Citrus Sinensis ID: 001184
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1130 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LRZ0 | 1131 | Topless-related protein 2 | yes | no | 0.997 | 0.996 | 0.775 | 0.0 | |
| Q84JM4 | 1108 | Topless-related protein 3 | no | no | 0.978 | 0.998 | 0.709 | 0.0 | |
| Q94AI7 | 1131 | Protein TOPLESS OS=Arabid | no | no | 0.980 | 0.979 | 0.630 | 0.0 | |
| Q0WV90 | 1120 | Topless-related protein 1 | no | no | 0.970 | 0.979 | 0.627 | 0.0 | |
| Q27GK7 | 1135 | Topless-related protein 4 | no | no | 0.969 | 0.964 | 0.619 | 0.0 | |
| Q00808 | 1356 | Vegetative incompatibilit | yes | no | 0.247 | 0.206 | 0.270 | 1e-14 | |
| P74442 | 1191 | Uncharacterized WD repeat | N/A | no | 0.190 | 0.180 | 0.276 | 1e-11 | |
| Q93847 | 395 | Uncharacterized WD repeat | yes | no | 0.185 | 0.531 | 0.268 | 2e-11 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | no | no | 0.526 | 0.389 | 0.210 | 3e-10 | |
| Q54KL5 | 335 | WD repeat-containing prot | no | no | 0.175 | 0.591 | 0.261 | 1e-09 |
| >sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2 | Back alignment and function desciption |
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Score = 1840 bits (4765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 879/1134 (77%), Positives = 990/1134 (87%), Gaps = 7/1134 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKESVH+LEQESGFFFN+KYFEEKALAGEWDE+EKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR+DRAKAVEIL KDLKVF+TFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLN 180
LENFRENEQLSKYGDT+SAR+IM ELKKLIEANPLFR+KL FPS K SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPVAAVAKPATYAPLGAHAVPF- 239
WQHQLCKNPRPNPDIKTLF+DHSCSP NGARA TPV LPVAAVA+P+ + PLG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPVAAVARPSNFVPLGVHGGPFQ 240
Query: 240 PPAVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDY 299
A NANALAGWM N NPSSS+ S VVAAS P+QP+QV+ LKHPRAPSN+LG++DY
Sbjct: 241 SNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQVNELKHPRAPSNSLGLMDY 300
Query: 300 PSSDHEQLKKRLRASQSVDEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFH 359
S+DHEQL KRLR++Q+ +E TYP S SLDDLPR V T+ QGS V+SMDFHP H
Sbjct: 301 QSADHEQLMKRLRSAQTSNEVTYPAHSHPPA-SLDDLPRNVVSTIRQGSVVISMDFHPSH 359
Query: 360 HTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419
HTLL VGC GE+TLW+VG RE++V++PFKIW+M+ CS++ Q +IVK+ SISV+RVAWSP
Sbjct: 360 HTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRVAWSP 419
Query: 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL 479
DGN +GV+FTKHLIH+Y YQGS DL Q LEIDAHVG VNDLAF++PNKQ+C+VTCGDDKL
Sbjct: 420 DGNLLGVSFTKHLIHVYAYQGS-DLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDKL 478
Query: 480 IRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA 539
I+VWDLSG+KLF FEGHEAPVYS+CPHQKENI FIFSTA+DGKIKAWLYDNVGSRVDYDA
Sbjct: 479 IKVWDLSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSRVDYDA 538
Query: 540 PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTT 599
PG WCTTMLYSADGSRLFSCGTSKEGDS LVEWNESEGALKRTY+GFRKKSAGVVQFDTT
Sbjct: 539 PGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKKSAGVVQFDTT 598
Query: 600 RNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659
RNR LA GEDNQIKFW+MDN N+LT EAEGGLP+LPRLRFNK+GNLL VTTAD G KIL
Sbjct: 599 RNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADNGFKIL 658
Query: 660 ANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILN 719
AN DGLR LRA E R++E S+AS +MKV SA+ ++I+P + K E +D SPARP+ I N
Sbjct: 659 ANTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSISPAIGKIEHMDAGSPARPTPIPN 718
Query: 720 GADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSG 779
G ++ +R +EKPRNL+ + DK+KP ELTEIVDP QCR V MP+S DS SKVARLLYTNSG
Sbjct: 719 GIEAMSRTMEKPRNLDSV-DKSKPLELTEIVDPTQCRQVTMPDSKDSVSKVARLLYTNSG 777
Query: 780 IGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCV 839
+G+LAL SNGVQ+LWKW R EQNP+GKATA+V PQHWQP++GLLM NDVPEN E VPC+
Sbjct: 778 VGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSGLLMANDVPENPEGSVPCI 837
Query: 840 ALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTI 899
ALSKNDSYVMSA GGKVSLFNMM FKVMTTFM PPPASTFLAFHPQDNNIIAIGMEDS+I
Sbjct: 838 ALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSSI 897
Query: 900 QIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQL 959
IYNVRVDEVKTKLKGHQKHITGLAFST LNILVSSG+DAQL FW D+WEK+KS AIQL
Sbjct: 898 HIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFFWTADSWEKKKSSAIQL 957
Query: 960 PAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSC 1019
P GK PVG+TRVQFH+DQ++LLV+HETQLAIYD SKMECI +WVPQ+ LSSPI+SA+YSC
Sbjct: 958 PPGKAPVGDTRVQFHNDQIQLLVSHETQLAIYDASKMECIHKWVPQEALSSPITSASYSC 1017
Query: 1020 NSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLA 1079
NSQL+YA+F DG+I VFDA+SLRLRCRIAPSAYM Q +PNS +FP V+T+HPQEPNQLA
Sbjct: 1018 NSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQPTPNSAPIFPQVITAHPQEPNQLA 1077
Query: 1080 VGLTDGSVKVIEPSETERKWGVAVPVDN---GTDNCRTVTSSATNNPTPEQFQR 1130
VGL+DGSVKVIEPSE R+WGV V + GT+N R +SSA NN + +Q QR
Sbjct: 1078 VGLSDGSVKVIEPSELSRRWGVGVAAGSDKAGTENGRPSSSSAANNSSSDQIQR 1131
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Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1646 bits (4262), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 803/1132 (70%), Positives = 929/1132 (82%), Gaps = 26/1132 (2%)
Query: 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKESVHRLE+ESGFFFN KYF+EK LAGEWD++E YLSGF
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNTKYFDEKVLAGEWDDVETYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR ++AKAVEILV+DL+VFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQEKAKAVEILVQDLRVFSTFNEELYKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLN 180
L+NFRENEQLSKYGDT++AR IML ELKKLIEANPLFRDKL+FP+L++SRLRTLINQSLN
Sbjct: 121 LQNFRENEQLSKYGDTKTARGIMLGELKKLIEANPLFRDKLMFPTLRSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPVAAVAKPATYAPLGAHAVPFP 240
WQHQLCKNPRPNPDIKTLF DH+C+ PNG AP+ V PV + KPA Y LG H VPFP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCTLPNGPLAPSAVNQPVTTLTKPAAYPSLGPH-VPFP 239
Query: 241 PAVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDYP 300
P AAANA ALA WM A+ +S++Q++VV + +P NQ+S+LK PR P T G++DY
Sbjct: 240 PGPAAANAGALASWMAAASGASAVQAAVVTPALMPQPQNQMSILKRPRTPPATPGIVDYQ 299
Query: 301 SSDHEQLKKRLRASQSVDEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHH 360
+ DHE L KRLR + SV+E TYP P QQA WSL+DLP A +HQGS+V SM+F+P +
Sbjct: 300 NPDHE-LMKRLRPAPSVEEVTYPAPRQQAPWSLEDLPTKAALALHQGSTVTSMEFYPMQN 358
Query: 361 TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420
TLL+VG GEITLW++ RERLVS+PFKIWDMSNCS QA I K++ ISV+RVAWSPD
Sbjct: 359 TLLLVGSATGEITLWELAARERLVSRPFKIWDMSNCSHQFQALIAKETPISVTRVAWSPD 418
Query: 421 GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480
GNFIGVAFTKHLI LY + G NDL Q EIDAHVG VNDLAF+ PN+QLC++TCGDDKLI
Sbjct: 419 GNFIGVAFTKHLIQLYAFSGPNDLRQHTEIDAHVGAVNDLAFANPNRQLCVITCGDDKLI 478
Query: 481 RVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP 540
+VWD+SGRK F FEGH+APVYS+CPH KENI FIFSTA+DGKIKAWLYDN+GSRVDYDAP
Sbjct: 479 KVWDVSGRKHFTFEGHDAPVYSICPHYKENIQFIFSTAIDGKIKAWLYDNLGSRVDYDAP 538
Query: 541 GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTR 600
G WCT MLYSADG+RLFSCGTSK+GDS LVEWNESEG++KRTY F+KK AGVVQFDT++
Sbjct: 539 GKWCTRMLYSADGTRLFSCGTSKDGDSFLVEWNESEGSIKRTYKEFQKKLAGVVQFDTSK 598
Query: 601 NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660
N LA GED QIKFWDM+N+N+LTST+AEGGLP+LP LRFNK+GNLL VTTAD G KILA
Sbjct: 599 NHFLAVGEDGQIKFWDMNNINVLTSTDAEGGLPALPHLRFNKDGNLLAVTTADNGFKILA 658
Query: 661 NADGLRALRAIETRAYETSRASTEMK-VPGSAVVTTITPVLSKAERVDRSSPARPSTILN 719
N G R+LRA+ET A ET R + K VPG+ PV S +V+R SP R S +LN
Sbjct: 659 NPAGFRSLRAMETPASETMRTPVDFKAVPGA-------PVASVNCKVERGSPVRHSQMLN 711
Query: 720 GADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSG 779
G D + I +D +DK K W+L EI+DP QC +P++ S++KV +LLYTNSG
Sbjct: 712 GVDPSKSRI------DDSTDKPKSWQLAEILDPSQCFQATLPDTAGSSTKVVQLLYTNSG 765
Query: 780 IGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPE-NAEDVVPC 838
GILAL SNG+Q+LWKW EQNPSGKATA V PQHWQP++GLLMTNDV N E+ PC
Sbjct: 766 AGILALGSNGIQRLWKWVPNEQNPSGKATATVVPQHWQPNSGLLMTNDVSGVNLENAAPC 825
Query: 839 VALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDST 898
+ALSKNDSYVMSA GGKVSLFNMM FKVMTTFM PPPASTFLAFHPQDNN+IAIGMEDST
Sbjct: 826 IALSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNVIAIGMEDST 885
Query: 899 IQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQ 958
I IYNVRVDEVK+KLKGHQK ITGLAFST LNILVSSG+DAQ+ FW+ DTWEKRKS+AIQ
Sbjct: 886 IHIYNVRVDEVKSKLKGHQKRITGLAFSTALNILVSSGADAQICFWSIDTWEKRKSVAIQ 945
Query: 959 LPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYS 1018
+PAGK G+TRVQFH DQ+R+LV HETQLA++D SKMECIRQW+PQD LS+PISSA Y+
Sbjct: 946 MPAGKAANGDTRVQFHVDQLRILVVHETQLAVFDASKMECIRQWIPQDSLSAPISSAVYA 1005
Query: 1019 CNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQL 1078
CNSQLIY TF DG+IGVFDADSLRLRCRI+PSAY+ Q +Q + PLVV +HPQ+PNQ
Sbjct: 1006 CNSQLIYTTFRDGNIGVFDADSLRLRCRISPSAYLPQG---NQGLSPLVVAAHPQDPNQF 1062
Query: 1079 AVGLTDGSVKVIEPSETERKWGVAVPVDNGTDNCRTVTSSATNNPTPEQFQR 1130
AVGL DGSVK++EP+E E KWG+ P + + S T+N TPEQ QR
Sbjct: 1063 AVGLNDGSVKMMEPTEGEGKWGMIPPSE------AINSPSTTSNQTPEQLQR 1108
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Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1451 bits (3755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 721/1144 (63%), Positives = 869/1144 (75%), Gaps = 36/1144 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKE+VH+LEQESGFFFNMKYFE++ G WDE+EKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+HDR KAV+ILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLN 180
LENFRENEQLSKYGDT+SAR IMLVELKKLIEANPLFRDKL FP+L+ SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLP-VAAVAKPATYAPLGAHAVPF 239
WQHQLCKNPRPNPDIKTLFVDHSC PPNGARAP+PV P + + K + PLGAH PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHG-PF 239
Query: 240 PPAVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDY 299
P A+ LAGWM ++PSS +V A + P+ + LKHPR P T +DY
Sbjct: 240 QP-TASPVPTPLAGWM--SSPSSVPHPAVSAGAIALGGPSIPAALKHPRTPP-TNASLDY 295
Query: 300 PSSDHEQLKKRLRASQSVDEATYPVPSQQATWS------------LDDLPRAVACTMHQG 347
PS+D E + KR R DE V ++S DDLP+ VA T+ QG
Sbjct: 296 PSADSEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQG 355
Query: 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKD 407
SS +SMDFHP TLL+VG G+I LW+VG RERLV K FK+WD+S CSM LQAA+VK+
Sbjct: 356 SSPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKE 415
Query: 408 SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNK 467
+SV+RV WSPDG+ GVA+++H++ LY+Y G D+ Q LEIDAHVGGVND++FS PNK
Sbjct: 416 PVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNK 475
Query: 468 QLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW 526
QLC++TCGDDK I+VWD +G K FEGHEAPVYSVCPH KENI FIFSTA+DGKIKAW
Sbjct: 476 QLCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAW 535
Query: 527 LYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGF 586
LYDN+GSRVDYDAPG WCTTM YSADG+RLFSCGTSK+G+S +VEWNESEGA+KRTY GF
Sbjct: 536 LYDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGF 595
Query: 587 RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNL 646
K+S GVVQFDTT+NR LAAG+D IKFWDMD V +LT+ + +GGL + PR+RFNKEG+L
Sbjct: 596 HKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSL 655
Query: 647 LVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERV 706
L V+ + IKI+AN+DGLR L E + E+S+ + +++ + A
Sbjct: 656 LAVSGNENVIKIMANSDGLRLLHTFENISSESSKPAI------NSIAAAAAAAATSAGHA 709
Query: 707 DRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDS 766
DRS+ +NG DS KP E+ +DK+K W+LTE+ +P QCR + +PE+
Sbjct: 710 DRSANVVSIQGMNG-DSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLRV 768
Query: 767 ASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTN 826
A K++RL++TNSG ILAL SN + LWKW R E+N +GKATA++ PQ WQP++G+LMTN
Sbjct: 769 A-KISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGILMTN 827
Query: 827 DVPE-NAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQ 885
DV E N E+ VPC ALSKNDSYVMSA GGK+SLFNMM FK M TFM PPPA+TFLAFHPQ
Sbjct: 828 DVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ 887
Query: 886 DNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
DNNIIAIGM+DSTIQIYNVRVDEVK+KLKGH K ITGLAFS LN+LVSSG+DAQL WN
Sbjct: 888 DNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWN 947
Query: 946 TDTWEKRKSIAIQLPAGK--LPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWV 1003
TD WEK++S + LP G+ +TRVQFH DQ LV HETQLAIY+ +K+EC++QW
Sbjct: 948 TDGWEKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQWA 1007
Query: 1004 PQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTV 1063
++ L +PI+ A +SC+SQL+YA+F D ++ VF + +LRLRCR+ PSAY+ + NS V
Sbjct: 1008 VRESL-APITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNS-NV 1065
Query: 1064 FPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWGVAVPVDNGTDN----CRTVTSSA 1119
PLV+ +HPQEPN AVGL+DG V + EP E+E KWGVA P +NG+ + +V +SA
Sbjct: 1066 HPLVIAAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGASA 1125
Query: 1120 TNNP 1123
++ P
Sbjct: 1126 SDQP 1129
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Transcriptional corepressor. May repress the expression of root-promoting genes in the top half of the embryo to allow proper differentiation of the shoot pole during the transition stage of embryogenesis. Regulates the expression of PLT1 and PLT2. Negative regulator of jasmonate responses. Negative regulator of auxin responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 1445 bits (3741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 718/1144 (62%), Positives = 866/1144 (75%), Gaps = 47/1144 (4%)
Query: 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKE+VH+LEQESGFFFNMKYFE++ G WDE+EKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDRHDR KAV+ILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLN 180
LENFRENEQLSKYGDT+SAR IMLVELKKLIEANPLFRDKL FP+L+TSRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLP-VAAVAKPATYAPLGAHAVPF 239
WQHQLCKNPRPNPDIKTLFVDHSC PN ARAP+PV P + ++ K + PLGAH PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHG-PF 239
Query: 240 PPAVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDY 299
P + LAGWM ++PSS +V P+ + LKHPR P + +DY
Sbjct: 240 QPTPSPV-PTPLAGWM--SSPSSVPHPAVSGGPIALGAPSIQAALKHPRTPPSN-SAVDY 295
Query: 300 PSSDHEQLKKRLRASQSVDEATYPV-------PSQ-----QATWSLDDLPRAVACTMHQG 347
PS D + + KR R DE + V P Q Q + DDLP+ VA T+ QG
Sbjct: 296 PSGDSDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHNQTFKAPDDLPKTVARTLSQG 355
Query: 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKD 407
SS +SMDFHP TLL+VG G+I LW+VG RERLV K FK+WD+S CSM LQAA+VK+
Sbjct: 356 SSPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKE 415
Query: 408 SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNK 467
+SV+RV WSPDG+ GVA+++H++ LY+Y G D+ Q LEIDAHVGGVND+AFS PNK
Sbjct: 416 PVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNK 475
Query: 468 QLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW 526
QLC+ TCGDDK I+VWD +G K + FEGHEAPVYS+CPH KENI FIFSTA+DGKIKAW
Sbjct: 476 QLCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAW 535
Query: 527 LYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGF 586
LYDN+GSRVDY+APG WCTTM YSADG+RLFSCGTSK+G+S +VEWNESEGA+KRTY GF
Sbjct: 536 LYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGF 595
Query: 587 RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNL 646
K+S GVVQFDTT+NR LAAG+D IKFWDMD + +LT+ +A+GGL + PR+RFNKEG+L
Sbjct: 596 HKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSL 655
Query: 647 LVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERV 706
L V+ D IK++AN+DGLR L +E + E+S+ P ++ V
Sbjct: 656 LAVSANDNMIKVMANSDGLRLLHTVENLSSESSK-----------------PAINSIPMV 698
Query: 707 DRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDS 766
+R + +NG DS KP E+ +DK+K W+LTE+ +P QCR + +PE+
Sbjct: 699 ERPASVVSIPGMNG-DSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENM-R 756
Query: 767 ASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTN 826
+K++RL++TNSG ILAL SN + LWKW R ++N +GKATA++ PQ WQP++G+LMTN
Sbjct: 757 VTKISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGILMTN 816
Query: 827 DVPE-NAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQ 885
DV E N E+ VPC ALSKNDSYVMSA GGK+SLFNMM FK M TFM PPPA+TFLAFHPQ
Sbjct: 817 DVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ 876
Query: 886 DNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
DNNIIAIGM+DSTIQIYNVRVDEVK+KLKGH K ITGLAFS LN+LVSSG+DAQL WN
Sbjct: 877 DNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWN 936
Query: 946 TDTWEKRKSIAIQLPAGK--LPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWV 1003
TD WEK+KS +Q+P G+ + +TRVQFH DQV LV HETQLAIY+ +K+EC++QW
Sbjct: 937 TDGWEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQW- 995
Query: 1004 PQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTV 1063
P ++PI+ A +SC+SQLIY +F D +I VF + +LRLRCR+ PSAY+ + NS V
Sbjct: 996 PVRESAAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSNSN-V 1054
Query: 1064 FPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWGVAVPVDNGTDNCRTVT----SSA 1119
PLV+ +HPQE N AVGL+DG V + EP E+E KWGVA P +NG+ + T T +SA
Sbjct: 1055 HPLVIAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPENGSASAVTATPSVGASA 1114
Query: 1120 TNNP 1123
++ P
Sbjct: 1115 SDQP 1118
|
Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1399 bits (3621), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 701/1132 (61%), Positives = 859/1132 (75%), Gaps = 37/1132 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGF 60
MSSLSRELVFLILQFLDEEKFK++VHRLE+ESGFFFNM+YFE+ AGEWD++EKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKDTVHRLEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+ D AKAV+ILVK+LKVFSTFNEELFKEIT LLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKKDHAKAVDILVKELKVFSTFNEELFKEITMLLT 120
Query: 121 LENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLN 180
L NFRENEQLSKYGDT+SAR IML ELKKLIEANPLFRDKL FPSLK SRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKSARGIMLGELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPV-AAVAKPATYAPLGAHAVPF 239
WQHQLCKNPRPNPDIKTLFVDH+C PNGA P+P T + +V K + PLGAH PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHTCGHPNGAHTPSPTTNHLMGSVPKVGGFPPLGAHG-PF 239
Query: 240 PPAVAAANANALAGWMMNANPSSSIQSSVVAASSLPV-QPNQ-VSVLKHPR---APSNTL 294
P A +LAGWM P+ S+Q V+A + + PN VS+LK R P+N+L
Sbjct: 240 QPTPAPL-TTSLAGWM----PNPSVQHPTVSAGPIGLGAPNSAVSMLKRERPRSPPTNSL 294
Query: 295 GMIDYPSSDHEQLKKRLRA---SQSVDE-------ATYPVPSQ-QATWSLDDLPRAVACT 343
M DY ++D E + KR R S V+ TYP S AT+S DDLP+ V+
Sbjct: 295 SM-DYQTADSESVLKRPRPFGISDGVNNLPVNVLPVTYPGQSHAHATYSTDDLPKNVSRI 353
Query: 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAA 403
+ QGS++ SMDFHP T+L+VG G+I +W+VG RE+LVS+ FK+WD++ C++ LQA+
Sbjct: 354 LSQGSAIKSMDFHPVQQTMLLVGTNLGDIAIWEVGSREKLVSRSFKVWDLATCTVNLQAS 413
Query: 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFS 463
+ + + +V+RV WSPDG +GVA++KH++H+Y+Y G DL LEIDAH G VNDLAFS
Sbjct: 414 LASEYTAAVNRVVWSPDGGLLGVAYSKHIVHIYSYHGGEDLRNHLEIDAHAGNVNDLAFS 473
Query: 464 YPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGK 522
PN+QLC+VTCG+DK I+VWD ++G KL FEGHEAPVYSVCPHQKENI FIFSTAVDGK
Sbjct: 474 QPNQQLCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPHQKENIQFIFSTAVDGK 533
Query: 523 IKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582
IKAWLYDN+GSRVDYDAPG CT+M Y ADG+RLFSCGTSKEG+S +VEWNESEGA+KRT
Sbjct: 534 IKAWLYDNMGSRVDYDAPGRSCTSMAYCADGTRLFSCGTSKEGESFIVEWNESEGAVKRT 593
Query: 583 YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642
Y+G K+S GVVQFDT +N+ L AG++ Q+KFWDMD+V++L+ST AEGGLPS P LR NK
Sbjct: 594 YLGLGKRSVGVVQFDTMKNKFLVAGDEFQVKFWDMDSVDLLSSTAAEGGLPSSPCLRINK 653
Query: 643 EGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSK 702
EG LL V+T D GIKILANA+G R L ++ R ++SRA G V T TP S
Sbjct: 654 EGTLLAVSTTDNGIKILANAEGSRILHSMANRGLDSSRAPPGSVAKGPIVGTFGTPNSST 713
Query: 703 AERV---DRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVA 759
+ +RS P T LNG + + + KPR + D ++K+K W+LTEI + Q R +
