494)
T ss_dssp             ---------------------CCEEE--ECC--SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCC
T ss_pred             ---------------------cccch--hee--eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCc
Confidence                                 22111  222  3222222222111   12333333    268999988532       


Q ss_pred             -eEEEE-ecC---CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCC
Q 001163          875 -KTMTT-FMP---PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADS  949 (1134)
Q Consensus       875 -~~~~~-~~~---~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg  949 (1134)
                       +.... +-.   ...--.++..++ .-.++..-+.-|.|++||+.++.++..-+--.+.|..-+-..+..-++.....|
T Consensus       244 ~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~G  322 (494)
T 1bpo_A          244 PKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKG  322 (494)
T ss_dssp             CCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTC
T ss_pred             cceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCc
Confidence             11111 111   123467888888 667888999999999999999999877666666776666665555666666778


Q ss_pred             cEEEEECCCCc
Q 001163          950 QLCVWSTDGWE  960 (1134)
Q Consensus       950 ~i~iwd~~~~~  960 (1134)
                      .|.--.++...
T Consensus       323 qVl~v~v~e~~  333 (494)
T 1bpo_A          323 QVLSVCVEEEN  333 (494)
T ss_dssp             EEEEEEECTTT
T ss_pred             eEEEEEEcccc
Confidence            77766666533

>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A

Probab=96.79  E-value=0.00093  Score=53.93  Aligned_cols=36  Identities=28%  Similarity=0.411  Sum_probs=33.3

Q ss_pred             CCcchHHHHHHHHHHhhhcCHHHHHHHHHHhcCCCc
Q 001163            1 MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFF   36 (1134)
Q Consensus         1 ~~~~~~e~~~li~q~L~~~g~~~s~~~l~~Esg~~~   36 (1134)
                      |+....||..||..||.|.||..||-+|++||+|.-
T Consensus         1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~   36 (90)
T 2xtc_A            1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQ   36 (90)
T ss_dssp             -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGG
T ss_pred             CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCc
Confidence            788999999999999999999999999999999864

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.66  E-value=0.13  Score=54.93  Aligned_cols=194  Identities=9%  Similarity=-0.002  Sum_probs=96.5

Q ss_pred             CCCEEEEEeCCC-----EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCC-----eEEEEECCCCc
Q 001163          429 DGTLFGVAYSKH-----IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR-----VIKVWDAVTGT  498 (1134)
Q Consensus       429 d~~~las~s~dg-----~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~-----~i~iwd~~~~~  498 (1134)
                      ++++++.|+.++     .+.+||..+.+-.. ...+......-..+.+  +++  +++.|+.++     .+.+||+.+.+
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~~~~~d~~~~~  135 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS-VANMRDRRSTLGAAVL--NGL--LYAVGGFDGSTGLSSVEAYNIKSNE  135 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEEE--TTE--EEEEEEECSSCEEEEEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceee-CCCCCccccceEEEEE--CCE--EEEEcCCCCCccCceEEEEeCCCCe
Confidence            677777777543     58889988765322 1122211111222222  454  566666543     57788988775


Q ss_pred             eeEE--ecCCCcCEEEEeccccCCccEEEEecCC-------CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEE
Q 001163          499 KQYI--FEGHESPVYSICPHHKENIQFIFSTATD-------GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSC  569 (1134)
Q Consensus       499 ~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~d-------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  569 (1134)
                      -...  +........++.+    ++.+++.|+.+       ..+.+||+.+..-...-..........+..-+++.++.+
T Consensus       136 W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~G  211 (302)
T 2xn4_A          136 WFHVAPMNTRRSSVGVGVV----GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVG  211 (302)
T ss_dssp             EEEECCCSSCCBSCEEEEE----TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred             EeecCCCCCcccCceEEEE----CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEEC
Confidence            4332  2111111122221    33666666543       347788876543322211111111111122366777777


Q ss_pred             ecCCCC-CeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCC-----eEEEEEcCCCce
Q 001163          570 GTNKEG-ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF-----MIKFWDMDNVNL  632 (1134)
Q Consensus       570 ~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~  632 (1134)
                      +.++.. ...+.+||+.+.+....-.......-..++. .++..++.|+.++     .+.+||..+.+.
T Consensus       212 G~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  279 (302)
T 2xn4_A          212 GHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA-VNGLLYVVGGDDGSCNLASVEYYNPTTDKW  279 (302)
T ss_dssp             CBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             CCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE-ECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence            654322 2358999998876544322211111112222 3566777776543     478888877654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.61  E-value=0.74  Score=50.10  Aligned_cols=232  Identities=9%  Similarity=0.007  Sum_probs=116.1

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeee----ecCCCCEEEEEEecC---CCceEEEEEeC-------
Q 001163          420 SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEI----EAHVGSVNDLAFSYP---NKQLSVVTCGE-------  485 (1134)
Q Consensus       420 ~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l----~~h~~~V~~v~~s~~---~~~~~l~s~s~-------  485 (1134)
                      ....|+|.|||+.|.++...|.|++++.. +........+    .........++|+|+   +.. +.++-+.       
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~-lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRR-IWLSYSEVGDDGKA   96 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCE-EEEEEEEECSSSCE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCE-EEEEEeCCCCCCCc
Confidence            56899999999944455578999999853 3321111111    122345789999996   553 3333322       


Q ss_pred             CCeEEEEECCCC--c-----eeE-Eec-----CCCcCEEEEeccccCCccEEEEecC-------------CCcEEEEecC
Q 001163          486 DRVIKVWDAVTG--T-----KQY-IFE-----GHESPVYSICPHHKENIQFIFSTAT-------------DGKIKAWLYD  539 (1134)
Q Consensus       486 d~~i~iwd~~~~--~-----~~~-~~~-----~h~~~v~~~~~~~~~~~~~l~s~s~-------------dg~i~vwd~~  539 (1134)
                      ...|..++...+  .     .+. .+.     .|.  -..++|.  ++|.+.++.+.             .|.|.-++.+
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~--pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d  172 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFD--GKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ  172 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEEC--SSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEEC--CCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC
Confidence            235666665433  1     111 111     122  2456774  45555555433             2456556554


Q ss_pred             CCC------------ceeeecCCCCCeeEEEECc-CCCEEEEEecCCCCCeEEEEEeC--------CCC-----------
Q 001163          540 NLG------------SRVDYDAPGHSSTMMAYSA-DGARLFSCGTNKEGESYLVEWNE--------SEG-----------  587 (1134)
Q Consensus       540 ~~~------------~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~--------~~~-----------  587 (1134)
                      ..-            ....+.........++|.| +|++.++ -...++...|.+...        ..+           
T Consensus       173 G~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~-d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~  251 (353)
T 2g8s_A          173 GEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLN-EHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPE  251 (353)
T ss_dssp             SCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEE-EECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTT
T ss_pred             CCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEE-ecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCc
Confidence            220            0111111112467899999 5554443 322211122322110        000           


Q ss_pred             ----------eeEEEecCCCCCceEEEEEcC-------CCCEEEEEeCCCeEEEEEcCCCceeEEEecC-CCCCCcceEE
Q 001163          588 ----------AVKRTYHGLGKRSVGVVQFDT-------TKNRFLAAGDEFMIKFWDMDNVNLLASIDAD-GGLQASPCIR  649 (1134)
Q Consensus       588 ----------~~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~  649 (1134)
                                .++..+..+.  ....+.|..       ++.++++.-..+.|...++..++.+.....- .....+..++
T Consensus       252 ~~~~~~~~~~~P~~~~~~~~--ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~  329 (353)
T 2g8s_A          252 AKGEIVAGTEQPVFYWKDSP--AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVR  329 (353)
T ss_dssp             CCBSSCTTSCCCSEEESSCC--CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEE
T ss_pred             ccCCCCCCccCCeEEeCCCc--CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEE
Confidence                      0111222111  355567753       4556655557788888888766544332211 1123678999


Q ss_pred             EcCCCcEEEEE
Q 001163          650 FNKEGILLAVS  660 (1134)
Q Consensus       650 ~sp~~~~l~~~  660 (1134)
                      +.|||.++++.
T Consensus       330 ~~pdG~lyv~t  340 (353)
T 2g8s_A          330 TGPDGYLYVLT  340 (353)
T ss_dssp             ECTTSCEEEEE
T ss_pred             ECCCCcEEEEE
Confidence            99999866643

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.56  E-value=0.083  Score=57.32  Aligned_cols=149  Identities=16%  Similarity=0.161  Sum_probs=92.6

Q ss_pred             CCcEEEEEeCCCcEEEEEcccceEEEeccCc----cCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccc---------
Q 001163          896 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGH----QKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQ---------  962 (1134)
Q Consensus       896 ~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h----~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~---------  962 (1134)
                      ++.-++++- ++.||.-++..+...+.+...    -+.|..+..||+|++||..+. .+|.|-.+..+...         
T Consensus        31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~  108 (452)
T 3pbp_A           31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDA  108 (452)
T ss_dssp             TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHT
T ss_pred             CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccc
Confidence            444444443 467777777643333333321    235788999999999999875 46999888733211         


Q ss_pred             -cceeeeecCCCCCCCCCceEEEEcCCC---CEEEE-EeeceEEEEeCCCcccc--------eeeccCCCccCEEEEEEc
Q 001163          963 -ASKFLTIPNGRTASALADTRVQFHLDQ---THLLA-VHETQIAIYEAPKLECL--------KQFVPREASGPITHATYS 1029 (1134)
Q Consensus       963 -~~~~~~~~~~~~~~~~~v~~l~fs~dg---~~l~~-~~d~~i~iwd~~~~~~~--------~~~~~~~h~~~v~~~~~s 1029 (1134)
                       ..+...+..........|..+.|+|-+   ..|++ ..|+.|++||+......        ..+....+...|.+++|.
T Consensus       109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg  188 (452)
T 3pbp_A          109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFS  188 (452)
T ss_dssp             TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEEC
T ss_pred             cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEc
Confidence             111222221111112679999999953   45666 79999999999863211        112222334789999999


Q ss_pred             cCCCEEEEEe--cCCcEEE
Q 001163         1030 CDSQSIYVAF--EEGSVGV 1046 (1134)
Q Consensus      1030 ~dg~~l~s~s--~Dg~i~v 1046 (1134)
                      .+|-.|...+  ..|-|+-
T Consensus       189 ~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          189 KDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             TTSSCEEEEECTTSCEEEE
T ss_pred             CCCcEEEEEecCCCCCEEE
Confidence            9988888755  7787753

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.54  E-value=1.1  Score=47.98  Aligned_cols=99  Identities=10%  Similarity=0.103  Sum_probs=58.8

Q ss_pred             eeEEEEcCCCCeEEEee--CCeEEEEEccCCe------------------EEEEecCCCCCeEEEEEcCCCCcEEEEEeC
Q 001163          846 VPCFALSKNDSYVMSAS--GGKISLFNMMTFK------------------TMTTFMPPPPAATFLAFHPQDNNIIAIGME  905 (1134)
Q Consensus       846 v~~v~~s~dg~~la~~s--dg~i~lwd~~~~~------------------~~~~~~~~~~~v~~l~~sp~~~~~la~g~~  905 (1134)
                      ...++|+|+|.+.++-.  ++.=.|--+..+.                  ++..+..+......++|..  +.+++..-.
T Consensus       204 p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~--g~~~~~~l~  281 (347)
T 3das_A          204 VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE--GSVWMAGLR  281 (347)
T ss_dssp             CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET--TEEEEEEST
T ss_pred             cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc--Cceeecccc
Confidence            45899999988766553  3222222221111                  1222322224567788874  566666666


Q ss_pred             CCcEEEEEcccceE----EEeccCccCceEEEEEeeCCCEEEEEe
Q 001163          906 DSSIQIYNVRVDEV----KTKLKGHQKRITGLAFSNTLNVLVSSG  946 (1134)
Q Consensus       906 dg~i~iwd~~~~~~----~~~l~~h~~~V~~l~~s~d~~~l~s~s  946 (1134)
                      .+.|....+..+..    ...+.+...++.+|+..|||.++++.+
T Consensus       282 ~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          282 GERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             TCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             CCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            66777677765432    233445557899999999998777654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.52  E-value=0.22  Score=53.49  Aligned_cols=230  Identities=9%  Similarity=-0.043  Sum_probs=112.6

Q ss_pred             EEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeC-----C------CeEEEEECCCCcee
Q 001163          432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-----D------RVIKVWDAVTGTKQ  500 (1134)
Q Consensus       432 ~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~-----d------~~i~iwd~~~~~~~  500 (1134)
                      +++.|+  ..+.+||..+++-..  ..+..........+...+++  +++.|+.     .      ..+.+||..+++-.
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~   80 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYC--ASLSSQVPKNHVSLVTKENQ--VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL   80 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEE--EECCCCSCSSEEEEECTTCC--EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE
T ss_pred             EEEEcC--CceEEECCCCCeEec--CCCCCCCCccceEEEEECCE--EEEEcCcccCCCCCccccccceEEecCCCCeEE
Confidence            344455  568999998876322  22332222223333344565  5666663     1      12778898877543


Q ss_pred             EE--ecCCCcCEEEEeccccCCccEEEEecCC--------CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEe
Q 001163          501 YI--FEGHESPVYSICPHHKENIQFIFSTATD--------GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCG  570 (1134)
Q Consensus       501 ~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~d--------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  570 (1134)
                      ..  +......-..+.+    ++.+++.|+.+        ..+.+||..+..-...-..+.......+..-+++.++.++
T Consensus        81 ~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG  156 (315)
T 4asc_A           81 GMPPLPSPRCLFGLGEA----LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGG  156 (315)
T ss_dssp             ECCCBSSCEESCEEEEE----TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECC
T ss_pred             ECCCCCcchhceeEEEE----CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeC
Confidence            21  1111111111111    33666777632        3578888775432221111122111222234666777776


Q ss_pred             cCC--CCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCC-----eEEEEEcCCCceeEEEecCCCCC
Q 001163          571 TNK--EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF-----MIKFWDMDNVNLLASIDADGGLQ  643 (1134)
Q Consensus       571 ~~~--~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~  643 (1134)
                      .+.  .....+.+||+.+.+....-.......-.+++. -++..++.|+.++     .+.+||..+.+....-.....  
T Consensus       157 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--  233 (315)
T 4asc_A          157 KGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE--  233 (315)
T ss_dssp             BCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC--
T ss_pred             CCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc--
Confidence            521  112458899998876543222111111122222 2566777777543     588899988765444322211  


Q ss_pred             CcceEEEcCCCcEEEEEECCC--------------cEEEEEccCC
Q 001163          644 ASPCIRFNKEGILLAVSTNDN--------------GIKILANADG  674 (1134)
Q Consensus       644 ~v~~v~~sp~~~~l~~~~~dg--------------~i~iw~~~~~  674 (1134)
                      .....+..-++.+++.|+.++              .+.+||+.+.
T Consensus       234 r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  278 (315)
T 4asc_A          234 RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK  278 (315)
T ss_dssp             CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred             ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence            111122223567777777532              3566776654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.48  E-value=1.3  Score=47.82  Aligned_cols=207  Identities=12%  Similarity=0.076  Sum_probs=114.0

Q ss_pred             CEEEEEEcCCCCEEEEEe------------CCCEEEEEEccCCc-eeeeeeeeec-----CCCCEEEEEEec--CCCceE
Q 001163          420 SVNRVMWSPDGTLFGVAY------------SKHIVHLYTYHGGD-ELRNHLEIEA-----HVGSVNDLAFSY--PNKQLS  479 (1134)
Q Consensus       420 ~V~~l~~spd~~~las~s------------~dg~v~iwd~~~~~-~~~~~~~l~~-----h~~~V~~v~~s~--~~~~~~  479 (1134)
                      ..-.++..|+|..+++++            .+|.|.++|.++.. ..... .+.+     .......+.+.+  ++...+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            344566788876655552            68999999997431 12222 2333     234667777766  454323


Q ss_pred             EEEEeC--CCeEEEEECCCCc----eeEEecCC-CcCEEEEeccccCCccEEEEecC-----------------CCcEEE
Q 001163          480 VVTCGE--DRVIKVWDAVTGT----KQYIFEGH-ESPVYSICPHHKENIQFIFSTAT-----------------DGKIKA  535 (1134)
Q Consensus       480 l~s~s~--d~~i~iwd~~~~~----~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~s~-----------------dg~i~v  535 (1134)
                      ++.-..  +.+|.+|++..+.    .+.++.+. -...+.+.+.+  +|.+.++...                 .|.|..
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~--~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr  207 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG--PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY  207 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE--TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC--CCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence            333333  5678888766532    22344432 23467777754  4466666431                 234444


Q ss_pred             EecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCC-Cee--EEEecCCCCCceEEEEEcC-CCC
Q 001163          536 WLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE-GAV--KRTYHGLGKRSVGVVQFDT-TKN  611 (1134)
Q Consensus       536 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~v~~~~~~~-~~~  611 (1134)
                      +|.  .+... +...-..-+.++|+||++.++.+..   ....|+.|++.. ++.  .+.+..  ......+++.+ +|+
T Consensus       208 ~d~--~~~~~-~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~~~--~g~PDGi~vD~e~G~  279 (355)
T 3sre_A          208 YSP--NDVRV-VAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLSF--DTLVDNISVDPVTGD  279 (355)
T ss_dssp             ECT--TCCEE-EEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEEC--SSEEEEEEECTTTCC
T ss_pred             EEC--CeEEE-eecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEEeC--CCCCceEEEeCCCCc
Confidence            443  32222 2212235678999999999888753   244688898753 332  223321  23567789999 588


Q ss_pred             EEEEEeCC-CeEEEEEcC--CCceeEEEe
Q 001163          612 RFLAAGDE-FMIKFWDMD--NVNLLASID  637 (1134)
Q Consensus       612 ~l~~~~~d-g~i~iwd~~--~~~~~~~~~  637 (1134)
                      +.+++..+ +.|..|+..  .+..+..+.
T Consensus       280 lwva~~~~g~~v~~~~P~~~~~s~v~rI~  308 (355)
T 3sre_A          280 LWVGCHPNGMRIFFYDAENPPGSEVLRIQ  308 (355)
T ss_dssp             EEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred             EEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence            87766533 345555544  244444444

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.47  E-value=0.67  Score=49.57  Aligned_cols=235  Identities=9%  Similarity=-0.030  Sum_probs=115.7

Q ss_pred             EEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeC-----C------
Q 001163          371 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS-----K------  439 (1134)
Q Consensus       371 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~-----d------  439 (1134)
                      |++.|+  ..+.+||..+++-         ...  .       +........+.+...++++++.|+.     .      
T Consensus         7 l~~~GG--~~~~~yd~~~~~W---------~~~--~-------~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~   66 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANEC---------YCA--S-------LSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMS   66 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEE---------EEE--E-------CCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEE
T ss_pred             EEEEcC--CceEEECCCCCeE---------ecC--C-------CCCCCCccceEEEEECCEEEEEcCcccCCCCCccccc
Confidence            556666  5699999988752         210  0       1111112223334457888888873     1      


Q ss_pred             CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC--------CeEEEEECCCCceeE--EecCCCcC
Q 001163          440 HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED--------RVIKVWDAVTGTKQY--IFEGHESP  509 (1134)
Q Consensus       440 g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d--------~~i~iwd~~~~~~~~--~~~~h~~~  509 (1134)
                      ..+.+||..+++-. ....+......-..+.+  +++  +++.|+.+        ..+.++|..+++-..  .+......
T Consensus        67 ~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~  141 (315)
T 4asc_A           67 AYFLQFDHLDSEWL-GMPPLPSPRCLFGLGEA--LNS--IYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG  141 (315)
T ss_dssp             EEEEEEETTTTEEE-ECCCBSSCEESCEEEEE--TTE--EEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred             cceEEecCCCCeEE-ECCCCCcchhceeEEEE--CCE--EEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc
Confidence            12778888876522 11112111111112222  444  55666632        468899988775332  12111111


Q ss_pred             EEEEeccccCCccEEEEecC-C-----CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCC-CeEEEEE
Q 001163          510 VYSICPHHKENIQFIFSTAT-D-----GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG-ESYLVEW  582 (1134)
Q Consensus       510 v~~~~~~~~~~~~~l~s~s~-d-----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~i~~w  582 (1134)
                      -.++.    -++.+++.|+. +     ..+.+||..+..-...-..........+..-+++.++.++.+..+ ...+.+|
T Consensus       142 ~~~~~----~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~y  217 (315)
T 4asc_A          142 HTVLS----HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVY  217 (315)
T ss_dssp             CEEEE----ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEE
T ss_pred             eeEEE----ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEE
Confidence            11222    12356777765 2     457888877543222211111111111222366777777754432 2358899


Q ss_pred             eCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC--------------CeEEEEEcCCCceeEE
Q 001163          583 NESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE--------------FMIKFWDMDNVNLLAS  635 (1134)
Q Consensus       583 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~iwd~~~~~~~~~  635 (1134)
                      |+.+.+....-.......-.+++. -++..++.|+.+              ..+.+||..+.+....
T Consensus       218 d~~~~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  283 (315)
T 4asc_A          218 SITDNKWAPFEAFPQERSSLSLVS-LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV  283 (315)
T ss_dssp             ETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred             ECCCCeEEECCCCCCcccceeEEE-ECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence            998876554332221111122222 255677777653              2467888887765444

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.41  E-value=0.23  Score=53.10  Aligned_cols=233  Identities=8%  Similarity=-0.001  Sum_probs=115.4

Q ss_pred             CCCCEEEEEeCC----CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeC----C-----CeEEEEEC
Q 001163          428 PDGTLFGVAYSK----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE----D-----RVIKVWDA  494 (1134)
Q Consensus       428 pd~~~las~s~d----g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~----d-----~~i~iwd~  494 (1134)
                      -++.+++.|+.+    ..+.+||..+++-.. ...+......- +++. .++.  +++.|+.    +     ..+.++|.
T Consensus        23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~-~~~~-~~~~--lyv~GG~~~~~~~~~~~~~~~~~d~   97 (308)
T 1zgk_A           23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLR-LADLQVPRSGL-AGCV-VGGL--LYAVGGRNNSPDGNTDSSALDCYNP   97 (308)
T ss_dssp             CCCCEEEECCBSSSBCCCEEEEETTTTEEEE-CCCCSSCCBSC-EEEE-ETTE--EEEECCEEEETTEEEECCCEEEEET
T ss_pred             CCCEEEEEeCcCCCCcceEEEEcCCCCeEeE-CCCCCcccccc-eEEE-ECCE--EEEECCCcCCCCCCeecceEEEECC
Confidence            366777777642    358899988765322 11121111111 2222 2454  5666654    2     46888998


Q ss_pred             CCCceeEE--ecCCCcCEEEEeccccCCccEEEEecCC-----CcEEEEecCCCCceeeecCCCC--CeeEEEECcCCCE
Q 001163          495 VTGTKQYI--FEGHESPVYSICPHHKENIQFIFSTATD-----GKIKAWLYDNLGSRVDYDAPGH--SSTMMAYSADGAR  565 (1134)
Q Consensus       495 ~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~  565 (1134)
                      .+.+-...  +......-..+.+    ++.+++.|+.+     ..+.+||..+..-...-.....  ....+.+  +++.
T Consensus        98 ~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i  171 (308)
T 1zgk_A           98 MTNQWSPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLL  171 (308)
T ss_dssp             TTTEEEECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEE
T ss_pred             CCCeEeECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEE
Confidence            87754321  1111111122222    33667776643     3577888765432222111111  1122222  6677


Q ss_pred             EEEEecCCCC-CeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCceeEEEecC
Q 001163          566 LFSCGTNKEG-ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNVNLLASIDAD  639 (1134)
Q Consensus       566 l~~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~  639 (1134)
                      ++.++.++.. ...+.+||+.+.+....-.......-.+++.. ++..++.|+.+     ..+.+||+.+.+....-...
T Consensus       172 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p  250 (308)
T 1zgk_A          172 YAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMK  250 (308)
T ss_dssp             EEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCS
T ss_pred             EEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCC
Confidence            7777654332 34588999988765432211111111222222 56667777653     56899999887654332221


Q ss_pred             CCCCCcceEEEcCCCcEEEEEECC-----CcEEEEEccCC
Q 001163          640 GGLQASPCIRFNKEGILLAVSTND-----NGIKILANADG  674 (1134)
Q Consensus       640 ~~~~~v~~v~~sp~~~~l~~~~~d-----g~i~iw~~~~~  674 (1134)
                      ...... +++. -++++++.|+.+     ..+.+||+.+.
T Consensus       251 ~~r~~~-~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          251 HRRSAL-GITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             SCCBSC-EEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             CCccce-EEEE-ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence            111111 2222 256777777654     35677877665

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.35  E-value=0.81  Score=51.64  Aligned_cols=104  Identities=14%  Similarity=0.136  Sum_probs=62.9

Q ss_pred             CCeeEEEEcCCCCeEEEeeC-CeEEEEEccCCeE--EEEecC------CCCCeEEEEEcCC---CCcEEEEEeC------
Q 001163          844 DAVPCFALSKNDSYVMSASG-GKISLFNMMTFKT--MTTFMP------PPPAATFLAFHPQ---DNNIIAIGME------  905 (1134)
Q Consensus       844 ~~v~~v~~s~dg~~la~~sd-g~i~lwd~~~~~~--~~~~~~------~~~~v~~l~~sp~---~~~~la~g~~------  905 (1134)
                      ...+.++|.|||+++++-.. +.|++++..+++.  +..+..      .......|+|+|+   ++.+.++-+.      
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            34579999999998888775 4798888655543  223321      2356779999994   3444444332      


Q ss_pred             ------CCcEEEEEcccc-------eEEE-eccC-ccCceEEEEEeeCCCEEEEEeC
Q 001163          906 ------DSSIQIYNVRVD-------EVKT-KLKG-HQKRITGLAFSNTLNVLVSSGA  947 (1134)
Q Consensus       906 ------dg~i~iwd~~~~-------~~~~-~l~~-h~~~V~~l~~s~d~~~l~s~s~  947 (1134)
                            ...|.-|++..+       +.+. .+.. .......|+|.|||.+.++.+.
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                  234555555321       1221 1221 1123678999999998887664

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.33  E-value=0.29  Score=52.32  Aligned_cols=234  Identities=11%  Similarity=0.054  Sum_probs=119.3

Q ss_pred             cCCCCeEEEee-C----CeEEEEEccCCeEEEEecCCCCC-eEEEEEcCCCCcEEEEEeC----C-----CcEEEEEccc
Q 001163          852 SKNDSYVMSAS-G----GKISLFNMMTFKTMTTFMPPPPA-ATFLAFHPQDNNIIAIGME----D-----SSIQIYNVRV  916 (1134)
Q Consensus       852 s~dg~~la~~s-d----g~i~lwd~~~~~~~~~~~~~~~~-v~~l~~sp~~~~~la~g~~----d-----g~i~iwd~~~  916 (1134)
                      .-++.+++.|+ +    ..+.+||..+.+-...-...... -.+++..  ++++++.|+.    +     ..+.+||..+
T Consensus        22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~   99 (308)
T 1zgk_A           22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMT   99 (308)
T ss_dssp             CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred             CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence            34556666665 2    45899998776533221111111 1222332  5678888776    2     3688899887


Q ss_pred             ceEEE--eccCccCceEEEEEeeCCCEEEEEeCC-----CcEEEEECCCCccccceeee-ecCCCCCCCCCceEEEEcCC
Q 001163          917 DEVKT--KLKGHQKRITGLAFSNTLNVLVSSGAD-----SQLCVWSTDGWEKQASKFLT-IPNGRTASALADTRVQFHLD  988 (1134)
Q Consensus       917 ~~~~~--~l~~h~~~V~~l~~s~d~~~l~s~s~D-----g~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~v~~l~fs~d  988 (1134)
                      .+-..  .+......-..+.  -++++++.|+.+     ..+.+||+.+.+   +..+. .+...    .....+.+  +
T Consensus       100 ~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~---W~~~~~~p~~r----~~~~~~~~--~  168 (308)
T 1zgk_A          100 NQWSPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDE---WHLVAPMLTRR----IGVGVAVL--N  168 (308)
T ss_dssp             TEEEECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTTE---EEECCCCSSCC----BSCEEEEE--T
T ss_pred             CeEeECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCCe---EeECCCCCccc----cceEEEEE--C
Confidence            65332  2221111112222  367777777654     358889987744   22221 11111    11222222  5


Q ss_pred             CCEEEEE-ee-----ceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecC-----CcEEEeecCCCcceee
Q 001163          989 QTHLLAV-HE-----TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEE-----GSVGVLTASTLRLRCR 1057 (1134)
Q Consensus       989 g~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D-----g~i~vwd~~~~~~~~~ 1057 (1134)
                      +++++.+ .+     ..+.+||..+.+....-........-..+.+  ++++++.|+.+     ..+.+||+.+.+....
T Consensus       169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~  246 (308)
T 1zgk_A          169 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFV  246 (308)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred             CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEEC
Confidence            6666653 32     4689999887653322111111111122222  77777777765     5689999988765422


Q ss_pred             cCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCC-----cEEEEeCCCCCCCccCCC
Q 001163         1058 INPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDG-----GVYIIEPLEAEGRWGTSP 1112 (1134)
Q Consensus      1058 ~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg-----~v~vW~~~~~~~~~~~~~ 1112 (1134)
                       .   .+|.....  ..+++.    ++.+++.|+.++     .+.+||+..  .+|...+
T Consensus       247 -~---~~p~~r~~--~~~~~~----~~~i~v~GG~~~~~~~~~v~~yd~~~--~~W~~~~  294 (308)
T 1zgk_A          247 -A---PMKHRRSA--LGITVH----QGRIYVLGGYDGHTFLDSVECYDPDT--DTWSEVT  294 (308)
T ss_dssp             -C---CCSSCCBS--CEEEEE----TTEEEEECCBCSSCBCCEEEEEETTT--TEEEEEE
T ss_pred             -C---CCCCCccc--eEEEEE----CCEEEEEcCcCCCcccceEEEEcCCC--CEEeecC
Confidence             1   11211111  122222    567888887654     467777765  4587643

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.32  E-value=0.013  Score=62.82  Aligned_cols=202  Identities=9%  Similarity=0.032  Sum_probs=109.8

Q ss_pred             cEEEEEeCCCcEEEEEcccceEEEeccCc-cCceEEEEE---eeCCCEEEEE-eCCCcEEEEECCCCccccceeeeecCC
Q 001163          898 NIIAIGMEDSSIQIYNVRVDEVKTKLKGH-QKRITGLAF---SNTLNVLVSS-GADSQLCVWSTDGWEKQASKFLTIPNG  972 (1134)
Q Consensus       898 ~~la~g~~dg~i~iwd~~~~~~~~~l~~h-~~~V~~l~~---s~d~~~l~s~-s~Dg~i~iwd~~~~~~~~~~~~~~~~~  972 (1134)
                      .++++++.||.|.-+|..+|+.+.+++.. ..++....-   ..++..++.. +.||.|..++..+|...-  ...+..-
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~--~~~~~~l   88 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKL--PLSIRQL   88 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEE--EEEHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEe--eeccccc
Confidence            47889999999999999999998887654 122222110   0123333333 589999999988764321  1111110


Q ss_pred             CCCCCCCceE---EEE------cCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccC-----EEEEEEc-----cCCC
Q 001163          973 RTASALADTR---VQF------HLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGP-----ITHATYS-----CDSQ 1033 (1134)
Q Consensus       973 ~~~~~~~v~~---l~f------s~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~-----v~~~~~s-----~dg~ 1033 (1134)
                      ...  .++..   ...      +.+|..++.+.++++.-.|+.+|+.+..+....-.+.     ..|....     ..+.
T Consensus        89 v~~--SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~  166 (339)
T 2be1_A           89 VST--SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECEN  166 (339)
T ss_dssp             HTT--CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CC
T ss_pred             eec--cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCC
Confidence            000  01110   001      2455555557999999999999999988874321111     1112111     1245


Q ss_pred             EEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEEEeCCCCCCCc
Q 001163         1034 SIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAEGRW 1108 (1134)
Q Consensus      1034 ~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~~~~~ 1108 (1134)
                      .|+.+..+..+.+.+ .+|+ +..+....+.+......+.. .... ..|+.+ +.++.||.|.-.|...+...|
T Consensus       167 ~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~-~~~~-s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          167 MIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLAL-QNTF-SKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHT-TCSS-CSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             eEEEecceEEEEEEC-CCCC-eEEEeccccccccccccccc-cccc-ccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            788888888888888 5565 43332111111110000000 0000 113455 457889999999998888888

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.99  E-value=0.89  Score=48.68  Aligned_cols=200  Identities=10%  Similarity=-0.005  Sum_probs=95.3

Q ss_pred             EEcCCCCEEEEEeC----CC-------EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC-------
Q 001163          425 MWSPDGTLFGVAYS----KH-------IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED-------  486 (1134)
Q Consensus       425 ~~spd~~~las~s~----dg-------~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d-------  486 (1134)
                      +...++.+++.|+.    ++       .+.+||..+++-.. ...+.........+.+  +++  +++.|+.+       
T Consensus        52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~  126 (318)
T 2woz_A           52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVG-LPPLPSARCLFGLGEV--DDK--IYVVAGKDLQTEASL  126 (318)
T ss_dssp             EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEE-CSCBSSCBCSCEEEEE--TTE--EEEEEEEBTTTCCEE
T ss_pred             EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEE-CCCCCccccccceEEE--CCE--EEEEcCccCCCCccc
Confidence            34457888888873    12       27778887765322 1122211111122222  444  55566543       


Q ss_pred             CeEEEEECCCCceeEE--ecCCCcCEEEEeccccCCccEEEEecC------CCcEEEEecCCCCceeeecCCCCCe-eEE
Q 001163          487 RVIKVWDAVTGTKQYI--FEGHESPVYSICPHHKENIQFIFSTAT------DGKIKAWLYDNLGSRVDYDAPGHSS-TMM  557 (1134)
Q Consensus       487 ~~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~v-~~~  557 (1134)
                      ..+.++|..+.+-...  +......-.++.    .++.+++.|+.      -..+.+||+.+..-...-....... .++
T Consensus       127 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~----~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~  202 (318)
T 2woz_A          127 DSVLCYDPVAAKWSEVKNLPIKVYGHNVIS----HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGV  202 (318)
T ss_dssp             EEEEEEETTTTEEEEECCCSSCEESCEEEE----ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred             ceEEEEeCCCCCEeECCCCCCcccccEEEE----ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceE
Confidence            3577889887654332  111111111111    23366666664      2358888887643222211111111 122


Q ss_pred             EECcCCCEEEEEecCCCC-CeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC--------------CeE
Q 001163          558 AYSADGARLFSCGTNKEG-ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE--------------FMI  622 (1134)
Q Consensus       558 ~~s~~~~~l~~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i  622 (1134)
                      + .-+++.++.++.+..+ ...+.+||+.+.+....-.......-.+++ ..++..++.|+.+              ..+
T Consensus       203 ~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v  280 (318)
T 2woz_A          203 A-IHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLV-SLAGSLYAIGGFAMIQLESKEFAPTEVNDI  280 (318)
T ss_dssp             E-EETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEE-EETTEEEEECCBCCBC----CCBCCBCCCE
T ss_pred             E-EECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEE-EECCEEEEECCeeccCCCCceeccceeeeE
Confidence            2 2366777777654322 245788999887644322111111111222 2345666666643              346


Q ss_pred             EEEEcCCCceeEE
Q 001163          623 KFWDMDNVNLLAS  635 (1134)
Q Consensus       623 ~iwd~~~~~~~~~  635 (1134)
                      .+||..+.+....
T Consensus       281 ~~yd~~~~~W~~~  293 (318)
T 2woz_A          281 WKYEDDKKEWAGM  293 (318)
T ss_dssp             EEEETTTTEEEEE
T ss_pred             EEEeCCCCEehhh
Confidence            7777777655443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.89  E-value=0.22  Score=62.42  Aligned_cols=199  Identities=13%  Similarity=0.128  Sum_probs=128.1

Q ss_pred             EEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEccc-ceEEEeccCc
Q 001163          848 CFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV-DEVKTKLKGH  926 (1134)
Q Consensus       848 ~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~-~~~~~~l~~h  926 (1134)
                      +.-++|..+.+|.-...++.|+|+++.+.+..+.- ...|..=.|-.  .+.|+..+ +..|+-|++.. ..+++.+..|
T Consensus        70 sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~  145 (1630)
T 1xi4_A           70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH  145 (1630)
T ss_pred             hhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhcc
Confidence            45577888888887788899999998888777663 34566667764  34555554 55799999964 2444555555


Q ss_pred             ----cCceEEEEEeeCCCEEEEEe-------CCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEE---cCCCCEE
Q 001163          927 ----QKRITGLAFSNTLNVLVSSG-------ADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQF---HLDQTHL  992 (1134)
Q Consensus       927 ----~~~V~~l~~s~d~~~l~s~s-------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~f---s~dg~~l  992 (1134)
                          ...|..-..+++.++++..|       ..|.+.+|+++.+.      .+..+||..   .-..+.+   .+....+
T Consensus       146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~------sQ~iegha~---~F~~~~~~~~~~~~~l~  216 (1630)
T 1xi4_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA---SFAQFKMEGNAEESTLF  216 (1630)
T ss_pred             hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc------chhhhHhHh---hhheeccCCCCCCceEE
Confidence                45677778889999888654       35789999988743      344455542   1111111   1112233


Q ss_pred             EEEe----eceEEEEeCCCc---c-c-----ceeec-cCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeec
Q 001163          993 LAVH----ETQIAIYEAPKL---E-C-----LKQFV-PREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRI 1058 (1134)
Q Consensus       993 ~~~~----d~~i~iwd~~~~---~-~-----~~~~~-~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~ 1058 (1134)
                      +.+.    .+.+.|-++...   . .     +..+. +..-.+-..++..|+.-..+...+.-|.|.+||+.||..+.+-
T Consensus       217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~  296 (1630)
T 1xi4_A          217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN  296 (1630)
T ss_pred             EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence            3232    368888888543   1 1     11111 1112444567788888888888889999999999999987554


Q ss_pred             C
Q 001163         1059 N 1059 (1134)
Q Consensus      1059 ~ 1059 (1134)
                      .
T Consensus       297 r  297 (1630)
T 1xi4_A          297 R  297 (1630)
T ss_pred             c
Confidence            4

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.88  E-value=0.42  Score=52.34  Aligned_cols=242  Identities=11%  Similarity=0.068  Sum_probs=114.4

Q ss_pred             CCCeEEEee--CCeEEEEEccC----CeEEEEec-CCCCCeEEEEEcCCCCcEEEEEeC-C---------CcEEEEEccc
Q 001163          854 NDSYVMSAS--GGKISLFNMMT----FKTMTTFM-PPPPAATFLAFHPQDNNIIAIGME-D---------SSIQIYNVRV  916 (1134)
Q Consensus       854 dg~~la~~s--dg~i~lwd~~~----~~~~~~~~-~~~~~v~~l~~sp~~~~~la~g~~-d---------g~i~iwd~~~  916 (1134)
                      ++++++.|+  ...+.++|..+    ++.+..+. .......++.+   ++++++.|+. +         ..+.+||..+
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~   95 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT   95 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence            677777775  46799999864    22222222 11112223332   5678888776 2         3688999887


Q ss_pred             ceEEEeccCc-cCceEEEEEeeCCCEEEEEeCC---------------------------------------CcEEEEEC
Q 001163          917 DEVKTKLKGH-QKRITGLAFSNTLNVLVSSGAD---------------------------------------SQLCVWST  956 (1134)
Q Consensus       917 ~~~~~~l~~h-~~~V~~l~~s~d~~~l~s~s~D---------------------------------------g~i~iwd~  956 (1134)
                      .+-...-... .......+...++++++.||.+                                       ..+.+||+
T Consensus        96 ~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~  175 (357)
T 2uvk_A           96 NSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP  175 (357)
T ss_dssp             TEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred             CcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence            6533221111 1112222233578888888865                                       46888998


Q ss_pred             CCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-e------eceEEEEeC--CCcccceeeccCCCccCEEEEE
Q 001163          957 DGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-H------ETQIAIYEA--PKLECLKQFVPREASGPITHAT 1027 (1134)
Q Consensus       957 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~------d~~i~iwd~--~~~~~~~~~~~~~h~~~v~~~~ 1027 (1134)
                      .+.+   +..+.......   ..-.+++. -++++++.+ .      ...+.+||+  .+.+....-............+
T Consensus       176 ~~~~---W~~~~~~p~~~---~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~  248 (357)
T 2uvk_A          176 STQQ---WSYAGESPWYG---TAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFA  248 (357)
T ss_dssp             TTTE---EEEEEECSSCC---CBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEE
T ss_pred             CCCc---EEECCCCCCCC---cccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceE
Confidence            7754   22222111000   01022222 255555553 2      235777877  4333221111000011111112


Q ss_pred             EccCCCEEEEEecC----------------------CcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCC
Q 001163         1028 YSCDSQSIYVAFEE----------------------GSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPN 1085 (1134)
Q Consensus      1028 ~s~dg~~l~s~s~D----------------------g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~ 1085 (1134)
                      ...++++++.|+.+                      ..+.+||..+.+.... .   .+|.....   ..++.+   +++
T Consensus       249 ~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~-~---~~p~~r~~---~~~~~~---~~~  318 (357)
T 2uvk_A          249 GISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS-G---ELSQGRAY---GVSLPW---NNS  318 (357)
T ss_dssp             EEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE-E---ECSSCCBS---SEEEEE---TTE
T ss_pred             EEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC-C---CCCCCccc---ceeEEe---CCE
Confidence            33477777777743                      2577899887765432 1   12222111   111221   578


Q ss_pred             EEEEEecCCc----EEEEeCCCCCCCccCCCCCC
Q 001163         1086 QFALGLTDGG----VYIIEPLEAEGRWGTSPPNE 1115 (1134)
Q Consensus      1086 ~l~s~~~Dg~----v~vW~~~~~~~~~~~~~~~~ 1115 (1134)
                      +++.|+.++.    =.+|-+.-..++|....|..
T Consensus       319 i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~  352 (357)
T 2uvk_A          319 LLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEH  352 (357)
T ss_dssp             EEEEEEECGGGCEEEEEEEEEC-CCSCEEEC---
T ss_pred             EEEEeeeCCCCCEeeeEEEEEEcCcEeEeeeccc
Confidence            8888986542    23554444456687766544

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.77  E-value=0.61  Score=50.01  Aligned_cols=230  Identities=12%  Similarity=0.018  Sum_probs=109.8

Q ss_pred             EEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeC----CC-------eEEEEECCCCcee
Q 001163          432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE----DR-------VIKVWDAVTGTKQ  500 (1134)
Q Consensus       432 ~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~----d~-------~i~iwd~~~~~~~  500 (1134)
                      +++.|+.  .+..||..+++-..  ..+..........+...++.  +++.|+.    ++       .+.++|..+++-.
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~--~~~~~~~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~   91 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYL--TALAEQIPRNHSSIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWV   91 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEE--EEECTTSCSSEEEEECSSSC--EEEEESSCC-------CCCBEEEEEETTTTEEE
T ss_pred             hhhcccc--ceEEECCCCCceec--ccCCccCCccceEEEEECCE--EEEECCcccCccccCCCccccEEEEeCCCCcEE
Confidence            3444443  37899998876433  12222112222223344555  5666662    11       2778888776543


Q ss_pred             EE--ecCCCcCEEEEeccccCCccEEEEecCC-------CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEec
Q 001163          501 YI--FEGHESPVYSICPHHKENIQFIFSTATD-------GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGT  571 (1134)
Q Consensus       501 ~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~d-------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  571 (1134)
                      ..  +......-..+.+    ++.+++.|+.+       ..+.+||..+..-...-..........+...+++.++.++.
T Consensus        92 ~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~  167 (318)
T 2woz_A           92 GLPPLPSARCLFGLGEV----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGK  167 (318)
T ss_dssp             ECSCBSSCBCSCEEEEE----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCE
T ss_pred             ECCCCCccccccceEEE----CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCC
Confidence            31  1111111112221    23666777653       24677777654322221111111111122246677777664


Q ss_pred             CCC--CCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCceeEEEecCCCCCC
Q 001163          572 NKE--GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNVNLLASIDADGGLQA  644 (1134)
Q Consensus       572 ~~~--~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~  644 (1134)
                      +..  ....+.+||+.+.+....-.......-.+++. -++..++.|+.+     ..+.+||..+.+....-.....  .
T Consensus       168 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r  244 (318)
T 2woz_A          168 TDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE--R  244 (318)
T ss_dssp             ESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC--C
T ss_pred             CCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc--c
Confidence            221  12348999998876544322221111122222 256677777632     3577899887764433221111  1


Q ss_pred             cceEEEcCCCcEEEEEECC--------------CcEEEEEccCC
Q 001163          645 SPCIRFNKEGILLAVSTND--------------NGIKILANADG  674 (1134)
Q Consensus       645 v~~v~~sp~~~~l~~~~~d--------------g~i~iw~~~~~  674 (1134)
                      ....+..-++.+++.|+.+              ..+.+||+.+.
T Consensus       245 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  288 (318)
T 2woz_A          245 SSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK  288 (318)
T ss_dssp             BSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred             cceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence            1112222356777777653              35677777665

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.76  E-value=2  Score=45.37  Aligned_cols=174  Identities=12%  Similarity=0.097  Sum_probs=101.3

Q ss_pred             EEEcCCCCeEEEee-C--------------CeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEe--CC--CcE
Q 001163          849 FALSKNDSYVMSAS-G--------------GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGM--ED--SSI  909 (1134)
Q Consensus       849 v~~s~dg~~la~~s-d--------------g~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~--~d--g~i  909 (1134)
                      --++++|.+|+-.. .              ..|+..++...+......   ..  +..|++ ++++|+...  .+  ..|
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~---~~--~~~~s~-~g~~Iy~~~~~~~~~~~I  131 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP---DP--CIYASL-IGNYIYYLHYDTQTATSL  131 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC---SC--EEEEEE-ETTEEEEEEESSSSCEEE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec---CC--ccEEEE-eCCEEEEEeecCCCCceE
Confidence            45678898888775 2              247777777665333222   11  236777 666777665  33  455


Q ss_pred             EEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeC-CCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCC
Q 001163          910 QIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGA-DSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLD  988 (1134)
Q Consensus       910 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d  988 (1134)
                      +..++.. .....+..+..    .+|+++++.|+-.+. ..+|..-++.++...   .+  ..+.       ....++|+
T Consensus       132 y~~~~dG-s~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~---~l--~~~~-------~~~~~~P~  194 (302)
T 3s25_A          132 YRIRIDG-EEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA---LF--YDCN-------CYKPVVLD  194 (302)
T ss_dssp             EEEETTS-CCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE---EE--ECSC-------EEEEEEEE
T ss_pred             EEEECCC-CCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE---EE--eCCC-------ccceeeec
Confidence            5556553 33344443432    457888988886655 567888888775421   11  2221       12346799


Q ss_pred             CCEEEEEe-e--ceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEec--CCcEEEeecCCC
Q 001163          989 QTHLLAVH-E--TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFE--EGSVGVLTASTL 1052 (1134)
Q Consensus       989 g~~l~~~~-d--~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~--Dg~i~vwd~~~~ 1052 (1134)
                      +.+|+-+. +  ..|..-++.... ...+.    ...+  ..|+|+|++|+-++.  .+.|..-+++..
T Consensus       195 g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt----~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~  256 (302)
T 3s25_A          195 DTNVYYMDVNRDNAIVHVNINNPN-PVVLT----EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT  256 (302)
T ss_dssp             TTEEEEEEGGGTTEEEEECSSSCC-CEECS----CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCEEEEEEcCCCcEEEEEECCCCC-eEEEe----CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence            99998753 2  356666666444 33333    2233  348889999876533  356666666543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.75  E-value=0.12  Score=50.60  Aligned_cols=144  Identities=8%  Similarity=-0.041  Sum_probs=81.6

Q ss_pred             CCcEEEEEeCCCcEEEEEcccceE------EEeccCc--cCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCcccccee-
Q 001163          896 DNNIIAIGMEDSSIQIYNVRVDEV------KTKLKGH--QKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKF-  966 (1134)
Q Consensus       896 ~~~~la~g~~dg~i~iwd~~~~~~------~~~l~~h--~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-  966 (1134)
                      ...+|++..+| +++.=...++..      ..++ ++  =..+..++|+|+|.+.+.  .+|.+.-.+..+.......- 
T Consensus         3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s   78 (236)
T 1tl2_A            3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR   78 (236)
T ss_dssp             CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH
T ss_pred             cceEEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc
Confidence            34566666666 655544443321      1111 12  136779999999986666  67765555543322211110 


Q ss_pred             -eeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeec------cCCCccCEEEEEEccCCCEEEEEe
Q 001163          967 -LTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFV------PREASGPITHATYSCDSQSIYVAF 1039 (1134)
Q Consensus       967 -~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~------~~~h~~~v~~~~~s~dg~~l~s~s 1039 (1134)
                       ..+-....   ..-.++.|.|+|.+.++ .||.|+-++-.+...- .+.      ...--..+..|.|.|+|.+-+.. 
T Consensus        79 ~t~IG~~Gw---~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~-~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-  152 (236)
T 1tl2_A           79 AKKIGNGGW---NQFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTD-NWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-  152 (236)
T ss_dssp             CEEEECSCG---GGCSEEEECTTSCEEEE-ETTEEEEESCCCSTTC-CHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-
T ss_pred             ccEeccccc---ccceEEEECCCCCEEEe-CCCEEEEeCCCcCCCC-ceeccccEeccCCCCceEEEEECCCceEEEEe-
Confidence             11111111   12478999999998888 7799988876442221 111      01112578999999999987766 


Q ss_pred             cCCcEEEeecC
Q 001163         1040 EEGSVGVLTAS 1050 (1134)
Q Consensus      1040 ~Dg~i~vwd~~ 1050 (1134)
                       |+.+.-+.-.
T Consensus       153 -dg~lyr~~~P  162 (236)
T 1tl2_A          153 -GQQFYKALPP  162 (236)
T ss_dssp             -TTEEEEECCC
T ss_pred             -CCcEEecCCC
Confidence             7765444433

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.53  E-value=0.087  Score=51.49  Aligned_cols=146  Identities=12%  Similarity=0.045  Sum_probs=86.0

Q ss_pred             CCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEE------Eecc--CccCceEEEEEeeCCCEEEEEeCCCcEEEEEC
Q 001163          885 PAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVK------TKLK--GHQKRITGLAFSNTLNVLVSSGADSQLCVWST  956 (1134)
Q Consensus       885 ~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~------~~l~--~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~  956 (1134)
                      ..++.++|+| ++.+.++  .+|.++-.+..+++..      ..+-  +-.. -.++.|.++|.+.++  .||.|.-++-
T Consensus        41 ~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           41 SNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred             ccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCC
Confidence            3677999999 8887777  6776666555442110      1110  1111 478999999988887  5698888876


Q ss_pred             CCCcccccee--eeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccc-----eeeccCCCccCEEEEEEc
Q 001163          957 DGWEKQASKF--LTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECL-----KQFVPREASGPITHATYS 1029 (1134)
Q Consensus       957 ~~~~~~~~~~--~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~-----~~~~~~~h~~~v~~~~~s 1029 (1134)
                      .+.....+.-  ..+-.+.-   ..+..+.|.|+|.+.++. |+.++-....+....     ...........-+-+.|+
T Consensus       115 P~~~~~~Wl~~a~~vg~~gw---~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~  190 (236)
T 1tl2_A          115 PQSDTDNWIARATEVGSGGW---SGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFS  190 (236)
T ss_dssp             CCSTTCCHHHHSEEEECSSG---GGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEEC
T ss_pred             CcCCCCceeccccEeccCCC---CceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEEC
Confidence            4433222111  11111111   247899999999998888 888654444322211     111111223455567789


Q ss_pred             cCCCEEEEEecCC
Q 001163         1030 CDSQSIYVAFEEG 1042 (1134)
Q Consensus      1030 ~dg~~l~s~s~Dg 1042 (1134)
                      ++|.+.++.  ++
T Consensus       191 ~~G~l~~v~--~g  201 (236)
T 1tl2_A          191 SVGTLFGVQ--GG  201 (236)
T ss_dssp             TTSCEEEEE--TT
T ss_pred             CCCcEEEEe--CC
Confidence            998877665  66

>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1

Probab=95.35  E-value=0.012  Score=47.26  Aligned_cols=56  Identities=14%  Similarity=0.231  Sum_probs=45.3

Q ss_pred             hHHHHHHHHHHhhhcCHHHHHHHHHHhcCCCcc--HHHHHHHhhcccHHHHHHHHccc
Q 001163            5 SRELVFLILQFLDEEKFKETVHKLEQDSGFFFN--MRYFEDMVTNGEWDEVEKYLSGF   60 (1134)
Q Consensus         5 ~~e~~~li~q~L~~~g~~~s~~~l~~Esg~~~~--~~~~~~~i~~g~w~~~~~~l~~~   60 (1134)
                      ++|+.+-|++||..+||.+++.+|.+|.++..+  ...-.+.+++-.|..++++-+++
T Consensus        10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKKI   67 (88)
T 1uuj_A           10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKV   67 (88)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHHH
Confidence            578999999999999999999999999998875  22235667788888887765544

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.33  E-value=0.59  Score=52.36  Aligned_cols=101  Identities=16%  Similarity=0.092  Sum_probs=70.9

Q ss_pred             CCCeeEEEEcCCCCeEEEee--CCeEEEEEccCCe------E-------EEEecCCCCCeEEEEEcCCCCcEEEEEeCCC
Q 001163          843 EDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFK------T-------MTTFMPPPPAATFLAFHPQDNNIIAIGMEDS  907 (1134)
Q Consensus       843 ~~~v~~v~~s~dg~~la~~s--dg~i~lwd~~~~~------~-------~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg  907 (1134)
                      ......+.++|||+++++++  +.++.++|++...      .       ..+.. ..-...-.+|.+ +|....+-.-|.
T Consensus       322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidS  399 (638)
T 3sbq_A          322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDS  399 (638)
T ss_dssp             SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTT
T ss_pred             CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecc
Confidence            34556789999999999987  7889999987421      1       22222 234567889999 776666667899


Q ss_pred             cEEEEEcccc----------eEEEeccCccCceEEEEE------eeCCCEEEEEe
Q 001163          908 SIQIYNVRVD----------EVKTKLKGHQKRITGLAF------SNTLNVLVSSG  946 (1134)
Q Consensus       908 ~i~iwd~~~~----------~~~~~l~~h~~~V~~l~~------s~d~~~l~s~s  946 (1134)
                      .|.-|++...          ..+.++.-|-.+- .+.-      .+||++|++..
T Consensus       400 qvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpG-H~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          400 QVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPG-HLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             EEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEE-EEEETTTTSTTCCSCEEEEEE
T ss_pred             eEEEEeccHHHHHhcCccCCeeeeccccccCCc-ccccCCCccCCCCccEEEEec
Confidence            9999999764          4566666665432 2322      47899999874

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.90  E-value=0.44  Score=50.92  Aligned_cols=196  Identities=10%  Similarity=-0.011  Sum_probs=100.8

Q ss_pred             eEEEee-CCeEEEEEccCCeEEEEecCC-CCCeEEEEE--cCCCCcEEEEE-eCCCcEEEEEcccceEEEeccC----cc
Q 001163          857 YVMSAS-GGKISLFNMMTFKTMTTFMPP-PPAATFLAF--HPQDNNIIAIG-MEDSSIQIYNVRVDEVKTKLKG----HQ  927 (1134)
Q Consensus       857 ~la~~s-dg~i~lwd~~~~~~~~~~~~~-~~~v~~l~~--sp~~~~~la~g-~~dg~i~iwd~~~~~~~~~l~~----h~  927 (1134)
                      ++++++ ||.|.-+|..+|+.+.+++.. ..++....-  .+.++..++.. +.||.|..++..+|.....+..    ..
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~   91 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST   91 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence            455555 999999999999999998754 122221110  01133444444 6899999999888855433321    12


Q ss_pred             CceEE---EEE-----eeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEE---Ec--CCCCEEEE
Q 001163          928 KRITG---LAF-----SNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQ---FH--LDQTHLLA  994 (1134)
Q Consensus       928 ~~V~~---l~~-----s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~---fs--~dg~~l~~  994 (1134)
                      .++..   ..+     +..+..+++++.++.+...|+.+|+..-........+.... ....|..   +.  ..+..++.
T Consensus        92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~-~~e~~~~~~d~~~d~~~~~v~i  170 (339)
T 2be1_A           92 SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGS-QSVDCSPEEKIKLQECENMIVI  170 (339)
T ss_dssp             CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC---------------------CCEEEE
T ss_pred             cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccc-cccccccccccccccCCCeEEE
Confidence            22221   000     01455788999999999999999874321111111110000 0001111   10  12344555


Q ss_pred             -EeeceEEEEeCCCcccceeeccCCCcc-CE-----EEEEEccCCCEEEEEecCCcEEEeecCCCccee
Q 001163          995 -VHETQIAIYEAPKLECLKQFVPREASG-PI-----THATYSCDSQSIYVAFEEGSVGVLTASTLRLRC 1056 (1134)
Q Consensus       995 -~~d~~i~iwd~~~~~~~~~~~~~~h~~-~v-----~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~ 1056 (1134)
                       ..+..+.+.+ ++|+ +..+....... .+     .+..++.|+.+ +.++.||.|.-+|..+|+.+.
T Consensus       171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             ecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence             4677777777 4554 22211000000 00     00011245777 447889999999999998876

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=94.89  E-value=1.8  Score=47.04  Aligned_cols=147  Identities=8%  Similarity=-0.006  Sum_probs=67.7

Q ss_pred             CeEEEEECCCCceeE--EecCCCcCEEEEeccccCCccEEEEecC------CCcEEEEecCCCCceeeecC----CCCCe
Q 001163          487 RVIKVWDAVTGTKQY--IFEGHESPVYSICPHHKENIQFIFSTAT------DGKIKAWLYDNLGSRVDYDA----PGHSS  554 (1134)
Q Consensus       487 ~~i~iwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~----~~~~v  554 (1134)
                      ..+.++|..+.+-..  .+......-.+++..   ++.+++.|+.      ...+.+||++..........    .....
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~  244 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK---GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVA  244 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE---TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCB
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE---CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccc
Confidence            578899988775433  222111110122221   2356666654      23566777633332222211    11111


Q ss_pred             eEEEECcCCCEEEEEecCCCC------------------CeEEEEEeCCCCeeEE--EecCCCCCceEEEEEcCCCCEEE
Q 001163          555 TMMAYSADGARLFSCGTNKEG------------------ESYLVEWNESEGAVKR--TYHGLGKRSVGVVQFDTTKNRFL  614 (1134)
Q Consensus       555 ~~~~~s~~~~~l~~~~~~~~~------------------~~~i~~wd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~  614 (1134)
                      ...+...+++.++.++.+.++                  ...+.+||+.+.+...  .+..... ..  .++..+++.++
T Consensus       245 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~--~~~~~~~~i~v  321 (357)
T 2uvk_A          245 GGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRA-YG--VSLPWNNSLLI  321 (357)
T ss_dssp             SCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCB-SS--EEEEETTEEEE
T ss_pred             cceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcc-cc--eeEEeCCEEEE
Confidence            222333466777777643211                  1347889988765433  3332221 11  22334667788


Q ss_pred             EEeCCC------eEEEEEcCCCceeEEEecC
Q 001163          615 AAGDEF------MIKFWDMDNVNLLASIDAD  639 (1134)
Q Consensus       615 ~~~~dg------~i~iwd~~~~~~~~~~~~~  639 (1134)
                      .|+.++      .|.++++++++.+.....+
T Consensus       322 ~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~  352 (357)
T 2uvk_A          322 IGGETAGGKAVTDSVLITVKDNKVTVQNLEH  352 (357)
T ss_dssp             EEEECGGGCEEEEEEEEEC-CCSCEEEC---
T ss_pred             EeeeCCCCCEeeeEEEEEEcCcEeEeeeccc
Confidence            888442      4666788888877765543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.67  E-value=1.7  Score=54.67  Aligned_cols=259  Identities=8%  Similarity=0.090  Sum_probs=139.5

Q ss_pred             CcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeee
Q 001163          379 GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLE  458 (1134)
Q Consensus       379 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~  458 (1134)
                      ..|.|-|+.++..+.++++                      .--+.-.+|..+.+|.=. ..++.|+|+++.+.++.   
T Consensus        48 ~~vvIidl~~~~~~~rrpi----------------------~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks---  101 (1630)
T 1xi4_A           48 AQVVIIDMNDPSNPIRRPI----------------------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKA---  101 (1630)
T ss_pred             ceEEEEECCCCCCcccccc----------------------cchhhccCCCcceEEEec-CCeEEEeehHHhhhhcc---
Confidence            3688888887765443222                      222344567777666654 67899999998775552   


Q ss_pred             eecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCC-CceeEEecCC----CcCEEEEeccccCCccEEEEec-----
Q 001163          459 IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT-GTKQYIFEGH----ESPVYSICPHHKENIQFIFSTA-----  528 (1134)
Q Consensus       459 l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~h----~~~v~~~~~~~~~~~~~l~s~s-----  528 (1134)
                      .. ...+|..=.|-.+.. +.|||   +..|..|++.. ..+++.|..|    ...|..-.  .+++.++++..+     
T Consensus       102 ~~-~~e~VvfWkWis~~~-l~lVT---~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~--~d~~~kW~~l~gi~~~~  174 (1630)
T 1xi4_A          102 HT-MTDDVTFWKWISLNT-VALVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYR--TDAKQKWLLLTGISAQQ  174 (1630)
T ss_pred             cc-cCCCceEEEecCCCe-eEEEc---CCeEEEeccCCCCccHHHHhcchhcccCeeEEee--eCCCCCeEEEEeeccCC
Confidence            22 234576677765554 23444   35899999964 3455555544    23343333  344545554332     


Q ss_pred             --CCCcEEEEecCCCCceeeecCCCCCeeEEEEC--cC-CCEEEEEecCCCCCeEEEEEeCCCC---ee------EEEec
Q 001163          529 --TDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYS--AD-GARLFSCGTNKEGESYLVEWNESEG---AV------KRTYH  594 (1134)
Q Consensus       529 --~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s--~~-~~~l~~~~~~~~~~~~i~~wd~~~~---~~------~~~~~  594 (1134)
                        -.|.+.+|..+... ...+.+|......+...  +. ...++.+..... .+.+++.++...   ..      +..+-
T Consensus       175 ~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~-g~kLhi~Ei~~~~~~~~~f~kk~~~~~~  252 (1630)
T 1xi4_A          175 NRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA-GGKLHIIEVGTPPTGNQPFPKKAVDVFF  252 (1630)
T ss_pred             Ccccceeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCC-CceEEEEecCCCccCCCCCccccccccC
Confidence              34778888776432 22233333322222221  11 122222222111 245778777432   11      11111


Q ss_pred             CC--CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEcc
Q 001163          595 GL--GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA  672 (1134)
Q Consensus       595 ~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~  672 (1134)
                      ..  ......++..++....++..+.-|.|.++|+.++.++..-...  ..+|...+.+....-+++....|.|.-..+.
T Consensus       253 ~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris--~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~  330 (1630)
T 1xi4_A          253 PPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS--GETIFVTAPHEATAGIIGVNRKGQVLSVCVE  330 (1630)
T ss_pred             CcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcccc--CCceEEeccCCCCCceEEEcCCceEEEEEEc
Confidence            11  1123345777888888999999999999999999987665433  2244433334333334444466666555554


Q ss_pred             CC
Q 001163          673 DG  674 (1134)
Q Consensus       673 ~~  674 (1134)
                      ..
T Consensus       331 ~~  332 (1630)
T 1xi4_A          331 EE  332 (1630)
T ss_pred             cc
Confidence            43

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=93.88  E-value=7.4  Score=40.85  Aligned_cols=181  Identities=9%  Similarity=0.047  Sum_probs=99.1

Q ss_pred             EEEEcCCCCeEEEEEeCC-------------CcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc
Q 001163          361 SMDFHPVQQILLVVGTNM-------------GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS  427 (1134)
Q Consensus       361 ~v~fsp~g~~lla~gs~d-------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  427 (1134)
                      +--|+++|.+|..+...+             ..|+..+++.++...                    +..  ..  +..|+
T Consensus        57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~--~~--~~~~s  112 (302)
T 3s25_A           57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDP--DP--CIYAS  112 (302)
T ss_dssp             EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EEC--SC--EEEEE
T ss_pred             eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eec--CC--ccEEE
Confidence            345789999888776654             456777776654322                    111  11  23788


Q ss_pred             CCCCEEEEEe--C--CCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEe
Q 001163          428 PDGTLFGVAY--S--KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF  503 (1134)
Q Consensus       428 pd~~~las~s--~--dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  503 (1134)
                      +++++|+-..  .  +..|..-++.... ..   .+..+..    .+|+++++. +..+......|.+-++..+.....+
T Consensus       113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~---~lt~~~~----~~~~~~g~~-iy~t~~g~~~Iy~~~l~g~~~~~l~  183 (302)
T 3s25_A          113 LIGNYIYYLHYDTQTATSLYRIRIDGEE-KK---KIKNHYL----FTCNTSDRY-FYYNNPKNGQLYRYDTASQSEALFY  183 (302)
T ss_dssp             EETTEEEEEEESSSSCEEEEEEETTSCC-CE---EEESSCC----CCSEEETTE-EEEECTTTCCEEEEETTTTEEEEEE
T ss_pred             EeCCEEEEEeecCCCCceEEEEECCCCC-eE---EEeCCCc----eEeeEECCE-EEEEeCCCceEEEEECCCCCEEEEe
Confidence            8999998876  3  3445555665433 22   2433432    457888985 2334334678888887766544433


Q ss_pred             cCCCcCEEEEeccccCCccEEEEecCC--CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEE
Q 001163          504 EGHESPVYSICPHHKENIQFIFSTATD--GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE  581 (1134)
Q Consensus       504 ~~h~~~v~~~~~~~~~~~~~l~s~s~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~  581 (1134)
                      .+   ... ..++|.  +.+|+-...+  ..|..-+++..... .+.  ...+  ..++|++++|+.+....  ...|..
T Consensus       184 ~~---~~~-~~~~P~--g~~iy~t~~~~~~~I~~~~ldG~~~~-~Lt--~~~~--~~~~~~g~~Iy~~~~~~--~~~i~~  250 (302)
T 3s25_A          184 DC---NCY-KPVVLD--DTNVYYMDVNRDNAIVHVNINNPNPV-VLT--EANI--EHYNVYGSLIFYQRGGD--NPALCV  250 (302)
T ss_dssp             CS---CEE-EEEEEE--TTEEEEEEGGGTTEEEEECSSSCCCE-ECS--CSCE--EEEEEETTEEEEEECSS--SCEEEE
T ss_pred             CC---Ccc-ceeeec--CCEEEEEEcCCCcEEEEEECCCCCeE-EEe--CCCc--ceEEECCCEEEEEECCC--CcEEEE
Confidence            32   222 233333  3455444322  34555555543322 222  1223  34788999987764322  245777


Q ss_pred             EeCCCC
Q 001163          582 WNESEG  587 (1134)
Q Consensus       582 wd~~~~  587 (1134)
                      .++...
T Consensus       251 ~~~DG~  256 (302)
T 3s25_A          251 VKNDGT  256 (302)
T ss_dssp             EETTSC
T ss_pred             EECCCC
Confidence            776543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.38  E-value=7.5  Score=43.66  Aligned_cols=110  Identities=12%  Similarity=0.091  Sum_probs=64.1

Q ss_pred             CceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCC--CCCCCceEEEEcCC---CCEEEEE--e----
Q 001163          928 KRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRT--ASALADTRVQFHLD---QTHLLAV--H----  996 (1134)
Q Consensus       928 ~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~l~fs~d---g~~l~~~--~----  996 (1134)
                      ...++|+|.|+|+++++-...+.|++++..+++..  ....+.....  .....+..++|+||   +.+|.++  .    
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~--~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVK--TVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE--EEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe--EEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            34679999999998877554456888876554422  1222222110  11245779999996   5566553  2    


Q ss_pred             --------eceEEEEeCCCc-------ccce-eeccCCCccCEEEEEEccCCCEEEEEec
Q 001163          997 --------ETQIAIYEAPKL-------ECLK-QFVPREASGPITHATYSCDSQSIYVAFE 1040 (1134)
Q Consensus       997 --------d~~i~iwd~~~~-------~~~~-~~~~~~h~~~v~~~~~s~dg~~l~s~s~ 1040 (1134)
                              ...|.-|+...+       +.+. .+. .........|+|.|||.+.++.++
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p-~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP-SSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC-CCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCC-CCCCCCCCeEeECCCCeEEEEECC
Confidence                    235666665432       1111 121 111234789999999998777654

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=93.22  E-value=3.6  Score=42.85  Aligned_cols=222  Identities=11%  Similarity=0.050  Sum_probs=114.6

Q ss_pred             CeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEecc
Q 001163          845 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK  924 (1134)
Q Consensus       845 ~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~  924 (1134)
                      .|..++....-. ++.. ||.|+.|-....-.+.........|..++...  ...++. . ||.|+.|-....-.+..-.
T Consensus        25 ~i~~ia~G~~h~-~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P~   98 (282)
T 3qhy_B           25 GVDAIAGGYFHG-LALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVPA   98 (282)
T ss_dssp             SCCEEEECSSEE-EEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred             CCcEEEeCCCeE-EEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence            466666544322 3333 88888886543221111111234677777754  334444 5 8999999765321111111


Q ss_pred             CccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEe
Q 001163          925 GHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYE 1004 (1134)
Q Consensus       925 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd 1004 (1134)
                      .-...|..++...+.  .+.-. ||.|..|-....-...   +...     ....|..++...+..+ +.. |+.|+.|-
T Consensus        99 ~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg---~~~~-----~~~~i~~i~~G~~~~~-~l~-~G~v~~wG  165 (282)
T 3qhy_B           99 EARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTT---VPAE-----AQSGVTALDGGVYTAL-AVK-NGGVIAWG  165 (282)
T ss_dssp             GGSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTS---CCGG-----GGSSEEEEEECSSEEE-EEE-TTEEEEEE
T ss_pred             ccCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCC---CCcc-----CCCCeEEEEcccCEEE-EEE-CCEEEEec
Confidence            113467777776443  33334 9999999865532211   0000     0134666655544332 234 89999998


Q ss_pred             CCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCC
Q 001163         1005 APKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDP 1084 (1134)
Q Consensus      1005 ~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~ 1084 (1134)
                      ......+....  .-...|..++...+... +.  .||.|..|=....-.+.   .+.    .-...|..++.-    ..
T Consensus       166 ~n~~gqlg~p~--~~~~~v~~i~~G~~hs~-al--~~G~v~~wG~n~~gqlg---~p~----~~~~~v~~i~~G----~~  229 (282)
T 3qhy_B          166 DNYFGQTTVPA--EAQSGVDDVAGGIFHSL-AL--KDGKVIAWGDNRYKQTT---VPT----EALSGVSAIASG----EW  229 (282)
T ss_dssp             CCTTSTTSCCG--GGGSSEEEEEECSSEEE-EE--ETTEEEEEECCTTSTTC---CCG----GGGSSCCEEEEC----SS
T ss_pred             CCCCCCCCCce--ecCCCeEEEEecCCEEE-EE--ECCeEEEEECCCCCCCC---CCc----ccCCCceEEEcC----CC
Confidence            76544333221  11356777776544333 33  59999999765432221   111    111345555432    23


Q ss_pred             CEEEEEecCCcEEEEeCCC
Q 001163         1085 NQFALGLTDGGVYIIEPLE 1103 (1134)
Q Consensus      1085 ~~l~s~~~Dg~v~vW~~~~ 1103 (1134)
                      ..++..  ||.|+.|--..
T Consensus       230 h~~al~--~g~v~~wG~n~  246 (282)
T 3qhy_B          230 YSLALK--NGKVIAWGSSR  246 (282)
T ss_dssp             CEEEEE--TTEEEEESTTC
T ss_pred             EEEEEE--CCEEEEecCCC
Confidence            344444  99999996543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=92.21  E-value=18  Score=40.61  Aligned_cols=55  Identities=20%  Similarity=0.133  Sum_probs=35.4

Q ss_pred             CEEEEEEcCCCC-EEEEEeCCCEEEEEEccCCceeeeeeeee---------cCCCCEEEEEEecC
Q 001163          420 SVNRVMWSPDGT-LFGVAYSKHIVHLYTYHGGDELRNHLEIE---------AHVGSVNDLAFSYP  474 (1134)
Q Consensus       420 ~V~~l~~spd~~-~las~s~dg~v~iwd~~~~~~~~~~~~l~---------~h~~~V~~v~~s~~  474 (1134)
                      ..+.|+|.|||. .|+++...|.|++++.........+..+.         +.......|+|+|+
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~   79 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN   79 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence            567899999996 56666788999999754321111111111         12456889999996

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=92.20  E-value=5.8  Score=47.55  Aligned_cols=197  Identities=13%  Similarity=0.089  Sum_probs=105.3

Q ss_pred             CCCCeEEEee-C----CeEEEEEccCCeEEEEe-c-------CCCCCeEEEEEcCCCCcEEEEEeCCC------cEEEEE
Q 001163          853 KNDSYVMSAS-G----GKISLFNMMTFKTMTTF-M-------PPPPAATFLAFHPQDNNIIAIGMEDS------SIQIYN  913 (1134)
Q Consensus       853 ~dg~~la~~s-d----g~i~lwd~~~~~~~~~~-~-------~~~~~v~~l~~sp~~~~~la~g~~dg------~i~iwd  913 (1134)
                      .++.+++.|+ +    +.+.+||..+.+-...- .       .....-.++.+.. ++++++.|+.++      .+.+||
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd  474 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD  474 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence            5667777765 3    35889998776433222 1       1112234445543 567888887543      588899


Q ss_pred             cccceEEE--eccCccCceEEEEEeeCCCEEEEEeCCC--cEEEEECCCCccccceeeeecCCCCC-CCCCceEEEEcCC
Q 001163          914 VRVDEVKT--KLKGHQKRITGLAFSNTLNVLVSSGADS--QLCVWSTDGWEKQASKFLTIPNGRTA-SALADTRVQFHLD  988 (1134)
Q Consensus       914 ~~~~~~~~--~l~~h~~~V~~l~~s~d~~~l~s~s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~l~fs~d  988 (1134)
                      ..+.+-..  .+......- +++...++++++.||.++  .+.+||+.+..   +..+... +..+ ......++.+..+
T Consensus       475 ~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~---W~~~~~~-g~~p~~r~~~~a~v~~~~  549 (695)
T 2zwa_A          475 MKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEI---FKDVTPK-DEFFQNSLVSAGLEFDPV  549 (695)
T ss_dssp             TTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTE---EEECCCS-SGGGGSCCBSCEEEEETT
T ss_pred             CCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCc---eEEccCC-CCCCCcccceeEEEEeCC
Confidence            88754322  222111111 222224788888888765  68999988754   3222210 0000 0012344555655


Q ss_pred             -CCEEEEE-e--e-----ceEEEEeCCCccc-----ceeecc-CCCccCEEEEEEccCCCEEEEEecC--------CcEE
Q 001163          989 -QTHLLAV-H--E-----TQIAIYEAPKLEC-----LKQFVP-REASGPITHATYSCDSQSIYVAFEE--------GSVG 1045 (1134)
Q Consensus       989 -g~~l~~~-~--d-----~~i~iwd~~~~~~-----~~~~~~-~~h~~~v~~~~~s~dg~~l~s~s~D--------g~i~ 1045 (1134)
                       +++++.| .  +     ..+.+||..+...     ...+.. ......-.+++...++++++.|+.+        ..|.
T Consensus       550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~  629 (695)
T 2zwa_A          550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII  629 (695)
T ss_dssp             TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred             CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence             5555554 3  2     4589999988772     111110 0000011123333447888888743        4699


Q ss_pred             EeecCCCcce
Q 001163         1046 VLTASTLRLR 1055 (1134)
Q Consensus      1046 vwd~~~~~~~ 1055 (1134)
                      +||..+.+..
T Consensus       630 ~yd~~t~~W~  639 (695)
T 2zwa_A          630 SLDPLSETLT  639 (695)
T ss_dssp             EEETTTTEEE
T ss_pred             EEECCCCeEE
Confidence            9999988765

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=91.31  E-value=20  Score=39.32  Aligned_cols=259  Identities=12%  Similarity=0.037  Sum_probs=118.1

Q ss_pred             CCCeeEEEEcC--CCCeEEEeeCC----eEEEEEccCCeEEEEecC--------------CCCCeEEEEEcCCC-CcEEE
Q 001163          843 EDAVPCFALSK--NDSYVMSASGG----KISLFNMMTFKTMTTFMP--------------PPPAATFLAFHPQD-NNIIA  901 (1134)
Q Consensus       843 ~~~v~~v~~s~--dg~~la~~sdg----~i~lwd~~~~~~~~~~~~--------------~~~~v~~l~~sp~~-~~~la  901 (1134)
                      ...|.+|+++|  ++.+.+.+..|    .|...+ +.++.-..+..              ....|.++++.|.+ ...|.
T Consensus        54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~  132 (394)
T 3b7f_A           54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY  132 (394)
T ss_dssp             TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred             CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence            35689999998  66666665554    343332 22322222211              11247789998633 34555


Q ss_pred             EEeCCCcEEEEEcccce---EEEeccC----------------ccCceEEEEEeeC-CCEEEEEeCCCcEEEEECCCCcc
Q 001163          902 IGMEDSSIQIYNVRVDE---VKTKLKG----------------HQKRITGLAFSNT-LNVLVSSGADSQLCVWSTDGWEK  961 (1134)
Q Consensus       902 ~g~~dg~i~iwd~~~~~---~~~~l~~----------------h~~~V~~l~~s~d-~~~l~s~s~Dg~i~iwd~~~~~~  961 (1134)
                      +++..+.|...+ +.|+   .+..+..                ....|.+|.+.|. ...|+.+..++.|...+ +.++ 
T Consensus       133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~-  209 (394)
T 3b7f_A          133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGT-  209 (394)
T ss_dssp             EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTS-
T ss_pred             EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCC-
Confidence            555555554432 2222   2211111                1235788999873 34444454444444432 2222 


Q ss_pred             ccceeeeec-CC-CCC-----CCCCceEEEEcCC-CCEEEEEeeceEEEEeCCCcccceeecc-CCC--ccCEEEEEEcc
Q 001163          962 QASKFLTIP-NG-RTA-----SALADTRVQFHLD-QTHLLAVHETQIAIYEAPKLECLKQFVP-REA--SGPITHATYSC 1030 (1134)
Q Consensus       962 ~~~~~~~~~-~~-~~~-----~~~~v~~l~fs~d-g~~l~~~~d~~i~iwd~~~~~~~~~~~~-~~h--~~~v~~~~~s~ 1030 (1134)
                       .+..+... .. ..+     ....+.++++.|+ ...|.++..+.|...+- .++....+.. ...  ...+.++++.|
T Consensus       210 -tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p  287 (394)
T 3b7f_A          210 -DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQ  287 (394)
T ss_dssp             -SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEET-TTTEEECGGGGSCTTTCSCEEEEEECS
T ss_pred             -CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCC-CCCcceECCCCCCCCCccceEEEEECC
Confidence             11111110 00 000     0124788999886 35566655555555442 2332222221 011  13456788876


Q ss_pred             -CCCEEEEEec-----------CCcEEEeecCC-CcceeecCCCcccCCCCC-CCceeEEEEecCCCCCEEEEEecCCcE
Q 001163         1031 -DSQSIYVAFE-----------EGSVGVLTAST-LRLRCRINPTAYLPTNPS-LRVYPLVIAGNPTDPNQFALGLTDGGV 1096 (1134)
Q Consensus      1031 -dg~~l~s~s~-----------Dg~i~vwd~~~-~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~p~~~~~l~s~~~Dg~v 1096 (1134)
                       +...|..+..           ++...+|.... |+....+.  .-+|.... ..+...+++++|.++..|+.++.++.|
T Consensus       288 ~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l  365 (394)
T 3b7f_A          288 RDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--RGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI  365 (394)
T ss_dssp             SCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--BTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE
T ss_pred             CCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--CCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE
Confidence             3344444432           23334554433 33333332  11222110 111112346677666667777766654


Q ss_pred             EEEeCCCCCCCccCC
Q 001163         1097 YIIEPLEAEGRWGTS 1111 (1134)
Q Consensus      1097 ~vW~~~~~~~~~~~~ 1111 (1134)
                        |.-.+....|...
T Consensus       366 --~~S~D~G~tW~~~  378 (394)
T 3b7f_A          366 --WASADEGEHWQCI  378 (394)
T ss_dssp             --EEESSTTSBCEEE
T ss_pred             --EEECCCCCCceEc
Confidence              4444455567653

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=90.52  E-value=26  Score=39.28  Aligned_cols=54  Identities=11%  Similarity=0.089  Sum_probs=33.7

Q ss_pred             ceEEEEEcCCCC-EEEEEeCCCeEEEEEcCCC---ceeEEEec---C----CCCCCcceEEEcCC
Q 001163          600 SVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNV---NLLASIDA---D----GGLQASPCIRFNKE  653 (1134)
Q Consensus       600 ~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~---~~~~~~~~---~----~~~~~v~~v~~sp~  653 (1134)
                      ....++|.|++. .++++...|.|++++....   ..+..+..   .    ........|+|+|+
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~   79 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN   79 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence            456799999996 5666778899999975432   12232211   0    01234567888885

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=90.06  E-value=11  Score=45.26  Aligned_cols=196  Identities=14%  Similarity=0.036  Sum_probs=101.1

Q ss_pred             cCCCceEEEEEeCC----CeEEEEECCCCceeEEe-c-------CCCcCEEEEeccccCCccEEEEecCCC------cEE
Q 001163          473 YPNKQLSVVTCGED----RVIKVWDAVTGTKQYIF-E-------GHESPVYSICPHHKENIQFIFSTATDG------KIK  534 (1134)
Q Consensus       473 ~~~~~~~l~s~s~d----~~i~iwd~~~~~~~~~~-~-------~h~~~v~~~~~~~~~~~~~l~s~s~dg------~i~  534 (1134)
                      .++.  +++.||.+    ..+.++|..+++....- .       .....-..+.+  ..++.+++.|+.++      .+.
T Consensus       396 ~~~~--iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~--~~~~~lyv~GG~~~~~~~~~dv~  471 (695)
T 2zwa_A          396 AGND--VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTI--SRNNQLLLIGGRKAPHQGLSDNW  471 (695)
T ss_dssp             CSSC--EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEE--TTTTEEEEECCBSSTTCBCCCCE
T ss_pred             ECCE--EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEE--ccCCEEEEEcCCCCCCCccccEE
Confidence            3455  56666643    46788888877543322 1       11111112221  10446777776543      467


Q ss_pred             EEecCCCCceeeecCCCCC-eeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEec---CC-CCCceEEEEEcCC
Q 001163          535 AWLYDNLGSRVDYDAPGHS-STMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH---GL-GKRSVGVVQFDTT  609 (1134)
Q Consensus       535 vwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~---~~-~~~~v~~~~~~~~  609 (1134)
                      +||..+..-...-...... -.+++...+++.++.||.+...  .+.+||..+.+....-.   .. ......++.+..+
T Consensus       472 ~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~  549 (695)
T 2zwa_A          472 IFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV  549 (695)
T ss_dssp             EEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC--SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred             EEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC--CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence            7777654322211111111 1233333488888888876544  69999999876544321   00 1112233555555


Q ss_pred             -CCEEEEEeC--C-----CeEEEEEcCCCce-----eEEEecCCCCCCc-ceEEEcCCCcEEEEEEC--------CCcEE
Q 001163          610 -KNRFLAAGD--E-----FMIKFWDMDNVNL-----LASIDADGGLQAS-PCIRFNKEGILLAVSTN--------DNGIK  667 (1134)
Q Consensus       610 -~~~l~~~~~--d-----g~i~iwd~~~~~~-----~~~~~~~~~~~~v-~~v~~sp~~~~l~~~~~--------dg~i~  667 (1134)
                       +..++.||.  +     ..+.+||+.+...     ...+......... .+++...++.+++.|+.        ...+.
T Consensus       550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~  629 (695)
T 2zwa_A          550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII  629 (695)
T ss_dssp             TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred             CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence             556666664  2     4689999988872     2222210001111 12333333777777774        34588


Q ss_pred             EEEccCC
Q 001163          668 ILANADG  674 (1134)
Q Consensus       668 iw~~~~~  674 (1134)
                      +||+.+.
T Consensus       630 ~yd~~t~  636 (695)
T 2zwa_A          630 SLDPLSE  636 (695)
T ss_dssp             EEETTTT
T ss_pred             EEECCCC
Confidence            8888765

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=89.51  E-value=19  Score=37.29  Aligned_cols=184  Identities=11%  Similarity=0.039  Sum_probs=97.8

Q ss_pred             CeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEecc
Q 001163          845 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK  924 (1134)
Q Consensus       845 ~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~  924 (1134)
                      .|..++...+-..++  .||.|+.|-....-.+.........|..++...   ...+.-. ||.|+.|-....-.+....
T Consensus        64 ~i~~ia~G~~hs~~l--~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~  137 (282)
T 3qhy_B           64 GVDAIAAGNYHSLAL--KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA  137 (282)
T ss_dssp             CCCEEEECSSEEEEE--ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred             CEEEEEeCCCEEEEE--ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc
Confidence            456666554433333  378888886543221111111134688887764   3444445 9999999765421111111


Q ss_pred             CccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEe
Q 001163          925 GHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYE 1004 (1134)
Q Consensus       925 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd 1004 (1134)
                      .....|..++...+. .++ -. ||.|..|-........     .+..   ....+..++...+... +. .+|.|+.|-
T Consensus       138 ~~~~~i~~i~~G~~~-~~~-l~-~G~v~~wG~n~~gqlg-----~p~~---~~~~v~~i~~G~~hs~-al-~~G~v~~wG  204 (282)
T 3qhy_B          138 EAQSGVTALDGGVYT-ALA-VK-NGGVIAWGDNYFGQTT-----VPAE---AQSGVDDVAGGIFHSL-AL-KDGKVIAWG  204 (282)
T ss_dssp             GGGSSEEEEEECSSE-EEE-EE-TTEEEEEECCTTSTTS-----CCGG---GGSSEEEEEECSSEEE-EE-ETTEEEEEE
T ss_pred             cCCCCeEEEEcccCE-EEE-EE-CCEEEEecCCCCCCCC-----Ccee---cCCCeEEEEecCCEEE-EE-ECCeEEEEE
Confidence            123457777665333 233 33 7999999765432211     0000   0134666666555443 34 689999998


Q ss_pred             CCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCC
Q 001163         1005 APKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTL 1052 (1134)
Q Consensus      1005 ~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~ 1052 (1134)
                      ......+..-.  .-...|..++...+...+++   ||.|..|=....
T Consensus       205 ~n~~gqlg~p~--~~~~~v~~i~~G~~h~~al~---~g~v~~wG~n~~  247 (282)
T 3qhy_B          205 DNRYKQTTVPT--EALSGVSAIASGEWYSLALK---NGKVIAWGSSRT  247 (282)
T ss_dssp             CCTTSTTCCCG--GGGSSCCEEEECSSCEEEEE---TTEEEEESTTCC
T ss_pred             CCCCCCCCCCc--ccCCCceEEEcCCCEEEEEE---CCEEEEecCCCC
Confidence            76543332221  11345777776544433333   899999986554

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=87.99  E-value=50  Score=39.26  Aligned_cols=243  Identities=9%  Similarity=0.027  Sum_probs=122.6

Q ss_pred             EEE-EcCCCCeEEEEEeCCC----cEEEEecCCccceeeeceeeeeccccCccccccccccCC-----CCEEEEEEcCCC
Q 001163          361 SMD-FHPVQQILLVVGTNMG----DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT-----ASVNRVMWSPDG  430 (1134)
Q Consensus       361 ~v~-fsp~g~~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~V~~l~~spd~  430 (1134)
                      .+. ++|++++++++=|..|    .|+++|+.+++.+.. .|. .              ....     .....++|-.++
T Consensus       133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~-~--------------~~k~~~~~~~~~~~~~W~d~~  196 (711)
T 4hvt_A          133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFE-P--------------ITNSGKLLEGKFTYPTWINKD  196 (711)
T ss_dssp             EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSC-C--------------BCTTCCBCCEETCCEEEEETT
T ss_pred             ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccc-c--------------ccccccccccccceeeEECCC
Confidence            455 8899997766544443    799999999976531 110 0              0000     011234676433


Q ss_pred             CEEEEE----------eCCCEEEEEEccCCceeeeeeeeecCCCCE-EEEEEecCCCc---eEEEEEeCC---CeEEEEE
Q 001163          431 TLFGVA----------YSKHIVHLYTYHGGDELRNHLEIEAHVGSV-NDLAFSYPNKQ---LSVVTCGED---RVIKVWD  493 (1134)
Q Consensus       431 ~~las~----------s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V-~~v~~s~~~~~---~~l~s~s~d---~~i~iwd  493 (1134)
                      .++++.          +....|+.|.+-+...-. ...+.+....+ .....+++++.   ..+++.+.+   ..+.+.|
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  275 (711)
T 4hvt_A          197 TIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKA-KKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILD  275 (711)
T ss_dssp             EEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGC-EEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEE
T ss_pred             EEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHC-eEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEc
Confidence            333331          123468888887653211 11344433333 33455667663   135554422   4566667


Q ss_pred             CCC--CceeEEecCCCcCEEEEeccccCCccEEEEe----------cCCCcEEEEecCCCC-------ceee-ecC-CCC
Q 001163          494 AVT--GTKQYIFEGHESPVYSICPHHKENIQFIFST----------ATDGKIKAWLYDNLG-------SRVD-YDA-PGH  552 (1134)
Q Consensus       494 ~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----------s~dg~i~vwd~~~~~-------~~~~-~~~-~~~  552 (1134)
                      ...  ++...........+  +. +  .++.+++..          ...+.|...++....       .... +.. ...
T Consensus       276 ~~~~~~~~~~l~~~~~~~~--~~-~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (711)
T 4hvt_A          276 TKYKNLKLQKINMPSDATL--QG-S--FKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANE  350 (711)
T ss_dssp             CSSSSCEEEECCSCTTCEE--EE-E--ETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTE
T ss_pred             CCCCCCcceEeecCCcceE--ee-e--ECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCC
Confidence            553  43222222112111  11 1  122444422          145778888887631       1112 322 233


Q ss_pred             CeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCe-eEEE-ecCCCCCceEEEEEcCCCCEE-EEEe---CCCeEEEEE
Q 001163          553 SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA-VKRT-YHGLGKRSVGVVQFDTTKNRF-LAAG---DEFMIKFWD  626 (1134)
Q Consensus       553 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~l-~~~~---~dg~i~iwd  626 (1134)
                      .+..+.+..+ ..+++...  ++...+.++|+.++. .... +.......+......+++..+ ++.+   .-+.++.+|
T Consensus       351 ~l~~~~~~~~-~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d  427 (711)
T 4hvt_A          351 VFNFISTTKD-RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWV  427 (711)
T ss_dssp             EEEEEEECSS-CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred             eEEEEEEECC-EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEe
Confidence            6778888876 44444433  446678999987764 2222 322222256656666766544 4433   346788888


Q ss_pred             cC
Q 001163          627 MD  628 (1134)
Q Consensus       627 ~~  628 (1134)
                      ..
T Consensus       428 ~~  429 (711)
T 4hvt_A          428 KT  429 (711)
T ss_dssp             TT
T ss_pred             CC
Confidence            76

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=87.27  E-value=29  Score=35.67  Aligned_cols=194  Identities=9%  Similarity=0.085  Sum_probs=106.7

Q ss_pred             cEEEEEeCCCcEEE---EEcccceEEEeccCccCceEEEEEee--CCCEEEEEeCCCcEEEEECCCCc--cccceeeeec
Q 001163          898 NIIAIGMEDSSIQI---YNVRVDEVKTKLKGHQKRITGLAFSN--TLNVLVSSGADSQLCVWSTDGWE--KQASKFLTIP  970 (1134)
Q Consensus       898 ~~la~g~~dg~i~i---wd~~~~~~~~~l~~h~~~V~~l~~s~--d~~~l~s~s~Dg~i~iwd~~~~~--~~~~~~~~~~  970 (1134)
                      ..|+.-++.|.++-   |++..+.....+. ....|.++.. +  +..+++..+.+|.++-..+..-.  ......+...
T Consensus        36 ~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk  113 (276)
T 3no0_A           36 EGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT  113 (276)
T ss_dssp             SCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC
T ss_pred             CEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC
Confidence            34555566665554   3333322111133 3456766644 4  46799999999999999876532  1111122222


Q ss_pred             CCCCCCCCCceEEEEcCCC-CEEEEEeeceEEEEeCCCccc-------ceeeccCCCccCEEEEEEccCCCEEEEEecCC
Q 001163          971 NGRTASALADTRVQFHLDQ-THLLAVHETQIAIYEAPKLEC-------LKQFVPREASGPITHATYSCDSQSIYVAFEEG 1042 (1134)
Q Consensus       971 ~~~~~~~~~v~~l~fs~dg-~~l~~~~d~~i~iwd~~~~~~-------~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg 1042 (1134)
                      ++     +.+..+....+. ..++.+..|.+..+....-..       +..+.... ...|.++...+++.+|+..+..|
T Consensus       114 eg-----D~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G  187 (276)
T 3no0_A          114 EG-----DEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVITAKG  187 (276)
T ss_dssp             TT-----CCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEETTS
T ss_pred             CC-----CEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEeCCC
Confidence            22     345555544444 444457888887776542211       11122212 46677777667778899999999


Q ss_pred             cEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEEecCCcEEE--EeCCC
Q 001163         1043 SVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYI--IEPLE 1103 (1134)
Q Consensus      1043 ~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~Dg~v~v--W~~~~ 1103 (1134)
                      .++...+..-....+-....... .-.+.+..+.+.   ++.+.++..+.+|.+..  +++.+
T Consensus       188 ~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~---~~~~~i~~~t~~G~~ir~~~~~~~  246 (276)
T 3no0_A          188 RVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPI---KEEVELLITTKNGKAFYDKINQKD  246 (276)
T ss_dssp             CEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEE---SSEEEEEEEETTSCEEEEEEEGGG
T ss_pred             cEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEe---CCCCEEEEEcCCCeEEEeeeCHHH
Confidence            99988876544433321110000 112444444322   23457888888898887  77654

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=86.69  E-value=27  Score=41.55  Aligned_cols=243  Identities=11%  Similarity=0.072  Sum_probs=119.0

Q ss_pred             EEEE-EcCCCCEEEEE-eC----CCEEEEEEccCCceeeeeeeee-cCCC------CEEEEEEecCCCceEEEEEe----
Q 001163          422 NRVM-WSPDGTLFGVA-YS----KHIVHLYTYHGGDELRNHLEIE-AHVG------SVNDLAFSYPNKQLSVVTCG----  484 (1134)
Q Consensus       422 ~~l~-~spd~~~las~-s~----dg~v~iwd~~~~~~~~~~~~l~-~h~~------~V~~v~~s~~~~~~~l~s~s----  484 (1134)
                      ..+. ++||+++++.+ |.    ...++++|+.+++.+...  +. .-+.      ....++|..++.  ++++..    
T Consensus       132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~--~~~~~k~~~~~~~~~~~~~W~d~~~--~~~~~~~~~~  207 (711)
T 4hvt_A          132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNG--FEPITNSGKLLEGKFTYPTWINKDT--IIFNLVLHKN  207 (711)
T ss_dssp             EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTC--SCCBCTTCCBCCEETCCEEEEETTE--EEECCCCSTT
T ss_pred             eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCC--cccccccccccccccceeeEECCCE--EEEEeCCCCC
Confidence            3444 88999988775 22    236999999998765321  21 0000      124458874444  444321    


Q ss_pred             ------CCCeEEEEECCCCc--eeEEecCCCcCEE-EEeccccCCcc---EEEEecCC---CcEEEEecCCCCce-eeec
Q 001163          485 ------EDRVIKVWDAVTGT--KQYIFEGHESPVY-SICPHHKENIQ---FIFSTATD---GKIKAWLYDNLGSR-VDYD  548 (1134)
Q Consensus       485 ------~d~~i~iwd~~~~~--~~~~~~~h~~~v~-~~~~~~~~~~~---~l~s~s~d---g~i~vwd~~~~~~~-~~~~  548 (1134)
                            ....|+.|.+-+..  -...+.+....+. +...+.++...   .+++.+.+   ..+.+.+....... ..+.
T Consensus       208 ~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~  287 (711)
T 4hvt_A          208 EITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKIN  287 (711)
T ss_dssp             CBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECC
T ss_pred             CcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEee
Confidence                  22468888765542  2233444333332 22223333222   34444322   33555555432222 2332


Q ss_pred             CCCCCeeEEEECcCCCEEEEEecCC------CCCeEEEEEeCCCCe--------eEEEecCCCCCceEEEEEcCCCCEEE
Q 001163          549 APGHSSTMMAYSADGARLFSCGTNK------EGESYLVEWNESEGA--------VKRTYHGLGKRSVGVVQFDTTKNRFL  614 (1134)
Q Consensus       549 ~~~~~v~~~~~s~~~~~l~~~~~~~------~~~~~i~~wd~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~  614 (1134)
                      ....  ..+..+.++..++....+.      -....|...|+.++.        ....+.......+..+.+..+ ..++
T Consensus       288 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~  364 (711)
T 4hvt_A          288 MPSD--ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFL  364 (711)
T ss_dssp             SCTT--CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEE
T ss_pred             cCCc--ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEE
Confidence            2222  1223445565555332110      124458888876642        122244444446777888765 5666


Q ss_pred             EEeCCCe--EEEEEcCCCc-eeEE-EecCCCCCCcceEEEcCCCc-EEEEEEC---CCcEEEEEcc
Q 001163          615 AAGDEFM--IKFWDMDNVN-LLAS-IDADGGLQASPCIRFNKEGI-LLAVSTN---DNGIKILANA  672 (1134)
Q Consensus       615 ~~~~dg~--i~iwd~~~~~-~~~~-~~~~~~~~~v~~v~~sp~~~-~l~~~~~---dg~i~iw~~~  672 (1134)
                      +...++.  |+++++.+++ .... +.... ...+.....++++. ++++.+.   -+.+..++..
T Consensus       365 ~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~  429 (711)
T 4hvt_A          365 ATYDNVVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT  429 (711)
T ss_dssp             EEEETTEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             EEEECCEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence            6666664  6777776664 2333 33221 12455555666654 4444332   2556666654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=82.43  E-value=71  Score=36.11  Aligned_cols=235  Identities=12%  Similarity=0.107  Sum_probs=131.8

Q ss_pred             EEEEeCCCEEEEEEccCCceeeeeeeeecC----------------------CCCEE--EEEEe---cCCCceEEEEEe-
Q 001163          433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAH----------------------VGSVN--DLAFS---YPNKQLSVVTCG-  484 (1134)
Q Consensus       433 las~s~dg~v~iwd~~~~~~~~~~~~l~~h----------------------~~~V~--~v~~s---~~~~~~~l~s~s-  484 (1134)
                      +.||+..|.|+|+-+.+++.++.+..+..-                      .+...  .+.+.   .||+  +|+.-. 
T Consensus        73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGr--ylfiNdk  150 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGK--YLFINDK  150 (638)
T ss_dssp             EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEE--EEEEEET
T ss_pred             EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeE--EEEEecC
Confidence            557888999999999998877754332210                      01111  23332   2566  444444 


Q ss_pred             CCCeEEEEECCCCceeEEec-CCCcCEEEEeccccCCccEEEEecCC-------CcE---------EE---EecCCCCce
Q 001163          485 EDRVIKVWDAVTGTKQYIFE-GHESPVYSICPHHKENIQFIFSTATD-------GKI---------KA---WLYDNLGSR  544 (1134)
Q Consensus       485 ~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d-------g~i---------~v---wd~~~~~~~  544 (1134)
                      .+..|..-+++.-++-+.+. .....+.++++...++..+++.+++.       |..         .+   .|.++.+..
T Consensus       151 an~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~  230 (638)
T 3sbq_A          151 ANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMA  230 (638)
T ss_dssp             TTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEE
T ss_pred             CCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEE
Confidence            56678888888877765443 24556777777533455677776542       221         11   122222211


Q ss_pred             eeecCCCCCeeEEEECcCCCEEEEEecCCC-----------CCeEEEEEeCCC-------Ce-------eEEEecCCC--
Q 001163          545 VDYDAPGHSSTMMAYSADGARLFSCGTNKE-----------GESYLVEWNESE-------GA-------VKRTYHGLG--  597 (1134)
Q Consensus       545 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~-----------~~~~i~~wd~~~-------~~-------~~~~~~~~~--  597 (1134)
                      ..+.. .+....+...++|++.++.+.+.+           ....+.++|...       |+       -+..+.+..  
T Consensus       231 ~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~  309 (638)
T 3sbq_A          231 FQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKD  309 (638)
T ss_dssp             EEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBT
T ss_pred             EEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccc
Confidence            11111 112334556788888887763321           123344554320       00       011222211  


Q ss_pred             --C----------CceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCC------ce-------eEEEecCCCCCCcceEEEc
Q 001163          598 --K----------RSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNV------NL-------LASIDADGGLQASPCIRFN  651 (1134)
Q Consensus       598 --~----------~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~------~~-------~~~~~~~~~~~~v~~v~~s  651 (1134)
                        .          .....+.++|||+++++++ .+.++.++|+++.      +.       .....  -+. .....+|.
T Consensus       310 ~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e--~Gl-GPlHt~Fd  386 (638)
T 3sbq_A          310 GKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE--LGL-GPLHTTFD  386 (638)
T ss_dssp             TBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--CCS-CEEEEEEC
T ss_pred             ccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--CCC-cccEEEEC
Confidence              0          1334578999999999988 7889999998742      11       11222  112 34678999


Q ss_pred             CCCcEEEEEECCCcEEEEEccC
Q 001163          652 KEGILLAVSTNDNGIKILANAD  673 (1134)
Q Consensus       652 p~~~~l~~~~~dg~i~iw~~~~  673 (1134)
                      ++|....+.--|..|.-|++..
T Consensus       387 ~~G~aYTtlfidSqvvkWni~~  408 (638)
T 3sbq_A          387 GRGNAYTTLFIDSQVVKWNMEE  408 (638)
T ss_dssp             SSSEEEEEETTTTEEEEEEHHH
T ss_pred             CCCceEeeeeecceEEEEeccH
Confidence            9996666666899999999865

>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1

Probab=81.89  E-value=2.8  Score=38.83  Aligned_cols=64  Identities=19%  Similarity=0.289  Sum_probs=46.2

Q ss_pred             ccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccccccc
Q 001163           67 RYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLENFRDNEQLS  131 (1134)
Q Consensus        67 ~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~  131 (1134)
                      ++.+ ++|.|+-+.||||+..|..++|..|+++--.-+.....+.+++|..+.......+++...
T Consensus        48 EL~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~  111 (156)
T 2nxp_A           48 ELSQ-LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETML  111 (156)
T ss_dssp             HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGG
T ss_pred             HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHH
Confidence            3444 999999999999999999999999998533333333457778887776655555444433

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=81.01  E-value=65  Score=34.69  Aligned_cols=185  Identities=10%  Similarity=0.069  Sum_probs=99.0

Q ss_pred             EEEEEEccCC--ceeeeeeeeec----CCCCEEEEEEe---cC---CCceEEEEEeCCCeEEEEECCCCceeEEecCCCc
Q 001163          441 IVHLYTYHGG--DELRNHLEIEA----HVGSVNDLAFS---YP---NKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES  508 (1134)
Q Consensus       441 ~v~iwd~~~~--~~~~~~~~l~~----h~~~V~~v~~s---~~---~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~  508 (1134)
                      .|.+||+.++  +.++.. .+..    ....+..+++.   ++   +.....++=+...-|.|+|+.+++.-+.+  |. 
T Consensus       124 kLv~~DL~t~~~~li~~y-~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~--~~-  199 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRY-YFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVT--HP-  199 (381)
T ss_dssp             EEEEEESSSTTCCEEEEE-ECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEE--CG-
T ss_pred             eEEEEECCCCCceeEEEE-ECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEc--cC-
Confidence            5788888888  766543 2321    23457888887   22   13324555556789999999999877655  32 


Q ss_pred             CEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcC----CCEEEEEecCCCCCeEEEEEeC
Q 001163          509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSAD----GARLFSCGTNKEGESYLVEWNE  584 (1134)
Q Consensus       509 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~~~~~~~~i~~wd~  584 (1134)
                           .+.++..+ .+..   +|.-..|              ...+..++++|+    ++.|......+     -++|.+
T Consensus       200 -----~~~pd~~~-~~~i---~G~~~~~--------------~~Gi~gIaLsp~~~~~~~~LYf~plss-----~~ly~V  251 (381)
T 3q6k_A          200 -----TFKAERPT-KFDY---GGKEYEF--------------KAGIFGITLGDRDSEGNRPAYYLAGSA-----IKVYSV  251 (381)
T ss_dssp             -----GGSCCSCE-EEEE---TTEEEEE--------------CCCEEEEEECCCCTTSCCEEEEEESSC-----SEEEEE
T ss_pred             -----CCccccCc-ceEE---CCEEeEe--------------ccCceEEEecCCcCCCCeEEEEEECCC-----CcEEEE
Confidence                 12333211 1111   2222222              235788999998    78887776543     223322


Q ss_pred             C-----CC---eeEEEecCCCC--CceEEEEEc-CCCCEEEEEeCCCeEEEEEcCC-C---ceeEEEecCCCCCCcceEE
Q 001163          585 S-----EG---AVKRTYHGLGK--RSVGVVQFD-TTKNRFLAAGDEFMIKFWDMDN-V---NLLASIDADGGLQASPCIR  649 (1134)
Q Consensus       585 ~-----~~---~~~~~~~~~~~--~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~-~---~~~~~~~~~~~~~~v~~v~  649 (1134)
                      .     ..   ..++.+ +...  ..-...++. .+|..+++--+...|..|+..+ .   +....+...........+.
T Consensus       252 ~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~  330 (381)
T 3q6k_A          252 NTKELKQKGGKLNPELL-GNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDIS  330 (381)
T ss_dssp             EHHHHSSTTCCCCCEEE-EECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEE
T ss_pred             EHHHhhCcchhhceEEe-eecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEE
Confidence            2     11   112211 1111  123345665 5565566666889999999875 1   2223333222233445565


Q ss_pred             EcCCCcEEE
Q 001163          650 FNKEGILLA  658 (1134)
Q Consensus       650 ~sp~~~~l~  658 (1134)
                      +.++|.+.+
T Consensus       331 i~~~g~Lwv  339 (381)
T 3q6k_A          331 VDSKGGLWF  339 (381)
T ss_dssp             ECTTSCEEE
T ss_pred             ECCCCeEEE
Confidence            555554333

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=80.82  E-value=66  Score=34.64  Aligned_cols=156  Identities=10%  Similarity=0.093  Sum_probs=88.6

Q ss_pred             CeEEEEEccCC--eEEEEecCC------CCCeEEEEEc---CC--C-CcEEEEEe-CCCcEEEEEcccceEEEeccCccC
Q 001163          864 GKISLFNMMTF--KTMTTFMPP------PPAATFLAFH---PQ--D-NNIIAIGM-EDSSIQIYNVRVDEVKTKLKGHQK  928 (1134)
Q Consensus       864 g~i~lwd~~~~--~~~~~~~~~------~~~v~~l~~s---p~--~-~~~la~g~-~dg~i~iwd~~~~~~~~~l~~h~~  928 (1134)
                      -+|.+||+.+.  +.++++.-.      ......+++.   |.  + +.++.... ..+.|.|+|+.+++.-+.+  |..
T Consensus       123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~--~~~  200 (381)
T 3q6k_A          123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVT--HPT  200 (381)
T ss_dssp             CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEE--CGG
T ss_pred             ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEc--cCC
Confidence            35678888888  888776532      2347778877   21  1 33444443 4678999999998876655  321


Q ss_pred             ceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCC----CCEEEEEeeceEEEEe
Q 001163          929 RITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLD----QTHLLAVHETQIAIYE 1004 (1134)
Q Consensus       929 ~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d----g~~l~~~~d~~i~iwd 1004 (1134)
                            |.|+.....+.  +|.-.-|               .       .++..+++||+    ++.|.-+.=..-++|.
T Consensus       201 ------~~pd~~~~~~i--~G~~~~~---------------~-------~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~  250 (381)
T 3q6k_A          201 ------FKAERPTKFDY--GGKEYEF---------------K-------AGIFGITLGDRDSEGNRPAYYLAGSAIKVYS  250 (381)
T ss_dssp             ------GSCCSCEEEEE--TTEEEEE---------------C-------CCEEEEEECCCCTTSCCEEEEEESSCSEEEE
T ss_pred             ------CccccCcceEE--CCEEeEe---------------c-------cCceEEEecCCcCCCCeEEEEEECCCCcEEE
Confidence                  33441111111  2221111               1       34788999998    7888775333334444


Q ss_pred             CCCc-----c---cceeeccCCCccCEEEEEEc-cCCCEEEEEecCCcEEEeecCC
Q 001163         1005 APKL-----E---CLKQFVPREASGPITHATYS-CDSQSIYVAFEEGSVGVLTAST 1051 (1134)
Q Consensus      1005 ~~~~-----~---~~~~~~~~~h~~~v~~~~~s-~dg~~l~s~s~Dg~i~vwd~~~ 1051 (1134)
                      +.+.     .   .+..+-..+-...-..+++. .+|.++++--..+.|..|+..+
T Consensus       251 V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~  306 (381)
T 3q6k_A          251 VNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK  306 (381)
T ss_dssp             EEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred             EEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence            4321     1   11111111111333456675 6788788888889999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1134
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-17
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-15
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-11
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-17
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-16
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-11
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.001
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-16
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-15
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-13
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-10
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	0.003
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-13
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-11
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-11
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-11
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.004
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	9e-11
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.001
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.002
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-10
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	9e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	9e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.002
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	9e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.004
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.004
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	8e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.002
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	8e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	9e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.001
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.001
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	9e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	4e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.002
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	6e-04
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	0.003

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.5 bits (202), Expect = 4e-17
 Identities = 48/345 (13%), Positives = 100/345 (28%), Gaps = 28/345 (8%)

Query: 342 TDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWE 401
             ++   +  +L+  S V  + F    +  L  G N     ++ V     +A  S     
Sbjct: 48  PREIDVELHKSLDHTSVVCCVKFSNDGE-YLATGCN-KTTQVYRVSDGSLVARLSDDSAA 105

Query: 402 LGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEA 461
                  L  S S      +  V +SPDG          ++ ++       +        
Sbjct: 106 NKDPE-NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL----- 159

Query: 462 HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENI 521
                +  +  Y      +V+   DR +++WD  TG         +              
Sbjct: 160 QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK- 218

Query: 522 QFIFSTATDGKIKAWLYDNLGSRVDYDAP-----GHSS--TMMAYSADGARLFSCGTNK- 573
            +I + + D  ++ W  +        D+      GH      + ++ DG  + S   ++ 
Sbjct: 219 -YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 277

Query: 574 ------EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDM 627
                 +  +   +            +   K  V  V         L+   +  + FWD 
Sbjct: 278 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK 337

Query: 628 DNVNLLASIDADGG----LQASPCIRFNKEGILLAVSTNDNGIKI 668
            + N L  +         +  +       E  + A  + D   +I
Sbjct: 338 KSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.5 bits (189), Expect = 2e-15
 Identities = 25/188 (13%), Positives = 63/188 (33%), Gaps = 27/188 (14%)

Query: 362 MDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASV 421
           +   P     +  G+    V +W+  +   +              +  +    + +  SV
Sbjct: 210 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLV------------ERLDSENESGTGHKDSV 257

Query: 422 NRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHV---------GSVNDLAFS 472
             V+++ DG           V L+     +   +     +             V  +A +
Sbjct: 258 YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT 317

Query: 473 YPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENI----QFIFSTA 528
             ++ +  ++  +DR +  WD  +G    + +GH + V S+   +  ++        + +
Sbjct: 318 QNDEYI--LSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 375

Query: 529 TDGKIKAW 536
            D K + W
Sbjct: 376 GDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.4 bits (155), Expect = 3e-11
 Identities = 24/143 (16%), Positives = 52/143 (36%), Gaps = 20/143 (13%)

Query: 832 LMTNDISDTNPEDAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMTTFMPPPPAA--- 887
           L + + S T  +D+V     +++   V+S S    + L+N+      +    P       
Sbjct: 243 LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV 302

Query: 888 ---------TFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNT 938
                      +A    ++  I  G +D  +  ++ +       L+GH+  +  +A +N 
Sbjct: 303 TYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG 361

Query: 939 L------NVLVSSGADSQLCVWS 955
                  NV  +   D +  +W 
Sbjct: 362 SSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.0 bits (141), Expect = 1e-09
 Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 17/162 (10%)

Query: 337 QSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKS 396
           ++ +  + L            +V S+ F    Q  +V G+    V LW + +    +   
Sbjct: 235 ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSK 293

Query: 397 FKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNH 456
                    +          +   V  V  + +            V  +    G+ L   
Sbjct: 294 TPNSGTCEVTY-------IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL-- 344

Query: 457 LEIEAHVGSVNDLAFSY-----PNKQLSVVTCGEDRVIKVWD 493
             ++ H  SV  +A +      P   +   T   D   ++W 
Sbjct: 345 -MLQGHRNSVISVAVANGSSLGPEYNV-FATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 2e-07
 Identities = 20/194 (10%), Positives = 57/194 (29%), Gaps = 20/194 (10%)

Query: 869  FNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNV-------RVDEVKT 921
               +     +  +      T +A  P D   IA G  D ++++++        R+D    
Sbjct: 189  IWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE 248

Query: 922  KLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALAD- 980
               GH+  +  + F+     +VS   D  + +W+      ++            + +   
Sbjct: 249  SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK 308

Query: 981  ---TRVQFHLDQTHLLAVHET-QIAIYEAPKLECLKQFVPREASGPITH------ATYSC 1030
                 V    +  ++L+  +   +  ++      L     +     +        ++   
Sbjct: 309  DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML--QGHRNSVISVAVANGSSLGP 366

Query: 1031 DSQSIYVAFEEGSV 1044
            +         +   
Sbjct: 367  EYNVFATGSGDCKA 380

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.7 bits (200), Expect = 4e-17
 Identities = 25/141 (17%), Positives = 55/141 (39%), Gaps = 12/141 (8%)

Query: 398 KVWEL--GACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRN 455
           K+W++  G C           + + +N + + P+G  F          L+      EL  
Sbjct: 209 KLWDVREGMCRQTFT-----GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263

Query: 456 HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICP 515
           +   +  +  +  ++FS   + L  +   +D    VWDA+   +  +  GH++ V  +  
Sbjct: 264 Y-SHDNIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV 320

Query: 516 HHKENIQFIFSTATDGKIKAW 536
               +   + + + D  +K W
Sbjct: 321 TD--DGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.2 bits (196), Expect = 2e-16
 Identities = 24/163 (14%), Positives = 55/163 (33%), Gaps = 9/163 (5%)

Query: 796 SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKND 855
           +  V  L   P      +G    + + +LW    G+      + T  E  +       N 
Sbjct: 184 TGDVMSLSLAPDTRLFVSGAC--DASAKLWDVREGMCRQ---TFTGHESDINAICFFPNG 238

Query: 856 SYVMSASGG---KISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIY 912
           +   + S     ++            +        T ++F      ++  G +D +  ++
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVW 297

Query: 913 NVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 955
           +    +    L GH  R++ L  ++    + +   DS L +W+
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.5 bits (189), Expect = 1e-15
 Identities = 43/322 (13%), Positives = 97/322 (30%), Gaps = 37/322 (11%)

Query: 333 QSLGQSSYSTDDLPKT---VVMTLNQG--SAVKSMDFHPVQQILLVVGTNMGDVMLWEVG 387
            +L Q + + D + +       TL +G  + + +M +    + LLV  +  G +++W+  
Sbjct: 28  ATLSQITNNIDPVGRIQMRTRRTL-RGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSY 85

Query: 388 SRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLY-- 445
           +  ++     +   +  C+     +  +         +++       V  S+ +      
Sbjct: 86  TTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGY 145

Query: 446 -------------------TYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED 486
                              T    D             + + ++ S        V+   D
Sbjct: 146 LSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205

Query: 487 RVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD 546
              K+WD   G  +  F GHES + +IC     N     + + D   + +        + 
Sbjct: 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGN--AFATGSDDATCRLFDLRADQELMT 263

Query: 547 YDAPGHSS--TMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVV 604
           Y         T +++S  G  L +   +         W+  +        G     V  +
Sbjct: 264 YSHDNIICGITSVSFSKSGRLLLAGYDDFN----CNVWDALKADRAGVLAG-HDNRVSCL 318

Query: 605 QFDTTKNRFLAAGDEFMIKFWD 626
                         +  +K W+
Sbjct: 319 GVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.9 bits (159), Expect = 7e-12
 Identities = 21/154 (13%), Positives = 50/154 (32%), Gaps = 9/154 (5%)

Query: 892  FHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQL 951
                D  +   G  D+S ++++VR    +    GH+  I  + F    N   +   D+  
Sbjct: 191  SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250

Query: 952  CVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHET-QIAIYEAPKLEC 1010
             ++     ++  +                T V F      LLA ++     +++A K + 
Sbjct: 251  RLFDLRADQELMTYSHDNIICGI------TSVSFSKSGRLLLAGYDDFNCNVWDALKADR 304

Query: 1011 LKQFVPREASGPITHATYSCDSQSIYVAFEEGSV 1044
                        ++    + D  ++     +  +
Sbjct: 305  AGVL--AGHDNRVSCLGVTDDGMAVATGSWDSFL 336

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.8 bits (156), Expect = 2e-11
 Identities = 43/316 (13%), Positives = 89/316 (28%), Gaps = 54/316 (17%)

Query: 396 SFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRN 455
           +  +  +G   M  + +L   + A +  + W  D  L   A     + ++  +  +++  
Sbjct: 34  TNNIDPVGRIQMRTRRTLRG-HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH- 91

Query: 456 HLEIEAHVGSVNDLAFSYPNKQLSVVT--------------------------------- 482
              I      V   A++     ++                                    
Sbjct: 92  --AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149

Query: 483 ----------CGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGK 532
                        D    +WD  TG +   F GH   V S+       +    S A D  
Sbjct: 150 RFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF--VSGACDAS 207

Query: 533 IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRT 592
            K W       R  +         + +  +G    +   +    +  +    ++  +   
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA---TCRLFDLRADQELMTY 264

Query: 593 YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK 652
            H      +  V F  +    LA  D+F    WD    +    +          C+    
Sbjct: 265 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTD 322

Query: 653 EGILLAVSTNDNGIKI 668
           +G+ +A  + D+ +KI
Sbjct: 323 DGMAVATGSWDSFLKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.1 bits (92), Expect = 0.001
 Identities = 29/300 (9%), Positives = 79/300 (26%), Gaps = 16/300 (5%)

Query: 807  RNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASG-GK 865
            R+ R +   AT +Q      P   I M    +       +       +   ++SAS  GK
Sbjct: 19   RDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGK 78

Query: 866  ISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKG 925
            + +++  T   +             A+ P  N +           I ++   + +     
Sbjct: 79   LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV----ACGGLDNICSIYNLKTREGNVR 134

Query: 926  HQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQF 985
              + + G     +    +           +T       +   T         +    +  
Sbjct: 135  VSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP 194

Query: 986  HLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVG 1045
               +  +    +    +++  +  C + F        I    +  +  +     ++ +  
Sbjct: 195  D-TRLFVSGACDASAKLWDVREGMCRQTF--TGHESDINAICFFPNGNAFATGSDDATCR 251

Query: 1046 VLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALGLTDGGVYIIEPLEAE 1105
            +      +     +    +    S+                   G  D    + + L+A+
Sbjct: 252  LFDLRADQELMTYSHDNIICGITSVSFSK--------SGRLLLAGYDDFNCNVWDALKAD 303

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.2 bits (196), Expect = 1e-16
 Identities = 32/188 (17%), Positives = 58/188 (30%), Gaps = 8/188 (4%)

Query: 350 VMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAV-KSFKVWELGACSMP 408
           V T         M        L+   +N   V +W V ++E  A  +  +         P
Sbjct: 136 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP 195

Query: 409 LQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVND 468
             +  S               G           + ++    G  L     +  H   V  
Sbjct: 196 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM---TLVGHDNWVRG 252

Query: 469 LAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA 528
           + F    K +  ++C +D+ ++VWD            HE  V S+  H      ++ + +
Sbjct: 253 VLFHSGGKFI--LSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP--YVVTGS 308

Query: 529 TDGKIKAW 536
            D  +K W
Sbjct: 309 VDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.2 bits (183), Expect = 6e-15
 Identities = 40/309 (12%), Positives = 104/309 (33%), Gaps = 15/309 (4%)

Query: 647 CIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFG 706
            + F+    ++  ++ D  IK+  + +     RT++  T     V   +   +  +    
Sbjct: 22  RVIFHPVFSVMVSASEDATIKVW-DYETGDFERTLKGHT---DSVQDISFDHSGKLLASC 77

Query: 707 SANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCR 766
           SA+  +     +       M G  ++  + + +       +  + +  K+ E+      +
Sbjct: 78  SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK 137

Query: 767 SLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQ 826
           +         M          G  I + +++   ++W     E  +  +   +    +  
Sbjct: 138 TFTGHREWVRMVR----PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECIS- 192

Query: 827 PPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMTTFMPPPP 885
                   +  S  +           K   +++S S    I ++++ T   + T +    
Sbjct: 193 ----WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 248

Query: 886 AATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSS 945
               + FH      I    +D ++++++ +       L  H+  +T L F  T   +V+ 
Sbjct: 249 WVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTG 307

Query: 946 GADSQLCVW 954
             D  + VW
Sbjct: 308 SVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.4 bits (181), Expect = 1e-14
 Identities = 40/216 (18%), Positives = 76/216 (35%), Gaps = 11/216 (5%)

Query: 459 IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHK 518
           +  H   V  + F  P   + +V+  ED  IKVWD  TG  +   +GH   V  I   H 
Sbjct: 13  LSGHRSPVTRVIFH-PVFSV-MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70

Query: 519 ENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESY 578
             +    S   D  IK W +             H+ + ++   +G  + S   +K  + +
Sbjct: 71  GKLLASCS--ADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 128

Query: 579 LVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA 638
            V+         +T+ G  +  V +V+ +       +  ++  ++ W +      A +  
Sbjct: 129 EVQTGY----CVKTFTG-HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE 183

Query: 639 DGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674
                   CI +  E    ++S         +   G
Sbjct: 184 HRH--VVECISWAPESSYSSISEATGSETKKSGKPG 217

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.8 bits (169), Expect = 3e-13
 Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 23/167 (13%)

Query: 425 MWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVV--- 481
             + DGTL     +   V ++     +      E+  H   V  ++++  +   S+    
Sbjct: 150 RPNQDGTLIASCSNDQTVRVWVVATKECKA---ELREHRHVVECISWAPESSYSSISEAT 206

Query: 482 ---------------TCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFS 526
                          +   D+ IK+WD  TG       GH++ V  +  H      FI S
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK--FILS 264

Query: 527 TATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 573
            A D  ++ W Y N       +A  H  T + +      + +   ++
Sbjct: 265 CADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ 311

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.7 bits (148), Expect = 1e-10
 Identities = 48/300 (16%), Positives = 102/300 (34%), Gaps = 26/300 (8%)

Query: 408 PLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVN 467
           P + +LS  + + V RV++ P  ++   A     + ++ Y  GD  R    ++ H  SV 
Sbjct: 8   PEKYALSG-HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQ 63

Query: 468 DLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFST 527
           D++F +  K L+  +      +  +      +      H     SI P+       I S 
Sbjct: 64  DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG----DHIVSA 119

Query: 528 ATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 587
           + D  IK W          +        M+  + DG  + SC  ++    ++V   E + 
Sbjct: 120 SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA 179

Query: 588 AVK---------------RTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL 632
            ++                             +        L+   +  IK WD+     
Sbjct: 180 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC 239

Query: 633 LASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVA 692
           L ++   G       + F+  G  +    +D  +++  +    R ++T+ +     + + 
Sbjct: 240 LMTL--VGHDNWVRGVLFHSGGKFILSCADDKTLRVW-DYKNKRCMKTLNAHEHFVTSLD 296

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.4 bits (137), Expect = 3e-09
 Identities = 23/172 (13%), Positives = 54/172 (31%), Gaps = 28/172 (16%)

Query: 843 EDAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQ------ 895
            + V     +++ + + S S    + ++ + T +              +++ P+      
Sbjct: 143 REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSI 202

Query: 896 -------------DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVL 942
                            +  G  D +I++++V        L GH   + G+ F +    +
Sbjct: 203 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFI 262

Query: 943 VSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA 994
           +S   D  L VW         +  L             T + FH    +++ 
Sbjct: 263 LSCADDKTLRVWDYKNKRCMKT--LNAHEHFV------TSLDFHKTAPYVVT 306

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.3 bits (134), Expect = 8e-09
 Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 5/79 (6%)

Query: 415 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP 474
             +   V  V++   G           + ++ Y     ++    + AH   V  L F   
Sbjct: 244 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK---TLNAHEHFVTSLDFH-K 299

Query: 475 NKQLSVVTCGEDRVIKVWD 493
                VVT   D+ +KVW+
Sbjct: 300 TAPY-VVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.9 bits (107), Expect = 2e-05
 Identities = 36/179 (20%), Positives = 70/179 (39%), Gaps = 10/179 (5%)

Query: 490 KVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA 549
           K W      ++Y   GH SPV  +  H   +   + S + D  IK W Y+      +   
Sbjct: 1   KEWI-PRPPEKYALSGHRSPVTRVIFHPVFS--VMVSASEDATIKVWDYET--GDFERTL 55

Query: 550 PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTT 609
            GH+ ++   S D +       + +    L ++   E       H     +V  V     
Sbjct: 56  KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGH---DHNVSSVSIMPN 112

Query: 610 KNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKI 668
            +  ++A  +  IK W++     + +    G  +    +R N++G L+A  +ND  +++
Sbjct: 113 GDHIVSASRDKTIKMWEVQTGYCVKTF--TGHREWVRMVRPNQDGTLIASCSNDQTVRV 169

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.5 bits (106), Expect = 2e-05
 Identities = 12/45 (26%), Positives = 24/45 (53%)

Query: 920 KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQAS 964
           K  L GH+  +T + F    +V+VS+  D+ + VW  +  + + +
Sbjct: 10  KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT 54

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.6 bits (88), Expect = 0.003
 Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 888 TFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGL 933
           T + FHP   +++    ED++I++++    + +  LKGH   +  +
Sbjct: 21  TRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI 65

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.7 bits (171), Expect = 3e-13
 Identities = 48/356 (13%), Positives = 101/356 (28%), Gaps = 25/356 (7%)

Query: 420 SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLS 479
            ++   W+ D T   +  + H VH+Y   G   ++ H E++ H G V  + ++  + ++ 
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGVDWAPDSNRI- 66

Query: 480 VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD 539
            VTCG DR   VW     T +           + C     N +     +    I    ++
Sbjct: 67  -VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125

Query: 540 NLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKR 599
                               S D             +     ++     V+         
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185

Query: 600 -----------------SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGL 642
                             V  V F    +R      +  +   D D    +A++ ++   
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL- 244

Query: 643 QASPCIRFNKEGILLAVSTNDNG-IKILANADGIRLLRTVESRTFDASRVASAAIVKAPA 701
                + F  E  L+A   +    +    +A G             +S+    A  +   
Sbjct: 245 -PLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQN 303

Query: 702 IGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKS-RIWKL 756
           +    S+  +     G  +    ++  +S           +     ++    IW +
Sbjct: 304 LDKKASSEGSAAAGAGLDSLHKNSVSQISV-LSGGKAKCSQFCTTGMDGGMSIWDV 358

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.0 bits (151), Expect = 7e-11
 Identities = 27/178 (15%), Positives = 62/178 (34%), Gaps = 6/178 (3%)

Query: 888  TFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVK--TKLKGHQKRITGLAFSNTLNVLVSS 945
            +  A++  D   IAI   +  + IY    ++     +LK H  ++TG+ ++   N +V+ 
Sbjct: 11   SCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 946  GADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEA 1005
            G D    VW+  G   + +  +   N            +     +         I  +E 
Sbjct: 70   GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSG---SRVISICYFEQ 126

Query: 1006 PKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAY 1063
                 + + + +     +    +  +S  +     +    + +A    +  R  PT +
Sbjct: 127  ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 184

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.1 bits (128), Expect = 6e-08
 Identities = 33/379 (8%), Positives = 85/379 (22%), Gaps = 25/379 (6%)

Query: 593 YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK 652
           YH      +    ++  + +     +   +  ++      +   +          + +  
Sbjct: 2   YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP 61

Query: 653 EGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANV 712
           +   +     D    +            V  R   A+R    A  +       GS   ++
Sbjct: 62  DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 121

Query: 713 GTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKS-----RIWKLTEITEPSQCRS 767
                E        +     S   +      +      S     RI+         +   
Sbjct: 122 CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP 181

Query: 768 LRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQP 827
                 +    +     ++ G  +  +  +A      W  ++              L   
Sbjct: 182 TPWGSKMPFGELMFESSSSCG-WVHGVCFSANGSRVAWVSHDSTV----------CLADA 230

Query: 828 PSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAA 887
              + +    S+T P   +         S V +       LF   +     +F       
Sbjct: 231 DKKMAVATLASETLP---LLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVP 287

Query: 888 TFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFS----NTLNVLV 943
              +              D                   H+  ++ ++         +   
Sbjct: 288 KQSS-QRGLTARERFQNLDKKASSEG-SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFC 345

Query: 944 SSGADSQLCVWSTDGWEKQ 962
           ++G D  + +W     E  
Sbjct: 346 TTGMDGGMSIWDVRSLESA 364

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.8 bits (109), Expect = 9e-06
 Identities = 36/361 (9%), Positives = 89/361 (24%), Gaps = 46/361 (12%)

Query: 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDY 417
            +    ++  +   + +  N  +V ++E    + + V   K                 ++
Sbjct: 9   PISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHELK-----------------EH 50

Query: 418 TASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQ 477
              V  V W+PD        +    +++T  G       + +  +  +          K 
Sbjct: 51  NGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKF 110

Query: 478 LSVVTCGEDRVIKVWDA-VTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
                     +            ++I +   S V S+  H    +    S   D K + +
Sbjct: 111 AVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS--CDFKCRIF 168

Query: 537 LYDNLGSRVDYDAPGHSSTMMA--------------YSADGARLFSCGTNKEGESYLVEW 582
                            S M                +    +   S       +S +   
Sbjct: 169 SAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLA 228

Query: 583 NESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN-------VNLLAS 635
           +  +     T          +     T++  +AAG +     +  D+          L  
Sbjct: 229 DADKKMAVATLASETLPL--LAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDV 286

Query: 636 IDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA--DGIRLLRTVESRTFDASRVAS 693
                    +   RF       +   +      L +   + +  +  +       S+  +
Sbjct: 287 PKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCT 346

Query: 694 A 694
            
Sbjct: 347 T 347

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (153), Expect = 4e-11
 Identities = 49/313 (15%), Positives = 95/313 (30%), Gaps = 25/313 (7%)

Query: 371 LLVVGTNMGDVMLWEVGSRERIAV---KSFKVWEL----GACSMPLQASLSSDYTASVNR 423
            +V G++   + +W   + + +      +  VW                    + A    
Sbjct: 29  RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGE 88

Query: 424 VMWSPDGTLFGVAYSKHIVHLYTYHGGDEL-----RNHLEIEAHVGSVNDLAFSYPNKQL 478
            + +  G    V               D           +    +               
Sbjct: 89  CIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR 148

Query: 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLY 538
            VV+   D ++KVWD  T T  +  +GH + VYS+          + S + D  I+ W  
Sbjct: 149 RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI----HVVSGSLDTSIRVWDV 204

Query: 539 DNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK 598
           +       +   GH S           L S   +      +  W+   G   +T  G  K
Sbjct: 205 ET--GNCIHTLTGHQSLTSGMELKDNILVSGNADST----VKIWDIKTGQCLQTLQGPNK 258

Query: 599 RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASI---DADGGLQASPCIRFNKEGI 655
               V      KN  + + D+  +K WD+     + ++   ++ G       IR +   +
Sbjct: 259 HQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL 318

Query: 656 LLAVSTNDNGIKI 668
           + AV + +   + 
Sbjct: 319 VCAVGSRNGTEET 331

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (152), Expect = 5e-11
 Identities = 34/210 (16%), Positives = 66/210 (31%), Gaps = 20/210 (9%)

Query: 459 IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHK 518
           ++ H   V      +   ++  V+  +D  +KVW AVTG       GH   V+S      
Sbjct: 12  LKGHDDHVIT-CLQFCGNRI--VSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR-- 66

Query: 519 ENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESY 578
                      D  I +   D      + +      T+  +++    +          S 
Sbjct: 67  -----------DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSR 115

Query: 579 LVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA 638
                  +    +  H L      V        R ++   +FM+K WD +    L ++  
Sbjct: 116 DATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQG 175

Query: 639 DGGLQASPCIRFNKEGILLAVSTNDNGIKI 668
                 +       +GI +   + D  I++
Sbjct: 176 ----HTNRVYSLQFDGIHVVSGSLDTSIRV 201

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 4e-07
 Identities = 39/276 (14%), Positives = 73/276 (26%), Gaps = 34/276 (12%)

Query: 362 MDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASV 421
                      V   ++ +  +        + V   +  +     M   A++        
Sbjct: 89  CIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR 148

Query: 422 NRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVV 481
             V  + D  +  V   +    L+T  G       L+ +                   VV
Sbjct: 149 RVVSGAYDFMVK-VWDPETETCLHTLQGHTNRVYSLQFDGIH----------------VV 191

Query: 482 TCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW-LYDN 540
           +   D  I+VWD  TG   +   GH+S    +          + S   D  +K W +   
Sbjct: 192 SGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN----ILVSGNADSTVKIWDIKTG 247

Query: 541 LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL---- 596
              +       H S +     +   + +   +      +  W+   G   R    L    
Sbjct: 248 QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDG----TVKLWDLKTGEFIRNLVTLESGG 303

Query: 597 GKRSVGVVQFDTTKNRFLAAGD----EFMIKFWDMD 628
               V  ++   TK            E  +   D D
Sbjct: 304 SGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 4e-06
 Identities = 18/128 (14%), Positives = 48/128 (37%), Gaps = 10/128 (7%)

Query: 840 TNPEDAVPCFALSKNDSYVMSA-SGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN 898
           T          +   D+ ++S  +   + ++++ T + + T   P    + +     + N
Sbjct: 212 TLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN 271

Query: 899 IIAIGMEDSSIQIYNVRVDEVKTKLK-----GHQKRITGLAFSNTLNVLVSSGAD----S 949
            +    +D ++++++++  E    L      G    +  +  SNT  V      +    +
Sbjct: 272 FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEET 331

Query: 950 QLCVWSTD 957
           +L V   D
Sbjct: 332 KLLVLDFD 339

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.004
 Identities = 7/50 (14%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 891 AFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLN 940
                  N I  G +D+++++++    +    L GH   +      + + 
Sbjct: 22  CLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNII 70

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.6 bits (150), Expect = 9e-11
 Identities = 32/336 (9%), Positives = 89/336 (26%), Gaps = 37/336 (11%)

Query: 350 VMTLNQG--SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSM 407
           ++ + Q     +  +   P +  LL++ +  G + +++               ++ A ++
Sbjct: 3   IVQIEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKF--------------DIQAKNV 47

Query: 408 PLQASLSSDYTASVNRVMWSPD-GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSV 466
            L  SL   Y   +    +  +      V   +  +      G    +     EA++G  
Sbjct: 48  DLLQSL--RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGIC 105

Query: 467 NDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFS 526
               +       +      + +                 + + V +       N   +  
Sbjct: 106 RICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIV 165

Query: 527 TATDGKIKAWLYDNLGS--------------RVDYDAPGHSSTMMAYSADGARLFSCGTN 572
              + +++ +                     R     P         S DG        +
Sbjct: 166 GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDD 225

Query: 573 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL 632
           +  +    +                   V  ++F         AG + +I  W++     
Sbjct: 226 QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK 285

Query: 633 LASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKI 668
           + +            ++      +L ++T+D+  K 
Sbjct: 286 IKNFA---KFNEDSVVKIACSDNILCLATSDDTFKT 318

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (106), Expect = 2e-05
 Identities = 23/152 (15%), Positives = 45/152 (29%), Gaps = 14/152 (9%)

Query: 362 MDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASV 421
           +   P +Q      +  G V +     +      S +                ++    V
Sbjct: 199 VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA----FRCHRLNLKDTNLAYPV 254

Query: 422 NRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVV 481
           N + +SP       A S  I+  +      +++N     A     + +  +  +  L   
Sbjct: 255 NSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF----AKFNEDSVVKIACSDNIL--C 308

Query: 482 TCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 513
               D   K   A+  T     E + S +Y I
Sbjct: 309 LATSDDTFKTNAAIDQT----IELNASSIYII 336

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 7e-05
 Identities = 8/68 (11%), Positives = 23/68 (33%), Gaps = 4/68 (5%)

Query: 890 LAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK---GHQKRITGLAFSNTLNVLVSSG 946
           +   P   +++ I   D S+ +Y   +      L     ++  +    F +  ++ +  G
Sbjct: 17  IKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVG 75

Query: 947 ADSQLCVW 954
                 + 
Sbjct: 76  TVQGEILK 83

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 0.001
 Identities = 8/72 (11%), Positives = 22/72 (30%), Gaps = 5/72 (6%)

Query: 923 LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTR 982
            +  +  I+ +    + ++L+ +  D  L V+  D   K      ++             
Sbjct: 7   EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN--- 63

Query: 983 VQFHLDQTHLLA 994
             F  +    + 
Sbjct: 64  --FIDNTDLQIY 73

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 0.002
 Identities = 26/234 (11%), Positives = 55/234 (23%), Gaps = 32/234 (13%)

Query: 800  HKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVM 859
              +                       +  +             +       +  N+S V 
Sbjct: 114  KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQ 173

Query: 860  SASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNV----- 914
                    L                     +A  P++    A    D  + +        
Sbjct: 174  -----WFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD 228

Query: 915  ----------RVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEK--Q 962
                      R   +  K       +  + FS     L ++G+D  +  W+    +K   
Sbjct: 229  DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN 288

Query: 963  ASKFLTI------PNGRT-ASALADTRVQFHLDQTHLLAVHETQIAI---YEAP 1006
             +KF          +      A +D   + +      + ++ + I I   YE P
Sbjct: 289  FAKFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQTIELNASSIYIIFDYENP 342

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.9 bits (148), Expect = 1e-10
 Identities = 41/342 (11%), Positives = 94/342 (27%), Gaps = 31/342 (9%)

Query: 338 SSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSF 397
           SS S  ++      T    +    + + P    +         V   + G  +   V  F
Sbjct: 1   SSISLKEIIPPQPSTQR--NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQF 58

Query: 398 KVWELGACSMPLQASLSSDYTASVNRVMWSP--DGTLFGVAYSKHIVHLYTYHGGDE--- 452
                           +   ++ V  V +SP               V ++ +    E   
Sbjct: 59  ----------------TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNS 102

Query: 453 --LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV 510
             +    E +   G ++D+++ +  ++L VV  G D         +G       GH   +
Sbjct: 103 VEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRI 162

Query: 511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSS--TMMAYSADGARLFS 568
            +        ++ +        +         S  D       S    + +S D      
Sbjct: 163 NACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVI 222

Query: 569 CGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMD 628
              +    S     +              +  +  + +  +  +F   G +  I+ WD+ 
Sbjct: 223 TVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDS-QKFATVGADATIRVWDVT 281

Query: 629 NVNLLASIDADGGLQASPCIRF--NKEGILLAVSTNDNGIKI 668
               +     D     +  +       G ++++S  D  +  
Sbjct: 282 TSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS-LDGTLNF 322

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 9e-06
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 480 VVTCGEDRVIKVWDAVTGT--KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
             T G D  I+VWD  T    +++  +  +     +      N   I S + DG +  +
Sbjct: 266 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.8 bits (101), Expect = 9e-05
 Identities = 20/126 (15%), Positives = 46/126 (36%), Gaps = 10/126 (7%)

Query: 876 TMTTFMPPPPA-----ATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVK--TKLKGHQK 928
           ++   +PP P+      T L++ P  N I     + + ++  +    +V    +  GH  
Sbjct: 4   SLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGS 63

Query: 929 R-ITGLAFSNTLN--VLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQF 985
             +T + FS       L S     ++ VW     ++  S  + + +     A   + + +
Sbjct: 64  SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW 123

Query: 986 HLDQTH 991
             +   
Sbjct: 124 DFEGRR 129

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 3e-04
 Identities = 3/94 (3%), Positives = 23/94 (24%), Gaps = 2/94 (2%)

Query: 400 WELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEI 459
           ++  +           +        +   D   F    +   + ++       ++    +
Sbjct: 233 FDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQK-WTL 291