Sbjct: 714 GMSLSMGERSGPVASVTGLNGDNRSLPDV-KPR-IADDAEKSKTWKLTEISERSQLRTLR 771
Query: 760 MPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPS 819
+P++ A +V +L+YTNSG ILAL N KLWKW ++E+N GKA + V PQ WQPS
Sbjct: 772 LPDTLLPA-RVVKLIYTNSGGAILALAENAAHKLWKWQKSERNLLGKANSNVPPQLWQPS 830
Query: 820 NGLLMTNDVPE-NAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPAST 878
+G+LMTND E N EDVVPC ALSKNDSYVMSA GGK+SLFNMM FK MTTFM+PPPA+T
Sbjct: 831 SGVLMTNDTREGNKEDVVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMAPPPAAT 890
Query: 879 FLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSD 938
LAFHPQDNNIIAIGM+DS+IQIYNVRVDEVK+KLKGHQK +TGLAFS LN+LVSSG+D
Sbjct: 891 SLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTGLAFSNVLNVLVSSGAD 950
Query: 939 AQLIFWNTDTWEKRKSIAIQLPAGKL--PVGETRVQFHSDQVRLLVNHETQLAIYDGSKM 996
+QL W+ D WEK+ S IQ+P+G P+ TRVQFH DQ+ +LV H +QLAIY+ K+
Sbjct: 951 SQLCVWSMDGWEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHVLVVHASQLAIYEAPKL 1010
Query: 997 ECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQA 1056
E ++QW+P++ S ++ A YSC+SQ IYA F DGS+ + A +L+L+CRI P++Y+ +
Sbjct: 1011 ENMKQWIPKES-SGSVTDAVYSCDSQSIYAAFDDGSVSILTATTLQLKCRIGPNSYLP-S 1068
Query: 1057 SPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWGVAVPVDNG 1108
+P+S+ V+P V +HP EPNQ AVGLTDG V VIEP E KWG++ P +NG
Sbjct: 1069 NPSSR-VYPATVAAHPSEPNQFAVGLTDGGVHVIEPPGPEGKWGISAPPENG 1119
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 88/325 (27%), Positives = 132/325 (40%), Gaps = 45/325 (13%)
Query: 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIV 405
GSSV+S+ F P + G GD I +WD C+ L+
Sbjct: 966 HGSSVLSVAFSP-DGQRVASGSGDKTIKIWDTA--------------SGTCTQTLEG--- 1007
Query: 406 KDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP 465
SV VA+SPDG + I ++ S Q+LE H G V + FS P
Sbjct: 1008 --HGGSVWSVAFSPDGQRVASGSDDKTIKIWD-TASGTCTQTLE--GHGGWVQSVVFS-P 1061
Query: 466 NKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVC--PHQKENIHFIFSTAVDGK 522
+ Q + + DD I++WD +SG EGH V+SV P + + S ++DG
Sbjct: 1062 DGQR-VASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQR----VASGSIDGT 1116
Query: 523 IKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582
IK W + + G W ++ +S DG R+ S D + W+ + G +T
Sbjct: 1117 IKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRV----ASGSIDGTIKIWDAASGTCTQT 1172
Query: 583 YIGFRKKSAGVVQ---FDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLR 639
G G VQ F R+ + D IK WD + + E GG + +
Sbjct: 1173 LEGH----GGWVQSVAFSPDGQRVASGSSDKTIKIWDTASGTCTQTLEGHGGW--VQSVA 1226
Query: 640 FNKEGNLLVVTTADQGIKILANADG 664
F+ +G + ++D IKI A G
Sbjct: 1227 FSPDGQRVASGSSDNTIKIWDTASG 1251
|
Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|P74442|Y143_SYNY3 Uncharacterized WD repeat-containing protein slr0143 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0143 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 109/239 (45%), Gaps = 24/239 (10%)
Query: 389 KIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSL 448
KIWD+ +LQ +K SV V++SPDG + + L+ ++ L
Sbjct: 626 KIWDLDGN--LLQT--LKGHQDSVYSVSFSPDGEILASTSRDRTVRLWHWRSGKTLA--- 678
Query: 449 EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQK 508
+ H V+D FS P+ Q + C D + IR+WDL G + QF E + V H
Sbjct: 679 VLGGHTKSVDDAQFS-PDGQTLVSVCRDGQ-IRLWDLDGNLIRQFGLPEVAFFGVNWHPN 736
Query: 509 ENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSH 568
N+ + A DG ++ W + + T ++++ DG +LFS + +
Sbjct: 737 GNLLAV--AADDGTVRLWTPQGE-IKATLSGHDEFVTRVVFTPDGKQLFSSSS----NGS 789
Query: 569 LVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG-EDNQIKFWDM----DNVNM 622
++ W+ S LK+ Y G+ + G+ + +LA G E+N +K WDM D VN+
Sbjct: 790 VIHWSTSGKMLKK-YQGYPEAIFGLAL--ASNGALLAIGAENNLVKVWDMSPKSDLVNL 845
|
Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) |
| >sp|Q93847|YZLL_CAEEL Uncharacterized WD repeat-containing protein K04G11.4 OS=Caenorhabditis elegans GN=K04G11.4 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 104/227 (45%), Gaps = 17/227 (7%)
Query: 400 LQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVND 459
L A I S+S + +SPDG ++G I ++ D + H G+N+
Sbjct: 98 LVAEIPNAHKKSISGIKFSPDGRYMGSGSADCSIKIWRM----DFVYEKTLMGHRLGINE 153
Query: 460 LAFSYPNKQLCIVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA 518
FS+ + IV+C DDKL++V+D+ SGR + +GH V+ C + + I S +
Sbjct: 154 --FSWSSDSKLIVSCSDDKLVKVFDVSSGRCVKTLKGHTNYVFCCCFNPSGTL--IASGS 209
Query: 519 VDGKIKAWLYDNVGSRVDYDAPGLW--CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE 576
D I+ W N G+ + + PG +++ ++ DG+ L S D + W+ +
Sbjct: 210 FDETIRIWCARN-GNTI-FSIPGHEDPVSSVCFNRDGAYL----ASGSYDGIVRIWDSTT 263
Query: 577 GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNML 623
G +T I V+F ILA+ +N +K WD + +L
Sbjct: 264 GTCVKTLIDEEHPPITHVKFSPNGKYILASNLNNTLKLWDYQKLRVL 310
|
Caenorhabditis elegans (taxid: 6239) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 143/680 (21%), Positives = 266/680 (39%), Gaps = 85/680 (12%)
Query: 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGL-RERLVSKPFKIWDMSNCSMMLQAAIVKD 407
SV+++ F P L G G + W+ +E L K W
Sbjct: 866 SVLTVAFSP-DGKLFATGDSGGIVRFWEAATGKELLTCKGHNSW---------------- 908
Query: 408 SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNK 467
V+ V +S DG + + L+ L H V + FS PN
Sbjct: 909 ----VNSVGFSQDGKMLASGSDDQTVRLWDISSGQCL---KTFKGHTSRVRSVVFS-PNS 960
Query: 468 QLCIVTCGDDKLIRVWDLS-GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW 526
L + + D+ +R+WD+S G L+ F+GH VYSV + ++ + + + D ++ W
Sbjct: 961 -LMLASGSSDQTVRLWDISSGECLYIFQGHTGWVYSVAFNLDGSM--LATGSGDQTVRLW 1017
Query: 527 LYDNVGSRVDYDAPG-LWCT-TMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYI 584
D S+ Y G C ++++S+DG+ L S D + W+ S G T
Sbjct: 1018 --DISSSQCFYIFQGHTSCVRSVVFSSDGAML----ASGSDDQTVRLWDISSGNCLYTLQ 1071
Query: 585 GFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPR-LRFNKE 643
G VV F + + G+D ++ WD+ + N L + + G S R L F+
Sbjct: 1072 GHTSCVRSVV-FSPDGAMLASGGDDQIVRLWDISSGNCLYTLQ---GYTSWVRFLVFSPN 1127
Query: 644 GNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKA 703
G L ++DQ +++ + + + + T T+ + P A + + + +
Sbjct: 1128 GVTLANGSSDQIVRLW----DISSKKCLYTLQGHTNWVNAVAFSPDGATLASGSG--DQT 1181
Query: 704 ERVDRSSPARPSTILNGADSAARGI----EKPRNLEDISDKT-KPWELTEIVDPLQCRVV 758
R+ S ++ IL G S + + SD+T + WE ++ +C
Sbjct: 1182 VRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWE----INSSKCLCT 1237
Query: 759 AMPESTDSASKV----ARLLYTNSGIGILALWS-------NGVQKLWKW-NRTEQNPSGK 806
++ S V +L + S + LW + Q W N NP G
Sbjct: 1238 FQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNPDGS 1297
Query: 807 ATAAVAPQH----WQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGK-VSLFNM 861
A+ + W+ S+ + + V V S + + + S + V L+++
Sbjct: 1298 MLASGSGDQTVRLWEISSSKCL--HTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSI 1355
Query: 862 MNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHIT 921
+ + + TF+ + F P D I+A G D T++++++ + L+GH +
Sbjct: 1356 SSGECLYTFLGHTNWVGSVIFSP-DGAILASGSGDQTVRLWSISSGKCLYTLQGHNNWVG 1414
Query: 922 GLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLL 981
+ FS + +L S D + WN + E ++ + + + V F SD + L
Sbjct: 1415 SIVFSPDGTLLASGSDDQTVRLWNISSGECLYTLHGHINSVR------SVAFSSDGLILA 1468
Query: 982 VNHETQ-LAIYDGSKMECIR 1000
+ + + ++D ECI+
Sbjct: 1469 SGSDDETIKLWDVKTGECIK 1488
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q54KL5|WDR5_DICDI WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 100/210 (47%), Gaps = 12/210 (5%)
Query: 411 SVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLC 470
S+S V +SPDG ++ A I ++ G+ D ++ H G++D+A+S +K +C
Sbjct: 48 SISSVKFSPDGKWLASASADKTIKIW---GAYDGKFERTLEGHKEGISDIAWSQDSKLIC 104
Query: 471 IVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYD 529
+ DDK I++WD+ SG+ + +GH+ V+ V + + N+ I S + D ++ W +
Sbjct: 105 --SASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNL--IVSGSFDENVRIWDVN 160
Query: 530 NVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK 589
A T + ++ DG+ + S S +G + W+ + G L T K
Sbjct: 161 TGECTKMISAHSDPVTGVHFNRDGTLVVS--GSYDGTVRI--WDTTTGQLLNTISTEDGK 216
Query: 590 SAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619
V+F +LA DN ++ W +N
Sbjct: 217 EVSFVKFSPNGKFVLAGTLDNTLRLWSYNN 246
|
Dictyostelium discoideum (taxid: 44689) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1130 | ||||||
| 22331124 | 1131 | Topless-related 2 protein [Arabidopsis t | 0.997 | 0.996 | 0.775 | 0.0 | |
| 7939576 | 1161 | unnamed protein product [Arabidopsis tha | 0.996 | 0.969 | 0.774 | 0.0 | |
| 297830294 | 1131 | hypothetical protein ARALYDRAFT_479149 [ | 0.997 | 0.996 | 0.773 | 0.0 | |
| 297804604 | 1125 | predicted protein [Arabidopsis lyrata su | 0.994 | 0.999 | 0.768 | 0.0 | |
| 449454049 | 1127 | PREDICTED: topless-related protein 3-lik | 0.992 | 0.995 | 0.758 | 0.0 | |
| 225450677 | 1132 | PREDICTED: topless-related protein 3 [Vi | 0.996 | 0.994 | 0.773 | 0.0 | |
| 356535043 | 1130 | PREDICTED: topless-related protein 3-lik | 0.995 | 0.995 | 0.762 | 0.0 | |
| 87162556 | 1128 | Lissencephaly type-1-like homology motif | 0.993 | 0.995 | 0.755 | 0.0 | |
| 356576819 | 1131 | PREDICTED: topless-related protein 3-lik | 0.995 | 0.994 | 0.757 | 0.0 | |
| 255542820 | 1132 | WD-repeat protein, putative [Ricinus com | 0.996 | 0.994 | 0.764 | 0.0 |
| >gi|22331124|ref|NP_188306.2| Topless-related 2 protein [Arabidopsis thaliana] gi|302393776|sp|Q9LRZ0.2|TPR2_ARATH RecName: Full=Topless-related protein 2 gi|332642350|gb|AEE75871.1| Topless-related 2 protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1840 bits (4765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 879/1134 (77%), Positives = 990/1134 (87%), Gaps = 7/1134 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKESVH+LEQESGFFFN+KYFEEKALAGEWDE+EKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR+DRAKAVEIL KDLKVF+TFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLN 180
LENFRENEQLSKYGDT+SAR+IM ELKKLIEANPLFR+KL FPS K SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPVAAVAKPATYAPLGAHAVPF- 239
WQHQLCKNPRPNPDIKTLF+DHSCSP NGARA TPV LPVAAVA+P+ + PLG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPVAAVARPSNFVPLGVHGGPFQ 240
Query: 240 PPAVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDY 299
A NANALAGWM N NPSSS+ S VVAAS P+QP+QV+ LKHPRAPSN+LG++DY
Sbjct: 241 SNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQVNELKHPRAPSNSLGLMDY 300
Query: 300 PSSDHEQLKKRLRASQSVDEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFH 359
S+DHEQL KRLR++Q+ +E TYP S SLDDLPR V T+ QGS V+SMDFHP H
Sbjct: 301 QSADHEQLMKRLRSAQTSNEVTYPAHSHPPA-SLDDLPRNVVSTIRQGSVVISMDFHPSH 359
Query: 360 HTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419
HTLL VGC GE+TLW+VG RE++V++PFKIW+M+ CS++ Q +IVK+ SISV+RVAWSP
Sbjct: 360 HTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRVAWSP 419
Query: 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL 479
DGN +GV+FTKHLIH+Y YQGS DL Q LEIDAHVG VNDLAF++PNKQ+C+VTCGDDKL
Sbjct: 420 DGNLLGVSFTKHLIHVYAYQGS-DLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDKL 478
Query: 480 IRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA 539
I+VWDLSG+KLF FEGHEAPVYS+CPHQKENI FIFSTA+DGKIKAWLYDNVGSRVDYDA
Sbjct: 479 IKVWDLSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSRVDYDA 538
Query: 540 PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTT 599
PG WCTTMLYSADGSRLFSCGTSKEGDS LVEWNESEGALKRTY+GFRKKSAGVVQFDTT
Sbjct: 539 PGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKKSAGVVQFDTT 598
Query: 600 RNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659
RNR LA GEDNQIKFW+MDN N+LT EAEGGLP+LPRLRFNK+GNLL VTTAD G KIL
Sbjct: 599 RNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADNGFKIL 658
Query: 660 ANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILN 719
AN DGLR LRA E R++E S+AS +MKV SA+ ++I+P + K E +D SPARP+ I N
Sbjct: 659 ANTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSISPAIGKIEHMDAGSPARPTPIPN 718
Query: 720 GADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSG 779
G ++ +R +EKPRNL+ + DK+KP ELTEIVDP QCR V MP+S DS SKVARLLYTNSG
Sbjct: 719 GIEAMSRTMEKPRNLDSV-DKSKPLELTEIVDPTQCRQVTMPDSKDSVSKVARLLYTNSG 777
Query: 780 IGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCV 839
+G+LAL SNGVQ+LWKW R EQNP+GKATA+V PQHWQP++GLLM NDVPEN E VPC+
Sbjct: 778 VGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSGLLMANDVPENPEGSVPCI 837
Query: 840 ALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTI 899
ALSKNDSYVMSA GGKVSLFNMM FKVMTTFM PPPASTFLAFHPQDNNIIAIGMEDS+I
Sbjct: 838 ALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSSI 897
Query: 900 QIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQL 959
IYNVRVDEVKTKLKGHQKHITGLAFST LNILVSSG+DAQL FW D+WEK+KS AIQL
Sbjct: 898 HIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFFWTADSWEKKKSSAIQL 957
Query: 960 PAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSC 1019
P GK PVG+TRVQFH+DQ++LLV+HETQLAIYD SKMECI +WVPQ+ LSSPI+SA+YSC
Sbjct: 958 PPGKAPVGDTRVQFHNDQIQLLVSHETQLAIYDASKMECIHKWVPQEALSSPITSASYSC 1017
Query: 1020 NSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLA 1079
NSQL+YA+F DG+I VFDA+SLRLRCRIAPSAYM Q +PNS +FP V+T+HPQEPNQLA
Sbjct: 1018 NSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQPTPNSAPIFPQVITAHPQEPNQLA 1077
Query: 1080 VGLTDGSVKVIEPSETERKWGVAVPVDN---GTDNCRTVTSSATNNPTPEQFQR 1130
VGL+DGSVKVIEPSE R+WGV V + GT+N R +SSA NN + +Q QR
Sbjct: 1078 VGLSDGSVKVIEPSELSRRWGVGVAAGSDKAGTENGRPSSSSAANNSSSDQIQR 1131
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7939576|dbj|BAA95777.1| unnamed protein product [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1838 bits (4762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 878/1133 (77%), Positives = 989/1133 (87%), Gaps = 7/1133 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKESVH+LEQESGFFFN+KYFEEKALAGEWDE+EKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR+DRAKAVEIL KDLKVF+TFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLN 180
LENFRENEQLSKYGDT+SAR+IM ELKKLIEANPLFR+KL FPS K SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPVAAVAKPATYAPLGAHAVPF- 239
WQHQLCKNPRPNPDIKTLF+DHSCSP NGARA TPV LPVAAVA+P+ + PLG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPVAAVARPSNFVPLGVHGGPFQ 240
Query: 240 PPAVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDY 299
A NANALAGWM N NPSSS+ S VVAAS P+QP+QV+ LKHPRAPSN+LG++DY
Sbjct: 241 SNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQVNELKHPRAPSNSLGLMDY 300
Query: 300 PSSDHEQLKKRLRASQSVDEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFH 359
S+DHEQL KRLR++Q+ +E TYP S SLDDLPR V T+ QGS V+SMDFHP H
Sbjct: 301 QSADHEQLMKRLRSAQTSNEVTYPAHSHPPA-SLDDLPRNVVSTIRQGSVVISMDFHPSH 359
Query: 360 HTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419
HTLL VGC GE+TLW+VG RE++V++PFKIW+M+ CS++ Q +IVK+ SISV+RVAWSP
Sbjct: 360 HTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRVAWSP 419
Query: 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL 479
DGN +GV+FTKHLIH+Y YQGS DL Q LEIDAHVG VNDLAF++PNKQ+C+VTCGDDKL
Sbjct: 420 DGNLLGVSFTKHLIHVYAYQGS-DLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDKL 478
Query: 480 IRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA 539
I+VWDLSG+KLF FEGHEAPVYS+CPHQKENI FIFSTA+DGKIKAWLYDNVGSRVDYDA
Sbjct: 479 IKVWDLSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSRVDYDA 538
Query: 540 PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTT 599
PG WCTTMLYSADGSRLFSCGTSKEGDS LVEWNESEGALKRTY+GFRKKSAGVVQFDTT
Sbjct: 539 PGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKKSAGVVQFDTT 598
Query: 600 RNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659
RNR LA GEDNQIKFW+MDN N+LT EAEGGLP+LPRLRFNK+GNLL VTTAD G KIL
Sbjct: 599 RNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADNGFKIL 658
Query: 660 ANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILN 719
AN DGLR LRA E R++E S+AS +MKV SA+ ++I+P + K E +D SPARP+ I N
Sbjct: 659 ANTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSISPAIGKIEHMDAGSPARPTPIPN 718
Query: 720 GADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSG 779
G ++ +R +EKPRNL+ + DK+KP ELTEIVDP QCR V MP+S DS SKVARLLYTNSG
Sbjct: 719 GIEAMSRTMEKPRNLDSV-DKSKPLELTEIVDPTQCRQVTMPDSKDSVSKVARLLYTNSG 777
Query: 780 IGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCV 839
+G+LAL SNGVQ+LWKW R EQNP+GKATA+V PQHWQP++GLLM NDVPEN E VPC+
Sbjct: 778 VGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSGLLMANDVPENPEGSVPCI 837
Query: 840 ALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTI 899
ALSKNDSYVMSA GGKVSLFNMM FKVMTTFM PPPASTFLAFHPQDNNIIAIGMEDS+I
Sbjct: 838 ALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSSI 897
Query: 900 QIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQL 959
IYNVRVDEVKTKLKGHQKHITGLAFST LNILVSSG+DAQL FW D+WEK+KS AIQL
Sbjct: 898 HIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFFWTADSWEKKKSSAIQL 957
Query: 960 PAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSC 1019
P GK PVG+TRVQFH+DQ++LLV+HETQLAIYD SKMECI +WVPQ+ LSSPI+SA+YSC
Sbjct: 958 PPGKAPVGDTRVQFHNDQIQLLVSHETQLAIYDASKMECIHKWVPQEALSSPITSASYSC 1017
Query: 1020 NSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLA 1079
NSQL+YA+F DG+I VFDA+SLRLRCRIAPSAYM Q +PNS +FP V+T+HPQEPNQLA
Sbjct: 1018 NSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQPTPNSAPIFPQVITAHPQEPNQLA 1077
Query: 1080 VGLTDGSVKVIEPSETERKWGVAVPVDN---GTDNCRTVTSSATNNPTPEQFQ 1129
VGL+DGSVKVIEPSE R+WGV V + GT+N R +SSA NN + +Q Q
Sbjct: 1078 VGLSDGSVKVIEPSELSRRWGVGVAAGSDKAGTENGRPSSSSAANNSSSDQIQ 1130
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297830294|ref|XP_002883029.1| hypothetical protein ARALYDRAFT_479149 [Arabidopsis lyrata subsp. lyrata] gi|297328869|gb|EFH59288.1| hypothetical protein ARALYDRAFT_479149 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1835 bits (4754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 877/1134 (77%), Positives = 990/1134 (87%), Gaps = 7/1134 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKESVH+LEQESGFFFN+KYFEEKALAGEWDE+EKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR+DRAKAVEIL KDLKVF+TFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLN 180
LENFRENEQLSKYGDT+SAR+IM ELKKLIEANPLFR+KL FPS K SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPVAAVAKPATYAPLGAHAVPF- 239
WQHQLCKNPRPNPDIKTLF+DHSCSP NGARA TPV LPVAAVA+P+ + PLG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPVAAVARPSNFVPLGVHGGPFQ 240
Query: 240 PPAVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDY 299
P A NANALAGWM N NPSSS+ S VVAAS P+QP+QV+VLKHPRAPSN+LG++DY
Sbjct: 241 PSPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQVNVLKHPRAPSNSLGLMDY 300
Query: 300 PSSDHEQLKKRLRASQSVDEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFH 359
++DHEQL KRLR++Q+ +E TYP S T SLDDLPR V T+ QGS V+SMDFHP H
Sbjct: 301 QNADHEQLMKRLRSAQTSNEVTYPAHSH-PTASLDDLPRNVVSTIRQGSVVISMDFHPSH 359
Query: 360 HTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419
HTLL VGC GE+TLW+VG RE++V++PFKIW+M+ CS++ Q +IVK+ SISV+RVAWSP
Sbjct: 360 HTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRVAWSP 419
Query: 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL 479
DGN +GV+FTKHLIH+Y YQGS DL Q LEIDAHVG VNDLAF++PNKQ+C+VTCGDDKL
Sbjct: 420 DGNLLGVSFTKHLIHVYAYQGS-DLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDKL 478
Query: 480 IRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA 539
I+VWDLSG+KLF FEGHEAPVYS+CPHQKENI FIFSTA+DGKIKAWLYDNVGSRVDYDA
Sbjct: 479 IKVWDLSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSRVDYDA 538
Query: 540 PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTT 599
PG WCTTMLYSADGSRLFSCGTSKEGDS LVEWNESEGALKRTY+GFRKKS GVVQFDTT
Sbjct: 539 PGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKKSPGVVQFDTT 598
Query: 600 RNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659
RNR LA GEDNQ+KFWDMDN N+LT+ EAEGGLP+LPRLRFNK+GNLL VTTAD G KIL
Sbjct: 599 RNRFLAVGEDNQVKFWDMDNTNLLTTVEAEGGLPNLPRLRFNKDGNLLAVTTADNGFKIL 658
Query: 660 ANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILN 719
AN DGLR LRA E R++E S+AS +MKV SA+ T+I+P + K E +D SPARP+ I N
Sbjct: 659 ANTDGLRTLRAYEARSFEASKASIDMKVSPSAMATSISPAVGKIEHMDTDSPARPTPIPN 718
Query: 720 GADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSG 779