Query: 460 EAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493
           +        +          +++   D  +  ++
Sbjct: 292 DKQQLGNQQVGVVATGNGR-IISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 4e-04
 Identities = 12/89 (13%), Positives = 27/89 (30%), Gaps = 3/89 (3%)

Query: 869 FNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQK 928
                F         P      A    D+   A    D++I++++V   +   K    ++
Sbjct: 235 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 294

Query: 929 RITGLAFS---NTLNVLVSSGADSQLCVW 954
           ++              ++S   D  L  +
Sbjct: 295 QLGNQQVGVVATGNGRIISLSLDGTLNFY 323

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 2e-10
 Identities = 34/346 (9%), Positives = 84/346 (24%), Gaps = 38/346 (10%)

Query: 325 ILPVAYTPQSLGQSSYSTDDLPKTV--VMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVM 382
           + PV + P +L         +P+    + TLN G  V ++      + +   G   G V 
Sbjct: 23  MQPVPFPPDALIGPG-----IPRHARQINTLNHGEVVCAVTISNPTRHVYTGGK--GCVK 75

Query: 383 LWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIV 442
           +W++                     P+      +    +      PDG    V      +
Sbjct: 76  VWDISH--------------PGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTL 121

Query: 443 HLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI 502
            ++               +                             +       +  +
Sbjct: 122 SIWDLAAPTPRIKAELTSSAPACYALAISPDSKVC-----FSCCSDGNIAVWDLHNQTLV 176

Query: 503 FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSAD 562
            +       + C     +   +++   D  +++W          +D        + Y   
Sbjct: 177 RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQ-IFSLGYCPT 235

Query: 563 GARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMI 622
           G  L     +   E   V   +           L       ++F      F++ G + ++
Sbjct: 236 GEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLS------LKFAYCGKWFVSTGKDNLL 289

Query: 623 KFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKI 668
             W       +        +        + +   +   + D    +
Sbjct: 290 NAWRTPYGASIFQSKESSSVL---SCDISVDDKYIVTGSGDKKATV 332

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (143), Expect = 6e-10
 Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 9/121 (7%)

Query: 416 DYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPN 475
           D+T+ +  + + P G    V      V +   +      +  ++  H   V  L F+Y  
Sbjct: 222 DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK----PDKYQLHLHESCVLSLKFAYCG 277

Query: 476 KQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKA 535
           K    V+ G+D ++  W    G   +      S V S      +  ++I + + D K   
Sbjct: 278 KWF--VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDD--KYIVTGSGDKKATV 332

Query: 536 W 536
           +
Sbjct: 333 Y 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 1e-08
 Identities = 7/112 (6%), Positives = 21/112 (18%), Gaps = 2/112 (1%)

Query: 844 DAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIG 903
             +          ++             +                 L F           
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY-CGKWFVST 283

Query: 904 MEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 955
            +D+ +  +         +       +     S     +V+   D +  V+ 
Sbjct: 284 GKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 5e-07
 Identities = 10/70 (14%), Positives = 25/70 (35%), Gaps = 6/70 (8%)

Query: 424 VMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTC 483
           + ++  G  F      ++++ +    G  +           SV     S  + +  +VT 
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----KESSSVLSCDIS-VDDKY-IVTG 324

Query: 484 GEDRVIKVWD 493
             D+   V++
Sbjct: 325 SGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 0.002
 Identities = 23/159 (14%), Positives = 49/159 (30%), Gaps = 12/159 (7%)

Query: 847  PCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED 906
             C  +S + + + +           +                 L + P    +      +
Sbjct: 187  SCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLA--VGME 244

Query: 907  SSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKF 966
            SS           K +L  H+  +  L F+      VS+G D+ L  W T          
Sbjct: 245  SSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-- 302

Query: 967  LTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYE 1004
                +  ++S L+       +D  +++    + +  +YE
Sbjct: 303  ----SKESSSVLS---CDISVDDKYIVTGSGDKKATVYE 334

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (145), Expect = 2e-10
 Identities = 44/286 (15%), Positives = 79/286 (27%), Gaps = 67/286 (23%)

Query: 462 HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENI 521
               V  L +   ++++  V+   D  IK+WD  T   + I  GH   V  +    +  I
Sbjct: 14  TSKGVYCLQYD--DQKI--VSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII 69

Query: 522 QFIFSTA------------------------------------TDGKIKAWLYDNLGSRV 545
                +                                      D  I  W   +     
Sbjct: 70  TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDIT 129

Query: 546 DYDA-PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVV 604
                 GH + +     D   + S   ++     +  WN S     RT +G      G+ 
Sbjct: 130 LRRVLVGHRAAVNVVDFDDKYIVSASGDR----TIKVWNTSTCEFVRTLNG---HKRGIA 182

Query: 605 QFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN 664
                    ++   +  I+ WD++    L  ++    L         +    +     D 
Sbjct: 183 CLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR----IVSGAYDG 238

Query: 665 GIKI--------LANADGIRLLRT-------VESRTFDASRVASAA 695
            IK+             G   LRT       V    FD  ++ S++
Sbjct: 239 KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSS 284

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 3e-07
 Identities = 26/151 (17%), Positives = 40/151 (26%), Gaps = 25/151 (16%)

Query: 395 KSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELR 454
           ++ KVW    C       + +                L     S + + L+    G  LR
Sbjct: 158 RTIKVWNTSTCEF-----VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLR 212

Query: 455 NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY---------IFEG 505
                        +L          +V+   D  IKVWD V                   
Sbjct: 213 VL-------EGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE 265

Query: 506 HESPVYSICPHHKENIQFIFSTATDGKIKAW 536
           H   V+ +          I S++ D  I  W
Sbjct: 266 HSGRVFRLQFDEF----QIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 6e-07
 Identities = 25/131 (19%), Positives = 41/131 (31%), Gaps = 15/131 (11%)

Query: 834 TNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAF 892
           T +   T          L   D  V+S S    I L+++     +            +  
Sbjct: 167 TCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE---LVRC 223

Query: 893 HPQDNNIIAIGMEDSSIQIYNVRVDEVKTK---------LKGHQKRITGLAFSNTLNVLV 943
              DN  I  G  D  I+++++                 L  H  R+  L F      +V
Sbjct: 224 IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ--IV 281

Query: 944 SSGADSQLCVW 954
           SS  D  + +W
Sbjct: 282 SSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (109), Expect = 7e-06
 Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 11/101 (10%)

Query: 480 VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW--- 536
           VV+   D  I++WD   G    + EGH      +    + + + I S A DGKIK W   
Sbjct: 191 VVSGSSDNTIRLWDIECGACLRVLEGH----EELVRCIRFDNKRIVSGAYDGKIKVWDLV 246

Query: 537 ----LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 573
                    G+        HS  +     D  ++ S   + 
Sbjct: 247 AALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDD 287

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 2e-04
 Identities = 19/133 (14%), Positives = 39/133 (29%), Gaps = 19/133 (14%)

Query: 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTAS 420
            +     +  L+V G++   + LW++     + V       +       +  +S  Y   
Sbjct: 180 GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGK 239

Query: 421 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSV 480
           + +V                 +                +  H G V  L F     +  +
Sbjct: 240 I-KVWDLVAALDPRAPAGTLCLR--------------TLVEHSGRVFRLQFD----EFQI 280

Query: 481 VTCGEDRVIKVWD 493
           V+   D  I +WD
Sbjct: 281 VSSSHDDTILIWD 293

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.5 bits (142), Expect = 8e-10
 Identities = 9/79 (11%), Positives = 28/79 (35%), Gaps = 6/79 (7%)

Query: 462 HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK-QYIFEGHESPVYSICPHHKEN 520
           H  +++ +   Y +  +  +  G +    +++  +G             ++S+    K  
Sbjct: 280 HHTNLSAITTFYVSDNI--LVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-- 335

Query: 521 IQFIFSTATDGKIKAWLYD 539
              + +   DG+    + D
Sbjct: 336 -TLVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.0 bits (138), Expect = 3e-09
 Identities = 44/369 (11%), Positives = 102/369 (27%), Gaps = 21/369 (5%)

Query: 590 KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIR 649
           + T  G     +  +QF+   N  +   D+ MI+ +D  N   L  +    G      ++
Sbjct: 5   RTTLRGHMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDG--GVWALK 60

Query: 650 FNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSAN 709
           +   GIL++ ST+               +    + T     +     +K    G+  +  
Sbjct: 61  YAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 120

Query: 710 ANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLR 769
                                       +    +       + +  ++         S  
Sbjct: 121 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYD 180

Query: 770 LPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPS 829
               +  +   + +Y  SG      ++   H+  +      ++T +    +  +L     
Sbjct: 181 NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ 240

Query: 830 GILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATF 889
           G      +   + +  V   A                             F       + 
Sbjct: 241 GHTALVGLLRLSDKFLVSAAADGSI--------------RGWDANDYSRKFSYHHTNLSA 286

Query: 890 LAFHPQDNNIIAIGMEDSSIQIYNVRVDE-VKTKLKGHQKRITGLAFSNTLNVLVSSGAD 948
           +      +NI+  G  ++   IYN+R  + V   +     +I  + F     ++ +   D
Sbjct: 287 ITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKD 344

Query: 949 SQLCVWSTD 957
            Q  +   D
Sbjct: 345 GQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.4 bits (126), Expect = 9e-08
 Identities = 12/59 (20%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 459 IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHH 517
           +  H+ SV      + +  +  +T  +D++I+V+D++         GH+  V+++   H
Sbjct: 8   LRGHMTSVIT-CLQFEDNYV--ITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH 63

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.1 bits (115), Expect = 2e-06
 Identities = 30/151 (19%), Positives = 58/151 (38%), Gaps = 8/151 (5%)

Query: 407 MPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSV 466
           +P + +L   +  SV       +           ++ +Y       L    ++  H G V
Sbjct: 2   VPQRTTLRG-HMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGV 56

Query: 467 NDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFS 526
             L +++      +V+   DR ++VWD   G   ++FEGH S V  +     +NI++I +
Sbjct: 57  WALKYAHGGI---LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT 113

Query: 527 TATDGKIKAWLYDNLGSRVDYDAPGHSSTMM 557
            + D  +  W      S  D+        + 
Sbjct: 114 GSRDNTLHVWKLPKESSVPDHGEEHDYPLVF 144

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 1e-05
 Identities = 19/119 (15%), Positives = 44/119 (36%), Gaps = 6/119 (5%)

Query: 896  DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 955
            ++N +  G +D  I++Y+    +   +L GH   +  L +++   +LVS   D  + VW 
Sbjct: 22   EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80

Query: 956  TDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQF 1014
                             R         V++   +  +    +  + +++ PK   +   
Sbjct: 81   IKKGCCTHVFEGHNSTVRC-----LDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH 134

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 8e-04
 Identities = 35/376 (9%), Positives = 87/376 (23%), Gaps = 82/376 (21%)

Query: 346 PKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGAC 405
           P+   +  +  S +  + F       ++ G +   + +++  +++ +             
Sbjct: 3   PQRTTLRGHMTSVITCLQFEDN---YVITGADDKMIRVYDSINKKFLLQ----------- 48

Query: 406 SMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGS 465
                    S +   V  + ++  G L     S             +       E H  +
Sbjct: 49  --------LSGHDGGVWALKYAHGGILV----SGSTDRTVRVWDIKKGCCTHVFEGHNST 96

Query: 466 VNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK------------QYIFEGHESPVYSI 513
           V  L          +VT   D  + VW     +              +           +
Sbjct: 97  VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 156

Query: 514 CPHHKENI-------QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARL 566
              H  ++         + S + D  +  W    +                 Y  +  R 
Sbjct: 157 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRC 216

Query: 567 FSCGTNK----------------------------------EGESYLVEWNESEGAVKRT 592
            S   +                                      +             R 
Sbjct: 217 ISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRK 276

Query: 593 YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK 652
           +         +  F  + +  L +G E     +++ +  L+ +            + F  
Sbjct: 277 FSYHHTNLSAITTFYVS-DNILVSGSENQFNIYNLRSGKLVHANI-LKDADQIWSVNFKG 334

Query: 653 EGILLAVSTNDNGIKI 668
           + ++ AV   D    +
Sbjct: 335 KTLVAAVE-KDGQSFL 349

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.9 bits (135), Expect = 4e-09
 Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 462 HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF-EGHESPVYSICPHHKEN 520
           H  ++  L+ S  + +  + +   +  I  WD  TG    +F + H + +  I    K +
Sbjct: 11  HNKAITALSSS-ADGKT-LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD 68

Query: 521 IQFIFS 526
           +  +  
Sbjct: 69  LFTVSW 74

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.2 bits (102), Expect = 5e-05
 Identities = 11/47 (23%), Positives = 16/47 (34%)

Query: 918 EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQAS 964
            +     GH K IT L+ S     L S+ A+  +  W          
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV 49

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.7 bits (98), Expect = 1e-04
 Identities = 25/285 (8%), Positives = 66/285 (23%), Gaps = 36/285 (12%)

Query: 418 TASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQ 477
             ++  +  S DG     A ++  ++ +    G   R     + H   +  +  +     
Sbjct: 12  NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP--DVHATMITGIKTTSKGDL 69

Query: 478 LSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT-------- 529
            +V      +V+    +   + + +     S    +      +I                
Sbjct: 70  FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK 129

Query: 530 --------------------------DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADG 563
                                               +  S  +     H + + + +   
Sbjct: 130 LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN 189

Query: 564 ARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIK 623
              F   T++  +        +               V  V +     R      +  + 
Sbjct: 190 NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVI 249

Query: 624 FWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKI 668
            W+M+  +    I       +S           +  +  D+ IK 
Sbjct: 250 VWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKF 294

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.9 bits (96), Expect = 3e-04
 Identities = 13/58 (22%), Positives = 17/58 (29%), Gaps = 4/58 (6%)

Query: 481 VTCGEDRVIKVWDAVTGTKQ--YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
            T   D  + VW+    +     I   H     +      E    I S   D  IK W
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET--TIVSAGQDSNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.5 bits (95), Expect = 4e-04
 Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 425 MWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG 484
            WSPD          + V ++  +   +    ++    + SVN + +      +  V+ G
Sbjct: 231 SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-NETTI--VSAG 287

Query: 485 EDRVIKVWD 493
           +D  IK W+
Sbjct: 288 QDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.1 bits (94), Expect = 5e-04
 Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 4/93 (4%)

Query: 866 ISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE---VKTK 922
                       T       A         DN  +A G  D+S+ ++N+       +  K
Sbjct: 205 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK 264

Query: 923 LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 955
                  +  + + N    +VS+G DS +  W+
Sbjct: 265 GAHAMSSVNSVIWLNE-TTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.4 bits (87), Expect = 0.004
 Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 497 GTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
           G+   +  GH   + ++      + + +FS   +G I +W
Sbjct: 2   GSIDQVRYGHNKAITALSSSA--DGKTLFSADAEGHINSW 39

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (86), Expect = 0.004
 Identities = 32/286 (11%), Positives = 71/286 (24%), Gaps = 18/286 (6%)

Query: 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAV---------------KSFKVWE 401
            A+ ++      +  L      G +  W++ +     V                   ++ 
Sbjct: 13  KAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT 71

Query: 402 LGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEA 461
           +                 S   V         G+A S                       
Sbjct: 72  VSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLT 131

Query: 462 HVG-SVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKEN 520
            V  S N    +  N +  V   G+D  + V+     +   +         +        
Sbjct: 132 EVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNG 191

Query: 521 IQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLV 580
              + +  +   I   + +N           H++ +   S     +     + +    + 
Sbjct: 192 AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW 251

Query: 581 EWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD 626
             N+               SV  V +   +   ++AG +  IKFW+
Sbjct: 252 NMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWN 296

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 55.1 bits (131), Expect = 2e-08
 Identities = 38/359 (10%), Positives = 85/359 (23%), Gaps = 56/359 (15%)

Query: 371 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG 430
            ++V     ++ + +V S                    +  S            M +PD 
Sbjct: 10  YMIVTNYPNNLHVVDVASDT------------------VYKSCVMPDKFGPGTAMMAPDN 51

Query: 431 TLFGVAYSK----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED 486
               V  +     + + L T                  S+   A S   K++        
Sbjct: 52  RTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQ 111

Query: 487 RV----------IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
           R+          ++V+    G +         P         ++     +     K+   
Sbjct: 112 RLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVK 171

Query: 537 LYD-----NLGSRVDYDAPGHSSTMMAYSADGARLFSC-------------GTNKEGESY 578
                    L +                       FS                  +    
Sbjct: 172 TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 231

Query: 579 LVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA 638
            +  +   G                      K+     G    +  +D+    L+ + + 
Sbjct: 232 YLSVDLKTGKTHTQEFADLTELYFTGLRS-PKDPNQIYGVLNRLAKYDLKQRKLIKAANL 290

Query: 639 DGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIV 697
           D       C+ F+K+G  L +    N + +  N D +  ++ ++    D S   +  + 
Sbjct: 291 DHTYY---CVAFDKKGDKLYLGGTFNDLAVF-NPDTLEKVKNIKLPGGDMS-TTTPQVF 344

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 49.7 bits (117), Expect = 1e-06
 Identities = 37/377 (9%), Positives = 81/377 (21%), Gaps = 42/377 (11%)

Query: 604 VQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND 663
                     +       +   D+ +  +  S                 +     V  N 
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPG-TAMMAPDNRTAYVLNNH 60

Query: 664 NGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPA 723
            G     + D  +        +       S         G    A  N    L +     
Sbjct: 61  YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 120

Query: 724 AAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVS--- 780
              +                         ++   +  E    R+  +P  +  MR +   
Sbjct: 121 PPRL------------------------EVFSTADGLEAKPVRTFPMPRQVYLMRAADDG 156

Query: 781 RLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDT 840
            L      +  + + +             R      +       W   S           
Sbjct: 157 SLYVAGPDIYKMDVKTGKYTVALPLRNWNR---KGYSAPDVLYFWPHQSP-------RHE 206

Query: 841 NPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNII 900
                              +         ++ T KT T          F       +   
Sbjct: 207 FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ 266

Query: 901 AIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWE 960
                 + +  Y+++  ++             +AF    + L   G  + L V++ D  E
Sbjct: 267 IY-GVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE 324

Query: 961 KQASKFLTIPNGRTASA 977
           K  +  + +P G  ++ 
Sbjct: 325 KVKN--IKLPGGDMSTT 339

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 48.2 bits (113), Expect = 4e-06
 Identities = 26/243 (10%), Positives = 53/243 (21%), Gaps = 10/243 (4%)

Query: 366 PVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 425
           P Q++          + ++                      M      S          M
Sbjct: 109 PTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKM 168

Query: 426 WSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE 485
               G        ++                 +   H  S+      + + +    T   
Sbjct: 169 DVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 228

Query: 486 DRVIKVWDAVTGTKQYI-FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR 544
                  D  TG      F       ++     K+  Q         ++  +        
Sbjct: 229 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQ-RKL 284

Query: 545 VDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTY-HGLGKRSVGV 603
           +      H+   +A+   G +L+  GT  +    L  +N       +      G  S   
Sbjct: 285 IKAANLDHTYYCVAFDKKGDKLYLGGTFND----LAVFNPDTLEKVKNIKLPGGDMSTTT 340

Query: 604 VQF 606
            Q 
Sbjct: 341 PQV 343

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.2 bits (128), Expect = 3e-08
 Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 869 FNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD-EVKTKLKGHQ 927
                  +    +   PA         + +++A G  D++I IY+V+   ++   L  H+
Sbjct: 199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK 258

Query: 928 KRITGLAFSNTLNVLVSSGADSQLCVWS 955
             +  L +    + LVSSGAD+ +  W+
Sbjct: 259 DGVNNLLWETP-STLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.1 bits (120), Expect = 3e-07
 Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 13/78 (16%)

Query: 449 GGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES 508
           G DE+   +    H   +  L  +       +++   D  I  W + +       + H +
Sbjct: 1   GHDEVLKTIS--GHNKGITALTVN------PLISGSYDGRIMEWSSSSM-----HQDHSN 47

Query: 509 PVYSICPHHKENIQFIFS 526
            + S+     +    I  
Sbjct: 48  LIVSLDNSKAQEYSSISW 65

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.6 bits (111), Expect = 4e-06
 Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 4/57 (7%)

Query: 481 VTCGEDRVIKVWDAVTGTKQY-IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
            T   D  I ++      K       H+  V ++          + S+  D  IK W
Sbjct: 231 ATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP---STLVSSGADACIKRW 284

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.6 bits (103), Expect = 4e-05
 Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 5/102 (4%)

Query: 394 VKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDEL 453
           ++S +V          + +  S   A         +  L         + +Y+     ++
Sbjct: 191 LQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI 250

Query: 454 RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV 495
              L   AH   VN+L +  P+    +V+ G D  IK W+ V
Sbjct: 251 IKALN--AHKDGVNNLLWETPST---LVSSGADACIKRWNVV 287

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 6e-04
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 917 DEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLT 968
           DEV   + GH K IT L  +     L+S   D ++  WS+    +  S  + 
Sbjct: 3   DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIV 50

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.5 bits (129), Expect = 4e-08
 Identities = 34/241 (14%), Positives = 64/241 (26%), Gaps = 7/241 (2%)

Query: 324 NILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVML 383
              P A    SL  +   T +L  TV   +       S+D       L+  G N G V +
Sbjct: 152 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQI 209

Query: 384 WEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVH 443
            E+ +   +     +   +   +       S   +        +  G +           
Sbjct: 210 SELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERI 269

Query: 444 LYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF 503
                     +  L   AH   V  L+F+   +   + + G D  ++ WD  T  +    
Sbjct: 270 GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET--LCSAGWDGKLRFWDVKTKERITTL 327

Query: 504 EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADG 563
             H   +         +     S A  G                     + ++     D 
Sbjct: 328 NMHCDDIEIEEDILAVDEHG-DSLAEPGVFDVKFLKKGWRSGMGA--DLNESLCCVCLDR 384

Query: 564 A 564
           +
Sbjct: 385 S 385

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.7 bits (127), Expect = 8e-08
 Identities = 25/208 (12%), Positives = 60/208 (28%), Gaps = 42/208 (20%)

Query: 460 EAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE------GHESPVYSI 513
           +AH   +  ++    N     V+C  D  +KVWD      +   +       H+S ++ +
Sbjct: 11  KAHDADIFSVSAC--NSFT--VSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66

Query: 514 C-----PHHKENIQFIFSTATDGKIKAW----------LYDNLGSRVDYDAPGHSSTMMA 558
                       +  + +T+  G +  +          +       +D D   HS   + 
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 126

Query: 559 YSADG----------------ARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVG 602
           + A                    ++      +  + L         ++ T       S  
Sbjct: 127 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF 186

Query: 603 VVQFDTTKNRFLAAGDE-FMIKFWDMDN 629
               D ++   +A G     ++  ++  
Sbjct: 187 ATSVDISERGLIATGFNNGTVQISELST 214

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 4e-05
 Identities = 46/392 (11%), Positives = 103/392 (26%), Gaps = 25/392 (6%)

Query: 602 GVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVST 661
            +       +  ++   +  +K WD   ++     D             +   +L A+  
Sbjct: 16  DIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK-SGLHHVDVLQAIER 74

Query: 662 NDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTA 721
           +   + ++A       L        D ++      +          +   +         
Sbjct: 75  DAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRL 134

Query: 722 PAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSR 781
            +  +V        +       ADE+   +  W  T   + +    +      T++ +S 
Sbjct: 135 LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE 194

Query: 782 --LIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISD 839
             LI T      + +           P     S      N         S       I+ 
Sbjct: 195 RGLIATGFNNGTVQI----SELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH 250

Query: 840 TNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNI 899
            +          ++    + S S    S    +     ++++        L+F+      
Sbjct: 251 DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWV------MSLSFNDS-GET 303

Query: 900 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRI----TGLAFSNTLNVLVSSGADSQLCVWS 955
           +     D  ++ ++V+  E  T L  H   I      LA     + L   G      V+ 
Sbjct: 304 LCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG------VFD 357

Query: 956 TDGWEK-QASKFLTIPNGRTASALADTRVQFH 986
               +K   S      N        D  +++ 
Sbjct: 358 VKFLKKGWRSGMGADLNESLCCVCLDRSIRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 4e-05
 Identities = 23/214 (10%), Positives = 62/214 (28%), Gaps = 49/214 (22%)

Query: 499 KQYI-----FEGHESPVYSICPHHKENIQFIFSTATDGKIKAW-------------LYDN 540
           K +I      + H++ ++S+   +     F  S + DG +K W              Y +
Sbjct: 1   KVFIATANAGKAHDADIFSVSACNS----FTVSCSGDGYLKVWDNKLLDNENPKDKSYSH 56

Query: 541 LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKE--------GESYLVEWNESEGAVKRT 592
              +           +   + +   + +   + +         +       E    +   
Sbjct: 57  FVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSD 116

Query: 593 YHGLGKRSVGVVQFD--TTKNRFLAAGDEFMIKFWDM-----DNVNLLASIDADGGLQAS 645
                  ++     +     +R +A   +     W       ++ +L  +      LQ +
Sbjct: 117 MKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT 176

Query: 646 P-----------CIRFNKEGILLAVSTNDNGIKI 668
                        +  ++ G L+A   N+  ++I
Sbjct: 177 VESPMTPSQFATSVDISERG-LIATGFNNGTVQI 209

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 0.002
 Identities = 15/164 (9%), Positives = 33/164 (20%), Gaps = 30/164 (18%)

Query: 412 SLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAF 471
           S  + +T S      S DG L        +         +          H   ++ +  
Sbjct: 21  SACNSFTVSC-----SGDGYL-------KVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68

Query: 472 -----SYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKE------- 519
                    +   V T      +  +      +       +  +                
Sbjct: 69  LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG 128

Query: 520 ------NIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMM 557
                     + +T   G    W +       +      S T+ 
Sbjct: 129 ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLE 172

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 0.002
 Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 2/48 (4%)

Query: 923 LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIP 970
            K H   I  ++  N  +  VS   D  L VW     + +  K  +  
Sbjct: 10  GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYS 55

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.7 bits (119), Expect = 4e-07
 Identities = 12/96 (12%), Positives = 23/96 (23%), Gaps = 5/96 (5%)

Query: 464 GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQF 523
           G+   L  + P         G    +      + T   I+  H             +  +
Sbjct: 18  GTAVVLGNT-PAGDKIQYCNGTS--VYTVPVGSLTDTEIYTEHSHQTTVAKTSP--SGYY 72

Query: 524 IFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAY 559
             S    G ++ W        +    P  S  +   
Sbjct: 73  CASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDI 108

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.6 bits (111), Expect = 5e-06
 Identities = 12/73 (16%), Positives = 19/73 (26%), Gaps = 2/73 (2%)

Query: 887 ATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSG 946
           A  L   P   + I      +S+    V           H  + T    S +     S  
Sbjct: 20  AVVLGNTP-AGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77

Query: 947 ADSQLCVWSTDGW 959
               + +W T   
Sbjct: 78  VHGNVRIWDTTQT 90

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.4 bits (108), Expect = 1e-05
 Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 1/89 (1%)

Query: 870 NMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQK- 928
               F+  +        + F      D   IA    D +I+I+NV   +V+  +    + 
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282

Query: 929 RITGLAFSNTLNVLVSSGADSQLCVWSTD 957
               L    T   LVS  A+  +   + +
Sbjct: 283 EDQQLGIIWTKQALVSISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.3 bits (105), Expect = 3e-05
 Identities = 31/272 (11%), Positives = 68/272 (25%), Gaps = 19/272 (6%)

Query: 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSD 416
                    P        G   G+V +W+          +     L          +   
Sbjct: 59  HQTTVAKTSP-SGYYCASGDVHGNVRIWD---------TTQTTHILKTTIPVFSGPVKDI 108

Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
              S ++ + +         +        +          +       S      S  + 
Sbjct: 109 SWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDD 168

Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
               V   E    K         +++     +P  S+      +   +     DG     
Sbjct: 169 N--TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV 226

Query: 537 LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL 596
             D+    V +         + +S DG ++ S   +K     +  WN +   V++T    
Sbjct: 227 FEDDSLKNVAHSGSVF---GLTWSPDGTKIASASADK----TIKIWNVATLKVEKTIPVG 279

Query: 597 GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMD 628
            +     +    TK   ++      I F + +
Sbjct: 280 TRIEDQQLGIIWTKQALVSISANGFINFVNPE 311

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.4 bits (116), Expect = 1e-06
 Identities = 35/304 (11%), Positives = 76/304 (25%), Gaps = 48/304 (15%)

Query: 418 TASVNRVMWSPDGTLFGVAYSKH-------------IVHLYTYHGGDELRNHLEIEAHVG 464
              +   + + DG+    A +               +    T     ++         VG
Sbjct: 46  GGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVG 105

Query: 465 S-VNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQF 523
           +     + +   K L          + V D      + + +  +                
Sbjct: 106 TYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT----- 160

Query: 524 IFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMM------AYSADGARLFSCGTNKEGES 577
            F    DG +    +   G+                    AYS    RL       +   
Sbjct: 161 FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQ 220

Query: 578 YLVEWNESEGAVKRTYHGLGKRSVG-----------------VVQFDTTKNRFLAAGDEF 620
             +   +++           +R+ G                 +      ++ +       
Sbjct: 221 IDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASR 280

Query: 621 MIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG--ILLAVSTNDNGIKILANADGIRLL 678
            +   D      LA  +    + +   I  +++   +L A+ST D  + I     G   L
Sbjct: 281 FVVVLDAKTGERLAKFEMGHEIDS---INVSQDEKPLLYALSTGDKTLYIHDAESG-EEL 336

Query: 679 RTVE 682
           R+V 
Sbjct: 337 RSVN 340

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.0 bits (102), Expect = 8e-05
 Identities = 14/166 (8%), Positives = 38/166 (22%), Gaps = 11/166 (6%)

Query: 341 STDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVW 400
                 + ++           + +      +  +  + GD            A ++    
Sbjct: 188 VFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR 247

Query: 401 ELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIE 460
                    Q +            +       +    +   V +     G+ L       
Sbjct: 248 ----PGGWQQVAYHRALD---RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF---- 296

Query: 461 AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH 506
                ++ +  S   K L       D+ + + DA +G +       
Sbjct: 297 EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 342

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.7 bits (96), Expect = 3e-04
 Identities = 27/293 (9%), Positives = 64/293 (21%), Gaps = 13/293 (4%)

Query: 424 VMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSV--- 480
              +PD     V    H   +      D     +      G + +   +     ++    
Sbjct: 7   EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHAST 66

Query: 481 -----VTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHK-----ENIQFIFSTATD 530
                        ++V+D VT       E  ++P + +  +        + + +      
Sbjct: 67  VFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS 126

Query: 531 GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK 590
                 + D  G              +  +A       C      +         E    
Sbjct: 127 PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT 186

Query: 591 RTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRF 650
             +H   +  +    +     R +       I   D+ + +       +   +A     +
Sbjct: 187 EVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGW 246

Query: 651 NKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIG 703
              G              L             SR        +   +    +G
Sbjct: 247 RPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG 299

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 47.5 bits (111), Expect = 5e-06
 Identities = 17/161 (10%), Positives = 42/161 (26%), Gaps = 17/161 (10%)

Query: 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLS--- 414
            V +  F  V +  ++            V          + + ++   S P+        
Sbjct: 208 VVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYR 267

Query: 415 -----SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDL 469
                       +  +       +  A  K ++  Y            ++     ++ DL
Sbjct: 268 MIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR-------KVTEVKNNLTDL 320

Query: 470 AFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV 510
             S   K +  +   +D  I  +       +   E  + P+
Sbjct: 321 RLSADRKTV--MVRKDDGKIYTFPLEKPEDERTVETDKRPL 359

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.8 bits (96), Expect = 3e-04
 Identities = 24/217 (11%), Positives = 54/217 (24%), Gaps = 13/217 (5%)

Query: 412 SLSSDYTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLA 470
           S+ S +        +SP DG L     S+    +    G   L+           +  + 
Sbjct: 1   SIPSKFAED-----FSPLDGDLIAFV-SRGQAFIQDVSGTYVLK-----VPEPLRIRYVR 49

Query: 471 FSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATD 530
                K   +    E   + ++D  TG  +   E   +        + +           
Sbjct: 50  RGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEI 109

Query: 531 GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK 590
             +              +A     T+   S   A  F     +     +   +  +   +
Sbjct: 110 MTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR 169

Query: 591 RTYHGLGKRSVGVVQFDTTKNRFLA-AGDEFMIKFWD 626
           + +    + S          ++ L       +    D
Sbjct: 170 KIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD 206

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 40.6 bits (93), Expect = 9e-04
 Identities = 10/130 (7%), Positives = 33/130 (25%), Gaps = 13/130 (10%)

Query: 843 EDAVPCFALSKNDSYVMSASGGKISLFNMMT--------FKTMTTFMPPPPAATFLAFHP 894
             +     L        +       ++   +        ++ +          +      
Sbjct: 227 PGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGE 286

Query: 895 QDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 954
                     E   +  Y+V+      K+   +  +T L  S     ++    D ++  +
Sbjct: 287 -FAAYYQGAPEKGVLLKYDVK----TRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTF 341

Query: 955 STDGWEKQAS 964
             +  E + +
Sbjct: 342 PLEKPEDERT 351

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 40.2 bits (92), Expect = 0.001
 Identities = 24/335 (7%), Positives = 79/335 (23%), Gaps = 48/335 (14%)

Query: 344 DLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGD-VMLWEVGSRERIAVKSFKVWEL 402
           D+  T V+ + +   ++ +      ++  + GT  GD + +++  + +    +       
Sbjct: 30  DVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVF 89

Query: 403 GA----------------------CSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKH 440
                                           +     A +     S +       +   
Sbjct: 90  AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLK 149

Query: 441 IVHLYTYHGGDELRNHLEIEAHVGS----VNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT 496
                 Y         +E      +     +D A ++     ++       +    D V 
Sbjct: 150 HGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 209

Query: 497 G-------TKQYIFEGHESPVYSICPHHKEN---IQFIFSTATDGKIKAWLYDNLGSRVD 546
                   +K ++               +                +      D    R+ 
Sbjct: 210 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMI 269

Query: 547 YDAPGHSS--TMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVV 604
                     ++  +    A              L++++     V    +      +  +
Sbjct: 270 IPLESSILIYSVPVHGEFAAYYQGAPEKGV----LLKYDVKTRKVTEVKNN-----LTDL 320

Query: 605 QFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD 639
           +    +   +   D+  I  + ++      +++ D
Sbjct: 321 RLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETD 355

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 39.8 bits (91), Expect = 0.001
 Identities = 13/80 (16%), Positives = 22/80 (27%), Gaps = 5/80 (6%)

Query: 885 PAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVS 944
           P+     F P D ++IA        Q +   V            RI  +       V   
Sbjct: 3   PSKFAEDFSPLDGDLIAFVSRG---QAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFI 59

Query: 945 SGADS--QLCVWSTDGWEKQ 962
            G      L ++     + +
Sbjct: 60  HGTREGDFLGIYDYRTGKAE 79

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.0 bits (107), Expect = 2e-05
 Identities = 23/352 (6%), Positives = 78/352 (22%), Gaps = 46/352 (13%)

Query: 371 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG 430
            ++       +++ +         K   + + G                +    M +P G
Sbjct: 3   YILAPARPDKLVVIDTEKMA--VDKVITIADAGP---------------TPMVPMVAPGG 45

Query: 431 TLFGVAYSK-HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVI 489
            +     +K   +       G+ L             +    +      ++        +
Sbjct: 46  RIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRL 105

Query: 490 KVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL------GS 543
           ++        +      E+            I  +       K+     D        G+
Sbjct: 106 ELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGT 165

Query: 544 RVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSV-- 601
            V+               D   +++   +    +        +                 
Sbjct: 166 LVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD 225

Query: 602 ----------------GVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQAS 645
                                     +  A G   +++ +D++    +  +         
Sbjct: 226 LETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYY-- 283

Query: 646 PCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIV 697
             +  + +G  + +      +    +A+ +     V+     +  +AS  + 
Sbjct: 284 -SVNVSTDGSTVWLGGALGDLAAY-DAETLEKKGQVDLPGNASMSLASVRLF 333

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.6 bits (101), Expect = 9e-05
 Identities = 36/375 (9%), Positives = 95/375 (25%), Gaps = 44/375 (11%)

Query: 610 KNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKIL 669
           ++  LA      +   D + + +   I                 G +   + N +   + 
Sbjct: 1   RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60

Query: 670 ANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGM 729
            +      L  ++  T +    +      +P   T                         
Sbjct: 61  IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYE-------------------- 100

Query: 730 SNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGL 789
                +   ++    +    +  ++    ++      + R    L   R    +Y     
Sbjct: 101 -----SPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG-- 153

Query: 790 AILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCF 849
                           P        K   +   + +  P  + + N    +         
Sbjct: 154 ---------RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYT 204

Query: 850 ALSKNDSYVMSASGGKISLFNMMTFK-TMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSS 908
           A    D    +A    +   ++ T +  M             A +P            + 
Sbjct: 205 ARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKT---RAFGAYNV 261

Query: 909 IQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLT 968
           ++ +++  +    ++         +  S   + +   GA   L  +  +  EK+    + 
Sbjct: 262 LESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQ--VD 318

Query: 969 IPNGRTASALADTRV 983
           +P G  + +LA  R+
Sbjct: 319 LP-GNASMSLASVRL 332

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.6 bits (93), Expect = 7e-04
 Identities = 27/270 (10%), Positives = 63/270 (23%), Gaps = 15/270 (5%)

Query: 342 TDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWE 401
             DL        +   A  S D   +      V   +    +         A    +   
Sbjct: 71  RIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKA 130

Query: 402 LGACSMPLQASLSSDYT---ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLE 458
             A       + + D +        +          V            +   ++     
Sbjct: 131 FEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWN 190

Query: 459 IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI-FEGHESPVYSICPHH 517
                G +    ++                +   D  TG          +   +S   + 
Sbjct: 191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP 250

Query: 518 KENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGES 577
            +   F         ++++  +   + +      HS   +  S DG+ ++  G   +   
Sbjct: 251 AKTRAFGA----YNVLESFDLEK-NASIKRVPLPHSYYSVNVSTDGSTVWLGGALGD--- 302

Query: 578 YLVEWNESEGAVKRTY--HGLGKRSVGVVQ 605
            L  ++      K      G    S+  V+
Sbjct: 303 -LAAYDAETLEKKGQVDLPGNASMSLASVR 331

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.8 bits (102), Expect = 1e-04
 Identities = 12/181 (6%), Positives = 35/181 (19%), Gaps = 13/181 (7%)

Query: 451 DELRNHLEIEAHVGSV-NDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESP 509
            E+R   ++                   L  VT  +   I + D  +     + +   + 
Sbjct: 5   PEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAV 64

Query: 510 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-----APGHSSTMMAYSADGA 564
            +          +++     D +I              +           +      +  
Sbjct: 65  -HISRMSASG--RYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDR 121

Query: 565 RLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKF 624
              +               + E    +        +V    +                +F
Sbjct: 122 YTIAGAYW----PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF 177

Query: 625 W 625
            
Sbjct: 178 I 178

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 41.9 bits (97), Expect = 3e-04
 Identities = 32/284 (11%), Positives = 63/284 (22%), Gaps = 27/284 (9%)

Query: 336 GQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVK 395
            + + +    P    +   +    K +       +          V            + 
Sbjct: 120 DRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV 179

Query: 396 SFK----VWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGD 451
           + K    V  +    +      S      +    W      F  A +             
Sbjct: 180 NVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDR 239

Query: 452 ELRNHLEIEAHVGSVNDLAFSYPN-KQLSVVTCGEDRVI-------KVWDAVTGTKQYIF 503
            L   +++           F +P    +   +   D  I       K        K    
Sbjct: 240 RLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL 299

Query: 504 EGHESPVYSICPHHKE-NIQFIFSTATDGKIKAWLY-------------DNLGSRVDYDA 549
           +G       I  H K  ++    +   D +I   +                +    D   
Sbjct: 300 QGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGE 359

Query: 550 PGHSSTMMAYSADGARL-FSCGTNKEGESYLVEWNESEGAVKRT 592
                    Y+  G  + FS    K   S LV  ++    +K  
Sbjct: 360 GAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAV 403

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 41.5 bits (96), Expect = 4e-04
 Identities = 25/248 (10%), Positives = 69/248 (27%), Gaps = 27/248 (10%)

Query: 340 YSTDDLPKTVVMTLNQGS-AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFK 398
           +   ++ ++  + +       K ++   +  +  V   + G + L +  S++ + V    
Sbjct: 2   WGMPEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKV---- 57

Query: 399 VWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLE 458
             + G                +V+    S  G    V      + +       E     E
Sbjct: 58  -IDTGY---------------AVHISRMSASGRYLLVIGRDARIDMIDLWAK-EPTKVAE 100

Query: 459 IEA---HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICP 515
           I+         +     Y ++   +          + D  T   + I       V +   
Sbjct: 101 IKIGIEARSVESSKFKGYEDRYT-IAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTY 159

Query: 516 HHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG 575
           H +  +  I ++    +    + +  G  +  +     +  +        L   G +   
Sbjct: 160 HPEPRVAAIIASHEHPEFIVNVKET-GKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSH 218

Query: 576 ESYLVEWN 583
             ++   N
Sbjct: 219 RYFMTAAN 226

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 24/209 (11%), Positives = 54/209 (25%), Gaps = 17/209 (8%)

Query: 847  PCFALSKNDSYVMSASG-GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGME 905
                    + + ++    G+I+L +  T++  T       A             + +   
Sbjct: 24   QMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVL-DTGYAVHISRLSA-SGRYLFVIGR 81

Query: 906  DSSIQIYNV------RVDEVKTKLKGHQKRITGLAFSNTLN-VLVSSGADSQLCVWSTDG 958
            D  + + ++       V E+K      +   T           +  +    Q  +   + 
Sbjct: 82   DGKVNMIDLWMKEPTTVAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET 140

Query: 959  WEKQASKFLTIPNGRTASALADTRVQF----HLDQTHLLAVHET-QIAIYEAPKLECLKQ 1013
             E +  +              + RV      H     ++ V ET +I + +   L  LK 
Sbjct: 141  LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKT 200

Query: 1014 FVPREASGPITHATYSCDSQSIYVAFEEG 1042
                               +    A    
Sbjct: 201  TEISAERFL-HDGGLDGSHRYFITAANAR 228

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 21/196 (10%), Positives = 48/196 (24%), Gaps = 15/196 (7%)

Query: 451 DELRNHLEIEAHVGSV-NDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESP 509
            E+R   ++              +  + L  VT  +   I + D  T   + + +   + 
Sbjct: 5   KEMRESWKVHVAPEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAV 64

Query: 510 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY-----DAPGHSSTMMAYSADGA 564
            +          +++F    DGK+                          T      +  
Sbjct: 65  -HISRLSASG--RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDK 121

Query: 565 RLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAA---GDEFM 621
              +           V  +      K+     G            +   + A     EF+
Sbjct: 122 YAIAGA---YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI 178

Query: 622 IKFWDMDNVNLLASID 637
           +   +   + L+   D
Sbjct: 179 VNVKETGKILLVDYTD 194

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 41/342 (11%), Positives = 86/342 (25%), Gaps = 37/342 (10%)

Query: 347 KTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACS 406
             +   L+ G AV         + L V+G + G V + ++  +E   V   K+       
Sbjct: 52  YEIKTVLDTGYAVHISRLSASGRYLFVIGRD-GKVNMIDLWMKEPTTVAEIKI------- 103

Query: 407 MPLQASLSSDYTASVNRVMWSPDG-TLFGVAYSKHIVHLYTYHGGDELRNH-------LE 458
                   S+  +     M   +       AY      +      +  +          E
Sbjct: 104 -------GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDE 156

Query: 459 IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHK 518
            E H         +   +   +V   E   I + D          E              
Sbjct: 157 QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG 216

Query: 519 ENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESY 578
            +  FI +     K+              D  G +      +           +      
Sbjct: 217 SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN--------FVHPTFGPV 268

Query: 579 LVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMD-NVNLLASID 637
               +  + +V     G          +    +     G    IK       + + A+++
Sbjct: 269 WATSHMGDDSV--ALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN 326

Query: 638 ADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLR 679
            +  +  S  + F+ +   +    +D   K L  A+   +  
Sbjct: 327 PEAEISGSVAV-FDIK--AMTGDGSDPEFKTLPIAEWAGITE 365

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.5 bits (96), Expect = 4e-04
 Identities = 27/301 (8%), Positives = 66/301 (21%), Gaps = 46/301 (15%)

Query: 418 TASVNRVMWSPDGTLFGVA---YSK----------HIVHLYTYHGGDELRNHLEIE-AHV 463
            A ++  +    G+ F +A   +++           +    T+    ++        +  
Sbjct: 64  GAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123

Query: 464 GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQF 523
             V+ +     +  L +                 +   + +                   
Sbjct: 124 PRVHIIGNCASSACL-LFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAA-----T 177

Query: 524 IFSTATDGKIKAWLYDNLGSRVDYD------APGHSSTMMAYSADGARLFSCGT------ 571
            +  +    + A       +           A   SS     +  G  +++  +      
Sbjct: 178 HYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGD 237

Query: 572 -NKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFM-------IK 623
               G +     + +E   K          +     +T     L                
Sbjct: 238 IPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTS 297

Query: 624 FWDMDNVNLLASIDADGGLQASPCIRFNKEG--ILLAVSTNDNGIKILANADGIRLLRTV 681
                       I       A   I   ++G     A S     + I   A   +   +V
Sbjct: 298 SVTASVGQTSGPISNGHDSDA---IIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSV 353

Query: 682 E 682
           E
Sbjct: 354 E 354

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.6 bits (91), Expect = 0.002
 Identities = 14/173 (8%), Positives = 37/173 (21%), Gaps = 8/173 (4%)

Query: 341 STDDLPKTVVMTLNQGSAVKSMDFHPV----QQILLVVGTNMGDVMLWEVGSRERIAVKS 396
                P    +   Q +  ++            +L+    +               A   
Sbjct: 191 DLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAID 250

Query: 397 FKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNH 456
                  A +             + + +M            +       T   G      
Sbjct: 251 GNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG-- 308

Query: 457 LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESP 509
               ++    + +  +      +        V+ ++DA +   Q   E  + P
Sbjct: 309 --PISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP 359

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 41.0 bits (94), Expect = 6e-04
 Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 2/93 (2%)

Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
             A+ + +  +P+GT   V       +  +       +    I         +A + P+ 
Sbjct: 198 VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVT-PDG 255

Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESP 509
           +   V       + V D  T T        ++P
Sbjct: 256 KKVYVALSFCNTVSVIDTATNTITATMAVGKNP 288

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 22/142 (15%), Positives = 41/142 (28%), Gaps = 13/142 (9%)

Query: 833 MTNDISDTNPEDAVP-CFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLA 891
              +  D      V    A  K  ++          +      +  T ++P P     L 
Sbjct: 206 TMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESE-FTRYIPVPKNPHGLN 264

Query: 892 FHPQDNNIIAIGMEDSSIQIYNV-RVDEVKTKLKGHQKRITG----------LAFSNTLN 940
             P     IA G    ++ +  + ++D++       +  I              F    N
Sbjct: 265 TSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGN 324

Query: 941 VLVSSGADSQLCVWSTDGWEKQ 962
              +   DSQ+C W+     K 
Sbjct: 325 AYTTLFIDSQVCKWNIADAIKH 346

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1134
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.98
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.94
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.89
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.87
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.87
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.86
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.86
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.85
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.83
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.8
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.75
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.74
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.74
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.72
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.64
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.55
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.53
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.5
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.5
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.45
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.16
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.15
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.11
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.06
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.06
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.0
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.97
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.93
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.88
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.87
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.85
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.84
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.74
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.73
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.73
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.54
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.44
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.28
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.2
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.16
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.7
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.69
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.65
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.63
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.63
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.6
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.6
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.57
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.57
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.57
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.56
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.56
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.53
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.5
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.41
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.28
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.23
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.15
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.13
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.0
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.96
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.92
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	96.52
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.43
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.64
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.24
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	93.53
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	93.48
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	92.7
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	92.08
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	90.76
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	90.1
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	88.34
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	84.52
d2nxpa1	149	TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId	84.5
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	81.53

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-36  Score=334.22  Aligned_cols=294  Identities=14%  Similarity=0.183  Sum_probs=251.5

Q ss_pred             ceeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEE
Q 001163          347 KTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW  426 (1134)
Q Consensus       347 ~~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  426 (1134)
                      .+.+++++|...|+|++|||+|++ ||+|+ ||.|+|||+.++.....              .......+|.+.|.+++|
T Consensus        42 ~~~~~~~~H~~~V~~v~fs~~g~~-latg~-dg~V~iWd~~~~~~~~~--------------~~~~~~~~h~~~I~~v~~  105 (337)
T d1gxra_          42 ARQINTLNHGEVVCAVTISNPTRH-VYTGG-KGCVKVWDISHPGNKSP--------------VSQLDCLNRDNYIRSCKL  105 (337)
T ss_dssp             EEEEEEECCSSCCCEEEECSSSSE-EEEEC-BSEEEEEETTSTTCCSC--------------SEEEECSCTTSBEEEEEE
T ss_pred             ceEEEECCCCCcEEEEEECCCCCE-EEEEE-CCEEEEEEccCCcccce--------------eEEeeecCCCCcEEEEEE
Confidence            456778899999999999999995 57887 89999999987654321              111124679999999999


Q ss_pred             cCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCC
Q 001163          427 SPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH  506 (1134)
Q Consensus       427 spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h  506 (1134)
                      +|||++|++|+.||.|++||+...... ....+.+|...|.+++|+|++.  ++++++.|+.|++||+.++++.....+|
T Consensus       106 s~dg~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~~~~~~~~~~~~~~~~  182 (337)
T d1gxra_         106 LPDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLVRQFQGH  182 (337)
T ss_dssp             CTTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             cCCCCEEEEeecccccccccccccccc-cccccccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence            999999999999999999999865432 2336788999999999999999  8999999999999999999999999999


Q ss_pred             CcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCC
Q 001163          507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE  586 (1134)
Q Consensus       507 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~  586 (1134)
                      ...|.+++|++  ++..+++++.|+.|++||+++.+....+. +...|.+++|+|+++++++++.++    .+++||+.+
T Consensus       183 ~~~v~~l~~s~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~----~i~i~d~~~  255 (337)
T d1gxra_         183 TDGASCIDISN--DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESS----NVEVLHVNK  255 (337)
T ss_dssp             SSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTS----CEEEEETTS
T ss_pred             ccccccccccc--cccccccccccccccccccccceeecccc-cccceEEEEEcccccccceecccc----ccccccccc
Confidence            99999999865  44899999999999999998776555443 566899999999999999987654    499999998


Q ss_pred             CeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcE
Q 001163          587 GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGI  666 (1134)
Q Consensus       587 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i  666 (1134)
                      ++... ...|.. .|.+++|+|++++|++++.||.|++||..+++.+..+..   ...|.+++|+|++++|++++.||+|
T Consensus       256 ~~~~~-~~~~~~-~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~---~~~v~~~~~s~d~~~l~t~s~D~~I  330 (337)
T d1gxra_         256 PDKYQ-LHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISVDDKYIVTGSGDKKA  330 (337)
T ss_dssp             SCEEE-ECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---SSCEEEEEECTTSCEEEEEETTSCE
T ss_pred             ccccc-cccccc-ccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccC---CCCEEEEEEeCCCCEEEEEeCCCeE
Confidence            87754 445554 899999999999999999999999999999999887753   5679999999999999999999999


Q ss_pred             EEEEc
Q 001163          667 KILAN  671 (1134)
Q Consensus       667 ~iw~~  671 (1134)
                      +|||+
T Consensus       331 ~vWdl  335 (337)
T d1gxra_         331 TVYEV  335 (337)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99986

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-35  Score=325.33  Aligned_cols=282  Identities=12%  Similarity=0.153  Sum_probs=240.5

Q ss_pred             ccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC
Q 001163          775 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN  854 (1134)
Q Consensus       775 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d  854 (1134)
                      |...|.+++|+|+|++|++++ ||.|+|||+.....                  ..........  +|...|.+++|+||
T Consensus        50 H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~------------------~~~~~~~~~~--~h~~~I~~v~~s~d  108 (337)
T d1gxra_          50 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN------------------KSPVSQLDCL--NRDNYIRSCKLLPD  108 (337)
T ss_dssp             CSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC------------------CSCSEEEECS--CTTSBEEEEEECTT
T ss_pred             CCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcc------------------cceeEEeeec--CCCCcEEEEEEcCC
Confidence            889999999999999999987 89999999874311                  0011111122  38899999999999


Q ss_pred             CCeEEEee-CCeEEEEEccC--CeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceE
Q 001163          855 DSYVMSAS-GGKISLFNMMT--FKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRIT  931 (1134)
Q Consensus       855 g~~la~~s-dg~i~lwd~~~--~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~  931 (1134)
                      |++|++++ ||+|++||+..  .+....+..|...+.+++|+| ++.++++++.|+.|++|++.+++......+|...|.
T Consensus       109 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~  187 (337)
T d1gxra_         109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS  187 (337)
T ss_dssp             SSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             CCEEEEeeccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            99999998 89999999864  456677888999999999999 899999999999999999999999999999999999


Q ss_pred             EEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCccc
Q 001163          932 GLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLEC 1010 (1134)
Q Consensus       932 ~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~~~ 1010 (1134)
                      +++|++++..+++++.|+.|++||+.+++.     +.... +.   ..+.+++|+|++++|++ +.|+.+++||+.+++.
T Consensus       188 ~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~-----~~~~~-~~---~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~  258 (337)
T d1gxra_         188 CIDISNDGTKLWTGGLDNTVRSWDLREGRQ-----LQQHD-FT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK  258 (337)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTTEE-----EEEEE-CS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE
T ss_pred             ccccccccccccccccccccccccccccee-----ecccc-cc---cceEEEEEcccccccceecccccccccccccccc
Confidence            999999999999999999999999988653     22222 11   46899999999999998 5889999999998886


Q ss_pred             ceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEE
Q 001163         1011 LKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALG 1090 (1134)
Q Consensus      1011 ~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~ 1090 (1134)
                      ....   .|...|++++|+|||++|++++.||+|++||+.+++.+..+.        |.+.|.++  +|+| ++++|++|
T Consensus       259 ~~~~---~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~--------~~~~v~~~--~~s~-d~~~l~t~  324 (337)
T d1gxra_         259 YQLH---LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--------ESSSVLSC--DISV-DDKYIVTG  324 (337)
T ss_dssp             EEEC---CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--------CSSCEEEE--EECT-TSCEEEEE
T ss_pred             cccc---ccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc--------CCCCEEEE--EEeC-CCCEEEEE
Confidence            5433   689999999999999999999999999999999998876544        56778776  7889 68999999


Q ss_pred             ecCCcEEEEeC
Q 001163         1091 LTDGGVYIIEP 1101 (1134)
Q Consensus      1091 ~~Dg~v~vW~~ 1101 (1134)
                      +.||+|+|||+
T Consensus       325 s~D~~I~vWdl  335 (337)
T d1gxra_         325 SGDKKATVYEV  335 (337)
T ss_dssp             ETTSCEEEEEE
T ss_pred             eCCCeEEEEEE
Confidence            99999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.1e-34  Score=315.51  Aligned_cols=287  Identities=15%  Similarity=0.183  Sum_probs=242.4

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la  434 (1134)
                      +.+.+.+++++|+|+.+ |.+ .++.|.+||+.+++....                   +.+|...|++++|+|+|++||
T Consensus        16 ~r~~~~~~a~~~~g~~l-~~~-~~~~v~i~~~~~~~~~~~-------------------~~~H~~~v~~~~~sp~g~~la   74 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKI-QYC-NGTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYCA   74 (311)
T ss_dssp             CTTCCCCCEECTTSSEE-EEE-ETTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEEE
T ss_pred             CCCCeEEEEEcCCCCEE-EEE-eCCEEEEEECCCCceeEE-------------------EcCCCCCEEEEEEeCCCCeEe
Confidence            34566789999999965 454 356799999998766543                   678999999999999999999


Q ss_pred             EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeC--CCeEEEEECCCCceeEEecCCCcCEEE
Q 001163          435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE--DRVIKVWDAVTGTKQYIFEGHESPVYS  512 (1134)
Q Consensus       435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~h~~~v~~  512 (1134)
                      +|+.||+|+|||+.+++.... ..+.+|.++|.+++|+|+++  +|++++.  +..+++|++++++.+..+.+|...|.+
T Consensus        75 tg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~d~~--~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~  151 (311)
T d1nr0a1          75 SGDVHGNVRIWDTTQTTHILK-TTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS  151 (311)
T ss_dssp             EEETTSEEEEEESSSTTCCEE-EEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEE
T ss_pred             ccccCceEeeeeeeccccccc-cccccccCcccccccccccc--cccccccccccccccccccccccccccccccccccc
Confidence            999999999999998875432 35788999999999999999  6777775  567999999999999999999999999


Q ss_pred             EeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEE
Q 001163          513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRT  592 (1134)
Q Consensus       513 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~  592 (1134)
                      ++|+++.+ ..+++|+.|+.|++||+++.+.......+...|.++.|+|+++++++++.++    .+++||..++.....
T Consensus       152 v~~~~~~~-~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~----~v~~~d~~~~~~~~~  226 (311)
T d1nr0a1         152 VDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG----TIVLYNGVDGTKTGV  226 (311)
T ss_dssp             EEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS----CEEEEETTTCCEEEE
T ss_pred             ccccccce-eeecccccccccccccccccccccccccccccccccccCccccccccccccc----ccccccccccccccc
Confidence            99976542 3688999999999999998888888888888999999999999999998654    499999999988877


Q ss_pred             ecC-------CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCc
Q 001163          593 YHG-------LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNG  665 (1134)
Q Consensus       593 ~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~  665 (1134)
                      +..       |. ..|.+++|+|++++|++|+.||.|+|||+++++++..+..+.. .....+.+.+++..|++++.||.
T Consensus       227 ~~~~~~~~~~h~-~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~-~~~~~~~~~~~~~~l~s~s~dG~  304 (311)
T d1nr0a1         227 FEDDSLKNVAHS-GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR-IEDQQLGIIWTKQALVSISANGF  304 (311)
T ss_dssp             CBCTTSSSCSSS-SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-GGGCEEEEEECSSCEEEEETTCC
T ss_pred             cccccccccccc-ccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCC-ccceEEEEEecCCEEEEEECCCE
Confidence            653       33 3799999999999999999999999999999999998876532 12334455556678999999999


Q ss_pred             EEEEEcc
Q 001163          666 IKILANA  672 (1134)
Q Consensus       666 i~iw~~~  672 (1134)
                      |++||.+
T Consensus       305 i~~wd~d  311 (311)
T d1nr0a1         305 INFVNPE  311 (311)
T ss_dssp             EEEEETT
T ss_pred             EEEEeCC
Confidence            9999963

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.8e-34  Score=315.96  Aligned_cols=285  Identities=20%  Similarity=0.378  Sum_probs=258.2

Q ss_pred             Eee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCC
Q 001163          352 TLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG  430 (1134)
Q Consensus       352 ~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~  430 (1134)
                      .|. |.+.|++|+|+|+++ +|++|+.||+|+|||+.+++.+..                   +.+|...|.+++|+|++
T Consensus        12 ~L~GH~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~~~-------------------~~~h~~~V~~~~~~~~~   71 (317)
T d1vyhc1          12 ALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHSG   71 (317)
T ss_dssp             EEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTTS
T ss_pred             EEcCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------EeCCCCcEEEEeeeccc
Confidence            444 999999999999998 568999999999999999987654                   67899999999999999


Q ss_pred             CEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCE
Q 001163          431 TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV  510 (1134)
Q Consensus       431 ~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v  510 (1134)
                      .++++++.++.+.+|+....+...   .+.+|...+.++.|++++.  .+++++.|+.+++||+.+++.+..+.+|...+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  146 (317)
T d1vyhc1          72 KLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWV  146 (317)
T ss_dssp             SEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             cccccccccccccccccccccccc---ccccccccceeeeccCCCc--eEEeeccCcceeEeecccceeeeEEccCCCcc
Confidence            999999999999999998876544   5778999999999999999  79999999999999999999999999999999


Q ss_pred             EEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCC--------------------CEEEEEe
Q 001163          511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADG--------------------ARLFSCG  570 (1134)
Q Consensus       511 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~--------------------~~l~~~~  570 (1134)
                      .++++++  ++.+|++++.|+.|++|++........+..+...+..+.++|++                    ..+++++
T Consensus       147 ~~~~~~~--~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (317)
T d1vyhc1         147 RMVRPNQ--DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS  224 (317)
T ss_dssp             EEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred             eeeeccc--CCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEecc
Confidence            9999865  45899999999999999999988888888888889999888764                    3566666


Q ss_pred             cCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEE
Q 001163          571 TNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRF  650 (1134)
Q Consensus       571 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  650 (1134)
                      .    ++.|++||..+++++.++.+|.. .+.+++|+|++++|++++.||.|++||+.+++++..+..|  ...|++++|
T Consensus       225 ~----d~~i~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h--~~~V~~~~~  297 (317)
T d1vyhc1         225 R----DKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH--EHFVTSLDF  297 (317)
T ss_dssp             T----TSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC--SSCEEEEEE
T ss_pred             C----CCEEEEEECCCCcEEEEEeCCCC-CEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCC--CCCEEEEEE
Confidence            5    34699999999999999999887 8999999999999999999999999999999999999865  668999999


Q ss_pred             cCCCcEEEEEECCCcEEEEE
Q 001163          651 NKEGILLAVSTNDNGIKILA  670 (1134)
Q Consensus       651 sp~~~~l~~~~~dg~i~iw~  670 (1134)
                      +|++++|++|+.||+|++||
T Consensus       298 s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         298 HKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CSSSSCEEEEETTSEEEEEC
T ss_pred             cCCCCEEEEEeCCCeEEEeC
Confidence            99999999999999999996

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.3e-34  Score=316.73  Aligned_cols=315  Identities=19%  Similarity=0.315  Sum_probs=268.1

Q ss_pred             EEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEe
Q 001163          491 VWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCG  570 (1134)
Q Consensus       491 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  570 (1134)
                      .|. ......++++||.++|++++|+++  +++|++|+.||+|++||+.+.+....+..|...|.+++|+|++..++++.
T Consensus         2 ~w~-p~~~~~~~L~GH~~~I~~l~~sp~--~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~   78 (317)
T d1vyhc1           2 EWI-PRPPEKYALSGHRSPVTRVIFHPV--FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS   78 (317)
T ss_dssp             CCC-CCSSCSCEEECCSSCEEEEEECSS--SSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccC-CCCCccEEEcCCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccc
Confidence            353 234456789999999999999764  48999999999999999999999999999999999999999999999987


Q ss_pred             cCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEE
Q 001163          571 TNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRF  650 (1134)
Q Consensus       571 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  650 (1134)
                      .+.    .+..|+....+....+..+.. .+..+.++++++.+++++.|+.+++||+.+++.+..+..+  ...+.+++|
T Consensus        79 ~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  151 (317)
T d1vyhc1          79 ADM----TIKLWDFQGFECIRTMHGHDH-NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH--REWVRMVRP  151 (317)
T ss_dssp             TTS----CCCEEETTSSCEEECCCCCSS-CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEE
T ss_pred             ccc----ccccccccccccccccccccc-cceeeeccCCCceEEeeccCcceeEeecccceeeeEEccC--CCcceeeec
Confidence            644    488899998888888887776 8899999999999999999999999999999999988865  668899999


Q ss_pred             cCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCC
Q 001163          651 NKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMS  730 (1134)
Q Consensus       651 sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  730 (1134)
                      +|++.+|++++.|+.+++|+..++ .....+.+                                               
T Consensus       152 ~~~~~~l~~~~~d~~v~~~~~~~~-~~~~~~~~-----------------------------------------------  183 (317)
T d1vyhc1         152 NQDGTLIASCSNDQTVRVWVVATK-ECKAELRE-----------------------------------------------  183 (317)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTC-CEEEEECC-----------------------------------------------
T ss_pred             ccCCCEEEEEeCCCeEEEEeeccc-eeeEEEec-----------------------------------------------
Confidence            999999999999999999998876 23322221                                               


Q ss_pred             CCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCC
Q 001163          731 NDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNER  810 (1134)
Q Consensus       731 ~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~  810 (1134)
                                                                  +...+.++.|+|++.........+            
T Consensus       184 --------------------------------------------~~~~i~~~~~~~~~~~~~~~~~~~------------  207 (317)
T d1vyhc1         184 --------------------------------------------HRHVVECISWAPESSYSSISEATG------------  207 (317)
T ss_dssp             --------------------------------------------CSSCEEEEEECCSCGGGGGGGCCS------------
T ss_pred             --------------------------------------------CCCCceEEEEeeccccceeecccc------------
Confidence                                                        456678888888876544333221            


Q ss_pred             CcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEE
Q 001163          811 NSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATF  889 (1134)
Q Consensus       811 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~  889 (1134)
                                                         ........++.++++++ |+.|++||+.+++++.++.+|...|.+
T Consensus       208 -----------------------------------~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~  252 (317)
T d1vyhc1         208 -----------------------------------SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG  252 (317)
T ss_dssp             -----------------------------------CC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred             -----------------------------------ceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEE
Confidence                                               11223345677888888 899999999999999999999999999


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 001163          890 LAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS  955 (1134)
Q Consensus       890 l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd  955 (1134)
                      ++|+| ++++|++|+.||.|+|||+.+++++.++.+|.+.|++++|+|++++|+||+.||+|+|||
T Consensus       253 ~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         253 VLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEECC-CCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            99999 899999999999999999999999999999999999999999999999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-33  Score=322.33  Aligned_cols=308  Identities=16%  Similarity=0.232  Sum_probs=242.9

Q ss_pred             eeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc
Q 001163          348 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS  427 (1134)
Q Consensus       348 ~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  427 (1134)
                      .+...++|.+.|+||+|||||+ +||+|+ |++|+|||+.+++.+.......... ............+|...|++++|+
T Consensus        54 ~l~~~~~H~~~V~~l~fs~dg~-~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~V~~l~~s  130 (388)
T d1erja_          54 ELHKSLDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAAN-KDPENLNTSSSPSSDLYIRSVCFS  130 (388)
T ss_dssp             EEEEEEECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEEC
T ss_pred             eeEeeCCCCCcEEEEEECCCCC-EEEEEe-CCeEEEEEecccceEeeeccccccc-ccccccccccccCCCCCEEEEEEC
Confidence            4456678999999999999999 568886 8999999999988765421110000 000111122345788999999999


Q ss_pred             CCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCC
Q 001163          428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE  507 (1134)
Q Consensus       428 pd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~  507 (1134)
                      |+|++|++|+.||.|++||...++.+.   .+.+|...|.+++|++++.  .+++++.++.+++||..+.........+.
T Consensus       131 ~~~~~l~s~~~dg~v~i~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  205 (388)
T d1erja_         131 PDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLSIED  205 (388)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred             CCCCcceeccccccccccccccccccc---ccccccccccccccccccc--cccccccceeeeeeecccccccccccccc
Confidence            999999999999999999999988665   5788999999999999998  79999999999999999998888777665


Q ss_pred             cCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeee-------cCCCCCeeEEEECcCCCEEEEEecCCCCCeEEE
Q 001163          508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY-------DAPGHSSTMMAYSADGARLFSCGTNKEGESYLV  580 (1134)
Q Consensus       508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~  580 (1134)
                      ..+ ++.+.+ .++.+|++++.|+.|++||..+......+       ..+...|.+++|+|++++|++++.++    .|+
T Consensus       206 ~~~-~~~~~~-~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~----~i~  279 (388)
T d1erja_         206 GVT-TVAVSP-GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR----SVK  279 (388)
T ss_dssp             CEE-EEEECS-TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS----EEE
T ss_pred             ccc-cccccC-CCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCC----cEE
Confidence            544 445443 45689999999999999999877665543       23556899999999999999998644    699


Q ss_pred             EEeCCCCee------------EEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceE
Q 001163          581 EWNESEGAV------------KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCI  648 (1134)
Q Consensus       581 ~wd~~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v  648 (1134)
                      +||+.++..            ......|.. .+.+++|+|++++|++|+.||.|++||+.+++++..+..|  ...|.++
T Consensus       280 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H--~~~V~~~  356 (388)
T d1erja_         280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH--RNSVISV  356 (388)
T ss_dssp             EEEC---------------CEEEEEECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEE
T ss_pred             EEeccCCccccccccccccceeeecccccc-eEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCC--CCCEEEE
Confidence            999976543            233344444 8999999999999999999999999999999999999866  6678887


Q ss_pred             EE------cCCCcEEEEEECCCcEEEEEcc
Q 001163          649 RF------NKEGILLAVSTNDNGIKILANA  672 (1134)
Q Consensus       649 ~~------sp~~~~l~~~~~dg~i~iw~~~  672 (1134)
                      ++      +|++.+|++|+.||+|+||+++
T Consensus       357 ~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         357 AVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            64      6789999999999999999974

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.2e-33  Score=309.59  Aligned_cols=284  Identities=14%  Similarity=0.130  Sum_probs=232.3

Q ss_pred             ccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC
Q 001163          775 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN  854 (1134)
Q Consensus       775 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d  854 (1134)
                      +.+.+..++++|+|+.++.++ ++.+.+|++..                      +..... +.+  |...|++++|+|+
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~----------------------~~~~~~-~~~--H~~~v~~~~~sp~   69 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGS----------------------LTDTEI-YTE--HSHQTTVAKTSPS   69 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTC----------------------SSCCEE-ECC--CSSCEEEEEECTT
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCC----------------------CceeEE-EcC--CCCCEEEEEEeCC
Confidence            445667889999999998875 55788887653                      222211 233  9999999999999


Q ss_pred             CCeEEEee-CCeEEEEEccCCeEE--EEecCCCCCeEEEEEcCCCCcEEEEEeCC--CcEEEEEcccceEEEeccCccCc
Q 001163          855 DSYVMSAS-GGKISLFNMMTFKTM--TTFMPPPPAATFLAFHPQDNNIIAIGMED--SSIQIYNVRVDEVKTKLKGHQKR  929 (1134)
Q Consensus       855 g~~la~~s-dg~i~lwd~~~~~~~--~~~~~~~~~v~~l~~sp~~~~~la~g~~d--g~i~iwd~~~~~~~~~l~~h~~~  929 (1134)
                      |++|++|+ ||+|+|||+.+++..  ..+..|...|.+++|+| ++++|++++.+  ..++||++.+++....+.+|.+.
T Consensus        70 g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~  148 (311)
T d1nr0a1          70 GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARA  148 (311)
T ss_dssp             SSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECT-TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSC
T ss_pred             CCeEeccccCceEeeeeeeccccccccccccccCccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            99999998 999999999887643  55788999999999999 88899888764  56999999999999999999999


Q ss_pred             eEEEEEeeCCCE-EEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE-eeceEEEEeCCC
Q 001163          930 ITGLAFSNTLNV-LVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPK 1007 (1134)
Q Consensus       930 V~~l~~s~d~~~-l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~iwd~~~ 1007 (1134)
                      |++++|+|++++ +++|+.|+.|++||+.+++     ......+|.   ..|.+++|+|++++++++ .|+.|++||..+
T Consensus       149 v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~-----~~~~~~~~~---~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~  220 (311)
T d1nr0a1         149 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-----FKSTFGEHT---KFVHSVRYNPDGSLFASTGGDGTIVLYNGVD  220 (311)
T ss_dssp             EEEEEECSSSSCEEEEEETTSCEEEEETTTBE-----EEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             cccccccccceeeecccccccccccccccccc-----ccccccccc---ccccccccCcccccccccccccccccccccc
Confidence            999999999985 8889999999999999855     444445554   469999999999999984 789999999998


Q ss_pred             cccceeec-----cCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEEecCC
Q 001163         1008 LECLKQFV-----PREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIAGNPT 1082 (1134)
Q Consensus      1008 ~~~~~~~~-----~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~p~ 1082 (1134)
                      ++....+.     ..+|...|++++|+|||++|++|+.||+|+|||+.+++++..+....      ......+++.|+  
T Consensus       221 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~------~~~~~~~~~~~~--  292 (311)
T d1nr0a1         221 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT------RIEDQQLGIIWT--  292 (311)
T ss_dssp             CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS------SGGGCEEEEEEC--
T ss_pred             ccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCC------CccceEEEEEec--
Confidence            88776654     23688999999999999999999999999999999999887665221      112233444553  


Q ss_pred             CCCEEEEEecCCcEEEEeCC
Q 001163         1083 DPNQFALGLTDGGVYIIEPL 1102 (1134)
Q Consensus      1083 ~~~~l~s~~~Dg~v~vW~~~ 1102 (1134)
                       +++|++++.||.|++||++
T Consensus       293 -~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         293 -KQALVSISANGFINFVNPE  311 (311)
T ss_dssp             -SSCEEEEETTCCEEEEETT
T ss_pred             -CCEEEEEECCCEEEEEeCC
Confidence             4689999999999999974

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.8e-33  Score=311.07  Aligned_cols=342  Identities=18%  Similarity=0.277  Sum_probs=247.7

Q ss_pred             ccccCCCCE-EEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEE
Q 001163          413 LSSDYTASV-NRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV  491 (1134)
Q Consensus       413 ~~~~h~~~V-~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i  491 (1134)
                      .|.||...| +|++  +++++||+|+.||+|+|||+.+++.+.   ++.+|.++|++++|++++   +|++|+.|++|++
T Consensus         7 tL~GH~~~vitc~~--~~~~~l~tgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~l~~s~~~---~l~s~s~D~~i~i   78 (355)
T d1nexb2           7 TLRGHMTSVITCLQ--FEDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRV   78 (355)
T ss_dssp             EEECCSSSCEEEEE--EETTEEEEEETTTEEEEEETTTTEEEE---EEECCSSCEEEEEEETTT---EEEEEETTCCEEE
T ss_pred             EECCcCCCcEEEEE--ECCCEEEEEeCCCeEEEEECCCCcEEE---EEECCCCCEEEEEEcCCC---EEEEEeccccccc
Confidence            478999886 5555  468999999999999999999988666   688999999999999864   6999999999999


Q ss_pred             EECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEec
Q 001163          492 WDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGT  571 (1134)
Q Consensus       492 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  571 (1134)
                      |+....+.......+............+++.++++++.|+.|++||+............. ........+...       
T Consensus        79 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~-------  150 (355)
T d1nexb2          79 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH-DYPLVFHTPEEN-------  150 (355)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC------------CCCEEESCTTTC-------
T ss_pred             ccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccc-eeccceeccccc-------
Confidence            999999988877666655555554456677899999999999999987654433222111 111111111111       


Q ss_pred             CCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEc
Q 001163          572 NKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFN  651 (1134)
Q Consensus       572 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  651 (1134)
                                     .........+.. .+  ..+.++++.++++..|+.|++||+.+++.+.....+  ...+.++.|+
T Consensus       151 ---------------~~~~~~~~~~~~-~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~  210 (355)
T d1nexb2         151 ---------------PYFVGVLRGHMA-SV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH--TDRIYSTIYD  210 (355)
T ss_dssp             ---------------TTEEEEEECCSS-CE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEEE
T ss_pred             ---------------cceeeeeeeccc-cc--cccccccceeeeecccceeeeeecccccceeeeecc--cccccccccc
Confidence                           111222222222 23  345667889999999999999999999988887654  5578899999


Q ss_pred             CCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCC
Q 001163          652 KEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSN  731 (1134)
Q Consensus       652 p~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  731 (1134)
                      |++.++++++.|+.|++|+..++ .....+.                                                 
T Consensus       211 ~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~-------------------------------------------------  240 (355)
T d1nexb2         211 HERKRCISASMDTTIRIWDLENG-ELMYTLQ-------------------------------------------------  240 (355)
T ss_dssp             TTTTEEEEEETTSCEEEEETTTC-CEEEEEC-------------------------------------------------
T ss_pred             ccceeeecccccceEEeeecccc-ccccccc-------------------------------------------------
Confidence            99999999999999999998765 1111111                                                 


Q ss_pred             CCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCC
Q 001163          732 DSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERN  811 (1134)
Q Consensus       732 ~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~  811 (1134)
                                                                                                      
T Consensus       241 --------------------------------------------------------------------------------  240 (355)
T d1nexb2         241 --------------------------------------------------------------------------------  240 (355)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEE
Q 001163          812 STGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFL  890 (1134)
Q Consensus       812 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l  890 (1134)
                                                   +|...|.+++++  +++|++++ ||+|++||+.++......  |...+.++
T Consensus       241 -----------------------------~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~  287 (355)
T d1nexb2         241 -----------------------------GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY--HHTNLSAI  287 (355)
T ss_dssp             -----------------------------CCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEEE--ECTTCCCC
T ss_pred             -----------------------------cccccccccccc--cceeeeeecccccccccccccceeccc--ccCCceEE
Confidence                                         155556666664  35677776 778888887766554333  45555554


Q ss_pred             -EEcCCCCcEEEEEeCCCcEEEEEcccceEEE-eccCccCceEEEEEeeCCCEEEEEeCCCcEEEEEC
Q 001163          891 -AFHPQDNNIIAIGMEDSSIQIYNVRVDEVKT-KLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWST  956 (1134)
Q Consensus       891 -~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~-~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~  956 (1134)
                       ++++ +++++++|+ ||.|+|||+.+++++. .+.+|.++|++++|+|+ .++++++.||+++||.+
T Consensus       288 ~~~~~-~~~~l~~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         288 TTFYV-SDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             CEEEE-CSSEEEEEE-TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             EEEcC-CCCEEEEEe-CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence             4556 777777665 8999999999999885 57889999999999986 47888999999777654

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.6e-33  Score=314.63  Aligned_cols=348  Identities=12%  Similarity=0.203  Sum_probs=258.3

Q ss_pred             EEEEeCCCEEEEEEccCCceeee-eeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEE
Q 001163          433 FGVAYSKHIVHLYTYHGGDELRN-HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY  511 (1134)
Q Consensus       433 las~s~dg~v~iwd~~~~~~~~~-~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~  511 (1134)
                      .+.+..++.+.+|+....+.+.. .....+|.+.|+||+|+|||+  +|++|+ |++|+|||+.+++.+..+..+.....
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~--~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~  107 (388)
T d1erja_          31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGE--YLATGC-NKTTQVYRVSDGSLVARLSDDSAANK  107 (388)
T ss_dssp             TSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSS--EEEEEC-BSCEEEEETTTCCEEEEECC------
T ss_pred             ccccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCC--EEEEEe-CCeEEEEEecccceEeeecccccccc
Confidence            34566778889999776554321 223346999999999999999  788887 89999999999999998877654332


Q ss_pred             EEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEE
Q 001163          512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKR  591 (1134)
Q Consensus       512 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~  591 (1134)
                      ....        +.                  ......+...|.+++|+|++++|++++.++    .|++||...++.+.
T Consensus       108 ~~~~--------~~------------------~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg----~v~i~~~~~~~~~~  157 (388)
T d1erja_         108 DPEN--------LN------------------TSSSPSSDLYIRSVCFSPDGKFLATGAEDR----LIRIWDIENRKIVM  157 (388)
T ss_dssp             -------------------------------------CCCCBEEEEEECTTSSEEEEEETTS----CEEEEETTTTEEEE
T ss_pred             cccc--------cc------------------cccccCCCCCEEEEEECCCCCcceeccccc----cccccccccccccc
Confidence            1110        00                  011123556799999999999999998754    59999999999999


Q ss_pred             EecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcC-CCcEEEEEECCCcEEEEE
Q 001163          592 TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK-EGILLAVSTNDNGIKILA  670 (1134)
Q Consensus       592 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~~~~~dg~i~iw~  670 (1134)
                      .+.+|.. .|.++++++++..+++++.++.+++||..+.........+  . ...++.+.+ ++.+|++++.||.|++|+
T Consensus       158 ~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~l~~~~~d~~i~i~~  233 (388)
T d1erja_         158 ILQGHEQ-DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE--D-GVTTVAVSPGDGKYIAAGSLDRAVRVWD  233 (388)
T ss_dssp             EECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS--S-CEEEEEECSTTCCEEEEEETTSCEEEEE
T ss_pred             ccccccc-cccccccccccccccccccceeeeeeeccccccccccccc--c-ccccccccCCCCCeEEEEcCCCeEEEee
Confidence            9998887 8999999999999999999999999999998887777654  2 344555555 889999999999999999


Q ss_pred             ccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccc
Q 001163          671 NADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEK  750 (1134)
Q Consensus       671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  750 (1134)
                      ..++. ....+....                                                                 
T Consensus       234 ~~~~~-~~~~~~~~~-----------------------------------------------------------------  247 (388)
T d1erja_         234 SETGF-LVERLDSEN-----------------------------------------------------------------  247 (388)
T ss_dssp             TTTCC-EEEEEC--------------------------------------------------------------------
T ss_pred             cccCc-cceeecccc-----------------------------------------------------------------
Confidence            98772 222221100                                                                 


Q ss_pred             cceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCC
Q 001163          751 SRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSG  830 (1134)
Q Consensus       751 i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~  830 (1134)
                                         ....+|...|.+++|+|+++.|++++.||.+++|++...                      
T Consensus       248 -------------------~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~----------------------  286 (388)
T d1erja_         248 -------------------ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA----------------------  286 (388)
T ss_dssp             ----------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------------------
T ss_pred             -------------------ccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCC----------------------
Confidence                               000126677888888888888888888888888865421                      


Q ss_pred             cccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 001163          831 ILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQ  910 (1134)
Q Consensus       831 ~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~  910 (1134)
                      ....             ...                   ....+........|...|.+++|+| ++++|++|+.||.|+
T Consensus       287 ~~~~-------------~~~-------------------~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~  333 (388)
T d1erja_         287 NNKS-------------DSK-------------------TPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVL  333 (388)
T ss_dssp             --------------------------------------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEE
T ss_pred             cccc-------------ccc-------------------cccccceeeecccccceEEEEEECC-CCCEEEEEeCCCEEE
Confidence            0000             000                   0011233445556888999999999 899999999999999


Q ss_pred             EEEcccceEEEeccCccCceEEEEE------eeCCCEEEEEeCCCcEEEEECC
Q 001163          911 IYNVRVDEVKTKLKGHQKRITGLAF------SNTLNVLVSSGADSQLCVWSTD  957 (1134)
Q Consensus       911 iwd~~~~~~~~~l~~h~~~V~~l~~------s~d~~~l~s~s~Dg~i~iwd~~  957 (1134)
                      +||+.+++++.++++|.+.|+++++      +|++.+||||+.||+|+||+++
T Consensus       334 vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         334 FWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            9999999999999999999999976      5689999999999999999975

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.6e-32  Score=304.54  Aligned_cols=347  Identities=14%  Similarity=0.216  Sum_probs=258.8

Q ss_pred             EEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEE
Q 001163          590 KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKIL  669 (1134)
Q Consensus       590 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw  669 (1134)
                      ..++++|....+.+++  +++++|++|+.||+|++||+.+++++..+..|  ...|.+++|+|+ .+|++++.||.|++|
T Consensus         5 ~~tL~GH~~~vitc~~--~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H--~~~V~~l~~s~~-~~l~s~s~D~~i~iw   79 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQ--FEDNYVITGADDKMIRVYDSINKKFLLQLSGH--DGGVWALKYAHG-GILVSGSTDRTVRVW   79 (355)
T ss_dssp             EEEEECCSSSCEEEEE--EETTEEEEEETTTEEEEEETTTTEEEEEEECC--SSCEEEEEEETT-TEEEEEETTCCEEEE
T ss_pred             cEEECCcCCCcEEEEE--ECCCEEEEEeCCCeEEEEECCCCcEEEEEECC--CCCEEEEEEcCC-CEEEEEecccccccc
Confidence            4568899874556555  46789999999999999999999999999865  678999999986 589999999999999


Q ss_pred             EccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccccccccc
Q 001163          670 ANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVE  749 (1134)
Q Consensus       670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  749 (1134)
                      +..... ........                                                                 
T Consensus        80 ~~~~~~-~~~~~~~~-----------------------------------------------------------------   93 (355)
T d1nexb2          80 DIKKGC-CTHVFEGH-----------------------------------------------------------------   93 (355)
T ss_dssp             ETTTTE-EEEEECCC-----------------------------------------------------------------
T ss_pred             cccccc-cccccccc-----------------------------------------------------------------
Confidence            987762 22211110                                                                 


Q ss_pred             ccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCC
Q 001163          750 KSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPS  829 (1134)
Q Consensus       750 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~  829 (1134)
                                              .+........+.+++..+++++.|+.+++|++...................+....
T Consensus        94 ------------------------~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (355)
T d1nexb2          94 ------------------------NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE  149 (355)
T ss_dssp             ------------------------SSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTT
T ss_pred             ------------------------cccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceecccc
Confidence                                    02334456678899999999999999999998764322111110000000000000


Q ss_pred             CcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 001163          830 GILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSS  908 (1134)
Q Consensus       830 ~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~  908 (1134)
                      .........  .|...+  ..+.+++++++++. |+.|++||+.+++.+....++...+.++.|+| ++.++++++.|+.
T Consensus       150 ~~~~~~~~~--~~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~  224 (355)
T d1nexb2         150 NPYFVGVLR--GHMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTT  224 (355)
T ss_dssp             CTTEEEEEE--CCSSCE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSC
T ss_pred             ccceeeeee--eccccc--cccccccceeeeecccceeeeeecccccceeeeeccccccccccccc-cceeeecccccce
Confidence            000000000  133333  34567888999988 89999999999999999999999999999999 8999999999999


Q ss_pred             EEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCC
Q 001163          909 IQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLD  988 (1134)
Q Consensus       909 i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d  988 (1134)
                      |++||+.++..+..+.+|...|.+++|+  +++|++++.||+|++||+.+...    .+......     ......|+++
T Consensus       225 i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~-----~~~~~~~~~~  293 (355)
T d1nexb2         225 IRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSR----KFSYHHTN-----LSAITTFYVS  293 (355)
T ss_dssp             EEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCE----EEEEECTT-----CCCCCEEEEC
T ss_pred             EEeeeccccccccccccccccccccccc--cceeeeeecccccccccccccce----ecccccCC-----ceEEEEEcCC
Confidence            9999999999999999999999999986  57999999999999999987542    22222211     1233467889


Q ss_pred             CCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeec
Q 001163          989 QTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTA 1049 (1134)
Q Consensus       989 g~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~ 1049 (1134)
                      +.+++++.|++|+|||+++++++.... .+|...|.+++|+|+ .++++++.||+++||.+
T Consensus       294 ~~~l~~g~d~~i~vwd~~tg~~~~~~~-~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         294 DNILVSGSENQFNIYNLRSGKLVHANI-LKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             SSEEEEEETTEEEEEETTTCCBCCSCT-TTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             CCEEEEEeCCEEEEEECCCCCEEEEEe-cCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence            999988999999999999999886543 378999999999987 57888999999777654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1e-31  Score=299.23  Aligned_cols=286  Identities=16%  Similarity=0.231  Sum_probs=250.7

Q ss_pred             cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163          414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD  493 (1134)
Q Consensus       414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd  493 (1134)
                      |.||.+.|++++|+|++++||+|+.||+|+|||+.+++.+.   .+.+|...|.+++|+|++.  ++++|+.|+.+++|+
T Consensus        51 L~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~v~~~~~~~--~l~~~~~d~~i~~~~  125 (340)
T d1tbga_          51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN  125 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE---EEECSCSCEEEEEECTTSS--EEEEEETTCCEEEEE
T ss_pred             ECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEE---EEecccccEEeeEeeccce--eeeeecccceeeccc
Confidence            78999999999999999999999999999999999998665   6788999999999999999  899999999999999


Q ss_pred             CCCC----ceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEE
Q 001163          494 AVTG----TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSC  569 (1134)
Q Consensus       494 ~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  569 (1134)
                      ....    .....+.+|............   ..+.....|.....|.................+....+.+.+..++++
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (340)
T d1tbga_         126 LKTREGNVRVSRELAGHTGYLSCCRFLDD---NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG  202 (340)
T ss_dssp             SSSSCSCCCEEEEECCCSSCEEEEEEEET---TEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             ccccccccccceecccccccccccccccc---cccccccccccccccccccccccccccccceeEeeeccccccceeEEe
Confidence            7654    345667788887776654332   578888889999999888777766777777789999999999999998


Q ss_pred             ecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEE
Q 001163          570 GTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIR  649 (1134)
Q Consensus       570 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  649 (1134)
                      +.+    +.|++||+++++.+..+.+|.. .|.+++|+|++++|++++.||.|++||+.....+..+....+...+.+++
T Consensus       203 ~~d----~~v~i~d~~~~~~~~~~~~h~~-~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~  277 (340)
T d1tbga_         203 ACD----ASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS  277 (340)
T ss_dssp             ETT----TEEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred             ecC----ceEEEEECCCCcEEEEEeCCCC-CeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEE
Confidence            764    4699999999999999999877 89999999999999999999999999999999888887766677899999


Q ss_pred             EcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCC
Q 001163          650 FNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGM  729 (1134)
Q Consensus       650 ~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  729 (1134)
                      |+|++++|++|+.||.|++||+.++ ..+..+.                                               
T Consensus       278 ~s~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~-----------------------------------------------  309 (340)
T d1tbga_         278 FSKSGRLLLAGYDDFNCNVWDALKA-DRAGVLA-----------------------------------------------  309 (340)
T ss_dssp             ECSSSCEEEEEETTSCEEEEETTTC-CEEEEEC-----------------------------------------------
T ss_pred             ECCCCCEEEEEECCCEEEEEECCCC-cEEEEEc-----------------------------------------------
Confidence            9999999999999999999998876 3333332                                               


Q ss_pred             CCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeee
Q 001163          730 SNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWK  804 (1134)
Q Consensus       730 ~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~  804 (1134)
                                                                  +|...|.+++|+|++++|++++.||.|+|||
T Consensus       310 --------------------------------------------~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         310 --------------------------------------------GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             --------------------------------------------CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             --------------------------------------------CCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence                                                        2677899999999999999999999999995

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1e-31  Score=299.09  Aligned_cols=292  Identities=18%  Similarity=0.290  Sum_probs=253.0

Q ss_pred             eeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEE
Q 001163          348 TVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW  426 (1134)
Q Consensus       348 ~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  426 (1134)
                      +..++|. |.+.|++++|+|+++ +||+|+.||+|+|||+.+++.+..                   +.+|...|.+++|
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~-~l~sgs~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~v~~  105 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCAY  105 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSCSCEEEEEE
T ss_pred             eeeEEECCCCCCEEEEEECCCCC-EEEEEECCCceeeeecccceeEEE-------------------EecccccEEeeEe
Confidence            3456675 999999999999999 568999999999999999987654                   5679999999999


Q ss_pred             cCCCCEEEEEeCCCEEEEEEccCCcee-eeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecC
Q 001163          427 SPDGTLFGVAYSKHIVHLYTYHGGDEL-RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG  505 (1134)
Q Consensus       427 spd~~~las~s~dg~v~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  505 (1134)
                      +|+++++++|+.|+.+++|+....... .....+.+|...........+.   .+.....|.....|+............
T Consensus       106 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (340)
T d1tbga_         106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTG  182 (340)
T ss_dssp             CTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT---EEEEEETTTEEEEEETTTTEEEEEEEC
T ss_pred             eccceeeeeecccceeecccccccccccccceeccccccccccccccccc---ccccccccccccccccccccccccccc
Confidence            999999999999999999998765432 2233577888877777766554   588899999999999988888888888


Q ss_pred             CCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC
Q 001163          506 HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES  585 (1134)
Q Consensus       506 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~  585 (1134)
                      +...+....+.+.  +.++++++.|+.|++||+++......+..|...|.+++|+|++++|++++.++    .|++||+.
T Consensus       183 ~~~~~~~~~~~~~--~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~----~i~~~~~~  256 (340)
T d1tbga_         183 HTGDVMSLSLAPD--TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA----TCRLFDLR  256 (340)
T ss_dssp             CSSCEEEEEECTT--SSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS----CEEEEETT
T ss_pred             cceeEeeeccccc--cceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCC----eEEEEeec
Confidence            8888988877544  47999999999999999999888888888999999999999999999998654    59999999


Q ss_pred             CCeeEEEecCC-CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCC
Q 001163          586 EGAVKRTYHGL-GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN  664 (1134)
Q Consensus       586 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg  664 (1134)
                      .......+... ....+..++|+|++++|++|+.||.|++||+.+++++..+..|  ...|.+++|+|++.+|++|+.||
T Consensus       257 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H--~~~V~~l~~s~d~~~l~s~s~Dg  334 (340)
T d1tbga_         257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH--DNRVSCLGVTDDGMAVATGSWDS  334 (340)
T ss_dssp             TTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSCEEEEETTS
T ss_pred             ccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEeCCCCEEEEEccCC
Confidence            99888776433 3346899999999999999999999999999999999999865  66899999999999999999999


Q ss_pred             cEEEEE
Q 001163          665 GIKILA  670 (1134)
Q Consensus       665 ~i~iw~  670 (1134)
                      .|++||
T Consensus       335 ~v~iWd  340 (340)
T d1tbga_         335 FLKIWN  340 (340)
T ss_dssp             CEEEEC
T ss_pred             EEEEeC
Confidence            999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.4e-32  Score=310.28  Aligned_cols=290  Identities=14%  Similarity=0.105  Sum_probs=231.0

Q ss_pred             CCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEE
Q 001163          356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV  435 (1134)
Q Consensus       356 ~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las  435 (1134)
                      .++|+|++|||||+ ++|+|+.||.|+|||+.+++.....                 .+.+|.++|.+++|+|++++|++
T Consensus         7 ~~pIt~~~~s~dg~-~la~~~~~~~i~iw~~~~~~~~~~~-----------------~l~gH~~~V~~l~fsp~~~~l~s   68 (371)
T d1k8kc_           7 VEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVH-----------------ELKEHNGQVTGVDWAPDSNRIVT   68 (371)
T ss_dssp             SSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEE-----------------EEECCSSCEEEEEEETTTTEEEE
T ss_pred             CCCeEEEEECCCCC-EEEEEeCCCEEEEEECCCCCEEEEE-----------------EecCCCCCEEEEEECCCCCEEEE
Confidence            36799999999998 5689999999999999877643321                 26789999999999999999999


Q ss_pred             EeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCce----eEEecCCCcCEE
Q 001163          436 AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK----QYIFEGHESPVY  511 (1134)
Q Consensus       436 ~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~----~~~~~~h~~~v~  511 (1134)
                      |+.|++|+|||+.++... ....+.+|...|++++|+|+++  .|++++.|++|++|++.....    ......|...|.
T Consensus        69 ~s~D~~i~vWd~~~~~~~-~~~~~~~~~~~v~~i~~~p~~~--~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~  145 (371)
T d1k8kc_          69 CGTDRNAYVWTLKGRTWK-PTLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL  145 (371)
T ss_dssp             EETTSCEEEEEEETTEEE-EEEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred             EECCCeEEEEeecccccc-cccccccccccccccccccccc--cceeecccCcceeeeeecccccccccccccccccccc
Confidence            999999999999987643 3335778999999999999999  899999999999999876653    334567999999


Q ss_pred             EEeccccCCccEEEEecCCCcEEEEecCCCC------------------ceeeecCCCCCeeEEEECcCCCEEEEEecCC
Q 001163          512 SICPHHKENIQFIFSTATDGKIKAWLYDNLG------------------SRVDYDAPGHSSTMMAYSADGARLFSCGTNK  573 (1134)
Q Consensus       512 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~  573 (1134)
                      +++|+|  ++.+|++|+.|++|++|+.....                  .......+...|.+++|+|++++|++++.|+
T Consensus       146 ~v~~~p--~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~  223 (371)
T d1k8kc_         146 SLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS  223 (371)
T ss_dssp             EEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT
T ss_pred             cccccc--cccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCC
Confidence            999965  55899999999999999976432                  1223345566899999999999999998643


Q ss_pred             CCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEe----------------
Q 001163          574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID----------------  637 (1134)
Q Consensus       574 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------------  637 (1134)
                          .|.+||+.+++.+..+..|.. +|.+++|+|++.+|++ +.|+.+++|..........+.                
T Consensus       224 ----~i~iwd~~~~~~~~~~~~~~~-~v~s~~fs~d~~~la~-g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (371)
T d1k8kc_         224 ----TVCLADADKKMAVATLASETL-PLLAVTFITESSLVAA-GHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTA  297 (371)
T ss_dssp             ----EEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEE-ETTSSCEEEEEETTTTEEEECCCCCCC--------CH
T ss_pred             ----cceEEeeecccceeeeecccc-cceeeeecCCCCEEEE-EcCCceEEEEeeCCCceEEEeeeecCccccccccccc
Confidence                599999999999999998876 8999999999876665 457776666543321111000                


Q ss_pred             -----------------------cCCCCCCcceEEEcCCC----cEEEEEECCCcEEEEEccCC
Q 001163          638 -----------------------ADGGLQASPCIRFNKEG----ILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       638 -----------------------~~~~~~~v~~v~~sp~~----~~l~~~~~dg~i~iw~~~~~  674 (1134)
                                             ...|...|+++++.+.+    ..+++++.||.|++|++++.
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~  361 (371)
T d1k8kc_         298 RERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL  361 (371)
T ss_dssp             HHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred             eeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcC
Confidence                                   00145678889987744    46899999999999998764

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.7e-31  Score=301.24  Aligned_cols=245  Identities=14%  Similarity=0.144  Sum_probs=205.9

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCC
Q 001163          417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT  496 (1134)
Q Consensus       417 h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~  496 (1134)
                      +..+|+|++|||||++||+|+.||.|+|||+.+++. .....+.+|.++|++++|+|+++  +|++|+.|++|+|||+.+
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~-~~~~~l~gH~~~V~~l~fsp~~~--~l~s~s~D~~i~vWd~~~   82 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-VQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWTLKG   82 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-EEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEEEET
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCE-EEEEEecCCCCCEEEEEECCCCC--EEEEEECCCeEEEEeecc
Confidence            346899999999999999999999999999998763 33446899999999999999999  899999999999999987


Q ss_pred             Cce--eEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCcee----eecCCCCCeeEEEECcCCCEEEEEe
Q 001163          497 GTK--QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV----DYDAPGHSSTMMAYSADGARLFSCG  570 (1134)
Q Consensus       497 ~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~  570 (1134)
                      +..  ...+.+|...|.+++|+++  ++.|++++.|+.|++|+++......    ....+...|.+++|+|++++|++++
T Consensus        83 ~~~~~~~~~~~~~~~v~~i~~~p~--~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s  160 (371)
T d1k8kc_          83 RTWKPTLVILRINRAARCVRWAPN--EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS  160 (371)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTT--SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred             cccccccccccccccccccccccc--cccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccc
Confidence            764  4456789999999999654  5899999999999999988765432    2345667899999999999999998


Q ss_pred             cCCCCCeEEEEEeCCCC------------------eeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce
Q 001163          571 TNKEGESYLVEWNESEG------------------AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL  632 (1134)
Q Consensus       571 ~~~~~~~~i~~wd~~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  632 (1134)
                      .|+    .+++||....                  ........|.. .+.+++|+|++++|++++.|+.|++||+.+++.
T Consensus       161 ~D~----~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~  235 (371)
T d1k8kc_         161 CDF----KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGSRVAWVSHDSTVCLADADKKMA  235 (371)
T ss_dssp             TTS----CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE
T ss_pred             cCc----EEEEEeeccCccccccccccccccccceeeeeeccCccC-cEEEEEeecccccccccccCCcceEEeeecccc
Confidence            754    5999997643                  34455556655 799999999999999999999999999999999


Q ss_pred             eEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163          633 LASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       633 ~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      +..+..+  ..+|.+++|+|++.+|++| .|+.+++|.....
T Consensus       236 ~~~~~~~--~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~  274 (371)
T d1k8kc_         236 VATLASE--TLPLLAVTFITESSLVAAG-HDCFPVLFTYDSA  274 (371)
T ss_dssp             EEEEECS--SCCEEEEEEEETTEEEEEE-TTSSCEEEEEETT
T ss_pred             eeeeecc--cccceeeeecCCCCEEEEE-cCCceEEEEeeCC
Confidence            9988865  5689999999999888765 4777778776554

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.2e-31  Score=292.83  Aligned_cols=290  Identities=11%  Similarity=0.131  Sum_probs=224.0

Q ss_pred             eeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEE
Q 001163          348 TVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW  426 (1134)
Q Consensus       348 ~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  426 (1134)
                      .+.+++. |.+.|++++|||||+ +|++|+.||+|++||+.+++.+..                  +..+|...|++++|
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~-~l~s~s~Dg~v~vWd~~~~~~~~~------------------~~~~h~~~v~~v~~   63 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRV------------------FPDVHATMITGIKT   63 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEC------------------SSCSCSSCEEEEEE
T ss_pred             ccceEcCCCCCCcEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEE------------------EcCCCCCcEEEEEe
Confidence            3455665 999999999999999 568999999999999999876653                  13579999999999


Q ss_pred             cCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCC
Q 001163          427 SPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH  506 (1134)
Q Consensus       427 spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h  506 (1134)
                      +|+|+++ +++.|+.+++|+...............|...+.+++|+++++  +++ ++.++.+++|+..  +.....  .
T Consensus        64 ~~~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~~~-~~~~~~i~~~~~~--~~~~~~--~  135 (299)
T d1nr0a2          64 TSKGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD--IAV-AACYKHIAIYSHG--KLTEVP--I  135 (299)
T ss_dssp             CTTSCEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS--CEE-EEESSEEEEEETT--EEEEEE--C
T ss_pred             eccceee-cccceeeEEEeccCCccccccccccccccccccccccccccc--ccc-ccccccccccccc--cccccc--c
Confidence            9999755 566789999999876543222223456888899999999998  444 4456789999943  333333  3


Q ss_pred             CcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCcee-eecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC
Q 001163          507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV-DYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES  585 (1134)
Q Consensus       507 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~  585 (1134)
                      ...+.+++|++  ++.++++++.|+.|++||++...... ....+...|.+++|+|+++++++++.++    .|++||+.
T Consensus       136 ~~~~~~~~~s~--~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~i~~~~~~  209 (299)
T d1nr0a2         136 SYNSSCVALSN--DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR----KVIPYSVA  209 (299)
T ss_dssp             SSCEEEEEECT--TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTS----CEEEEEGG
T ss_pred             ccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccc----cccccccc
Confidence            34567788765  55899999999999999998765433 3445677899999999999999987654    49999998


Q ss_pred             CCeeEE---EecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCC-CCCcceEEEcCCCcEEEEEE
Q 001163          586 EGAVKR---TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGG-LQASPCIRFNKEGILLAVST  661 (1134)
Q Consensus       586 ~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~sp~~~~l~~~~  661 (1134)
                      ++....   .+.+|.. .|.+++|+|++++|++|+.||.|++||+.++.....+....+ ...+.++.| +++.+|++++
T Consensus       210 ~~~~~~~~~~~~~h~~-~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s  287 (299)
T d1nr0a2         210 NNFELAHTNSWTFHTA-KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAG  287 (299)
T ss_dssp             GTTEESCCCCCCCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEE
T ss_pred             cccccccccccccccc-ccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEe
Confidence            876554   3444554 899999999999999999999999999998765554443333 334555544 5678999999


Q ss_pred             CCCcEEEEEcc
Q 001163          662 NDNGIKILANA  672 (1134)
Q Consensus       662 ~dg~i~iw~~~  672 (1134)
                      .||.|++||+.
T Consensus       288 ~D~~i~iWdl~  298 (299)
T d1nr0a2         288 QDSNIKFWNVP  298 (299)
T ss_dssp             TTSCEEEEECC
T ss_pred             CCCEEEEEecc
Confidence            99999999974

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.2e-31  Score=288.50  Aligned_cols=294  Identities=15%  Similarity=0.137  Sum_probs=226.8

Q ss_pred             CceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccc
Q 001163          630 VNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSAN  709 (1134)
Q Consensus       630 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  709 (1134)
                      |+..+.+.+  |...|++++|+|++++|++|+.||+|++||+.++. ..+.+.                           
T Consensus         2 g~~~~~~~G--H~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~-~~~~~~---------------------------   51 (299)
T d1nr0a2           2 GSIDQVRYG--HNKAITALSSSADGKTLFSADAEGHINSWDISTGI-SNRVFP---------------------------   51 (299)
T ss_dssp             TEEEEEECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEECSS---------------------------
T ss_pred             CccceEcCC--CCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCc-EEEEEc---------------------------
Confidence            455666664  47899999999999999999999999999998762 222111                           


Q ss_pred             cccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCc
Q 001163          710 ANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGL  789 (1134)
Q Consensus       710 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~  789 (1134)
                                                                                     ..|...|.+++|+|+|+
T Consensus        52 ---------------------------------------------------------------~~h~~~v~~v~~~~~g~   68 (299)
T d1nr0a2          52 ---------------------------------------------------------------DVHATMITGIKTTSKGD   68 (299)
T ss_dssp             ---------------------------------------------------------------CSCSSCEEEEEECTTSC
T ss_pred             ---------------------------------------------------------------CCCCCcEEEEEeeccce
Confidence                                                                           12678899999999997


Q ss_pred             eeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEE
Q 001163          790 AILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLF  869 (1134)
Q Consensus       790 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lw  869 (1134)
                       +++++.|+.+++|+.......                 .....   .  ..+...+.+++++++|++++++.++.+++|
T Consensus        69 -~~~~~~d~~v~~~~~~~~~~~-----------------~~~~~---~--~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~  125 (299)
T d1nr0a2          69 -LFTVSWDDHLKVVPAGGSGVD-----------------SSKAV---A--NKLSSQPLGLAVSADGDIAVAACYKHIAIY  125 (299)
T ss_dssp             -EEEEETTTEEEEECSSSSSSC-----------------TTSCC---E--EECSSCEEEEEECTTSSCEEEEESSEEEEE
T ss_pred             -eecccceeeEEEeccCCcccc-----------------ccccc---c--cccccccccccccccccccccccccccccc
Confidence             566777899999986532110                 00000   0  126778899999999999999999999999


Q ss_pred             EccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEE-eccCccCceEEEEEeeCCCEEEEEeCC
Q 001163          870 NMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKT-KLKGHQKRITGLAFSNTLNVLVSSGAD  948 (1134)
Q Consensus       870 d~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~-~l~~h~~~V~~l~~s~d~~~l~s~s~D  948 (1134)
                      +...  .....  ....+.+++|+| ++++|++|+.||.|++||+.+++... ....|...|++++|+|++++|++++.|
T Consensus       126 ~~~~--~~~~~--~~~~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  200 (299)
T d1nr0a2         126 SHGK--LTEVP--ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQS  200 (299)
T ss_dssp             ETTE--EEEEE--CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccc--ccccc--cccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9543  33332  345688999999 89999999999999999999887553 445699999999999999999999999


Q ss_pred             CcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-EeeceEEEEeCCCcccceeeccCCC-ccCEEEE
Q 001163          949 SQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLECLKQFVPREA-SGPITHA 1026 (1134)
Q Consensus       949 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h-~~~v~~~ 1026 (1134)
                      +.|++||+.++....  ......+|.   ..|.+++|+|++++|++ +.|+.|++||+.++..........| ...|.++
T Consensus       201 ~~i~~~~~~~~~~~~--~~~~~~~h~---~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  275 (299)
T d1nr0a2         201 RKVIPYSVANNFELA--HTNSWTFHT---AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSV  275 (299)
T ss_dssp             SCEEEEEGGGTTEES--CCCCCCCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEE
T ss_pred             ccccccccccccccc--ccccccccc---cccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEE
Confidence            999999998754221  122233343   57999999999999999 5789999999998876555444444 4556666


Q ss_pred             EEccCCCEEEEEecCCcEEEeecC
Q 001163         1027 TYSCDSQSIYVAFEEGSVGVLTAS 1050 (1134)
Q Consensus      1027 ~~s~dg~~l~s~s~Dg~i~vwd~~ 1050 (1134)
                      + ++++++|++++.|++|++||+.
T Consensus       276 ~-~~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         276 I-WLNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             E-EEETTEEEEEETTSCEEEEECC
T ss_pred             E-ECCCCEEEEEeCCCEEEEEecc
Confidence            4 5678899999999999999984

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-30  Score=288.93  Aligned_cols=320  Identities=20%  Similarity=0.316  Sum_probs=245.1

Q ss_pred             eeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEE
Q 001163          455 NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIK  534 (1134)
Q Consensus       455 ~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~  534 (1134)
                      ....|+||.+.|.+ +++++|+  +|+||+.|++|+|||+.++++++++.+|...|.+++|++    .+|++++.|+.++
T Consensus         8 ~~~~l~GH~~~V~s-~~~~~g~--~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~----~~l~s~s~D~~~~   80 (342)
T d2ovrb2           8 SPKVLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTLK   80 (342)
T ss_dssp             CCEEEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEETTSCEE
T ss_pred             cCEEECCcCCceEE-EEEECCC--EEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC----Cccccceeccccc
Confidence            33478999999865 4667788  899999999999999999999999999999999999853    4899999999999


Q ss_pred             EEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEE
Q 001163          535 AWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFL  614 (1134)
Q Consensus       535 vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  614 (1134)
                      +|+................+.....  ....+..+..    +..+.+|+..+++....+.....   ....+.+....++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----d~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  151 (342)
T d2ovrb2          81 VWNAETGECIHTLYGHTSTVRCMHL--HEKRVVSGSR----DATLRVWDIETGQCLHVLMGHVA---AVRCVQYDGRRVV  151 (342)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEET----TSEEEEEESSSCCEEEEEECCSS---CEEEEEECSSCEE
T ss_pred             ccccccccceecccccceeEeeeec--cccccccccc----ceeEEEeecccccceeeeecccc---cceeeccccceee
Confidence            9998876665555554445544443  3345555544    34589999998888777765543   2233445667888


Q ss_pred             EEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchh
Q 001163          615 AAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASA  694 (1134)
Q Consensus       615 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  694 (1134)
                      +++.|+.|++||....+.+..+..+  .  .....+++++.++++++.||.|++|++..+ ..+..+.            
T Consensus       152 ~~~~d~~i~~~d~~~~~~~~~~~~~--~--~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~-~~~~~~~------------  214 (342)
T d2ovrb2         152 SGAYDFMVKVWDPETETCLHTLQGH--T--NRVYSLQFDGIHVVSGSLDTSIRVWDVETG-NCIHTLT------------  214 (342)
T ss_dssp             EEETTSCEEEEEGGGTEEEEEECCC--S--SCEEEEEECSSEEEEEETTSCEEEEETTTC-CEEEEEC------------
T ss_pred             eecCCCeEEEeecccceeeEEEcCc--c--cccccccCCCCEEEEEeCCCeEEEeecccc-eeeeEec------------
Confidence            8999999999999988888877654  2  244556667889999999999999987655 1111110            


Q ss_pred             hhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCcc
Q 001163          695 AIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNL  774 (1134)
Q Consensus       695 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~  774 (1134)
                                                                                                      
T Consensus       215 --------------------------------------------------------------------------------  214 (342)
T d2ovrb2         215 --------------------------------------------------------------------------------  214 (342)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC
Q 001163          775 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN  854 (1134)
Q Consensus       775 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d  854 (1134)
                                                                                        +|...+.+++++  
T Consensus       215 ------------------------------------------------------------------~~~~~v~~~~~~--  226 (342)
T d2ovrb2         215 ------------------------------------------------------------------GHQSLTSGMELK--  226 (342)
T ss_dssp             ------------------------------------------------------------------CCCSCEEEEEEE--
T ss_pred             ------------------------------------------------------------------ccccceeEEecC--
Confidence                                                                              144455555554  


Q ss_pred             CCeEEEee-CCeEEEEEccCCeEEEEecC---CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEecc-----C
Q 001163          855 DSYVMSAS-GGKISLFNMMTFKTMTTFMP---PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK-----G  925 (1134)
Q Consensus       855 g~~la~~s-dg~i~lwd~~~~~~~~~~~~---~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~-----~  925 (1134)
                      +++|++++ |+.|++||+...+....+..   |...+.++.+++   .++++|+.||.|+|||+.+++.+..+.     +
T Consensus       227 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~  303 (342)
T d2ovrb2         227 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGG  303 (342)
T ss_dssp             TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGG
T ss_pred             CCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCC---CeeEEEcCCCEEEEEECCCCCEEEEEecccCCC
Confidence            45777777 78888888888877777764   445677777754   699999999999999999999887763     5


Q ss_pred             ccCceEEEEEeeCCCEEEEEeCCCc----EEEEECCC
Q 001163          926 HQKRITGLAFSNTLNVLVSSGADSQ----LCVWSTDG  958 (1134)
Q Consensus       926 h~~~V~~l~~s~d~~~l~s~s~Dg~----i~iwd~~~  958 (1134)
                      |.+.|++++|+|++.+|++|+.||+    |++||++.
T Consensus       304 ~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         304 SGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             GTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            8889999999999999999999986    99999875

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=5e-29  Score=277.03  Aligned_cols=325  Identities=16%  Similarity=0.254  Sum_probs=254.7

Q ss_pred             EEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC
Q 001163          350 VMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP  428 (1134)
Q Consensus       350 ~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  428 (1134)
                      .+.|. |.+.|.+ +++++|+ +||+|+.||+|+|||+.+++.+..                   +.+|.+.|.+++|+|
T Consensus         9 ~~~l~GH~~~V~s-~~~~~g~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------~~~h~~~V~~v~~~~   67 (342)
T d2ovrb2           9 PKVLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQMRD   67 (342)
T ss_dssp             CEEEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEEET
T ss_pred             CEEECCcCCceEE-EEEECCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------EeCCCCCEEEEEeCC
Confidence            34454 9988865 4777888 568999999999999999987764                   678999999999987


Q ss_pred             CCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCc
Q 001163          429 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES  508 (1134)
Q Consensus       429 d~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~  508 (1134)
                      +  +|++|+.|+.+++|+........   ....+...+....+.  ..  .++.+..|+.+.+|+..+++....+..+..
T Consensus        68 ~--~l~s~s~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~--~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~  138 (342)
T d2ovrb2          68 N--IIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHVA  138 (342)
T ss_dssp             T--EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCSS
T ss_pred             C--ccccceeccccccccccccccee---cccccceeEeeeecc--cc--cccccccceeEEEeecccccceeeeecccc
Confidence            5  99999999999999998876443   344555666665554  34  578899999999999999998888776655


Q ss_pred             CEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCe
Q 001163          509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA  588 (1134)
Q Consensus       509 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~  588 (1134)
                      .......  .  ...+++++.|+.|++||.........+..+...+  ..+++++.++++++.++    .|++||++.++
T Consensus       139 ~~~~~~~--~--~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~l~s~~~dg----~i~~~d~~~~~  208 (342)
T d2ovrb2         139 AVRCVQY--D--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV--YSLQFDGIHVVSGSLDT----SIRVWDVETGN  208 (342)
T ss_dssp             CEEEEEE--C--SSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCE--EEEEECSSEEEEEETTS----CEEEEETTTCC
T ss_pred             cceeecc--c--cceeeeecCCCeEEEeecccceeeEEEcCccccc--ccccCCCCEEEEEeCCC----eEEEeecccce
Confidence            5544332  2  2678999999999999998877777776665544  44556789999998755    49999999999


Q ss_pred             eEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecC-CCCCCcceEEEcCCCcEEEEEECCCcEE
Q 001163          589 VKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD-GGLQASPCIRFNKEGILLAVSTNDNGIK  667 (1134)
Q Consensus       589 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~l~~~~~dg~i~  667 (1134)
                      .+..+.+|.. .+.+++++  +++|++++.||.|++||....+....+..+ .+...+.++.+  +++++++++.||.|+
T Consensus       209 ~~~~~~~~~~-~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~  283 (342)
T d2ovrb2         209 CIHTLTGHQS-LTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVK  283 (342)
T ss_dssp             EEEEECCCCS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEE
T ss_pred             eeeEeccccc-ceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEE
Confidence            9999998876 67776665  569999999999999999999888877653 33444455555  567999999999999


Q ss_pred             EEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccccccc
Q 001163          668 ILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEA  747 (1134)
Q Consensus       668 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  747 (1134)
                      +||+.++ +.++.+...                                                               
T Consensus       284 iwd~~tg-~~i~~~~~~---------------------------------------------------------------  299 (342)
T d2ovrb2         284 LWDLKTG-EFIRNLVTL---------------------------------------------------------------  299 (342)
T ss_dssp             EEETTTC-CEEEEEEEC---------------------------------------------------------------
T ss_pred             EEECCCC-CEEEEEecc---------------------------------------------------------------
Confidence            9999988 444443210                                                               


Q ss_pred             ccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCe----EEeeecC
Q 001163          748 VEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAV----HKLWKWP  806 (1134)
Q Consensus       748 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~----i~vw~~~  806 (1134)
                                             ...+|...|.+++|+|++..+++++.||+    +++||++
T Consensus       300 -----------------------~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         300 -----------------------ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             -----------------------TTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             -----------------------cCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence                                   00136778999999999999999999885    8999876

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=2.6e-30  Score=285.36  Aligned_cols=291  Identities=13%  Similarity=0.184  Sum_probs=223.7

Q ss_pred             CCeeEEEEcCCCCeEEEEEeCC-CcEEEEecCCccceeeeceeeeeccccCccccccccccC-CCCEEEEEEcC--CCCE
Q 001163          357 SAVKSMDFHPVQQILLVVGTNM-GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDY-TASVNRVMWSP--DGTL  432 (1134)
Q Consensus       357 ~~V~~v~fsp~g~~lla~gs~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~sp--d~~~  432 (1134)
                      ..+++++|+|+|+.+ |.++.+ ..|+.||....+....                 ..+.+| ...|++++|+|  +|.+
T Consensus        18 ~~~t~l~~~~~~~~l-a~~~~~~~~i~~~~~~~~~~~~~-----------------~~~~gh~~~~v~~v~fsP~~~g~~   79 (325)
T d1pgua1          18 NFTTHLSYDPTTNAI-AYPCGKSAFVRCLDDGDSKVPPV-----------------VQFTGHGSSVVTTVKFSPIKGSQY   79 (325)
T ss_dssp             TCCCCCEEETTTTEE-EEEETTEEEEEECCSSCCSSCSE-----------------EEECTTTTSCEEEEEECSSTTCCE
T ss_pred             CCeEEEEECCCCCEE-EEEeCCCEEEEEEeCCCCCccce-----------------EEEeCCCCCCEEEEEEeeCCCCCE
Confidence            356799999999966 455433 3456666544332111                 014566 57899999998  6789


Q ss_pred             EEEEeCCCEEEEEEccCCceeee-----eeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCC
Q 001163          433 FGVAYSKHIVHLYTYHGGDELRN-----HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE  507 (1134)
Q Consensus       433 las~s~dg~v~iwd~~~~~~~~~-----~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~  507 (1134)
                      ||+|+.||+|+|||+..++....     ...+..|.++|.+++|+++++.+..++++.++.+++|+..+++++..+.+|.
T Consensus        80 lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  159 (325)
T d1pgua1          80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHS  159 (325)
T ss_dssp             EEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCS
T ss_pred             EEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecc
Confidence            99999999999999987654322     1235678999999999999994323333457889999999999999999999


Q ss_pred             cCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeee---cCCCCCeeEEEECcC-CCEEEEEecCCCCCeEEEEEe
Q 001163          508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY---DAPGHSSTMMAYSAD-GARLFSCGTNKEGESYLVEWN  583 (1134)
Q Consensus       508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~i~~wd  583 (1134)
                      ..|.+++|++..+ .++++++.|+.+++||+...+.....   ..+...|.+++|+|+ +.++++++.|+    .|++||
T Consensus       160 ~~v~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~----~i~iwd  234 (325)
T d1pgua1         160 QRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR----KISCFD  234 (325)
T ss_dssp             SCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTC----CEEEEE
T ss_pred             ccccccccccccc-ceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccccccc----ceeeee
Confidence            9999999976543 46788999999999998765544443   344557999999997 57888887654    499999


Q ss_pred             CCCCeeEEEecCCCCCceEEEEEc---CCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCC-CcEEEE
Q 001163          584 ESEGAVKRTYHGLGKRSVGVVQFD---TTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE-GILLAV  659 (1134)
Q Consensus       584 ~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~-~~~l~~  659 (1134)
                      +++++.+..+.+|.. .+..+.|+   +++++|++++.|+.|+|||+.+++++..+..+.+...+..+++.+. +.+|++
T Consensus       235 ~~~~~~~~~l~~~~~-~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  313 (325)
T d1pgua1         235 GKSGEFLKYIEDDQE-PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS  313 (325)
T ss_dssp             TTTCCEEEECCBTTB-CCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEE
T ss_pred             ecccccccccccccc-ccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEE
Confidence            999999999988775 45444443   6889999999999999999999999999887766555555555543 347899


Q ss_pred             EECCCcEEEEEc
Q 001163          660 STNDNGIKILAN  671 (1134)
Q Consensus       660 ~~~dg~i~iw~~  671 (1134)
                      ++.||.|++||+
T Consensus       314 ~s~dg~i~vwdl  325 (325)
T d1pgua1         314 LSLDGTLNFYEL  325 (325)
T ss_dssp             EETTSCEEEEET
T ss_pred             EECCCEEEEEEC
Confidence            999999999985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.3e-29  Score=279.53  Aligned_cols=287  Identities=13%  Similarity=0.144  Sum_probs=219.3

Q ss_pred             ccEEEEEEecCCceeeeeccCC-eEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCC-CCCeeEEEEcC-
Q 001163          777 MRVSRLIYTNSGLAILALASNA-VHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNP-EDAVPCFALSK-  853 (1134)
Q Consensus       777 ~~i~~l~~spdg~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h-~~~v~~v~~s~-  853 (1134)
                      ..+++++|+|+|..++.++.+. .++.|+.....                     ......+.+  | ...|++++|+| 
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~---------------------~~~~~~~~g--h~~~~v~~v~fsP~   74 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSK---------------------VPPVVQFTG--HGSSVVTTVKFSPI   74 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCS---------------------SCSEEEECT--TTTSCEEEEEECSS
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCC---------------------ccceEEEeC--CCCCCEEEEEEeeC
Confidence            4567899999999998876654 34555432110                     011111222  5 56899999997 


Q ss_pred             -CCCeEEEee-CCeEEEEEccCCeE--------EEEecCCCCCeEEEEEcCCCCcEEEEEeC--CCcEEEEEcccceEEE
Q 001163          854 -NDSYVMSAS-GGKISLFNMMTFKT--------MTTFMPPPPAATFLAFHPQDNNIIAIGME--DSSIQIYNVRVDEVKT  921 (1134)
Q Consensus       854 -dg~~la~~s-dg~i~lwd~~~~~~--------~~~~~~~~~~v~~l~~sp~~~~~la~g~~--dg~i~iwd~~~~~~~~  921 (1134)
                       +|++|++++ ||+|+|||+..++.        ...+..|.++|.+++|++ +++++++++.  ++.+++|+..+++.+.
T Consensus        75 ~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~  153 (325)
T d1pgua1          75 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSLG  153 (325)
T ss_dssp             TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEEE
T ss_pred             CCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeecccccce
Confidence             678999998 99999999865432        233556889999999999 8888877654  6789999999999999


Q ss_pred             eccCccCceEEEEEeeCCCE-EEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCC-CCEEEE-Eeec
Q 001163          922 KLKGHQKRITGLAFSNTLNV-LVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLD-QTHLLA-VHET  998 (1134)
Q Consensus       922 ~l~~h~~~V~~l~~s~d~~~-l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d-g~~l~~-~~d~  998 (1134)
                      .+.+|...|++++|+|++.+ +++++.|+.+++||+...+...  ......++.   ..|.+++|+|| +.++++ +.|+
T Consensus       154 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~--~~~~~~~~~---~~v~~v~~~pd~~~~l~s~~~d~  228 (325)
T d1pgua1         154 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA--SDRTHHKQG---SFVRDVEFSPDSGEFVITVGSDR  228 (325)
T ss_dssp             ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE--EECSSSCTT---CCEEEEEECSTTCCEEEEEETTC
T ss_pred             eeeecccccccccccccccceEEEeecccccccccccccccce--ecccccCCC---CccEEeeeccccceecccccccc
Confidence            99999999999999999875 7789999999999988755221  222223332   56999999997 577777 5899


Q ss_pred             eEEEEeCCCcccceeeccCCCccCEEEEEEc---cCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeE
Q 001163          999 QIAIYEAPKLECLKQFVPREASGPITHATYS---CDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPL 1075 (1134)
Q Consensus       999 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s---~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~ 1075 (1134)
                      .|++||+.+++.+..+.  +|...+.++.|+   +||++|++++.|++|+|||+.+++.+..+...     +|...+..+
T Consensus       229 ~i~iwd~~~~~~~~~l~--~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~  301 (325)
T d1pgua1         229 KISCFDGKSGEFLKYIE--DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD-----KQQLGNQQV  301 (325)
T ss_dssp             CEEEEETTTCCEEEECC--BTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECC-----TTCGGGCEE
T ss_pred             ceeeeeecccccccccc--ccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEec-----CCcccCeEE
Confidence            99999999999988886  666666666555   79999999999999999999999988766522     233445566


Q ss_pred             EEEecCCCCCEEEEEecCCcEEEEeC
Q 001163         1076 VIAGNPTDPNQFALGLTDGGVYIIEP 1101 (1134)
Q Consensus      1076 ~~~~~p~~~~~l~s~~~Dg~v~vW~~ 1101 (1134)
                      ++.|.+  +.+|++++.||+|++||+
T Consensus       302 ~~~~~~--~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         302 GVVATG--NGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEEE--TTEEEEEETTSCEEEEET
T ss_pred             EEEECC--CCEEEEEECCCEEEEEEC
Confidence            566555  468999999999999996

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=6.2e-27  Score=253.30  Aligned_cols=278  Identities=12%  Similarity=0.116  Sum_probs=216.7

Q ss_pred             eeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEE
Q 001163          456 HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKA  535 (1134)
Q Consensus       456 ~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~v  535 (1134)
                      ..++.||.++|++++|+|      |+||+.||+|++||+.++     ..+|...|.++++.+.   ..+++++.|+++++
T Consensus         6 i~~l~gH~~~I~~l~~s~------l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~---~~~~s~s~D~~v~~   71 (287)
T d1pgua2           6 LKTISGHNKGITALTVNP------LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA---QEYSSISWDDTLKV   71 (287)
T ss_dssp             EEEECCCSSCEEEEETTT------TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCST---TCCEEEETTTEEEE
T ss_pred             eEEECCCCCceEEEEECc------EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCC---CeEEEEeecccccc
Confidence            347999999999999975      799999999999998764     3579999999998532   56899999999999


Q ss_pred             EecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEE
Q 001163          536 WLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLA  615 (1134)
Q Consensus       536 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  615 (1134)
                      |++....       ....+..+++++++..++++..     ..+.+|+..+++.+..+....  .  ..++++++..+++
T Consensus        72 w~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~v  135 (287)
T d1pgua2          72 NGITKHE-------FGSQPKVASANNDGFTAVLTND-----DDLLILQSFTGDIIKSVRLNS--P--GSAVSLSQNYVAV  135 (287)
T ss_dssp             TTEEEEE-------CSSCEEEEEECSSSEEEEEETT-----SEEEEEETTTCCEEEEEECSS--C--EEEEEECSSEEEE
T ss_pred             ccccccc-------cccceeeeeeccCCceEEEeec-----ccceeeeccceeeeeeccccc--e--eeeeeccCcceee
Confidence            9875421       2345678889999988887653     248899999999888876543  2  3467778888888


Q ss_pred             EeCC-CeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchh
Q 001163          616 AGDE-FMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASA  694 (1134)
Q Consensus       616 ~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  694 (1134)
                      ++.+ +.+++|++...+....+.. .+...+.+++|+|++.+|++++.||.|++||+.++......+             
T Consensus       136 ~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-------------  201 (287)
T d1pgua2         136 GLEEGNTIQVFKLSDLEVSFDLKT-PLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW-------------  201 (287)
T ss_dssp             EETTTSCEEEEETTEEEEEEECSS-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCS-------------
T ss_pred             eccccceeeeeeccccceeeeeee-ccCCceeEEEeccCccccccccccccccceeecccccccccc-------------
Confidence            8866 4799999987666555433 335679999999999999999999999999987762111000             


Q ss_pred             hhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCcc
Q 001163          695 AIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNL  774 (1134)
Q Consensus       695 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~  774 (1134)
                                                                                                    .+
T Consensus       202 ------------------------------------------------------------------------------~~  203 (287)
T d1pgua2         202 ------------------------------------------------------------------------------AF  203 (287)
T ss_dssp             ------------------------------------------------------------------------------CC
T ss_pred             ------------------------------------------------------------------------------cc
Confidence                                                                                          12


Q ss_pred             ccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCC
Q 001163          775 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN  854 (1134)
Q Consensus       775 ~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d  854 (1134)
                      |...|.+++|+|++...                                                         ..+.++
T Consensus       204 h~~~v~~~~~~p~~~~~---------------------------------------------------------~~~~~~  226 (287)
T d1pgua2         204 RTSKINAISWKPAEKGA---------------------------------------------------------NEEEIE  226 (287)
T ss_dssp             CSSCEEEEEECCCC---------------------------------------------------------------CCS
T ss_pred             cccccceeeeccccccc---------------------------------------------------------ccccCC
Confidence            67788999998876522                                                         223456


Q ss_pred             CCeEEEee-CCeEEEEEccC-CeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEc
Q 001163          855 DSYVMSAS-GGKISLFNMMT-FKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNV  914 (1134)
Q Consensus       855 g~~la~~s-dg~i~lwd~~~-~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~  914 (1134)
                      +.++++++ |++|++||+.+ .+.+..+.+|...|++++|+| ++ .|++++.|+.|++|++
T Consensus       227 ~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~-~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         227 EDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             CCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE-TT-EEEEEETTSCEEEEEE
T ss_pred             CCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECC-CC-EEEEEECCCeEEEEEE
Confidence            78899998 99999999976 567777889999999999999 66 5888999999999996

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.95  E-value=1.7e-26  Score=263.88  Aligned_cols=368  Identities=11%  Similarity=0.033  Sum_probs=264.0

Q ss_pred             eEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccC
Q 001163          370 ILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHG  449 (1134)
Q Consensus       370 ~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~  449 (1134)
                      .++++.+.||+|.|||..+++.+..                   +..| ..+..++|||||+++++++.|+.|++||+.+
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~-------------------~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t   92 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTV-------------------LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWM   92 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEE-------------------EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeC
Confidence            3568899999999999999998875                   3334 3699999999999999999999999999988


Q ss_pred             Ccee--eeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEe
Q 001163          450 GDEL--RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFST  527 (1134)
Q Consensus       450 ~~~~--~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~  527 (1134)
                      ++..  .......+|.+.+.+.+|+|||+. ++++++.+++|++||..+++++..+..|...+....+.+.         
T Consensus        93 ~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~-l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~---------  162 (432)
T d1qksa2          93 KEPTTVAEIKIGSEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPE---------  162 (432)
T ss_dssp             SSCCEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESC---------
T ss_pred             CCceEEEEEecCCCCCCeEEecccCCCCCE-EEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCC---------
Confidence            7632  222234467777888889999995 4588999999999999999999988877654433332221         


Q ss_pred             cCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEc
Q 001163          528 ATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFD  607 (1134)
Q Consensus       528 s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~  607 (1134)
                                              .....+.++|+|..++....+   ...|.+||..+++............+..++|+
T Consensus       163 ------------------------~~~~~v~~s~dg~~~~vs~~~---~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~s  215 (432)
T d1qksa2         163 ------------------------PRVAAILASHYRPEFIVNVKE---TGKILLVDYTDLNNLKTTEISAERFLHDGGLD  215 (432)
T ss_dssp             ------------------------CCEEEEEECSSSSEEEEEETT---TTEEEEEETTCSSEEEEEEEECCSSEEEEEEC
T ss_pred             ------------------------CceeEEEECCCCCEEEEEEcc---CCeEEEEEccCCCcceEEEEcccCccccceEC
Confidence                                    223446788888887665532   44689999888776554443334467899999


Q ss_pred             CCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCC---CCCCcceEEEcCCCcEEEEEE-CCCcEEEEEccCCceeEEEec
Q 001163          608 TTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADG---GLQASPCIRFNKEGILLAVST-NDNGIKILANADGIRLLRTVE  682 (1134)
Q Consensus       608 ~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~---~~~~v~~v~~sp~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~  682 (1134)
                      |+++++++++ .++.+.++|..+++.+..+....   +........+...+...++.. .++.+.+|+.....       
T Consensus       216 pdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~-------  288 (432)
T d1qksa2         216 GSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG-------  288 (432)
T ss_dssp             TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT-------
T ss_pred             CCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccc-------
Confidence            9999888887 56689999999998888775421   112222333333343333332 25566666533210       


Q ss_pred             cCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCc
Q 001163          683 SRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEP  762 (1134)
Q Consensus       683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~  762 (1134)
                                                                                                      
T Consensus       289 --------------------------------------------------------------------------------  288 (432)
T d1qksa2         289 --------------------------------------------------------------------------------  288 (432)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCC
Q 001163          763 SQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNP  842 (1134)
Q Consensus       763 ~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h  842 (1134)
                             .  ..+...+....++|++..+++++.+...++|.....                             .  .|
T Consensus       289 -------~--~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~-----------------------------~--~~  328 (432)
T d1qksa2         289 -------H--PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATL-----------------------------N--PE  328 (432)
T ss_dssp             -------C--TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTT-----------------------------C--SS
T ss_pred             -------c--cccccEEEEEEEcCCCCeEEEEecCCccceeecccC-----------------------------C--CC
Confidence                   0  014566788899999999999999999999864321                             0  12


Q ss_pred             CCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEe-----CCCcEEEEEccc
Q 001163          843 EDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGM-----EDSSIQIYNVRV  916 (1134)
Q Consensus       843 ~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-----~dg~i~iwd~~~  916 (1134)
                      ......+++ ||++.+++++ |+.+++|++.++..+   ..|...+..++||| ||++|+++.     .+|.|.|||..+
T Consensus       329 ~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l---~~~~~~v~~~~fS~-DG~~v~~S~~~~~~~~g~i~i~D~~T  403 (432)
T d1qksa2         329 AEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGI---TEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESALVVVDDKT  403 (432)
T ss_dssp             HHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHTC---CSSCCEEEEEEECT-TSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred             CCeeeEEEE-EechhhcccccCCceEeccccccccc---CCCCCcEEEeEECC-CCCEEEEEEecCCCCCCcEEEEECCC
Confidence            223334555 9999999998 899999998765433   34677899999999 787775553     468899999999


Q ss_pred             ceEEEeccCc
Q 001163          917 DEVKTKLKGH  926 (1134)
Q Consensus       917 ~~~~~~l~~h  926 (1134)
                      +++...+++.
T Consensus       404 ~k~~~~i~~~  413 (432)
T d1qksa2         404 LELKHVIKDE  413 (432)
T ss_dssp             TEEEEEECCT
T ss_pred             ceEEeEecCC
Confidence            9998887764

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.9e-26  Score=249.42  Aligned_cols=269  Identities=11%  Similarity=0.157  Sum_probs=210.6

Q ss_pred             ceeEEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEE
Q 001163          347 KTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM  425 (1134)
Q Consensus       347 ~~~~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  425 (1134)
                      .+++++|. |...|++++|+|     |++|+.||+|++||+.++.                        .+|...|.+++
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~~------------------------~~h~~~V~~~~   53 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMH------------------------QDHSNLIVSLD   53 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEEE------------------------CCCCSCEEEEE
T ss_pred             cceeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCCC------------------------CCCCCCEEEEE
Confidence            35677887 999999999998     6899999999999987642                        46999999999


Q ss_pred             EcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecC
Q 001163          426 WSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG  505 (1134)
Q Consensus       426 ~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  505 (1134)
                      |++++ .+++++.|++|++|++...+          +...+.++++++++.  .+ ..+.++.+.+|+..+++.+..+..
T Consensus        54 ~~~~~-~~~s~s~D~~v~~w~~~~~~----------~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~  119 (287)
T d1pgua2          54 NSKAQ-EYSSISWDDTLKVNGITKHE----------FGSQPKVASANNDGF--TA-VLTNDDDLLILQSFTGDIIKSVRL  119 (287)
T ss_dssp             CCSTT-CCEEEETTTEEEETTEEEEE----------CSSCEEEEEECSSSE--EE-EEETTSEEEEEETTTCCEEEEEEC
T ss_pred             ecCCC-eEEEEeeccccccccccccc----------cccceeeeeeccCCc--eE-EEeecccceeeeccceeeeeeccc
Confidence            99765 57899999999999976421          334577889998886  44 455667889999999999888874


Q ss_pred             CCcCEEEEeccccCCccEEEEecCC-CcEEEEecCCCCceeeec-CCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEe
Q 001163          506 HESPVYSICPHHKENIQFIFSTATD-GKIKAWLYDNLGSRVDYD-APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWN  583 (1134)
Q Consensus       506 h~~~v~~~~~~~~~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd  583 (1134)
                      + ..+.++.  +.+  ..+++++.| +.+++|++.......... .+...+.+++|+|++.+|++++.++    .|++||
T Consensus       120 ~-~~~~~~~--~~~--~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg----~i~i~d  190 (287)
T d1pgua2         120 N-SPGSAVS--LSQ--NYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMG----KILLYD  190 (287)
T ss_dssp             S-SCEEEEE--ECS--SEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTS----CEEEEE
T ss_pred             c-ceeeeee--ccC--cceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccc----ccccee
Confidence            4 4455443  333  456555555 579999987655444443 3456899999999999999998654    499999


Q ss_pred             CCCCeeEEE-ecCCCCCceEEEEEcCC----------CCEEEEEeCCCeEEEEEcCC-CceeEEEecCCCCCCcceEEEc
Q 001163          584 ESEGAVKRT-YHGLGKRSVGVVQFDTT----------KNRFLAAGDEFMIKFWDMDN-VNLLASIDADGGLQASPCIRFN  651 (1134)
Q Consensus       584 ~~~~~~~~~-~~~~~~~~v~~~~~~~~----------~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s  651 (1134)
                      +.+++.... +.+|.. .+.+++|+|.          +.++++|+.|+.|++||+++ ++.+..+..  |...|++++|+
T Consensus       191 ~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~--h~~~V~~v~~~  267 (287)
T d1pgua2         191 LQSREVKTSRWAFRTS-KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA--HKDGVNNLLWE  267 (287)
T ss_dssp             TTTTEEEECCSCCCSS-CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTS--STTCEEEEEEE
T ss_pred             eccccccccccccccc-ccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCC--CCCCeEEEEEC
Confidence            999987664 455554 8999999874          46899999999999999977 445555554  47789999999


Q ss_pred             CCCcEEEEEECCCcEEEEEc
Q 001163          652 KEGILLAVSTNDNGIKILAN  671 (1134)
Q Consensus       652 p~~~~l~~~~~dg~i~iw~~  671 (1134)
                      |++ .|++++.||.|++|++
T Consensus       268 ~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         268 TPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             ETT-EEEEEETTSCEEEEEE
T ss_pred             CCC-EEEEEECCCeEEEEEE
Confidence            986 5889999999999986

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2e-26  Score=261.63  Aligned_cols=344  Identities=14%  Similarity=0.159  Sum_probs=222.8

Q ss_pred             EEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcee----EEEecCCCCCCcceE------EEcC-CCcEEEE
Q 001163          591 RTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL----ASIDADGGLQASPCI------RFNK-EGILLAV  659 (1134)
Q Consensus       591 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~v~~v------~~sp-~~~~l~~  659 (1134)
                      ...++|.. .|.++++++  +++++++.|++|++||..+.+..    .......+...+..+      ..+. ++.++++
T Consensus         8 ~~~~~H~~-~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (393)
T d1sq9a_           8 NAGKAHDA-DIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT   84 (393)
T ss_dssp             EESSCSSS-CEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             ecCCcccC-ccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence            34567776 899998864  69999999999999997654321    111111112222211      1122 3457888


Q ss_pred             EECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccc
Q 001163          660 STNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDV  739 (1134)
Q Consensus       660 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~  739 (1134)
                      ++.||.+++|++............                                                        
T Consensus        85 ~~~dg~v~~w~~~~~~~~~~~~~~--------------------------------------------------------  108 (393)
T d1sq9a_          85 TSFSGDLLFYRITREDETKKVIFE--------------------------------------------------------  108 (393)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEE--------------------------------------------------------
T ss_pred             EeCCCcEEEEEccCCCceeeeecc--------------------------------------------------------
Confidence            999999999987654211100000                                                        


Q ss_pred             ccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecC-----CceeeeeccCCeEEeeecCCCCCCccc
Q 001163          740 KPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNS-----GLAILALASNAVHKLWKWPRNERNSTG  814 (1134)
Q Consensus       740 ~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-----g~~l~~~~~dg~i~vw~~~~~~~~~~~  814 (1134)
                                     ...           ......+...+..+++.++     +.++++++.||.+++|++.........
T Consensus       109 ---------------~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~  162 (393)
T d1sq9a_         109 ---------------KLD-----------LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  162 (393)
T ss_dssp             ---------------EEC-----------CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             ---------------ccc-----------eeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccce
Confidence                           000           0000113344556666654     567899999999999998643211000