G ++ +R +EKPRNL+ + DK+K ELTEIVDP QCR V MP+S DS SKVARLLYTNSG
Sbjct: 719 GIEAMSRTMEKPRNLDPV-DKSKTLELTEIVDPTQCRQVTMPDSKDSVSKVARLLYTNSG 777
Query: 780 IGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCV 839
+G+LAL SNGVQ+LWKW+R EQNP+GKATA+V P HWQP++GLLM NDVPEN E VPC+
Sbjct: 778 VGVLALGSNGVQRLWKWSRNEQNPTGKATASVTPHHWQPNSGLLMANDVPENPEGAVPCI 837
Query: 840 ALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTI 899
ALSKNDSYVMSA GGKVSLFNMM FKVMTTFM PPPASTFLAFHPQDNNIIAIGMEDS+I
Sbjct: 838 ALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSSI 897
Query: 900 QIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQL 959
IYNVRVDEVKTKLKGHQKHITGLAFST LNILVSSG+DAQL FW D+WEK+KS IQL
Sbjct: 898 HIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFFWTADSWEKKKSSVIQL 957
Query: 960 PAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSC 1019
P GK PVG+TRVQFH+DQ++LLV+HETQLAIYD SKMECI +WVPQD LSSPI+SA+YSC
Sbjct: 958 PPGKAPVGDTRVQFHNDQIQLLVSHETQLAIYDASKMECIHKWVPQDALSSPITSASYSC 1017
Query: 1020 NSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLA 1079
NSQL+YA+F DG+I VFDA+SLRLRCRIAPSAYM Q +PNS + P V+T+HPQEPNQLA
Sbjct: 1018 NSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQPTPNSALIIPHVITTHPQEPNQLA 1077
Query: 1080 VGLTDGSVKVIEPSETERKWGVAVPVDN---GTDNCRTVTSSATNNPTPEQFQR 1130
VGL+DGSVKV+EPSE R+WGV V + GT+N R +SSA NN + +Q QR
Sbjct: 1078 VGLSDGSVKVLEPSELSRRWGVGVAASSDKAGTENGRPSSSSAANNSSSDQIQR 1131
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297804604|ref|XP_002870186.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297316022|gb|EFH46445.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1805 bits (4676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 869/1131 (76%), Positives = 985/1131 (87%), Gaps = 7/1131 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKESVH+LEQESG+FFN+KYFEEKAL GEWDE+EKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGYFFNLKYFEEKALLGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR+DRAKAVEIL KDLKVF+TFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLN 180
LENFREN+QLSKYGDT+SAR IML EL+KLIEANPLFR+KL P+ K SRLRTLINQSLN
Sbjct: 121 LENFRENDQLSKYGDTKSARGIMLGELRKLIEANPLFREKLALPTFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPVAAVAKPATYAPLGAHAVPF- 239
WQHQLCKNPRPNPDIKTLF DH+CSP NGARAPTPV LPV AVAKP+TYAPLG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCSPQNGARAPTPV-LPVGAVAKPSTYAPLGVHGGPFQ 239
Query: 240 PPAVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDY 299
P + A NANALAGWM N NPSSS+ VVA+S P+QPNQV++LKHPR PSN+LGM+DY
Sbjct: 240 PTSAPAPNANALAGWMANPNPSSSVPGGVVASSPFPMQPNQVAMLKHPRPPSNSLGMMDY 299
Query: 300 PSSDHEQLKKRLRASQSVDEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFH 359
S+DHEQL KRLR+ + DE TYP SQ T SLDDLPR V TM QGS+V SMDFHP H
Sbjct: 300 QSADHEQLMKRLRSGPTGDEVTYPAHSQ-PTASLDDLPRNVVSTMRQGSAVTSMDFHPSH 358
Query: 360 HTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419
HTLL VGC GE TLW+VG RE+L ++PFKIW+M++CS++ Q +IVKD S+SVSRV+WSP
Sbjct: 359 HTLLTVGCSSGEFTLWEVGSREKLFTEPFKIWNMASCSVIFQGSIVKDPSVSVSRVSWSP 418
Query: 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL 479
DGNFIGVAF+KHLIH+Y+YQGS +L Q LE+DAHVG V+DLAF++PNKQLCIVTCG+DKL
Sbjct: 419 DGNFIGVAFSKHLIHIYSYQGS-ELRQHLEMDAHVGCVHDLAFAHPNKQLCIVTCGEDKL 477
Query: 480 IRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA 539
I+VWDLSG+KL+ FEGHEAPVYS+CPHQKENI FIFSTA+DGKIKAWLYDNVGSRVDYDA
Sbjct: 478 IKVWDLSGKKLYTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSRVDYDA 537
Query: 540 PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTT 599
PG WCTTMLYSADGSRLFSCGTSKEGDS LVEWNESEGA+KRTY+GFRKKS G VQFDTT
Sbjct: 538 PGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGAIKRTYLGFRKKSTGSVQFDTT 597
Query: 600 RNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659
RNR +A GEDNQ+KFWDMDN N+LT+ EA+GGLPSLPRLRFNKEGNLL V+TAD G KIL
Sbjct: 598 RNRFMAVGEDNQVKFWDMDNTNILTTVEADGGLPSLPRLRFNKEGNLLAVSTADNGFKIL 657
Query: 660 ANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILN 719
AN DGLR LR +E R++E SRAST+MKV SA+VT I P + K E++D SPARP+ I N
Sbjct: 658 ANGDGLRTLRVMEARSFEASRASTDMKVSSSAMVTNIGPSIGKMEQMDIGSPARPTPIPN 717
Query: 720 GADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSG 779
G D+ +R +E PRN+E + +K+KP EL EIVDP QCR V MP+S DS SKVARLLYTNSG
Sbjct: 718 GVDAMSRTMENPRNVESV-EKSKPSELMEIVDPAQCRQVTMPDSKDSVSKVARLLYTNSG 776
Query: 780 IGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCV 839
+GILAL +NGVQ+LWKW+R+EQNP+GKATA+V PQHWQP++GLLMTNDVPEN E VPC+
Sbjct: 777 VGILALGTNGVQRLWKWSRSEQNPTGKATASVTPQHWQPNSGLLMTNDVPENPEGTVPCI 836
Query: 840 ALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTI 899
ALSKNDSYVMSA GGKVSLFNMM FKVMTTFM PPPASTFLAFHPQDNNIIAIGMEDSTI
Sbjct: 837 ALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTI 896
Query: 900 QIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQL 959
IYNVRVDEVKTKLKGHQKHITGLAFS LNILVSSG+DAQL FW+ D+WEK+KS AIQL
Sbjct: 897 HIYNVRVDEVKTKLKGHQKHITGLAFSATLNILVSSGADAQLFFWSADSWEKKKSSAIQL 956
Query: 960 PAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSC 1019
PAGK PVG+TRVQFH+DQV LLV+H+TQ+AIYDGSKMECI++WVPQ+ LSSPI+ A+YSC
Sbjct: 957 PAGKSPVGDTRVQFHNDQVHLLVSHDTQIAIYDGSKMECIQKWVPQESLSSPITCASYSC 1016
Query: 1020 NSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLA 1079
NS L+YA+F DGSIGVFDA+ LRLRCRI PSAYM Q + NS + PLV+T+HPQEPNQ+A
Sbjct: 1017 NSHLVYASFADGSIGVFDAEYLRLRCRIGPSAYMPQPTSNSAPIMPLVITAHPQEPNQIA 1076
Query: 1080 VGLTDGSVKVIEPSETERKWGVAVPVDNGTDNCRTVTSSATNNPTPEQFQR 1130
VGL+DGSVKV+E E R+WGV GT+N R ++SA NN +Q QR
Sbjct: 1077 VGLSDGSVKVLETPEPFRRWGVVEKA--GTENGRPSSASAANNSGSDQIQR 1125
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449454049|ref|XP_004144768.1| PREDICTED: topless-related protein 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1802 bits (4667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 861/1135 (75%), Positives = 988/1135 (87%), Gaps = 13/1135 (1%)
Query: 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKESVHRLE+ESGF+FNMKYFE+K AGEW+E+EKYLSG+
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFYFNMKYFEDKVQAGEWEEVEKYLSGY 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR D+AKAVEILV DLKVFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRSDKAKAVEILVSDLKVFSTFNEELYKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLN 180
L NFRENEQLSKYGDT++AR+IML+ELKKLIEANPLFRDKLVFP+LK+SRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKAARSIMLIELKKLIEANPLFRDKLVFPALKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPVAAVAKPATYAPLGAHAVPFP 240
WQHQLCKNPRPNPDIKTLF+DH+CSPPNG APTPV LPVA KPA YAPLGAH+ PFP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFMDHTCSPPNGPLAPTPVNLPVA---KPAPYAPLGAHS-PFP 236
Query: 241 PAVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDYP 300
P A ANANALAGWM NA+ SSS+Q++VV ASS+PV NQVS+LKH R P + GM+DY
Sbjct: 237 PTGATANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSILKHARTPPSNPGMVDYQ 296
Query: 301 SSDHEQLKKRLRASQSVDEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHH 360
+ +H+QL KRLR++QSV+E TYP P QQA+WS++DLPR VA T+HQGS+V SMDFHP HH
Sbjct: 297 NPEHDQLMKRLRSAQSVEEVTYPAPRQQASWSIEDLPRTVAFTLHQGSTVTSMDFHPTHH 356
Query: 361 TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420
TLL+VG +GE+TLW++G+RERL+SKPFK+WD+S+ S+ QAAIVKD+ ISVSRV WSPD
Sbjct: 357 TLLLVGSNNGEVTLWELGIRERLISKPFKLWDLSSRSLAFQAAIVKDTPISVSRVTWSPD 416
Query: 421 GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480
G F+GVAFTKHL+HLY+Y SN+L Q EIDAHVGGVNDLAF++PNKQLC+VTCG+DKLI
Sbjct: 417 GTFVGVAFTKHLVHLYSYNSSNELNQQSEIDAHVGGVNDLAFAHPNKQLCVVTCGEDKLI 476
Query: 481 RVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP 540
+VWD+ GRKLF FEGHEA VYS+CPH KENI FIFSTA+DGKIKAWLYD++GSRVDYDAP
Sbjct: 477 KVWDIGGRKLFTFEGHEASVYSICPHHKENIQFIFSTALDGKIKAWLYDHMGSRVDYDAP 536
Query: 541 GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTR 600
G WCTTMLYSADGSRLFSCGTSK+GDS+LVEWNESEGA+KRTY+GFRKKS GVVQFDTT+
Sbjct: 537 GKWCTTMLYSADGSRLFSCGTSKDGDSYLVEWNESEGAIKRTYLGFRKKSTGVVQFDTTQ 596
Query: 601 NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660
N LA GED+QIKFWDMDNVN+LT T+AEGGLPSLPRLRFNKEGNLL VTT D G KILA
Sbjct: 597 NHFLAVGEDSQIKFWDMDNVNILTYTDAEGGLPSLPRLRFNKEGNLLAVTT-DNGFKILA 655
Query: 661 NADGLRALRAIE-TRAYETSRASTE--MKVPGSAVVTTITPVLSKAERVDRSSPARPSTI 717
NA G+R+L+AIE T +E R+ E +KV G + V +++PV K V+RSSP RP +I
Sbjct: 656 NAVGMRSLKAIESTTPFEALRSPMESALKVSGPSAVASVSPVNCK---VERSSPVRPPSI 712
Query: 718 LNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTN 777
+NG + R ++K R +ED DK KPW+L EIVDP CR+V MP++ DS+ KV RLLYTN
Sbjct: 713 INGVEGLGRNLDKARTVEDAIDKAKPWQLAEIVDPASCRLVTMPDNADSSHKVVRLLYTN 772
Query: 778 SGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDV-PENAEDVV 836
SG+G+LAL SNG+QKLWKW R EQNPSGKATA V PQHWQP++GLLMTNDV N E+ V
Sbjct: 773 SGVGLLALGSNGIQKLWKWTRNEQNPSGKATANVVPQHWQPNSGLLMTNDVLGVNLEEAV 832
Query: 837 PCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED 896
PC+ALSKNDSYVMSA GGKVSLFNMM FKVMTTFM PPPASTFLAFHPQDNNIIAIGMED
Sbjct: 833 PCIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMED 892
Query: 897 STIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIA 956
STI IYNVRVDEVK+KLKGHQK ITGLAFST+LNILVSSG+DAQL W+ DTWEKRKSI
Sbjct: 893 STIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCLWSIDTWEKRKSIT 952
Query: 957 IQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAA 1016
IQLPAGK PVG+TRVQFHSDQ+RLLV HETQ+AIYD SKM+ IRQWVPQD L +PIS AA
Sbjct: 953 IQLPAGKAPVGDTRVQFHSDQIRLLVVHETQIAIYDASKMDRIRQWVPQDALPAPISYAA 1012
Query: 1017 YSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPN-SQTVFPLVVTSHPQEP 1075
YSCNSQL+YATF DG++GVFDAD+LRLRCRIAPS Y+ A N SQ ++PLVV +HP +P
Sbjct: 1013 YSCNSQLVYATFCDGNVGVFDADTLRLRCRIAPSVYLPSAVLNSSQAIYPLVVATHPLDP 1072
Query: 1076 NQLAVGLTDGSVKVIEPSETERKWGVAVPVDNGTDNCRTVTSSATNNPTPEQFQR 1130
NQLA+GL+DGSVKVIEP+E+E KWGV+ P+DNG N RT +SS T+N TP+Q QR
Sbjct: 1073 NQLAIGLSDGSVKVIEPTESEGKWGVSPPMDNGILNGRTASSSTTSNHTPDQIQR 1127
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225450677|ref|XP_002283157.1| PREDICTED: topless-related protein 3 [Vitis vinifera] gi|296089734|emb|CBI39553.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1794 bits (4647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 879/1136 (77%), Positives = 994/1136 (87%), Gaps = 10/1136 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKESVH+LE+ESGFFFNMKYFEEK AGEWDE+EKYLSG+
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWDEVEKYLSGY 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR D+AKAVEILV DL+VFSTFNE+L+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVTDLRVFSTFNEDLYKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLN 180
L NFRENEQLSKYGDT++AR+IML+ELKKLIEANPLFRDKLVFP+LK+SRLRTLINQSLN
Sbjct: 121 LGNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLVFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPVAAVAKPATYAPLGAHAVPFP 240
WQHQLCKNPRPNPDIKTLF DH+C+P NGA TPV LPVAAVAKPA + LG H PFP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCAPSNGALGATPVNLPVAAVAKPAAFTSLGTHG-PFP 239
Query: 241 PAVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDYP 300
PA AAANA+ALAGWM NA SS++Q+SVV ASS+P+ PNQVS+LK P P TLGM+DY
Sbjct: 240 PAAAAANASALAGWMANAAASSTVQASVVTASSMPMPPNQVSILKRPITPPATLGMVDYQ 299
Query: 301 SSDHEQLKKRLRASQSVDEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHH 360
+ + EQL KRLR +Q+V+E TYP QQA+WSLDDLPR VA TM QGS+V SMDFHP HH
Sbjct: 300 NLEQEQLMKRLRLAQNVEEVTYPASRQQASWSLDDLPRMVAFTMQQGSTVTSMDFHPSHH 359
Query: 361 TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420
TLL+VG G+G+ITLW+V LRERLV+K FKIWD++ CS+ +QA+I KD+SI VSRVAWSPD
Sbjct: 360 TLLLVGSGNGDITLWEVALRERLVTKQFKIWDVTACSLPVQASIAKDASIPVSRVAWSPD 419
Query: 421 GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480
GNFIGVAFTKHLIHLY Y GSN+L Q LEIDAHVG VND+AF++PNKQLC+VTCGDDKLI
Sbjct: 420 GNFIGVAFTKHLIHLYAYTGSNELRQHLEIDAHVGCVNDIAFAHPNKQLCVVTCGDDKLI 479
Query: 481 RVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP 540
+VWD++GRKLF FEGHEAPVYS+CPH KE+I FIFSTA+DGKIKAWLYDN+GSRVDYDAP
Sbjct: 480 KVWDMNGRKLFNFEGHEAPVYSICPHHKESIQFIFSTAMDGKIKAWLYDNIGSRVDYDAP 539
Query: 541 GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTR 600
GLWCTTMLYSADGSRLFSCGTSK+GDS LVEWNESEGA+KRTY GFRKKSAGVVQFDTT+
Sbjct: 540 GLWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQ 599
Query: 601 NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660
N LAAGEDNQIKFWDMDNVN+L S +A+GGLPS+PRLRFNKEGNLL VTTAD G KILA
Sbjct: 600 NHFLAAGEDNQIKFWDMDNVNVLASIDADGGLPSVPRLRFNKEGNLLAVTTADNGFKILA 659
Query: 661 NADGLRALRAIETRAYETSRASTE---MKVPG-SAVVTTITPVLSKAERVDRSSPARPST 716
A GLR+LRAIET ++E R E +KV G SA I+P +V+RSSP +PS+
Sbjct: 660 TAAGLRSLRAIETPSFEALRTPVEASALKVAGTSATAANISP---NEPKVERSSPIKPSS 716
Query: 717 ILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYT 776
ILNG D+AAR EKPR+LED++D++KPW+L EIV+P QCR V M +++DS+SKV+RLLYT
Sbjct: 717 ILNGVDTAARSTEKPRSLEDVTDRSKPWQLAEIVEPGQCRQVTMSDNSDSSSKVSRLLYT 776
Query: 777 NSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPE-NAEDV 835
NSG+GILAL SNGVQKLWKW R +QNPSGKAT+ V PQHWQP++GLLMTNDV N E+
Sbjct: 777 NSGVGILALGSNGVQKLWKWFRNDQNPSGKATSNVVPQHWQPNSGLLMTNDVSGVNPEEA 836
Query: 836 VPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGME 895
VPC+ALSKNDSYVMSA GGKVSLFNMM FKVMTTFMSPPPASTFLAFHPQDNNIIAIGME
Sbjct: 837 VPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGME 896
Query: 896 DSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSI 955
DSTI IYNVRVDEVK+KLKGHQK +TGLAFST+LNILVSSG+DAQL W+ DTWEKRKS+
Sbjct: 897 DSTIHIYNVRVDEVKSKLKGHQKRVTGLAFSTSLNILVSSGADAQLCMWSIDTWEKRKSV 956
Query: 956 AIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSA 1015
+IQ+PAGK P+G+TRVQFHSDQ+RLLV HETQLA YD SKME IRQW+PQD LS+PIS A
Sbjct: 957 SIQMPAGKAPIGDTRVQFHSDQIRLLVFHETQLATYDASKMERIRQWIPQDGLSAPISYA 1016
Query: 1016 AYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPN-SQTVFPLVVTSHPQE 1074
AYSCNSQLIYATF DG+IGVFDADSLRLRCRIAPSAY+SQA N SQ +P+VV SHPQE
Sbjct: 1017 AYSCNSQLIYATFCDGNIGVFDADSLRLRCRIAPSAYLSQAGLNGSQPPYPVVVASHPQE 1076
Query: 1075 PNQLAVGLTDGSVKVIEPSETERKWGVAVPVDNGTDNCRTVTSSATNNPTPEQFQR 1130
NQLAVGLTDGSVKVIEP E+E KWGV+ P +NG RT +SS T+N TP+Q QR
Sbjct: 1077 SNQLAVGLTDGSVKVIEPPESEGKWGVSPPAENGILITRTASSSTTSNHTPDQIQR 1132
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356535043|ref|XP_003536058.1| PREDICTED: topless-related protein 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1783 bits (4619), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 866/1135 (76%), Positives = 979/1135 (86%), Gaps = 10/1135 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGF 60
M+SLSRELVFLILQFL+EEKFKESVH+LE+ESGFFFNMKYFEEK AGEW+E+EKYLSGF
Sbjct: 1 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+ D+AKAVEILV DLK+FSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDQQDKAKAVEILVGDLKMFSTFNEELYKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLN 180
L NFRENEQLSKYGDT++AR+IML+ELKKLIEANPLFRDKL+FP+LK+SRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLIFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPVAAVAKPATYAPLGAHAVPFP 240
WQHQLCKNPRPNPDIKTLF DH+C+PPNG APTP+ LP+AAVAKPATY PLGAH PFP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCAPPNGPLAPTPINLPIAAVAKPATYTPLGAHG-PFP 239
Query: 241 PAVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDYP 300
PA A ANANALAGWM NA+ SSS+Q++VV AS++PV NQ PR P GM+DY
Sbjct: 240 PAAATANANALAGWMANASASSSVQAAVVTASTIPVPQNQXXXXXRPRTPPANPGMVDYQ 299
Query: 301 SSDHEQLKKRLRASQSVDEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHH 360
++DH+QL KRLR SV+E +YP+ ++QA+WSLDDLPR V T+HQGSSV SMDFHP HH
Sbjct: 300 NADHDQLMKRLRPGHSVEEVSYPL-ARQASWSLDDLPRTVTMTLHQGSSVTSMDFHPSHH 358
Query: 361 TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420
TLL+VG +GEITLW++ LRE+LVSKPFKIWD+S CS+ QAA VKD+ ISVSRV WSPD
Sbjct: 359 TLLLVGSNNGEITLWELSLREKLVSKPFKIWDVSACSLPFQAAAVKDAPISVSRVTWSPD 418
Query: 421 GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480
G+F+G+AFTKHLIHLY GSN+L Q +E+DAHVGGVNDLAF++PNKQLCIVTCGDDKLI
Sbjct: 419 GSFVGIAFTKHLIHLYACTGSNELTQRIEVDAHVGGVNDLAFAHPNKQLCIVTCGDDKLI 478
Query: 481 RVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP 540
+VWDL+GRKLF FEGHEAPVYS+CPH KENI FIFSTA+DGKIKAWLYDN+GSRVDYDAP
Sbjct: 479 KVWDLNGRKLFSFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAP 538
Query: 541 GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTR 600
G WCTTMLYSADG+RLFSCGTSK+G+S LVEWNESEGA+KRTY GFRKKS GVVQFDTT+
Sbjct: 539 GHWCTTMLYSADGTRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSTGVVQFDTTQ 598
Query: 601 NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660
NR LAAGED Q+KFWDMDN+N+L STEA+GGL SLPRLRFNKEGN+L VTT D G KILA
Sbjct: 599 NRFLAAGEDGQVKFWDMDNINLLISTEADGGLQSLPRLRFNKEGNILAVTTMDNGFKILA 658
Query: 661 NADGLRALRAIETRAYETSRA---STEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTI 717
NA GLR+LR IET A+E R+ ST +KV + ++PV K V+RSSP RPS I
Sbjct: 659 NASGLRSLRTIETPAFEALRSPIESTPIKVVSGSSTVNVSPVNCK---VERSSPVRPSPI 715
Query: 718 LNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTN 777
LNG D R +EKPR +ED++D+ KPW+L+EI+DP+QCR V MPESTDS+SKV RLLYTN
Sbjct: 716 LNGVDPMGRSVEKPRTVEDVTDRAKPWQLSEILDPVQCRSVTMPESTDSSSKVIRLLYTN 775
Query: 778 SGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPE-NAEDVV 836
S +GILAL SNG+QKLWKW R+E NP+GKATA V P HWQP+NGLLMTND+ N E+ V
Sbjct: 776 SAVGILALGSNGIQKLWKWARSELNPTGKATANVVPLHWQPNNGLLMTNDISGVNLEEAV 835
Query: 837 PCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED 896
PC+ALSKNDSYVMSA GGKVSLFNMM FKVMTTFM PPPASTFLAFHPQDNNIIAIGM+D
Sbjct: 836 PCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMDD 895
Query: 897 STIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIA 956
STI IYNVRVDEVK+KLKGHQK ITGLAFSTNLNILVSSG+DA L W+ DTWEKRK+I
Sbjct: 896 STIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHLCVWSIDTWEKRKAIP 955
Query: 957 IQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAA 1016
IQLPAGK PVG+TRVQFHSDQ+RLLV HETQLAIYD SKME IRQWVPQDVLS+PIS AA
Sbjct: 956 IQLPAGKSPVGDTRVQFHSDQLRLLVVHETQLAIYDASKMERIRQWVPQDVLSAPISYAA 1015
Query: 1017 YSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQAS-PNSQTVFPLVVTSHPQEP 1075
YSCNSQLIYATF D +IGVFDADSLRLRCRIAPS +S A+ SQ V+PLVV +HP EP
Sbjct: 1016 YSCNSQLIYATFCDANIGVFDADSLRLRCRIAPSICLSPAALSGSQGVYPLVVAAHPLEP 1075
Query: 1076 NQLAVGLTDGSVKVIEPSETERKWGVAVPVDNGTDNCRTVTSSATNNPTPEQFQR 1130
NQ AVGLTDGSVKVIEP+E+E KWG P DNG N RT +SS T+N T +Q QR
Sbjct: 1076 NQFAVGLTDGSVKVIEPNESEGKWGTCPPTDNGILNGRTGSSSTTSNHTADQAQR 1130
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|87162556|gb|ABD28351.1| Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1782 bits (4616), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 857/1135 (75%), Positives = 977/1135 (86%), Gaps = 12/1135 (1%)
Query: 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGF 60
M+SLSRELVFLILQFLDEEKFKESVH+LE+ESGFFFNMKYFEEK AGEW+E+EKYL+GF
Sbjct: 1 MTSLSRELVFLILQFLDEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLAGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR D+ KAVEILV DLKVFSTFNEEL+KEITQLL
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKPKAVEILVGDLKVFSTFNEELYKEITQLLI 120
Query: 121 LENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLN 180
L NFRENEQLSKYGDT++AR+IML+ELKKLIEANPLFRDKL FP+LK+SRLRTLINQSLN
Sbjct: 121 LNNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPVAAVAKPATYAPLGAHAVPFP 240
WQHQLCKNPRPNPDIKTLF+DH+CSP NG APTPV LP++AVAKP Y LGAH PFP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFIDHTCSPSNGPLAPTPVNLPISAVAKPVAYTSLGAHG-PFP 239
Query: 241 PAVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDYP 300
P VA ANANALAGWM NA+ SSS+Q++VV +S++PV NQVS+LK PR P T G++DY
Sbjct: 240 PNVATANANALAGWMANASASSSVQAAVVTSSTMPVPQNQVSILKRPRTPPATPGIVDYQ 299
Query: 301 SSDHEQLKKRLRASQSVDEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHH 360
++DHEQL KRLR SV+E +YPV ++QA+WSLDDLPR VA T+HQGSSV S+DFHP HH
Sbjct: 300 NTDHEQLMKRLRPGHSVEEVSYPV-ARQASWSLDDLPRTVAMTLHQGSSVTSLDFHPSHH 358
Query: 361 TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420
TLL+VG +GEITLW++ LRERLVSKPFKIWD+S CS+ QAA VKD+ ISVSRV WSPD
Sbjct: 359 TLLLVGSSNGEITLWELSLRERLVSKPFKIWDVSACSLPFQAAAVKDAPISVSRVTWSPD 418
Query: 421 GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480
GNF+GVAFTKHLIHLY Y GSN+L Q +E+DAHVGGVNDL+F+ PNKQLCIVTCGDDKLI
Sbjct: 419 GNFVGVAFTKHLIHLYAYTGSNELAQRIEVDAHVGGVNDLSFALPNKQLCIVTCGDDKLI 478
Query: 481 RVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP 540
+VWD +GR+LF FEGH+APVYS+CPH KENI FIFSTA+DGKIKAWLYDN+GSRVDYDAP
Sbjct: 479 KVWDANGRRLFTFEGHDAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAP 538
Query: 541 GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTR 600
G WCTTMLYSADGSRLFSCGTSK+G+S LVEWNESEGA+KRTY GFRKKS GVVQFDTT+
Sbjct: 539 GHWCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSNGVVQFDTTQ 598
Query: 601 NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660
NR L AGED Q+KFWDMDN+N+L ST+A+GGL LPRL+FNKEGN+L VTT D G KI+A
Sbjct: 599 NRFLVAGEDGQLKFWDMDNINLLASTDADGGLQGLPRLKFNKEGNILAVTTVDNGFKIMA 658
Query: 661 NADGLRALRAIETRAYETSRA---STEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTI 717
NA GLR+LR IET A+E R+ ST +KV GS+ ++PV K V+RSSP RP I
Sbjct: 659 NATGLRSLRTIETPAFEALRSPIESTSIKVSGSSTA-NVSPVNCK---VERSSPVRPPPI 714
Query: 718 LNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTN 777
LNG D +R +EK R +ED +D+TK W+LTEI+DP+QCR V MP++TDS SKV RLLYTN
Sbjct: 715 LNGVDPMSRSVEKSR-VEDATDRTKSWQLTEILDPVQCRSVTMPDTTDSFSKVVRLLYTN 773
Query: 778 SGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPE-NAEDVV 836
S +GILAL SNGVQKLWKW R EQNP+GKATA+V PQ WQP++GLLMTND+ N E+ V
Sbjct: 774 SAVGILALGSNGVQKLWKWARNEQNPTGKATASVVPQRWQPNSGLLMTNDIAGVNLEEAV 833
Query: 837 PCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED 896
PC+ALSKNDSYVMSA GGKVSLFNMM FKVMTTFM PPPASTFLAFHPQDNNII+IGMED
Sbjct: 834 PCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIISIGMED 893
Query: 897 STIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIA 956
STI IYNVRVDEVK+KLKGHQ+ ITGLAFSTNLNILVSSG+DAQ+ W+ DTWEKRKSI
Sbjct: 894 STIHIYNVRVDEVKSKLKGHQRRITGLAFSTNLNILVSSGADAQMCVWSIDTWEKRKSIP 953
Query: 957 IQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAA 1016
IQLPAGK PVG+TRVQFHSDQ+RLLV HETQLAIYDGSKME IRQW+PQD LS+PIS AA
Sbjct: 954 IQLPAGKSPVGDTRVQFHSDQIRLLVVHETQLAIYDGSKMERIRQWIPQDALSAPISYAA 1013
Query: 1017 YSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQAS-PNSQTVFPLVVTSHPQEP 1075
YSCNSQLIYA+F D +IGVFDADSLRLRCRIAP +S A+ SQ V+PLV+ +HP EP
Sbjct: 1014 YSCNSQLIYASFCDANIGVFDADSLRLRCRIAPPICLSSAALSRSQAVYPLVIAAHPLEP 1073
Query: 1076 NQLAVGLTDGSVKVIEPSETERKWGVAVPVDNGTDNCRTVTSSATNNPTPEQFQR 1130
NQ AVGL+DGSVKVIEPSE+E KWG + P+DNG N + + S T+N T +Q QR
Sbjct: 1074 NQFAVGLSDGSVKVIEPSESEGKWGSSPPMDNGIMNGKAPSPSTTSNHTADQAQR 1128
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356576819|ref|XP_003556527.1| PREDICTED: topless-related protein 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1780 bits (4611), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 860/1136 (75%), Positives = 974/1136 (85%), Gaps = 11/1136 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGF 60
M+SLSRELVFLILQFL+EEKFKESVH+LE+ESGFFFNMKYFEEK AGEW+E+EKYLSGF
Sbjct: 1 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+ D+AKAVEILV DLK+FSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDQQDKAKAVEILVGDLKMFSTFNEELYKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLN 180
L NFRENEQLSKYGDT++AR+IML+ELKKLIEANPLFRDKL+FP+LK+SRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLIFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPVAAVAKPATYAPLGAHAVPFP 240
WQHQLCKNPRPNPDIKTLF DH+C+PPNG APTPV LP+AAVAKPA Y LGAH PFP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCAPPNGPLAPTPVNLPIAAVAKPAAYTSLGAHG-PFP 239
Query: 241 PAVAAANANALA-GWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDY 299
PA AA GWM NA+ SSS+Q++VV AS++PV NQV +LK PR P GMIDY
Sbjct: 240 PAAAATANANALAGWMANASASSSVQAAVVTASTMPVPQNQVPILKRPRTPPANPGMIDY 299
Query: 300 PSSDHEQLKKRLRASQSVDEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFH 359
++DHEQL KRLR SV+E +YP+ ++QA+WSLDDLPR V T+HQGSSV SMDFHP H
Sbjct: 300 QNADHEQLMKRLRPGHSVEEVSYPL-ARQASWSLDDLPRTVTMTLHQGSSVTSMDFHPSH 358
Query: 360 HTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419
HTLL+ G +GEI+LW++ LRE+LVSKPFKIWD+S CS+ QAA VKD+ ISVSRV WSP
Sbjct: 359 HTLLLAGSNNGEISLWELSLREKLVSKPFKIWDVSACSLPFQAAAVKDAPISVSRVTWSP 418
Query: 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL 479
DG+F+G+AFTKHLIHLY Y G N+L Q +E+DAHVGGVNDL+F++PNKQ+CIVTCGDDKL
Sbjct: 419 DGSFVGIAFTKHLIHLYAYTGPNELTQRIEVDAHVGGVNDLSFAHPNKQMCIVTCGDDKL 478
Query: 480 IRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA 539
I+VWDL+GRKLF FEGHEAPVYS+CPH KENI FIFSTA+DGKIKAWLYDN+GSRVDYDA
Sbjct: 479 IKVWDLNGRKLFSFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDA 538
Query: 540 PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTT 599
PG WCTTMLYSADG+RLFSCGTSK+G+S LVEWNESEGA+KRTY GFRKKS GVVQFDTT
Sbjct: 539 PGHWCTTMLYSADGTRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSTGVVQFDTT 598
Query: 600 RNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659
+NR LAAGED Q+KFWDMDN+N+L S++A+GGL SLPRLRFNKEGN+L VTT D G KIL
Sbjct: 599 QNRFLAAGEDGQVKFWDMDNINLLISSDADGGLQSLPRLRFNKEGNILAVTTVDNGFKIL 658
Query: 660 ANADGLRALRAIETRAYETSRA---STEMKVPGSAVVTTITPVLSKAERVDRSSPARPST 716
ANA GLR+LR IET A+E R+ ST +KV + ++PV K V+RSSP RPS
Sbjct: 659 ANASGLRSLRTIETPAFEALRSPIESTPIKVVSGSSTVNVSPVNCK---VERSSPVRPSP 715
Query: 717 ILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYT 776
ILNG D R EKPR +ED+ D+ KPW+L+EI+DP+QCR V MPESTDS+SKV RLLYT
Sbjct: 716 ILNGVDPMGRSAEKPRTVEDVIDRAKPWQLSEILDPVQCRSVTMPESTDSSSKVVRLLYT 775
Query: 777 NSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPE-NAEDV 835
NS +GILAL SNG+QKLWKW R+EQNP+GKATA V P HWQP+NGLLMTND+ N E+
Sbjct: 776 NSAVGILALGSNGIQKLWKWARSEQNPTGKATANVVPLHWQPNNGLLMTNDISGVNLEEA 835
Query: 836 VPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGME 895
VPC+ALSKNDSYVMSA GGKVSLFNMM FKVMTTFM PPPASTFLAFHPQDNNIIAIGME
Sbjct: 836 VPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGME 895
Query: 896 DSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSI 955
DSTI IYNVRVDEVK+KLKGHQK ITGLAFSTNLNILVSSG+DA L W+ DTWEKRKSI
Sbjct: 896 DSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHLCVWSIDTWEKRKSI 955
Query: 956 AIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSA 1015
IQLPAGK PVG+TRVQFHSDQ+RLLV HETQLAIYD SKME IRQWVPQDVLS+PIS A
Sbjct: 956 PIQLPAGKSPVGDTRVQFHSDQLRLLVVHETQLAIYDASKMERIRQWVPQDVLSAPISYA 1015
Query: 1016 AYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQAS-PNSQTVFPLVVTSHPQE 1074
AYSCNSQLIYATF D +IGVFDADSLRLRCRIAPS +S A+ SQ V+PLVV +HP E
Sbjct: 1016 AYSCNSQLIYATFCDANIGVFDADSLRLRCRIAPSICLSPAALSGSQGVYPLVVAAHPLE 1075
Query: 1075 PNQLAVGLTDGSVKVIEPSETERKWGVAVPVDNGTDNCRTVTSSATNNPTPEQFQR 1130
PNQ AVGLTDGSVKVIEP+E+E KWG + P+DNG N R +SS T+N T +Q QR
Sbjct: 1076 PNQFAVGLTDGSVKVIEPNESEGKWGTSPPMDNGILNGRAGSSSTTSNHTADQAQR 1131
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255542820|ref|XP_002512473.1| WD-repeat protein, putative [Ricinus communis] gi|223548434|gb|EEF49925.1| WD-repeat protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1778 bits (4604), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 869/1136 (76%), Positives = 975/1136 (85%), Gaps = 10/1136 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGF 60
MSSLSRELVFLILQFL+EEKF ESVH+LE++SGF+FNMKYFEEK AGEW+E+E YLSGF
Sbjct: 1 MSSLSRELVFLILQFLEEEKFMESVHKLEKDSGFYFNMKYFEEKVQAGEWEEVENYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD D+AKAVEILV DLKVFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDGQDKAKAVEILVSDLKVFSTFNEELYKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLN 180
L NFRENEQLSKYGDT++AR+IML+ELKKLIEANPLFRDKL FP+LK+SRLRTLINQSLN
Sbjct: 121 LSNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLGFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPVAAVAKPATYAPLGAHAVPFP 240
WQHQLCKNPRPNPDIKTLF DH+CSPPNG AP PV LPVAAVAKP+ Y LGAH PFP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCSPPNGPLAPAPVNLPVAAVAKPSAYPSLGAHG-PFP 239
Query: 241 PAVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDYP 300
P AAANA ALAGWM NA+ SSS+Q++VV ASS+PV NQVSVLK PR P GM+DY
Sbjct: 240 PTAAAANAGALAGWMANASASSSVQAAVVTASSMPVPQNQVSVLKRPRTPPTAPGMVDYQ 299
Query: 301 SSDHEQLKKRLRASQSVDEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHH 360
+ DHEQL KRLR +QSVDE TYP QQA+WSLDDLPR VA TMHQGS+V SMDFHP H
Sbjct: 300 NPDHEQLMKRLRPAQSVDEVTYPTSRQQASWSLDDLPRTVALTMHQGSAVTSMDFHPSHQ 359
Query: 361 TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420
TLL+VG +GE+TLW++ RERLVSKPFKIW++++CS+ QA+ VKD+ +SV+RV WSPD
Sbjct: 360 TLLLVGSANGEVTLWELVQRERLVSKPFKIWEITSCSLQFQASFVKDAPVSVNRVTWSPD 419
Query: 421 GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480
G+ +G AF KHLIHLY Y GS+DL Q LEIDAH GGVNDLAF++PNKQLC+VTCGDDKLI
Sbjct: 420 GSLVGAAFNKHLIHLYAYTGSSDLRQQLEIDAHAGGVNDLAFAHPNKQLCVVTCGDDKLI 479
Query: 481 RVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP 540
+VWDL GRKLF FEGHEAPVYS+CPH KENI FIFSTA+DGKIKAWLYDNVGSRVDYDAP
Sbjct: 480 KVWDLGGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNVGSRVDYDAP 539
Query: 541 GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKS-AGVVQFDTT 599
G WCTTMLYSADGSRLFSCGTSKEGDS LVEWNESEGA+KR Y GFRKKS AGVVQFDTT
Sbjct: 540 GHWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGAIKRHYAGFRKKSTAGVVQFDTT 599
Query: 600 RNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659
+N LAAGED QIKFWDMDN N+LTS +A+GGLPSLPRLRFNKEGNLL VTTAD G KI+
Sbjct: 600 QNHFLAAGEDGQIKFWDMDNTNVLTSIDADGGLPSLPRLRFNKEGNLLAVTTADNGFKII 659
Query: 660 ANADGLRALRAIETRAYETSRASTE---MKVPGSAVVTTITPVLSKAERVDRSSPARPST 716
ANA GLRALRA+ET +E R+ E +KV G++ V I+PV K V+RSSP RPS
Sbjct: 660 ANAAGLRALRAVETPGFEALRSPIESAAIKVSGASGVANISPVNLK---VERSSPVRPSP 716
Query: 717 ILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYT 776
ILNG D +R +EK R ++D+ DKTKPW+L EIV+P +CR+V +P+STDS+SKV RLLYT
Sbjct: 717 ILNGVDPMSRSMEKLRTVDDVIDKTKPWQLAEIVEPDECRLVTLPDSTDSSSKVVRLLYT 776
Query: 777 NSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPE-NAEDV 835
NSG+GILAL SNG+QKLWKW R++QNPSGKATA PQHWQP++GLLM NDV N E+
Sbjct: 777 NSGVGILALGSNGIQKLWKWARSDQNPSGKATAGAVPQHWQPNSGLLMANDVSGVNLEEA 836
Query: 836 VPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGME 895
VPC+ALSKNDSYVMSA GGKVSLFNMM FKVMTTFMSPPPASTFLAFHPQDNNIIAIGME
Sbjct: 837 VPCIALSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGME 896
Query: 896 DSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSI 955
DSTI IYNVRVDEVK+KLKGHQK ITGLAFSTNLNILVSSG+DAQL W+ DTWEKRKS
Sbjct: 897 DSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAQLCVWSIDTWEKRKSF 956
Query: 956 AIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSA 1015
IQ+PAGK P G TRVQFHSDQ RLLV HETQLAIYD SKM+ IRQWVPQD +S+PIS A
Sbjct: 957 TIQIPAGKAPTGVTRVQFHSDQTRLLVVHETQLAIYDASKMDRIRQWVPQDAMSAPISYA 1016
Query: 1016 AYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPN-SQTVFPLVVTSHPQE 1074
AYSCNSQLI+A+F DG+IGVFDADSLRLRCRIAPSAY+S A N SQ+++PLVV +HP E
Sbjct: 1017 AYSCNSQLIFASFRDGNIGVFDADSLRLRCRIAPSAYLSPAVLNGSQSIYPLVVAAHPHE 1076
Query: 1075 PNQLAVGLTDGSVKVIEPSETERKWGVAVPVDNGTDNCRTVTSSATNNPTPEQFQR 1130
NQLAVGLTDGSVKV+EP ++ KWG + PVDNG N RT +SS T+N TP+Q QR
Sbjct: 1077 TNQLAVGLTDGSVKVMEPKASDGKWGTSPPVDNGILNGRTTSSSTTSNHTPDQLQR 1132
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1130 | ||||||
| TAIR|locus:2086770 | 1131 | TPR2 "TOPLESS-related 2" [Arab | 0.997 | 0.996 | 0.753 | 0.0 | |
| TAIR|locus:2036204 | 1131 | TPL "TOPLESS" [Arabidopsis tha | 0.979 | 0.978 | 0.621 | 0.0 | |
| TAIR|locus:2198888 | 1120 | TPR1 "TOPLESS-related 1" [Arab | 0.972 | 0.981 | 0.616 | 0.0 | |
| TAIR|locus:2040100 | 740 | AT2G25420 "AT2G25420" [Arabido | 0.327 | 0.5 | 0.356 | 3.4e-89 | |
| ASPGD|ASPL0000032162 | 1364 | AN8468 [Emericella nidulans (t | 0.5 | 0.414 | 0.227 | 1.4e-17 | |
| FB|FBgn0037094 | 630 | CG7611 [Drosophila melanogaste | 0.169 | 0.303 | 0.245 | 8.6e-15 | |
| DICTYBASE|DDB_G0278353 | 530 | smu1 "suppressor of mec-8 and | 0.239 | 0.511 | 0.242 | 6.2e-12 | |
| DICTYBASE|DDB_G0287273 | 335 | wdr5 "WD40 repeat-containing p | 0.173 | 0.585 | 0.283 | 6.1e-12 | |
| GENEDB_PFALCIPARUM|MAL8P1.43 | 324 | MAL8P1.43 "u5 snrnp-specific p | 0.101 | 0.354 | 0.276 | 7e-12 | |
| POMBASE|SPCC16A11.02 | 777 | utp13 "U3 snoRNP-associated pr | 0.181 | 0.263 | 0.25 | 5e-11 |
| TAIR|locus:2086770 TPR2 "TOPLESS-related 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4522 (1596.9 bits), Expect = 0., P = 0.
Identities = 855/1134 (75%), Positives = 965/1134 (85%)
Query: 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKESVH+LEQESGFFFN+KYFEEKALAGEWDE+EKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR+DRAKAVEIL KDLKVF+TFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLN 180
LENFRENEQLSKYGDT+SAR+IM ELKKLIEANPLFR+KL FPS K SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPVAAVAKPATYAPLGXXXXXXX 240
WQHQLCKNPRPNPDIKTLF+DHSCSP NGARA TPV LPVAAVA+P+ + PLG
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPVAAVARPSNFVPLGVHGGPFQ 240
Query: 241 XXXXXXXXXXXXXXXXXX-XPXXXXXXXXXXXXXLPVQPNQVSVLKHPRAPSNTLGMIDY 299
P P+QP+QV+ LKHPRAPSN+LG++DY
Sbjct: 241 SNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQVNELKHPRAPSNSLGLMDY 300
Query: 300 PSSDHEQLKKRLRASQSVDEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFH 359
S+DHEQL KRLR++Q+ +E TYP S SLDDLPR V T+ QGS V+SMDFHP H
Sbjct: 301 QSADHEQLMKRLRSAQTSNEVTYPAHSHPPA-SLDDLPRNVVSTIRQGSVVISMDFHPSH 359
Query: 360 HTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419
HTLL VGC GE+TLW+VG RE++V++PFKIW+M+ CS++ Q +IVK+ SISV+RVAWSP
Sbjct: 360 HTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRVAWSP 419
Query: 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL 479
DGN +GV+FTKHLIH+Y YQGS DL Q LEIDAHVG VNDLAF++PNKQ+C+VTCGDDKL
Sbjct: 420 DGNLLGVSFTKHLIHVYAYQGS-DLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDKL 478
Query: 480 IRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA 539
I+VWDLSG+KLF FEGHEAPVYS+CPHQKENI FIFSTA+DGKIKAWLYDNVGSRVDYDA
Sbjct: 479 IKVWDLSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSRVDYDA 538
Query: 540 PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTT 599
PG WCTTMLYSADGSRLFSCGTSKEGDS LVEWNESEGALKRTY+GFRKKSAGVVQFDTT
Sbjct: 539 PGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKKSAGVVQFDTT 598
Query: 600 RNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659
RNR LA GEDNQIKFW+MDN N+LT EAEGGLP+LPRLRFNK+GNLL VTTAD G KIL
Sbjct: 599 RNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADNGFKIL 658
Query: 660 ANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILN 719
AN DGLR LRA E R++E S+AS +MKV SA+ ++I+P + K E +D SPARP+ I N
Sbjct: 659 ANTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSISPAIGKIEHMDAGSPARPTPIPN 718
Query: 720 GADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSG 779
G ++ +R +EKPRNL+ + DK+KP ELTEIVDP QCR V MP+S DS SKVARLLYTNSG
Sbjct: 719 GIEAMSRTMEKPRNLDSV-DKSKPLELTEIVDPTQCRQVTMPDSKDSVSKVARLLYTNSG 777
Query: 780 IGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCV 839
+G+LAL SNGVQ+LWKW R EQNP+GKATA+V PQHWQP++GLLM NDVPEN E VPC+
Sbjct: 778 VGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSGLLMANDVPENPEGSVPCI 837
Query: 840 ALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTI 899
ALSKNDSYVMSA GGKVSLFNMM FKVMTTFM PPPASTFLAFHPQDNNIIAIGMEDS+I
Sbjct: 838 ALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSSI 897
Query: 900 QIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQL 959
IYNVRVDEVKTKLKGHQKHITGLAFST LNILVSSG+DAQL FW D+WEK+KS AIQL
Sbjct: 898 HIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFFWTADSWEKKKSSAIQL 957
Query: 960 PAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSC 1019
P GK PVG+TRVQFH+DQ++LLV+HETQLAIYD SKMECI +WVPQ+ LSSPI+SA+YSC
Sbjct: 958 PPGKAPVGDTRVQFHNDQIQLLVSHETQLAIYDASKMECIHKWVPQEALSSPITSASYSC 1017
Query: 1020 NSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLA 1079
NSQL+YA+F DG+I VFDA+SLRLRCRIAPSAYM Q +PNS +FP V+T+HPQEPNQLA
Sbjct: 1018 NSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQPTPNSAPIFPQVITAHPQEPNQLA 1077
Query: 1080 VGLTDGSVKVIEPSETERKWGVAVPVDN---GTDNCRTVTSSATNNPTPEQFQR 1130
VGL+DGSVKVIEPSE R+WGV V + GT+N R +SSA NN + +Q QR
Sbjct: 1078 VGLSDGSVKVIEPSELSRRWGVGVAAGSDKAGTENGRPSSSSAANNSSSDQIQR 1131
|
|
| TAIR|locus:2036204 TPL "TOPLESS" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3597 (1271.3 bits), Expect = 0., P = 0.
Identities = 712/1145 (62%), Positives = 851/1145 (74%)
Query: 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKE+VH+LEQESGFFFNMKYFE++ G WDE+EKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+HDR KAV+ILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLN 180
LENFRENEQLSKYGDT+SAR IMLVELKKLIEANPLFRDKL FP+L+ SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPV-AAVAKPATYAPLGXXXXXX 239
WQHQLCKNPRPNPDIKTLFVDHSC PPNGARAP+PV P+ + K + PLG
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPFQ 240
Query: 240 XXXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXLPVQPNQVSVLKHPRAPSNTLGMIDY 299
P P+ + LKHPR P T +DY
Sbjct: 241 PTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGG----PSIPAALKHPRTPP-TNASLDY 295
Query: 300 PSSDHEQLKKRLRASQSVDEATYPV---P---SQQATW------SLDDLPRAVACTMHQG 347
PS+D E + KR R DE V P S QA + DDLP+ VA T+ QG
Sbjct: 296 PSADSEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQG 355
Query: 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKD 407
SS +SMDFHP TLL+VG G+I LW+VG RERLV K FK+WD+S CSM LQAA+VK+
Sbjct: 356 SSPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKE 415
Query: 408 SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNK 467
+SV+RV WSPDG+ GVA+++H++ LY+Y G D+ Q LEIDAHVGGVND++FS PNK
Sbjct: 416 PVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNK 475
Query: 468 QLCIVTCGDDKLIRVWDLS-GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW 526
QLC++TCGDDK I+VWD + G K FEGHEAPVYSVCPH KENI FIFSTA+DGKIKAW
Sbjct: 476 QLCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAW 535
Query: 527 LYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGF 586
LYDN+GSRVDYDAPG WCTTM YSADG+RLFSCGTSK+G+S +VEWNESEGA+KRTY GF
Sbjct: 536 LYDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGF 595
Query: 587 RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNL 646
K+S GVVQFDTT+NR LAAG+D IKFWDMD V +LT+ + +GGL + PR+RFNKEG+L
Sbjct: 596 HKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSL 655
Query: 647 LVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERV 706
L V+ + IKI+AN+DGLR L E + E+S+ + +A T A
Sbjct: 656 LAVSGNENVIKIMANSDGLRLLHTFENISSESSKPAINSIAAAAAAAAT------SAGHA 709
Query: 707 DRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDS 766
DRS+ +NG DS KP E+ +DK+K W+LTE+ +P QCR + +PE+
Sbjct: 710 DRSANVVSIQGMNG-DSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLRV 768
Query: 767 ASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTN 826
A K++RL++TNSG ILAL SN + LWKW R E+N +GKATA++ PQ WQP++G+LMTN
Sbjct: 769 A-KISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGILMTN 827
Query: 827 DVPE-NAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQ 885
DV E N E+ VPC ALSKNDSYVMSA GGK+SLFNMM FK M TFM PPPA+TFLAFHPQ
Sbjct: 828 DVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ 887
Query: 886 DNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
DNNIIAIGM+DSTIQIYNVRVDEVK+KLKGH K ITGLAFS LN+LVSSG+DAQL WN
Sbjct: 888 DNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWN 947
Query: 946 TDTWEKRKSIAIQLPAGK---LPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQW 1002
TD WEK++S + LP G+ P +TRVQFH DQ LV HETQLAIY+ +K+EC++QW
Sbjct: 948 TDGWEKQRSKVLPLPQGRPNSAP-SDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQW 1006
Query: 1003 VPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQT 1062
++ L+ PI+ A +SC+SQL+YA+F D ++ VF + +LRLRCR+ PSAY+ + NS
Sbjct: 1007 AVRESLA-PITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSN- 1064
Query: 1063 VFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWGVAVPVDNGTDN----CRTVTSS 1118
V PLV+ +HPQEPN AVGL+DG V + EP E+E KWGVA P +NG+ + +V +S
Sbjct: 1065 VHPLVIAAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGAS 1124
Query: 1119 ATNNP 1123
A++ P
Sbjct: 1125 ASDQP 1129
|
|
| TAIR|locus:2198888 TPR1 "TOPLESS-related 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3576 (1263.9 bits), Expect = 0., P = 0.