Q ss_pred             ccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEe------cCCCCCe
Q 001163          815 KATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTF------MPPPPAA  887 (1134)
Q Consensus       815 ~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~------~~~~~~v  887 (1134)
                      ....       ................+...+.+++|+||+ +||+|+ |++|+|||+.+++++..+      .+|...|
T Consensus       163 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V  234 (393)
T d1sq9a_         163 LTLN-------WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI  234 (393)
T ss_dssp             TTTC-------CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCE
T ss_pred             eeee-------eccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceE
Confidence            0000       000000000001111256778999999998 888888 999999999999887654      4688899


Q ss_pred             EEEEEcCCCCcEEEEEeCCCc---EEEEEcccceEEEecc-------------CccCceEEEEEeeCCCEEEEEeCCCcE
Q 001163          888 TFLAFHPQDNNIIAIGMEDSS---IQIYNVRVDEVKTKLK-------------GHQKRITGLAFSNTLNVLVSSGADSQL  951 (1134)
Q Consensus       888 ~~l~~sp~~~~~la~g~~dg~---i~iwd~~~~~~~~~l~-------------~h~~~V~~l~~s~d~~~l~s~s~Dg~i  951 (1134)
                      ++++|+| ++++|++|+.|++   |++||+.+++.+..+.             +|.+.|++++|+||+++|+|+|.|++|
T Consensus       235 ~~l~~sp-dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v  313 (393)
T d1sq9a_         235 RSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL  313 (393)
T ss_dssp             EEEEECS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred             EEccccc-ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEE
Confidence            9999999 8999999999874   9999999988777664             799999999999999999999999999


Q ss_pred             EEEECCCCccccceeeeecCCCCCCC-CCceEEEEcCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEcc
Q 001163          952 CVWSTDGWEKQASKFLTIPNGRTASA-LADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSC 1030 (1134)
Q Consensus       952 ~iwd~~~~~~~~~~~~~~~~~~~~~~-~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~ 1030 (1134)
                      ++||+.+++     ++....+|...- .....++|++++..++++..-.+..|+.  +......              ..
T Consensus       314 ~vWd~~~g~-----~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--------------~~  372 (393)
T d1sq9a_         314 RFWDVKTKE-----RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKK--GWRSGMG--------------AD  372 (393)
T ss_dssp             EEEETTTTE-----EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECT--TTSBSTT--------------CT
T ss_pred             EEEECCCCC-----EEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECcc--Cceeccc--------------cC
Confidence            999999976     455555665311 2234688999999877543222333222  2111000              01


Q ss_pred             CCCEEEEEecCCcEEEeec
Q 001163         1031 DSQSIYVAFEEGSVGVLTA 1049 (1134)
Q Consensus      1031 dg~~l~s~s~Dg~i~vwd~ 1049 (1134)
                      ....|++++.|+.|++|.-
T Consensus       373 ~~~~~~~~~~d~~ir~~~~  391 (393)
T d1sq9a_         373 LNESLCCVCLDRSIRWFRE  391 (393)
T ss_dssp             TSCEEEEEETTTEEEEEEE
T ss_pred             CCCEEEEEEcCCeEEEEeC
Confidence            2456889999999999974

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2e-25  Score=241.33  Aligned_cols=268  Identities=21%  Similarity=0.332  Sum_probs=214.8

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la  434 (1134)
                      |...|+|++|  ||+ +||+|+.||+|+|||+.+++.+..                   +.+|.+.|++++|  ++++|+
T Consensus        14 ~~~~V~c~~~--d~~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------l~~H~~~V~~v~~--~~~~l~   69 (293)
T d1p22a2          14 TSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DERVII   69 (293)
T ss_dssp             SCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSSEEE
T ss_pred             CCCCEEEEEE--cCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EecCCCCEeeeec--ccceee
Confidence            7788998765  777 579999999999999999987764                   6789999999987  678999


Q ss_pred             EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCce---eEEecCCCcCEE
Q 001163          435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK---QYIFEGHESPVY  511 (1134)
Q Consensus       435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~---~~~~~~h~~~v~  511 (1134)
                      +|+.|+.|++|++..+....   ....+...  ...+.+...  .++++..++.+.+||..+...   ...+..|...|.
T Consensus        70 s~s~D~~i~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  142 (293)
T d1p22a2          70 TGSSDSTVRVWDVNTGEMLN---TLIHHCEA--VLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN  142 (293)
T ss_dssp             EEETTSCEEEEESSSCCEEE---EECCCCSC--EEEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEE
T ss_pred             cccccccccccccccccccc---cccccccc--ccccccccc--ceeecccccceeEeeccccccccccccccccccccc
Confidence            99999999999999887554   22223332  234445555  689999999999999887653   445677888898


Q ss_pred             EEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEE
Q 001163          512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKR  591 (1134)
Q Consensus       512 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~  591 (1134)
                      .+.+.  .  ..+++++.|+.|++||+.+.+....+..+...+..+.++  +..+++++.++    .|++||+++.+.+.
T Consensus       143 ~~~~~--~--~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg----~i~i~d~~~~~~~~  212 (293)
T d1p22a2         143 VVDFD--D--KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDN----TIRLWDIECGACLR  212 (293)
T ss_dssp             EEEEE--T--TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTS----CEEEEETTTCCEEE
T ss_pred             cceec--c--cccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCC----EEEEEecccceeee
Confidence            87653  3  578899999999999999988888888777777776664  56888887654    59999999999999


Q ss_pred             EecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC---------CceeEEEecCCCCCCcceEEEcCCCcEEEEEEC
Q 001163          592 TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN---------VNLLASIDADGGLQASPCIRFNKEGILLAVSTN  662 (1134)
Q Consensus       592 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~  662 (1134)
                      .+.++.. .+.  .+++++.+|++++.||.|++||+.+         ...+..+..|  ...|.+++|+  +.+|++++.
T Consensus       213 ~~~~~~~-~v~--~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H--~~~V~~v~~d--~~~l~s~s~  285 (293)
T d1p22a2         213 VLEGHEE-LVR--CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH--SGRVFRLQFD--EFQIVSSSH  285 (293)
T ss_dssp             EECCCSS-CEE--EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC--SSCCCCEEEC--SSCEEECCS
T ss_pred             eecccce-eee--eccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCC--CCCEEEEEEc--CCEEEEEec
Confidence            9888765 454  4667889999999999999999753         2355666644  6789999995  568999999


Q ss_pred             CCcEEEEE
Q 001163          663 DNGIKILA  670 (1134)
Q Consensus       663 dg~i~iw~  670 (1134)
                      ||+|++||
T Consensus       286 Dg~i~iWD  293 (293)
T d1p22a2         286 DDTILIWD  293 (293)
T ss_dssp             SSEEEEEC
T ss_pred             CCEEEEeC
Confidence            99999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=3.8e-26  Score=253.21  Aligned_cols=255  Identities=10%  Similarity=0.011  Sum_probs=190.0

Q ss_pred             ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEE
Q 001163          413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW  492 (1134)
Q Consensus       413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  492 (1134)
                      +..+|++.|++|+|||++++||+|+.||+|+|||+.++..........+|.++|.+++|+|++.. +|++|+.|+.|++|
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~-~l~sg~~d~~v~~w   84 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV   84 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred             cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCC-EEEEcccccceeee
Confidence            36889999999999999999999999999999999887655444445579999999999998665 79999999999999


Q ss_pred             ECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec----C--CCCCeeEEEECcCCCEE
Q 001163          493 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD----A--PGHSSTMMAYSADGARL  566 (1134)
Q Consensus       493 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~----~--~~~~v~~~~~s~~~~~l  566 (1134)
                      ++..+........+...+....+.. .+...+++++.|+.+++||++.........    .  .......+.+.+++..+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (342)
T d1yfqa_          85 DLIGSPSFQALTNNEANLGICRICK-YGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRL  163 (342)
T ss_dssp             CSSSSSSEEECBSCCCCSCEEEEEE-ETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEE
T ss_pred             ecccccccccccccccccccccccc-cccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCce
Confidence            9998888777766554443333322 333789999999999999987544332221    1  12244566778888999


Q ss_pred             EEEecCCCCCeEEEEEeCCCCeeEE---EecCCCCCceEEEE-EcCCCCEEEEEeCCCeEEEEEcCCCcee------EEE
Q 001163          567 FSCGTNKEGESYLVEWNESEGAVKR---TYHGLGKRSVGVVQ-FDTTKNRFLAAGDEFMIKFWDMDNVNLL------ASI  636 (1134)
Q Consensus       567 ~~~~~~~~~~~~i~~wd~~~~~~~~---~~~~~~~~~v~~~~-~~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~  636 (1134)
                      ++++.++    .|++||+.......   ....... ...+.. +..++..+++++.||.+.+|+.......      ...
T Consensus       164 ~~~~~d~----~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~  238 (342)
T d1yfqa_         164 IVGMNNS----QVQWFRLPLCEDDNGTIEESGLKY-QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF  238 (342)
T ss_dssp             EEEESTT----EEEEEESSCCTTCCCEEEECSCSS-CEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred             eeecCCC----cEEEEecccCcccceeeeeccccc-ceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecccccee
Confidence            9987644    59999998764332   2222222 344444 4556788999999999999998654321      111


Q ss_pred             e-------cCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163          637 D-------ADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       637 ~-------~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      .       ...+...+++++|+|++++|++|+.||.|++||+.++
T Consensus       239 ~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~  283 (342)
T d1yfqa_         239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR  283 (342)
T ss_dssp             ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred             eeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCC
Confidence            1       1233456789999999999999999999999999887

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=2.1e-26  Score=258.06  Aligned_cols=202  Identities=14%  Similarity=0.107  Sum_probs=156.5

Q ss_pred             EEEEcC-CCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCC
Q 001163          361 SMDFHP-VQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK  439 (1134)
Q Consensus       361 ~v~fsp-~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~d  439 (1134)
                      .-.||| ||+++ |+++ +|.|++||+.++..+.                     .+|...|.+++|||||++|++++.+
T Consensus         7 ~~~fSP~dG~~~-a~~~-~g~v~v~d~~~~~~~~---------------------~~~~~~v~~~~~spDg~~l~~~~~~   63 (360)
T d1k32a3           7 AEDFSPLDGDLI-AFVS-RGQAFIQDVSGTYVLK---------------------VPEPLRIRYVRRGGDTKVAFIHGTR   63 (360)
T ss_dssp             EEEEEECGGGCE-EEEE-TTEEEEECTTSSBEEE---------------------CSCCSCEEEEEECSSSEEEEEEEET
T ss_pred             cccccCCCCCEE-EEEE-CCeEEEEECCCCcEEE---------------------ccCCCCEEEEEECCCCCEEEEEEcC
Confidence            457999 99964 5554 5799999998876543                     3589999999999999999987655


Q ss_pred             C--EEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccc
Q 001163          440 H--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHH  517 (1134)
Q Consensus       440 g--~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~  517 (1134)
                      .  .|++||+.+++..    .+..|...|.+++|+|||+  +|++++.++.+++|++.+++....+..|...+.+++|++
T Consensus        64 ~g~~v~v~d~~~~~~~----~~~~~~~~v~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  137 (360)
T d1k32a3          64 EGDFLGIYDYRTGKAE----KFEENLGNVFAMGVDRNGK--FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD  137 (360)
T ss_dssp             TEEEEEEEETTTCCEE----ECCCCCCSEEEEEECTTSS--EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT
T ss_pred             CCCEEEEEECCCCcEE----EeeCCCceEEeeeeccccc--ccceeccccccccccccccceeeeeecccccccchhhcc
Confidence            3  7999999988744    3778999999999999999  899999999999999999998888888877777777754


Q ss_pred             cCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCC
Q 001163          518 KENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG  597 (1134)
Q Consensus       518 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~  597 (1134)
                        +|++|+.++.+....                                    ..+..+..+++||..+++........ 
T Consensus       138 --dg~~la~~~~~~~~~------------------------------------~~~~~~~~~~v~d~~~~~~~~~~~~~-  178 (360)
T d1k32a3         138 --NSRFIAYGFPLKHGE------------------------------------TDGYVMQAIHVYDMEGRKIFAATTEN-  178 (360)
T ss_dssp             --TSCEEEEEEEECSST------------------------------------TCSCCEEEEEEEETTTTEEEECSCSS-
T ss_pred             --ceeeeeeeccccccc------------------------------------eeeccccceeeeccccCceeeecccc-
Confidence              345665443221100                                    01122445889999988766544433 


Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc
Q 001163          598 KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN  631 (1134)
Q Consensus       598 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  631 (1134)
                      . .+..++|+|+|++|++++.++.+.+|+.....
T Consensus       179 ~-~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~  211 (360)
T d1k32a3         179 S-HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLN  211 (360)
T ss_dssp             S-BEEEEEECTTSCEEEEEESCCCCCEECSSSSC
T ss_pred             c-ccccccccCCCCEEEEEeCCCceEcccccccc
Confidence            2 67789999999999999999999999876543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=8e-25  Score=236.63  Aligned_cols=235  Identities=15%  Similarity=0.266  Sum_probs=188.2

Q ss_pred             cccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163          414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD  493 (1134)
Q Consensus       414 ~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd  493 (1134)
                      ..+|...|+|++|  ||++||+|+.||+|+|||+.+++.++   ++.+|.+.|++++|  +++  +|+||+.|+.|++|+
T Consensus        11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~v~~--~~~--~l~s~s~D~~i~~~~   81 (293)
T d1p22a2          11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWD   81 (293)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEE
T ss_pred             cCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEeeeec--ccc--eeecccccccccccc
Confidence            4678899998765  89999999999999999999988766   68899999999987  566  799999999999999


Q ss_pred             CCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCcee---eecCCCCCeeEEEECcCCCEEEEEe
Q 001163          494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV---DYDAPGHSSTMMAYSADGARLFSCG  570 (1134)
Q Consensus       494 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~  570 (1134)
                      +..+........+.........  .  ...++++..++.+++|+........   .+..+...+..+.+.  ...+++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s  155 (293)
T d1p22a2          82 VNTGEMLNTLIHHCEAVLHLRF--N--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSAS  155 (293)
T ss_dssp             SSSCCEEEEECCCCSCEEEEEC--C--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEE
T ss_pred             cccccccccccccccccccccc--c--ccceeecccccceeEeeccccccccccccccccccccccceec--cccccccc
Confidence            9999988887766665554432  2  2578999999999999988765433   234455566665554  45666766


Q ss_pred             cCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEE
Q 001163          571 TNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRF  650 (1134)
Q Consensus       571 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  650 (1134)
                      .    ++.+++||..+++.+..+.++.. .+..+.++  +.++++++.||.|++||+.+.+.+.....+  ...+.  .+
T Consensus       156 ~----d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~v~--~~  224 (293)
T d1p22a2         156 G----DRTIKVWNTSTCEFVRTLNGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGH--EELVR--CI  224 (293)
T ss_dssp             T----TSEEEEEETTTCCEEEEEECCSS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCC--SSCEE--EE
T ss_pred             C----CCceeeecCCCCcEEEEEccccc-ccccccCC--CCeEEEecCCCEEEEEecccceeeeeeccc--ceeee--ec
Confidence            5    34699999999999999988876 66666654  578999999999999999999998887754  33443  46


Q ss_pred             cCCCcEEEEEECCCcEEEEEccCC
Q 001163          651 NKEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       651 sp~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      ++++.+|++++.||.|++||+...
T Consensus       225 ~~~~~~l~sg~~dg~i~iwd~~~~  248 (293)
T d1p22a2         225 RFDNKRIVSGAYDGKIKVWDLVAA  248 (293)
T ss_dssp             ECCSSEEEEEETTSCEEEEEHHHH
T ss_pred             cccceEEEEEcCCCEEEEEECCCC
Confidence            678899999999999999998654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=9.9e-25  Score=247.46  Aligned_cols=268  Identities=11%  Similarity=0.071  Sum_probs=199.0

Q ss_pred             ccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceee---eeeeeecCCCCEEEEEEe---c-CC-CceEEEEEe
Q 001163          413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELR---NHLEIEAHVGSVNDLAFS---Y-PN-KQLSVVTCG  484 (1134)
Q Consensus       413 ~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~---~~~~l~~h~~~V~~v~~s---~-~~-~~~~l~s~s  484 (1134)
                      ...+|.+.|.++++++  ++++++|.|++|+|||..+.+...   .......|...+..+...   + ++ ...++++++
T Consensus         9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   86 (393)
T d1sq9a_           9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS   86 (393)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence            3679999999999875  699999999999999987654211   111233455554433322   1 11 112688999


Q ss_pred             CCCeEEEEECCCCceeEEe----------cCCCcCEEEEeccccCC---ccEEEEecCCCcEEEEecCCCCcee------
Q 001163          485 EDRVIKVWDAVTGTKQYIF----------EGHESPVYSICPHHKEN---IQFIFSTATDGKIKAWLYDNLGSRV------  545 (1134)
Q Consensus       485 ~d~~i~iwd~~~~~~~~~~----------~~h~~~v~~~~~~~~~~---~~~l~s~s~dg~i~vwd~~~~~~~~------  545 (1134)
                      .||.|++|++..+.....+          ..+...+..+++.+..+   +.++++++.||.+++|++.......      
T Consensus        87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~  166 (393)
T d1sq9a_          87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN  166 (393)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred             CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeee
Confidence            9999999997654322111          12455677777665432   4789999999999999985322110      


Q ss_pred             ------------eecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEec------CCCCCceEEEEEc
Q 001163          546 ------------DYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH------GLGKRSVGVVQFD  607 (1134)
Q Consensus       546 ------------~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~------~~~~~~v~~~~~~  607 (1134)
                                  ....+...+.+++|+|++ ++++++.|    +.|++||+.+++.+..+.      +|.. .|.+++|+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~D----g~i~iwd~~~~~~~~~~~~~~~l~~h~~-~V~~l~~s  240 (393)
T d1sq9a_         167 WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN----GTVQISELSTLRPLYNFESQHSMINNSN-SIRSVKFS  240 (393)
T ss_dssp             CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT----SEEEEEETTTTEEEEEEECCC---CCCC-CEEEEEEC
T ss_pred             eccceecccceecccCCCCcEEEEEECCCC-EEEEEeCC----CcEEEEeecccccccccccccccccccc-eEEEcccc
Confidence                        112233468899999998 78888754    469999999998877654      3444 89999999


Q ss_pred             CCCCEEEEEeCCC---eEEEEEcCCCceeEEEec-----------CCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccC
Q 001163          608 TTKNRFLAAGDEF---MIKFWDMDNVNLLASIDA-----------DGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD  673 (1134)
Q Consensus       608 ~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~-----------~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~  673 (1134)
                      |++++|++|+.|+   .|++||+.+++.+..+..           .+|...|++++|+|++++|++++.|++|++||+.+
T Consensus       241 pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~  320 (393)
T d1sq9a_         241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT  320 (393)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             cccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCC
Confidence            9999999999886   599999999998887752           24577899999999999999999999999999999


Q ss_pred             CceeEEEeccCccccc
Q 001163          674 GIRLLRTVESRTFDAS  689 (1134)
Q Consensus       674 ~~~~~~~~~~~~~~~~  689 (1134)
                      + +++.++.+|...+.
T Consensus       321 g-~~~~~l~gH~~~v~  335 (393)
T d1sq9a_         321 K-ERITTLNMHCDDIE  335 (393)
T ss_dssp             T-EEEEEEECCGGGCS
T ss_pred             C-CEEEEECCcCCccc
Confidence            8 88899999877654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2.7e-26  Score=254.41  Aligned_cols=292  Identities=9%  Similarity=0.079  Sum_probs=207.7

Q ss_pred             EEEee-cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC
Q 001163          350 VMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP  428 (1134)
Q Consensus       350 ~~~~~-h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  428 (1134)
                      ++..+ |.+.|++|+|||+|+ +||+|+.||+|+|||+.++.......                ...+|.++|.+++|+|
T Consensus         4 v~~~~~h~d~I~~l~fsp~~~-~L~s~s~Dg~v~iwd~~~~~~~~~~~----------------~~~~h~~~V~~v~f~~   66 (342)
T d1yfqa_           4 VQIEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDLL----------------QSLRYKHPLLCCNFID   66 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEEE----------------EEEECSSCEEEEEEEE
T ss_pred             EEcCCCCCCCEEEEEEeCCCC-EEEEEECCCeEEEEEccCCCcceEEE----------------EecCCCCCEEEEEEeC
Confidence            44444 899999999999999 56899999999999998765433210                1346999999999999


Q ss_pred             C-CCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeE----Ee
Q 001163          429 D-GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY----IF  503 (1134)
Q Consensus       429 d-~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~----~~  503 (1134)
                      + +.+|++|+.||.|++|++..+......  ...+........+.+++.  .+++++.|+++++||++++....    ..
T Consensus        67 ~~~~~l~sg~~d~~v~~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~wd~~~~~~~~~~~~~~  142 (342)
T d1yfqa_          67 NTDLQIYVGTVQGEILKVDLIGSPSFQAL--TNNEANLGICRICKYGDD--KLIAASWDGLIEVIDPRNYGDGVIAVKNL  142 (342)
T ss_dssp             SSSEEEEEEETTSCEEEECSSSSSSEEEC--BSCCCCSCEEEEEEETTT--EEEEEETTSEEEEECHHHHTTBCEEEEES
T ss_pred             CCCCEEEEcccccceeeeecccccccccc--cccccccccccccccccc--cccccccccccceeeccccccceeeeccc
Confidence            6 568999999999999999887655421  222333444555666666  79999999999999986554332    22


Q ss_pred             cCCCc--CEEEEeccccCCccEEEEecCCCcEEEEecCCCCceee---ecCCCCCeeEEEE-CcCCCEEEEEecCCCCCe
Q 001163          504 EGHES--PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD---YDAPGHSSTMMAY-SADGARLFSCGTNKEGES  577 (1134)
Q Consensus       504 ~~h~~--~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~---~~~~~~~v~~~~~-s~~~~~l~~~~~~~~~~~  577 (1134)
                      ..+..  ......+.  .++..+++++.|+.|++||+........   .......+.+..+ ..++..+++++.++    
T Consensus       143 ~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg----  216 (342)
T d1yfqa_         143 NSNNTKVKNKIFTMD--TNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG----  216 (342)
T ss_dssp             CSSSSSSCCCEEEEE--ECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS----
T ss_pred             ccccccceeeeeeee--ccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCC----
Confidence            22222  22233333  3347899999999999999986654432   2223334555554 45667788877543    


Q ss_pred             EEEEEeCCCCeeE------EEe---c-----CCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCC
Q 001163          578 YLVEWNESEGAVK------RTY---H-----GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQ  643 (1134)
Q Consensus       578 ~i~~wd~~~~~~~------~~~---~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  643 (1134)
                      .+.+|+.......      ..+   .     ..+...+.+++|+|++++|++|+.||.|++||+.+++.+..+..+   .
T Consensus       217 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~---~  293 (342)
T d1yfqa_         217 RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF---N  293 (342)
T ss_dssp             EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC---S
T ss_pred             eEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC---C
Confidence            5888876543211      111   1     112236789999999999999999999999999999988877532   2


Q ss_pred             CcceEEEcCCCcEEEEEECCCcEEEEEc
Q 001163          644 ASPCIRFNKEGILLAVSTNDNGIKILAN  671 (1134)
Q Consensus       644 ~v~~v~~sp~~~~l~~~~~dg~i~iw~~  671 (1134)
                      .+..++|+|+++++++++.|+.+++|..
T Consensus       294 ~~~~~~~s~~~~~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         294 EDSVVKIACSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             SSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred             CCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence            4567889999999999999988887754

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=4.4e-25  Score=253.13  Aligned_cols=364  Identities=10%  Similarity=0.025  Sum_probs=242.0

Q ss_pred             EEcCCCCe-EEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCE
Q 001163          363 DFHPVQQI-LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHI  441 (1134)
Q Consensus       363 ~fsp~g~~-lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~  441 (1134)
                      .++.|.+. ++++.+.||+|+|||+.+++.+.+                   +..| ..+..++|||||++|++++.|++
T Consensus        25 ~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~-------------------l~~g-~~~~~vafSPDGk~l~~~~~d~~   84 (426)
T d1hzua2          25 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKV-------------------IDTG-YAVHISRMSASGRYLLVIGRDAR   84 (426)
T ss_dssp             CSCCCGGGEEEEEETTTTEEEEEETTTCSEEEE-------------------EECC-SSEEEEEECTTSCEEEEEETTSE
T ss_pred             cccCCCCeEEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEeCCCC
Confidence            35555443 457788999999999999988764                   3344 46999999999999999999999


Q ss_pred             EEEEEccCCceee--eeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccC
Q 001163          442 VHLYTYHGGDELR--NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKE  519 (1134)
Q Consensus       442 v~iwd~~~~~~~~--~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~  519 (1134)
                      |++||+.+++...  ......+|.+.+.+++|+|||+. +++++..++.+++||..++.++..+.+|...+..+.+.+.+
T Consensus        85 v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~-l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (426)
T d1hzua2          85 IDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEP  163 (426)
T ss_dssp             EEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCC
T ss_pred             EEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCE-EEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCC
Confidence            9999999887432  22234467778888999999995 35677789999999999999999998887776655554433


Q ss_pred             CccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEE-EecCCCC
Q 001163          520 NIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKR-TYHGLGK  598 (1134)
Q Consensus       520 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~-~~~~~~~  598 (1134)
                      . ...+..+.|+...+|....                                   ...+.+++...+.... ....+. 
T Consensus       164 ~-~~~i~~s~d~~~~~~~~~~-----------------------------------~~~i~~~~~~~~~~~~~~~~~~~-  206 (426)
T d1hzua2         164 R-VAAIIASHEHPEFIVNVKE-----------------------------------TGKVLLVNYKDIDNLTVTSIGAA-  206 (426)
T ss_dssp             C-EEEEEECSSSSEEEEEETT-----------------------------------TTEEEEEECSSSSSCEEEEEECC-
T ss_pred             c-eeEEEECCCCCEEEEecCC-----------------------------------CCeEEEEEeccccceeeEEeccC-
Confidence            2 2344455555544443221                                   1123333333332211 111222 


Q ss_pred             CceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCc-EEE--EEECCCcEEEEEccCC
Q 001163          599 RSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI-LLA--VSTNDNGIKILANADG  674 (1134)
Q Consensus       599 ~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~--~~~~dg~i~iw~~~~~  674 (1134)
                      ..+..+.|+|++++++++. .+..+.+|+..+++.+................+...+. .+.  ..+.|+.+.+|+....
T Consensus       207 ~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~  286 (426)
T d1hzua2         207 PFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPK  286 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTT
T ss_pred             CccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccc
Confidence            2678899999999988887 67789999999999988887544333334444443322 111  1223455555443221


Q ss_pred             ceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccccccccccccee
Q 001163          675 IRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIW  754 (1134)
Q Consensus       675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw  754 (1134)
                      .                                                                           +.+|
T Consensus       287 ~---------------------------------------------------------------------------~~~~  291 (426)
T d1hzua2         287 N---------------------------------------------------------------------------HPQY  291 (426)
T ss_dssp             T---------------------------------------------------------------------------CTTT
T ss_pred             c---------------------------------------------------------------------------cccc
Confidence            0                                                                           0000


Q ss_pred             eecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccc
Q 001163          755 KLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMT  834 (1134)
Q Consensus       755 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  834 (1134)
                                                                                                .++...
T Consensus       292 --------------------------------------------------------------------------~~~~~~  297 (426)
T d1hzua2         292 --------------------------------------------------------------------------AWKKVA  297 (426)
T ss_dssp             --------------------------------------------------------------------------BTSEEE
T ss_pred             --------------------------------------------------------------------------cceEeE
Confidence                                                                                      000000


Q ss_pred             cCCCCCCCCCCeeEEEEcCCCCeEEE-------ee-CCeEEEEEccCCeEEEEe---------cCCCCCeEEEEEcCCCC
Q 001163          835 NDISDTNPEDAVPCFALSKNDSYVMS-------AS-GGKISLFNMMTFKTMTTF---------MPPPPAATFLAFHPQDN  897 (1134)
Q Consensus       835 ~~~~~~~h~~~v~~v~~s~dg~~la~-------~s-dg~i~lwd~~~~~~~~~~---------~~~~~~v~~l~~sp~~~  897 (1134)
                       .+.  +|...+..++|+||+++|++       ++ +++|+|||+.+++...++         ..+...|..++||| ||
T Consensus       298 -~l~--g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp-DG  373 (426)
T d1hzua2         298 -ELQ--GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RG  373 (426)
T ss_dssp             -EEE--CSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECS-SS
T ss_pred             -EEe--cCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECC-CC
Confidence             011  26677778888888888884       33 688999999998876554         23556799999999 77


Q ss_pred             cEEE-EE----eCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEE
Q 001163          898 NIIA-IG----MEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLV  943 (1134)
Q Consensus       898 ~~la-~g----~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~  943 (1134)
                      ++++ ++    +.++.|+|||..+++....+.++.      .++|+|++-+
T Consensus       374 k~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~~  418 (426)
T d1hzua2         374 DEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFNV  418 (426)
T ss_dssp             SEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEEH
T ss_pred             CEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC------ccCCCceEeE
Confidence            7654 32    357889999999999999888775      3467777643

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=9.3e-25  Score=249.31  Aligned_cols=362  Identities=10%  Similarity=0.015  Sum_probs=248.7

Q ss_pred             cCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCce--eEEe-
Q 001163          427 SPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK--QYIF-  503 (1134)
Q Consensus       427 spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~--~~~~-  503 (1134)
                      +++.-++++.+.||+|.|||..+++.++   .+..|. .+..++|||||+  ++++++.|++|++||+.+++.  +..+ 
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~---~~~~g~-~~~~v~fSpDG~--~l~~~s~dg~v~~~d~~t~~~~~~~~i~  102 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTYEIKT---VLDTGY-AVHISRLSASGR--YLFVIGRDGKVNMIDLWMKEPTTVAEIK  102 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEE---EEECSS-CEEEEEECTTSC--EEEEEETTSEEEEEETTSSSCCEEEEEE
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCCcEEE---EEeCCC-CeeEEEECCCCC--EEEEEcCCCCEEEEEeeCCCceEEEEEe
Confidence            3344456888999999999999999877   466564 699999999999  789999999999999988764  3333 


Q ss_pred             --cCCCcCEEEEeccccCCccEE-EEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEE
Q 001163          504 --EGHESPVYSICPHHKENIQFI-FSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLV  580 (1134)
Q Consensus       504 --~~h~~~v~~~~~~~~~~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~  580 (1134)
                        .+|.+.+.+..|  ++||++| ++++.++.|++||..+.+....+..+...+....+.+++                 
T Consensus       103 ~~~~~~~~~~s~~~--SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~-----------------  163 (432)
T d1qksa2         103 IGSEARSIETSKME--GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEP-----------------  163 (432)
T ss_dssp             CCSEEEEEEECCST--TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCC-----------------
T ss_pred             cCCCCCCeEEeccc--CCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCC-----------------
Confidence              345555555555  4566765 788889999999998877666555443333323333322                 


Q ss_pred             EEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEE-EeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEE
Q 001163          581 EWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLA-AGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAV  659 (1134)
Q Consensus       581 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~  659 (1134)
                                         ....+.++|++..++. ...++.|.+||..+.+......... ...+..++|+|+|+++++
T Consensus       164 -------------------~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~-g~~~~~~~~spdg~~~~v  223 (432)
T d1qksa2         164 -------------------RVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISA-ERFLHDGGLDGSHRYFIT  223 (432)
T ss_dssp             -------------------CEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEEC-CSSEEEEEECTTSCEEEE
T ss_pred             -------------------ceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcc-cCccccceECCCCCEEEE
Confidence                               3345678888877654 5578999999999887655443222 235678999999998877


Q ss_pred             EEC-CCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcc
Q 001163          660 STN-DNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTD  738 (1134)
Q Consensus       660 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  738 (1134)
                      ++. ++.+.+++..++ .....+......                                                   
T Consensus       224 a~~~~~~v~v~d~~~~-~~~~~~~~g~~~---------------------------------------------------  251 (432)
T d1qksa2         224 AANARNKLVVIDTKEG-KLVAIEDTGGQT---------------------------------------------------  251 (432)
T ss_dssp             EEGGGTEEEEEETTTT-EEEEEEECSSSS---------------------------------------------------
T ss_pred             eccccceEEEeecccc-eEEEEeccCccc---------------------------------------------------
Confidence            765 457888888766 333332211000                                                   


Q ss_pred             cccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeec-cCCeEEeeecCCCCCCcccccc
Q 001163          739 VKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALA-SNAVHKLWKWPRNERNSTGKAT  817 (1134)
Q Consensus       739 ~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~  817 (1134)
                                                         .+........+...+....+.. .++.+.+|.....         
T Consensus       252 -----------------------------------~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~---------  287 (432)
T d1qksa2         252 -----------------------------------PHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE---------  287 (432)
T ss_dssp             -----------------------------------BCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT---------
T ss_pred             -----------------------------------cccCcccceecCCCCceecccccCCceEEecccccc---------
Confidence                                               0111122233333333333332 3677888754321         


Q ss_pred             cCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCC
Q 001163          818 TNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQD  896 (1134)
Q Consensus       818 ~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~  896 (1134)
                                   .     ..  .|...+....+++++..+++++ +++.++|+..+..      .|......+++ | |
T Consensus       288 -------------~-----~~--~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~------~~~~~~~sv~v-p-D  339 (432)
T d1qksa2         288 -------------G-----HP--DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN------PEAEISGSVAV-F-D  339 (432)
T ss_dssp             -------------T-----CT--TTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC------SSHHHHTCEEE-E-E
T ss_pred             -------------c-----cc--ccccEEEEEEEcCCCCeEEEEecCCccceeecccCC------CCCCeeeEEEE-E-e
Confidence                         0     11  1667788999999999888887 8999999875432      23323344555 7 8


Q ss_pred             CcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEe-----CCCcEEEEECCCCc
Q 001163          897 NNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSG-----ADSQLCVWSTDGWE  960 (1134)
Q Consensus       897 ~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s-----~Dg~i~iwd~~~~~  960 (1134)
                      ++.+++++.|+.+++|++.++.   .+..|...|.+++|||||++++.+.     .++.|+|||..+.+
T Consensus       340 g~~la~~s~d~~~k~w~~~~~~---~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k  405 (432)
T d1qksa2         340 IKAMTGDGSDPEFKTLPIAEWA---GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE  405 (432)
T ss_dssp             GGGCCCSSSCCCEEEECHHHHH---TCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred             chhhcccccCCceEeccccccc---ccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCce
Confidence            9999999999999999987764   3446778899999999999886553     46889999999966

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=1.6e-25  Score=250.85  Aligned_cols=311  Identities=10%  Similarity=0.016  Sum_probs=225.7

Q ss_pred             EeCC-CCCCcccccCCC-----CCceeEEEeecCCCeeEEEEcCCCCeEEEEEeCCC-cEEEEecCCccceeeeceeeee
Q 001163          329 AYTP-QSLGQSSYSTDD-----LPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMG-DVMLWEVGSRERIAVKSFKVWE  401 (1134)
Q Consensus       329 ~~s~-~~~~l~~~~~d~-----~~~~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg-~v~iwd~~~~~~~~~~~~~~~~  401 (1134)
                      .||| +|+.+|+.+...     ........+.|...|++++|||||++|+++|..++ .|++||+.+++...        
T Consensus         9 ~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~--------   80 (360)
T d1k32a3           9 DFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK--------   80 (360)
T ss_dssp             EEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE--------
T ss_pred             cccCCCCCEEEEEECCeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEE--------
Confidence            4998 899988765432     22334455689999999999999997766666554 79999999887554        


Q ss_pred             ccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEE
Q 001163          402 LGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVV  481 (1134)
Q Consensus       402 ~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~  481 (1134)
                                  +.+|...|.+++|+|||++|++++.++.+++|++.+++...   .+..|...+.+++|+|||+  +|+
T Consensus        81 ------------~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~spdg~--~la  143 (360)
T d1k32a3          81 ------------FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV---IERSREAMITDFTISDNSR--FIA  143 (360)
T ss_dssp             ------------CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCCEEECTTSC--EEE
T ss_pred             ------------eeCCCceEEeeeecccccccceeccccccccccccccceee---eeecccccccchhhcccee--eee
Confidence                        56799999999999999999999999999999999988654   5778999999999999999  566


Q ss_pred             EE----------eCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCce-------
Q 001163          482 TC----------GEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR-------  544 (1134)
Q Consensus       482 s~----------s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-------  544 (1134)
                      .+          ..++.+++||+.+++..... .|...+..++|++  +|+.|++++.++.+++|+.......       
T Consensus       144 ~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~sp--dg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~  220 (360)
T d1k32a3         144 YGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDA--DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKP  220 (360)
T ss_dssp             EEEEECSSTTCSCCEEEEEEEETTTTEEEECS-CSSSBEEEEEECT--TSCEEEEEESCCCCCEECSSSSCEECCSCBEE
T ss_pred             eeccccccceeeccccceeeeccccCceeeec-ccccccccccccC--CCCEEEEEeCCCceEcccccccceeeccccce
Confidence            43          34557999999888765544 4667788888754  5689999999999999987543321       


Q ss_pred             eeecCCCCCeeEEEECcCCCEEEEEecCCCC-CeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCC---CEEEEEeCCC
Q 001163          545 VDYDAPGHSSTMMAYSADGARLFSCGTNKEG-ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK---NRFLAAGDEF  620 (1134)
Q Consensus       545 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg  620 (1134)
                      .....+...+..+.+++++..++.+..+..+ ...+..++...+.... +..+.. .+..+.+...+   .++++++.++
T Consensus       221 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  298 (360)
T d1k32a3         221 FVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRM-IIPLES-SILIYSVPVHGEFAAYYQGAPEKG  298 (360)
T ss_dssp             EEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEE-EEECSS-EEEEEECCCCCSHHHHHHCCCCCE
T ss_pred             EEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeE-eeecCC-CceEEEEEecCCCeeEEEecCCCC
Confidence            1122233344455667777666554332211 1124444545444332 222222 34444444433   4567788899


Q ss_pred             eEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCc
Q 001163          621 MIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGI  675 (1134)
Q Consensus       621 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~  675 (1134)
                      .|++||+.+++....      ...|..++|+|||++|++++.||.|++|++..+.
T Consensus       299 ~i~~~d~~~~~~~~~------~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~  347 (360)
T d1k32a3         299 VLLKYDVKTRKVTEV------KNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPE  347 (360)
T ss_dssp             EEEEEETTTCCEEEE------EEEEEEEEECTTSCEEEEEETTSCEEEEESSCTT
T ss_pred             EEEEEECCCCeEEEe------cCCcCEEEECCCCCEEEEEECCCeEEEEECCCCC
Confidence            999999998765432      2247899999999999999999999999998873

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=1.4e-23  Score=240.39  Aligned_cols=345  Identities=9%  Similarity=0.030  Sum_probs=236.3

Q ss_pred             CeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEe--c-CCCCCCcceEEEcC
Q 001163          576 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID--A-DGGLQASPCIRFNK  652 (1134)
Q Consensus       576 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~-~~~~~~v~~v~~sp  652 (1134)
                      ++.|++||+.+++.+.++..+.  .+..++|+|||+++++++.|+.|++||+.+++......  . .++...+.+++|+|
T Consensus        41 dg~v~vwD~~t~~~~~~l~~g~--~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~sp  118 (426)
T d1hzua2          41 AGQIALVDGDSKKIVKVIDTGY--AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGY  118 (426)
T ss_dssp             TTEEEEEETTTCSEEEEEECCS--SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTC
T ss_pred             CCEEEEEECCCCcEEEEEeCCC--CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecC
Confidence            4579999999999999998864  58899999999999999999999999999988654432  1 12233456778889


Q ss_pred             CCcEEEE-EECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCC
Q 001163          653 EGILLAV-STNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSN  731 (1134)
Q Consensus       653 ~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  731 (1134)
                      ||+++++ +..++.+++||..++ .....+..+...+...                                        
T Consensus       119 DG~~l~v~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~----------------------------------------  157 (426)
T d1hzua2         119 EDRYTIAGAYWPPQFAIMDGETL-EPKQIVSTRGMTVDTQ----------------------------------------  157 (426)
T ss_dssp             TTTEEEEEEEESSEEEEEETTTC-CEEEEEECCEECSSSC----------------------------------------
T ss_pred             CCCEEEEeecCCCeEEEEcCCcc-ceeEEeeccCCCccce----------------------------------------
Confidence            9998755 557899999999887 4555554432211100                                        


Q ss_pred             CCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccC-CeEEeeecCCCCC
Q 001163          732 DSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASN-AVHKLWKWPRNER  810 (1134)
Q Consensus       732 ~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~d-g~i~vw~~~~~~~  810 (1134)
                                           .                   -.+......+.+++++..++....+ +.+.+++...   
T Consensus       158 ---------------------~-------------------~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~---  194 (426)
T d1hzua2         158 ---------------------T-------------------YHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD---  194 (426)
T ss_dssp             ---------------------C-------------------EESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSS---
T ss_pred             ---------------------e-------------------ecCCCceeEEEECCCCCEEEEecCCCCeEEEEEecc---
Confidence                                 0                   0133445667788888877665553 5555554321   


Q ss_pred             CcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee--CCeEEEEEccCCeEEEEecCC--CCC
Q 001163          811 NSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMPP--PPA  886 (1134)
Q Consensus       811 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s--dg~i~lwd~~~~~~~~~~~~~--~~~  886 (1134)
                                         +........  .+...+..++|+|++++++++.  ++.+.+++..+++.+......  ...
T Consensus       195 -------------------~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (426)
T d1hzua2         195 -------------------IDNLTVTSI--GAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHP  253 (426)
T ss_dssp             -------------------SSSCEEEEE--ECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCC
T ss_pred             -------------------ccceeeEEe--ccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccc
Confidence                               111111011  1567789999999999998887  577999999999988876532  222


Q ss_pred             eEEEEEcCCCCcEE--EEEeCCCcEEEEEccc-------ceEEEeccCccCceEEEEEeeCCCEEEE-------EeCCCc
Q 001163          887 ATFLAFHPQDNNII--AIGMEDSSIQIYNVRV-------DEVKTKLKGHQKRITGLAFSNTLNVLVS-------SGADSQ  950 (1134)
Q Consensus       887 v~~l~~sp~~~~~l--a~g~~dg~i~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~d~~~l~s-------~s~Dg~  950 (1134)
                      .....+.......+  +..+.|+.+.+|+...       ++...++.+|...+..++|+||+++|++       ++.|++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~t  333 (426)
T d1hzua2         254 GRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS  333 (426)
T ss_dssp             SCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTC
T ss_pred             cceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCE
Confidence            23333333122222  2334577788877643       4778899999999999999999999994       566899


Q ss_pred             EEEEECCCCccccceeeeec--CCCCCCCCCceEEEEcCCCCEEEEE------eeceEEEEeCCCcccceeeccCCCccC
Q 001163          951 LCVWSTDGWEKQASKFLTIP--NGRTASALADTRVQFHLDQTHLLAV------HETQIAIYEAPKLECLKQFVPREASGP 1022 (1134)
Q Consensus       951 i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~v~~l~fs~dg~~l~~~------~d~~i~iwd~~~~~~~~~~~~~~h~~~ 1022 (1134)
                      |+|||+.+++..... ....  .++......+.+++|||||++++++      .++.|+|||.++++....+.  ++.  
T Consensus       334 v~vwd~~t~~~~~~~-~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~--~~~--  408 (426)
T d1hzua2         334 VAVFDLKNLDAKYQV-LPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK--DPR--  408 (426)
T ss_dssp             EEEEETTCTTSCCEE-ECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEEC--CTT--
T ss_pred             EEEEECCCCCcCeEE-eccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEEC--CCC--
Confidence            999999987744321 1110  1111112458889999999988653      36789999999999887776  322  


Q ss_pred             EEEEEEccCCCEEE
Q 001163         1023 ITHATYSCDSQSIY 1036 (1134)
Q Consensus      1023 v~~~~~s~dg~~l~ 1036 (1134)
                          .++|+|+|-+
T Consensus       409 ----~~tp~Gk~~~  418 (426)
T d1hzua2         409 ----LITPTGKFNV  418 (426)
T ss_dssp             ----CCSEEEEEEH
T ss_pred             ----ccCCCceEeE
Confidence                4467887743

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.89  E-value=1.4e-20  Score=204.09  Aligned_cols=276  Identities=13%  Similarity=0.103  Sum_probs=217.0

Q ss_pred             eEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE-EEeCCCEEEEEEcc
Q 001163          370 ILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG-VAYSKHIVHLYTYH  448 (1134)
Q Consensus       370 ~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la-s~s~dg~v~iwd~~  448 (1134)
                      |+.++++.|++|.|||+.+++.+.+.                    .....+..++|||||++|+ +++.++.|++||+.
T Consensus         3 ~~yV~~~~~~~v~v~D~~t~~~~~~i--------------------~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~   62 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTSNKVTATI--------------------PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA   62 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEE--------------------ECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred             EEEEEECCCCEEEEEECCCCeEEEEE--------------------ECCCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence            56678899999999999999876541                    1234678999999999885 66788999999999


Q ss_pred             CCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEec
Q 001163          449 GGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA  528 (1134)
Q Consensus       449 ~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s  528 (1134)
                      +++.+.   .+..|. .+..++|++++.. +++++..++.+.+||..+++....+..+ ....+++++++.. .+++++.
T Consensus        63 t~~~~~---~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~-~~~~~~~  135 (301)
T d1l0qa2          63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGK-KLYVTNN  135 (301)
T ss_dssp             TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSS-EEEEEET
T ss_pred             CCceee---eeeccc-ccccccccccccc-ccccccccceeeecccccceeeeecccc-ccceEEEeecCCC-eeeeeec
Confidence            998765   455555 4688999999986 5667778899999999999999888755 4566777765442 3456777


Q ss_pred             CCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcC
Q 001163          529 TDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT  608 (1134)
Q Consensus       529 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~  608 (1134)
                      .++.+.+|+..+......+... .....++++|+++.++++..+   ...+.+|+....+.........  ....+++++
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  209 (301)
T d1l0qa2         136 GDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFD---SMSISVIDTVTNSVIDTVKVEA--APSGIAVNP  209 (301)
T ss_dssp             TTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETT---TTEEEEEETTTTEEEEEEECSS--EEEEEEECT
T ss_pred             cccceeeeeccccceeeecccC-CCceEEEeeccccceeeeccc---ccccccccccceeeeecccccC--Ccceeeccc
Confidence            8899999999877666655543 457789999999999888653   3458888888887777766554  567889999


Q ss_pred             CCCEEEEEe---CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEE-EEEECCCcEEEEEccCCceeEEEec
Q 001163          609 TKNRFLAAG---DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILL-AVSTNDNGIKILANADGIRLLRTVE  682 (1134)
Q Consensus       609 ~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~  682 (1134)
                      +++.++.++   .++.|++||..+++.+..+...   ..+.+++|+|||++| ++++.++.|++||+.++ +.+.++.
T Consensus       210 ~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~---~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~-~~~~~~~  283 (301)
T d1l0qa2         210 EGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG---PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATN-TITATMA  283 (301)
T ss_dssp             TSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE
T ss_pred             cccccccccccceeeeeeeeecCCCeEEEEEcCC---CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCC-eEEEEEe
Confidence            999887664   4468999999999998888653   357899999999976 56777999999999998 5566554

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=1.7e-20  Score=207.21  Aligned_cols=293  Identities=10%  Similarity=0.089  Sum_probs=200.1

Q ss_pred             CEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEE-EEECCCcEEEEEccCCceeEEEeccCccccc
Q 001163          611 NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLA-VSTNDNGIKILANADGIRLLRTVESRTFDAS  689 (1134)
Q Consensus       611 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~  689 (1134)
                      +++++++.|++|++||+.+++.+..+..+.....+..++|+|||++++ +++.++.|.+||+.++ +....+..+...  
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~-~~~~~~~~~~~~--   78 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG-ETLGRIDLSTPE--   78 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC-CEEEEEECCBTT--
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCC-cEEEEEecCCCc--
Confidence            589999999999999999999999998765555678999999999874 5667999999999988 444443321110  


Q ss_pred             ccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccc
Q 001163          690 RVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLR  769 (1134)
Q Consensus       690 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~  769 (1134)
                                                                                                      
T Consensus        79 --------------------------------------------------------------------------------   78 (337)
T d1pbyb_          79 --------------------------------------------------------------------------------   78 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEE
Q 001163          770 LPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCF  849 (1134)
Q Consensus       770 ~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v  849 (1134)
                          .+...+..++|+|+++.++++..+.....|..                                            
T Consensus        79 ----~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~--------------------------------------------  110 (337)
T d1pbyb_          79 ----ERVKSLFGAALSPDGKTLAIYESPVRLELTHF--------------------------------------------  110 (337)
T ss_dssp             ----EEEECTTCEEECTTSSEEEEEEEEEEECSSCE--------------------------------------------
T ss_pred             ----ccccceeeEEEcCCCcEEEEeecCCcceeeec--------------------------------------------
Confidence                01223446789999998888876654443311                                            


Q ss_pred             EEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCc
Q 001163          850 ALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKR  929 (1134)
Q Consensus       850 ~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~  929 (1134)
                                ...++.+.+||..+++....+. +...+..++|+| +++++++++.  .+.+||..+++....+..+...
T Consensus       111 ----------~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~-dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~  176 (337)
T d1pbyb_         111 ----------EVQPTRVALYDAETLSRRKAFE-APRQITMLAWAR-DGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWE  176 (337)
T ss_dssp             ----------EECCCEEEEEETTTTEEEEEEE-CCSSCCCEEECT-TSSCEEEESS--SEEEEETTTTEEEEEECSTTTT
T ss_pred             ----------cccccceeeccccCCeEEEecc-ccCCceEEEEcC-CCCEEEEEcC--CcceeeeecCcEEEEeecCCcc
Confidence                      1124455666666666666655 234456666666 6666666543  3556666666655554432211


Q ss_pred             eEEEEEe------------------------eCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEE
Q 001163          930 ITGLAFS------------------------NTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQF  985 (1134)
Q Consensus       930 V~~l~~s------------------------~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~f  985 (1134)
                       ....++                        .+.......+.++.+.+|+..++.........    +.   ..+..+++
T Consensus       177 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~  248 (337)
T d1pbyb_         177 -AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI----MD---VFYFSTAV  248 (337)
T ss_dssp             -TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE----CS---SCEEEEEE
T ss_pred             -ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC----CC---cceEEEEe
Confidence             011111                        12222223344566888998886633221111    11   34678899


Q ss_pred             cCCCCEEEEEeeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCC
Q 001163          986 HLDQTHLLAVHETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINP 1060 (1134)
Q Consensus       986 s~dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~ 1060 (1134)
                      ++++.++++. ++.|++||+.+++.+..+.   +...+.+++|||||++|++++.|++|+|||+.+++.+..+..
T Consensus       249 ~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~---~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         249 NPAKTRAFGA-YNVLESFDLEKNASIKRVP---LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             CTTSSEEEEE-ESEEEEEETTTTEEEEEEE---CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             cccceEEEEc-cccEEEEECCCCcEEEEEc---CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence            9999987654 6899999999999988875   356789999999999999999999999999999999887763

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=7.5e-21  Score=210.90  Aligned_cols=311  Identities=10%  Similarity=-0.003  Sum_probs=210.3

Q ss_pred             EEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeee-cCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEE
Q 001163          424 VMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIE-AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI  502 (1134)
Q Consensus       424 l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~  502 (1134)
                      ++|+++++||++++.|++|.+||+.+++.++   ++. .|...+.+++|+|||+. ++++++.++.|++||+.+++.+..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~---t~~~~~~~~p~~l~~spDG~~-l~v~~~~~~~v~~~d~~t~~~~~~   77 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYK---SCVMPDKFGPGTAMMAPDNRT-AYVLNNHYGDIYGIDLDTCKNTFH   77 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEE---EEECSSCCSSCEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEE---EEEcCCCCCcceEEECCCCCE-EEEEECCCCcEEEEeCccCeeeee
Confidence            5789999999999999999999999998765   344 35667889999999995 457778899999999999999887


Q ss_pred             ecCCCc------CEEEEeccccCCccEEEEec------------CCCcEEEEecCCCCceeeecC--CCCCeeEEEECcC
Q 001163          503 FEGHES------PVYSICPHHKENIQFIFSTA------------TDGKIKAWLYDNLGSRVDYDA--PGHSSTMMAYSAD  562 (1134)
Q Consensus       503 ~~~h~~------~v~~~~~~~~~~~~~l~s~s------------~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~s~~  562 (1134)
                      +.....      .+..++|+  +||.++++++            .++.+.+|+..+......+..  ....+..+.++++
T Consensus        78 ~~~~~~~~~~~~~~~~v~~s--~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (346)
T d1jmxb_          78 ANLSSVPGEVGRSMYSFAIS--PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD  155 (346)
T ss_dssp             EESCCSTTEEEECSSCEEEC--TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTT
T ss_pred             ecccccccccCCceEEEEEe--cCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCC
Confidence            754322      23455664  5567776654            467788998876554333221  2234566777888


Q ss_pred             CCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCC
Q 001163          563 GARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGG  641 (1134)
Q Consensus       563 ~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~  641 (1134)
                      ++.++...       .+.+|+..+++.+..+..+.  ....+.++|++..++... .++.+.+++..             
T Consensus       156 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  213 (346)
T d1jmxb_         156 GSLYVAGP-------DIYKMDVKTGKYTVALPLRN--WNRKGYSAPDVLYFWPHQSPRHEFSMLYTI-------------  213 (346)
T ss_dssp             SCEEEESS-------SEEEECTTTCCEEEEECSTT--CCCTTBCCCBCCCCCCCCCTTCEEEEEEEE-------------
T ss_pred             CEEEEeCC-------cceEEEccCCCEEEEEecCC--CccceEEeccccEEEEEecCCCceEeeeee-------------
Confidence            87766542       28899999988888776554  233445666665443332 23333333210             


Q ss_pred             CCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCc
Q 001163          642 LQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTA  721 (1134)
Q Consensus       642 ~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~  721 (1134)
                            ..+.+....++++..++.+.+|+..++.                                              
T Consensus       214 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------  241 (346)
T d1jmxb_         214 ------ARFKDDKQDPATADLLYGYLSVDLKTGK----------------------------------------------  241 (346)
T ss_dssp             ------EEC-------CCCEEEEEEEEEETTTCC----------------------------------------------
T ss_pred             ------eeeccCceeEeeccCCceEEEEECCCCc----------------------------------------------
Confidence                  0011111222222333334444433221                                              


Q ss_pred             ccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEE
Q 001163          722 PAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHK  801 (1134)
Q Consensus       722 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~  801 (1134)
                                                                                                      
T Consensus       242 --------------------------------------------------------------------------------  241 (346)
T d1jmxb_         242 --------------------------------------------------------------------------------  241 (346)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEec
Q 001163          802 LWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFM  881 (1134)
Q Consensus       802 vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~  881 (1134)
                                                    .......  .+...+..+.+++++.+++...++.|.+||..+++.+..+.
T Consensus       242 ------------------------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~  289 (346)
T d1jmxb_         242 ------------------------------THTQEFA--DLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN  289 (346)
T ss_dssp             ------------------------------EEEEEEE--ECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEE
T ss_pred             ------------------------------eEEEEee--cccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEc
Confidence                                          0000000  14556677888888888888888899999999999998876


Q ss_pred             CCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccC
Q 001163          882 PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQK  928 (1134)
Q Consensus       882 ~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~  928 (1134)
                       +...+.+++|+| ||++|++++.|+.|+|||+.+++.+.+++.+.+
T Consensus       290 -~~~~~~~va~s~-DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g  334 (346)
T d1jmxb_         290 -LDHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGG  334 (346)
T ss_dssp             -CSSCCCEEEECS-SSSCEEEESBSSEEEEEETTTTEEEEEEECSSS
T ss_pred             -CCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECccCCEEEEEECCCC
Confidence             456799999999 899999999999999999999999988875544

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.86  E-value=3.8e-21  Score=213.32  Aligned_cols=330  Identities=7%  Similarity=-0.048  Sum_probs=221.3

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEE-EEECCCcEEEEEccCCceeEEEec
Q 001163          604 VQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLA-VSTNDNGIKILANADGIRLLRTVE  682 (1134)
Q Consensus       604 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~  682 (1134)
                      ++|+++++++++++.++.|.+||+.+++.+.++..+. ...+.+++|+|||++++ ++..++.|.+||+.++ .....+.
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~-~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~-~~~~~~~   79 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD-KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC-KNTFHAN   79 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSS-CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCC-CCCcceEEECCCCCEEEEEECCCCcEEEEeCccC-eeeeeec
Confidence            4688999999999999999999999999999887532 23567999999999875 4557899999999988 4443332


Q ss_pred             cCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCc
Q 001163          683 SRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEP  762 (1134)
Q Consensus       683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~  762 (1134)
                      .....                                                                           
T Consensus        80 ~~~~~---------------------------------------------------------------------------   84 (346)
T d1jmxb_          80 LSSVP---------------------------------------------------------------------------   84 (346)
T ss_dssp             SCCST---------------------------------------------------------------------------
T ss_pred             ccccc---------------------------------------------------------------------------
Confidence            21100                                                                           


Q ss_pred             cceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCC
Q 001163          763 SQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNP  842 (1134)
Q Consensus       763 ~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h  842 (1134)
                                ..+...+..++|+|||+++++++.+.....|....          ....+.+|+..+++...... ....
T Consensus        85 ----------~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~~~-~~~~  143 (346)
T d1jmxb_          85 ----------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV----------KPPRLEVFSTADGLEAKPVR-TFPM  143 (346)
T ss_dssp             ----------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEE----------CCCEEEEEEGGGGGGBCCSE-EEEC
T ss_pred             ----------cccCCceEEEEEecCCCEEEEEecCCcceeeeecc----------CcceEEEEecccceeeeEEE-eeec
Confidence                      00222345688999999888776543332221110          01112333444443322111 0012


Q ss_pred             CCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEe
Q 001163          843 EDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTK  922 (1134)
Q Consensus       843 ~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~  922 (1134)
                      ...+..+.+++++++++.  ++.+.+|++.+++.+..+..+ .....+.++|++..+++.+..++.+.+++..       
T Consensus       144 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  213 (346)
T d1jmxb_         144 PRQVYLMRAADDGSLYVA--GPDIYKMDVKTGKYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTI-------  213 (346)
T ss_dssp             CSSCCCEEECTTSCEEEE--SSSEEEECTTTCCEEEEECST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEE-------
T ss_pred             cCceEEEEecCCCEEEEe--CCcceEEEccCCCEEEEEecC-CCccceEEeccccEEEEEecCCCceEeeeee-------
Confidence            344566777888876654  356899999999999888744 4456677888333344455555666665432       


Q ss_pred             ccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEE
Q 001163          923 LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAI 1002 (1134)
Q Consensus       923 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~i 1002 (1134)
                                ..+.+....++++..+..+.+|++.++......    ..++.   ..+..+.+++++.+++...++.|.+
T Consensus       214 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~v  276 (346)
T d1jmxb_         214 ----------ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQE----FADLT---ELYFTGLRSPKDPNQIYGVLNRLAK  276 (346)
T ss_dssp             ----------EEC-------CCCEEEEEEEEEETTTCCEEEEE----EEECS---SCEEEEEECSSCTTEEEEEESEEEE
T ss_pred             ----------eeeccCceeEeeccCCceEEEEECCCCceEEEE----eeccc---ceeEEEEEeCCCCEEEEecCCeEEE
Confidence                      122334455666777788999999886633211    11111   3477889999999888888889999


Q ss_pred             EeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCC
Q 001163         1003 YEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPT 1061 (1134)
Q Consensus      1003 wd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~ 1061 (1134)
                      ||..+++.+..+..   ...+.+++|||||++|++++.|+.|+|||+.+++.+..+..+
T Consensus       277 ~d~~~~~~~~~~~~---~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p  332 (346)
T d1jmxb_         277 YDLKQRKLIKAANL---DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  332 (346)
T ss_dssp             EETTTTEEEEEEEC---SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             EECCCCcEEEEEcC---CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECC
Confidence            99999998887753   346889999999999999999999999999999999887733

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.86  E-value=5e-19  Score=191.63  Aligned_cols=264  Identities=14%  Similarity=0.075  Sum_probs=204.9

Q ss_pred             CCCCceeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEE
Q 001163          343 DDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVN  422 (1134)
Q Consensus       343 d~~~~~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  422 (1134)
                      |-...+.++++.....+..++|||||++|+++++.++.|.+||+.+++.+..                   +..| ..+.
T Consensus        18 D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~-------------------~~~~-~~~~   77 (301)
T d1l0qa2          18 DVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT-------------------VPAG-SSPQ   77 (301)
T ss_dssp             ETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE-------------------EECS-SSEE
T ss_pred             ECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeee-------------------eecc-cccc
Confidence            3344678888888888999999999998888899999999999999987653                   2233 3578


Q ss_pred             EEEEcCCCCEEEE-EeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeE
Q 001163          423 RVMWSPDGTLFGV-AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY  501 (1134)
Q Consensus       423 ~l~~spd~~~las-~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~  501 (1134)
                      .++|+++++++++ +..++.+.+|+..+++...   .+. +.....+++|+|++.. +++++..++.+.+|+..+++.+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~dg~~-~~~~~~~~~~~~~~~~~~~~~~~  152 (301)
T d1l0qa2          78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG---TVK-TGKSPLGLALSPDGKK-LYVTNNGDKTVSVINTVTKAVIN  152 (301)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEE---EEE-CSSSEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEE
T ss_pred             ccccccccccccccccccceeeecccccceeee---ecc-ccccceEEEeecCCCe-eeeeeccccceeeeeccccceee
Confidence            9999999986655 5567899999999987655   333 4556789999999995 56777889999999999999998


Q ss_pred             EecCCCcCEEEEeccccCCccEEEEecC-CCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEE
Q 001163          502 IFEGHESPVYSICPHHKENIQFIFSTAT-DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLV  580 (1134)
Q Consensus       502 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~  580 (1134)
                      .+..+ ..+..++++++.  ..+++++. ++.+.+|+........... .......++++++++.++.+..+. ....|.
T Consensus       153 ~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~-~~~~v~  227 (301)
T d1l0qa2         153 TVSVG-RSPKGIAVTPDG--TKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDK-YFNTVS  227 (301)
T ss_dssp             EEECC-SSEEEEEECTTS--SEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECS-SCCEEE
T ss_pred             ecccC-CCceEEEeeccc--cceeeecccccccccccccceeeeeccc-ccCCcceeeccccccccccccccc-eeeeee
Confidence            88755 456777776543  55655554 4667777766544443333 334577899999999988776543 355799


Q ss_pred             EEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEE-EEeCCCeEEEEEcCCCceeEEEec
Q 001163          581 EWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFL-AAGDEFMIKFWDMDNVNLLASIDA  638 (1134)
Q Consensus       581 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~  638 (1134)
                      +||..+++.+..+..+.  .+..++|+|||++|+ +++.++.|++||+.+++.+.++..
T Consensus       228 v~D~~t~~~~~~~~~~~--~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         228 MIDTGTNKITARIPVGP--DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV  284 (301)
T ss_dssp             EEETTTTEEEEEEECCS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             eeecCCCeEEEEEcCCC--CEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence            99999999988887654  578999999999875 666899999999999999988864

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=3.4e-19  Score=196.50  Aligned_cols=300  Identities=10%  Similarity=0.102  Sum_probs=212.2

Q ss_pred             cEEEEecCCCcEEEEecCCCCceeeecCC--CCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCC
Q 001163          522 QFIFSTATDGKIKAWLYDNLGSRVDYDAP--GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKR  599 (1134)
Q Consensus       522 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~  599 (1134)
                      +++++++.|++|++||+.+.+....+..+  ...+..++|+|||+++++++.   .++.|.+||+.+++.+..+..+...
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~---~~~~v~v~D~~t~~~~~~~~~~~~~   78 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---KSESLVKIDLVTGETLGRIDLSTPE   78 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---TTTEEEEEETTTCCEEEEEECCBTT
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEEC---CCCeEEEEECCCCcEEEEEecCCCc
Confidence            58999999999999999988877766543  346789999999999865542   2346999999999999888765431


Q ss_pred             ----ceEEEEEcCCCCEEEEEe------------CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECC
Q 001163          600 ----SVGVVQFDTTKNRFLAAG------------DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND  663 (1134)
Q Consensus       600 ----~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d  663 (1134)
                          .+..++|+|+++++++++            .++.+.+||..+++....+...   ..+..++|+|+|+++++++. 
T Consensus        79 ~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~-  154 (337)
T d1pbyb_          79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP---RQITMLAWARDGSKLYGLGR-  154 (337)
T ss_dssp             EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC---SSCCCEEECTTSSCEEEESS-
T ss_pred             ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc---CCceEEEEcCCCCEEEEEcC-
Confidence                244689999999998876            3578999999999988888753   35788999999999998864 


Q ss_pred             CcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCccCccccccc
Q 001163          664 NGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKI  743 (1134)
Q Consensus       664 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  743 (1134)
                       .+.+||..++ .....+..+......                    .+.++                       +    
T Consensus       155 -~~~~~d~~~~-~~~~~~~~~~~~~~~--------------------~~~~~-----------------------~----  185 (337)
T d1pbyb_         155 -DLHVMDPEAG-TLVEDKPIQSWEAET--------------------YAQPD-----------------------V----  185 (337)
T ss_dssp             -SEEEEETTTT-EEEEEECSTTTTTTT--------------------BCCCB-----------------------C----
T ss_pred             -CcceeeeecC-cEEEEeecCCccccc--------------------eecCC-----------------------c----
Confidence             5778999887 444444332211000                    00000                       0    


Q ss_pred             ccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCc
Q 001163          744 ADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQ  823 (1134)
Q Consensus       744 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~  823 (1134)
                             ..+|....              ..+...+.......+.........++.+.+|++.                 
T Consensus       186 -------~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  227 (337)
T d1pbyb_         186 -------LAVWNQHE--------------SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE-----------------  227 (337)
T ss_dssp             -------CCCCCCCT--------------TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT-----------------
T ss_pred             -------ceeecccc--------------ccceeeeeeeeeeeccceeeecccCccEEEEEcC-----------------
Confidence                   00110000              0011122222333444455556666677777544                 


Q ss_pred             ccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEE
Q 001163          824 LWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIG  903 (1134)
Q Consensus       824 ~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g  903 (1134)
                           ++.........  +...+..+++++++.+++++ ++.|++||+.+++.+..+. +...+.+++|+| ||++|+++
T Consensus       228 -----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dG~~l~v~  297 (337)
T d1pbyb_         228 -----TGEMAMREVRI--MDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVP-LPHSYYSVNVST-DGSTVWLG  297 (337)
T ss_dssp             -----TCCEEEEEEEE--CSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSCEEEEE
T ss_pred             -----CCcEEEEEecC--CCcceEEEEecccceEEEEc-cccEEEEECCCCcEEEEEc-CCCCEEEEEECC-CCCEEEEE
Confidence                 33322222222  56778889999999988655 6899999999999999886 567789999999 89999999


Q ss_pred             eCCCcEEEEEcccceEEEeccC
Q 001163          904 MEDSSIQIYNVRVDEVKTKLKG  925 (1134)
Q Consensus       904 ~~dg~i~iwd~~~~~~~~~l~~  925 (1134)
                      +.|+.|+|||+.+++.+.+++.
T Consensus       298 ~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         298 GALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             SBSSEEEEEETTTCCEEEEEEC
T ss_pred             eCCCcEEEEECCCCcEEEEEEC
Confidence            9999999999999998887764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.83  E-value=3.1e-17  Score=183.69  Aligned_cols=334  Identities=10%  Similarity=-0.002  Sum_probs=222.3

Q ss_pred             cccCCCCEEEEEEcCCCCEEEEE-----eCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEE-----
Q 001163          414 SSDYTASVNRVMWSPDGTLFGVA-----YSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTC-----  483 (1134)
Q Consensus       414 ~~~h~~~V~~l~~spd~~~las~-----s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~-----  483 (1134)
                      ...+.+++.+++++|||+.+++.     +.++.|.+||..+++.+.   .+..+..+  .++|+|||+  +|+++     
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~---~~~~~~~~--~~a~SpDG~--~l~va~~~~~   88 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILG---HVNGGFLP--NPVAAHSGS--EFALASTSFS   88 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEE---EEeCCCCc--cEEEcCCCC--EEEEEeecCC
Confidence            35688899999999999998775     234679999999998776   45555543  799999999  45554     


Q ss_pred             -----eCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEE
Q 001163          484 -----GEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMA  558 (1134)
Q Consensus       484 -----s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  558 (1134)
                           +.++.|.+||..+++.+..+..+......+...  +                                   ..+.
T Consensus        89 ~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~--~-----------------------------------~~~~  131 (373)
T d2madh_          89 RIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPY--S-----------------------------------WMNA  131 (373)
T ss_pred             cccccccceEEEEEECCCCcEEEEEecCCcceeEeccC--C-----------------------------------CcEE
Confidence                 346789999999999888777665544433211  1                                   1246


Q ss_pred             ECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEE-EEEeCCCeEEEEEcCCCceeEEEe
Q 001163          559 YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRF-LAAGDEFMIKFWDMDNVNLLASID  637 (1134)
Q Consensus       559 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~  637 (1134)
                      |+++++.++....+.  ...+.+|+....+......     ...++.++|+++.+ ++.+.|+.+.+|+...++......
T Consensus       132 ~s~dg~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~  204 (373)
T d2madh_         132 NTPNNADLLFFQFAA--GPAVGLVVQGGSSDDQLLS-----SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLV  204 (373)
T ss_pred             EEeCCCcEEEEEEcC--CCceEEeeccCCeEEEEec-----cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEe
Confidence            777777666655432  3357788888777665544     34567899998765 567799999999999888776654


Q ss_pred             cCC----CCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccc
Q 001163          638 ADG----GLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVG  713 (1134)
Q Consensus       638 ~~~----~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  713 (1134)
                      ...    .........+++++.+ +..+.++.+.+|+...+.......                                
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~--------------------------------  251 (373)
T d2madh_         205 GAMLTAAQNLLTQPAQANKSGRI-VWPVYSGKILQADISAAGATNKAP--------------------------------  251 (373)
T ss_pred             eeccccCccceeeeEEECCCceE-EEecCCceEEEEEcCCCeEEEEEe--------------------------------
Confidence            321    1112234555655544 456678889999877652111100                                