Identities = 708/1148 (61%), Positives = 853/1148 (74%)
Query: 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKE+VH+LEQESGFFFNMKYFE++ G WDE+EKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDRHDR KAV+ILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLN 180
LENFRENEQLSKYGDT+SAR IMLVELKKLIEANPLFRDKL FP+L+TSRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPV-AAVAKPATYAPLGXXXXXX 239
WQHQLCKNPRPNPDIKTLFVDHSC PN ARAP+PV P+ ++ K + PLG
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPFQ 240
Query: 240 XXXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXLPVQPNQVSVLKHPRAPSNTLGMIDY 299
P +Q + LKHPR P + +DY
Sbjct: 241 PTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSIQ----AALKHPRTPPSN-SAVDY 295
Query: 300 PSSDHEQLKKRLRASQSVDEATYPV-------PSQ-----QATWSLDDLPRAVACTMHQG 347
PS D + + KR R DE + V P Q Q + DDLP+ VA T+ QG
Sbjct: 296 PSGDSDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHNQTFKAPDDLPKTVARTLSQG 355
Query: 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKD 407
SS +SMDFHP TLL+VG G+I LW+VG RERLV K FK+WD+S CSM LQAA+VK+
Sbjct: 356 SSPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKE 415
Query: 408 SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNK 467
+SV+RV WSPDG+ GVA+++H++ LY+Y G D+ Q LEIDAHVGGVND+AFS PNK
Sbjct: 416 PVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNK 475
Query: 468 QLCIVTCGDDKLIRVWDLS-GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW 526
QLC+ TCGDDK I+VWD + G K + FEGHEAPVYS+CPH KENI FIFSTA+DGKIKAW
Sbjct: 476 QLCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAW 535
Query: 527 LYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGF 586
LYDN+GSRVDY+APG WCTTM YSADG+RLFSCGTSK+G+S +VEWNESEGA+KRTY GF
Sbjct: 536 LYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGF 595
Query: 587 RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNL 646
K+S GVVQFDTT+NR LAAG+D IKFWDMD + +LT+ +A+GGL + PR+RFNKEG+L
Sbjct: 596 HKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSL 655
Query: 647 LVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERV 706
L V+ D IK++AN+DGLR L +E + E+S+ P ++ V
Sbjct: 656 LAVSANDNMIKVMANSDGLRLLHTVENLSSESSK-----------------PAINSIPMV 698
Query: 707 DRSSPARPSTI--LNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPEST 764
+R PA +I +NG DS KP E+ +DK+K W+LTE+ +P QCR + +PE+
Sbjct: 699 ER--PASVVSIPGMNG-DSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENM 755
Query: 765 DSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLM 824
+K++RL++TNSG ILAL SN + LWKW R ++N +GKATA++ PQ WQP++G+LM
Sbjct: 756 -RVTKISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGILM 814
Query: 825 TNDVPE-NAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFH 883
TNDV E N E+ VPC ALSKNDSYVMSA GGK+SLFNMM FK M TFM PPPA+TFLAFH
Sbjct: 815 TNDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFH 874
Query: 884 PQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIF 943
PQDNNIIAIGM+DSTIQIYNVRVDEVK+KLKGH K ITGLAFS LN+LVSSG+DAQL
Sbjct: 875 PQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCV 934
Query: 944 WNTDTWEKRKSIAIQLPAGKLP--VGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQ 1001
WNTD WEK+KS +Q+P G+ + +TRVQFH DQV LV HETQLAIY+ +K+EC++Q
Sbjct: 935 WNTDGWEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQ 994
Query: 1002 WVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQ 1061
W P ++PI+ A +SC+SQLIY +F D +I VF + +LRLRCR+ PSAY+ + NS
Sbjct: 995 W-PVRESAAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSNSN 1053
Query: 1062 TVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWGVAVPVDNGTDNCRTVTSS--A 1119
V PLV+ +HPQE N AVGL+DG V + EP E+E KWGVA P +NG+ + T T S A
Sbjct: 1054 -VHPLVIAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPENGSASAVTATPSVGA 1112
Query: 1120 TNNPTPEQ 1127
+ + P++
Sbjct: 1113 SASDQPQR 1120
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| TAIR|locus:2040100 AT2G25420 "AT2G25420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 597 (215.2 bits), Expect = 3.4e-89, Sum P(2) = 3.4e-89
Identities = 138/387 (35%), Positives = 216/387 (55%)
Query: 731 PRNLEDISDKTKPWEL--TEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSN 788
P +++ KT P + EI DP QC + +P+ S K+ARL Y+ SG ILAL +
Sbjct: 352 PSSMKFFFKKTVPRKKKPNEIKDPSQCNALVLPDCF-SEEKIARLTYSPSGDYILALAED 410
Query: 789 GVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYV 848
KLW W+ + QN K P+ QP +G M N++ + + C A+ SY+
Sbjct: 411 ATHKLWTWS-SSQNEFCKENVYPKPRLHQPQSGKTMENEMATSVQKSTSCFAVK--GSYL 467
Query: 849 MSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE 908
S GGK+++F++ NF+ + +F SP P +T+ F P D ++A+G++D +I I+ + +
Sbjct: 468 FSTSGGKIAVFDLKNFEKVASFGSPTPMATYFIFIPGD--LLAVGLDDGSIFIHCLSSRK 525
Query: 909 VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEK---RKSIAIQLPAGKLP 965
VK KL+GH + IT LAFS N+LVSS SD +L W+T +W K + S L
Sbjct: 526 VKEKLEGHDQKITCLAFSRCFNVLVSSDSDGKLCLWSTKSWVKLTSKNSTRKFCNRSNLE 585
Query: 966 VGE--TRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQL 1023
T +QF Q+ LLV H+ + +Y+ ++C QW+P D I+SA YS + ++
Sbjct: 586 STSLVTHIQFDPYQIELLVVHDGWIGLYEVRTLDCRLQWIP-DASDPAITSATYSSDGEI 644
Query: 1024 IYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPN-SQTVFPLVVTSHPQEPNQLAVGL 1082
IY F GSI + D+ + C+I +++ ++ N S V+P VV +HP PNQ++ GL
Sbjct: 645 IYVGFRCGSIKIVDSKTFMTLCQINLTSFTQLSTSNISLEVYPTVVAAHPSHPNQISAGL 704
Query: 1083 TDGSVKVIEPSETERKWGVAVPV-DNG 1108
++G V V++P + WG A P+ DNG
Sbjct: 705 SNGKVIVLQPLWSGG-WGEAAPLEDNG 730
|
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| ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 265 (98.3 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 142/623 (22%), Positives = 261/623 (41%)
Query: 389 KIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSL 448
KIWD + +LQ + S +V +A+SPDG + + I L+ + +L Q+
Sbjct: 775 KIWDPAT-GELLQT--LDGHSGTVESLAFSPDGKLLASGSYDNTIDLWD-SATGELLQTF 830
Query: 449 EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQ-FEGHEAPVYSVC--P 505
E H + +AF+ K+L + DD I++WDL+ +L Q + H V SV P
Sbjct: 831 E--GHPHSIWSVAFAPDGKELA--SASDDSTIKIWDLATGELQQTLDSHSQSVRSVAFSP 886
Query: 506 HQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEG 565
K + S+++D IK W + + W ++ +S DG +L S G+ K
Sbjct: 887 DGK----LLASSSLDSTIKVWNPATGELQQSLEGRSGWVKSVAFSPDGKKLAS-GSEK-- 939
Query: 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTS 625
+ + WN + G L +T G +S V F ++ ++ D IK W+ L
Sbjct: 940 -NTVKLWNPATGELLQTLEG-HSQSVRSVAFSPDGKQLASSSSDTTIKLWN-STTGELQQ 996
Query: 626 TEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKI--LANADGLRALRAIETRAYETSRAST 683
T +G + + F+ +G LV + D IK+ LA ++ ++L + + +
Sbjct: 997 T-FKGHDLWIRAVAFSPDGKHLVSGSDDNTIKLWDLATSELQQSLEDHSRSVHAVAFSPD 1055
Query: 684 EMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKP 743
+ ++ S++ +TI S + R+ + + G N D K
Sbjct: 1056 DKQLASSSLDSTIKLWDSATGELQRTLEGHSQGV-RSVTFSPDGKLLASNSYD--GTIKL 1112
Query: 744 WELTEIVDPLQCRVVAMPESTDSA--SKVARLLYTNSGIGILALWSNGVQKLWKW----- 796
W + LQ + + DS S + L + + LW + +L +
Sbjct: 1113 WN--PLTGELQQTLTGRSDWVDSVAFSPDGKQLASGYYDSTIKLWDSATGELLQTLEGHS 1170
Query: 797 NRTEQ---NPSGKATAAVAPQH----WQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVM 849
+R + +P GK A+ + W P+ G L+ + E V VA S + +
Sbjct: 1171 DRIQSVVFSPDGKLLASGSYDQTAKLWDPATGELL--QIFEGHSKWVESVAFSPDGKLLA 1228
Query: 850 SAGGGK-VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE 908
S+ G+ + L++ + +++ T P ++ +AF P N + ++ + D+ +I++ E
Sbjct: 1229 SSSYGETIKLWDPVTGELLQTLNDPDESAGSVAFSPDGNRLASVDIFDT--KIWDPATGE 1286
Query: 909 VKTKLKGHQKHI---TGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLP 965
+ LKGH K + TG S L+ + + I W +++ I + G L
Sbjct: 1287 LLQALKGHSKWVWSRTGAGISIFLDQWLCL--QEKRILWLPQSYQP---FCISVNDGVLV 1341
Query: 966 VGET--RVQFHSDQVRLLVNHET 986
+G + RV F L+ + ET
Sbjct: 1342 LGHSSGRVSFIQGPRFLIESEET 1364
|
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| FB|FBgn0037094 CG7611 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 124 (48.7 bits), Expect = 8.6e-15, Sum P(3) = 8.6e-15
Identities = 52/212 (24%), Positives = 95/212 (44%)
Query: 5 SRELVFLILQFLDEEKFKESVHRLEQESGFFF---NMKYFEEKALAGEWDEIEKYLSGFT 61
++E++ LI Q+L + +SV L ESG + + F E L G+W + + L
Sbjct: 97 NQEIIRLIGQYLHDVGLDKSVQTLMLESGCYLEHPSATKFREHVLMGDWSKADSDLKDLE 156
Query: 62 KVDDNRYSMKIF---FEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQL 118
+ DN I F + +QKYLE LD + A+ +L +L N +++
Sbjct: 157 PLIDNGKLATITEMKFILLEQKYLEHLDDGNPLDALHVLRSELTPLQ-HNITRVHQLSSY 215
Query: 119 LTLENFRENEQLSKY-GDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQ 177
+ ++ Q +K+ G +R +++ L+ + + + + RLRTL+ Q
Sbjct: 216 MMCSTNQDLYQRAKWEGKGILSRALVMERLQTFMPPSVMMSPR---------RLRTLLQQ 266
Query: 178 S--LNWQHQLCKNPRPNPDIKT--LFVDHSCS 205
+ L QH C + +++T L DH C+
Sbjct: 267 AVELQSQHCPCHDMAWETNLETVSLLTDHCCT 298
|
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| DICTYBASE|DDB_G0278353 smu1 "suppressor of mec-8 and unc-52-like protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 129 (50.5 bits), Expect = 6.2e-12, Sum P(2) = 6.2e-12
Identities = 74/305 (24%), Positives = 125/305 (40%)
Query: 363 LVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422
L+ G DG I +WD + +SK SN M+ D +I +A+S DG
Sbjct: 240 LLTGSMDGFIEVWDYNTGK--LSKSLAY--QSNDDFMMH-----DDAILC--IAFSKDGE 288
Query: 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRV 482
F+ + I ++ + L + E AH GV L FS + Q I++ D +++
Sbjct: 289 FLATGSLDNKIKVWQIKSGKCL-RKFE-PAHTNGVTCLQFSRNSTQ--ILSGSFDSSLKI 344
Query: 483 WDL-SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG 541
L SG+ L F GH++ V C + E+ + S + DGKIK W D S D
Sbjct: 345 HGLKSGKALKIFRGHQSFVNDCCFNHDEDR--VISCSSDGKIKIW--DAKSS----DCLQ 396
Query: 542 LWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE--------GALKRTYIGFRKKSAGV 593
T + + + S + L+ N S+ + +T+ K+ V
Sbjct: 397 TITPTSVVTVRDISIRSITILLKNPEFLLVCNSSQISIVSMKSQTISKTFTSENSKTFLV 456
Query: 594 VQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD 653
+N + A EDN + +D ++ ++L + + + + NLL T +D
Sbjct: 457 CTLSPLQNYLYAVDEDNILYTFDFNSGSLLNKFKIHD--QEVISISHHPTKNLLATTGSD 514
Query: 654 QGIKI 658
+KI
Sbjct: 515 CLLKI 519
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| DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 192 (72.6 bits), Expect = 6.1e-12, P = 6.1e-12
Identities = 60/212 (28%), Positives = 104/212 (49%)
Query: 411 SVSRVAWSPDGNFIGVAFTKHLIHLY-TYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQL 469
S+S V +SPDG ++ A I ++ Y G + ++LE H G++D+A+S +K +
Sbjct: 48 SISSVKFSPDGKWLASASADKTIKIWGAYDGKFE--RTLE--GHKEGISDIAWSQDSKLI 103
Query: 470 CIVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLY 528
C + DDK I++WD+ SG+ + +GH+ V+ V + + N+ I S + D ++ W
Sbjct: 104 C--SASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNL--IVSGSFDENVRIWDV 159
Query: 529 DNVGSRVDY-DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR 587
N G A T + ++ DG+ + S G S +G + W+ + G L T
Sbjct: 160 -NTGECTKMISAHSDPVTGVHFNRDGTLVVS-G-SYDGTVRI--WDTTTGQLLNTISTED 214
Query: 588 KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619
K V+F +LA DN ++ W +N
Sbjct: 215 GKEVSFVKFSPNGKFVLAGTLDNTLRLWSYNN 246
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| GENEDB_PFALCIPARUM|MAL8P1.43 MAL8P1.43 "u5 snrnp-specific protein, putative" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
|---|
Score = 121 (47.7 bits), Expect = 7.0e-12, Sum P(2) = 7.0e-12
Identities = 34/123 (27%), Positives = 58/123 (47%)
Query: 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFS 463
+++ +V + W D N+I A H + L+ + + L +S + H VN L
Sbjct: 75 VLRGHKNAVLQAKWLQDDNYICSASADHKLFLWDVECESKL-RSFK--GHDNIVNGLDII 131
Query: 464 YPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKI 523
N L V+C DD ++ WD+ + H+ P+ SVC +K F+F++ VD I
Sbjct: 132 --NHNL-FVSCSDDNTLKFWDIRSKWAVHIIKHDFPLLSVCSDKKGE--FLFTSCVDNTI 186
Query: 524 KAW 526
K +
Sbjct: 187 KKY 189
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| POMBASE|SPCC16A11.02 utp13 "U3 snoRNP-associated protein Utp13 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 147 (56.8 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
Identities = 54/216 (25%), Positives = 93/216 (43%)
Query: 403 AIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAF 462
+I KD V+ +A + D + AF L+ +Y + +S++ AH V +
Sbjct: 55 SIKKDEDDYVTALAITSDSKKLIAAFRSRLLTIYEIPSGRRI-KSMK--AHETPVITMTI 111
Query: 463 SYPNKQLCIVTCGDDKLIRVWDLSGRKL-FQFEGHEAPVYSVCPHQKENIHFIFSTAVDG 521
P L + T G + L++VWD++G + F GH + ++C + +N + S A D
Sbjct: 112 D-PTNTL-LATGGAEGLVKVWDIAGAYVTHSFRGHGGVISALCFGKHQNTWVLASGADDS 169
Query: 522 KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKR 581
+++ W ++ S ++ + + GS L S G+ D + WN + + R
Sbjct: 170 RVRLWDLNSSRSMAVFEGHSSVIRGLTFEPTGSFLLS-GSR---DKTVQVWNIKKRSAVR 225
Query: 582 TYIGFRKKSA-GVVQFDTTRNRILAAGEDNQIKFWD 616
T F A G V + AGE N I WD
Sbjct: 226 TIPVFHSVEAIGWVNGQPEEKILYTAGEGNLILAWD 261
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LRZ0 | TPR2_ARATH | No assigned EC number | 0.7751 | 0.9973 | 0.9964 | yes | no |
| Q84JM4 | TPR3_ARATH | No assigned EC number | 0.7093 | 0.9787 | 0.9981 | no | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | TPR2 | TPR2 (TOPLESS-RELATED 2); TOPLESS-RELATED 2 (TPR2); INVOLVED IN- primary shoot apical meristem specification; LOCATED IN- endomembrane system; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- WD40 repeat-like (InterPro-IPR011046), WD40 repeat, region (InterPro-IPR017986), WD40/YVTN repeat-like (InterPro-IPR015943), WD40 repeat (InterPro-IPR001680), CTLH, C-terminal to LisH motif (InterPro-IPR006595), LisH dimerisation motif (InterPro-IPR006594); BEST Arabidopsis thaliana protein match is- TPR3 (TOPLESS-RELATED 3) (TAIR-AT5G27030.1); Has [...] (1131 aa) | |||||||||
(Arabidopsis thaliana) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | HSP81-2 | HSP81-2 (HEAT SHOCK PROTEIN 81-2); ATP binding; a member of heat shock protein 90 (HSP90) gene [...] (699 aa) | • | 0.869 | |||||||
 | CHR4 | CHR4 (CHROMATIN REMODELING 4); ATP binding / DNA binding / chromatin binding / helicase/ nuclei [...] (2242 aa) | • | • | 0.787 | ||||||
 | LBD37 | LBD37 (LOB DOMAIN-CONTAINING PROTEIN 37); LOB DOMAIN-CONTAINING PROTEIN 37 (LBD37); INVOLVED IN [...] (250 aa) | • | 0.770 | |||||||
 | TOE2 | TOE2; DNA binding / transcription factor; TOE2; FUNCTIONS IN- transcription factor activity, DN [...] (485 aa) | • | 0.770 | |||||||
 | AT5G49300 | zinc finger (GATA type) family protein; zinc finger (GATA type) family protein; FUNCTIONS IN- t [...] (139 aa) | • | 0.770 | |||||||
 | ATAUX2-11 | ATAUX2-11 (AUXIN INDUCIBLE 2-11); DNA binding / transcription factor; Auxin inducible protein s [...] (186 aa) | • | 0.770 | |||||||
 | BZIP9 | BZIP9 (BASIC LEUCINE ZIPPER 9); DNA binding / protein heterodimerization/ transcription factor; [...] (277 aa) | • | 0.770 | |||||||
 | AT5G17300 | myb family transcription factor; myb family transcription factor; FUNCTIONS IN- transcription f [...] (387 aa) | • | 0.770 | |||||||
 | AGL15 | AGL15 (AGAMOUS-LIKE 15); DNA binding / transcription factor; AGL15 (AGAMOUS-Like 15) is a membe [...] (268 aa) | • | 0.770 | |||||||
 | OBF5 | OBF5 (OCS-ELEMENT BINDING FACTOR 5); DNA binding / protein binding / transcription factor; Enco [...] (330 aa) | • | 0.770 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1130 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-33 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-19 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-19 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-17 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-16 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-15 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-13 | |
| smart00668 | 58 | smart00668, CTLH, C-terminal to LisH motif | 4e-13 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-11 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-09 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-09 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 7e-09 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-07 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 4e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 5e-05 | |
| smart00667 | 34 | smart00667, LisH, Lissencephaly type-1-like homolo | 6e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-04 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 5e-04 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 3e-33
Identities = 77/317 (24%), Positives = 122/317 (38%), Gaps = 45/317 (14%)
Query: 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKD 407
V + F P LL G GDG I K+WD+ ++ +K
Sbjct: 10 GGVTCVAFSP-DGKLLATGSGDGTI----------------KVWDLETGELLRT---LKG 49
Query: 408 SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNK 467
+ V VA S DG ++ + I L+ + + + H V+ +AFS P+
Sbjct: 50 HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFS-PDG 105
Query: 468 QLCIVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW 526
++ + + DK I+VWD+ +G+ L GH V SV F+ S++ DG IK W
Sbjct: 106 RI-LSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG--TFVASSSQDGTIKLW 162
Query: 527 LYDNVGSRVDYDAPG--LWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYI 584
D + G ++ +S DG +L S D + W+ S G T
Sbjct: 163 --DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS----SDGTIKLWDLSTGKCLGTLR 216
Query: 585 GFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN---VNMLTSTEAEGGLPSLPRLRFN 641
G V F + + ED I+ WD+ V L+ L ++
Sbjct: 217 GHENGVNSVA-FSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVT-----SLAWS 270
Query: 642 KEGNLLVVTTADQGIKI 658
+G L +AD I+I
Sbjct: 271 PDGKRLASGSADGTIRI 287
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Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 90.9 bits (224), Expect = 6e-19
Identities = 76/311 (24%), Positives = 120/311 (38%), Gaps = 26/311 (8%)
Query: 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKD 407
S+ S+ F P LL+ G DG I LWD+ E+L+ ++
Sbjct: 66 DSITSIAFSP-DGELLLSGSSDGTIKLWDLDNGEKLI-----------------KSLEGL 107
Query: 408 SSISVSRVAW-SPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPN 466
SVS++A SPDGN I +A + + + S ++ H V LAFS P+
Sbjct: 108 HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFS-PD 166
Query: 467 KQLCIVTCGDDKLIRVWDLSGRKLFQ-FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKA 525
+L D I++WDL K GH PV S+ + S + DG I+
Sbjct: 167 GKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA-SGSSDGTIRL 225
Query: 526 WLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG 585
W + +S DGS L S D + W+ + +
Sbjct: 226 WDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGS----SDGTIRLWDLRSSSSLLRTLS 281
Query: 586 FRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGN 645
S V F + + D ++ WD++ +L+S +G + L F+ +G+
Sbjct: 282 GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGS 341
Query: 646 LLVVTTADQGI 656
LLV +D G
Sbjct: 342 LLVSGGSDDGT 352
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 8e-19
Identities = 39/226 (17%), Positives = 93/226 (41%), Gaps = 38/226 (16%)
Query: 833 EDVVPCVALSKNDSYVMSAGG-GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIA 891
V CVA S + + + G G + ++++ +++ T +A + +
Sbjct: 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLAS 68
Query: 892 IGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEK 951
D TI+++++ E L GH +++ +AFS + IL SS D + W+ +T +
Sbjct: 69 GSS-DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC 127
Query: 952 RKSIAIQLPAGKLPVGETRVQFHSDQVR-LLVNHETQLA----------IYDGSKMECIR 1000
++ + H+D V + + + ++D +C+
Sbjct: 128 LTTL----------------RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVA 171
Query: 1001 QWVPQDVLS---SPISSAAYSCNSQLIYATFTDGSIGVFDADSLRL 1043
L+ ++S A+S + + + ++ +DG+I ++D + +
Sbjct: 172 ------TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.8 bits (208), Expect = 6e-17
Identities = 69/316 (21%), Positives = 113/316 (35%), Gaps = 38/316 (12%)
Query: 331 WSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLV-----S 385
W L + + SV S+ F P L DG I LWD+ + L +
Sbjct: 139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHT 198
Query: 386 KPFKIWDMSNCSMMLQAAIVKDSSISVSRV-------------------AWSPDGNFIGV 426
P S +L A+ D +I + + ++SPDG+ +
Sbjct: 199 DPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLAS 258
Query: 427 AFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS 486
+ I L+ + + H V +AFS P+ +L + D +R+WDL
Sbjct: 259 GSSDGTIRLWDL--RSSSSLLRTLSGHSSSVLSVAFS-PDGKLLA-SGSSDGTVRLWDLE 314
Query: 487 GRKLFQ---FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLW 543
KL +GHE PV S+ + + + DG I+ W +
Sbjct: 315 TGKLLSSLTLKGHEGPVSSLSFS-PDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-N 372
Query: 544 CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRI 603
++ +S DG + S T D + W+ S G+L R G + F +
Sbjct: 373 VLSVSFSPDGRVVSSGST----DGTVRLWDLSTGSLLRNLDGH-TSRVTSLDFSPDGKSL 427
Query: 604 LAAGEDNQIKFWDMDN 619
+ DN I+ WD+
Sbjct: 428 ASGSSDNTIRLWDLKT 443
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 2e-16
Identities = 60/276 (21%), Positives = 115/276 (41%), Gaps = 26/276 (9%)
Query: 816 WQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGG-GKVSLFNMMNFKVMTTFMSPP 874
W G L+ + V VA S + +Y+ S + L+++ + + T
Sbjct: 36 WDLETGELLR--TLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHT 93
Query: 875 PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVS 934
+ +AF P D I++ D TI++++V + T L+GH + +AFS + + S
Sbjct: 94 SYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVAS 152
Query: 935 SGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDG 993
S D + W+ T + L V V F D +LL + + + ++D
Sbjct: 153 SSQDGTIKLWDLRTGKCVA----TLTGHTGEV--NSVAFSPDGEKLLSSSSDGTIKLWDL 206
Query: 994 SKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYM 1053
S +C+ + + ++S A+S + L+ + DG+I V+D + +
Sbjct: 207 STGKCLGTLRGHE---NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL------ 257
Query: 1054 SQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKV 1089
NS V + P + +LA G DG++++
Sbjct: 258 -SGHTNS--VT--SLAWSP-DGKRLASGSADGTIRI 287
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 1e-15
Identities = 52/215 (24%), Positives = 86/215 (40%), Gaps = 20/215 (9%)
Query: 449 EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS-GRKLFQFEGHEAPVYSV--CP 505
+ H GGV +AFS P+ +L + T D I+VWDL G L +GH PV V
Sbjct: 4 TLKGHTGGVTCVAFS-PDGKL-LATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA 61
Query: 506 HQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEG 565
++ S + D I+ W + + +++ +S DG L S
Sbjct: 62 DGT----YLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS----R 113
Query: 566 DSHLVEWNESEGALKRTYIGFRKKSAGV--VQFDTTRNRILAAGEDNQIKFWDMDNVNML 623
D + W+ G T G + V V F + ++ +D IK WD+
Sbjct: 114 DKTIKVWDVETGKCLTTLRG---HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR--TGK 168
Query: 624 TSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKI 658
G + + F+ +G L+ +++D IK+
Sbjct: 169 CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKL 203
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 1e-13
Identities = 47/218 (21%), Positives = 91/218 (41%), Gaps = 34/218 (15%)
Query: 833 EDVVPCVALSKNDSYVMSAGG-GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIA 891
V VA S + + S+ + ++++ K +TT +AF P D +A
Sbjct: 93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVA 151
Query: 892 IGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEK 951
+D TI+++++R + L GH + +AFS + L+SS SD + W+ T +
Sbjct: 152 SSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211
Query: 952 RKSIAIQLPAGKLPVGETRVQFHSDQVR-LLVNHETQLAI---YDGSKMECIRQW----- 1002
++ + H + V + + + L DG+ IR W
Sbjct: 212 LGTL----------------RGHENGVNSVAFSPDGYLLASGSEDGT----IRVWDLRTG 251
Query: 1003 VPQDVLS---SPISSAAYSCNSQLIYATFTDGSIGVFD 1037
LS + ++S A+S + + + + DG+I ++D
Sbjct: 252 ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 4e-13
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 34 FFFNMKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRHDRAK 92
F K E L G+WDE ++LS R S K+ FE+RKQK+LE + + +
Sbjct: 1 EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKLEE 58
|
Alpha-helical motif of unknown function. Length = 58 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.2 bits (165), Expect = 1e-11
Identities = 61/290 (21%), Positives = 120/290 (41%), Gaps = 40/290 (13%)
Query: 815 HWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGG----GKVSLFNMMN-FKVMTT 869
W NG + + + V +ALS D + G V L+++ K++ T
Sbjct: 91 LWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRT 150
Query: 870 FMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNL 929
+ T LAF P + + D TI+++++R + + L GH ++ LAFS +
Sbjct: 151 LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDG 210
Query: 930 NILVSSGS-DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQL 988
+L++SGS D + W+ T + + + + HSD V + + L
Sbjct: 211 GLLIASGSSDGTIRLWDLSTGKLLR---------------STLSGHSDSVVSSFSPDGSL 255
Query: 989 AIYDGSKMECIRQW---------VPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039
+ GS IR W SS + S A+S + +L+ + +DG++ ++D +
Sbjct: 256 -LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLE 314
Query: 1040 SLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKV 1089
+ +L + + S ++ P ++ G DG++++
Sbjct: 315 TGKLLSSLTLKGHEGPVS---------SLSFSPDGSLLVSGGSDDGTIRL 355
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-09
Identities = 40/175 (22%), Positives = 62/175 (35%), Gaps = 21/175 (12%)
Query: 490 LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW-LYDNVGSRVDY--DAPGLWCTT 546
+GH V V + + + DG IK W L R P
Sbjct: 2 RRTLKGHTGGVTCVAFSPDGK--LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDV-- 57
Query: 547 MLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGV--VQFDTTRNRIL 604
SADG+ L S + D + W+ G RT G V V F +
Sbjct: 58 -AASADGTYLASGSS----DKTIRLWDLETGECVRTLTGHTS---YVSSVAFSPDGRILS 109
Query: 605 AAGEDNQIKFWDMDNVNMLTSTEA-EGGLPSLPRLRFNKEGNLLVVTTADQGIKI 658
++ D IK WD++ LT+ + S + F+ +G + ++ D IK+
Sbjct: 110 SSSRDKTIKVWDVETGKCLTTLRGHTDWVNS---VAFSPDGTFVASSSQDGTIKL 161
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 4e-09
Identities = 39/178 (21%), Positives = 72/178 (40%), Gaps = 22/178 (12%)
Query: 913 LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQ 972
LKGH +T +AFS + +L + D + W+ +T E + L PV V
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR----TLKGHTGPV--RDVA 58
Query: 973 FHSDQVRLLVNHE-TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG 1031
+D L + ++D EC+R +S +SS A+S + +++ ++ D
Sbjct: 59 ASADGTYLASGSSDKTIRLWDLETGECVRTLTGH---TSYVSSVAFSPDGRILSSSSRDK 115
Query: 1032 SIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKV 1089
+I V+D ++ + T + V P +A DG++K+
Sbjct: 116 TIKVWDVET-----------GKCLTTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKL 161
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.3 bits (142), Expect = 7e-09
Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 4/143 (2%)
Query: 816 WQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGG--GKVSLFNMMNFKVMTTFMSP 873
W G L+++ + E V ++ S + S ++S G G + L+++ K + T
Sbjct: 311 WDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH 370
Query: 874 PPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILV 933
+ ++F P D +++ G D T++++++ + L GH +T L FS + L
Sbjct: 371 SNVLS-VSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLA 428
Query: 934 SSGSDAQLIFWNTDTWEKRKSIA 956
S SD + W+ T K S +
Sbjct: 429 SGSSDNTIRLWDLKTSLKSVSFS 451
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 39/154 (25%), Positives = 58/154 (37%), Gaps = 26/154 (16%)
Query: 331 WSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKI 390
W L T H G V S+ F P L+ DG I LWD+
Sbjct: 162 WDLRTGKCVATLTGHTGE-VNSVAFSP-DGEKLLSSSSDGTIKLWDL------------- 206
Query: 391 WDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEI 450
C L+ V+ VA+SPDG + I ++ + + + Q+L
Sbjct: 207 -STGKCLGTLRG-----HENGVNSVAFSPDGYLLASGSEDGTIRVWDLR-TGECVQTLS- 258
Query: 451 DAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484
H V LA+S P+ + + + D IR+WD
Sbjct: 259 -GHTNSVTSLAWS-PDGK-RLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.0 bits (110), Expect = 4e-05
Identities = 39/226 (17%), Positives = 82/226 (36%), Gaps = 18/226 (7%)
Query: 877 STFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSG 936
S + ++ + DS + + ++ L+GH+ IT +AFS + +L+S
Sbjct: 29 SLLSLGSSESGILLLALLSDSLVSLPDLSSLL----LRGHEDSITSIAFSPDGELLLSGS 84
Query: 937 SDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKM 996
SD + W+ D K I V + + LL + +
Sbjct: 85 SDGTIKLWDLDN--GEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLS 142
Query: 997 ECIRQWVPQDVLSSPISSAAYSCNSQ-LIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQ 1055
+ + S ++S A+S + + L + DG+I ++D + + +A
Sbjct: 143 TPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH----- 197
Query: 1056 ASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWGV 1101
T + P +A G +DG++++ + S +
Sbjct: 198 ------TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRST 237
|
Length = 466 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 4e-05
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 449 EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484
+ H G V +AFS P+ L + + DD +RVWD
Sbjct: 6 TLKGHTGPVTSVAFS-PDGNL-LASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 5e-05
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 908 EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
E+ LKGH +T +AFS + L S D + W+
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 6e-05
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 4 LSRELVFLILQFLDEEKFKESVHRLEQESGF 34
EL LIL++L ++E+ L++ESG
Sbjct: 2 SRSELNRLILEYLLRNGYEETAETLQKESGL 32
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 1e-04
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 908 EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
++ LKGH +T +AFS + N+L S D + W+
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 1e-04
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 449 EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484
+ H G V +AFS P+ + + + DD I++WD
Sbjct: 7 TLKGHTGPVTSVAFS-PDGKY-LASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 5e-04
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 11/90 (12%)
Query: 880 LAFHPQDNNIIAIGMEDSTIQIYNVR-----VDEVKTK---LKGHQKHITGLAFS-TNLN 930
L F+P + I+A G ED TI+++ + V E+K LKGH+K I+ + ++ N
Sbjct: 80 LQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYY 139
Query: 931 ILVSSGSDAQLIFWNTDTWEKRKSIAIQLP 960
I+ SSG D+ + W D ++++ I +P
Sbjct: 140 IMCSSGFDSFVNIW--DIENEKRAFQINMP 167
|
Length = 568 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1130 | |||
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.98 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.98 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.98 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.98 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.96 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.96 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.96 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.96 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.96 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.96 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.95 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.95 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.95 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.95 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.95 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.94 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.94 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| PTZ00420 | 568 | coronin; Provisional | 99.94 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.94 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| PTZ00421 | 493 | coronin; Provisional | 99.94 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.94 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.93 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.93 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.93 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.93 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.93 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.93 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.93 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.92 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.92 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| PTZ00420 | 568 | coronin; Provisional | 99.92 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.92 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.92 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.91 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.91 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.9 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.9 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.89 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.89 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.89 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.89 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.89 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.87 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.87 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.87 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.87 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.87 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.87 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.86 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.86 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.85 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.85 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.85 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.84 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.83 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.82 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.82 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.82 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.82 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.82 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.82 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.82 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.82 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.82 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.81 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.81 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.81 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.8 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.8 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.79 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.78 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.78 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.77 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.77 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.77 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.77 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.75 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.75 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.73 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.72 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.71 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.71 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.71 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.71 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.69 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.68 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.68 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.68 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.67 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.67 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.66 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.65 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.65 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.65 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.65 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.65 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.65 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.65 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.64 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.64 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.64 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.63 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.62 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.61 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.6 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.6 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.59 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.57 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.56 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.56 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.56 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 99.55 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.55 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.55 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.55 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.55 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.54 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.53 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.51 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.51 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.51 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.51 | |