Q ss_pred             cCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeee
Q 001163          714 TSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILA  793 (1134)
Q Consensus       714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~  793 (1134)
                                                              |+.                  +........+.|.+...++
T Consensus       252 ----------------------------------------~~~------------------~~~~~~~~~~~~~~~~~~~  273 (373)
T d2madh_         252 ----------------------------------------IDA------------------LSGGRKADTWRPGGWQQVA  273 (373)
T ss_pred             ----------------------------------------ecc------------------ccCcEEeeeeccCcceeeE
Confidence                                                    000                  1111222223333332332


Q ss_pred             eccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-CCeEEEEEcc
Q 001163          794 LASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMM  872 (1134)
Q Consensus       794 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~  872 (1134)
                      .+.|+...                                               ..+..++..++... ++.+.+||..
T Consensus       274 ~~~d~~~~-----------------------------------------------~~~~~~~~~~~~~~~~~~v~~~d~~  306 (373)
T d2madh_         274 YLKSSDGI-----------------------------------------------YLLTSEQSAWKLHAAAKEVTSVTGL  306 (373)
T ss_pred             EecCCCeE-----------------------------------------------EEecCCCceEEeecCCCeEEEEECC
Confidence            22222111                                               11223344444444 7889999999


Q ss_pred             CCeEEEEecCCCCCeEEEEEcCCCCc--EEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeC
Q 001163          873 TFKTMTTFMPPPPAATFLAFHPQDNN--IIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNT  938 (1134)
Q Consensus       873 ~~~~~~~~~~~~~~v~~l~~sp~~~~--~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d  938 (1134)
                      +++.+..+. +...+..++|+| ||+  ++++++.|+.|+|||+.+++.+.++..+....+.|++.++
T Consensus       307 t~~~~~~~~-~~~~~~~~a~sp-DG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         307 VGQTSSQIS-LGHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             CCcEEEEec-CCCCeeEEEECC-CCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            999999886 667789999999 776  4578899999999999999999999988888888887654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.80  E-value=1.3e-16  Score=178.54  Aligned_cols=200  Identities=8%  Similarity=-0.033  Sum_probs=136.7

Q ss_pred             cCCCeeEEEEcCCCCeEEEEE----eCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCC
Q 001163          355 QGSAVKSMDFHPVQQILLVVG----TNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG  430 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~g----s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~  430 (1134)
                      +...+.++++||||++++++.    +.++.|.+||..+++.+..                   +..+..  ..++|||||
T Consensus        19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~~~~--~~~a~SpDG   77 (373)
T d2madh_          19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFL--PNPVAAHSG   77 (373)
T ss_pred             CCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE-------------------EeCCCC--ccEEEcCCC
Confidence            667889999999999876653    2346799999999987764                   223332  369999999


Q ss_pred             CEEEEEe----------CCCEEEEEEccCCceeeeeeeeecCCCCE-------EEEEEecCCCceEEEEEeCCCeEEEEE
Q 001163          431 TLFGVAY----------SKHIVHLYTYHGGDELRNHLEIEAHVGSV-------NDLAFSYPNKQLSVVTCGEDRVIKVWD  493 (1134)
Q Consensus       431 ~~las~s----------~dg~v~iwd~~~~~~~~~~~~l~~h~~~V-------~~v~~s~~~~~~~l~s~s~d~~i~iwd  493 (1134)
                      ++|++++          .++.|.+||..+++.+.   .+..+....       ..+.|+++++.+++.....++.+.+|+
T Consensus        78 ~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~  154 (373)
T d2madh_          78 SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA---DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV  154 (373)
T ss_pred             CEEEEEeecCCcccccccceEEEEEECCCCcEEE---EEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEee
Confidence            9999875          35789999999998665   333343332       457899999975555666778999999


Q ss_pred             CCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCC------CCeeEEEECcCCCEEE
Q 001163          494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG------HSSTMMAYSADGARLF  567 (1134)
Q Consensus       494 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~  567 (1134)
                      ..+++......    ...++.+++++. ..+++.+.|+.+.+|+..............      .....+.+++++..++
T Consensus       155 ~~~~~~~~~~~----~~~~~~~s~~g~-~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (373)
T d2madh_         155 QGGSSDDQLLS----SPTCYHIHPGAP-STFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVW  229 (373)
T ss_pred             ccCCeEEEEec----cceeEEEecCCC-cEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEE
Confidence            88877665443    345666665543 466788999999999988766554432211      1233445566655554


Q ss_pred             EEecCCCCCeEEEEEeCCCCe
Q 001163          568 SCGTNKEGESYLVEWNESEGA  588 (1134)
Q Consensus       568 ~~~~~~~~~~~i~~wd~~~~~  588 (1134)
                      ...     +..+.+|+..++.
T Consensus       230 ~~~-----~~~v~~~~~~~~~  245 (373)
T d2madh_         230 PVY-----SGKILQADISAAG  245 (373)
T ss_pred             ecC-----CceEEEEEcCCCe
Confidence            432     2246677766554

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.75  E-value=7.4e-17  Score=179.08  Aligned_cols=205  Identities=13%  Similarity=0.040  Sum_probs=128.3

Q ss_pred             EEEEEcCCCCEEEEEe-----CCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEE--------EeCCCe
Q 001163          422 NRVMWSPDGTLFGVAY-----SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVT--------CGEDRV  488 (1134)
Q Consensus       422 ~~l~~spd~~~las~s-----~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s--------~s~d~~  488 (1134)
                      .-.+.+|||+.+++..     .+..|.+||..+++.+.   ++..+..  ..++|||||+.+++++        ++.|+.
T Consensus         5 ~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~---~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~   79 (355)
T d2bbkh_           5 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIG---MIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDY   79 (355)
T ss_dssp             BCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEE---EEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred             EeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEE---EEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCE
Confidence            3346689999998763     45679999999998766   3444443  3799999999633332        345788


Q ss_pred             EEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEE
Q 001163          489 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFS  568 (1134)
Q Consensus       489 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  568 (1134)
                      |++||+.+++.+..+..+......+                                     ......++|+|++++++.
T Consensus        80 v~v~D~~t~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~s~dg~~~~v  122 (355)
T d2bbkh_          80 VEVFDPVTLLPTADIELPDAPRFLV-------------------------------------GTYPWMTSLTPDGKTLLF  122 (355)
T ss_dssp             EEEECTTTCCEEEEEEETTCCCCCB-------------------------------------SCCGGGEEECTTSSEEEE
T ss_pred             EEEEECCCCCEEEEEecCCcceeec-------------------------------------CCCCceEEEecCCCeeEE
Confidence            9999998888776654332211100                                     112235678999998887


Q ss_pred             EecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEec----CCCCCC
Q 001163          569 CGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA----DGGLQA  644 (1134)
Q Consensus       569 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~  644 (1134)
                      ....  ....+.+|+..+++.+..+.......    .+.......++.+.||...++.............    ..+...
T Consensus       123 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~  196 (355)
T d2bbkh_         123 YQFS--PAPAVGVVDLEGKAFKRMLDVPDCYH----IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL  196 (355)
T ss_dssp             EECS--SSCEEEEEETTTTEEEEEEECCSEEE----EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCB
T ss_pred             ecCC--CCceeeeeecCCCcEeeEEecCCcce----EeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecce
Confidence            6543  24568899999998888776543211    1111122333334444444443333322222211    122334


Q ss_pred             cceEEEcCCCcEEEEEECCCcEEEEEccCC
Q 001163          645 SPCIRFNKEGILLAVSTNDNGIKILANADG  674 (1134)
Q Consensus       645 v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~  674 (1134)
                      +....+.+++..++.++.++.+++|+...+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  226 (355)
T d2bbkh_         197 INHPAYSQKAGRLVWPTYTGKIHQIDLSSG  226 (355)
T ss_dssp             CSCCEEETTTTEEEEEBTTSEEEEEECTTS
T ss_pred             eeeccccCCCCeEEEecCCCeEEEEecCCC
Confidence            566788888888999999999999998765

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=7.7e-16  Score=168.89  Aligned_cols=279  Identities=12%  Similarity=0.162  Sum_probs=186.1

Q ss_pred             EEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEe-CCCEEEEEEccC
Q 001163          371 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY-SKHIVHLYTYHG  449 (1134)
Q Consensus       371 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s-~dg~v~iwd~~~  449 (1134)
                      ++++++.|++|+||++.....+...  +               ...|.+.|.+|+|||||++|++++ .|+.|++|++..
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~--~---------------~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~   68 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLT--Q---------------VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP   68 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEE--E---------------EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEE--E---------------EEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeC
Confidence            5578889999999999765433211  0               235788999999999999996554 589999999987


Q ss_pred             CceeeeeeeeecCCCCEEEEEEecCCCceEEEEEe-CCCeEEEEECCCCceeEE--ecCCCcCEEEEeccccCCccEEEE
Q 001163          450 GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-EDRVIKVWDAVTGTKQYI--FEGHESPVYSICPHHKENIQFIFS  526 (1134)
Q Consensus       450 ~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s-~d~~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s  526 (1134)
                      ............+...+..++|+|||+  +|++++ .++.|.+|+.........  ...+...+.++.++++.  ++++.
T Consensus        69 ~~~~~~~~~~~~~~~~p~~l~~spDg~--~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~--~~~~~  144 (333)
T d1ri6a_          69 DDGALTFAAESALPGSLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDN--RTLWV  144 (333)
T ss_dssp             TTCCEEEEEEEECSSCCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTS--SEEEE
T ss_pred             CCCcEEEeeecccCCCceEEEEcCCCC--EEeecccCCCceeeeccccccceecccccCCCccceEEEeeecc--eeeec
Confidence            654332222334556678899999999  566665 577999998777655433  34566667777775544  55555


Q ss_pred             ec-CCCcEEEEecCCCCceee------ecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCC--Ce--eEEEecC
Q 001163          527 TA-TDGKIKAWLYDNLGSRVD------YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE--GA--VKRTYHG  595 (1134)
Q Consensus       527 ~s-~dg~i~vwd~~~~~~~~~------~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--~~--~~~~~~~  595 (1134)
                      ++ .+..|.+|+.........      ..........++|++++..++......   ....+|+...  ..  .......
T Consensus       145 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~  221 (333)
T d1ri6a_         145 PALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELN---SSVDVWELKDPHGNIECVQTLDM  221 (333)
T ss_dssp             EEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTT---TEEEEEESSCTTSCCEEEEEEEC
T ss_pred             cccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeecccc---CceEEEeecccccceeeeeeeee
Confidence            54 556799999876544332      122344667899999999887765432   2355555432  22  1222211


Q ss_pred             C-----CCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEec-CCCCCCcceEEEcCCCcEEEEEE-CCCcEE
Q 001163          596 L-----GKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDA-DGGLQASPCIRFNKEGILLAVST-NDNGIK  667 (1134)
Q Consensus       596 ~-----~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~sp~~~~l~~~~-~dg~i~  667 (1134)
                      .     .......+++++++++++... .++.+.+|++........+.. ......+..++|+|||++|++++ .++.|+
T Consensus       222 ~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~  301 (333)
T d1ri6a_         222 MPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHIS  301 (333)
T ss_dssp             SCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEE
T ss_pred             eecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEE
Confidence            1     112456688999999877765 678999999876544333221 12234567899999999887765 468999


Q ss_pred             EEEccC
Q 001163          668 ILANAD  673 (1134)
Q Consensus       668 iw~~~~  673 (1134)
                      +|++..
T Consensus       302 v~~id~  307 (333)
T d1ri6a_         302 VYEIVG  307 (333)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            996643

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.74  E-value=2.9e-16  Score=174.20  Aligned_cols=292  Identities=14%  Similarity=0.085  Sum_probs=193.4

Q ss_pred             eeEEEEcCCCCeEEEEE----eCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163          359 VKSMDFHPVQQILLVVG----TNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       359 V~~v~fsp~g~~lla~g----s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la  434 (1134)
                      +.-.+.+|||++++++.    ..+..|.+||..+++.+.+                   +..+  .+..++|||||++|+
T Consensus         4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~g--~~~~~a~SpDg~~l~   62 (355)
T d2bbkh_           4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-------------------IDGG--FLPNPVVADDGSFIA   62 (355)
T ss_dssp             CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-------------------EEEC--SSCEEEECTTSSCEE
T ss_pred             cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEE-------------------EECC--CCCceEEcCCCCEEE
Confidence            34446789999876553    3456799999999987654                   1222  333799999999888


Q ss_pred             EEe----------CCCEEEEEEccCCceeeeeeeeecC----CCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCcee
Q 001163          435 VAY----------SKHIVHLYTYHGGDELRNHLEIEAH----VGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ  500 (1134)
Q Consensus       435 s~s----------~dg~v~iwd~~~~~~~~~~~~l~~h----~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~  500 (1134)
                      +.+          .|+.|++||..+++..........+    ......++|+++++.++++..+.+..+.+||..+++.+
T Consensus        63 v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~  142 (355)
T d2bbkh_          63 HASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFK  142 (355)
T ss_dssp             EEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred             EEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEe
Confidence            653          4789999999999876543221112    12345689999999654555567789999999999998


Q ss_pred             EEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec------CCCCCeeEEEECcCCCEEEEEecCCC
Q 001163          501 YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD------APGHSSTMMAYSADGARLFSCGTNKE  574 (1134)
Q Consensus       501 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~~~~  574 (1134)
                      ..+..+..... ..   ... ...++.+.|+...++............      .+...+....+++++..++.++.+  
T Consensus       143 ~~~~~~~~~~~-~~---~~~-~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  215 (355)
T d2bbkh_         143 RMLDVPDCYHI-FP---TAP-DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYT--  215 (355)
T ss_dssp             EEEECCSEEEE-EE---EET-TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTT--
T ss_pred             eEEecCCcceE-ee---cCC-cceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCC--
Confidence            88775443221 11   111 233444455555555443332222211      122245556778888888877643  


Q ss_pred             CCeEEEEEeCCCCeeEE--EecCCCC---------CceEEEEEcCCCCEEEEEeCC----------CeEEEEEcCCCcee
Q 001163          575 GESYLVEWNESEGAVKR--TYHGLGK---------RSVGVVQFDTTKNRFLAAGDE----------FMIKFWDMDNVNLL  633 (1134)
Q Consensus       575 ~~~~i~~wd~~~~~~~~--~~~~~~~---------~~v~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~~  633 (1134)
                        ..+++|+...++...  ....+..         .....+++++++..++....+          ..|.+||..+++.+
T Consensus       216 --~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~  293 (355)
T d2bbkh_         216 --GKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL  293 (355)
T ss_dssp             --SEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE
T ss_pred             --CeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEE
Confidence              369999998875432  1211110         122347899999988876533          46999999999998


Q ss_pred             EEEecCCCCCCcceEEEcCCCc--EEEEEECCCcEEEEEccCCceeEEEeccC
Q 001163          634 ASIDADGGLQASPCIRFNKEGI--LLAVSTNDNGIKILANADGIRLLRTVESR  684 (1134)
Q Consensus       634 ~~~~~~~~~~~v~~v~~sp~~~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~  684 (1134)
                      ..+...   ..+.+++|+|||+  ++++++.|+.|++||..++ +.++.+.+.
T Consensus       294 ~~~~~~---~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg-~~~~~i~~~  342 (355)
T d2bbkh_         294 AKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG-EELRSVNQL  342 (355)
T ss_dssp             EEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEEECCC
T ss_pred             EEecCC---CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCC-CEEEEEeCc
Confidence            888643   3478999999997  4566777999999999999 667777543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=3.5e-15  Score=163.50  Aligned_cols=278  Identities=12%  Similarity=0.128  Sum_probs=185.7

Q ss_pred             CCCCcccccCCCCC-ceeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccc
Q 001163          333 QSLGQSSYSTDDLP-KTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQA  411 (1134)
Q Consensus       333 ~~~~l~~~~~d~~~-~~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (1134)
                      .+..+..|..+... .+.++.++|.+.|.+++|||||++|++++..|+.|.+|++..+........              
T Consensus        12 ~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~--------------   77 (333)
T d1ri6a_          12 ESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA--------------   77 (333)
T ss_dssp             GGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE--------------
T ss_pred             CCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEee--------------
Confidence            33344455544332 356777889999999999999999888888899999999987653321100              


Q ss_pred             cccccCCCCEEEEEEcCCCCEEEEEeC-CCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEe-CCCeE
Q 001163          412 SLSSDYTASVNRVMWSPDGTLFGVAYS-KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-EDRVI  489 (1134)
Q Consensus       412 ~~~~~h~~~V~~l~~spd~~~las~s~-dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s-~d~~i  489 (1134)
                        ...+...+.+++|+|||++|++++. ++.|.+|+......... .....+...+.++.|+|+++.  ++.++ .+..|
T Consensus        78 --~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~v~~s~d~~~--~~~~~~~~~~i  152 (333)
T d1ri6a_          78 --ESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV-VDVVEGLDGCHSANISPDNRT--LWVPALKQDRI  152 (333)
T ss_dssp             --EEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEE-EEEECCCTTBCCCEECTTSSE--EEEEEGGGTEE
T ss_pred             --ecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceec-ccccCCCccceEEEeeeccee--eecccccccee
Confidence              1234456778999999999999875 67899999987764432 245567778899999999994  45444 56689


Q ss_pred             EEEECCCCceeEE------ecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceee----e------cCCCCC
Q 001163          490 KVWDAVTGTKQYI------FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD----Y------DAPGHS  553 (1134)
Q Consensus       490 ~iwd~~~~~~~~~------~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~----~------~~~~~~  553 (1134)
                      .+|+..+......      ..........++|++... ..+.+....+...+|+.........    .      ......
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (333)
T d1ri6a_         153 CLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQ-YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRW  231 (333)
T ss_dssp             EEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSS-EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCC
T ss_pred             eEEEeccCCcceeeeceeeeeecCCCccEEEEeccce-eEEeeccccCceEEEeecccccceeeeeeeeeeecCCCcccc
Confidence            9999876543321      122344567788765442 3344555667788888764433221    1      011235


Q ss_pred             eeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecC--CCCCceEEEEEcCCCCEEEEEe-CCCeEEEE--EcC
Q 001163          554 STMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG--LGKRSVGVVQFDTTKNRFLAAG-DEFMIKFW--DMD  628 (1134)
Q Consensus       554 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw--d~~  628 (1134)
                      ...+++++++++++.....   ...+.+|++...........  .....+..++|+|||++|++++ .++.|.+|  |..
T Consensus       232 ~~~~~~s~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~  308 (333)
T d1ri6a_         232 AADIHITPDGRHLYACDRT---ASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGE  308 (333)
T ss_dssp             EEEEEECTTSSEEEEEETT---TTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETT
T ss_pred             ceeEEEecccCceeeeccc---CCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECC
Confidence            6678899999988877643   34578887765432222221  1222567799999999988776 56899998  556


Q ss_pred             CCcee
Q 001163          629 NVNLL  633 (1134)
Q Consensus       629 ~~~~~  633 (1134)
                      +|++.
T Consensus       309 tG~l~  313 (333)
T d1ri6a_         309 QGLLH  313 (333)
T ss_dssp             TTEEE
T ss_pred             CCcEE
Confidence            67553

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.64  E-value=4.2e-14  Score=163.07  Aligned_cols=219  Identities=13%  Similarity=0.101  Sum_probs=138.4

Q ss_pred             EEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeC--
Q 001163          361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS--  438 (1134)
Q Consensus       361 ~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~--  438 (1134)
                      .+.|.++++++ .  ..|+.|.+||+.+++....              +....+..|...|.++.|||||++||.++.  
T Consensus        21 ~~~W~~d~~~~-~--~~~~~~~~~~~~t~~~~~~--------------~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~   83 (470)
T d2bgra1          21 SLRWISDHEYL-Y--KQENNILVFNAEYGNSSVF--------------LENSTFDEFGHSINDYSISPDGQFILLEYNYV   83 (470)
T ss_dssp             CCEECSSSEEE-E--ESSSCEEEEETTTCCEEEE--------------ECTTTTTTSSSCCCEEEECTTSSEEEEEEEEE
T ss_pred             CCEeCCCCEEE-E--EcCCcEEEEECCCCCEEEE--------------EchhhhhhccCccceeEECCCCCEEEEEECCc
Confidence            57899999844 4  4578899999999976432              111235678889999999999999998854  


Q ss_pred             -------CCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCC----
Q 001163          439 -------KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE----  507 (1134)
Q Consensus       439 -------dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~----  507 (1134)
                             ++.+.|||+.+++..    .+..|...+..+.|||||+  .++.. .++.+.+|+..+++..+....+.    
T Consensus        84 ~~~r~s~~~~~~l~d~~~~~~~----~l~~~~~~~~~~~~SPDG~--~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~  156 (470)
T d2bgra1          84 KQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDII  156 (470)
T ss_dssp             ECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTE
T ss_pred             ceeeeccCceEEEEECCCCccc----ccccCCccccccccccCcc--eeeEe-ecccceEEECCCCceeeeeeccCCCcc
Confidence                   567899999998743    4778999999999999999  46654 56799999999988766443221    


Q ss_pred             --------------cCEEEEeccccCCccEEEEecCCCc-EEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecC
Q 001163          508 --------------SPVYSICPHHKENIQFIFSTATDGK-IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN  572 (1134)
Q Consensus       508 --------------~~v~~~~~~~~~~~~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~  572 (1134)
                                    +....+.|  ++||+.|+....|.+ +..|.+......   .........+.+...+..       
T Consensus       157 ~~g~~d~~~~~~~~~~~~~~~w--SPDGk~ia~~~~d~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~-------  224 (470)
T d2bgra1         157 YNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDE---SLQYPKTVRVPYPKAGAV-------  224 (470)
T ss_dssp             EESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCST---TCSSCEEEEEECCBTTSC-------
T ss_pred             cccccceeeeeeecCCccccEE--CCCCCccceeEecCCcCceEEEEeeccC---CCCCCeeeeecccccccc-------
Confidence                          12233445  456688888765544 555544321110   001112222232222211       


Q ss_pred             CCCCeEEEEEeCCCCeeEEEecC----------CCCCceEEEEEcCCCCEEEEE
Q 001163          573 KEGESYLVEWNESEGAVKRTYHG----------LGKRSVGVVQFDTTKNRFLAA  616 (1134)
Q Consensus       573 ~~~~~~i~~wd~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~  616 (1134)
                       .....+.+|++..+........          .....+..+.|.+++..++..
T Consensus       225 -~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  277 (470)
T d2bgra1         225 -NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQW  277 (470)
T ss_dssp             -CCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEE
T ss_pred             -CCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEE
Confidence             1234578888876643322111          112245668888888665553

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.55  E-value=1.9e-13  Score=151.79  Aligned_cols=286  Identities=10%  Similarity=-0.015  Sum_probs=189.4

Q ss_pred             CCeeEEEEcCCCCeEE--EEEeCCCc--EEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCE
Q 001163          357 SAVKSMDFHPVQQILL--VVGTNMGD--VMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL  432 (1134)
Q Consensus       357 ~~V~~v~fsp~g~~ll--a~gs~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~  432 (1134)
                      +....++.+++++...  +....+|+  |.+||..+++.+..                   ..++...  .++|+|||+.
T Consensus        20 g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~-------------------~~~~~~~--~~a~spDg~~   78 (368)
T d1mdah_          20 GSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGH-------------------SLGAFLS--LAVAGHSGSD   78 (368)
T ss_dssp             CCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECTTC--EEEECTTSSC
T ss_pred             CCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEE-------------------EeCCCCC--cceECCCCCE
Confidence            3445566788888543  33444454  67779998887653                   2333333  5899999999


Q ss_pred             EEEEe----------CCCEEEEEEccCCceeeeeeeeecCC-------CCEEEEEEecCCCceEEEEEeCCCeEEEEECC
Q 001163          433 FGVAY----------SKHIVHLYTYHGGDELRNHLEIEAHV-------GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV  495 (1134)
Q Consensus       433 las~s----------~dg~v~iwd~~~~~~~~~~~~l~~h~-------~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~  495 (1134)
                      |++.+          .|+.|.+||..+++.+..   +..|.       .....++|+|||+. ++++...++.+.+||+.
T Consensus        79 i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~---i~~p~~~~~~~g~~p~~~a~SpDGk~-l~va~~~~~~v~~~d~~  154 (368)
T d1mdah_          79 FALASTSFARSAKGKRTDYVEVFDPVTFLPIAD---IELPDAPRFSVGPRVHIIGNCASSAC-LLFFLFGSSAAAGLSVP  154 (368)
T ss_dssp             EEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE---EEETTSCSCCBSCCTTSEEECTTSSC-EEEEECSSSCEEEEEET
T ss_pred             EEEEcccCccccccccCCeEEEEECCCCcEeee---ecCCccceecccCCccceEECCCCCE-EEEEeCCCCeEEEEECC
Confidence            98865          377899999999886653   32222       12346899999995 33444567999999999


Q ss_pred             CCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec------CCCCCeeEEEECcCCCEEEEE
Q 001163          496 TGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD------APGHSSTMMAYSADGARLFSC  569 (1134)
Q Consensus       496 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~  569 (1134)
                      +++.+..+..+.....    .+.+. ..++..+.||.+.+|++..........      .+...+....+.+++..+...
T Consensus       155 ~~~~~~~~~~~~~~~~----~~~~~-~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  229 (368)
T d1mdah_         155 GASDDQLTKSASCFHI----HPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV  229 (368)
T ss_dssp             TTEEEEEEECSSCCCC----EEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB
T ss_pred             CCcEeEEeeccCcceE----ccCCC-ceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec
Confidence            9999988876554321    12222 567778889999999887655443322      222345567788887766654


Q ss_pred             ecCCCCCeEEEEEeCCCCeeEEEec--CCCC---------CceEEEEEcCCCCEEEEEeCC---------CeEEEEEcCC
Q 001163          570 GTNKEGESYLVEWNESEGAVKRTYH--GLGK---------RSVGVVQFDTTKNRFLAAGDE---------FMIKFWDMDN  629 (1134)
Q Consensus       570 ~~~~~~~~~i~~wd~~~~~~~~~~~--~~~~---------~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~  629 (1134)
                      +.      .+++++...+.......  ....         .....+++++++..++....+         ..|.+||..+
T Consensus       230 ~~------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t  303 (368)
T d1mdah_         230 AS------SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV  303 (368)
T ss_dssp             SS------CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS
T ss_pred             CC------CEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCC
Confidence            21      25566665554333221  1110         012347889998887765422         3599999999


Q ss_pred             CceeEEEecCCCCCCcceEEEcCCCc--EEEEEECCCcEEEEEccCCceeEEEec
Q 001163          630 VNLLASIDADGGLQASPCIRFNKEGI--LLAVSTNDNGIKILANADGIRLLRTVE  682 (1134)
Q Consensus       630 ~~~~~~~~~~~~~~~v~~v~~sp~~~--~l~~~~~dg~i~iw~~~~~~~~~~~~~  682 (1134)
                      ++.+..+...   ..+..++|+|||+  +++++..++.|++||..++ +.++.+.
T Consensus       304 ~~~~~~~~~~---~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg-k~~~~i~  354 (368)
T d1mdah_         304 GQTSGPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVE  354 (368)
T ss_dssp             CCEEECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECC
T ss_pred             CcEeEEecCC---CceeEEEECCCCCEEEEEEeCCCCeEEEEECCCC-CEEEEEE
Confidence            9988877642   3578899999996  3456677899999999998 5666654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.53  E-value=7.4e-13  Score=146.91  Aligned_cols=309  Identities=11%  Similarity=-0.033  Sum_probs=193.3

Q ss_pred             CeeEEEECcCCCEEEE-EecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe----------CCCe
Q 001163          553 SSTMMAYSADGARLFS-CGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG----------DEFM  621 (1134)
Q Consensus       553 ~v~~~~~s~~~~~l~~-~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~  621 (1134)
                      ....++..++++.... .....++...+++||..+++.+.....+..   ..++|+|||+.+++.+          .|+.
T Consensus        21 ~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~---~~~a~spDg~~i~~~~~~~~~~~~g~~d~~   97 (368)
T d1mdah_          21 SSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL---SLAVAGHSGSDFALASTSFARSAKGKRTDY   97 (368)
T ss_dssp             CCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT---CEEEECTTSSCEEEEEEEETTTTSSSEEEE
T ss_pred             CccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCC---CcceECCCCCEEEEEcccCccccccccCCe
Confidence            4445566788886433 233445567799999999999998877654   2588999999888764          3678


Q ss_pred             EEEEEcCCCceeEEEecCCCC-----CCcceEEEcCCCcEEEEEE-CCCcEEEEEccCCceeEEEeccCcccccccchhh
Q 001163          622 IKFWDMDNVNLLASIDADGGL-----QASPCIRFNKEGILLAVST-NDNGIKILANADGIRLLRTVESRTFDASRVASAA  695 (1134)
Q Consensus       622 i~iwd~~~~~~~~~~~~~~~~-----~~v~~v~~sp~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  695 (1134)
                      |.+||..+++++..+..+...     .....++|+|||++|+++. .++.+.+||+.++ .....+..+.....      
T Consensus        98 v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~------  170 (368)
T d1mdah_          98 VEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGA-SDDQLTKSASCFHI------  170 (368)
T ss_dssp             EEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTT-EEEEEEECSSCCCC------
T ss_pred             EEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCC-cEeEEeeccCcceE------
Confidence            999999999999888654221     1235799999999988776 5799999999988 55555443221100      


Q ss_pred             hhcccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccc
Q 001163          696 IVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLT  775 (1134)
Q Consensus       696 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~  775 (1134)
                                       .+                      ......+..+.|+++..++............ ......+
T Consensus       171 -----------------~~----------------------~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~-~~~~~~~  210 (368)
T d1mdah_         171 -----------------HP----------------------GAAATHYLGSCPASLAASDLAAAPAAAGIVG-AQCTGAQ  210 (368)
T ss_dssp             -----------------EE----------------------EETTEEECCCCTTSCEEEECCSSCCCCEECC-CCSCTTS
T ss_pred             -----------------cc----------------------CCCceEEEEcCCCCEEEEEecCCceeeeeee-ccccccc
Confidence                             00                      0112334445566666666554322211111 0111123


Q ss_pred             cccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCC
Q 001163          776 AMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKND  855 (1134)
Q Consensus       776 ~~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg  855 (1134)
                      ...+....+.+++..+...+  +.+.++++....            +.+++...+........+ ........+++++++
T Consensus       211 ~~~~~~~~~~~~g~~~~~~~--~~v~~~~~~~~~------------~~~~~~~~~~~~~~~~~~-~~~~g~~~~a~~~~~  275 (368)
T d1mdah_         211 NCSSQAAQANYPGMLVWAVA--SSILQGDIPAAG------------ATMKAAIDGNESGRKADN-FRSAGFQMVAKLKNT  275 (368)
T ss_dssp             CBCSCCEEETTTTEEEECBS--SCCEEEECCSSC------------CEEECCCCSSCTHHHHTT-EEECSSSCEEEETTT
T ss_pred             ccceeecccccCcEEEEecC--CCEEEEeecCCc------------eEEEeecccccceeeeee-ecCCCceeEEEcCCC
Confidence            44455667778877665544  334444443221            112222221111000000 011223458899999


Q ss_pred             CeEEEee--C--------CeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCc--EEEEEeCCCcEEEEEcccceEEEec
Q 001163          856 SYVMSAS--G--------GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN--IIAIGMEDSSIQIYNVRVDEVKTKL  923 (1134)
Q Consensus       856 ~~la~~s--d--------g~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~--~la~g~~dg~i~iwd~~~~~~~~~l  923 (1134)
                      ..+++..  +        ..|.+||..+++.+.++. +...+..++|+| |++  +++++..|+.|+|||..+++.+.++
T Consensus       276 ~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~ly~s~~~~~~v~v~D~~tgk~~~~i  353 (368)
T d1mdah_         276 DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQDQSSV  353 (368)
T ss_dssp             TEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECC-SSSCEEEEEETTTTEEEEEESSSCEEEEEC
T ss_pred             CEEEEEecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEECC-CCCEEEEEEeCCCCeEEEEECCCCCEEEEE
Confidence            8776653  1        259999999999888776 345688999999 665  4567778999999999999999998


Q ss_pred             cCccC
Q 001163          924 KGHQK  928 (1134)
Q Consensus       924 ~~h~~  928 (1134)
                      +....
T Consensus       354 ~~g~~  358 (368)
T d1mdah_         354 ELDKG  358 (368)
T ss_dssp             CCCSC
T ss_pred             ECCCC
Confidence            86543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.50  E-value=3.1e-14  Score=155.52  Aligned_cols=329  Identities=10%  Similarity=0.018  Sum_probs=202.6

Q ss_pred             eEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEE
Q 001163          478 LSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMM  557 (1134)
Q Consensus       478 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~  557 (1134)
                      ..++|++.+|.|++||+.+++.++++.-         |++.+.  . ..|..+.+.+++.  ..........|.......
T Consensus        12 y~f~Sgg~sG~V~V~dlpS~r~l~~IpV---------fspd~~--~-g~g~~~es~~vl~--~~~~~~~gd~hhP~~s~t   77 (441)
T d1qnia2          12 YGFWSGGHQGEVRVLGVPSMRELMRIPV---------FNVDSA--T-GWGITNESKEILG--GDQQYLNGDCHHPHISMT   77 (441)
T ss_dssp             EEEEECBTTCCEEEEEETTTEEEEEECS---------SSBCTT--T-CTTTSHHHHHHHC--SSSCCSCCCBCCCEEEEE
T ss_pred             EEEEeCCCCCcEEEEeCCCCcEEEEEEe---------EcCCCC--E-EEEECCccceEEe--cccccccCcccCCCccee
Confidence            3688999999999999999999988742         444331  1 1122222222211  111111112233344455


Q ss_pred             EECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCC--EEEEEeCCC---------------
Q 001163          558 AYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN--RFLAAGDEF---------------  620 (1134)
Q Consensus       558 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg---------------  620 (1134)
                      ..+|||++|++...   .+..|.++|+.+++....+..........++|+|+++  +++..+++.               
T Consensus        78 ~gtpDGr~lfV~d~---~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~  154 (441)
T d1qnia2          78 DGRYDGKYLFINDK---ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNS  154 (441)
T ss_dssp             TTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGE
T ss_pred             cccCCCCEEEEEcC---CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccc
Confidence            56899999988753   3457999999999988877655445788999999997  454444432               


Q ss_pred             --eEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCc-EEEEEccCCceeEEEeccCcccccccchhhhh
Q 001163          621 --MIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNG-IKILANADGIRLLRTVESRTFDASRVASAAIV  697 (1134)
Q Consensus       621 --~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  697 (1134)
                        .+..+|..+.+....+...+   ....+.++|+|+++++.+.+.. +..++..+.. ..                   
T Consensus       155 ~~~~~~iD~~t~~v~~qI~v~~---~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~-~~-------------------  211 (441)
T d1qnia2         155 YTMFTAIDAETMDVAWQVIVDG---NLDNTDADYTGKYATSTCYNSERAVDLAGTMRN-DR-------------------  211 (441)
T ss_dssp             EEEEEEEETTTCSEEEEEEESS---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCS-SB-------------------
T ss_pred             cceEEeecCccceeeEEEecCC---CccceEECCCCCEEEEEecCCCceEEEeccCcc-eE-------------------
Confidence              24568888888887776543   4678999999999988876532 2111111110 00                   


Q ss_pred             cccccccccccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccc
Q 001163          698 KAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAM  777 (1134)
Q Consensus       698 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~  777 (1134)
                                                                         ..+.+.+.                     
T Consensus       212 ---------------------------------------------------d~i~v~n~---------------------  219 (441)
T d1qnia2         212 ---------------------------------------------------DWVVVFNV---------------------  219 (441)
T ss_dssp             ---------------------------------------------------CEEEEEEH---------------------
T ss_pred             ---------------------------------------------------EEEEeCCc---------------------
Confidence                                                               01111111                     


Q ss_pred             cEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCe
Q 001163          778 RVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSY  857 (1134)
Q Consensus       778 ~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~  857 (1134)
                       -..+.++|+|+++..+ .++.+.++...                      ....+.. ++.   ......+.++|||++
T Consensus       220 -p~~~~~~~dGk~~~v~-~~~v~vvd~~~----------------------~~~v~~~-IPv---gksPhGv~vSPDGky  271 (441)
T d1qnia2         220 -ERIAAAVKAGNFKTIG-DSKVPVVDGRG----------------------ESEFTRY-IPV---PKNPHGLNTSPDGKY  271 (441)
T ss_dssp             -HHHHHHHHTTCCBCCT-TCCCCEEECSS----------------------SCSSEEE-ECC---BSSCCCEEECTTSCE
T ss_pred             -cceEEEecCCCEEEeC-CCCcEEEEccc----------------------CCceEEE-EeC---CCCccCceECCCCCE
Confidence             0122456788866554 35555555322                      1111111 121   233567999999999


Q ss_pred             EEEee--CCeEEEEEccCCeE-----------EEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccc-------
Q 001163          858 VMSAS--GGKISLFNMMTFKT-----------MTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD-------  917 (1134)
Q Consensus       858 la~~s--dg~i~lwd~~~~~~-----------~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~-------  917 (1134)
                      +++++  +++|.+||+++.+.           +.-.....-.....+|++ +|..+.+...|.+|..|++...       
T Consensus       272 l~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~-~g~~yts~~~ds~v~kw~~~~~~~~~~~~  350 (441)
T d1qnia2         272 FIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDG-RGNAYTTLFIDSQVCKWNIADAIKHYNGD  350 (441)
T ss_dssp             EEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEHHHHHHHHTTC
T ss_pred             EEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecC-CceEEEcccccceEEEeccchhhhhhccC
Confidence            87765  79999999865321           111111112245568999 8888889999999999998521       


Q ss_pred             ---eEEEec-----cCccCceEEEEEeeCCCEEEEEeC
Q 001163          918 ---EVKTKL-----KGHQKRITGLAFSNTLNVLVSSGA  947 (1134)
Q Consensus       918 ---~~~~~l-----~~h~~~V~~l~~s~d~~~l~s~s~  947 (1134)
                         ..+..+     .+|...+.+.+++|||++|++++.
T Consensus       351 ~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k  388 (441)
T d1qnia2         351 RVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSK  388 (441)
T ss_dssp             CCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEES
T ss_pred             CCceeEeccccccCCCCCccccccccCCCCcEEEecCc
Confidence               233333     578777788889999999999943

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.50  E-value=5.6e-12  Score=144.92  Aligned_cols=152  Identities=11%  Similarity=0.067  Sum_probs=108.1

Q ss_pred             EeccccCCccEEEEecCCCcEEEEecCCCCceeeecC-----CCCCeeEEEECcCCCEEEEEecCC-----CCCeEEEEE
Q 001163          513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA-----PGHSSTMMAYSADGARLFSCGTNK-----EGESYLVEW  582 (1134)
Q Consensus       513 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~~~-----~~~~~i~~w  582 (1134)
                      +.|.  +++.++..  .|+.+.+||+.+++....+..     +...|.++.|||||++|+..+...     +....+++|
T Consensus        22 ~~W~--~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          22 LRWI--SDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CEEC--SSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             CEeC--CCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            4453  45566653  478899999998877654433     345789999999999999876321     224568999


Q ss_pred             eCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCC----------------CCCCcc
Q 001163          583 NESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG----------------GLQASP  646 (1134)
Q Consensus       583 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------------~~~~v~  646 (1134)
                      |+.+++.. .+..+.. .+..+.|+|||+.++... ++.+++|+..+++.........                ......
T Consensus        98 d~~~~~~~-~l~~~~~-~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~  174 (470)
T d2bgra1          98 DLNKRQLI-TEERIPN-NTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS  174 (470)
T ss_dssp             ETTTTEEC-CSSCCCT-TEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred             ECCCCccc-ccccCCc-cccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcc
Confidence            99998754 4555555 788999999999999865 5789999999887665432211                122346


Q ss_pred             eEEEcCCCcEEEEEECCCc-EEEEEc
Q 001163          647 CIRFNKEGILLAVSTNDNG-IKILAN  671 (1134)
Q Consensus       647 ~v~~sp~~~~l~~~~~dg~-i~iw~~  671 (1134)
                      .+.|+|||+.|+....|.+ +..|.+
T Consensus       175 ~~~wSPDGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         175 ALWWSPNGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             CEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred             ccEECCCCCccceeEecCCcCceEEE
Confidence            7889999999998876543 555443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.45  E-value=4.5e-14  Score=154.24  Aligned_cols=292  Identities=12%  Similarity=-0.013  Sum_probs=185.9

Q ss_pred             ccccEEEEEEecCCceeeeec-cCCeEEeeecCCCCCCcccccccCCCCcccCCCCCccccc-CCCCCCCCCCeeEEEEc
Q 001163          775 TAMRVSRLIYTNSGLAILALA-SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTN-DISDTNPEDAVPCFALS  852 (1134)
Q Consensus       775 ~~~~i~~l~~spdg~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~h~~~v~~v~~s  852 (1134)
                      |........++|||+++++.. .+..|.++|+.                      +++...+ .++   +...+..++|+
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~----------------------t~k~~~ii~iP---~g~gphgi~~s  124 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLD----------------------IMKTDKITHIP---NVQAIHGLRLQ  124 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETT----------------------TTEEEEEEECT---TCCCEEEEEEC
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECC----------------------CCcEeeEEecC---CCCCccceEEe
Confidence            555666677789999997665 57888888654                      3332221 121   46778999999


Q ss_pred             CCCC--eEEEeeCCeE------------------EEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCC-cEEE
Q 001163          853 KNDS--YVMSASGGKI------------------SLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDS-SIQI  911 (1134)
Q Consensus       853 ~dg~--~la~~sdg~i------------------~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg-~i~i  911 (1134)
                      |||+  |++..++..+                  ..+|..+.+...++.. .+....++|+| +|+++++.+.+. .+..
T Consensus       125 pdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v-~~~p~~v~~sp-dGk~a~vt~~nse~~~~  202 (441)
T d1qnia2         125 KVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIV-DGNLDNTDADY-TGKYATSTCYNSERAVD  202 (441)
T ss_dssp             CSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEE-SSCCCCEEECS-SSSEEEEEESCTTCCSS
T ss_pred             ccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEec-CCCccceEECC-CCCEEEEEecCCCceEE
Confidence            9998  4444444333                  5588888887777653 35678899999 888888877653 4444


Q ss_pred             EEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCE
Q 001163          912 YNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTH  991 (1134)
Q Consensus       912 wd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~  991 (1134)
                      ++..+.+....+.... .-..++++++|+++..+ .++.+.+++....+    ....++.+..     ...+.++|||++
T Consensus       203 id~~t~~~~d~i~v~n-~p~~~~~~~dGk~~~v~-~~~v~vvd~~~~~~----v~~~IPvgks-----PhGv~vSPDGky  271 (441)
T d1qnia2         203 LAGTMRNDRDWVVVFN-VERIAAAVKAGNFKTIG-DSKVPVVDGRGESE----FTRYIPVPKN-----PHGLNTSPDGKY  271 (441)
T ss_dssp             HHHHTCSSBCEEEEEE-HHHHHHHHHTTCCBCCT-TCCCCEEECSSSCS----SEEEECCBSS-----CCCEEECTTSCE
T ss_pred             EeccCcceEEEEEeCC-ccceEEEecCCCEEEeC-CCCcEEEEcccCCc----eEEEEeCCCC-----ccCceECCCCCE
Confidence            4444443332222111 11234567899987654 46777887765533    1223343333     466999999999


Q ss_pred             EEEE--eeceEEEEeCCCcccc--------eeeccC-CCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCc-------
Q 001163          992 LLAV--HETQIAIYEAPKLECL--------KQFVPR-EASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLR------- 1053 (1134)
Q Consensus       992 l~~~--~d~~i~iwd~~~~~~~--------~~~~~~-~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~------- 1053 (1134)
                      ++++  .+++|.|||+.+.+..        ..+... .-.-.....+|+++|..+.+...|.+|..|++....       
T Consensus       272 l~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~  351 (441)
T d1qnia2         272 FIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDR  351 (441)
T ss_dssp             EEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCC
T ss_pred             EEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCC
Confidence            9885  7899999998764421        111100 012234567899999989999999999999985221       


Q ss_pred             ---ceeecCCCcccCCCCCCCceeEEEEecCCCCCEEEEE---ecCCc----------EEEEeCCCCCCCcc
Q 001163         1054 ---LRCRINPTAYLPTNPSLRVYPLVIAGNPTDPNQFALG---LTDGG----------VYIIEPLEAEGRWG 1109 (1134)
Q Consensus      1054 ---~~~~~~~~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~---~~Dg~----------v~vW~~~~~~~~~~ 1109 (1134)
                         .+.++.  .+.-.||...+.+.  +++| ||++|+++   |.|..          -.+.|++..+++..
T Consensus       352 ~~~v~~~~~--v~y~~GH~~~~~~~--t~~p-dGk~l~s~~k~s~dr~~~~g~~~~~~~q~~~i~~~~~~~~  418 (441)
T d1qnia2         352 VNYIRQKLD--VQYQPGHNHASLTE--SRDA-DGKWLVVLSKFSKDRFLPVGPLHPENDQLIDISGEEMKLV  418 (441)
T ss_dssp             CCCEEEEEE--CSSCEEEEEETTTT--STTC-CCCEEEEEESCCGGGSCCCSSSCCEEEEEEECSSSSCEEE
T ss_pred             CceeEeccc--cccCCCCCcccccc--ccCC-CCcEEEecCccccccCcCCCCCCCccceeEEecCCeEEEE
Confidence               111111  11223666666555  7889 89999999   66754          46788887665543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.16  E-value=3e-08  Score=108.09  Aligned_cols=160  Identities=13%  Similarity=0.131  Sum_probs=100.3

Q ss_pred             CeeEEEEcCCCCeEEEee--CCeEEEEEccC-CeEE--EEec--CCCCCeEEEEEcCCCCcEEE-EEeCCCcEEEEEccc
Q 001163          845 AVPCFALSKNDSYVMSAS--GGKISLFNMMT-FKTM--TTFM--PPPPAATFLAFHPQDNNIIA-IGMEDSSIQIYNVRV  916 (1134)
Q Consensus       845 ~v~~v~~s~dg~~la~~s--dg~i~lwd~~~-~~~~--~~~~--~~~~~v~~l~~sp~~~~~la-~g~~dg~i~iwd~~~  916 (1134)
                      .+.+++|+|||+++++++  .++|.+|+... +...  ....  ........++|+| +++++. +...+++|.+|++..
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEecC
Confidence            467889999999888887  35788887643 2222  2221  2345789999999 777664 455678999999876


Q ss_pred             ceEE-----Eecc--------------CccCceEEEEEeeCCCEEEEEeC-C-----CcEEEEECCCCcccc-ceeeeec
Q 001163          917 DEVK-----TKLK--------------GHQKRITGLAFSNTLNVLVSSGA-D-----SQLCVWSTDGWEKQA-SKFLTIP  970 (1134)
Q Consensus       917 ~~~~-----~~l~--------------~h~~~V~~l~~s~d~~~l~s~s~-D-----g~i~iwd~~~~~~~~-~~~~~~~  970 (1134)
                      ++..     ..+.              .+......+.++|||++|+++.. +     ..|..|++....... ...+...
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~  304 (365)
T d1jofa_         225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT  304 (365)
T ss_dssp             TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred             CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE
Confidence            5321     1110              12233567899999999987643 1     237777765432111 1111111


Q ss_pred             CCCCCCCCCceEEEEcC-CCCEEEEE--eeceEEEEeCCCc
Q 001163          971 NGRTASALADTRVQFHL-DQTHLLAV--HETQIAIYEAPKL 1008 (1134)
Q Consensus       971 ~~~~~~~~~v~~l~fs~-dg~~l~~~--~d~~i~iwd~~~~ 1008 (1134)
                      .   ........++|+| +|++|+++  .++.|.+|+++..
T Consensus       305 ~---~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         305 P---TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             S---SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             E---cCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            1   0113457799998 89998885  6689999987543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.15  E-value=2.1e-09  Score=117.47  Aligned_cols=257  Identities=10%  Similarity=0.037  Sum_probs=150.8

Q ss_pred             CCCeeEEEEcCCCCeEEEeeCCeEEEEEccC-CeEEEEe-cCCCCCeEEEEEcCCCCcE--EEEEe-CCCcEEEEEccc-
Q 001163          843 EDAVPCFALSKNDSYVMSASGGKISLFNMMT-FKTMTTF-MPPPPAATFLAFHPQDNNI--IAIGM-EDSSIQIYNVRV-  916 (1134)
Q Consensus       843 ~~~v~~v~~s~dg~~la~~sdg~i~lwd~~~-~~~~~~~-~~~~~~v~~l~~sp~~~~~--la~g~-~dg~i~iwd~~~-  916 (1134)
                      ...+.-|+|++++++|.++..+.+..|.+.. +...... .........+++++ +++.  ++++. ..++|..+.+.. 
T Consensus        39 ~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~-~~~~~~v~~a~~~~~~v~~~~~~~~  117 (365)
T d1jofa_          39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECC-CCCEEEEEEecCCCCEEEEeEccCC
Confidence            4456679999999999988878888887753 2222221 11233456778888 6663  33322 234555544321 


Q ss_pred             c---eE------------E-EeccCccCceEEEEEeeCCCEEEEEeC-CCcEEEEECCCCc-cccceeeeecCCCCCCCC
Q 001163          917 D---EV------------K-TKLKGHQKRITGLAFSNTLNVLVSSGA-DSQLCVWSTDGWE-KQASKFLTIPNGRTASAL  978 (1134)
Q Consensus       917 ~---~~------------~-~~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~  978 (1134)
                      +   ..            . ..-......+.+++|+|||+++++++. ...|.+|++.... ...........    ...
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~----~g~  193 (365)
T d1jofa_         118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD----PGD  193 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS----TTC
T ss_pred             CCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecC----CCC
Confidence            0   00            0 001112234679999999998888764 3468888765422 11111111111    114


Q ss_pred             CceEEEEcCCCCEEEEE--eeceEEEEeCCCcccceeec-----------------cCCCccCEEEEEEccCCCEEEEEe
Q 001163          979 ADTRVQFHLDQTHLLAV--HETQIAIYEAPKLECLKQFV-----------------PREASGPITHATYSCDSQSIYVAF 1039 (1134)
Q Consensus       979 ~v~~l~fs~dg~~l~~~--~d~~i~iwd~~~~~~~~~~~-----------------~~~h~~~v~~~~~s~dg~~l~s~s 1039 (1134)
                      ..+.++|+|||+++.+.  .+++|.+|++..........                 ...+......+.++|||++|+++.
T Consensus       194 gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsn  273 (365)
T d1jofa_         194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             ceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEc
Confidence            68999999999999885  56899999987664332211                 001233467899999999998775


Q ss_pred             c-C-----CcEEEeecCCCcceeecCC-CcccCCCCCCCceeEEEEecCCCCCEEEEE-ecCCcEEEEeCCCCCCCc
Q 001163         1040 E-E-----GSVGVLTASTLRLRCRINP-TAYLPTNPSLRVYPLVIAGNPTDPNQFALG-LTDGGVYIIEPLEAEGRW 1108 (1134)
Q Consensus      1040 ~-D-----g~i~vwd~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~p~~~~~l~s~-~~Dg~v~vW~~~~~~~~~ 1108 (1134)
                      . +     ..|..|++.....+.+... ......|  .  .+..++++|.++++|+++ ..++.|.+|++......+
T Consensus       274 r~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G--~--~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l~~  346 (365)
T d1jofa_         274 RANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSG--G--HSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLHR  346 (365)
T ss_dssp             EESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCC--T--TCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEEEE
T ss_pred             ccCCCccceEEEEEEecCCCceeeEeEeeEEEcCC--C--CccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCcCcE
Confidence            3 2     2388888765433222110 0000111  1  233457778667866655 577899999987655433

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=3.3e-08  Score=103.00  Aligned_cols=238  Identities=11%  Similarity=0.120  Sum_probs=145.9

Q ss_pred             cEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCC---EEEEEEccCCceeeee
Q 001163          380 DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKH---IVHLYTYHGGDELRNH  456 (1134)
Q Consensus       380 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg---~v~iwd~~~~~~~~~~  456 (1134)
                      .|.|.|.+.+....                    +..+...+...+|||||++||......   .+.+.+..++...   
T Consensus        20 ~l~i~d~dG~~~~~--------------------l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~---   76 (269)
T d2hqsa1          20 ELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---   76 (269)
T ss_dssp             EEEEEETTSCSCEE--------------------EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---
T ss_pred             EEEEEcCCCCCcEE--------------------EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee---
Confidence            57777876554332                    344667889999999999999875543   4666677666533   


Q ss_pred             eeeecCCCCEEEEEEecCCCceEEEEEeCCCe--EEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEE
Q 001163          457 LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV--IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIK  534 (1134)
Q Consensus       457 ~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~--i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~  534 (1134)
                       .+..+.+......|+|+|+.+ +.....++.  +..+............ .........+..... ..+++...++...
T Consensus        77 -~~~~~~~~~~~~~~spdg~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~g~~~  152 (269)
T d2hqsa1          77 -QVASFPRHNGAPAFSPDGSKL-AFALSKTGSLNLYVMDLASGQIRQVTD-GRSNNTEPTWFPDSQ-NLAFTSDQAGRPQ  152 (269)
T ss_dssp             -EEECCSSCEEEEEECTTSSEE-EEEECTTSSCEEEEEETTTCCEEECCC-CSSCEEEEEECTTSS-EEEEEECTTSSCE
T ss_pred             -EEeeeecccccceecCCCCee-eEeeecCCccceeecccccccceeeee-ccccccccccccccc-cceecccccCCce
Confidence             355678888999999999953 222323332  3333333333333332 333333333433332 3555555566544


Q ss_pred             EE--ecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCE
Q 001163          535 AW--LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNR  612 (1134)
Q Consensus       535 vw--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  612 (1134)
                      +|  ++..... ..............|+|+++.++...... +...+.+.+...+...... . .. ......|+|||+.
T Consensus       153 i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~-~-~~-~~~~p~~SPDG~~  227 (269)
T d2hqsa1         153 VYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGGVQVLS-S-TF-LDETPSLAPNGTM  227 (269)
T ss_dssp             EEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECS-SCEEEEEEETTTCCEEECC-C-SS-SCEEEEECTTSSE
T ss_pred             Eeeeecccccc-eeeecccccccccccccccceeEEEeecC-CceeeeEeecccccceEee-c-Cc-cccceEECCCCCE
Confidence            44  4443322 22333444667789999999999887553 4667888887776543322 2 22 4567889999999


Q ss_pred             EEEEeC---CCeEEEEEcCCCceeEEEecCCCCCCcceEEEcC
Q 001163          613 FLAAGD---EFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK  652 (1134)
Q Consensus       613 l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp  652 (1134)
                      |+..+.   ...|+++++..+.... +...  ...+...+|+|
T Consensus       228 i~f~s~~~~~~~l~~~~~dg~~~~~-lt~~--~g~~~~p~WSP  267 (269)
T d2hqsa1         228 VIYSSSQGMGSVLNLVSTDGRFKAR-LPAT--DGQVKFPAWSP  267 (269)
T ss_dssp             EEEEEEETTEEEEEEEETTSCCEEE-CCCS--SSEEEEEEECC
T ss_pred             EEEEEcCCCCcEEEEEECCCCCEEE-EeCC--CCcEEeEEeCC
Confidence            876653   3478999998776544 4332  34566788988

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.2e-08  Score=114.87  Aligned_cols=373  Identities=9%  Similarity=0.015  Sum_probs=203.5

Q ss_pred             EEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCC--CCceEEEEEcCCCCEEEEEe---------CCCeEEEE
Q 001163          557 MAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG--KRSVGVVQFDTTKNRFLAAG---------DEFMIKFW  625 (1134)
Q Consensus       557 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~---------~dg~i~iw  625 (1134)
                      ..|.+++.++...   .  ++.|.+||+.+++....+....  ...+....|+||+++++...         ..+.+.++
T Consensus        22 ~~W~~~~~~~~~~---~--~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~   96 (465)
T d1xfda1          22 AKWISDTEFIYRE---Q--KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (465)
T ss_dssp             CCBSSSSCBCCCC---S--SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             CEEeCCCcEEEEe---C--CCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEE
Confidence            3577887765432   1  2348999999887654444332  22566788999999988764         35788999


Q ss_pred             EcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccc
Q 001163          626 DMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTF  705 (1134)
Q Consensus       626 d~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  705 (1134)
                      |+.+++.............+....|||||+.+|-.. ++.|.+.+..++.....+..+....+.                
T Consensus        97 d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~----------------  159 (465)
T d1xfda1          97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIY----------------  159 (465)
T ss_dssp             ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEE----------------
T ss_pred             EccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceee----------------
Confidence            999887655433333344566789999999998776 567877777665222211111100000                


Q ss_pred             cccccccccCcCCCCcccccccCCCCCCccCcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEe
Q 001163          706 GSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYT  785 (1134)
Q Consensus       706 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  785 (1134)
                                                            .|     +.-|-...     .          -...-.++.||
T Consensus       160 --------------------------------------nG-----~~d~vyee-----e----------~~~~~~a~~WS  181 (465)
T d1xfda1         160 --------------------------------------NG-----LSDWLYEE-----E----------ILKTHIAHWWS  181 (465)
T ss_dssp             --------------------------------------EE-----ECCHHHHH-----T----------TSSSSEEEEEC
T ss_pred             --------------------------------------cc-----ccchhhhh-----h----------hccccceEEEC
Confidence                                                  00     00010000     0          01112467789


Q ss_pred             cCCceeeeeccC-CeEEeeecCCC--CC---------CcccccccCCCCcccCCCCCcccccCCCCC---CCCCCeeEEE
Q 001163          786 NSGLAILALASN-AVHKLWKWPRN--ER---------NSTGKATTNQAPQLWQPPSGILMTNDISDT---NPEDAVPCFA  850 (1134)
Q Consensus       786 pdg~~l~~~~~d-g~i~vw~~~~~--~~---------~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~h~~~v~~v~  850 (1134)
                      |||++|+....| ..+..+.+...  ..         ...|.......+.++|+.++.......+..   ....-+..+.
T Consensus       182 PDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~  261 (465)
T d1xfda1         182 PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVK  261 (465)
T ss_dssp             TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEE
T ss_pred             CCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeE
Confidence            999988877643 44444444321  11         111111122235567776665433222210   0122367889


Q ss_pred             EcCCCCeEEEeeC-----CeEEEEEccCCeEEEEecCCC-CC----eEEEEEcCCCCcEE-EE--EeCCC--cEEEEEcc
Q 001163          851 LSKNDSYVMSASG-----GKISLFNMMTFKTMTTFMPPP-PA----ATFLAFHPQDNNII-AI--GMEDS--SIQIYNVR  915 (1134)
Q Consensus       851 ~s~dg~~la~~sd-----g~i~lwd~~~~~~~~~~~~~~-~~----v~~l~~sp~~~~~l-a~--g~~dg--~i~iwd~~  915 (1134)
                      |++|+++++...+     ..|.++|..++++...+.... +.    -....|++ +|+.+ ..  ...+|  .+....+.
T Consensus       262 W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~-dg~~~~fi~~se~~g~~~ly~~~~~  340 (465)
T d1xfda1         262 WATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVS  340 (465)
T ss_dssp             ESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEE
T ss_pred             EcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEcc-CCCeeEEEEeeeecccCceEEEEec
Confidence            9999987776642     248889999988766544222 11    23467899 55532 22  22233  34444332


Q ss_pred             ------cceEEEeccCccCceEEE-EEeeCCCEEE-EEeCCC--cEEEEEC--CCCccccceeeeecCCCCCCCCCceEE
Q 001163          916 ------VDEVKTKLKGHQKRITGL-AFSNTLNVLV-SSGADS--QLCVWST--DGWEKQASKFLTIPNGRTASALADTRV  983 (1134)
Q Consensus       916 ------~~~~~~~l~~h~~~V~~l-~~s~d~~~l~-s~s~Dg--~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~l  983 (1134)
                            .++.+..+....-.|..+ +|..+++.+. ++..++  .-.+|.+  .++..  ..++......   ......+
T Consensus       341 ~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~--~~~lt~~~~~---~~~~~~~  415 (465)
T d1xfda1         341 SSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFN--RQCLSCDLVE---NCTYFSA  415 (465)
T ss_dssp             CSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCC--CBCSSTTSSS---SCCCCEE
T ss_pred             cccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCc--ceeeccccCC---CCCEEEE
Confidence                  233344455445556665 6888877765 444332  2334544  33221  1122211111   1346789


Q ss_pred             EEcCCCCEEEEEee----ceEEEEeCCCcccceeec
Q 001163          984 QFHLDQTHLLAVHE----TQIAIYEAPKLECLKQFV 1015 (1134)
Q Consensus       984 ~fs~dg~~l~~~~d----~~i~iwd~~~~~~~~~~~ 1015 (1134)
                      .|||||++++....    -.+.+++..+++.+..+.
T Consensus       416 ~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le  451 (465)
T d1xfda1         416 SFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLE  451 (465)
T ss_dssp             EECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEE
T ss_pred             EECCCCCEEEEEeecCCCCeEEEEECCCCCEEEEEc
Confidence            99999999987422    346677776666665554

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.06  E-value=7.8e-08  Score=101.82  Aligned_cols=242  Identities=10%  Similarity=0.083  Sum_probs=160.7

Q ss_pred             CceeEEEeecCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEE
Q 001163          346 PKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM  425 (1134)
Q Consensus       346 ~~~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  425 (1134)
                      +.+.+..+.....+..++++|||+ |+++...+++|..||.......                     +......+.+++
T Consensus        17 ~~~v~~~~p~~~~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~~~~---------------------~~~~~~~~~gla   74 (302)
T d2p4oa1          17 PAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQI---------------------HATVEGKVSGLA   74 (302)
T ss_dssp             CEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEE---------------------EEECSSEEEEEE
T ss_pred             cccEEEECCCCCCcCCEEECCCCC-EEEEeCCCCEEEEEeCCCCEEE---------------------EEcCCCCcceEE
Confidence            355666777666789999999998 7788888999988886643221                     233556899999


Q ss_pred             EcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEec-
Q 001163          426 WSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE-  504 (1134)
Q Consensus       426 ~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-  504 (1134)
                      |+|||+++++...++.+..|+............-.........+++.+++.  ++++.+.++.+..+|..++....... 
T Consensus        75 ~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~--~~v~~~~~~~i~~~~~~~~~~~~~~~~  152 (302)
T d2p4oa1          75 FTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIWLEH  152 (302)
T ss_dssp             ECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             EcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCC--EEeeccccccceeeeccCCcceeEecC
Confidence            999999999998888888888765432221111223445688999999998  78888888999999987765432211 


Q ss_pred             ---------CCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeee--cCCCCCeeEEEECcCCCEEEEEecCC
Q 001163          505 ---------GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY--DAPGHSSTMMAYSADGARLFSCGTNK  573 (1134)
Q Consensus       505 ---------~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~~~  573 (1134)
                               ........+.+  +. +.++++.+..+.|..++..........  .........+++.++|++.++...  
T Consensus       153 ~~~~~~~~~~~~~~~ngi~~--~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~--  227 (302)
T d2p4oa1         153 PMLARSNSESVFPAANGLKR--FG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHI--  227 (302)
T ss_dssp             GGGSCSSTTCCSCSEEEEEE--ET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBT--
T ss_pred             CccceeeccCcccccccccc--cC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcC--
Confidence                     11223455554  23 256777788889888887654432211  112334567999999997666543  


Q ss_pred             CCCeEEEEEeCCCCeeEEEecCC-CCCceEEEEE---cCCCCEEEEEeCC
Q 001163          574 EGESYLVEWNESEGAVKRTYHGL-GKRSVGVVQF---DTTKNRFLAAGDE  619 (1134)
Q Consensus       574 ~~~~~i~~wd~~~~~~~~~~~~~-~~~~v~~~~~---~~~~~~l~~~~~d  619 (1134)
                        ...|..++.. ++........ ......+++|   ++|++.|+.++..
T Consensus       228 --~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         228 --YNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             --TCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             --CCcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence              2348888765 3333332221 1125788999   6677888776543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=2.1e-07  Score=96.74  Aligned_cols=233  Identities=11%  Similarity=0.065  Sum_probs=145.8

Q ss_pred             ceeEEEeecCCCeeEEEEcCCCCeEEEEEeCCC--cEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEE
Q 001163          347 KTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMG--DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRV  424 (1134)
Q Consensus       347 ~~~~~~~~h~~~V~~v~fsp~g~~lla~gs~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  424 (1134)
                      .+......+...+...+|||||++|+.+....+  .+.+.+...+....                    +..+.+.+...
T Consensus        29 ~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~   88 (269)
T d2hqsa1          29 YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRHNGAP   88 (269)
T ss_dssp             CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE--------------------EECCSSCEEEE
T ss_pred             CCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE--------------------Eeeeecccccc
Confidence            444555667888999999999998876665554  35555655554332                    34577888999


Q ss_pred             EEcCCCCEEEEEeC-CCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCC--eEEEEECCCCceeE
Q 001163          425 MWSPDGTLFGVAYS-KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--VIKVWDAVTGTKQY  501 (1134)
Q Consensus       425 ~~spd~~~las~s~-dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~--~i~iwd~~~~~~~~  501 (1134)
                      .|||||+.++.... ++...++.........  .....+........+++++.. .+++...++  .|.+.++..+... 
T Consensus        89 ~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~i~~~~~~~~~~~-  164 (269)
T d2hqsa1          89 AFSPDGSKLAFALSKTGSLNLYVMDLASGQI--RQVTDGRSNNTEPTWFPDSQN-LAFTSDQAGRPQVYKVNINGGAPQ-  164 (269)
T ss_dssp             EECTTSSEEEEEECTTSSCEEEEEETTTCCE--EECCCCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEETTSSCCE-
T ss_pred             eecCCCCeeeEeeecCCccceeecccccccc--eeeeecccccccccccccccc-ceecccccCCceEeeeecccccce-
Confidence            99999999988654 3333333332222111  123345555666778888875 455555555  4556666555433 


Q ss_pred             EecCCCcCEEEEeccccCCccEEEEe-cCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEE
Q 001163          502 IFEGHESPVYSICPHHKENIQFIFST-ATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLV  580 (1134)
Q Consensus       502 ~~~~h~~~v~~~~~~~~~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~  580 (1134)
                      .+..+........|++  ++..++.. ...+...+|..+...................|||||+.|+..+.. .+...|+
T Consensus       165 ~~~~~~~~~~~~~~sp--dg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~-~~~~~l~  241 (269)
T d2hqsa1         165 RITWEGSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQ-GMGSVLN  241 (269)
T ss_dssp             ECCCSSSEEEEEEECT--TSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEE-TTEEEEE
T ss_pred             eeeccccccccccccc--ccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcC-CCCcEEE
Confidence            3334455555566654  44555544 445566666555544444555555667788999999999877643 3466799


Q ss_pred             EEeCCCCeeEEEecCCCCCceEEEEEcC
Q 001163          581 EWNESEGAVKRTYHGLGKRSVGVVQFDT  608 (1134)
Q Consensus       581 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~  608 (1134)
                      ++++..+...+ +..... .+...+|+|
T Consensus       242 ~~~~dg~~~~~-lt~~~g-~~~~p~WSP  267 (269)
T d2hqsa1         242 LVSTDGRFKAR-LPATDG-QVKFPAWSP  267 (269)
T ss_dssp             EEETTSCCEEE-CCCSSS-EEEEEEECC
T ss_pred             EEECCCCCEEE-EeCCCC-cEEeEEeCC
Confidence            99998776544 444333 677788988

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.97  E-value=2e-07  Score=97.28  Aligned_cols=245  Identities=12%  Similarity=0.096  Sum_probs=165.3

Q ss_pred             ccEEEEEEecCCceeeeeccCCeEEeeecCCCCCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCC-
Q 001163          777 MRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKND-  855 (1134)
Q Consensus       777 ~~i~~l~~spdg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg-  855 (1134)
                      .....++++++|+.+++-..+..|++|+.+..       .+.       ...+.      ....+.......+++..+. 
T Consensus        23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~-------~~~-------~~~~~------~~~~~~~~~p~~~~~~~~~~   82 (279)
T d1q7fa_          23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR-------FKF-------QFGEC------GKRDSQLLYPNRVAVVRNSG   82 (279)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTTSC-------EEE-------EECCB------SSSTTCBSSEEEEEEETTTT
T ss_pred             CCccEEEEcCCCCEEEEECCCCEEEEEeCCCC-------EEE-------Eeccc------CCCccccccccccccccccc
Confidence            35689999999998877777889999874421       110       00000      0000122234456655554 


Q ss_pred             CeEEEee--CCeEEEEEccCCeEEEEecC-CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEec--cCccCce
Q 001163          856 SYVMSAS--GGKISLFNMMTFKTMTTFMP-PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKL--KGHQKRI  930 (1134)
Q Consensus       856 ~~la~~s--dg~i~lwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l--~~h~~~V  930 (1134)
                      .++++..  ++.|..++. .++....+.. .......+++.+ ++.++++....+.+.+++.. ++.+..+  ..+....
T Consensus        83 ~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~  159 (279)
T d1q7fa_          83 DIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFP  159 (279)
T ss_dssp             EEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSE
T ss_pred             ccceeccCCccccccccc-cccceeecCCCcccccceecccc-CCcEEEEeeccceeeEeccC-Cceeeccccccccccc
Confidence            4444443  467888876 5666666643 345678999998 88888888878888888854 5666554  3456678


Q ss_pred             EEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeec-CCCCCCCCCceEEEEcCCCCEEEEE--eeceEEEEeCCC
Q 001163          931 TGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIP-NGRTASALADTRVQFHLDQTHLLAV--HETQIAIYEAPK 1007 (1134)
Q Consensus       931 ~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~i~iwd~~~ 1007 (1134)
                      ..+++.+++..+++....+.|.+||.....     ..... .+..   .....+++.++|+.+++-  .++.|.+|+. +
T Consensus       160 ~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~-----~~~~g~~g~~---~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~  230 (279)
T d1q7fa_         160 NGVVVNDKQEIFISDNRAHCVKVFNYEGQY-----LRQIGGEGIT---NYPIGVGINSNGEILIADNHNNFNLTIFTQ-D  230 (279)
T ss_dssp             EEEEECSSSEEEEEEGGGTEEEEEETTCCE-----EEEESCTTTS---CSEEEEEECTTCCEEEEECSSSCEEEEECT-T
T ss_pred             ceeeeccceeEEeeeccccceeeeecCCce-----eeeecccccc---cCCcccccccCCeEEEEECCCCcEEEEECC-C
Confidence            899999999999998889999999976522     12221 1221   357889999999977763  3457999984 5


Q ss_pred             cccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcc
Q 001163         1008 LECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRL 1054 (1134)
Q Consensus      1008 ~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~ 1054 (1134)
                      |+.+..+...........+++.+||.+++ ++.++.|++|......+
T Consensus       231 G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         231 GQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             SCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCCCC
T ss_pred             CCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeecC
Confidence            77777765444445788999999997655 56789999999887643