| KOG2659 | 228 | consensus LisH motif-containing protein [Cytoskele | 99.5 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.5 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.49 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.49 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.49 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.48 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.48 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.48 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.46 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.46 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.45 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.44 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.44 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.43 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.42 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.41 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.41 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.4 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.38 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.38 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.37 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.37 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.36 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.35 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.33 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.33 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.32 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.31 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.31 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.31 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.3 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.29 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.29 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.28 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.28 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.27 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.27 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.25 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.24 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.23 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.19 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.15 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.13 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.13 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.09 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.05 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.03 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.01 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.98 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.97 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.97 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.95 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.95 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.92 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.9 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.89 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.85 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.83 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.82 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.81 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.8 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.8 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.78 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.77 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.76 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.75 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.72 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.69 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.69 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.65 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.65 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.64 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.64 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.64 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.63 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.59 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.58 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.58 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.57 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.57 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.57 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.57 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.56 | |
| KOG0396 | 389 | consensus Uncharacterized conserved protein [Funct | 98.54 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.53 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.5 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.44 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.42 | |
| PF10607 | 145 | CLTH: CTLH/CRA C-terminal to LisH motif domain; In | 98.41 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.41 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.38 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.37 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.35 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.35 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.33 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.33 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.33 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.32 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.31 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.29 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.26 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.16 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.13 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.13 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.08 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.06 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.06 | |
| PF08513 | 27 | LisH: LisH; InterPro: IPR013720 The LisH motif is | 98.06 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.06 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.04 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.04 | |
| smart00668 | 58 | CTLH C-terminal to LisH motif. Alpha-helical motif | 98.03 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.01 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.98 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.98 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.97 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.92 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.91 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.88 | |
| smart00667 | 34 | LisH Lissencephaly type-1-like homology motif. Alp | 97.86 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.79 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.75 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.75 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.75 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.74 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.73 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.68 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.67 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.65 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.65 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.64 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.55 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.5 | |
| KOG2817 | 394 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.47 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.45 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.41 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.41 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.36 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.34 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.33 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.3 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.29 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.29 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.26 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.26 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.2 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.17 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 97.14 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.13 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.08 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.95 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.93 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.92 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.9 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.87 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.85 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.8 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.79 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.76 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.73 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.62 | |
| PRK10115 | 686 | protease 2; Provisional | 96.54 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.41 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.41 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.37 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.34 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.2 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.16 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.09 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.0 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 95.99 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 95.93 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.92 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 95.88 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.87 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 95.82 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.82 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 95.8 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.8 | |
| PRK10115 | 686 | protease 2; Provisional | 95.75 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.75 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.73 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.51 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.44 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.42 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.41 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.36 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.92 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 94.89 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 94.75 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.58 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 94.46 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 94.38 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 94.3 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.28 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 94.27 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 94.21 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 94.08 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.9 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 93.64 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 93.39 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 93.36 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 93.14 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.03 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 92.93 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 92.93 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 92.55 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 92.47 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 92.25 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 92.22 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 92.06 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 91.93 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 91.84 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 91.66 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 91.65 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 91.63 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 91.6 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 91.52 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 91.45 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 91.18 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 91.02 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 90.68 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 90.55 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 90.51 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 90.46 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 90.34 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 90.16 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 90.06 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 89.97 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 89.92 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 89.91 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 89.69 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 89.5 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 89.31 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 89.17 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 89.12 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 89.11 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 88.94 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 88.87 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 88.69 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 88.61 | |
| PLN02153 | 341 | epithiospecifier protein | 88.51 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 87.87 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 87.53 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 87.06 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 86.27 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 86.25 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 85.88 | |
| PLN02193 | 470 | nitrile-specifier protein | 85.56 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 85.31 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 84.75 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 84.49 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 84.38 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 82.95 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 82.87 | |
| PLN02153 | 341 | epithiospecifier protein | 82.81 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 82.7 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 82.41 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 82.05 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 81.98 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 81.83 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 81.01 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 80.86 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 80.55 | |
| cd08044 | 133 | TAF5_NTD2 TAF5_NTD2 is the second conserved N-term | 80.53 | |
| PF04494 | 142 | TFIID_90kDa: WD40 associated region in TFIID subun | 80.52 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 80.39 |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-70 Score=545.06 Aligned_cols=491 Identities=22% Similarity=0.310 Sum_probs=404.6
Q ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHhcCCCcc---HHHHHHHHhccCHHHHHHHhccCCCcCCCccchhhhHHHHHhHH
Q 001184 5 SRELVFLILQFLDEEKFKESVHRLEQESGFFFN---MKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (1130)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 81 (1130)
+-|++|+++|+|+.+||.+|+.+||.|+|+.+. ...|.++++.|+|++++..+..+. .++.+....+.|++.||+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~-~~de~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRIS-FEDERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhcc-CcchhhhHHHHHHHHHHHH
Confidence 458999999999999999999999999999885 899999999999999999998773 3334556679999999999
Q ss_pred HHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccccccccccccCCCChhHHHHHHHHHHhhcccCcCccccc
Q 001184 82 LEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKL 161 (1130)
Q Consensus 82 lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~ 161 (1130)
||++..|....|+.+||+++.++. ++.+++++|+.-|..++....-+...-......|.+|+++|+++|||++|
T Consensus 96 LEf~k~~~is~al~~l~~~~~~lr-~~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~il----- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYLR-KNKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPNIL----- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhhh-hhHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHhhc-----
Confidence 999999999999999999999885 57899999988776654332222111112357799999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHhhccCCCCCCCcccccccccCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCC
Q 001184 162 VFPSLKTSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPVAAVAKPATYAPLGAHAVPFPP 241 (1130)
Q Consensus 162 ~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~sl~~~h~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 241 (1130)
+|++||++||+||+++|++.|.|||. .+..|||.||.|++.++ |+ .+.++|.+|++
T Consensus 170 ----lP~rRLehLl~qAv~~Q~d~cvyhns-ldsvsll~Dh~c~~~qi-----p~----------qt~qil~~htd---- 225 (519)
T KOG0293|consen 170 ----LPKRRLEHLLEQAVKYQRDSCVYHNS-LDSVSLLSDHFCGRLQI-----PS----------QTWQILQDHTD---- 225 (519)
T ss_pred ----CChHHHHHHHHHHHHHHHhHhHHhcc-cchhhhhhhcccCcccC-----Cc----------hhhhhHhhCCC----
Confidence 99999999999999999999999995 66699999999999773 33 44555665544
Q ss_pred CccccCchhhhhccccCCCCCcccccccccCCCCCCCCccccccCCCCCCCCCccccCCCCChHHHHHhhcccCCccccc
Q 001184 242 AVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDYPSSDHEQLKKRLRASQSVDEAT 321 (1130)
Q Consensus 242 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1130)
T Consensus 226 -------------------------------------------------------------------------------- 225 (519)
T KOG0293|consen 226 -------------------------------------------------------------------------------- 225 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCcccccCCcccceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeecccccccee
Q 001184 322 YPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQ 401 (1130)
Q Consensus 322 ~s~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1130)
+|+-+.||++|+| ||+++.|.+..||++.....+. .
T Consensus 226 ---------------------------EVWfl~FS~nGky-LAsaSkD~Taiiw~v~~d~~~k----------------l 261 (519)
T KOG0293|consen 226 ---------------------------EVWFLQFSHNGKY-LASASKDSTAIIWIVVYDVHFK----------------L 261 (519)
T ss_pred ---------------------------cEEEEEEcCCCee-EeeccCCceEEEEEEecCccee----------------e
Confidence 4555555666664 6677777777777765433321 1
Q ss_pred eeeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001184 402 AAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR 481 (1130)
Q Consensus 402 ~~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~ 481 (1130)
.+++.+|..+|..+.||||.++|++|+.|..+++||+.+|...... -.+|...+.+++|.|||. .+++|+.|+++.
T Consensus 262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y--~~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLY--PSGLGFSVSSCAWCPDGF--RFVTGSPDRTII 337 (519)
T ss_pred eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhc--ccCcCCCcceeEEccCCc--eeEecCCCCcEE
Confidence 1257899999999999999999999999999999999999876532 134668999999999999 799999999999
Q ss_pred EEecCCCeeeEecCCC-cCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEee
Q 001184 482 VWDLSGRKLFQFEGHE-APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCG 560 (1130)
Q Consensus 482 iwd~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1130)
.||.+|..+...++-. ..|.++++. .||+++++.+.|..|++++.++...+.. .....+|+++..+.|++++++.-
T Consensus 338 ~wdlDgn~~~~W~gvr~~~v~dlait--~Dgk~vl~v~~d~~i~l~~~e~~~dr~l-ise~~~its~~iS~d~k~~LvnL 414 (519)
T KOG0293|consen 338 MWDLDGNILGNWEGVRDPKVHDLAIT--YDGKYVLLVTVDKKIRLYNREARVDRGL-ISEEQPITSFSISKDGKLALVNL 414 (519)
T ss_pred EecCCcchhhcccccccceeEEEEEc--CCCcEEEEEecccceeeechhhhhhhcc-ccccCceeEEEEcCCCcEEEEEc
Confidence 9999999988888754 468888884 5778999999999999999887665543 33456799999999999998876
Q ss_pred ecCCCCcEEEEeeCCCCceeEEEecccCcee-EEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceE
Q 001184 561 TSKEGDSHLVEWNESEGALKRTYIGFRKKSA-GVVQFDT-TRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1130)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v-~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v 638 (1130)
. +..+++||++..+.++.+.||..+.. -.-||.. +..++++|++|+.|+||+..+|+++..+.+|.. .|+++
T Consensus 415 ~----~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vNcV 488 (519)
T KOG0293|consen 415 Q----DQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVNCV 488 (519)
T ss_pred c----cCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eeeEE
Confidence 5 78899999999999999999887532 2244543 447999999999999999999999999998765 89999
Q ss_pred EEcC-CCCEEEEEeCCCcEEEEEcCC
Q 001184 639 RFNK-EGNLLVVTTADQGIKILANAD 663 (1130)
Q Consensus 639 ~~s~-~~~~l~~~~~dg~i~iw~~~~ 663 (1130)
+|+| +..++|++++||+||||....
T Consensus 489 swNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 489 SWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ecCCCCHHHhhccCCCCeEEEecCCc
Confidence 9999 667899999999999998754
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-64 Score=485.41 Aligned_cols=490 Identities=20% Similarity=0.293 Sum_probs=404.5
Q ss_pred chHHHHHHHHHhhhhccHHHHHHHHHHhcCCCcc----HHHHHHHHhccCHHHHHHHhccCCCcCCCccchhhhHHHHHh
Q 001184 4 LSRELVFLILQFLDEEKFKESVHRLEQESGFFFN----MKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFEIRKQ 79 (1130)
Q Consensus 4 ~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~ 79 (1130)
-+.+|||||+|||+|+.+.++.++||+|++++|| ++-|-+.|.+|+||.+++.+++| +++.+.+..+|||
T Consensus 6 essdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL------KLP~kkL~dLYEq 79 (508)
T KOG0275|consen 6 ESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL------KLPDKKLIDLYEQ 79 (508)
T ss_pred ecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc------cCchhHHHHHHHH
Confidence 4568999999999999999999999999999998 78999999999999999999998 5555678999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhh--cccccccCHHHHHHHHHhhcccccccccccccCCCChhHHHHHHHHHHhhcccCcCc
Q 001184 80 KYLEALDRHDRAKAVEILVKD--LKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLF 157 (1130)
Q Consensus 80 ~~lell~~~~~~~a~~~l~~~--~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~ 157 (1130)
..|||+|.+|...|..+||+. +..+.+.+||||.+|..||..+.++.++.+.+ .+.+..|..+.+.|...+.-
T Consensus 80 ivlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d-ssKEkrRa~IAQ~ls~EV~V---- 154 (508)
T KOG0275|consen 80 IVLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD-SSKEKRRAVIAQALSGEVHV---- 154 (508)
T ss_pred HHHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc-chHHHHHHHHHHHhcCceEE----
Confidence 999999999999999999974 44456668999999999999999998888763 22344455666666655544
Q ss_pred cccccCCCCChHHHHHHHHHHHHHHHhhccCCCCCCCcccccccccCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCC
Q 001184 158 RDKLVFPSLKTSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPVAAVAKPATYAPLGAHAV 237 (1130)
Q Consensus 158 ~~~~~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~sl~~~h~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (1130)
+||+||+.||+||++||.++.+.| ++.++ |
T Consensus 155 --------VppSRLlaLlGQaLKWQqHQGLLP-----------------------------------PGt~i-------D 184 (508)
T KOG0275|consen 155 --------VPPSRLLALLGQALKWQQHQGLLP-----------------------------------PGTTI-------D 184 (508)
T ss_pred --------cChHHHHHHHHHHhhhHhhcCCCC-----------------------------------CCcee-------e
Confidence 999999999999999999986543 33444 7
Q ss_pred CCCCCccccCchhhhhccccCCCCCcccccccccCCCCCCCCccccccCCCCCCCCCccccCCCCChHHHHHhhcccCCc
Q 001184 238 PFPPAVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDYPSSDHEQLKKRLRASQSV 317 (1130)
Q Consensus 238 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (1130)
+|++..+..... ...++.++...
T Consensus 185 LFRGkAA~K~~~--------------------------------------------------Ee~~Pt~l~r~------- 207 (508)
T KOG0275|consen 185 LFRGKAAMKDQE--------------------------------------------------EERYPTQLARS------- 207 (508)
T ss_pred eccchhhhhhhH--------------------------------------------------hhhchHHhhhh-------
Confidence 787754332200 00011111111
Q ss_pred ccccccCCCCCcccccCCcccceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccc
Q 001184 318 DEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCS 397 (1130)
Q Consensus 318 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 397 (1130)
+ .++.+..+.|..|||||++ |++|+.||.|.+||+.+|+..+...++.
T Consensus 208 --I----------------------KFg~KSh~EcA~FSPDgqy-LvsgSvDGFiEVWny~~GKlrKDLkYQA------- 255 (508)
T KOG0275|consen 208 --I----------------------KFGQKSHVECARFSPDGQY-LVSGSVDGFIEVWNYTTGKLRKDLKYQA------- 255 (508)
T ss_pred --e----------------------ecccccchhheeeCCCCce-Eeeccccceeeeehhccchhhhhhhhhh-------
Confidence 1 2457788999999999995 9999999999999999999876433221
Q ss_pred cceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCC
Q 001184 398 MMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD 477 (1130)
Q Consensus 398 ~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d 477 (1130)
..-+.-+..+|.|+.||.|...||+|+.||.|++|.+.+|.|++.. -..|+..|+++.||.|+. .+++++.|
T Consensus 256 ----qd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrF--drAHtkGvt~l~FSrD~S--qiLS~sfD 327 (508)
T KOG0275|consen 256 ----QDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRF--DRAHTKGVTCLSFSRDNS--QILSASFD 327 (508)
T ss_pred ----hcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHh--hhhhccCeeEEEEccCcc--hhhccccc
Confidence 1135567889999999999999999999999999999999999843 138999999999999999 68999999
Q ss_pred CcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCC--ccEEEEEEecC-C
Q 001184 478 KLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG--LWCTTMLYSAD-G 553 (1130)
Q Consensus 478 ~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--~~v~~~~~s~~-~ 553 (1130)
.+++|.- .+|++++.|+||+..|+...|. ++|..+++++.||+|++|+..+.++..++...+ .+|.++..-|. -
T Consensus 328 ~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft--~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnp 405 (508)
T KOG0275|consen 328 QTVRIHGLKSGKCLKEFRGHSSYVNEATFT--DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNP 405 (508)
T ss_pred ceEEEeccccchhHHHhcCccccccceEEc--CCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCC
Confidence 9999999 9999999999999999999884 677899999999999999999999888776543 47888887774 4
Q ss_pred CeEEEeeecCCCCcEEEEeeCCCCceeEEEeccc--CceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCC
Q 001184 554 SRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR--KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGG 631 (1130)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 631 (1130)
..+++|.. .++|++.++. |+.++.+.... ++..-+++.+|.|.++++.++|+.++.|.+.+|.+..++..|..
T Consensus 406 eh~iVCNr----sntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk 480 (508)
T KOG0275|consen 406 EHFIVCNR----SNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK 480 (508)
T ss_pred ceEEEEcC----CCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc
Confidence 56777754 7889999865 88888886432 23456678999999999999999999999999999999988765
Q ss_pred CCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001184 632 LPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1130)
Q Consensus 632 ~~~i~~v~~s~~~~~l~~~~~dg~i~iw~ 660 (1130)
.+..++.+|..+.+|+-+.||.+++|.
T Consensus 481 --dvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 481 --DVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred --cccccccCcccchhhhhcccchhhhcC
Confidence 688999999999999999999999995
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-56 Score=476.41 Aligned_cols=575 Identities=19% Similarity=0.253 Sum_probs=477.9
Q ss_pred EEEecCCCeEEEEEeCcCeEEEEeCCCCcee-ecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCC
Q 001184 353 MDFHPFHHTLLVVGCGDGEITLWDVGLRERL-VSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKH 431 (1130)
Q Consensus 353 v~fspdg~~llasg~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~ 431 (1130)
++||++|+ +|++.+.| .|.+-|+.+++.. .. .-......+++++.+||+++|++++..+
T Consensus 25 ~~~s~nG~-~L~t~~~d-~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQ-HLYTACGD-RVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCC-EEEEecCc-eEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence 89999999 58887655 7899999998873 21 1234567899999999999999999999
Q ss_pred eEEEEEecCCccceeeeeeec-CCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccC
Q 001184 432 LIHLYTYQGSNDLCQSLEIDA-HVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKE 509 (1130)
Q Consensus 432 ~i~vwd~~~~~~~~~~~~~~~-h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~ 509 (1130)
.+++|++.+|+.++ .+.. |.++|.-++|.|.+. ++++|+.|+.+++|| ..+.+.+.|+||.+.|.++.|+|..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998776 4555 999999999999997 899999999999999 8889999999999999999999999
Q ss_pred CccEEEEEecCCcEEEEEccCCcc-eeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccC
Q 001184 510 NIHFIFSTAVDGKIKAWLYDNVGS-RVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRK 588 (1130)
Q Consensus 510 ~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~ 588 (1130)
+..+|++|..|+++++||++.... ...+..|...|++++|++|+..+++++. |..+.+||+.+.+..++++-..
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence 888999999999999999986554 6677889999999999999999999987 8899999998877777766432
Q ss_pred ceeEEEEEcCC-----CCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001184 589 KSAGVVQFDTT-----RNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANAD 663 (1130)
Q Consensus 589 ~~v~~~~~~~~-----~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 663 (1130)
.+.++.+-++ +.+++++|.+|.+++||.++++++........ ..+..+...+....++..+.|..+.++|.++
T Consensus 235 -~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~-~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~ 312 (775)
T KOG0319|consen 235 -SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDS-EEIDHLLAIESMSQLLLVTAEQNLFLYDEDE 312 (775)
T ss_pred -heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCc-hhhhcceeccccCceEEEEccceEEEEEccc
Confidence 4666667666 67999999999999999999988776654432 2366676666666777788899999999887
Q ss_pred CchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccc
Q 001184 664 GLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKP 743 (1130)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 743 (1130)
. +..+.+.|...++... + ...+....+++++..+.+++
T Consensus 313 l-~i~k~ivG~ndEI~Dm----------------------------------~-------~lG~e~~~laVATNs~~lr~ 350 (775)
T KOG0319|consen 313 L-TIVKQIVGYNDEILDM----------------------------------K-------FLGPEESHLAVATNSPELRL 350 (775)
T ss_pred c-EEehhhcCCchhheee----------------------------------e-------ecCCccceEEEEeCCCceEE
Confidence 7 6777777777766531 1 11234567888888899999
Q ss_pred eeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcc
Q 001184 744 WELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLL 823 (1130)
Q Consensus 744 w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 823 (1130)
|++.+.. |. -+ .+|...|.++....+|..+++++.|.++++|+++.+... .
T Consensus 351 y~~~~~~----c~--ii---~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~--------------------~ 401 (775)
T KOG0319|consen 351 YTLPTSY----CQ--II---PGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSK--------------------S 401 (775)
T ss_pred EecCCCc----eE--EE---eCchhheeeeeecccCcEEEEecCCceEEEEEecCCcch--------------------h
Confidence 9766532 33 22 459999999998888999999999999999987332111 0
Q ss_pred eeccCCCCCCCceeEEEEecCCC-EEEEEe-CCeEEEEECCCcee---------EEEEeCCCCCeEEEEEeCCCCcEEEE
Q 001184 824 MTNDVPENAEDVVPCVALSKNDS-YVMSAG-GGKVSLFNMMNFKV---------MTTFMSPPPASTFLAFHPQDNNIIAI 892 (1130)
Q Consensus 824 ~~~~~~~~~~~~i~~l~~s~dg~-~la~~~-dg~i~iwd~~~~~~---------~~~~~~~~~~i~~l~~sp~~~~~las 892 (1130)
.......+|...|.+++++..+. ++++++ |+++++|++...+. ..+...|...|++++++| +.+++|+
T Consensus 402 ~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT 480 (775)
T KOG0319|consen 402 LCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIAT 480 (775)
T ss_pred hhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEe
Confidence 11111237999999999987664 677777 99999999876211 113347999999999999 8999999
Q ss_pred EeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEE
Q 001184 893 GMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQ 972 (1130)
Q Consensus 893 g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 972 (1130)
|+.|++.+||+++......+|.||...|+++.|+|..+.|+|+|.|++|+||.+++..+ .+...+|. ..|..+.
T Consensus 481 ~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSC-----lkT~eGH~-~aVlra~ 554 (775)
T KOG0319|consen 481 GSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSC-----LKTFEGHT-SAVLRAS 554 (775)
T ss_pred cccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecccee-----eeeecCcc-ceeEeee
Confidence 99999999999999999999999999999999999999999999999999999999665 34444443 7899999
Q ss_pred EcCCCcEEEE-EcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 001184 973 FHSDQVRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS 1040 (1130)
Q Consensus 973 ~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~ 1040 (1130)
|-.+|..|++ +.||-+++|++++.+|+..+..| +..|++++.++++.+++||+.||.|.+|.=-+
T Consensus 555 F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H---~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 555 FIRNGKQLISAGADGLIKLWNIKTNECEMTLDAH---NDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred eeeCCcEEEeccCCCcEEEEeccchhhhhhhhhc---cceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 9999999998 68999999999999999999877 89999999999999999999999999995433
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-53 Score=451.21 Aligned_cols=574 Identities=12% Similarity=0.207 Sum_probs=462.1
Q ss_pred ccccCCCCCcc-------cccCCcccce-eeec--cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccce
Q 001184 320 ATYPVPSQQAT-------WSLDDLPRAV-ACTM--HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFK 389 (1130)
Q Consensus 320 ~~~s~~~~~~~-------~~~~~~~~~~-~~~~--~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~ 389 (1130)
++++++|+... ...|..+... +... +..+.+++++.+||+. .|++++..+.+++|++.+|+.++
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~-~L~~a~rs~llrv~~L~tgk~ir----- 98 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEE-VLVTASRSQLLRVWSLPTGKLIR----- 98 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCcc-EEEEeeccceEEEEEcccchHhH-----
Confidence 77778776332 2233334444 3333 3667999999999998 58999999999999999998876
Q ss_pred eeeccccccceeeeeecC-CCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCc
Q 001184 390 IWDMSNCSMMLQAAIVKD-SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQ 468 (1130)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~-h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~ 468 (1130)
.++. |+++|.-++|+|.|..||+|+.|+.++|||+..+.+.. .+.||.+.|.++.|.|+-.+
T Consensus 99 --------------swKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~ 161 (775)
T KOG0319|consen 99 --------------SWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNR 161 (775)
T ss_pred --------------hHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccch
Confidence 3555 99999999999999999999999999999999987665 78999999999999999876
Q ss_pred eEEEEEcCCCcEEEEe-c-CCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEE
Q 001184 469 LCIVTCGDDKLIRVWD-L-SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTT 546 (1130)
Q Consensus 469 l~l~s~s~d~~v~iwd-~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 546 (1130)
.+|++|+.|+++++|| . ...++..+..|...|+++++.+ |+..+++++.|..+.+||+...+....+... ..+.+
T Consensus 162 ~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~--d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y-e~~E~ 238 (775)
T KOG0319|consen 162 WLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSE--DSLELLSVGRDKVIIVWDLVQYKKLKTLPLY-ESLES 238 (775)
T ss_pred hheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeecc--CCceEEEeccCcEEEEeehhhhhhhheechh-hheee
Confidence 6789999999999999 5 3345889999999999999965 4678999999999999999665555544432 34777
Q ss_pred EEEecC-----CCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 001184 547 MLYSAD-----GSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN 621 (1130)
Q Consensus 547 ~~~s~~-----~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 621 (1130)
+.+-++ |.+++++|. +|.++.||.+++++...........+..+...+..+.++....|..+.++|.++.+
T Consensus 239 vv~l~~~~~~~~~~~~TaG~----~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~ 314 (775)
T KOG0319|consen 239 VVRLREELGGKGEYIITAGG----SGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELT 314 (775)
T ss_pred EEEechhcCCcceEEEEecC----CceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccE
Confidence 888777 778999885 89999999999988766554333345555555666778888889999999999999
Q ss_pred eeEEEeccCCCCCcceEEE-cCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeecccccc
Q 001184 622 MLTSTEAEGGLPSLPRLRF-NKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVL 700 (1130)
Q Consensus 622 ~~~~~~~~~~~~~i~~v~~-s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~ 700 (1130)
+...+-+... .|..+.| .|+.++||+++..+.+|+|++.+.. + ..+.+|...+.. +.
T Consensus 315 i~k~ivG~nd--EI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~-c-~ii~GH~e~vlS---------------L~--- 372 (775)
T KOG0319|consen 315 IVKQIVGYND--EILDMKFLGPEESHLAVATNSPELRLYTLPTSY-C-QIIPGHTEAVLS---------------LD--- 372 (775)
T ss_pred EehhhcCCch--hheeeeecCCccceEEEEeCCCceEEEecCCCc-e-EEEeCchhheee---------------ee---
Confidence 8888776544 6888776 5688999999999999999887652 2 267777765542 11
Q ss_pred ccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCC
Q 001184 701 SKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGI 780 (1130)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~ 780 (1130)
....+-.+++++.|.++++|+++.. ......+....+|.+.|.+++++..+.
T Consensus 373 ------------------------~~~~g~llat~sKD~svilWr~~~~----~~~~~~~a~~~gH~~svgava~~~~~a 424 (775)
T KOG0319|consen 373 ------------------------VWSSGDLLATGSKDKSVILWRLNNN----CSKSLCVAQANGHTNSVGAVAGSKLGA 424 (775)
T ss_pred ------------------------ecccCcEEEEecCCceEEEEEecCC----cchhhhhhhhcccccccceeeecccCc
Confidence 1123456889999999999999442 223333444577999999999987664
Q ss_pred -eEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEE
Q 001184 781 -GILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSL 858 (1130)
Q Consensus 781 -~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~i 858 (1130)
.+++++.|+++++|++...+...... +.. .......|...|.|++++|+.+++|+|+ |.+.+|
T Consensus 425 sffvsvS~D~tlK~W~l~~s~~~~~~~--------~~~-------~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKi 489 (775)
T KOG0319|consen 425 SFFVSVSQDCTLKLWDLPKSKETAFPI--------VLT-------CRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKI 489 (775)
T ss_pred cEEEEecCCceEEEecCCCcccccccc--------eeh-------hhHHHHhhcccccceEecCCCceEEecccccceee
Confidence 57778889999999987632221100 000 0011126999999999999999999999 999999
Q ss_pred EECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCC
Q 001184 859 FNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSD 938 (1130)
Q Consensus 859 wd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D 938 (1130)
|+++.++...++.+|...+.++.|+| ..+++|+++.|++|+||.+.+..++++|.||+..|..+.|-.+|+.|+|++.|
T Consensus 490 W~le~~~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~ad 568 (775)
T KOG0319|consen 490 WDLEQLRLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGAD 568 (775)
T ss_pred ecccCceEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCC
Confidence 99999999999999999999999999 88999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE-EcCCcEEEEECCC
Q 001184 939 AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGSK 995 (1130)
Q Consensus 939 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~ 995 (1130)
|.|++|+++++++.... .. |.+.|.+++.++.+.++++ +.|+.|.+|.-.+
T Consensus 569 GliKlWnikt~eC~~tl-----D~-H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 569 GLIKLWNIKTNECEMTL-----DA-HNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred CcEEEEeccchhhhhhh-----hh-ccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 99999999998775443 22 3488999999999998887 6799999997654
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-50 Score=410.91 Aligned_cols=568 Identities=14% Similarity=0.208 Sum_probs=439.4
Q ss_pred EEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCe
Q 001184 353 MDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHL 432 (1130)
Q Consensus 353 v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~ 432 (1130)
+.-.|-|+.+|.+.+ ..|.+-++++..... ++.+|...++-..|||.|-|+|+|...|+
T Consensus 24 ig~dpkgd~ilY~nG--ksv~ir~i~~~~~~~-------------------iYtEH~~~vtVAkySPsG~yiASGD~sG~ 82 (603)
T KOG0318|consen 24 IGGDPKGDNILYTNG--KSVIIRNIDNPASVD-------------------IYTEHAHQVTVAKYSPSGFYIASGDVSGK 82 (603)
T ss_pred eccCCCCCeEEEeCC--CEEEEEECCCcccee-------------------eeccccceeEEEEeCCCceEEeecCCcCc
Confidence 344677777777653 478888888766543 68899999999999999999999999999
Q ss_pred EEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEc--CCC--cEEEEecCCCeeeEecCCCcCEEEEeeccc
Q 001184 433 IHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG--DDK--LIRVWDLSGRKLFQFEGHEAPVYSVCPHQK 508 (1130)
Q Consensus 433 i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s--~d~--~v~iwd~~~~~~~~~~~h~~~v~~~~~~~~ 508 (1130)
|||||....+.+ ...+++.-.++|.+|+|+.|+++ |+..+ .++ .+.+|| +|..+-.+.||...|+++.|-|+
T Consensus 83 vRIWdtt~~~hi-LKnef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~D-SG~SvGei~GhSr~ins~~~Kps 158 (603)
T KOG0318|consen 83 VRIWDTTQKEHI-LKNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWD-SGNSVGEITGHSRRINSVDFKPS 158 (603)
T ss_pred EEEEeccCccee-eeeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEec-CCCccceeeccceeEeeeeccCC
Confidence 999998764432 33467788899999999999995 44443 333 455565 67778899999999999999876
Q ss_pred CCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEe---c
Q 001184 509 ENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYI---G 585 (1130)
Q Consensus 509 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~---~ 585 (1130)
.. -.++++++|++|.+|+-...+-...+..|..-|+++.|+|||.++++++. |+++++||-.+|+.+..+. +
T Consensus 159 RP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~a 233 (603)
T KOG0318|consen 159 RP-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSDA 233 (603)
T ss_pred Cc-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCCC
Confidence 54 57999999999999976655556677778889999999999999999987 9999999999999999988 6
Q ss_pred ccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCC-CCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 586 FRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGL-PSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 586 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
|.+ .|.+++|+||+..+++++.|.+++|||+.+.+++.++...... ..-..+.|. ...|++.+.+|+|.+++....
T Consensus 234 HkG-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~ 310 (603)
T KOG0318|consen 234 HKG-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP 310 (603)
T ss_pred ccc-cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC
Confidence 555 8999999999999999999999999999999999998765431 122344554 557899999999999987766
Q ss_pred chhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccce
Q 001184 665 LRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPW 744 (1130)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w 744 (1130)
. ..+.+
T Consensus 311 ~-~~~~i------------------------------------------------------------------------- 316 (603)
T KOG0318|consen 311 S-VLKVI------------------------------------------------------------------------- 316 (603)
T ss_pred C-hhhee-------------------------------------------------------------------------
Confidence 2 22222
Q ss_pred eeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcce
Q 001184 745 ELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLM 824 (1130)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 824 (1130)
.+|...|+++..++++++|++++.||.|.-|+...+...+.
T Consensus 317 -------------------~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~-------------------- 357 (603)
T KOG0318|consen 317 -------------------SGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRL-------------------- 357 (603)
T ss_pred -------------------cccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccc--------------------
Confidence 33888999999999999999999999999998765432110
Q ss_pred eccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEE--EeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEE
Q 001184 825 TNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTT--FMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIY 902 (1130)
Q Consensus 825 ~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iw 902 (1130)
....|...|.+++.+..+.++.++-|.++++.++.....-.. .+. .....+++..+ ++.+++.+..++ |.+.
T Consensus 358 ---~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~l-g~QP~~lav~~-d~~~avv~~~~~-iv~l 431 (603)
T KOG0318|consen 358 ---AGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKL-GSQPKGLAVLS-DGGTAVVACISD-IVLL 431 (603)
T ss_pred ---ccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeec-CCCceeEEEcC-CCCEEEEEecCc-EEEE
Confidence 113689999999999988888888899999998865433222 222 22334888888 665666666555 4444
Q ss_pred EeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE
Q 001184 903 NVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1130)
Q Consensus 903 d~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 982 (1130)
.-.++ +.... -.-...+++++|++..++.|+.|+.|.||.+...+....... ..+..+++.+++|||+.+|++
T Consensus 432 ~~~~~--~~~~~-~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~----~~h~a~iT~vaySpd~~yla~ 504 (603)
T KOG0318|consen 432 QDQTK--VSSIP-IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKL----LEHRAAITDVAYSPDGAYLAA 504 (603)
T ss_pred ecCCc--ceeec-cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeee----ecccCCceEEEECCCCcEEEE
Confidence 32222 12222 234578999999999999999999999999998664322211 223489999999999999999
Q ss_pred Ec-CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCc
Q 001184 983 NH-ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQ 1061 (1130)
Q Consensus 983 ~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1061 (1130)
++ .+.+.+||+.+.+....... .|...|.+++|||+.+++|+|+.|-.|.||+++.-.....+. .+|
T Consensus 505 ~Da~rkvv~yd~~s~~~~~~~w~--FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik----------nAH 572 (603)
T KOG0318|consen 505 GDASRKVVLYDVASREVKTNRWA--FHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK----------NAH 572 (603)
T ss_pred eccCCcEEEEEcccCceecceee--eeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEec----------ccc
Confidence 75 88999999998877433222 248899999999999999999999999999998655442222 234
Q ss_pred eeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 001184 1062 TVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1093 (1130)
Q Consensus 1062 ~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~ 1093 (1130)
...+..+.|.. +..|++++.|..|++|++.
T Consensus 573 ~~gVn~v~wld--e~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 573 LGGVNSVAWLD--ESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred ccCceeEEEec--CceEEeccCcceeEEeccc
Confidence 44466677754 5789999999999999874
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-49 Score=419.95 Aligned_cols=584 Identities=17% Similarity=0.285 Sum_probs=461.9
Q ss_pred EEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCC
Q 001184 351 VSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTK 430 (1130)
Q Consensus 351 ~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d 430 (1130)
--+.|+|||.. +++ ...+.|.++|+.+.+-.. ..-.+...|++++.||+|.+|++....
T Consensus 18 Gnl~ft~dG~s-viS-PvGNrvsv~dLknN~S~T-------------------l~~e~~~NI~~ialSp~g~lllavdE~ 76 (893)
T KOG0291|consen 18 GNLVFTKDGNS-VIS-PVGNRVSVFDLKNNKSYT-------------------LPLETRYNITRIALSPDGTLLLAVDER 76 (893)
T ss_pred CcEEECCCCCE-EEe-ccCCEEEEEEccCCccee-------------------EEeecCCceEEEEeCCCceEEEEEcCC
Confidence 34789999986 443 335689999998755332 122567789999999999999999999
Q ss_pred CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCC---------eeeEecCCCcCEE
Q 001184 431 HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGR---------KLFQFEGHEAPVY 501 (1130)
Q Consensus 431 ~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~---------~~~~~~~h~~~v~ 501 (1130)
|.+.+-++.....+. .+ .-+.+|.++.|||||+ ++|.|. .+.+.||..-+. ..+++.+|...|.
T Consensus 77 g~~~lvs~~~r~Vlh---~f-~fk~~v~~i~fSPng~--~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~ 149 (893)
T KOG0291|consen 77 GRALLVSLLSRSVLH---RF-NFKRGVGAIKFSPNGK--FFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDIT 149 (893)
T ss_pred CcEEEEecccceeeE---EE-eecCccceEEECCCCc--EEEEEe-cceeEEEecCcchhcccCcceEeeeecCCcccee
Confidence 999988887754333 12 2456799999999999 455443 578999993222 2356779999999
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcc--eeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC---
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS--RVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE--- 576 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--- 576 (1130)
++.|+ .|.++|++|+.|-.+++|.++..+. ...+.+|...|.+..|..+...+++.+. +|.+.+|....
T Consensus 150 si~Ws--~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvsk----dG~l~~W~~~~~P~ 223 (893)
T KOG0291|consen 150 SIDWS--DDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSK----DGALFVWTCDLRPP 223 (893)
T ss_pred EEEec--cCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEec----CceEEEEEecCCCc
Confidence 99995 5668999999999999999988777 4567888999999999999999999986 99999997651
Q ss_pred --------------------Cce----------eEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEE
Q 001184 577 --------------------GAL----------KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTST 626 (1130)
Q Consensus 577 --------------------~~~----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 626 (1130)
++. .+.+-......+++.+|++.-+.|++|-..|...+|.+....+++.+
T Consensus 224 ~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~L 303 (893)
T KOG0291|consen 224 ELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSL 303 (893)
T ss_pred ccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEe
Confidence 110 01111222246889999999999999999999999999999999999
Q ss_pred eccCCCCCcceEEEcCCCCEEEEEeCC-CcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccc
Q 001184 627 EAEGGLPSLPRLRFNKEGNLLVVTTAD-QGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAER 705 (1130)
Q Consensus 627 ~~~~~~~~i~~v~~s~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~ 705 (1130)
....+ +|..++|+..|.++|.|+.. |.+.+|+.....-.+
T Consensus 304 Sis~~--~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVl------------------------------------- 344 (893)
T KOG0291|consen 304 SISDQ--KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVL------------------------------------- 344 (893)
T ss_pred ecccc--eeeEEEecccCCEEEEcCCccceEEEEEeeccceee-------------------------------------
Confidence 87655 79999999999999999775 889999986651100
Q ss_pred cCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEe
Q 001184 706 VDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILAL 785 (1130)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~ 785 (1130)
+ ..+|..++.+++++|||+.+++|
T Consensus 345 ---------------------------------------K-----------------QQgH~~~i~~l~YSpDgq~iaTG 368 (893)
T KOG0291|consen 345 ---------------------------------------K-----------------QQGHSDRITSLAYSPDGQLIATG 368 (893)
T ss_pred ---------------------------------------e-----------------ccccccceeeEEECCCCcEEEec
Confidence 0 04488999999999999999999
Q ss_pred eeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCc
Q 001184 786 WSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNF 864 (1130)
Q Consensus 786 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~ 864 (1130)
++||.|++||. .+|..+.. ...|...|+.+.|+..|+.+++++ ||+|+.||+..+
T Consensus 369 ~eDgKVKvWn~----------------------~SgfC~vT--FteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 369 AEDGKVKVWNT----------------------QSGFCFVT--FTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred cCCCcEEEEec----------------------cCceEEEE--eccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 99999998864 33443332 236999999999999999999999 999999999999
Q ss_pred eeEEEEeCCCC-CeEEEEEeCCCCcEEEEEeCCC-cEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEE
Q 001184 865 KVMTTFMSPPP-ASTFLAFHPQDNNIIAIGMEDS-TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLI 942 (1130)
Q Consensus 865 ~~~~~~~~~~~-~i~~l~~sp~~~~~lasg~~dg-~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~ 942 (1130)
+..+++..+.. .-.|++..| .|.++..|+.|. .|++|++++|+++..+.||.++|.+++|+|+|..|+|++.|.+|+
T Consensus 425 rNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVR 503 (893)
T KOG0291|consen 425 RNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVR 503 (893)
T ss_pred ceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEE
Confidence 99999986543 467888888 788998888875 699999999999999999999999999999999999999999999
Q ss_pred EEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE-EcCCcEEEEECCCceeeeeeecC----------------
Q 001184 943 FWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGSKMECIRQWVPQ---------------- 1005 (1130)
Q Consensus 943 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~---------------- 1005 (1130)
+||+-..... ...+. ....+..++|+|||+-+++ .-||.|.+||...+.....+.+.
T Consensus 504 iW~if~s~~~-vEtl~-----i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~ 577 (893)
T KOG0291|consen 504 IWDIFSSSGT-VETLE-----IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAE 577 (893)
T ss_pred EEEeeccCce-eeeEe-----eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehh
Confidence 9998763211 11122 2267899999999999998 56999999999877766444322
Q ss_pred -CCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCccc-------------------------------
Q 001184 1006 -DVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYM------------------------------- 1053 (1130)
Q Consensus 1006 -~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~------------------------------- 1053 (1130)
.......+.+++|+||++|++|+..+.|++|++.++.++.+++...-.
T Consensus 578 ~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e 657 (893)
T KOG0291|consen 578 NSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLE 657 (893)
T ss_pred hcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCcccccccccccc
Confidence 112468899999999999999999999999999998777665421100
Q ss_pred -------c---cCCC----CCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q 001184 1054 -------S---QASP----NSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1096 (1130)
Q Consensus 1054 -------~---~~~~----~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~ 1096 (1130)
| .++. ....+.+..+.|+|. ++-++.++..| |.||.+.+.-
T Consensus 658 ~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPt-graFAaatTEG-l~IYsld~~~ 712 (893)
T KOG0291|consen 658 GRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPT-GRAFAAATTEG-LLIYSLDTTI 712 (893)
T ss_pred ccccccCCccccCCccccccCceEEEEEEEECCC-cCeeeeecccc-eEEEecCCce
Confidence 0 0000 111577899999996 88999999999 7799986654
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-49 Score=404.45 Aligned_cols=533 Identities=15% Similarity=0.234 Sum_probs=424.5
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCE
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 423 (1130)
.+|...|+-..|||.|- ++|+|...|+|||||....+.+.+.+|+ .-.++|..++|++|+++
T Consensus 56 tEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKnef~-----------------v~aG~I~Di~Wd~ds~R 117 (603)
T KOG0318|consen 56 TEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNEFQ-----------------VLAGPIKDISWDFDSKR 117 (603)
T ss_pred ccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeeeee-----------------ecccccccceeCCCCcE
Confidence 35999999999999997 5999999999999999876665544433 45678999999999999
Q ss_pred EEEEeCC----CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCc
Q 001184 424 IGVAFTK----HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA 498 (1130)
Q Consensus 424 las~~~d----~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~ 498 (1130)
|++.++- |.+.+|| +|..+. ++.||...|.+++|-|.-.. .++||++|++|.+|+ .--+.-.++..|..
T Consensus 118 I~avGEGrerfg~~F~~D--SG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~Hsk 191 (603)
T KOG0318|consen 118 IAAVGEGRERFGHVFLWD--SGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFREHSK 191 (603)
T ss_pred EEEEecCccceeEEEEec--CCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeeccccccc
Confidence 9887643 3455565 454444 68999999999999998765 899999999999999 66677788889999
Q ss_pred CEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeec---CCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC
Q 001184 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD---APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1130)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1130)
-|+++.|+| ||..+++++.||++.+||-.+++....+. .|.+.|.+++|+||++.+++++. |.++++||+.
T Consensus 192 FV~~VRysP--DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa----Dkt~KIWdVs 265 (603)
T KOG0318|consen 192 FVNCVRYSP--DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA----DKTIKIWDVS 265 (603)
T ss_pred ceeeEEECC--CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC----CceEEEEEee
Confidence 999999965 57899999999999999999999998887 78889999999999999999986 8999999999
Q ss_pred CCceeEEEecccC---ceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeC
Q 001184 576 EGALKRTYIGFRK---KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTA 652 (1130)
Q Consensus 576 ~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~ 652 (1130)
+.++++++..... ..+.|+ |. +..|++.+.+|.|.+++......+..+.+|.. .|+++..+|++++|++|+.
T Consensus 266 ~~slv~t~~~~~~v~dqqvG~l-Wq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK--~ITaLtv~~d~~~i~Sgsy 340 (603)
T KOG0318|consen 266 TNSLVSTWPMGSTVEDQQVGCL-WQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNK--SITALTVSPDGKTIYSGSY 340 (603)
T ss_pred ccceEEEeecCCchhceEEEEE-Ee--CCeEEEEEcCcEEEEecccCCChhheeccccc--ceeEEEEcCCCCEEEeecc
Confidence 9999998875433 234433 43 67899999999999999999998888887655 8999999999999999999
Q ss_pred CCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcc
Q 001184 653 DQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPR 732 (1130)
Q Consensus 653 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1130)
||.|.-|+...+..... .
T Consensus 341 DG~I~~W~~~~g~~~~~---------------------------~----------------------------------- 358 (603)
T KOG0318|consen 341 DGHINSWDSGSGTSDRL---------------------------A----------------------------------- 358 (603)
T ss_pred CceEEEEecCCcccccc---------------------------c-----------------------------------
Confidence 99999999877621100 0
Q ss_pred cccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccc
Q 001184 733 NLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVA 812 (1130)
Q Consensus 733 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 812 (1130)
+..|...|.+++.+..+. +++++.|.++++.++..+.......
T Consensus 359 ------------------------------g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~~------ 401 (603)
T KOG0318|consen 359 ------------------------------GKGHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSEV------ 401 (603)
T ss_pred ------------------------------cccccceEEEEeecCCCc-EEEEecCCeEEEEecccCcccccce------
Confidence 023778888888876554 7788888899887664432211110
Q ss_pred cccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEE
Q 001184 813 PQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAI 892 (1130)
Q Consensus 813 ~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~las 892 (1130)
. .......+++..+|+.+++...++.|.+..-.+.- .+.. ..-...+++++| ++..+|+
T Consensus 402 -----------~------~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~--~~~~-~~y~~s~vAv~~-~~~~vaV 460 (603)
T KOG0318|consen 402 -----------V------KLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKV--SSIP-IGYESSAVAVSP-DGSEVAV 460 (603)
T ss_pred -----------e------ecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcc--eeec-cccccceEEEcC-CCCEEEE
Confidence 0 11233348999999988888887666666533322 1221 234578899999 9999999
Q ss_pred EeCCCcEEEEEeecCeE--EEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEE
Q 001184 893 GMEDSTIQIYNVRVDEV--KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETR 970 (1130)
Q Consensus 893 g~~dg~v~iwd~~~~~~--~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~ 970 (1130)
|+.||.|+||.+..+.+ ...+..|.++|+++++|||+.+||++...+.+.+||+.+.+...... .-|...|.+
T Consensus 461 GG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w-----~FHtakI~~ 535 (603)
T KOG0318|consen 461 GGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRW-----AFHTAKINC 535 (603)
T ss_pred ecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceeccee-----eeeeeeEEE
Confidence 99999999999987653 33567899999999999999999999999999999999966522111 123378999
Q ss_pred EEEcCCCcEEEEE-cCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 001184 971 VQFHSDQVRLLVN-HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039 (1130)
Q Consensus 971 ~~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~ 1039 (1130)
++|+|+..++|++ -|..|.||+++.-... +....+|...|+.+.|- |...+++++.|..|++|++.
T Consensus 536 ~aWsP~n~~vATGSlDt~Viiysv~kP~~~--i~iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 536 VAWSPNNKLVATGSLDTNVIIYSVKKPAKH--IIIKNAHLGGVNSVAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEeCCCceEEEeccccceEEEEEccChhhh--eEeccccccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence 9999999999995 5999999999864443 22334457779999997 55678899999999999874
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-48 Score=415.96 Aligned_cols=552 Identities=16% Similarity=0.243 Sum_probs=434.8
Q ss_pred eccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCC
Q 001184 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1130)
Q Consensus 343 ~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 422 (1130)
.+.+...|++++.||+|. +|++-...|...+-++.....++... .+..|.|+.|||||+
T Consensus 51 ~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f~--------------------fk~~v~~i~fSPng~ 109 (893)
T KOG0291|consen 51 PLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRFN--------------------FKRGVGAIKFSPNGK 109 (893)
T ss_pred EeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEEe--------------------ecCccceEEECCCCc
Confidence 356899999999999997 57777788888888887766665322 246899999999999
Q ss_pred EEEEEeCCCeEEEEEecCCcc-----ceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-c--CCCeeeEec
Q 001184 423 FIGVAFTKHLIHLYTYQGSND-----LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-L--SGRKLFQFE 494 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~-----~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~--~~~~~~~~~ 494 (1130)
++|+|.. +.+.||....... .....++.+|...|.++.|+.|.+ ++++|+.|.++++|+ . ++-..+.+.
T Consensus 110 ~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~l~ 186 (893)
T KOG0291|consen 110 FFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LLVTGSRDLSARLFGVDGNKNLFTYALN 186 (893)
T ss_pred EEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eEEeccccceEEEEEeccccccceEecc
Confidence 9999864 5799998765332 233446779999999999999999 899999999999999 2 333467788
Q ss_pred CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccC-----------------------Ccc-----------eeeecCC
Q 001184 495 GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN-----------------------VGS-----------RVDYDAP 540 (1130)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-----------------------~~~-----------~~~~~~~ 540 (1130)
+|...|....|. .+...+++.+.||.+.+|.... ++. ..-+...