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.93  E-value=7.2e-08  Score=102.08  Aligned_cols=236  Identities=9%  Similarity=-0.006  Sum_probs=148.9

Q ss_pred             CCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccc--eEE
Q 001163          844 DAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD--EVK  920 (1134)
Q Consensus       844 ~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~--~~~  920 (1134)
                      ..+..++++|||+++++.. +++|+.|+... +. ..+......+.+++|++ +|+++++...++.+.+|+....  ...
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~~-~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~  104 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQ-QIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE  104 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CE-EEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEeCCC-CE-EEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEeccccccee
Confidence            3578999999999988887 78898888654 32 33334567899999999 8889999888888988887643  211


Q ss_pred             Ee-ccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeec--CCCCCCCCCceEEEEcCCCCEEEE--E
Q 001163          921 TK-LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIP--NGRTASALADTRVQFHLDQTHLLA--V  995 (1134)
Q Consensus       921 ~~-l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~v~~l~fs~dg~~l~~--~  995 (1134)
                      .. -.........+++.++++++++.+.++.+..++...+.......-...  ............+.++  +..+..  +
T Consensus       105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~  182 (302)
T d2p4oa1         105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNT  182 (302)
T ss_dssp             EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEET
T ss_pred             eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecC
Confidence            11 112345678999999999999988899898888877542211110000  0001101233455554  445554  4


Q ss_pred             eeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeE
Q 001163          996 HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPL 1075 (1134)
Q Consensus       996 ~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~ 1075 (1134)
                      ..+.|+.++.....................++|.+||++.++...++.|..++.+. +.........       ....+.
T Consensus       183 ~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G-~~~~~~~~~~-------~~~~pt  254 (302)
T d2p4oa1         183 EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR-STTIIAQAEQ-------GVIGST  254 (302)
T ss_dssp             TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC-CEEEEECGGG-------TCTTEE
T ss_pred             CCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCC-CEEEEEecCC-------CCCCce
Confidence            66888888887654333222111233456799999999888888889999998654 3322221111       111244


Q ss_pred             EEEe---cCCCCCEEEEEecC
Q 001163         1076 VIAG---NPTDPNQFALGLTD 1093 (1134)
Q Consensus      1076 ~~~~---~p~~~~~l~s~~~D 1093 (1134)
                      +++|   .+ |++.|.+++..
T Consensus       255 ~vafg~~~~-D~~~Lyvtt~~  274 (302)
T d2p4oa1         255 AVAFGQTEG-DCTAIYVVTNG  274 (302)
T ss_dssp             EEEECCSTT-TTTEEEEEECT
T ss_pred             EEEEcCCCC-CCCEEEEECCC
Confidence            5578   44 66777665544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.88  E-value=7.7e-07  Score=92.60  Aligned_cols=240  Identities=12%  Similarity=0.102  Sum_probs=160.5

Q ss_pred             CeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCC------CCCeEEEEEcCCCCcEEEEE-eCCCcEEEEEccc
Q 001163          845 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPP------PPAATFLAFHPQDNNIIAIG-MEDSSIQIYNVRV  916 (1134)
Q Consensus       845 ~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~------~~~v~~l~~sp~~~~~la~g-~~dg~i~iwd~~~  916 (1134)
                      ....++++++|+++++-. ++.|++||.+ ++.+..+...      ......+++.++.+.++++. +.++.|.+++. .
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-c
Confidence            457999999999777755 6889999964 6777766421      11345667666345555443 34557777775 4


Q ss_pred             ceEEEecc-CccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE
Q 001163          917 DEVKTKLK-GHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV  995 (1134)
Q Consensus       917 ~~~~~~l~-~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~  995 (1134)
                      ++....+. ........+++.++|.++++....+.+.+++.+...     .......  ........+++.++|+.+++.
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~-----~~~~g~~--~~~~~~~~i~~d~~g~i~v~d  174 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV-----LHKFGCS--KHLEFPNGVVVNDKQEIFISD  174 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-----EEEEECT--TTCSSEEEEEECSSSEEEEEE
T ss_pred             ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCce-----eeccccc--ccccccceeeeccceeEEeee
Confidence            55555553 345667889999999988888878888888866521     1111111  111457889999999877774


Q ss_pred             -eeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEec-CCcEEEeecCCCcceeecCCCcccCCCCCCCce
Q 001163          996 -HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFE-EGSVGVLTASTLRLRCRINPTAYLPTNPSLRVY 1073 (1134)
Q Consensus       996 -~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~ 1073 (1134)
                       ..+.|++||.. ++.+..+-..++......|++.++|+++++-.. ++.|.+|+ .+|+.+..+.....     ..  .
T Consensus       175 ~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~-----~~--~  245 (279)
T d1q7fa_         175 NRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVK-----HA--Q  245 (279)
T ss_dssp             GGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSC-----CS--C
T ss_pred             ccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCC-----CC--C
Confidence             66899999975 666666644455667889999999997776544 45799998 46877666542210     11  2


Q ss_pred             eEEEEecCCCCCEEEEEecCCcEEEEeCCCC
Q 001163         1074 PLVIAGNPTDPNQFALGLTDGGVYIIEPLEA 1104 (1134)
Q Consensus      1074 ~~~~~~~p~~~~~l~s~~~Dg~v~vW~~~~~ 1104 (1134)
                      +..++..| |+. |++++.+++|++|+....
T Consensus       246 p~~vav~~-dG~-l~V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         246 CFDVALMD-DGS-VVLASKDYRLYIYRYVQL  274 (279)
T ss_dssp             EEEEEEET-TTE-EEEEETTTEEEEEECSCC
T ss_pred             EeEEEEeC-CCc-EEEEeCCCeEEEEEeeee
Confidence            34446667 565 555678999999998654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.87  E-value=3.9e-07  Score=93.75  Aligned_cols=240  Identities=10%  Similarity=0.008  Sum_probs=152.3

Q ss_pred             CCCCeeEEEEcCCCCeEEEee--CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceE
Q 001163          842 PEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEV  919 (1134)
Q Consensus       842 h~~~v~~v~~s~dg~~la~~s--dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~  919 (1134)
                      +......++++++|.+.++..  .+.+..++...................+++++ ++.++++....+.+++++-.++..
T Consensus        12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~   90 (260)
T d1rwia_          12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQT   90 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCE
T ss_pred             CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeecccee
Confidence            344568999999999766654  46777776654333322222234567899999 788888777777777766555554


Q ss_pred             EEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-Eeec
Q 001163          920 KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHET  998 (1134)
Q Consensus       920 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~  998 (1134)
                      +....+. ....++++.++++++++-..+..+..++......    ......+.    .....++++++|+.+++ ..++
T Consensus        91 ~~~~~~~-~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~----~~~~~~~~----~~p~~i~~~~~g~~~v~~~~~~  161 (260)
T d1rwia_          91 VLPFDGL-NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ----TVLPFTGL----NDPDGVAVDNSGNVYVTDTDNN  161 (260)
T ss_dssp             ECCCCSC-CSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC----EECCCCSC----CSCCEEEECTTCCEEEEEGGGT
T ss_pred             eeeeeee-eecccccccccceeEeecccccccccccccccee----eeeeeccc----CCcceeeecCCCCEeeeccccc
Confidence            4443332 4568999999999888877777777777655331    11111111    24578999999997766 3667


Q ss_pred             eEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCCCceeEEEE
Q 001163          999 QIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLVIA 1078 (1134)
Q Consensus       999 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 1078 (1134)
                      .|..++...........  ........+++.++|.++++....+.|..++...........       .  .--.+..++
T Consensus       162 ~i~~~d~~~~~~~~~~~--~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~-------~--~~~~P~~i~  230 (260)
T d1rwia_         162 RVVKLEAESNNQVVLPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPF-------T--GLNTPLAVA  230 (260)
T ss_dssp             EEEEECTTTCCEEECCC--SSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCC-------C--SCCCEEEEE
T ss_pred             cccccccccceeeeeec--cccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEcc-------C--CCCCeEEEE
Confidence            89999977544322211  334567899999999988888888888888865543221111       1  111345667


Q ss_pred             ecCCCCCEEEEEecCCcEEEEeCCCCC
Q 001163         1079 GNPTDPNQFALGLTDGGVYIIEPLEAE 1105 (1134)
Q Consensus      1079 ~~p~~~~~l~s~~~Dg~v~vW~~~~~~ 1105 (1134)
                      +++ +++++++-..+++|+  .+...+
T Consensus       231 ~d~-~g~l~vad~~~~rI~--~i~~~~  254 (260)
T d1rwia_         231 VDS-DRTVYVADRGNDRVV--KLTSLE  254 (260)
T ss_dssp             ECT-TCCEEEEEGGGTEEE--EECCCG
T ss_pred             EeC-CCCEEEEECCCCEEE--EEeCCC
Confidence            888 577777766666555  444433

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.85  E-value=3.9e-07  Score=93.83  Aligned_cols=241  Identities=9%  Similarity=0.017  Sum_probs=148.9

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la  434 (1134)
                      +......|+++++|..+++..+..+.|..++.........                   ..+-......++++++|++++
T Consensus        12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~gvav~~~g~i~v   72 (260)
T d1rwia_          12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYV   72 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC-------------------CCCSCCSCCCEEECTTCCEEE
T ss_pred             CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe-------------------ccCCccCceEEEEcCCCCEEE
Confidence            3345679999999995555555667777777654432210                   111123456789999999888


Q ss_pred             EEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEe
Q 001163          435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSIC  514 (1134)
Q Consensus       435 s~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~  514 (1134)
                      +....+.+++++-.++..+.   ... .......+++.++++  ++++-..+..+..++............-.....+++
T Consensus        73 ~d~~~~~i~~~~~~~~~~~~---~~~-~~~~p~~iavd~~g~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~  146 (260)
T d1rwia_          73 TDFNNRVVTLAAGSNNQTVL---PFD-GLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVA  146 (260)
T ss_dssp             EETTTEEEEECTTCSCCEEC---CCC-SCCSEEEEEECTTCC--EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEE
T ss_pred             eeeeeceeeeeeeccceeee---eee-eeeecccccccccce--eEeeccccccccccccccceeeeeeecccCCcceee
Confidence            87777777776655544332   122 234578999999998  666666667777777554433222112223446677


Q ss_pred             ccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEec
Q 001163          515 PHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH  594 (1134)
Q Consensus       515 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~  594 (1134)
                      +.+  ++.++++...++.|..++.+.................+++.++|+++++...    ...|..++..... ...+.
T Consensus       147 ~~~--~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~----~~~i~~~~~~~~~-~~~~~  219 (260)
T d1rwia_         147 VDN--SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTT-STVLP  219 (260)
T ss_dssp             ECT--TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TTEEEEECTTCSC-CEECC
T ss_pred             ecC--CCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecC----CCEEEEEeCCCCe-EEEEc
Confidence            754  5578888888889999987754433332233446688999999987776542    3357777765443 22232


Q ss_pred             CCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 001163          595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDM  627 (1134)
Q Consensus       595 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  627 (1134)
                      ...-.....++++++++.+++-..++.|+..+.
T Consensus       220 ~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         220 FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             CCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             cCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            222225678999999887776566666665543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.5e-06  Score=97.36  Aligned_cols=257  Identities=12%  Similarity=0.061  Sum_probs=147.3

Q ss_pred             EEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeC----
Q 001163          363 DFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS----  438 (1134)
Q Consensus       363 ~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~----  438 (1134)
                      .|.+++.++  .-..+|.|.+||+.+++....     .+.           ..-..-.+....||||+++|+....    
T Consensus        23 ~W~~~~~~~--~~~~~g~i~~~~~~~~~~~~l-----~~~-----------~~~~~~~~~~~~~SpD~~~vl~~~~~~~~   84 (465)
T d1xfda1          23 KWISDTEFI--YREQKGTVRLWNVETNTSTVL-----IEG-----------KKIESLRAIRYEISPDREYALFSYNVEPI   84 (465)
T ss_dssp             CBSSSSCBC--CCCSSSCEEEBCGGGCCCEEE-----ECT-----------TTTTTTTCSEEEECTTSSEEEEEESCCCC
T ss_pred             EEeCCCcEE--EEeCCCcEEEEECCCCCEEEE-----EcC-----------ccccccccceeEECCCCCeEEEEEcccce
Confidence            577777743  235678899999988864321     000           0112235677899999999888743    


Q ss_pred             -----CCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEec-CCCcCE--
Q 001163          439 -----KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE-GHESPV--  510 (1134)
Q Consensus       439 -----dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~h~~~v--  510 (1134)
                           .+.+.++|+.++... ...........+....|||||+.  +|-. .++.|.+.+..++..++... +..+.|  
T Consensus        85 ~r~s~~~~~~i~d~~~~~~~-~l~~~~~~~~~l~~~~wSPDG~~--iafv-~~~nl~~~~~~~~~~~~lt~~g~~~~i~n  160 (465)
T d1xfda1          85 YQHSYTGYYVLSKIPHGDPQ-SLDPPEVSNAKLQYAGWGPKGQQ--LIFI-FENNIYYCAHVGKQAIRVVSTGKEGVIYN  160 (465)
T ss_dssp             SSSCCCSEEEEEESSSCCCE-ECCCTTCCSCCCSBCCBCSSTTC--EEEE-ETTEEEEESSSSSCCEEEECCCBTTTEEE
T ss_pred             eEeeccccEEEEEccCCcee-eccCccCCccccceeeeccCCce--EEEE-ecceEEEEecCCCceEEEecccCcceeec
Confidence                 577899999988643 22222334456777899999995  4433 35788888887776655332 222222  


Q ss_pred             ---------------EEEeccccCCccEEEEecC-CCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCC
Q 001163          511 ---------------YSICPHHKENIQFIFSTAT-DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKE  574 (1134)
Q Consensus       511 ---------------~~~~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~  574 (1134)
                                     .++-|  ++||+.|+.... +..|..+.+.....     .....+..+.+..-|..        .
T Consensus       161 G~~d~vyeee~~~~~~a~~W--SPDgk~iaf~~~D~s~V~~~~~~~~~~-----~~~p~~~~~~Yp~~G~~--------n  225 (465)
T d1xfda1         161 GLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTG-----SIYPTVKPYHYPKAGSE--------N  225 (465)
T ss_dssp             EECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSS-----SSSCCCEEEECCBTTSC--------C
T ss_pred             cccchhhhhhhccccceEEE--CCCCCeEEEEEecccccceeecccccc-----cccceeeeeeccccCCC--------C
Confidence                           23334  556677776643 33444444322110     01112333333222211        1


Q ss_pred             CCeEEEEEeCCCCeeEEEecC-----CCCCceEEEEEcCCCCEEEEEe-CC---CeEEEEEcCCCceeEEEecCCCCCC-
Q 001163          575 GESYLVEWNESEGAVKRTYHG-----LGKRSVGVVQFDTTKNRFLAAG-DE---FMIKFWDMDNVNLLASIDADGGLQA-  644 (1134)
Q Consensus       575 ~~~~i~~wd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~-~d---g~i~iwd~~~~~~~~~~~~~~~~~~-  644 (1134)
                      ....+.++|+.++........     .....+..+.|+++++.++... .+   ..|.++|..+++......... ... 
T Consensus       226 p~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~-~~wv  304 (465)
T d1xfda1         226 PSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES-EAWL  304 (465)
T ss_dssp             CEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC-SSCC
T ss_pred             CceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcC-CceE
Confidence            233588888877654332211     1122366789999987666543 22   358889999998766554321 111 


Q ss_pred             ---cceEEEcCCCcEE
Q 001163          645 ---SPCIRFNKEGILL  657 (1134)
Q Consensus       645 ---v~~v~~sp~~~~l  657 (1134)
                         -....|+++|+.+
T Consensus       305 ~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         305 HRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             CCCCCCCEECTTSCSE
T ss_pred             eccCCceeEccCCCee
Confidence               2346788888744

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.74  E-value=2e-06  Score=90.79  Aligned_cols=199  Identities=11%  Similarity=0.049  Sum_probs=127.0

Q ss_pred             CeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCC----CeEEEEEcCCCCcEEEEEeC--------------
Q 001163          845 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPP----AATFLAFHPQDNNIIAIGME--------------  905 (1134)
Q Consensus       845 ~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~----~v~~l~~sp~~~~~la~g~~--------------  905 (1134)
                      ....++|+++|..++++. .+.|..++.++...........+    ..+.+++.+ +|.+.++-..              
T Consensus        72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~  150 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQE  150 (314)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSS
T ss_pred             cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECC-CCCEEEecCccCcccccccceecc
Confidence            356899999999877776 67788888865543222111111    357799999 7887776432              


Q ss_pred             -CCcEEEEEcccceEEEeccCccCceEEEEEeeCCC-----EEEEEeCCCcEEEEECCCCcccc-ceeeeecCCCCCCCC
Q 001163          906 -DSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLN-----VLVSSGADSQLCVWSTDGWEKQA-SKFLTIPNGRTASAL  978 (1134)
Q Consensus       906 -dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~-----~l~s~s~Dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~  978 (1134)
                       +|.|..++. .++..... ..-..-+.++|++++.     +.++-+..+.|..|++....... ........+...  .
T Consensus       151 ~~G~v~~~~~-dg~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~--~  226 (314)
T d1pjxa_         151 KFGSIYCFTT-DGQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE--G  226 (314)
T ss_dssp             SCEEEEEECT-TSCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS--C
T ss_pred             CCceEEEEee-cCceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccc--c
Confidence             233444443 24433222 2233346899999875     45555678889888876432211 112222222111  2


Q ss_pred             CceEEEEcCCCCEEEEE-eeceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEE-EEEecCCcEEEeecC
Q 001163          979 ADTRVQFHLDQTHLLAV-HETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSI-YVAFEEGSVGVLTAS 1050 (1134)
Q Consensus       979 ~v~~l~fs~dg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l-~s~s~Dg~i~vwd~~ 1050 (1134)
                      ....+++..+|++.++. ..+.|.+||.+.++.+..+..  ....+++++|.+|++.| ++.+.+|.|...++.
T Consensus       227 ~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~--p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         227 GADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             cceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEEC--CCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            34679999999977664 578899999988887766653  34678999999999855 566667888887764

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.73  E-value=3.8e-06  Score=88.55  Aligned_cols=249  Identities=12%  Similarity=0.089  Sum_probs=154.0

Q ss_pred             cCCCeeEEEEcCCCCeEEEEEeC-------CCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEc
Q 001163          355 QGSAVKSMDFHPVQQILLVVGTN-------MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS  427 (1134)
Q Consensus       355 h~~~V~~v~fsp~g~~lla~gs~-------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  427 (1134)
                      .-.....++|.|+|+.+ ++...       +|.|..||..++.......-               ....-.+.-..++|.
T Consensus        16 ~~~g~EGpa~d~dG~ly-~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~---------------~~~~~~g~P~Gl~~~   79 (314)
T d1pjxa_          16 DIPGAEGPVFDKNGDFY-IVAPEVEVNGKPAGEILRIDLKTGKKTVICKP---------------EVNGYGGIPAGCQCD   79 (314)
T ss_dssp             CCTTCEEEEECTTSCEE-EEETTCEETTEECCEEEEECTTTCCEEEEECC---------------EETTEECCEEEEEEC
T ss_pred             CCCCCeEeEEeCCCCEE-EEECccccccccCCEEEEEECCCCcEEEEECC---------------ccccCCCcceeEEEe
Confidence            33456788999999944 43221       46788999888764321000               011122346789999


Q ss_pred             CCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCC-CCEEEEEEecCCCceEEEEEeC---------------CCeEEE
Q 001163          428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHV-GSVNDLAFSYPNKQLSVVTCGE---------------DRVIKV  491 (1134)
Q Consensus       428 pd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~-~~V~~v~~s~~~~~~~l~s~s~---------------d~~i~i  491 (1134)
                      ++++.|+++...+.|...|..++..........+.. ...+.+++.++|.  +.+|-..               ++.|..
T Consensus        80 ~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~--lyvtd~~~~~~~~~~~~~~~~~~G~v~~  157 (314)
T d1pjxa_          80 RDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYC  157 (314)
T ss_dssp             SSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEE
T ss_pred             CCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC--EEEecCccCcccccccceeccCCceEEE
Confidence            999988888877788888987654221111111111 1357899999998  5565322               234444


Q ss_pred             EECCCCceeEEecCCCcCEEEEeccccCCc---cEEEEecCCCcEEEEecCCCCceee------ecCC-CCCeeEEEECc
Q 001163          492 WDAVTGTKQYIFEGHESPVYSICPHHKENI---QFIFSTATDGKIKAWLYDNLGSRVD------YDAP-GHSSTMMAYSA  561 (1134)
Q Consensus       492 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~------~~~~-~~~v~~~~~s~  561 (1134)
                      ++. .|+...... .-..-+.++|+++.++   .++++-+..+.|..|++........      +... ......+++..
T Consensus       158 ~~~-dg~~~~~~~-~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~  235 (314)
T d1pjxa_         158 FTT-DGQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE  235 (314)
T ss_dssp             ECT-TSCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT
T ss_pred             Eee-cCceeEeeC-CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEec
Confidence            442 344333222 2333467888776543   2455667788899998765443221      1111 12345789999


Q ss_pred             CCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEE-EEeCCCeEEEEEcC
Q 001163          562 DGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFL-AAGDEFMIKFWDMD  628 (1134)
Q Consensus       562 ~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~  628 (1134)
                      +|+..++...    .+.|.+||...++....+..... ...+++|.|+++.|+ +.+.+|.|+..++.
T Consensus       236 ~GnlyVa~~~----~g~I~~~dp~~g~~~~~i~~p~~-~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         236 DNNLLVANWG----SSHIEVFGPDGGQPKMRIRCPFE-KPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             TCCEEEEEET----TTEEEEECTTCBSCSEEEECSSS-CEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CCcEEEEEcC----CCEEEEEeCCCCEEEEEEECCCC-CEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            9997776543    33599999998887776665543 678899999987554 45577888887764

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.73  E-value=3.7e-06  Score=89.09  Aligned_cols=235  Identities=12%  Similarity=0.067  Sum_probs=148.0

Q ss_pred             CCCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCC----CcEEEEEcccc
Q 001163          843 EDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED----SSIQIYNVRVD  917 (1134)
Q Consensus       843 ~~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~d----g~i~iwd~~~~  917 (1134)
                      ...+..++|+++|++.++-. +++|..|+..+.+....+.........+++++ +|+++++...+    +.+...+..++
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCc
Confidence            34457899999999666654 78999999988776666655667789999999 88877765432    33444454444


Q ss_pred             eEEEeccC--ccCceEEEEEeeCCCEEEEEeCC------CcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCC
Q 001163          918 EVKTKLKG--HQKRITGLAFSNTLNVLVSSGAD------SQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQ  989 (1134)
Q Consensus       918 ~~~~~l~~--h~~~V~~l~~s~d~~~l~s~s~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg  989 (1134)
                      ........  -......+++.++|++.++....      +.+..++.+....     ..+..+.    .....++|+||+
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~-----~~~~~~~----~~pnGia~s~dg  188 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV-----TPIIQNI----SVANGIALSTDE  188 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE-----EEEEEEE----SSEEEEEECTTS
T ss_pred             eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccccee-----EEEeecc----ceeeeeeecccc
Confidence            43332221  12346789999999887764321      2344444443221     1111111    235679999999


Q ss_pred             CEEEEE--eeceEEEEeCCCcc-cceee-----ccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCC
Q 001163          990 THLLAV--HETQIAIYEAPKLE-CLKQF-----VPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPT 1061 (1134)
Q Consensus       990 ~~l~~~--~d~~i~iwd~~~~~-~~~~~-----~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~ 1061 (1134)
                      +.|.++  ..+.|+.|++.... .....     ...........+++.++|++.++....+.|.+|| ..|+.+.++..+
T Consensus       189 ~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~-p~G~~l~~i~~P  267 (319)
T d2dg1a1         189 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN-KRGYPIGQILIP  267 (319)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEEC-TTSCEEEEEECT
T ss_pred             ceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEEC-CCCcEEEEEeCC
Confidence            977764  56899999986432 11111     0011123467899999999888888899999999 578888877644


Q ss_pred             cccCCCCCCCceeEEEEecCCCCCEEEEEec
Q 001163         1062 AYLPTNPSLRVYPLVIAGNPTDPNQFALGLT 1092 (1134)
Q Consensus      1062 ~~~~~~h~~~v~~~~~~~~p~~~~~l~s~~~ 1092 (1134)
                      .. +.++...++  +++|.| +.+.+++...
T Consensus       268 ~~-~~~~~~~~~--~~~~~~-~~~~~~~t~~  294 (319)
T d2dg1a1         268 GR-DEGHMLRST--HPQFIP-GTNQLIICSN  294 (319)
T ss_dssp             TG-GGTCSCBCC--EEEECT-TSCEEEEEEE
T ss_pred             Cc-CCCcCceee--eEEEeC-CCCEEEEEcC
Confidence            31 113333344  447878 4555555443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.54  E-value=3.2e-05  Score=81.57  Aligned_cols=231  Identities=14%  Similarity=0.053  Sum_probs=143.5

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeC----CCeEEEEECC
Q 001163          420 SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE----DRVIKVWDAV  495 (1134)
Q Consensus       420 ~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~----d~~i~iwd~~  495 (1134)
                      ..-.++|.++|++.++-..++.|..|+..+++...   .+.........++|++||+  ++++...    .+.+...+..
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~---~~~~~~~~p~gla~~~dG~--l~va~~~~~~~~~~i~~~~~~  115 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATEN  115 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTT
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEE---EEeCCCCCeeEEEECCCCC--EEEEecCCCccceeEEEEcCC
Confidence            44579999999988887789999999988765433   2334556788999999998  5555433    2345555544


Q ss_pred             CCceeEEecC--CCcCEEEEeccccCCccEEEEecCC------CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEE
Q 001163          496 TGTKQYIFEG--HESPVYSICPHHKENIQFIFSTATD------GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLF  567 (1134)
Q Consensus       496 ~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  567 (1134)
                      ++........  -....+.+++.  ++|.+.++....      +.+..++.+... ...+...-.....++|+|+++.|+
T Consensus       116 ~~~~~~~~~~~~~~~~~nd~~~d--~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg~~ly  192 (319)
T d2dg1a1         116 GDNLQDIIEDLSTAYCIDDMVFD--SKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKVLW  192 (319)
T ss_dssp             SCSCEEEECSSSSCCCEEEEEEC--TTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSEEE
T ss_pred             CceeeeeccCCCcccCCcceeEE--eccceeecccccccccCcceeEEEecccce-eEEEeeccceeeeeeeccccceEE
Confidence            4444333322  12346667664  455666654321      224444433222 222221222456799999999876


Q ss_pred             EEecCCCCCeEEEEEeCCCC-eeEE----E--ecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCC
Q 001163          568 SCGTNKEGESYLVEWNESEG-AVKR----T--YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG  640 (1134)
Q Consensus       568 ~~~~~~~~~~~i~~wd~~~~-~~~~----~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  640 (1134)
                      .+..   ....|+.||+... ....    .  ...........+++..+|+..++....+.|.+||. .|+.+..+....
T Consensus       193 vad~---~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~  268 (319)
T d2dg1a1         193 VTET---TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPG  268 (319)
T ss_dssp             EEEG---GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTT
T ss_pred             Eecc---cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCC
Confidence            6642   2446888887532 1111    1  11111123567999999998888888999999995 688888886542


Q ss_pred             ----CCCCcceEEEcCCCcEEEEEEC
Q 001163          641 ----GLQASPCIRFNKEGILLAVSTN  662 (1134)
Q Consensus       641 ----~~~~v~~v~~sp~~~~l~~~~~  662 (1134)
                          +...+.+++|.+++..+++.+.
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         269 RDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             GGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             cCCCcCceeeeEEEeCCCCEEEEEcC
Confidence                2335789999998877766554

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.44  E-value=1.1e-05  Score=83.52  Aligned_cols=235  Identities=10%  Similarity=0.031  Sum_probs=128.8

Q ss_pred             EEcCC--CCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeC-C
Q 001163          363 DFHPV--QQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS-K  439 (1134)
Q Consensus       363 ~fsp~--g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~-d  439 (1134)
                      ..|||  |++++.+.  +|.|.+.|+.+++...                    +..+.+.+...+|||||++||.... +
T Consensus         5 ~~sPdi~G~~v~f~~--~~dl~~~d~~~g~~~~--------------------Lt~~~~~~~~p~~SPDG~~iaf~~~~~   62 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC--CDDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIAIRVMRG   62 (281)
T ss_dssp             CEEEEEETTEEEEEE--TTEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEEEEEEES
T ss_pred             ccCCCCCCCEEEEEe--CCcEEEEECCCCCEEE--------------------EecCCCcccCEEECCCCCEEEEEEeeC
Confidence            46788  99876664  4568888999887543                    4557778999999999999997642 1


Q ss_pred             -----CEEEEEEccCCceeeeee---eeecCCCCEEEEEEecCCCceEEEEEeC------CCeEEEEECCCCceeEEecC
Q 001163          440 -----HIVHLYTYHGGDELRNHL---EIEAHVGSVNDLAFSYPNKQLSVVTCGE------DRVIKVWDAVTGTKQYIFEG  505 (1134)
Q Consensus       440 -----g~v~iwd~~~~~~~~~~~---~l~~h~~~V~~v~~s~~~~~~~l~s~s~------d~~i~iwd~~~~~~~~~~~~  505 (1134)
                           ..|.+++..+++......   ............+|+|||+  .|+....      ...+...+...+.......+
T Consensus        63 ~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (281)
T d1k32a2          63 SSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVENDGINFVPLNLG  140 (281)
T ss_dssp             TTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGGGTEEEECCSC
T ss_pred             CCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCC--EEEEEEccCCCccceeeeeecCCCceeEEecCC
Confidence                 247777888776433110   0112223457889999999  4444322      22355566555444332222


Q ss_pred             CCcCEEEEeccccCCccEEEEecCCC-----------cEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCC
Q 001163          506 HESPVYSICPHHKENIQFIFSTATDG-----------KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKE  574 (1134)
Q Consensus       506 h~~~v~~~~~~~~~~~~~l~s~s~dg-----------~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~  574 (1134)
                      ..   ....+  ..++..++....+.           ....+.... .................++++  .++... +..
T Consensus       141 ~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~  211 (281)
T d1k32a2         141 PA---THILF--ADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNS-GAFKKIVDMSTHVSSPVIVGH--RIYFIT-DID  211 (281)
T ss_dssp             SC---SEEEE--ETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEET-TEEEEEECCSSCCEEEEEETT--EEEEEE-CTT
T ss_pred             cc---ceeee--cCCCeEEEeeccccceeeeeccCCcceeeeeccc-cceeeccCCccccceeeeecc--ccceec-ccc
Confidence            11   11111  12223333322211           111111111 111112222223334445544  333332 234


Q ss_pred             CCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeE
Q 001163          575 GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLA  634 (1134)
Q Consensus       575 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  634 (1134)
                      +...|+++|+.+++... +.....  .....|+|||+.|+.. .++.|+++|+.+++...
T Consensus       212 ~~~~l~~~d~~g~~~~~-lt~~~~--~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~  267 (281)
T d1k32a2         212 GFGQIYSTDLDGKDLRK-HTSFTD--YYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEK  267 (281)
T ss_dssp             SSCEEEEEETTSCSCEE-CCCCCS--SCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEE
T ss_pred             cccceEEEeCCCCceEE-eecCCC--cccccCcCCCCEEEEE-eCCEEEEEECCCCCEEE
Confidence            46679999998776554 332222  2234689999987764 46889999998887543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.28  E-value=2e-05  Score=81.62  Aligned_cols=199  Identities=14%  Similarity=0.076  Sum_probs=116.8

Q ss_pred             EEcCC--CCeEEEeeCCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeC-C-----CcEEEEEcccceEEE
Q 001163          850 ALSKN--DSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGME-D-----SSIQIYNVRVDEVKT  921 (1134)
Q Consensus       850 ~~s~d--g~~la~~sdg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-d-----g~i~iwd~~~~~~~~  921 (1134)
                      ..|||  |+.++..++|.|.+.|+.+++.. .+..+.+.+...+||| ||+.||.... +     ..|.++++.+++...
T Consensus         5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCCDDLWEHDLKSGSTR-KIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEETTTCCEE-EEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEeCCcEEEEECCCCCEE-EEecCCCcccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            46789  99999888889999999888765 4555677889999999 8888876532 2     247778888776554


Q ss_pred             eccC------ccCceEEEEEeeCCCEEEEEeCC------CcEEEEECCCCcccc--------------ceeeeecCCCC-
Q 001163          922 KLKG------HQKRITGLAFSNTLNVLVSSGAD------SQLCVWSTDGWEKQA--------------SKFLTIPNGRT-  974 (1134)
Q Consensus       922 ~l~~------h~~~V~~l~~s~d~~~l~s~s~D------g~i~iwd~~~~~~~~--------------~~~~~~~~~~~-  974 (1134)
                      ....      ........+|+|||+.|+.....      ..+...+...+....              ...+....... 
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELP  162 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCT
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCccceeeecCCCeEEEeeccccc
Confidence            3211      22345678899999998865332      123444443322110              00000000000 


Q ss_pred             --------------------------CCCCCceEEEEcCCCCEEEEE--eeceEEEEeCCCcccceeeccCCCccCEEEE
Q 001163          975 --------------------------ASALADTRVQFHLDQTHLLAV--HETQIAIYEAPKLECLKQFVPREASGPITHA 1026 (1134)
Q Consensus       975 --------------------------~~~~~v~~l~fs~dg~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~ 1026 (1134)
                                                ..........++++..+....  ....|.++|+.+++... +.. .....+  .
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-lt~-~~~~~~--~  238 (281)
T d1k32a2         163 HWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRK-HTS-FTDYYP--R  238 (281)
T ss_dssp             TSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEE-CCC-CCSSCE--E
T ss_pred             eeeeeccCCcceeeeeccccceeeccCCccccceeeeeccccceecccccccceEEEeCCCCceEE-eec-CCCccc--c
Confidence                                      000112223334442222221  23468888887665433 321 112233  4


Q ss_pred             EEccCCCEEEEEecCCcEEEeecCCCcce
Q 001163         1027 TYSCDSQSIYVAFEEGSVGVLTASTLRLR 1055 (1134)
Q Consensus      1027 ~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~ 1055 (1134)
                      .|||||+.|+.. .++.|.++|+++++..
T Consensus       239 ~~SpDG~~I~f~-~~~~l~~~d~~~g~~~  266 (281)
T d1k32a2         239 HLNTDGRRILFS-KGGSIYIFNPDTEKIE  266 (281)
T ss_dssp             EEEESSSCEEEE-ETTEEEEECTTTCCEE
T ss_pred             cCcCCCCEEEEE-eCCEEEEEECCCCCEE
Confidence            689999998764 4688999999988764

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.20  E-value=0.0003  Score=72.79  Aligned_cols=219  Identities=8%  Similarity=0.009  Sum_probs=140.9

Q ss_pred             EEEEcCCCCeEEEee--CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEec--
Q 001163          848 CFALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKL--  923 (1134)
Q Consensus       848 ~v~~s~dg~~la~~s--dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l--  923 (1134)
                      ...|++....|.-.+  .++|.-||..+++.. .+. ....+.++++.+ ++.++++ +.+ .+.++|..+++.....  
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~-dg~l~va-~~~-gl~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKIS-DSKQLIA-SDD-GLFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTTCCEEEEECS
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEec-CCCEEEE-EeC-ccEEeecccceeeEEeee
Confidence            567887655555554  688999999887653 333 345788999988 7776664 444 5889999988654322  


Q ss_pred             cC--ccCceEEEEEeeCCCEEEEEeCC----CcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE--
Q 001163          924 KG--HQKRITGLAFSNTLNVLVSSGAD----SQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV--  995 (1134)
Q Consensus       924 ~~--h~~~V~~l~~s~d~~~l~s~s~D----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--  995 (1134)
                      ..  ....++.+.+.++|++.++...+    +.-.+|.+..++..     .+..+.    .....++|++|++.+..+  
T Consensus        97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~-----~~~~~~----~~~Ng~~~s~d~~~l~~~dt  167 (295)
T d2ghsa1          97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVT-----KLFADI----SIPNSICFSPDGTTGYFVDT  167 (295)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEE-----EEEEEE----SSEEEEEECTTSCEEEEEET
T ss_pred             ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEE-----EEeecc----CCcceeeecCCCceEEEeec
Confidence            21  12357889999999988775432    34566666655421     111111    125779999999987774  


Q ss_pred             eeceEEEEeCCCccc--c---ee-eccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCC
Q 001163          996 HETQIAIYEAPKLEC--L---KQ-FVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPS 1069 (1134)
Q Consensus       996 ~d~~i~iwd~~~~~~--~---~~-~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~ 1069 (1134)
                      ..+.|..|++.....  .   .. ....+-.+....+++..+|.+.++.-..+.|..|| ..|+.+..+..+.       
T Consensus       168 ~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP~-------  239 (295)
T d2ghsa1         168 KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVPG-------  239 (295)
T ss_dssp             TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECSC-------
T ss_pred             ccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecCCC-------
Confidence            457888888753211  1   11 11112345678999999999888777788899999 5788887776432       


Q ss_pred             CCceeEEEEecCCCCCEEEEE
Q 001163         1070 LRVYPLVIAGNPTDPNQFALG 1090 (1134)
Q Consensus      1070 ~~v~~~~~~~~p~~~~~l~s~ 1090 (1134)
                      ..++++  +|-..|.+.|.+.
T Consensus       240 ~~~T~~--~FGG~d~~~LyvT  258 (295)
T d2ghsa1         240 KQTTCP--AFIGPDASRLLVT  258 (295)
T ss_dssp             SBEEEE--EEESTTSCEEEEE
T ss_pred             CceEEE--EEeCCCCCEEEEE
Confidence            334555  6653354544443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.16  E-value=0.00072  Score=69.77  Aligned_cols=224  Identities=13%  Similarity=0.060  Sum_probs=145.8

Q ss_pred             eEEEEcCCCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCC
Q 001163          360 KSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK  439 (1134)
Q Consensus       360 ~~v~fsp~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~d  439 (1134)
                      .+..|++....|..+--..+.|.-||..+++...      |               .....+.++++.++|.+++++ .+
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~------~---------------~~~~~~~~i~~~~dg~l~va~-~~   78 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTV------H---------------ALPFMGSALAKISDSKQLIAS-DD   78 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE------E---------------ECSSCEEEEEEEETTEEEEEE-TT
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEE------E---------------ECCCCcEEEEEecCCCEEEEE-eC
Confidence            3677888666576666677889999998886432      1               123578899999999877764 45


Q ss_pred             CEEEEEEccCCceeeeeeeeec--CCCCEEEEEEecCCCceEEEEEeC----CCeEEEEECCCCceeEEecCCCcCEEEE
Q 001163          440 HIVHLYTYHGGDELRNHLEIEA--HVGSVNDLAFSYPNKQLSVVTCGE----DRVIKVWDAVTGTKQYIFEGHESPVYSI  513 (1134)
Q Consensus       440 g~v~iwd~~~~~~~~~~~~l~~--h~~~V~~v~~s~~~~~~~l~s~s~----d~~i~iwd~~~~~~~~~~~~h~~~v~~~  513 (1134)
                       .+.++|..+++... ......  ....++.+.+.|+|.  +.++...    .+.-.+|.+..++....+.. -..-+.+
T Consensus        79 -gl~~~d~~tg~~~~-l~~~~~~~~~~~~nd~~vd~~G~--iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~  153 (295)
T d2ghsa1          79 -GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSI  153 (295)
T ss_dssp             -EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEE
T ss_pred             -ccEEeecccceeeE-EeeeecCCCcccceeeEECCCCC--EEEEeccccccccceeEeeecCCcEEEEeec-cCCccee
Confidence             48999999887432 211211  123588999999998  4444332    23445676667765544433 2345677


Q ss_pred             eccccCCccEEEEecCCCcEEEEecCCCCce------ee--ecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCC
Q 001163          514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSR------VD--YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES  585 (1134)
Q Consensus       514 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~------~~--~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~  585 (1134)
                      +|+++.+ .++++-+..+.|..++++.....      ..  ..........+++..+|++.++.-.    .+.|..||. 
T Consensus       154 ~~s~d~~-~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~----~g~V~~~dp-  227 (295)
T d2ghsa1         154 CFSPDGT-TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVDRYDT-  227 (295)
T ss_dssp             EECTTSC-EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEEEECT-
T ss_pred             eecCCCc-eEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeC----CCceEEecC-
Confidence            7765442 35667777889999987543211      11  1223345678999999987766533    235999995 


Q ss_pred             CCeeEEEecCCCCCceEEEEEc-CCCCEEEEEe
Q 001163          586 EGAVKRTYHGLGKRSVGVVQFD-TTKNRFLAAG  617 (1134)
Q Consensus       586 ~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~  617 (1134)
                      +|+.+..+..... .+++++|. ++.+.|+..+
T Consensus       228 ~G~~~~~i~lP~~-~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         228 DGNHIARYEVPGK-QTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             TCCEEEEEECSCS-BEEEEEEESTTSCEEEEEE
T ss_pred             CCcEeeEecCCCC-ceEEEEEeCCCCCEEEEEE
Confidence            6888888876654 68899996 6666666554

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.70  E-value=0.0066  Score=68.50  Aligned_cols=174  Identities=9%  Similarity=0.015  Sum_probs=104.1

Q ss_pred             cEEEEEcccceEEEeccCccCceE---------EEEEeeCC---CEEEEEeCCCcEEEEECCCCccccceeee-------
Q 001163          908 SIQIYNVRVDEVKTKLKGHQKRIT---------GLAFSNTL---NVLVSSGADSQLCVWSTDGWEKQASKFLT-------  968 (1134)
Q Consensus       908 ~i~iwd~~~~~~~~~l~~h~~~V~---------~l~~s~d~---~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-------  968 (1134)
                      .|.-.|+++|+.+..++.....+.         -+.+..++   +.++.++.+|.+.++|-.+++........       
T Consensus       271 sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~  350 (560)
T d1kv9a2         271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK  350 (560)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred             eeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccc
Confidence            567778889988766654322221         12223344   36777889999999999988753211000       


Q ss_pred             e----------cC-----------CCCCCCCCceEEEEcCCCCEEEE-Ee------------------------------
Q 001163          969 I----------PN-----------GRTASALADTRVQFHLDQTHLLA-VH------------------------------  996 (1134)
Q Consensus       969 ~----------~~-----------~~~~~~~~v~~l~fs~dg~~l~~-~~------------------------------  996 (1134)
                      .          ..           ........-...+++|+..++++ ..                              
T Consensus       351 ~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (560)
T d1kv9a2         351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATD  430 (560)
T ss_dssp             ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCC
T ss_pred             cChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccC
Confidence            0          00           00000011235677888877776 22                              


Q ss_pred             ------eceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCCcccCCCCCC
Q 001163          997 ------ETQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPTAYLPTNPSL 1070 (1134)
Q Consensus       997 ------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~ 1070 (1134)
                            .|.+.-||+.+++.+-+.....+   ..+-.++-.|.++++++.||.++.+|..+|+.+.++....    +..+
T Consensus       431 ~p~~~~~G~l~A~D~~tGk~~W~~~~~~~---~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~----~~~~  503 (560)
T d1kv9a2         431 VPAAVVSGALLAWDPVKQKAAWKVPYPTH---WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQS----GIVA  503 (560)
T ss_dssp             CCGGGCEEEEEEEETTTTEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS----CCCS
T ss_pred             CCCcccccceEEEeCCCCeEeeeccCCCC---CCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCC----Cccc
Confidence                  25678889999988777654332   2222344567888899999999999999999998877443    2111


Q ss_pred             CceeEEEEecCCCCCEEEEEec
Q 001163         1071 RVYPLVIAGNPTDPNQFALGLT 1092 (1134)
Q Consensus      1071 ~v~~~~~~~~p~~~~~l~s~~~ 1092 (1134)
                        .++  .|..+..+||++.+.
T Consensus       504 --~P~--ty~~dGkqyv~v~aG  521 (560)
T d1kv9a2         504 --APM--TFELAGRQYVAIMAG  521 (560)
T ss_dssp             --CCE--EEEETTEEEEEEEEC
T ss_pred             --cCE--EEEECCEEEEEEEeC
Confidence              233  343434457666554

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.69  E-value=0.014  Score=65.82  Aligned_cols=194  Identities=13%  Similarity=0.080  Sum_probs=112.5

Q ss_pred             EEEEeCCCeEEEEECC-CCceeEEecCCCc----CE-------EEEeccccCCccEEEEecCCCcEEEEecCCCCceeee
Q 001163          480 VVTCGEDRVIKVWDAV-TGTKQYIFEGHES----PV-------YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY  547 (1134)
Q Consensus       480 l~s~s~d~~i~iwd~~-~~~~~~~~~~h~~----~v-------~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~  547 (1134)
                      +++.+.++.|.-.|.. +|+.+.++.....    ..       ..+++.  .  ..++.++.|+.+.-.|.++++.....
T Consensus        66 yv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~--~~i~~~~~~g~l~alda~tG~~~w~~  141 (571)
T d2ad6a1          66 YVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--A--GQIVKKQANGHLLALDAKTGKINWEV  141 (571)
T ss_dssp             EEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--T--TEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--C--CeEEEEeCCCcEEeeehhhhhhhccc
Confidence            3333346788888874 7999887742110    00       112221  1  46778888999988898888776654


Q ss_pred             cCCCC----CeeEEEECcCCCEEEEEec-CCCCCeEEEEEeCCCCeeEEEecCCCC------------------------
Q 001163          548 DAPGH----SSTMMAYSADGARLFSCGT-NKEGESYLVEWNESEGAVKRTYHGLGK------------------------  598 (1134)
Q Consensus       548 ~~~~~----~v~~~~~s~~~~~l~~~~~-~~~~~~~i~~wd~~~~~~~~~~~~~~~------------------------  598 (1134)
                      .....    .+++.-.-.++..++..+. +....+.|+-+|..+|+.+.++.....                        
T Consensus       142 ~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (571)
T d2ad6a1         142 EVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGT  221 (571)
T ss_dssp             ECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHH
T ss_pred             cccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccccc
Confidence            33211    1111111123333332221 111355799999999999987653311                        


Q ss_pred             ------------Cce-EEEEEcCCCCEEEEEeC----------------CCeEEEEEcCCCceeEEEecCCCC-------
Q 001163          599 ------------RSV-GVVQFDTTKNRFLAAGD----------------EFMIKFWDMDNVNLLASIDADGGL-------  642 (1134)
Q Consensus       599 ------------~~v-~~~~~~~~~~~l~~~~~----------------dg~i~iwd~~~~~~~~~~~~~~~~-------  642 (1134)
                                  ..+ ...++.+....++.+..                ...+.-.|.++|+.+-..+...+.       
T Consensus       222 ~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~  301 (571)
T d2ad6a1         222 KTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGV  301 (571)
T ss_dssp             HTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCC
T ss_pred             cccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCccccccccc
Confidence                        011 22466677777666543                346788899999988877753221       


Q ss_pred             CCcceEEEcCCCc---EEEEEECCCcEEEEEccCCcee
Q 001163          643 QASPCIRFNKEGI---LLAVSTNDNGIKILANADGIRL  677 (1134)
Q Consensus       643 ~~v~~v~~sp~~~---~l~~~~~dg~i~iw~~~~~~~~  677 (1134)
                      ..........+++   .++.++.+|.+.++|..+++.+
T Consensus       302 ~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i  339 (571)
T d2ad6a1         302 NQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLI  339 (571)
T ss_dssp             CCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccceeeeeccCccccceeeccccceEEEEecCCCcEe
Confidence            1111122223443   5677889999999999999544

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.65  E-value=0.017  Score=65.31  Aligned_cols=198  Identities=13%  Similarity=0.071  Sum_probs=114.9

Q ss_pred             EEEEEeCCCeEEEEEC-CCCceeEEecCCCc----------CE-EEEecccc--CCccEEEEecCCCcEEEEecCCCCce
Q 001163          479 SVVTCGEDRVIKVWDA-VTGTKQYIFEGHES----------PV-YSICPHHK--ENIQFIFSTATDGKIKAWLYDNLGSR  544 (1134)
Q Consensus       479 ~l~s~s~d~~i~iwd~-~~~~~~~~~~~h~~----------~v-~~~~~~~~--~~~~~l~s~s~dg~i~vwd~~~~~~~  544 (1134)
                      ++++++.++.+...|. ++|+.+.++.....          .+ ..+++...  ....+++.++.|+.|.-.|.++++..
T Consensus        65 ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~  144 (596)
T d1w6sa_          65 MYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETV  144 (596)
T ss_dssp             EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEE
T ss_pred             EEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCcee
Confidence            3445555677777776 57888887642110          01 12333222  12346888999999999999888877


Q ss_pred             eeecCCCCCe-eEEEECc--CCCEEEEEecC--CCCCeEEEEEeCCCCeeEEEecCCC----------------------
Q 001163          545 VDYDAPGHSS-TMMAYSA--DGARLFSCGTN--KEGESYLVEWNESEGAVKRTYHGLG----------------------  597 (1134)
Q Consensus       545 ~~~~~~~~~v-~~~~~s~--~~~~l~~~~~~--~~~~~~i~~wd~~~~~~~~~~~~~~----------------------  597 (1134)
                      ..+....... ..+.-+|  -+..++++...  ....+.|+-+|..+|+.+.++....                      
T Consensus       145 w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~  224 (596)
T d1w6sa_         145 WKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKG  224 (596)
T ss_dssp             EEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTT
T ss_pred             ccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccccccccccccccccccc
Confidence            7654322110 0111111  12344444321  1234679999999999998765321                      


Q ss_pred             --------------CC-ceEEEEEcCCCCEEEEEeC----------------CCeEEEEEcCCCceeEEEecCCCCC---
Q 001163          598 --------------KR-SVGVVQFDTTKNRFLAAGD----------------EFMIKFWDMDNVNLLASIDADGGLQ---  643 (1134)
Q Consensus       598 --------------~~-~v~~~~~~~~~~~l~~~~~----------------dg~i~iwd~~~~~~~~~~~~~~~~~---  643 (1134)
                                    .. .-...++.+....++.+..                ...|.-.|.++|+.+-.++...+..   
T Consensus       225 ~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~  304 (596)
T d1w6sa_         225 LGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDY  304 (596)
T ss_dssp             HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCC
T ss_pred             cccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccccCC
Confidence                          00 1123466677777766542                2457788999999888776432211   


Q ss_pred             ----CcceEEE-cCCC---cEEEEEECCCcEEEEEccCCce
Q 001163          644 ----ASPCIRF-NKEG---ILLAVSTNDNGIKILANADGIR  676 (1134)
Q Consensus       644 ----~v~~v~~-sp~~---~~l~~~~~dg~i~iw~~~~~~~  676 (1134)
                          ....+.. ..+|   ..++....+|.+.++|..+++.
T Consensus       305 d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~  345 (596)
T d1w6sa_         305 AGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGAL  345 (596)
T ss_dssp             CCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred             ccccceeeeeccccccccccceeccccccceeeecCCCCce
Confidence                1111111 2244   4677788999999999999943

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.63  E-value=0.048  Score=61.53  Aligned_cols=61  Identities=5%  Similarity=0.068  Sum_probs=46.3

Q ss_pred             ceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCC
Q 001163          998 TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPT 1061 (1134)
Q Consensus       998 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~ 1061 (1134)
                      |.|.-+|+.+|+.+-+....   .++.+-.++..|.++++++.||.++.+|..||+.+.++...
T Consensus       466 G~l~AiD~~TG~i~W~~~~~---~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~  526 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH---LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG  526 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES---SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CeEEEEcCCCCcEEeecCCC---CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECC
Confidence            56888899999887776532   22222234567888889999999999999999999887744

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.63  E-value=0.015  Score=65.74  Aligned_cols=197  Identities=12%  Similarity=0.101  Sum_probs=111.7

Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEecCCCc----------CE-EEEeccccCCccEEEEecCCCcEEEEecCCCCceeee
Q 001163          479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHES----------PV-YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY  547 (1134)
Q Consensus       479 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~----------~v-~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~  547 (1134)
                      .++.++.++.|.-+|.++|+.+.++.....          .+ ..+.+.  .  ..++.++.|+.+.-.|..+++.....
T Consensus        79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~--~~v~~~t~~g~l~alda~tG~~~W~~  154 (573)
T d1kb0a2          79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--K--GKVYVGAWDGRLIALDAATGKEVWHQ  154 (573)
T ss_dssp             EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--T--TEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--C--CcEEEEecccceeeeccccccceecc
Confidence            366777888999999999999987742110          01 011111  1  35677788888888888887776554


Q ss_pred             cCCCCCe--eEEEECc--CCCEEEEEec--CCCCCeEEEEEeCCCCeeEEEecCCCC-----------------------
Q 001163          548 DAPGHSS--TMMAYSA--DGARLFSCGT--NKEGESYLVEWNESEGAVKRTYHGLGK-----------------------  598 (1134)
Q Consensus       548 ~~~~~~v--~~~~~s~--~~~~l~~~~~--~~~~~~~i~~wd~~~~~~~~~~~~~~~-----------------------  598 (1134)
                      .......  ..+.-.|  -+..++++..  +....+.|+.+|..+|+.+.++.....                       
T Consensus       155 ~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~  234 (573)
T d1kb0a2         155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK  234 (573)
T ss_dssp             ETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred             cCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCCc
Confidence            3321110  0111111  1234444332  122345799999999999988744311                       


Q ss_pred             -------Cce-EEEEEcCCCCEEEEEeC-------------------CCeEEEEEcCCCceeEEEecCCCC-------CC
Q 001163          599 -------RSV-GVVQFDTTKNRFLAAGD-------------------EFMIKFWDMDNVNLLASIDADGGL-------QA  644 (1134)
Q Consensus       599 -------~~v-~~~~~~~~~~~l~~~~~-------------------dg~i~iwd~~~~~~~~~~~~~~~~-------~~  644 (1134)
                             ..+ ...++.++...++.+..                   ...|.-.|.++++..-..+...+.       ..
T Consensus       235 ~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~  314 (573)
T d1kb0a2         235 WWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQP  314 (573)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred             eeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccccccce
Confidence                   011 12456666666654331                   124666788888877665532221       11


Q ss_pred             cceEEEcCCC---cEEEEEECCCcEEEEEccCCceeEE
Q 001163          645 SPCIRFNKEG---ILLAVSTNDNGIKILANADGIRLLR  679 (1134)
Q Consensus       645 v~~v~~sp~~---~~l~~~~~dg~i~iw~~~~~~~~~~  679 (1134)
                      ........++   ..++.++.+|.+.++|..+++....
T Consensus       315 ~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~  352 (573)
T d1kb0a2         315 MILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISA  352 (573)
T ss_dssp             CEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             eeecceecCCCceeeeeeccccceeEEecccccccccc
Confidence            1112222233   4677788899999999999954433

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.60  E-value=0.0034  Score=65.21  Aligned_cols=196  Identities=10%  Similarity=0.107  Sum_probs=125.4

Q ss_pred             EEEEc---CCCCeEEEee--CCeEEEEEccCCeEEEEecC-CCCCeEEEEEcCC-CCcEEEEEeCCC-------------
Q 001163          848 CFALS---KNDSYVMSAS--GGKISLFNMMTFKTMTTFMP-PPPAATFLAFHPQ-DNNIIAIGMEDS-------------  907 (1134)
Q Consensus       848 ~v~~s---~dg~~la~~s--dg~i~lwd~~~~~~~~~~~~-~~~~v~~l~~sp~-~~~~la~g~~dg-------------  907 (1134)
                      .+.+.   +||+++.+..  ++.|.+.|+.+.++...+.. ....+..+...++ ...+++.++.+.             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            44554   4899999987  68899999999998765543 3345676666441 445777666532             


Q ss_pred             -----cEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCC---------------cEEEEEC-----------
Q 001163          908 -----SIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADS---------------QLCVWST-----------  956 (1134)
Q Consensus       908 -----~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg---------------~i~iwd~-----------  956 (1134)
                           .+.++|..+.+....... .+....+.+++||+++++.+.+.               .+.++++           
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk  247 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  247 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             hhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence                 356788888877655542 23456789999999999877542               1333332           


Q ss_pred             ------------CCCcc-ccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE--eeceEEEEeCCCcccc--------ee
Q 001163          957 ------------DGWEK-QASKFLTIPNGRTASALADTRVQFHLDQTHLLAV--HETQIAIYEAPKLECL--------KQ 1013 (1134)
Q Consensus       957 ------------~~~~~-~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~i~iwd~~~~~~~--------~~ 1013 (1134)
                                  ..... .....+.+..       ....+.++|||++++++  .+.++.|+|++.....        ..
T Consensus       248 ~~eingV~VVD~~~~~~~~v~~yIPVpK-------sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~  320 (459)
T d1fwxa2         248 YQELNGVKVVDGRKEASSLFTRYIPIAN-------NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA  320 (459)
T ss_dssp             SEEETTEEEEECSGG--CSSEEEEEEES-------SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGG
T ss_pred             cEEeCCceeecccccCCcceeEEEecCC-------CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCcccc
Confidence                        21000 0011122222       24568999999999995  6789999999743221        11


Q ss_pred             ecc-CCCccCEEEEEEccCCCEEEEEecCCcEEEeecCC
Q 001163         1014 FVP-REASGPITHATYSCDSQSIYVAFEEGSVGVLTAST 1051 (1134)
Q Consensus      1014 ~~~-~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~ 1051 (1134)
                      ... ....-....-+|..+|.-..|.--|..|.-|++..
T Consensus       321 ~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         321 VVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             EEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             EEeecccCcCccccccCCCceEEEEeeccceEEEEecch
Confidence            110 01134567788988886556666899999999854

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=0.046  Score=54.50  Aligned_cols=215  Identities=9%  Similarity=-0.030  Sum_probs=130.1

Q ss_pred             CCCCEEEEEEcCCCCEEEEEe-CCCEEEEEEccCCceeee-eeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEEC
Q 001163          417 YTASVNRVMWSPDGTLFGVAY-SKHIVHLYTYHGGDELRN-HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDA  494 (1134)
Q Consensus       417 h~~~V~~l~~spd~~~las~s-~dg~v~iwd~~~~~~~~~-~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~  494 (1134)
                      ....+.+++|.+..+.|.... .++.|.-.++........ ...+......+..+++.+.+.. +.++-...+.|.+.++
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~-lY~~d~~~~~I~v~~~  106 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADT  106 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccce-EEEEecCCCEEEeEec
Confidence            345678999999888777664 456676666654221111 1112233345778899887775 4455566789999998


Q ss_pred             CCCceeEEecCCCcCEEEEeccccCCccEEEEe-cCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCC
Q 001163          495 VTGTKQYIFEGHESPVYSICPHHKENIQFIFST-ATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK  573 (1134)
Q Consensus       495 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~  573 (1134)
                      ........+.........+++++.. |.++++- +..+.|...+++...........-.....+++.+.++.|+.+..  
T Consensus       107 ~g~~~~~~~~~~~~~P~~l~vd~~~-g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~--  183 (266)
T d1ijqa1         107 KGVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS--  183 (266)
T ss_dssp             TSSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET--
T ss_pred             CCceEEEEEcCCCCCcceEEEEccc-CeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecC--
Confidence            7666555555555667888886643 3444443 33456766777654444433333346688999998888887742  


Q ss_pred             CCCeEEEEEeCCCCeeEEEecCCCC-CceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEec
Q 001163          574 EGESYLVEWNESEGAVKRTYHGLGK-RSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDA  638 (1134)
Q Consensus       574 ~~~~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~  638 (1134)
                       ....|...++.............. .....+++.  +.+|+... .++.|+..+..+++....+..
T Consensus       184 -~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~~  247 (266)
T d1ijqa1         184 -KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAE  247 (266)
T ss_dssp             -TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred             -CcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcceEEEEc
Confidence             244688888865543333333221 234556665  34555554 778888888888776666543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.57  E-value=0.063  Score=60.45  Aligned_cols=61  Identities=15%  Similarity=0.089  Sum_probs=46.0

Q ss_pred             ceEEEEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCC
Q 001163          998 TQIAIYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPT 1061 (1134)
Q Consensus       998 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~ 1061 (1134)
                      |.|.-||..+++.+-+....   ..+.+-.++..|.+++.|+.||.++.+|..+|+.+.++...
T Consensus       453 G~l~A~D~~TG~~~W~~~~~---~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~  513 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMER---FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIP  513 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             ceEEEEeCCCCceecccCCC---CCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECC
Confidence            67888999999887665422   22222234457888889999999999999999999887744

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.57  E-value=0.012  Score=66.23  Aligned_cols=199  Identities=10%  Similarity=0.070  Sum_probs=114.8

Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEecCCCcC----EE---EEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCC
Q 001163          479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESP----VY---SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG  551 (1134)
Q Consensus       479 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~----v~---~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~  551 (1134)
                      .|+.++.++.|.-.|.++|+.+.++......    ..   .+.......+..++.+..|+.|.-.|..+++.........
T Consensus        68 ~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~  147 (560)
T d1kv9a2          68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTD  147 (560)
T ss_dssp             EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEECSC
T ss_pred             EEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeCCCEEEEEECCCCcEEeccCccC
Confidence            3666777889999999999999886422110    00   0000000012467888888998888888887776654322


Q ss_pred             C-CeeEEEECc---CCCEEEEEec--CCCCCeEEEEEeCCCCeeEEEecCCCC---------------------------
Q 001163          552 H-SSTMMAYSA---DGARLFSCGT--NKEGESYLVEWNESEGAVKRTYHGLGK---------------------------  598 (1134)
Q Consensus       552 ~-~v~~~~~s~---~~~~l~~~~~--~~~~~~~i~~wd~~~~~~~~~~~~~~~---------------------------  598 (1134)
                      . ....+.-.|   ++ .++.+..  .....+.|.-+|.++|+.+.++.....                           
T Consensus       148 ~~~~~~~~~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (560)
T d1kv9a2         148 PAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLG  226 (560)
T ss_dssp             TTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHC
T ss_pred             cccceeeeeeeeeecC-cccccccceeccccceEEEEECCCceEEeeeeeccccccCCcccccccccccccccccccccc
Confidence            1 111111111   23 3333321  122345799999999999988753211                           


Q ss_pred             --Cc-eEEEEEcCCCCEEEEEeC-------------------CCeEEEEEcCCCceeEEEecCCCCCC-------cceEE
Q 001163          599 --RS-VGVVQFDTTKNRFLAAGD-------------------EFMIKFWDMDNVNLLASIDADGGLQA-------SPCIR  649 (1134)
Q Consensus       599 --~~-v~~~~~~~~~~~l~~~~~-------------------dg~i~iwd~~~~~~~~~~~~~~~~~~-------v~~v~  649 (1134)
                        .. -...++.+....++.+..                   ...|.-.|.++++..-..+...+...       ..-+.
T Consensus       227 ~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~  306 (560)
T d1kv9a2         227 GGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAE  306 (560)
T ss_dssp             EECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEE
T ss_pred             CCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeee
Confidence              01 112566777776665431                   24577778899998877664332110       11122


Q ss_pred             EcCCC---cEEEEEECCCcEEEEEccCCceeE
Q 001163          650 FNKEG---ILLAVSTNDNGIKILANADGIRLL  678 (1134)
Q Consensus       650 ~sp~~---~~l~~~~~dg~i~iw~~~~~~~~~  678 (1134)
                      ...++   ..++.++.+|.+.++|..+++...
T Consensus       307 ~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~  338 (560)
T d1kv9a2         307 LNIDGKPRKVLMQAPKNGFFYVLDRTNGKLIS  338 (560)
T ss_dssp             EEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred             eecCCceeeeeeecCccceEEEEecCCCcccc
Confidence            22234   367778889999999999995443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.57  E-value=0.049  Score=54.13  Aligned_cols=235  Identities=10%  Similarity=-0.014  Sum_probs=144.7

Q ss_pred             EEEEEeCCCEEEEEEccCCcee--eeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeEEecCCCcC
Q 001163          432 LFGVAYSKHIVHLYTYHGGDEL--RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESP  509 (1134)
Q Consensus       432 ~las~s~dg~v~iwd~~~~~~~--~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~  509 (1134)
                      +|+.+.. +.|+-.+++.....  .....+..+...+..++|.+.++. ++.+-..++.|+..++..+.....+......
T Consensus         3 fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~-iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~   80 (263)
T d1npea_           3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (263)
T ss_dssp             EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             EEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCE-EEEEECCCCeEEEEEcccCCcEEEEEecccc
Confidence            4444433 35666776543311  111124445556888999988775 3455566788998888766554444444456


Q ss_pred             EEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCee
Q 001163          510 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV  589 (1134)
Q Consensus       510 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~  589 (1134)
                      +.++++....+ .+.++-...+.|.+.+++.................+++.|...+++...... ....|..-++.....
T Consensus        81 p~~iAvD~~~~-~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~-~~~~I~r~~~dG~~~  158 (263)
T d1npea_          81 PEGIALDHLGR-TIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-DNPKIETSHMDGTNR  158 (263)
T ss_dssp             EEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS-SSCEEEEEETTSCCC
T ss_pred             ccEEEEeccCC-eEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCC-CCcEEEEecCCCCCc
Confidence            78888865442 4556667778999999886655444444345678999999888877654322 233455556654433


Q ss_pred             EEEecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEE
Q 001163          590 KRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKI  668 (1134)
Q Consensus       590 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~i  668 (1134)
                      ..... ..-.....+++.+.++.|+.+. ..+.|...++........+...   .....+++. ++.+..+-...+.|..
T Consensus       159 ~~i~~-~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~---~~P~~lav~-~~~lYwtd~~~~~I~~  233 (263)
T d1npea_         159 RILAQ-DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL---QYPFAVTSY-GKNLYYTDWKTNSVIA  233 (263)
T ss_dssp             EEEEC-TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC---CSEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             eeeee-ecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCC---CCcEEEEEE-CCEEEEEECCCCEEEE
Confidence            33222 2222567899998888887765 6788999999766554444432   223467765 3444444446688888


Q ss_pred             EEccCCc
Q 001163          669 LANADGI  675 (1134)
Q Consensus       669 w~~~~~~  675 (1134)
                      .+..++.
T Consensus       234 ~~~~~g~  240 (263)
T d1npea_         234 MDLAISK  240 (263)
T ss_dssp             EETTTTE
T ss_pred             EECCCCc
Confidence            8888773

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.56  E-value=0.0076  Score=64.72  Aligned_cols=279  Identities=6%  Similarity=-0.035  Sum_probs=141.9

Q ss_pred             eEEEEcCCCCeEEEEEeCC-----C------cEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcC
Q 001163          360 KSMDFHPVQQILLVVGTNM-----G------DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP  428 (1134)
Q Consensus       360 ~~v~fsp~g~~lla~gs~d-----g------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  428 (1134)
                      .......+|+ +++.|+.+     +      .+.+||..++.-.....                ....|.......++.+
T Consensus        23 ~~a~~~~~gk-v~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~----------------~~~~~~~~~~~~~~~~   85 (387)
T d1k3ia3          23 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV----------------TVTKHDMFCPGISMDG   85 (387)
T ss_dssp             EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE----------------EECSCCCSSCEEEECT
T ss_pred             EEEEEeeCCE-EEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCC----------------CCCCcccceeEEEEec
Confidence            3444556777 55666532     1      37789998876432100                0122333345668899


Q ss_pred             CCCEEEEEeCC-CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCC------CeEEEEECCCCceeE
Q 001163          429 DGTLFGVAYSK-HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED------RVIKVWDAVTGTKQY  501 (1134)
Q Consensus       429 d~~~las~s~d-g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d------~~i~iwd~~~~~~~~  501 (1134)
                      ||++++.|+.+ ..+.+||..+..-.. ...+... ..-..++..+||+  +++.|+.+      ..+.+||..+.+-..
T Consensus        86 ~g~i~v~Gg~~~~~~~~yd~~~~~w~~-~~~~~~~-r~~~~~~~~~dG~--v~v~GG~~~~~~~~~~v~~yd~~~~~W~~  161 (387)
T d1k3ia3          86 NGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQVA-RGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWTS  161 (387)
T ss_dssp             TSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSSC-CSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEEE
T ss_pred             CCcEEEeecCCCcceeEecCccCcccc-ccccccc-ccccceeeecCCc--eeeeccccccccccceeeeecCCCCceee
Confidence            99999998765 579999998875432 2122221 1224567778888  67777643      368999988775432


Q ss_pred             Eec---------CCC------cCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecC------CC---CCeeEE
Q 001163          502 IFE---------GHE------SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA------PG---HSSTMM  557 (1134)
Q Consensus       502 ~~~---------~h~------~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~------~~---~~v~~~  557 (1134)
                      .-.         .+.      .....+   ...+|..++.+..++.+.+++............      ..   ..-..+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (387)
T d1k3ia3         162 LPNAKVNPMLTADKQGLYRSDNHAWLF---GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM  238 (387)
T ss_dssp             ETTSCSGGGCCCCTTGGGTTTCSCCEE---ECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred             cCCCcccccccccccceeeccceeEEE---EeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEE
Confidence            110         000      001111   123445666666666666666554322211100      00   011122


Q ss_pred             EECcCCCEEEEEecCCCC----CeEEEEEeCC---CCeeEEEecC--CCCCceEEEEEcCCCCEEEEEeCCC--------
Q 001163          558 AYSADGARLFSCGTNKEG----ESYLVEWNES---EGAVKRTYHG--LGKRSVGVVQFDTTKNRFLAAGDEF--------  620 (1134)
Q Consensus       558 ~~s~~~~~l~~~~~~~~~----~~~i~~wd~~---~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg--------  620 (1134)
                      .-..+++.++.++.....    .....+.+..   ..........  .....-.+....++++.++.|+.++        
T Consensus       239 ~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~  318 (387)
T d1k3ia3         239 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST  318 (387)
T ss_dssp             EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred             eeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCc
Confidence            223467777776643211    1122333322   1111111111  1111223455668899999888431        


Q ss_pred             ---eEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEEC
Q 001163          621 ---MIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTN  662 (1134)
Q Consensus       621 ---~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~  662 (1134)
                         .+.+||..+.+....-........-....+.+||+.++.|+.
T Consensus       319 ~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         319 PVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             BCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             EeceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence               478899887754332111110001123446789999999874

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.56  E-value=0.0074  Score=64.80  Aligned_cols=260  Identities=13%  Similarity=0.072  Sum_probs=132.4

Q ss_pred             cccCCCCCcccccCCCCCCCCCCeeEEEEcCCCCeEEEee-C-CeEEEEEccCCeEEEEecCC-CCCeEEEEEcCCCCcE
Q 001163          823 QLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-G-GKISLFNMMTFKTMTTFMPP-PPAATFLAFHPQDNNI  899 (1134)
Q Consensus       823 ~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~la~~s-d-g~i~lwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~~  899 (1134)
                      .+||+.++...........+.......++.+||++++.|. + ..+.+||..+..-...-... ...-.+++..+ |+++
T Consensus        55 ~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~-dG~v  133 (387)
T d1k3ia3          55 SSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRV  133 (387)
T ss_dssp             EEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCE
T ss_pred             EEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeec-CCce
Confidence            3566666654332111111333445678889999999987 3 67999999876543321111 12234566677 7888


Q ss_pred             EEEEeCC------CcEEEEEcccceEEEe--cc-------Ccc-----CceEEEEEeeCCCEEEEEeCCCcEEEEECCCC
Q 001163          900 IAIGMED------SSIQIYNVRVDEVKTK--LK-------GHQ-----KRITGLAFSNTLNVLVSSGADSQLCVWSTDGW  959 (1134)
Q Consensus       900 la~g~~d------g~i~iwd~~~~~~~~~--l~-------~h~-----~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~  959 (1134)
                      ++.|+.+      ..+.+||..+.+-...  ..       .+.     +.-..+...++|+.++.++.++.+.+++..+.
T Consensus       134 ~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~  213 (387)
T d1k3ia3         134 FTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG  213 (387)
T ss_dssp             EEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred             eeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccC
Confidence            8888753      3689999887643211  10       011     01112333467888888887777777777665


Q ss_pred             ccccceeeeecCCCCCCCCCceEEEE-cCCCCEEEEE-ee--------ceEEEEeCCCcccc-eeecc---CCCccCEEE
Q 001163          960 EKQASKFLTIPNGRTASALADTRVQF-HLDQTHLLAV-HE--------TQIAIYEAPKLECL-KQFVP---REASGPITH 1025 (1134)
Q Consensus       960 ~~~~~~~~~~~~~~~~~~~~v~~l~f-s~dg~~l~~~-~d--------~~i~iwd~~~~~~~-~~~~~---~~h~~~v~~ 1025 (1134)
                      ....................-.++.+ ..+++.++.+ ..        ....+.+....... ..+..   -.+...-.+
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~  293 (387)
T d1k3ia3         214 DVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHT  293 (387)
T ss_dssp             EEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCE
T ss_pred             cEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccce
Confidence            42221111111111110011122333 3467766663 11        12333333221111 01110   011122234


Q ss_pred             EEEccCCCEEEEEecC-----------CcEEEeecCCCcceeecCCCcccCC-CCCCCceeEEEEecCCCCCEEEEEec
Q 001163         1026 ATYSCDSQSIYVAFEE-----------GSVGVLTASTLRLRCRINPTAYLPT-NPSLRVYPLVIAGNPTDPNQFALGLT 1092 (1134)
Q Consensus      1026 ~~~s~dg~~l~s~s~D-----------g~i~vwd~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~p~~~~~l~s~~~ 1092 (1134)
                      .+..+||++++.|+.+           .++.+||.++.+... +. ....+. .|+.      ....+ |++.|+.|+.
T Consensus       294 ~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~-~~-~~~~~R~~Hs~------a~l~~-dG~v~v~GG~  363 (387)
T d1k3ia3         294 SVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK-QN-PNSIVRVYHSI------SLLLP-DGRVFNGGGG  363 (387)
T ss_dssp             EEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE-CC-CCSSCCCTTEE------EEECT-TSCEEEEECC
T ss_pred             eeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEE-CC-CCCCcccceEE------EEECC-CCEEEEEeCC
Confidence            5566899999998853           147889987775432 21 111121 1221      12235 7899999884

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.53  E-value=0.037  Score=59.90  Aligned_cols=248  Identities=10%  Similarity=0.043  Sum_probs=135.6

Q ss_pred             eeEEEEcCCCCeEEEEEeCCC----cEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEE
Q 001163          359 VKSMDFHPVQQILLVVGTNMG----DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG  434 (1134)
Q Consensus       359 V~~v~fsp~g~~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~la  434 (1134)
                      +..+++||||++++.+-+.+|    .|++.|+.+|+.+.. .+                 .  ......++|++|++.|+
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~-~i-----------------~--~~~~~~~~W~~D~~~~~  186 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-VL-----------------E--RVKFSCMAWTHDGKGMF  186 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-EE-----------------E--EECSCCEEECTTSSEEE
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc-cc-----------------c--cccccceEEcCCCCEEE
Confidence            345678999998776655555    799999999986542 11                 0  11224689999999887


Q ss_pred             EEeCC----------------CEEEEEEccCCceeeeeeeeecCC--CCEEEEEEecCCCceEEEEEe-CCCeEEE--EE
Q 001163          435 VAYSK----------------HIVHLYTYHGGDELRNHLEIEAHV--GSVNDLAFSYPNKQLSVVTCG-EDRVIKV--WD  493 (1134)
Q Consensus       435 s~s~d----------------g~v~iwd~~~~~~~~~~~~l~~h~--~~V~~v~~s~~~~~~~l~s~s-~d~~i~i--wd  493 (1134)
                      ....+                ..|..|.+.+...-. ...+....  ..+..+..+.+++.+++.+.+ .+....+  .|
T Consensus       187 Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d-~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d  265 (430)
T d1qfma1         187 YNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED-ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCD  265 (430)
T ss_dssp             EEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEE
T ss_pred             EEEeccccCcccccccccCCcceEEEEECCCCcccc-ccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEee
Confidence            65432                257788887754321 11233333  346677889999853222322 2333344  45


Q ss_pred             CCCCc--------eeEEecCCCcCEEEEeccccCCccEEEEec---CCCcEEEEecCCCCce--e-eecCCCCCeeEEEE
Q 001163          494 AVTGT--------KQYIFEGHESPVYSICPHHKENIQFIFSTA---TDGKIKAWLYDNLGSR--V-DYDAPGHSSTMMAY  559 (1134)
Q Consensus       494 ~~~~~--------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~~--~-~~~~~~~~v~~~~~  559 (1134)
                      +....        ....+......+..+..  .+ +.+++...   .++.|...++......  . .+..+...+..-.+
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~  342 (430)
T d1qfma1         266 LQQESNGITGILKWVKLIDNFEGEYDYVTN--EG-TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVA  342 (430)
T ss_dssp             GGGSSSSSCSSCCCEEEECSSSSCEEEEEE--ET-TEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEE
T ss_pred             CCCcccccccccceeEeecccccceEEEec--CC-ceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEE
Confidence            43221        11222222333332221  12 23333332   2456666676654322  1 22223334444444


Q ss_pred             CcCCCEEEEEecCCCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEE--e--CCCeEEEEEcCCCce
Q 001163          560 SADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAA--G--DEFMIKFWDMDNVNL  632 (1134)
Q Consensus       560 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~--~dg~i~iwd~~~~~~  632 (1134)
                      +..+.+|+....+ ++...|.+++..++.....+.... ..+..+...++...+...  +  .-.+++-+|+.+++.
T Consensus       343 ~~~~~~lvl~~~~-~~~~~l~v~~~~~~~~~~~~~~~~-~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         343 CVRSNFLVLCYLH-DVKNTLQLHDLATGALLKIFPLEV-GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             EETTTEEEEEEEE-TTEEEEEEEETTTCCEEEEECCCS-SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             EEECCEEEEEEEc-CCEeEEEEEECCCCcEEEecCCCC-ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence            5555666655433 457789999999887765544333 255555555555544432  2  346788899988764

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.50  E-value=0.02  Score=64.59  Aligned_cols=185  Identities=10%  Similarity=0.115  Sum_probs=98.5

Q ss_pred             eEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccc-eEEEeccC-ccC-ceEE
Q 001163          857 YVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD-EVKTKLKG-HQK-RITG  932 (1134)
Q Consensus       857 ~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~-~~~~~l~~-h~~-~V~~  932 (1134)
                      .++.++ +|.+.++|..+++.+.......... .-.+.+ .+..+..-.         ...+ +....+.+ +.+ .-..
T Consensus       329 ~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~-~~~~~~-~~~~~~~~~---------~~~~~~~~~~~pg~~Gg~~w~~  397 (573)
T d1kb0a2         329 VILHAPKNGFFFVLDRTNGKFISAKNFVPVNW-ASGYDK-HGKPIGIAA---------ARDGSKPQDAVPGPYGAHNWHP  397 (573)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEEESSCCSS-EEEECT-TSCEEECGG---------GGCTTSCEECSSCTTCSSCSSC
T ss_pred             eeeeccccceeEEecccccccccccccccccc-cccccc-ccceeeeee---------ccccccceEEeecccCCccccc
Confidence            455555 7999999999999987765332211 111122 222211110         0001 11111111 111 1224


Q ss_pred             EEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEEeeceEEEEeCCCcccce
Q 001163          933 LAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLK 1012 (1134)
Q Consensus       933 l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~iwd~~~~~~~~ 1012 (1134)
                      .+++|+...++....+....++.....+....     ..+............+ +++.-.....-|.+.-||+.+++.+-
T Consensus       398 ~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~-~~~~p~~~~~~G~l~AiD~~tGk~~W  471 (573)
T d1kb0a2         398 MSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQA-----GPGKPQSGTGWNTAKF-FNAEPPKSKPFGRLLAWDPVAQKAAW  471 (573)
T ss_dssp             CEEETTTTEEEEEEEECCCEEEECTTCCTTCC-----CTTSTTGGGTCCCCEE-ECSSCCCSCCEEEEEEEETTTTEEEE
T ss_pred             cccCCCcceEEeeccccceeeecccccccccC-----CCCccccccccccccc-cccCCCCCCCcccEEEeCCCCCceEe
Confidence            68899999999888888777776655332110     0000000000000111 00000000123678889999999887


Q ss_pred             eeccCCCccCEEEEEEccCCCEEEEEecCCcEEEeecCCCcceeecCCC
Q 001163         1013 QFVPREASGPITHATYSCDSQSIYVAFEEGSVGVLTASTLRLRCRINPT 1061 (1134)
Q Consensus      1013 ~~~~~~h~~~v~~~~~s~dg~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~ 1061 (1134)
                      +.....   +..+-..+-+|.++++++.||.++.+|..+|+.+..+...
T Consensus       472 ~~~~~~---p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~  517 (573)
T d1kb0a2         472 SVEHVS---PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG  517 (573)
T ss_dssp             EEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             eecCCC---CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECC
Confidence            765322   2222234557889999999999999999999999887744

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.079  Score=52.68  Aligned_cols=233  Identities=7%  Similarity=-0.005  Sum_probs=139.7

Q ss_pred             EEEEEeCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCc----eeEEecCCC
Q 001163          432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT----KQYIFEGHE  507 (1134)
Q Consensus       432 ~las~s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~----~~~~~~~h~  507 (1134)
                      +|+.+... .|+-.++.+.....    +......+.+++|.+..+. ++.+-..++.|.-.++....    ....+...-
T Consensus         3 fLl~s~~~-~I~~~~l~~~~~~~----~~~~~~~~~~id~d~~~~~-lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~   76 (266)
T d1ijqa1           3 YLFFTNRH-EVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI   76 (266)
T ss_dssp             EEEEECBS-SEEEEETTSCCCEE----EECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred             EEEEECCC-eEEEEECCCCccee----eeCCCCceEEEEEEeCCCE-EEEEECCCCEEEEEEecCCCCCcceEEEEeCCC
Confidence            34444333 47888887654322    3334556789999988775 34444556677766654321    112222233


Q ss_pred             cCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCC
Q 001163          508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG  587 (1134)
Q Consensus       508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~  587 (1134)
                      ..+.++++.+..+ .+.++-...+.|.+.+++.................+++.|...+|......  ....|...++...
T Consensus        77 ~~p~glAvD~~~~-~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~--~~~~I~r~~~dGs  153 (266)
T d1ijqa1          77 QAPDGLAVDWIHS-NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV  153 (266)
T ss_dssp             SCCCEEEEETTTT-EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred             CCcceEEEeeccc-eEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccC--CCcceeEeccCCC
Confidence            4456677755443 566666777899999998766555555555677899999877777665432  2345777777544


Q ss_pred             eeEEEecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcE
Q 001163          588 AVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGI  666 (1134)
Q Consensus       588 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i  666 (1134)
                      ....... ..-.....+++.+.++.|+.+. ..+.|...++....................+++. ++.+..+-..++.|
T Consensus       154 ~~~~l~~-~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I  231 (266)
T d1ijqa1         154 DIYSLVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI  231 (266)
T ss_dssp             CEEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred             ceecccc-cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeE
Confidence            4333333 2223568899999888877775 6789999999765544444433322334466665 33444444466788


Q ss_pred             EEEEccCCc
Q 001163          667 KILANADGI  675 (1134)
Q Consensus       667 ~iw~~~~~~  675 (1134)
                      ...+..++.
T Consensus       232 ~~~~~~~g~  240 (266)
T d1ijqa1         232 FSANRLTGS  240 (266)
T ss_dssp             EEEETTTCC
T ss_pred             EEEECCCCc
Confidence            777777663

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.28  E-value=0.12  Score=57.98  Aligned_cols=193  Identities=11%  Similarity=0.031  Sum_probs=110.7

Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEecCCC--------cCE-EEEeccccCCccEEEEecCCCcEEEEecCCCCceeeecC
Q 001163          479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHE--------SPV-YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA  549 (1134)
Q Consensus       479 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~--------~~v-~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~  549 (1134)
                      .|+.++.++.|.-.|..+|+.+.++....        ..+ ..+++.  .  ..++.++.|+.+.-.|..+++.......
T Consensus        70 ~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~--~--~~i~~~t~~~~l~alda~tG~~~W~~~~  145 (582)
T d1flga_          70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY--G--DKVFFGTLDASVVALNKNTGKVVWKKKF  145 (582)
T ss_dssp             EEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE--T--TEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred             EEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEe--C--CceEEecCCCeEEEecccccceeeeecc
Confidence            46778888999999999999998774211        000 011111  1  4577788889888888888776654332


Q ss_pred             CCC----Ce--eEEEEC--cCCCEEEEEecC---CCCCeEEEEEeCCCCeeEEEecCCCC--------------------
Q 001163          550 PGH----SS--TMMAYS--ADGARLFSCGTN---KEGESYLVEWNESEGAVKRTYHGLGK--------------------  598 (1134)
Q Consensus       550 ~~~----~v--~~~~~s--~~~~~l~~~~~~---~~~~~~i~~wd~~~~~~~~~~~~~~~--------------------  598 (1134)
                      ...    ..  .-..+.  ..+..++..+..   ......|.-+|..+|+.+.++.....                    
T Consensus       146 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~  225 (582)
T d1flga_         146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS  225 (582)
T ss_dssp             SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred             cCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCcccccccccccccccccccc
Confidence            111    00  001111  123333333211   12245688899999998877644321                    


Q ss_pred             -------------------Cc-eEEEEEcCCCCEEEEEeC------------------------CCeEEEEEcCCCceeE
Q 001163          599 -------------------RS-VGVVQFDTTKNRFLAAGD------------------------EFMIKFWDMDNVNLLA  634 (1134)
Q Consensus       599 -------------------~~-v~~~~~~~~~~~l~~~~~------------------------dg~i~iwd~~~~~~~~  634 (1134)
                                         .. -..+++.+..+.++.+..                        ...|.-.|..+++..-
T Consensus       226 ~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W  305 (582)
T d1flga_         226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW  305 (582)
T ss_dssp             SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred             CCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhhh
Confidence                               01 123567777777766531                        2346777888998887


Q ss_pred             EEecCCCCCCc-------ceEEEc-CCC---cEEEEEECCCcEEEEEccCCc
Q 001163          635 SIDADGGLQAS-------PCIRFN-KEG---ILLAVSTNDNGIKILANADGI  675 (1134)
Q Consensus       635 ~~~~~~~~~~v-------~~v~~s-p~~---~~l~~~~~dg~i~iw~~~~~~  675 (1134)
                      .++...|....       .-+.+. .++   ..++..+.++.+.++|..+++
T Consensus       306 ~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG~  357 (582)
T d1flga_         306 FYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGK  357 (582)
T ss_dssp             EEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred             cccccccccccccccccccccccccccccccceeEeecccccEEeecccCCc
Confidence            77654332111       111121 123   356667889999999999983

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.23  E-value=0.12  Score=51.09  Aligned_cols=224  Identities=11%  Similarity=0.040  Sum_probs=138.5

Q ss_pred             cCCCCEEEEEEcCCCCEEEEE-eCCCEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEEC
Q 001163          416 DYTASVNRVMWSPDGTLFGVA-YSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDA  494 (1134)
Q Consensus       416 ~h~~~V~~l~~spd~~~las~-s~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~  494 (1134)
                      .+...+.+++|.+..+.|... ..++.|+..++.++....   .+..-...+..+++..-+.. +.++-...+.|.+.++
T Consensus        33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~---v~~~~~~~p~~iAvD~~~~~-lY~~d~~~~~I~~~~~  108 (263)
T d1npea_          33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKM  108 (263)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred             cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEE---EEEeccccccEEEEeccCCe-EEEeccCCCEEEEEec
Confidence            345568889999987777766 456788888887654322   23333356889999876664 3455566789999998


Q ss_pred             CCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCc--EEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecC
Q 001163          495 VTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGK--IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN  572 (1134)
Q Consensus       495 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~  572 (1134)
                      ........+...-.....+++++.. |.++.+-...+.  |..-+++...........-.....+++.+.++.|+.+.. 
T Consensus       109 dg~~~~~l~~~~l~~p~~l~vdp~~-g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~-  186 (263)
T d1npea_         109 DGTQRRVLFDTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA-  186 (263)
T ss_dssp             TSCSCEEEECSSCSSEEEEEEETTT-TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET-
T ss_pred             CCceEEEEecccccCCcEEEEeccc-CcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeC-
Confidence            7554433333334567888887654 334444332233  444455544433333333345678999988888877642 


Q ss_pred             CCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEc
Q 001163          573 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFN  651 (1134)
Q Consensus       573 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  651 (1134)
                        +...|...|+........+.+..  ....+++.  +.+|+... ..+.|...|..+++.+..+.... ......++..
T Consensus       187 --~~~~I~~~~~~g~~~~~v~~~~~--~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~-~~~~~gi~v~  259 (263)
T d1npea_         187 --GTHRAECLNPAQPGRRKVLEGLQ--YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIA  259 (263)
T ss_dssp             --TTTEEEEEETTEEEEEEEEECCC--SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEE
T ss_pred             --CCCEEEEEECCCCCeEEEECCCC--CcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCC-CCCcceEEEe
Confidence              24568888887655544444433  33567664  45666555 77889999999988877664332 2234455544


Q ss_pred             C
Q 001163          652 K  652 (1134)
Q Consensus       652 p  652 (1134)
                      +
T Consensus       260 ~  260 (263)
T d1npea_         260 L  260 (263)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.15  E-value=0.028  Score=63.19  Aligned_cols=271  Identities=11%  Similarity=0.056  Sum_probs=150.9

Q ss_pred             EEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEe------CCCEEEEE
Q 001163          372 LVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY------SKHIVHLY  445 (1134)
Q Consensus       372 la~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s------~dg~v~iw  445 (1134)
                      +..++.||.+.--|.++|+.+-...+  .+..             ....++.--.-.++ .++.+.      .+|.|+-+
T Consensus       118 i~~~~~~g~l~alda~tG~~~w~~~~--~~~~-------------~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~  181 (571)
T d2ad6a1         118 IVKKQANGHLLALDAKTGKINWEVEV--CDPK-------------VGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAF  181 (571)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEEC--CCGG-------------GTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEE
T ss_pred             EEEEeCCCcEEeeehhhhhhhccccc--cccc-------------cccceeecCeEeCC-eEEEeeccccccccCcEEEE
Confidence            45678899999999999986543211  0000             00011100001133 333443      36789999


Q ss_pred             EccCCceeeeeeeeecC----------------------------------CCCE-EEEEEecCCCceEEEEEeC-----
Q 001163          446 TYHGGDELRNHLEIEAH----------------------------------VGSV-NDLAFSYPNKQLSVVTCGE-----  485 (1134)
Q Consensus       446 d~~~~~~~~~~~~l~~h----------------------------------~~~V-~~v~~s~~~~~~~l~s~s~-----  485 (1134)
                      |+.+|+.+-........                                  .+.+ ...++.++...+++.++..     
T Consensus       182 D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~  261 (571)
T d2ad6a1         182 DLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNE  261 (571)
T ss_dssp             ETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCG
T ss_pred             ECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccc
Confidence            99999877643322100                                  1112 2345566666322223211     


Q ss_pred             ---------CCeEEEEECCCCceeEEecCCCcCEEEE-------eccccCCc---cEEEEecCCCcEEEEecCCCCceee
Q 001163          486 ---------DRVIKVWDAVTGTKQYIFEGHESPVYSI-------CPHHKENI---QFIFSTATDGKIKAWLYDNLGSRVD  546 (1134)
Q Consensus       486 ---------d~~i~iwd~~~~~~~~~~~~h~~~v~~~-------~~~~~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~  546 (1134)
                               ...+.-.|+++|+.+..++.+...+...       .+....++   ..++.++.+|.+.+.|..+++.+..
T Consensus       262 ~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~  341 (571)
T d2ad6a1         262 TMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVA  341 (571)
T ss_dssp             GGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeee
Confidence                     3467788999999998776432222111       00011122   3567888999999999887765432


Q ss_pred             ecCC--------------------------------------C-CCeeEEEECcCCCEEEEEecC---------------
Q 001163          547 YDAP--------------------------------------G-HSSTMMAYSADGARLFSCGTN---------------  572 (1134)
Q Consensus       547 ~~~~--------------------------------------~-~~v~~~~~s~~~~~l~~~~~~---------------  572 (1134)
                      ....                                      + ..=...+++|+...++....+               
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~  421 (571)
T d2ad6a1         342 EKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAG  421 (571)
T ss_dssp             EESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTT
T ss_pred             eccCCcccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCC
Confidence            1110                                      0 000125677777766653321               


Q ss_pred             ------------------CCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeE
Q 001163          573 ------------------KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLA  634 (1134)
Q Consensus       573 ------------------~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  634 (1134)
                                        ....+.|.-+|+.+|+.+.+......  ..+-...-.+..+++++.||.++.+|.++|+.+-
T Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~--~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW  499 (571)
T d2ad6a1         422 QFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA--AWGGTLYTKGGLVWYATLDGYLKALDNKDGKELW  499 (571)
T ss_dssp             SCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC--CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccccccceeeccccCCcccCCcccEEEeccCCCceeeEcCCCCC--CCcceeEecCCEEEEECCCCeEEEEECCCCcEEE
Confidence                              01124688899999998876653321  1111122346688889999999999999999998


Q ss_pred             EEecCCCCCCcceEEEcCCCc-EEEEEE
Q 001163          635 SIDADGGLQASPCIRFNKEGI-LLAVST  661 (1134)
Q Consensus       635 ~~~~~~~~~~v~~v~~sp~~~-~l~~~~  661 (1134)
                      ........ .-.-+.|..+|+ ++++..
T Consensus       500 ~~~l~~~~-~a~P~ty~~dGkqYi~v~~  526 (571)
T d2ad6a1         500 NFKMPSGG-IGSPMTYSFKGKQYIGSMY  526 (571)
T ss_dssp             EEECSSCC-CSCCEEEEETTEEEEEEEE
T ss_pred             EEECCCCc-eecceEEEECCEEEEEEEe
Confidence            88764322 223466666775 554443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.13  E-value=0.047  Score=59.07  Aligned_cols=248  Identities=11%  Similarity=0.032  Sum_probs=127.3

Q ss_pred             cCCCCEEEEEEcCCCCEEEEE-eCC----CEEEEEEccCCceeeeeeeeecCCCCEEEEEEecCCCceEEEEEe------
Q 001163          416 DYTASVNRVMWSPDGTLFGVA-YSK----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG------  484 (1134)
Q Consensus       416 ~h~~~V~~l~~spd~~~las~-s~d----g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s------  484 (1134)
                      ++.-.+..+++|||++++|.+ +.+    ..|++.|+.+|+.+...  +..  .....++|++|++. ++.+.-      
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~--i~~--~~~~~~~W~~D~~~-~~Y~~~~~~~~~  196 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV--LER--VKFSCMAWTHDGKG-MFYNAYPQQDGK  196 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE--EEE--ECSCCEEECTTSSE-EEEEECCCCSSC
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccc--ccc--ccccceEEcCCCCE-EEEEEeccccCc
Confidence            344455667899999999865 223    36999999999865422  221  12356899999995 233321      


Q ss_pred             ---------CCCeEEEEECCCCce--eEEecCCCc--CEEEEeccccCCccEEEEec---CCCcEEEE--ecCCCCcee-
Q 001163          485 ---------EDRVIKVWDAVTGTK--QYIFEGHES--PVYSICPHHKENIQFIFSTA---TDGKIKAW--LYDNLGSRV-  545 (1134)
Q Consensus       485 ---------~d~~i~iwd~~~~~~--~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s---~dg~i~vw--d~~~~~~~~-  545 (1134)
                               ....|..|.+.+...  ...+.....  .+..+..  +.++.+++...   .+....+|  ++....... 
T Consensus       197 ~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~--s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~  274 (430)
T d1qfma1         197 SDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL--SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGIT  274 (430)
T ss_dssp             CSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC
T ss_pred             ccccccccCCcceEEEEECCCCccccccccccccCCceEEeeec--cCCcceeeEEeeccCCccEEEEEeeCCCcccccc
Confidence                     122577777766532  233333332  3444443  45556665322   23344444  433221111 


Q ss_pred             -------eecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeCCCCee---EEEecCCCCCceEEEEEcCCCCEEEE
Q 001163          546 -------DYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV---KRTYHGLGKRSVGVVQFDTTKNRFLA  615 (1134)
Q Consensus       546 -------~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~  615 (1134)
                             .......... .... +|..+...+.....+..|...++.....   ...+..+.. .+..-.+...+.+|+.
T Consensus       275 ~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~-~~~~~~~~~~~~~lvl  351 (430)
T d1qfma1         275 GILKWVKLIDNFEGEYD-YVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEK-DVLEWVACVRSNFLVL  351 (430)
T ss_dssp             SSCCCEEEECSSSSCEE-EEEE-ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSS-CEEEEEEEETTTEEEE
T ss_pred             cccceeEeecccccceE-EEec-CCceeecccCcccccceeEEecCCCCccccceEEecccCc-ceeeeEEEEECCEEEE
Confidence                   1111111222 2222 3344444333333456677777765432   222333332 3443344444556665


Q ss_pred             Ee-CCC--eEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEEC----CCcEEEEEccCCc
Q 001163          616 AG-DEF--MIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTN----DNGIKILANADGI  675 (1134)
Q Consensus       616 ~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~----dg~i~iw~~~~~~  675 (1134)
                      .. .++  .|+++++.+++........  ...+..+...++...+...-.    -.++.-+|+.++.
T Consensus       352 ~~~~~~~~~l~v~~~~~~~~~~~~~~~--~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         352 CYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             EEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEcCCEeEEEEEECCCCcEEEecCCC--CceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            54 554  5889999888766554332  334444444455544333222    3678888888774

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.00  E-value=0.066  Score=55.35  Aligned_cols=236  Identities=13%  Similarity=0.076  Sum_probs=144.6

Q ss_pred             EEEEeCCCEEEEEEccCCceeeeeeeeecC------------------------------------CCCE--EEEEEec-
Q 001163          433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAH------------------------------------VGSV--NDLAFSY-  473 (1134)
Q Consensus       433 las~s~dg~v~iwd~~~~~~~~~~~~l~~h------------------------------------~~~V--~~v~~s~-  473 (1134)
                      +.||+..|.|+|+-+.+++.++.+..|..-                                    .+..  -.+.|.. 
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            446788999999999888877643322100                                    0111  1344443 


Q ss_pred             --CCCceEEEEEeCCCeEEEEECCCCceeEEecC-CCcCEEEEeccccCCccEEEEecCCC------------------c
Q 001163          474 --PNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG-HESPVYSICPHHKENIQFIFSTATDG------------------K  532 (1134)
Q Consensus       474 --~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~dg------------------~  532 (1134)
                        ||+. +++.-..+..|.+-|+++.++.+...- ....+..++....++..+++..+.+.                  .
T Consensus        96 tyDGry-lFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~  174 (459)
T d1fwxa2          96 KYDGRF-LFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  174 (459)
T ss_dssp             EEEEEE-EEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEE
T ss_pred             ccceeE-EEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceE
Confidence              6775 566666889999999999998664432 34456767666666667888776532                  2


Q ss_pred             EEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCC-----------CCeEEEEEeC-----------------
Q 001163          533 IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKE-----------GESYLVEWNE-----------------  584 (1134)
Q Consensus       533 i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~-----------~~~~i~~wd~-----------------  584 (1134)
                      +.++|.++.+........ .....+.++++|+++++.+.+.+           ....+.+++.                 
T Consensus       175 ~t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eing  253 (459)
T d1fwxa2         175 FTAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  253 (459)
T ss_dssp             EEEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             EEEEecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCC
Confidence            566777766655554432 34567899999999998764321           1223344443                 


Q ss_pred             ------CCC---eeEEEecCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCcee----------EEEecCCCCCC
Q 001163          585 ------SEG---AVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLL----------ASIDADGGLQA  644 (1134)
Q Consensus       585 ------~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~----------~~~~~~~~~~~  644 (1134)
                            ...   ..++.+....  ....+.++|||+++++++ -+.++.|+|+++-...          ..-+..-+. .
T Consensus       254 V~VVD~~~~~~~~v~~yIPVpK--sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elgl-g  330 (459)
T d1fwxa2         254 VKVVDGRKEASSLFTRYIPIAN--NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL-G  330 (459)
T ss_dssp             EEEEECSGG--CSSEEEEEEES--SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCS-C
T ss_pred             ceeecccccCCcceeEEEecCC--CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCc-C
Confidence                  211   1111111111  234588999999999988 7899999998642111          001111111 2


Q ss_pred             cceEEEcCCCcEEEEEECCCcEEEEEccC
Q 001163          645 SPCIRFNKEGILLAVSTNDNGIKILANAD  673 (1134)
Q Consensus       645 v~~v~~sp~~~~l~~~~~dg~i~iw~~~~  673 (1134)
                      -...+|+..|.-..+---|..|.-|++..
T Consensus       331 PLht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         331 PLHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             EEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             ccccccCCCceEEEEeeccceEEEEecch
Confidence            24667888886666666799999999853

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.96  E-value=0.2  Score=48.82  Aligned_cols=253  Identities=9%  Similarity=0.084  Sum_probs=144.2

Q ss_pred             CeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCc
Q 001163          576 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI  655 (1134)
Q Consensus       576 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~  655 (1134)
                      ...+.+.|+..+..+.+-.-.    ..+.-.+|..+.++.-+ ..++.++|+++.+.+......   ..|.--.|-.+. 
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi~----AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~---e~VvfWkWis~~-  114 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWISLN-  114 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEECC----CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS---SCCCEEEESSSS-
T ss_pred             CceEEEEECCCCCcceecccc----hhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcC---CCcEEEEecCCC-
Confidence            456889999876533222221    22455789888877766 568999999999999988764   345556665443 


Q ss_pred             EEEEEECCCcEEEEEccCCceeEEEeccCcccccccchhhhhcccccccccccccccccCcCCCCcccccccCCCCCCcc
Q 001163          656 LLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRN  735 (1134)
Q Consensus       656 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  735 (1134)
                      .|+..+ +..|+=|+++......+.+..|..-                                                
T Consensus       115 ~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L------------------------------------------------  145 (327)
T d1utca2         115 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL------------------------------------------------  145 (327)
T ss_dssp             EEEEEC-SSEEEEEESSSSCCCEEEEECCGGG------------------------------------------------
T ss_pred             EEEEEc-CCceEEEcccCCCCchhhhhhcccc------------------------------------------------
Confidence            454444 3478999985543333333322110                                                


Q ss_pred             CcccccccccccccccceeeecccCCccceeccccCCccccccEEEEEEecCCceeeeecc-------CCeEEeeecCCC
Q 001163          736 FTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALAS-------NAVHKLWKWPRN  808 (1134)
Q Consensus       736 ~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~-------dg~i~vw~~~~~  808 (1134)
                                                             ....|-.-..+++.++++..+-       .|.+.+|..+..
T Consensus       146 ---------------------------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~  186 (327)
T d1utca2         146 ---------------------------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK  186 (327)
T ss_dssp             ---------------------------------------TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT
T ss_pred             ---------------------------------------cCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC
Confidence                                                   1234555555666666554332       256666655432


Q ss_pred             CCCcccccccCCCCcccCCCCCcccccCCCCCCCCCCeeEEEEcCCC---CeEEEee----CCeEEEEEccCCe------
Q 001163          809 ERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKND---SYVMSAS----GGKISLFNMMTFK------  875 (1134)
Q Consensus       809 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg---~~la~~s----dg~i~lwd~~~~~------  875 (1134)
                                            .-..  +.|  |...-..+.+..+.   ++++.+.    .+++.|.++....      
T Consensus       187 ----------------------~sQ~--ieG--haa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f  240 (327)
T d1utca2         187 ----------------------VSQP--IEG--HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF  240 (327)
T ss_dssp             ----------------------EEEE--ECC--SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCC
T ss_pred             ----------------------cCcc--ccc--eeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCC
Confidence                                  1111  111  22211111111110   1222222    3678888885421      


Q ss_pred             --EEEEec-C---CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCC
Q 001163          876 --TMTTFM-P---PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADS  949 (1134)
Q Consensus       876 --~~~~~~-~---~~~~v~~l~~sp~~~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg  949 (1134)
                        ....+. .   ...-..++.+|+ .-.++..-+.-|.|++||+.++.++..-+--.+.|...+-..+..-++....+|
T Consensus       241 ~kk~vdi~fppea~~DFPvamqvs~-kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~G  319 (327)
T d1utca2         241 PKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKG  319 (327)
T ss_dssp             CCEEEECCCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTS
T ss_pred             cceeEEEECCccccCCcEEEEEeec-cCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCC
Confidence              111111 1   123467888888 666888899999999999999999877665566666555454444555555666


Q ss_pred             cEE
Q 001163          950 QLC  952 (1134)
Q Consensus       950 ~i~  952 (1134)
                      .|.
T Consensus       320 qVl  322 (327)
T d1utca2         320 QVL  322 (327)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            554

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.92  E-value=0.22  Score=48.56  Aligned_cols=256  Identities=9%  Similarity=0.095  Sum_probs=147.9

Q ss_pred             CcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEEccCCceeeeeee
Q 001163          379 GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLE  458 (1134)
Q Consensus       379 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd~~~~~~~~~~~~  458 (1134)
                      ..|.|-|+.++....++.+                      .--+.-.+|..+.||.=+ ..++.|+|+++.+.++.   
T Consensus        45 ~~VvIidl~n~~~~~Rrpi----------------------~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks---   98 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRPI----------------------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKA---   98 (327)
T ss_dssp             EEEEEEETTSTTSCEEEEC----------------------CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEE---
T ss_pred             ceEEEEECCCCCcceeccc----------------------chhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhce---
Confidence            3688888877654433222                      222345678888887766 45799999999886663   


Q ss_pred             eecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCC-ceeEEecCCCc--CEEEEeccccCCccEEEEec---C---
Q 001163          459 IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHES--PVYSICPHHKENIQFIFSTA---T---  529 (1134)
Q Consensus       459 l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s---~---  529 (1134)
                      .. ...+|..-.|-.+.. +.|+|   +..|+-|+++.. .+.+.|..|..  ...-+.+..+++.++++..+   .   
T Consensus        99 ~~-~~e~VvfWkWis~~~-L~lVT---~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~  173 (327)
T d1utca2          99 HT-MTDDVTFWKWISLNT-VALVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNR  173 (327)
T ss_dssp             EE-CSSCCCEEEESSSSE-EEEEC---SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTE
T ss_pred             EE-cCCCcEEEEecCCCE-EEEEc---CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCc
Confidence            22 334677778876554 23333   358999998543 46666665542  12222333345556554332   2   


Q ss_pred             -CCcEEEEecCCCCceeeecCCCCCeeEEEECc--CCCEEEEEecCCCCCeEEEEEeCCCCe--------eEEEecC---
Q 001163          530 -DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSA--DGARLFSCGTNKEGESYLVEWNESEGA--------VKRTYHG---  595 (1134)
Q Consensus       530 -dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~wd~~~~~--------~~~~~~~---  595 (1134)
                       .|.+.+|..+. +....+++|......+.+..  +...+++....+.....+++.++....        ....+..   
T Consensus       174 i~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppe  252 (327)
T d1utca2         174 VVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE  252 (327)
T ss_dssp             EEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTT
T ss_pred             eeEEEEEEEecc-CcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCcc
Confidence             36678887763 33334444433332332221  111233222222334678888876421        1111111   


Q ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcCCCcEEEEEECCCcEEE
Q 001163          596 LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKI  668 (1134)
Q Consensus       596 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~i  668 (1134)
                      ..+....++..++....++..+.-|.|++||++++.++..-...  ...|...+-+.+..-+++...+|.|..
T Consensus       253 a~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs--~~~iF~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         253 AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS--GETIFVTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             CTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred             ccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecC--CCceEEeccCCCCceEEEECCCCeEEE
Confidence            11224556888888899999999999999999999999877654  345554454555445555567776654

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.52  E-value=0.00082  Score=50.20  Aligned_cols=56  Identities=14%  Similarity=0.231  Sum_probs=47.9

Q ss_pred             hHHHHHHHHHHhhhcCHHHHHHHHHHhcCCCcc--HHHHHHHhhcccHHHHHHHHccc
Q 001163            5 SRELVFLILQFLDEEKFKETVHKLEQDSGFFFN--MRYFEDMVTNGEWDEVEKYLSGF   60 (1134)
Q Consensus         5 ~~e~~~li~q~L~~~g~~~s~~~l~~Esg~~~~--~~~~~~~i~~g~w~~~~~~l~~~   60 (1134)
                      ++|+.+-|++||..+||.+++.+|.+|+.+.++  ...-...+++-.|..++.+-.++
T Consensus         7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~~~~~~ky~glLEKKWtSViRLQkKI   64 (76)
T d1uuja_           7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKV   64 (76)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCCChhhhhhhcCcchhHHHHHHHHHHHH
Confidence            579999999999999999999999999998875  55566778889998888866554

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.43  E-value=1.5  Score=44.32  Aligned_cols=200  Identities=10%  Similarity=0.116  Sum_probs=112.1

Q ss_pred             CCCCeEEEee-CCeEEEEEccCCeEEEEecCCCCCeEEEEEcC-----CCCcEEEEEe--CCC--cEEEEEccc-ceEEE
Q 001163          853 KNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHP-----QDNNIIAIGM--EDS--SIQIYNVRV-DEVKT  921 (1134)
Q Consensus       853 ~dg~~la~~s-dg~i~lwd~~~~~~~~~~~~~~~~v~~l~~sp-----~~~~~la~g~--~dg--~i~iwd~~~-~~~~~  921 (1134)
                      |+..+++... .+-|++||+. |+.+..+.  .+.++.+..-.     ....-+++++  .++  +|.+|.+.. ...+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            3455666555 5569999994 77777764  45666665442     0222344444  223  688888753 22333


Q ss_pred             eccCc-------cCceEEEEE--eeC-CC-EEEEEeCCCcEEEEECCCCccc--cceeeeecCCCCCCCCCceEEEEcCC
Q 001163          922 KLKGH-------QKRITGLAF--SNT-LN-VLVSSGADSQLCVWSTDGWEKQ--ASKFLTIPNGRTASALADTRVQFHLD  988 (1134)
Q Consensus       922 ~l~~h-------~~~V~~l~~--s~d-~~-~l~s~s~Dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~l~fs~d  988 (1134)
                      .+...       ...+..+|+  ++. |. +++....+|.+..|.+...+..  ....+..+...    ..+..|.+.++
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~----~q~EGCVvDde  190 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN----SQTEGMAADDE  190 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS----SCEEEEEEETT
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC----CccceEEEeCC
Confidence            33321       124667777  544 44 5666778899998877432211  11222222111    35889999999


Q ss_pred             CCEEEEEee-ceEEEEeCCC--cc---cceeeccCCCccCEEEEEEc--cCCC-E-EEEEecCCcEEEeecCCC-cceee
Q 001163          989 QTHLLAVHE-TQIAIYEAPK--LE---CLKQFVPREASGPITHATYS--CDSQ-S-IYVAFEEGSVGVLTASTL-RLRCR 1057 (1134)
Q Consensus       989 g~~l~~~~d-~~i~iwd~~~--~~---~~~~~~~~~h~~~v~~~~~s--~dg~-~-l~s~s~Dg~i~vwd~~~~-~~~~~ 1057 (1134)
                      ...|.++.+ ..|..++.+.  +.   .+...........+-.+++-  .++. | |+|.-.|++..|||..+. +.+..
T Consensus       191 ~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~  270 (353)
T d1h6la_         191 YGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVAD  270 (353)
T ss_dssp             TTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred             CCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccce
Confidence            999999844 4455555431  11   11111111236677777753  3333 5 455556789999998774 55544


Q ss_pred             cC
Q 001163         1058 IN 1059 (1134)
Q Consensus      1058 ~~ 1059 (1134)
                      +.
T Consensus       271 F~  272 (353)
T d1h6la_         271 FQ  272 (353)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.64  E-value=2  Score=43.50  Aligned_cols=169  Identities=8%  Similarity=0.012  Sum_probs=92.0

Q ss_pred             CCeEEEEECCCCceeE-E--ecCC-----CcCEEEEeccccCCcc-EEEEe---cCCCcEEEEecCCCCceeee----cC
Q 001163          486 DRVIKVWDAVTGTKQY-I--FEGH-----ESPVYSICPHHKENIQ-FIFST---ATDGKIKAWLYDNLGSRVDY----DA  549 (1134)
Q Consensus       486 d~~i~iwd~~~~~~~~-~--~~~h-----~~~v~~~~~~~~~~~~-~l~s~---s~dg~i~vwd~~~~~~~~~~----~~  549 (1134)
                      .|.|.++|+.+.+... .  +.+.     .-.-..+.+....+|. +|++.   ....+|.+|++.........    ..
T Consensus        67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~  146 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH  146 (340)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred             CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence            4888999987654321 1  1111     1123445443444444 34443   34567888888755543322    11


Q ss_pred             -CCCCeeEEEECcCCCEEEEEecC-------------CCCCeEEEEEeCCCCeeEEEecCCCCCceEEEEEcCCCCEEEE
Q 001163          550 -PGHSSTMMAYSADGARLFSCGTN-------------KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLA  615 (1134)
Q Consensus       550 -~~~~v~~~~~s~~~~~l~~~~~~-------------~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  615 (1134)
                       ......++++..++..+++--..             +...+.+.-||....+.+  ..+.  ...+.++++|++++|+.
T Consensus       147 ~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~--~~~l--~~pNGI~~s~d~~~lyV  222 (340)
T d1v04a_         147 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVV--AEGF--DFANGINISPDGKYVYI  222 (340)
T ss_dssp             TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEE--EEEE--SSEEEEEECTTSSEEEE
T ss_pred             ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEE--cCCC--CccceeEECCCCCEEEE
Confidence             12356788998999888874210             112344555665443322  2221  25678999999988877


Q ss_pred             Ee-CCCeEEEEEcCCCceeEEEecCCCCCCcceEEEcC-CCcEEE
Q 001163          616 AG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK-EGILLA  658 (1134)
Q Consensus       616 ~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~  658 (1134)
                      +. ..+.|++|++.....+.......-....-.+.+.+ +|.+.+
T Consensus       223 a~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwv  267 (340)
T d1v04a_         223 AELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWV  267 (340)
T ss_dssp             EEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEE
T ss_pred             EeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEE
Confidence            76 77889999987544332221111122344667765 344443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.24  E-value=1  Score=45.82  Aligned_cols=183  Identities=9%  Similarity=0.065  Sum_probs=102.4

Q ss_pred             eeEEEEcCCCCeEEEee-------------CCeEEEEEccCCeEEE-E--ecCCC-----CCeEEEEE--cCCCCc-EEE
Q 001163          846 VPCFALSKNDSYVMSAS-------------GGKISLFNMMTFKTMT-T--FMPPP-----PAATFLAF--HPQDNN-IIA  901 (1134)
Q Consensus       846 v~~v~~s~dg~~la~~s-------------dg~i~lwd~~~~~~~~-~--~~~~~-----~~v~~l~~--sp~~~~-~la  901 (1134)
                      ...++..|||..+++++             .|.|.++|+.+..... .  +.+..     -....+.+  .+ +++ +|+
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~-dg~~~L~  115 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDD-DNTVYLL  115 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECT-TCCEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcC-CCcEEEE
Confidence            34688889998776653             2789999987643222 1  11111     12344443  33 343 455


Q ss_pred             EEe---CCCcEEEEEcccc--eE--EEeccC-ccCceEEEEEeeCCCEEEEEeC---------------CCcEEEEECCC
Q 001163          902 IGM---EDSSIQIYNVRVD--EV--KTKLKG-HQKRITGLAFSNTLNVLVSSGA---------------DSQLCVWSTDG  958 (1134)
Q Consensus       902 ~g~---~dg~i~iwd~~~~--~~--~~~l~~-h~~~V~~l~~s~d~~~l~s~s~---------------Dg~i~iwd~~~  958 (1134)
                      +..   ...+|.+|++...  +.  +.++.. .....+++++..++.+++|-..               -.+..+|..+.
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~  195 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  195 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred             EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence            442   3457888888643  22  122222 2244789999999999988421               12344555444


Q ss_pred             CccccceeeeecCCCCCCCCCceEEEEcCCCCEEEEE--eeceEEEEeCCCcccceeeccCCCccCEEEEEEcc-CCCEE
Q 001163          959 WEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV--HETQIAIYEAPKLECLKQFVPREASGPITHATYSC-DSQSI 1035 (1134)
Q Consensus       959 ~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l 1035 (1134)
                      ++.   ..+.  .+.    .....++++||+++|+++  ..++|++|++.....+.......-....-.+.+.+ +|.+.
T Consensus       196 ~~~---~~~~--~~l----~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lw  266 (340)
T d1v04a_         196 NDV---RVVA--EGF----DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLW  266 (340)
T ss_dssp             SCE---EEEE--EEE----SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEE
T ss_pred             Cce---EEEc--CCC----CccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEE
Confidence            331   1111  111    236889999999999885  66889999987543322221101134566788865 45554


Q ss_pred             EEE
Q 001163         1036 YVA 1038 (1134)
Q Consensus      1036 ~s~ 1038 (1134)
                      +.+
T Consensus       267 va~  269 (340)
T d1v04a_         267 VGC  269 (340)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.53  E-value=5.2  Score=42.20  Aligned_cols=102  Identities=21%  Similarity=0.213  Sum_probs=61.0

Q ss_pred             CCeeEEEEcCCCCeEEEee-CCeEEEEEccCCeEEEE--ec------CCCCCeEEEEEcCC--CCcEEEEE-e------C
Q 001163          844 DAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTT--FM------PPPPAATFLAFHPQ--DNNIIAIG-M------E  905 (1134)
Q Consensus       844 ~~v~~v~~s~dg~~la~~s-dg~i~lwd~~~~~~~~~--~~------~~~~~v~~l~~sp~--~~~~la~g-~------~  905 (1134)
                      ...++|+|.|||+++++-- .|+|++++..+++....  +.      .-.+....++|+|+  ...+|... +      .
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~  106 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCc
Confidence            4567999999999999886 79999999877654332  21      11245788999983  12333332 1      1


Q ss_pred             C----Cc--EEEEEcccc-------eEE-Eec---cCccCceEEEEEeeCCCEEEEEeC
Q 001163          906 D----SS--IQIYNVRVD-------EVK-TKL---KGHQKRITGLAFSNTLNVLVSSGA  947 (1134)
Q Consensus       906 d----g~--i~iwd~~~~-------~~~-~~l---~~h~~~V~~l~~s~d~~~l~s~s~  947 (1134)
                      +    ..  +..+.....       +.+ ..+   ..|.  ...|+|.|||.+.++.+.
T Consensus       107 ~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQ--SGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCC--EEEEEECTTSCEEEEECC
T ss_pred             ccccccceEEEeeecccccccccceEEEeeccccccccc--ccceeEcCCCCEEEEecC
Confidence            1    12  223332221       111 111   1244  468999999998888774

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=93.48  E-value=4.4  Score=40.76  Aligned_cols=196  Identities=12%  Similarity=0.130  Sum_probs=110.4

Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEecCCCcCEEEEeccc----cCCccEEEEec-C-C--CcEEEEecCCCCcee-eecC
Q 001163          479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHH----KENIQFIFSTA-T-D--GKIKAWLYDNLGSRV-DYDA  549 (1134)
Q Consensus       479 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~----~~~~~~l~s~s-~-d--g~i~vwd~~~~~~~~-~~~~  549 (1134)
                      +++.....+-|.++|+ .|+.+..+.  .+.++.+..-.    ......++.++ . +  .+|.+|.+....... .+..
T Consensus        42 lI~gTdK~~Gl~vYdL-~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~  118 (353)
T d1h6la_          42 KLITTNKKSGLAVYSL-EGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITD  118 (353)
T ss_dssp             EEEEEETTSCCEEEET-TCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSC
T ss_pred             EEEEEcCcCCEEEEcC-CCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccccc
Confidence            6777777778999997 588887765  34555554321    12222344444 2 2  358888776433222 1211


Q ss_pred             C-------CCCeeEEEE--CcC-CCEEEEEecCCCCCeEEEEEeC---CCC----eeEEEecCCCCCceEEEEEcCCCCE
Q 001163          550 P-------GHSSTMMAY--SAD-GARLFSCGTNKEGESYLVEWNE---SEG----AVKRTYHGLGKRSVGVVQFDTTKNR  612 (1134)
Q Consensus       550 ~-------~~~v~~~~~--s~~-~~~l~~~~~~~~~~~~i~~wd~---~~~----~~~~~~~~~~~~~v~~~~~~~~~~~  612 (1134)
                      .       ...++.+|+  ++. |...+... +++  +.+..|.+   ..+    +.++.+....  .+..|.+......
T Consensus       119 ~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~-~k~--G~v~q~~l~~~~~g~v~~~lvr~f~~~~--q~EGCVvDde~~~  193 (353)
T d1h6la_         119 PNRPIASAIDEVYGFSLYHSQKTGKYYAMVT-GKE--GEFEQYELNADKNGYISGKKVRAFKMNS--QTEGMAADDEYGS  193 (353)
T ss_dssp             SSSCEECSSSSCCCEEEEECTTTCCEEEEEE-CSS--SEEEEEEEEECTTSSEEEEEEEEEECSS--CEEEEEEETTTTE
T ss_pred             cccccccccCcceEEEEEecCCCCeEEEEEE-cCC--ceEEEEEEEcCCCCceeeEeeeccCCCC--ccceEEEeCCCCc
Confidence            1       124666776  665 44444443 233  34555543   333    4555665443  6788999999999


Q ss_pred             EEEEeCCCeEEEEEcCC--Cc---eeEEEecCCCCCCcceEEEc--C--CCcEEEEEECCCcEEEEEccCCceeEEEec
Q 001163          613 FLAAGDEFMIKFWDMDN--VN---LLASIDADGGLQASPCIRFN--K--EGILLAVSTNDNGIKILANADGIRLLRTVE  682 (1134)
Q Consensus       613 l~~~~~dg~i~iwd~~~--~~---~~~~~~~~~~~~~v~~v~~s--p--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  682 (1134)
                      |+.+-++..|+.++.+.  ..   .+.......-...+-.++.-  .  +|-+|++.-.+++..+|+.......+..+.
T Consensus       194 LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~  272 (353)
T d1h6la_         194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQ  272 (353)
T ss_dssp             EEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEE
Confidence            99999888777776542  22   22222221123345556543  2  334555555678999999876545554443

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=92.70  E-value=3.4  Score=37.25  Aligned_cols=221  Identities=15%  Similarity=0.109  Sum_probs=118.3

Q ss_pred             CCCeEEEEEeCCCcEEEEecCCccceeeeceeeeeccccCccccccccccCCCCEEEEEEcCCCCEEEEEeCCCEEEEEE
Q 001163          367 VQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYT  446 (1134)
Q Consensus       367 ~g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~dg~v~iwd  446 (1134)
                      ++..+++++...|.|.++-+..++.+.-                      ...+|....- |..      +-|..+.+-|
T Consensus        24 ~~d~ll~~~~seG~vni~~l~g~~~vkL----------------------tkePI~~~~~-Pk~------~ldfi~f~RD   74 (313)
T d2hu7a1          24 DGDKLLVVGFSEGSVNAYLYDGGETVKL----------------------NREPINSVLD-PHY------GVGRVILVRD   74 (313)
T ss_dssp             TTTEEEEEEEETTEEEEEEESSSSCEEC----------------------CSSCCSEECE-ECT------TBSEEEEEEE
T ss_pred             cCCcEEEEEeccceEEEEEEeCCEEEEE----------------------ecccccCcCC-Ccc------CcceEEEEee
Confidence            3445888898999999999988876542                      1112211110 110      0122233344


Q ss_pred             ccCCceeeeee-----------eeecCCCCEEEEEEecCCCceEEEEEeCCCeEEEEECCCCceeE--EecCCCcCEEEE
Q 001163          447 YHGGDELRNHL-----------EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY--IFEGHESPVYSI  513 (1134)
Q Consensus       447 ~~~~~~~~~~~-----------~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~--~~~~h~~~v~~~  513 (1134)
                      +..|+..+...           .+... .+|.-+....|++. ..++|+......+|-++.|+...  .+.+. +-|+.+
T Consensus        75 V~kGkE~Hai~~~Nlk~~GEE~~i~sp-k~vRI~S~~yddk~-vvF~Gased~~~LYviegGklrkL~~vPpF-sFVtDI  151 (313)
T d2hu7a1          75 VSKGAEQHALFKVNTSRPGEEQRLEAV-KPMRILSGVDTGEA-VVFTGATEDRVALYALDGGGLRELARLPGF-GFVSDI  151 (313)
T ss_dssp             CSTTSCCEEEEEEETTSTTCEEECTTS-CSBEEEEEEECSSC-EEEEEECSSCEEEEEEETTEEEEEEEESSC-EEEEEE
T ss_pred             hhcCcceeeEEEEccCCCCeeeEecCC-ceEEEEEeeecCce-EEEecccCCceEEEEEeCCceeeeccCCCc-ceEEec
Confidence            44444332211           12222 22333444445665 57778777778888887776533  33321 223333


Q ss_pred             --------eccccCCccEEEEecC-CCcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCCCeEEEEEeC
Q 001163          514 --------CPHHKENIQFIFSTAT-DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE  584 (1134)
Q Consensus       514 --------~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~  584 (1134)
                              .+.. ++..-++++.. .|.+++++           ...+.++.....++.+. ++.... -++....-+|+
T Consensus       152 ~~d~I~G~g~~~-g~~~sfF~adl~SG~lri~t-----------pkeGS~~~ay~~~gnKV-~sdyEt-~gEsywit~D~  217 (313)
T d2hu7a1         152 RGDLIAGLGFFG-GGRVSLFTSNLSSGGLRVFD-----------SGEGSFSSASISPGMKV-TAGLET-AREARLVTVDP  217 (313)
T ss_dssp             ETTEEEEEEEEE-TTEEEEEEEETTTEEEEEEC-----------CSSEEEEEEEECTTSCE-EEEEEE-SSCEEEEEECT
T ss_pred             cCCeEEEEeeec-CCcceEEEEecccCCEEEec-----------CCCCcccceeEccCcee-eeccCC-CCceEEEEEec
Confidence                    2211 11122333333 45555553           34556777777777766 443332 33444556799


Q ss_pred             CCCeeEEE-ecC-----CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEE
Q 001163          585 SEGAVKRT-YHG-----LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLAS  635 (1134)
Q Consensus       585 ~~~~~~~~-~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  635 (1134)
                      ++++..+. +..     .....+..+-+.|+++.++.+-.||.=.++.  +|+.+..
T Consensus       218 ~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~in~  272 (313)
T d2hu7a1         218 RDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI--DGERVEA  272 (313)
T ss_dssp             TTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE--TTEEECC
T ss_pred             ccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchheee--cceEecC
Confidence            88765442 221     1222466677999999989999999988886  4555543

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.08  E-value=2.2  Score=41.95  Aligned_cols=110  Identities=8%  Similarity=-0.016  Sum_probs=51.6

Q ss_pred             cEEEEecCC-----CcEEEEecCCCCceeeecCCCCCeeEEEECcCCCEEEEEecCCCC-CeEEEEEeCCCCeeEEEecC
Q 001163          522 QFIFSTATD-----GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG-ESYLVEWNESEGAVKRTYHG  595 (1134)
Q Consensus       522 ~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~i~~wd~~~~~~~~~~~~  595 (1134)
                      .+++.|+.+     ..+..||.........-..............+++.++.++.+... ......+|..+.+....-..
T Consensus       150 ~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (288)
T d1zgka1         150 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM  229 (288)
T ss_dssp             EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC
T ss_pred             cceEecCcccccccceEEEeeccccccccccccccccccccccceeeeEEEecCccccccccceeeeeecceeeecccCc
Confidence            455555543     346777765433222111111111111222345555555543221 23467788877665443222


Q ss_pred             CCCCceEEEEEcCCCCEEEEEeCCC-----eEEEEEcCCCce
Q 001163          596 LGKRSVGVVQFDTTKNRFLAAGDEF-----MIKFWDMDNVNL  632 (1134)
Q Consensus       596 ~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~  632 (1134)
                      .....-.+++. .+++.++.|+.++     .|.+||+.+++.
T Consensus       230 p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W  270 (288)
T d1zgka1         230 KHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTW  270 (288)
T ss_dssp             SSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             cCcccceEEEE-ECCEEEEEecCCCCeecceEEEEECCCCEE
Confidence            22111122332 3567777776443     377888887653

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.76  E-value=3.5  Score=42.11  Aligned_cols=181  Identities=13%  Similarity=0.079  Sum_probs=105.1

Q ss_pred             CCeeEEEEcCCCCeEEEeeCCeEEEEEccC-----------CeEEEEecCCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 001163          844 DAVPCFALSKNDSYVMSASGGKISLFNMMT-----------FKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIY  912 (1134)
Q Consensus       844 ~~v~~v~~s~dg~~la~~sdg~i~lwd~~~-----------~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~dg~i~iw  912 (1134)
                      ....-+++++...++++|+...+.|..+..           .......  .-..|..++|+. +  .|++. .++.+..+
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~-d--~l~v~-~~~~l~~~  110 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHG-D--QVLVS-TRNALYSL  110 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEET-T--EEEEE-ESSEEEEE
T ss_pred             cccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeC-C--EEEEE-eCCCEEEE
Confidence            445678898888888888866778877521           1111111  123689999985 3  35544 34567777


Q ss_pred             EcccceEEEeccCccCceEEEEEeeCCCEEEEEeCCCcEEEEECCCCcccccee-eeecCCCCCCCCCceEEEEcCCCCE
Q 001163          913 NVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKF-LTIPNGRTASALADTRVQFHLDQTH  991 (1134)
Q Consensus       913 d~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~v~~l~fs~dg~~  991 (1134)
                      +..+-........-..++..+.++|.  .++....++.+.++++..++...... .....    ....+.+++|++.|+.
T Consensus       111 ~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~----~~~~~~~v~ws~kgkq  184 (381)
T d1xipa_         111 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFD----VTNSQLAVLLKDRSFQ  184 (381)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEE----ECSSEEEEEETTSCEE
T ss_pred             EeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEE----ecCCceEEEEeCCcEE
Confidence            77653333333333456777777664  56667778999999998875322110 00000    0134788889999988


Q ss_pred             EEEEeeceEEEE-eCCCcccceeeccCCCccCEEEEEEccCCCEEEEE
Q 001163          992 LLAVHETQIAIY-EAPKLECLKQFVPREASGPITHATYSCDSQSIYVA 1038 (1134)
Q Consensus       992 l~~~~d~~i~iw-d~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~ 1038 (1134)
                      ++++.++...+- ++.....+...  ......|.+|.|-.+..++++-
T Consensus       185 ~v~~~g~~~q~k~~i~~~~~~~~p--~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         185 SFAWRNGEMEKQFEFSLPSELEEL--PVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEEEETTEEEEEEEECCCHHHHTS--CTTTSEEEEEEESSSSEEEEEE
T ss_pred             EEEeCCCceeeccCCCCccccCCC--cCCCcceeEEEEecCceEEEEE
Confidence            887643333221 22211111111  1234578899998777776654

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.10  E-value=2.9  Score=40.99  Aligned_cols=225  Identities=11%  Similarity=-0.002  Sum_probs=103.1

Q ss_pred             CeEEEEEccCCeE--EEEecCCCCCeEEEEEcCCCCcEEEEEeCC---------CcEEEEEcccceEEEeccCccCceEE
Q 001163          864 GKISLFNMMTFKT--MTTFMPPPPAATFLAFHPQDNNIIAIGMED---------SSIQIYNVRVDEVKTKLKGHQKRITG  932 (1134)
Q Consensus       864 g~i~lwd~~~~~~--~~~~~~~~~~v~~l~~sp~~~~~la~g~~d---------g~i~iwd~~~~~~~~~l~~h~~~V~~  932 (1134)
                      ..+.+||+.+.+-  +..+......-..+. .  ++++++.|+..         ..+.+||..+.+....-......-..
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~   95 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVPRSGLAGCV-V--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI   95 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEE-E--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC
T ss_pred             ceEEEEECCCCeEEECCCCCCccceeEEEE-E--CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecce
Confidence            3478899887542  222222222222222 2  56677776531         36778888765433221111111111


Q ss_pred             EEEeeCCCEEEEEeCCCc-----EEEEECCCCccccceeeeecCCCCCCCCCceEEEEcCCCCEEEE-Ee-----eceEE
Q 001163          933 LAFSNTLNVLVSSGADSQ-----LCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VH-----ETQIA 1001 (1134)
Q Consensus       933 l~~s~d~~~l~s~s~Dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~-----d~~i~ 1001 (1134)
                      .+...+++.++.++.++.     ...++..+..-     ......... ... ...... ++..++. +.     ...+.
T Consensus        96 ~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-r~~-~~~~~~-~~~~~~~GG~~~~~~~~~~~  167 (288)
T d1zgka1          96 GVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEW-----HLVAPMLTR-RIG-VGVAVL-NRLLYAVGGFDGTNRLNSAE  167 (288)
T ss_dssp             EEEEETTEEEEECCEETTEECCCEEEEETTTTEE-----EECCCCSSC-CBS-CEEEEE-TTEEEEECCBCSSCBCCCEE
T ss_pred             eccccceeeEEecceecccccceeeeeccccCcc-----ccccccccc-ccc-ceeeee-eecceEecCcccccccceEE
Confidence            122336666666655443     44466655331     111111110 011 222222 3344444 22     24578


Q ss_pred             EEeCCCcccceeeccCCCccCEEEEEEccCCCEEEEEecC-----CcEEEeecCCCcceeecCCCcccCCCCCCCceeEE
Q 001163         1002 IYEAPKLECLKQFVPREASGPITHATYSCDSQSIYVAFEE-----GSVGVLTASTLRLRCRINPTAYLPTNPSLRVYPLV 1076 (1134)
Q Consensus      1002 iwd~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 1076 (1134)
                      .||..+.+....-.. .....-.+. ...++.+++.++.+     .....+|..+.+....-.    .|.   .+....+
T Consensus       168 ~~d~~~~~~~~~~~~-~~~~~~~~~-~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~----~p~---~r~~~~~  238 (288)
T d1zgka1         168 CYYPERNEWRMITAM-NTIRSGAGV-CVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP----MKH---RRSALGI  238 (288)
T ss_dssp             EEETTTTEEEECCCC-SSCCBSCEE-EEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC----CSS---CCBSCEE
T ss_pred             Eeecccccccccccc-ccccccccc-cceeeeEEEecCccccccccceeeeeecceeeecccC----ccC---cccceEE
Confidence            888876654322211 111111122 22356666666544     346677777765432211    111   1111111


Q ss_pred             EEecCCCCCEEEEEecCCc-----EEEEeCCCCCCCccCCCC
Q 001163         1077 IAGNPTDPNQFALGLTDGG-----VYIIEPLEAEGRWGTSPP 1113 (1134)
Q Consensus      1077 ~~~~p~~~~~l~s~~~Dg~-----v~vW~~~~~~~~~~~~~~ 1113 (1134)
                      +..   ++++++.|+.++.     |.+||+...  +|..-++
T Consensus       239 ~~~---~~~l~v~GG~~~~~~~~~v~~yd~~~~--~W~~~~~  275 (288)
T d1zgka1         239 TVH---QGRIYVLGGYDGHTFLDSVECYDPDTD--TWSEVTR  275 (288)
T ss_dssp             EEE---TTEEEEECCBCSSCBCCEEEEEETTTT--EEEEEEE
T ss_pred             EEE---CCEEEEEecCCCCeecceEEEEECCCC--EEEECCC
Confidence            121   5788888877664     678888764  5887643

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.34  E-value=9.5  Score=38.65  Aligned_cols=137  Identities=12%  Similarity=0.052  Sum_probs=85.1

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCEEEEEEccC----------CceeeeeeeeecCCCCEEEEEEecCCCceEEEEEeCCCe
Q 001163          419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHG----------GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV  488 (1134)
Q Consensus       419 ~~V~~l~~spd~~~las~s~dg~v~iwd~~~----------~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~  488 (1134)
                      ....-++.++...+++.|+.++ ++|-.+..          +.......    .-..|..++|+.|    .++. ..++.
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~----~ip~v~~vafs~d----~l~v-~~~~~  106 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK----EIPDVIFVCFHGD----QVLV-STRNA  106 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE----ECTTEEEEEEETT----EEEE-EESSE
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc----CCCCeEEEEeeCC----EEEE-EeCCC
Confidence            3566799999888999998886 66776431          11111111    1235899999744    2333 34456


Q ss_pred             EEEEECCCCceeEEecCCCcCEEEEeccccCCccEEEEecCCCcEEEEecCCCCceeeec-----CCCCCeeEEEECcCC
Q 001163          489 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-----APGHSSTMMAYSADG  563 (1134)
Q Consensus       489 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~s~~~  563 (1134)
                      +..++..+-........-..++..+.+.+    ..++....++.+.++++..........     .-...+.+++|++.|
T Consensus       107 l~~~~~~~l~~~~~~~~~~~~~~~~~~~p----~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kg  182 (381)
T d1xipa_         107 LYSLDLEELSEFRTVTSFEKPVFQLKNVN----NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRS  182 (381)
T ss_dssp             EEEEESSSTTCEEEEEECSSCEEEEEECS----SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSC
T ss_pred             EEEEEeeccccccccccccccccceecCC----ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCc
Confidence            78888766544444444456677777644    346667778999999988765433211     112456777888888


Q ss_pred             CEEEEE
Q 001163          564 ARLFSC  569 (1134)
Q Consensus       564 ~~l~~~  569 (1134)
                      +.++++
T Consensus       183 kq~v~~  188 (381)
T d1xipa_         183 FQSFAW  188 (381)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            777765

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=84.52  E-value=6.3  Score=41.54  Aligned_cols=111  Identities=12%  Similarity=0.109  Sum_probs=63.1

Q ss_pred             CceEEEEEeeCCCEEEEEeCCCcEEEEECCCCccccceeeeecCC--CCCCCCCceEEEEcCC---CCEEEEE-e-e---
Q 001163          928 KRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNG--RTASALADTRVQFHLD---QTHLLAV-H-E---  997 (1134)
Q Consensus       928 ~~V~~l~~s~d~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~v~~l~fs~d---g~~l~~~-~-d---  997 (1134)
                      ..-++|+|.|||+++++--.+|.|++++..+++...  ...+...  ..........++|+|+   ..++.++ . .   
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~--i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~  104 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKT--VFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE--EEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEee--cccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCC
Confidence            456799999999999887567999999887765432  2222211  1111246788999986   3444442 1 0   


Q ss_pred             -------c--eEEEEeCCCccc-------ceeeccCCCccCEEEEEEccCCCEEEEEec
Q 001163          998 -------T--QIAIYEAPKLEC-------LKQFVPREASGPITHATYSCDSQSIYVAFE 1040 (1134)
Q Consensus       998 -------~--~i~iwd~~~~~~-------~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~ 1040 (1134)
                             +  .+..+.......       +...........-..|.|.|||.+.++.++
T Consensus       105 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence                   1  133333322211       101111111223468999999998777664

>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.50  E-value=0.92  Score=39.37  Aligned_cols=67  Identities=18%  Similarity=0.299  Sum_probs=50.4

Q ss_pred             ccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccccccccCC
Q 001163           67 RYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLENFRDNEQLSKYG  134 (1134)
Q Consensus        67 ~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~  134 (1134)
                      ++.. ++|.++-+.||||+..|..++|..|+.+--.-+.....+++++|..+....+..+++....+.
T Consensus        41 EL~~-lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~I~~L~~i~~~~~l~~n~~~~~~r  107 (149)
T d2nxpa1          41 ELSQ-LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFR  107 (149)
T ss_dssp             HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGC
T ss_pred             HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCHHHHhhhHHHHHHh
Confidence            3444 999999999999999999999999999643334444568888888887776666555444333

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=81.53  E-value=18  Score=32.42  Aligned_cols=110  Identities=11%  Similarity=0.105  Sum_probs=55.3

Q ss_pred             cEEEEecCCCcEEEEecCCCCceeeecCCCCCeeEEEECcCC--CEEEEEe--cCCCCCeEEEEEeCCCCeeEEEecCCC
Q 001163          522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADG--ARLFSCG--TNKEGESYLVEWNESEGAVKRTYHGLG  597 (1134)
Q Consensus       522 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~--~~~~~~~~i~~wd~~~~~~~~~~~~~~  597 (1134)
                      ++++.+...|.+.++-+..++.....   ..+|.... .|..  .++...-  ..+.....|++-++...-....+....
T Consensus        27 ~ll~~~~seG~vni~~l~g~~~vkLt---kePI~~~~-~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~spk  102 (313)
T d2hu7a1          27 KLLVVGFSEGSVNAYLYDGGETVKLN---REPINSVL-DPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVK  102 (313)
T ss_dssp             EEEEEEEETTEEEEEEESSSSCEECC---SSCCSEEC-EECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTSC
T ss_pred             cEEEEEeccceEEEEEEeCCEEEEEe---cccccCcC-CCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCCc
Confidence            57888888899999887755443322   22222211 1111  1221111  011223345555554322233333333


Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeEEE
Q 001163          598 KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASI  636 (1134)
Q Consensus       598 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  636 (1134)
                      .-.|.+++.. +.+.+++|+......+|-++.|++....
T Consensus       103 ~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~  140 (313)
T d2hu7a1         103 PMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELA  140 (313)
T ss_dssp             SBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEE
T ss_pred             eEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeec
Confidence            1134444443 3467778887777888888887755443