T Consensus 187 gHkd~VvacfF~--~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~ 264 (893)
T KOG0291|consen 187 GHKDYVVACFFG--ANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQN 264 (893)
T ss_pred CCCcceEEEEec--cCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeeccc
Confidence 999999998885 4446799999999999997761 011 0011222
Q ss_pred CccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCC-CcEEEEeCCC
Q 001184 541 GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED-NQIKFWDMDN 619 (1130)
Q Consensus 541 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~vwd~~~ 619 (1130)
...+++.+|++..+.|+++-. .|...+|.+....+++.+.-... .+..++|+..|.+|+.|+.. |.+-||+..+
T Consensus 265 ~~kvtaa~fH~~t~~lvvgFs----sG~f~LyelP~f~lih~LSis~~-~I~t~~~N~tGDWiA~g~~klgQLlVweWqs 339 (893)
T KOG0291|consen 265 SSKVTAAAFHKGTNLLVVGFS----SGEFGLYELPDFNLIHSLSISDQ-KILTVSFNSTGDWIAFGCSKLGQLLVWEWQS 339 (893)
T ss_pred ccceeeeeccCCceEEEEEec----CCeeEEEecCCceEEEEeecccc-eeeEEEecccCCEEEEcCCccceEEEEEeec
Confidence 356889999999999999876 78899999999999988876433 79999999999999998764 8999999988
Q ss_pred CceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccc
Q 001184 620 VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPV 699 (1130)
Q Consensus 620 ~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 699 (1130)
..-+...+ +|...+++++++|||+++|+|++||.|+|||...+. ++.+
T Consensus 340 EsYVlKQQ--gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf-C~vT----------------------------- 387 (893)
T KOG0291|consen 340 ESYVLKQQ--GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF-CFVT----------------------------- 387 (893)
T ss_pred cceeeecc--ccccceeeEEECCCCcEEEeccCCCcEEEEeccCce-EEEE-----------------------------
Confidence 76555554 455589999999999999999999999999987762 1111
Q ss_pred cccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccC
Q 001184 700 LSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSG 779 (1130)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g 779 (1130)
+ ..|.+.++.+.|+..|
T Consensus 388 ------------------------------------------------------------F---teHts~Vt~v~f~~~g 404 (893)
T KOG0291|consen 388 ------------------------------------------------------------F---TEHTSGVTAVQFTARG 404 (893)
T ss_pred ------------------------------------------------------------e---ccCCCceEEEEEEecC
Confidence 1 2388999999999999
Q ss_pred CeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-C-CeEE
Q 001184 780 IGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-G-GKVS 857 (1130)
Q Consensus 780 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-d-g~i~ 857 (1130)
+.+++.+-||+++.||+.....- .. +.........|++..|.|.++++|+ | =.|.
T Consensus 405 ~~llssSLDGtVRAwDlkRYrNf----------------------RT-ft~P~p~QfscvavD~sGelV~AG~~d~F~If 461 (893)
T KOG0291|consen 405 NVLLSSSLDGTVRAWDLKRYRNF----------------------RT-FTSPEPIQFSCVAVDPSGELVCAGAQDSFEIF 461 (893)
T ss_pred CEEEEeecCCeEEeeeeccccee----------------------ee-ecCCCceeeeEEEEcCCCCEEEeeccceEEEE
Confidence 99999999999999997642111 00 1112344567899999999999998 4 3499
Q ss_pred EEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecC-eEEEEEecCCCCeeEEEEccCCCeEEEEe
Q 001184 858 LFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD-EVKTKLKGHQKHITGLAFSTNLNILVSSG 936 (1130)
Q Consensus 858 iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~s~dg~~L~s~s 936 (1130)
+|++++|+.+..+.+|.++|.+++|+| .+.+||+|++|.+|++||+-.. ..+.++. +...+++++|+|||+.|++++
T Consensus 462 vWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaT 539 (893)
T KOG0291|consen 462 VWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVAT 539 (893)
T ss_pred EEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEE
Confidence 999999999999999999999999999 8999999999999999999754 3445554 667799999999999999999
Q ss_pred CCCcEEEEECCCCccccee--------------eEeccCCCCCCCeEEEEEcCCCcEEEE-EcCCcEEEEECCCceeeee
Q 001184 937 SDAQLIFWNTDTWEKRKSI--------------AIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGSKMECIRQ 1001 (1130)
Q Consensus 937 ~Dg~i~vwd~~~~~~~~~~--------------~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~ 1001 (1130)
-||.|.+||++.+...... .+...........+.+++|+||.++++ +..+.|++|++.++-.++.
T Consensus 540 ldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkk 619 (893)
T KOG0291|consen 540 LDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKK 619 (893)
T ss_pred ecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeee
Confidence 9999999999875544211 111111122357899999999999988 6789999999998887776
Q ss_pred eecCCC-----------------------------------------------------CCCCeEEEEECCCCCEEEEEe
Q 001184 1002 WVPQDV-----------------------------------------------------LSSPISSAAYSCNSQLIYATF 1028 (1130)
Q Consensus 1002 ~~~~~~-----------------------------------------------------~~~~v~~v~~s~dg~~l~t~~ 1028 (1130)
+..... ..-.|+++.|||.|+-+|+++
T Consensus 620 fqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaat 699 (893)
T KOG0291|consen 620 FQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAAT 699 (893)
T ss_pred EEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeeeeec
Confidence 522111 012478999999999999999
Q ss_pred CCCcEEEEeCCCcccccc
Q 001184 1029 TDGSIGVFDADSLRLRCR 1046 (1130)
Q Consensus 1029 ~Dg~i~vwd~~~~~~~~~ 1046 (1130)
..| |.||.+.+.-+...
T Consensus 700 TEG-l~IYsld~~~~FDP 716 (893)
T KOG0291|consen 700 TEG-LLIYSLDTTILFDP 716 (893)
T ss_pred ccc-eEEEecCCceEEcc
Confidence 777 77888876654433
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-50 Score=396.40 Aligned_cols=332 Identities=24% Similarity=0.378 Sum_probs=292.7
Q ss_pred ccceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEE
Q 001184 337 PRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVA 416 (1130)
Q Consensus 337 ~~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 416 (1130)
+++-...-+|.+.|.|++|+|+|++ ||+|+.|.++|+||+.+..... +.++|...|.|++
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~-l~tGsGD~TvR~WD~~TeTp~~-------------------t~KgH~~WVlcva 164 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSR-LVTGSGDTTVRLWDLDTETPLF-------------------TCKGHKNWVLCVA 164 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCce-EEecCCCceEEeeccCCCCcce-------------------eecCCccEEEEEE
Confidence 3444444579999999999999995 9999999999999999877665 6889999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEec-----CCCceEEEEEcCCCcEEEEe-cCCCee
Q 001184 417 WSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY-----PNKQLCIVTCGDDKLIRVWD-LSGRKL 490 (1130)
Q Consensus 417 ~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~-----d~~~l~l~s~s~d~~v~iwd-~~~~~~ 490 (1130)
|||||+.||+|+.||+|++||.++|+++.. .+.+|...|++++|-| ..+ +|++++.||+|+||| ..+.++
T Consensus 165 wsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~ 240 (480)
T KOG0271|consen 165 WSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCV 240 (480)
T ss_pred ECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEE
Confidence 999999999999999999999999987764 5889999999999976 455 799999999999999 888999
Q ss_pred eEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEe-----------cCCC-----
Q 001184 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYS-----------ADGS----- 554 (1130)
Q Consensus 491 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s-----------~~~~----- 554 (1130)
..+.||+.+|+|++|- ...++++|+.|++|++|+...+.....+.+|.++|+.++.+ |.++
T Consensus 241 ~~lsgHT~~VTCvrwG---G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~ 317 (480)
T KOG0271|consen 241 RTLSGHTASVTCVRWG---GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSF 317 (480)
T ss_pred EEeccCccceEEEEEc---CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCCh
Confidence 9999999999999983 33599999999999999999988889999999999999887 2233
Q ss_pred --------------------eEEEeeecCCCCcEEEEeeCCC-CceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEE
Q 001184 555 --------------------RLFSCGTSKEGDSHLVEWNESE-GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIK 613 (1130)
Q Consensus 555 --------------------~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 613 (1130)
++++++. +.++.+|+... .+++..+.+|.. .|+.+.|+||++++++++.|..|+
T Consensus 318 se~~~~Al~rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq~-lVn~V~fSPd~r~IASaSFDkSVk 392 (480)
T KOG0271|consen 318 SEEQKKALERYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQA-LVNHVSFSPDGRYIASASFDKSVK 392 (480)
T ss_pred HHHHHHHHHHHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchhh-heeeEEECCCccEEEEeeccccee
Confidence 4888875 89999999754 457788888777 899999999999999999999999
Q ss_pred EEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhccccccccccccccccccccee
Q 001184 614 FWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVV 693 (1130)
Q Consensus 614 vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1130)
+||..+|+.+.++.+|-. .|+.++|+.|.++|++|+.|.++++|++.+. .+...
T Consensus 393 LW~g~tGk~lasfRGHv~--~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk-Kl~~D----------------------- 446 (480)
T KOG0271|consen 393 LWDGRTGKFLASFRGHVA--AVYQVAWSADSRLLVSGSKDSTLKVWDVRTK-KLKQD----------------------- 446 (480)
T ss_pred eeeCCCcchhhhhhhccc--eeEEEEeccCccEEEEcCCCceEEEEEeeee-eeccc-----------------------
Confidence 999999999999986644 8999999999999999999999999998765 11111
Q ss_pred eccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEE
Q 001184 694 TTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARL 773 (1130)
Q Consensus 694 ~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 773 (1130)
+ ++|..+|.++
T Consensus 447 ------------------------------------------------------------------L---pGh~DEVf~v 457 (480)
T KOG0271|consen 447 ------------------------------------------------------------------L---PGHADEVFAV 457 (480)
T ss_pred ------------------------------------------------------------------C---CCCCceEEEE
Confidence 1 3488999999
Q ss_pred EEeccCCeEEEeeeCCeEEeee
Q 001184 774 LYTNSGIGILALWSNGVQKLWK 795 (1130)
Q Consensus 774 ~~s~~g~~l~~~~~dg~i~iw~ 795 (1130)
.++|||..+++++.|..+++|.
T Consensus 458 DwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 458 DWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EecCCCceeecCCCceEEEeec
Confidence 9999999999999999999994
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=409.86 Aligned_cols=554 Identities=15% Similarity=0.240 Sum_probs=435.3
Q ss_pred ccccCCCCCcccccCCcccceeee-ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeecccccc
Q 001184 320 ATYPVPSQQATWSLDDLPRAVACT-MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSM 398 (1130)
Q Consensus 320 ~~~s~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 398 (1130)
++.|+..++.+|............ .....+|+|+.-+||.- +||+|..||.|+||+..++....
T Consensus 37 va~~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~-------------- 101 (888)
T KOG0306|consen 37 VAVSALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILI-------------- 101 (888)
T ss_pred EEEeccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceee--------------
Confidence 666666677888877653332222 34556999999999986 79999999999999999876554
Q ss_pred ceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCC
Q 001184 399 MLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK 478 (1130)
Q Consensus 399 ~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~ 478 (1130)
.+.||..+|+++.|+..|..||+||.|+.|.+||+-....+ ..+.||.+.|+..-|..+.+ +++++|.|+
T Consensus 102 -----tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl---~rL~GHkd~iT~~~F~~~~~--~lvS~sKDs 171 (888)
T KOG0306|consen 102 -----TFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGL---FRLRGHKDSITQALFLNGDS--FLVSVSKDS 171 (888)
T ss_pred -----eecccccceEEEEEcccCceEeecCCCccEEEEEeccceee---EEeecchHHHhHHhccCCCe--EEEEeccCc
Confidence 57899999999999999999999999999999999775433 36899999999999998777 899999999
Q ss_pred cEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcce------e------e-ecCCCccE
Q 001184 479 LIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR------V------D-YDAPGLWC 544 (1130)
Q Consensus 479 ~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~------~------~-~~~~~~~v 544 (1130)
.|++|| .+..|..+...|.+.++.+++.+ +.+++++.|+.+++|++...... . . .....+..
T Consensus 172 ~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~ 247 (888)
T KOG0306|consen 172 MIKFWDLETQHCFETHVDHRGEIWALVLDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGRE 247 (888)
T ss_pred eEEEEecccceeeeEEecccceEEEEEEec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCce
Confidence 999999 88889999999999999999865 68999999999999998321110 0 0 11122234
Q ss_pred EEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCcee-----------------------------------EEEecccCc
Q 001184 545 TTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK-----------------------------------RTYIGFRKK 589 (1130)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~-----------------------------------~~~~~~~~~ 589 (1130)
-.++..++++++++-+. |..+.++.+.+.+.+ ..+. ...
T Consensus 248 i~l~~d~s~r~~~c~g~----d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir--~~~ 321 (888)
T KOG0306|consen 248 INLVTDFSDRFLVCQGA----DKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIR--TSA 321 (888)
T ss_pred eEEeecCcccEEEEecc----hhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHhee--chh
Confidence 45667778888887765 667777766542110 0000 011
Q ss_pred eeEEEEEcCCCC---EEEEEeCCCcEEEEeCCC-Cc------eeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEE
Q 001184 590 SAGVVQFDTTRN---RILAAGEDNQIKFWDMDN-VN------MLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659 (1130)
Q Consensus 590 ~v~~~~~~~~~~---~l~~~~~dg~i~vwd~~~-~~------~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw 659 (1130)
.+..+.+.|.++ .++. -.++++..|.++. +. .+..+...+|...|.++++|.+...+++| ..+.+.+|
T Consensus 322 kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg-a~~SikiW 399 (888)
T KOG0306|consen 322 KIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASG-AGESIKIW 399 (888)
T ss_pred heeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeec-CCCcEEEE
Confidence 345566666553 3333 5677888888765 21 23345555666789999999988776666 46799999
Q ss_pred EcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCC
Q 001184 660 ANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISD 739 (1130)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 739 (1130)
+..+. ++.+++
T Consensus 400 n~~t~-kciRTi-------------------------------------------------------------------- 410 (888)
T KOG0306|consen 400 NRDTL-KCIRTI-------------------------------------------------------------------- 410 (888)
T ss_pred EccCc-ceeEEe--------------------------------------------------------------------
Confidence 98776 333322
Q ss_pred CccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCC
Q 001184 740 KTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPS 819 (1130)
Q Consensus 740 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~ 819 (1130)
..+.+.+..|-|.+++++.|..+|.+.+||+.....
T Consensus 411 --------------------------~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l------------------ 446 (888)
T KOG0306|consen 411 --------------------------TCGYILASKFVPGDRYIVLGTKNGELQVFDLASASL------------------ 446 (888)
T ss_pred --------------------------ccccEEEEEecCCCceEEEeccCCceEEEEeehhhh------------------
Confidence 223667888999999999999999999998754221
Q ss_pred CCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCC-----ceeE--------EEEeCCCCCeEEEEEeCC
Q 001184 820 NGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMN-----FKVM--------TTFMSPPPASTFLAFHPQ 885 (1130)
Q Consensus 820 ~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~-----~~~~--------~~~~~~~~~i~~l~~sp~ 885 (1130)
+. ....|.+.|+.++.+||++.+++|+ |.+|++||..- +... ++++ -...|.|+.+||
T Consensus 447 ----~E--ti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Sp- 518 (888)
T KOG0306|consen 447 ----VE--TIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSP- 518 (888)
T ss_pred ----hh--hhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcC-
Confidence 11 1126999999999999999999999 99999999641 2211 1222 356799999999
Q ss_pred CCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCC
Q 001184 886 DNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLP 965 (1130)
Q Consensus 886 ~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 965 (1130)
|+++||++--|.+|+||-+++-+....+.||.-||.||..|||++.+++||.|++|++|-++-|.+.+... .|.
T Consensus 519 dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f------AHd 592 (888)
T KOG0306|consen 519 DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF------AHD 592 (888)
T ss_pred CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh------ccc
Confidence 99999999999999999999999999999999999999999999999999999999999999988755442 234
Q ss_pred CCeEEEEEcCCCcEEEE-EcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 001184 966 VGETRVQFHSDQVRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS 1040 (1130)
Q Consensus 966 ~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~ 1040 (1130)
..|.++.|-|+..++.+ |.|+.++-||....+.++.+.+| -..|+|++.+|+|.++++++.|.+||+|.-..
T Consensus 593 DSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H---~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 593 DSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGH---HSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred CceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccc---hheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 78999999998887776 78999999999999999999888 68999999999999999999999999998665
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=393.18 Aligned_cols=367 Identities=21% Similarity=0.313 Sum_probs=302.0
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
.+.||.++|.|++|+|+|++||+|+.|.++++||+.+.... ++.++|...|.+++|+|||+ .|++|+.||+|++|
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~---~t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL---FTCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLW 184 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc---eeecCCccEEEEEEECCCcc--hhhccccCCeEEEe
Confidence 47799999999999999999999999999999999997644 47899999999999999999 89999999999999
Q ss_pred e-cCCCee-eEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeee
Q 001184 484 D-LSGRKL-FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGT 561 (1130)
Q Consensus 484 d-~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1130)
| .+|+++ ..|.+|...|++++|.|-. ..|.+++|++++.
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~h---------------------------------------l~p~~r~las~sk 225 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLH---------------------------------------LVPPCRRLASSSK 225 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccc---------------------------------------cCCCccceecccC
Confidence 9 777655 7799999999999996522 2455667777765
Q ss_pred cCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEc
Q 001184 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN 641 (1130)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s 641 (1130)
||.++|||+..+.++..+.+|.. .|+|+.|..+ .+|++|+.|++|++|+...|.+...+.+|++ .|+.++.+
T Consensus 226 ----Dg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lals 297 (480)
T KOG0271|consen 226 ----DGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLALS 297 (480)
T ss_pred ----CCCEEEEEccCceEEEEeccCcc-ceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccch--heeeeecc
Confidence 88889999888999999999887 8999999865 4999999999999999999999999999988 89999988
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCC
Q 001184 642 KEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGA 721 (1130)
Q Consensus 642 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~ 721 (1130)
-+- .|-+|..|.+=+-....+ ....+.+..... ..+
T Consensus 298 Tdy-~LRtgaf~~t~~~~~~~s-e~~~~Al~rY~~-------------------~~~----------------------- 333 (480)
T KOG0271|consen 298 TDY-VLRTGAFDHTGRKPKSFS-EEQKKALERYEA-------------------VLK----------------------- 333 (480)
T ss_pred chh-hhhccccccccccCCChH-HHHHHHHHHHHH-------------------hhc-----------------------
Confidence 653 344554443322211111 111122211110 000
Q ss_pred CccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCC
Q 001184 722 DSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQ 801 (1130)
Q Consensus 722 ~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 801 (1130)
..+..++++++|.++.+|+-.....
T Consensus 334 -------------------------------------------------------~~~erlVSgsDd~tlflW~p~~~kk 358 (480)
T KOG0271|consen 334 -------------------------------------------------------DSGERLVSGSDDFTLFLWNPFKSKK 358 (480)
T ss_pred -------------------------------------------------------cCcceeEEecCCceEEEeccccccc
Confidence 1235577888888888886332111
Q ss_pred CCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEE
Q 001184 802 NPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFL 880 (1130)
Q Consensus 802 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l 880 (1130)
.+.. ..+|..-|..+.||||++++|+++ |..|++||..+|+.+.+|++|-..|..+
T Consensus 359 ---------------------pi~r--mtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqv 415 (480)
T KOG0271|consen 359 ---------------------PITR--MTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQV 415 (480)
T ss_pred ---------------------chhh--hhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEE
Confidence 1110 126899999999999999999999 9999999999999999999999999999
Q ss_pred EEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEE
Q 001184 881 AFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945 (1130)
Q Consensus 881 ~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd 945 (1130)
+|+. |.++|++|+.|.++++|++.+.++...|.||.++|.++.|+|||..+++++.|+.+++|.
T Consensus 416 awsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 416 AWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred Eecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999 899999999999999999999999999999999999999999999999999999999994
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=403.64 Aligned_cols=570 Identities=16% Similarity=0.174 Sum_probs=438.5
Q ss_pred CCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCc
Q 001184 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA 498 (1130)
Q Consensus 420 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~ 498 (1130)
.|+++|+.. -..|.+||+++|+..+.. ....-...|+++.-++|.- +||.|..||.|+||+ .++..+.++.||..
T Consensus 33 ~Gr~va~~a-~E~vn~WdlRtge~~~~l-~~~~~k~evt~l~~~~d~l--~lAVGYaDGsVqif~~~s~~~~~tfngHK~ 108 (888)
T KOG0306|consen 33 KGRAVAVSA-LEQVNIWDLRTGEIEKKL-ILLKKKAEVTCLRSSDDIL--LLAVGYADGSVQIFSLESEEILITFNGHKA 108 (888)
T ss_pred CCcEEEEec-cccEeEEeeecchhhhhh-hhhcccceEEEeeccCCcc--eEEEEecCceEEeeccCCCceeeeeccccc
Confidence 588887632 345999999999543322 1223446799999888887 899999999999999 88888999999999
Q ss_pred CEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc
Q 001184 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1130)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1130)
.|+.+.|. ..|..|++||.|+.|.+||+-.......+.+|...|+.+-|..+.+++++++. |+.|++||+++..
T Consensus 109 AVt~l~fd--~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sK----Ds~iK~WdL~tqh 182 (888)
T KOG0306|consen 109 AVTTLKFD--KIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSK----DSMIKFWDLETQH 182 (888)
T ss_pred ceEEEEEc--ccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEecc----CceEEEEecccce
Confidence 99999984 56689999999999999999999999999999999999999998999999987 9999999999999
Q ss_pred eeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-------c-----eeEEEeccCCCCCcceEEEcCCCCE
Q 001184 579 LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV-------N-----MLTSTEAEGGLPSLPRLRFNKEGNL 646 (1130)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-------~-----~~~~~~~~~~~~~i~~v~~s~~~~~ 646 (1130)
+..+...|.. .+.++++.+ +.+++++.|+.+++|++... . ...++...+ .+....++..+++++
T Consensus 183 Cf~Thvd~r~-Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqs-k~R~i~l~~d~s~r~ 258 (888)
T KOG0306|consen 183 CFETHVDHRG-EIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQS-KGREINLVTDFSDRF 258 (888)
T ss_pred eeeEEecccc-eEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeecc-CCceeEEeecCcccE
Confidence 9999988776 899999986 78999999999999998211 0 111122122 223455667778899
Q ss_pred EEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCC-CCCcccccCCCccc
Q 001184 647 LVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSP-ARPSTILNGADSAA 725 (1130)
Q Consensus 647 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 725 (1130)
+++-+.|..+.++.+....+..+.+........ +... .++..
T Consensus 259 ~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~K----------------------------kka~t~e~~~--------- 301 (888)
T KOG0306|consen 259 LVCQGADKVIELFRIRSKEEIAKILSKKLKRAK----------------------------KKAETEENED--------- 301 (888)
T ss_pred EEEecchhhhhheeecCHHHHHHHHHHHHHHhh----------------------------hhcccccccc---------
Confidence 999999999999998877555444322100000 0000 00000
Q ss_pred cCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeE--EEeeeCCeEEeeecCCC-CCC
Q 001184 726 RGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGI--LALWSNGVQKLWKWNRT-EQN 802 (1130)
Q Consensus 726 ~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l--~~~~~dg~i~iw~~~~~-~~~ 802 (1130)
....+-+..+-.+.+ .....+|.++.+.|.+... ++.-.++++..|.++.. ...
T Consensus 302 --------~v~~sl~~~i~r~~~---------------ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~ 358 (888)
T KOG0306|consen 302 --------DVEKSLSDEIKRLET---------------IRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTS 358 (888)
T ss_pred --------chhhhHHHHHHHHHh---------------eechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCC
Confidence 000000000001111 1145677788887765432 33366788888877651 111
Q ss_pred CCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeEEEEE
Q 001184 803 PSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAF 882 (1130)
Q Consensus 803 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~ 882 (1130)
|...... ..-..+|...|+++++|.|...+++|+.+.|++|+..+.++++++.. +.+.+..|
T Consensus 359 p~~~~~~----------------~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~--~y~l~~~F 420 (888)
T KOG0306|consen 359 PEADRTS----------------NIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITC--GYILASKF 420 (888)
T ss_pred ccccccc----------------eeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEecc--ccEEEEEe
Confidence 1111110 11123799999999999999999999999999999999999999974 48999999
Q ss_pred eCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccce---eeEe-
Q 001184 883 HPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS---IAIQ- 958 (1130)
Q Consensus 883 sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~---~~~~- 958 (1130)
.| +++++++|...|.+.+||+.+...+.+.++|.+.|++++.+||++.++++|.|.+|++||..--..... ..+.
T Consensus 421 vp-gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl 499 (888)
T KOG0306|consen 421 VP-GDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSL 499 (888)
T ss_pred cC-CCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeee
Confidence 99 899999999999999999999999999999999999999999999999999999999999764221100 0011
Q ss_pred --ccCCCCCCCeEEEEEcCCCcEEEEE-cCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 001184 959 --LPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGV 1035 (1130)
Q Consensus 959 --~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~v 1035 (1130)
...-..+..+.++.+||||++|+++ -|.+++||-+++.+....+.+| .-||.||.+|||+++++|||.|.+|+|
T Consensus 500 ~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGH---kLPV~smDIS~DSklivTgSADKnVKi 576 (888)
T KOG0306|consen 500 KHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGH---KLPVLSMDISPDSKLIVTGSADKNVKI 576 (888)
T ss_pred ccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccc---ccceeEEeccCCcCeEEeccCCCceEE
Confidence 1111234789999999999999997 5999999999999999999888 789999999999999999999999999
Q ss_pred EeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 001184 1036 FDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETER 1097 (1130)
Q Consensus 1036 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~~ 1097 (1130)
|-++-|.+...+. +|...++++.|.| ..+++.++|.|+.|+-||-.+-+.
T Consensus 577 WGLdFGDCHKS~f-----------AHdDSvm~V~F~P-~~~~FFt~gKD~kvKqWDg~kFe~ 626 (888)
T KOG0306|consen 577 WGLDFGDCHKSFF-----------AHDDSVMSVQFLP-KTHLFFTCGKDGKVKQWDGEKFEE 626 (888)
T ss_pred eccccchhhhhhh-----------cccCceeEEEEcc-cceeEEEecCcceEEeechhhhhh
Confidence 9999999877764 5667888999999 478999999999999998765443
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-43 Score=372.34 Aligned_cols=610 Identities=14% Similarity=0.198 Sum_probs=410.5
Q ss_pred EEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEe--
Q 001184 351 VSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF-- 428 (1130)
Q Consensus 351 ~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~-- 428 (1130)
..++-+|... ++|- -....|.+||....+..+ ++..|..+++|++||++|+|+|+|-
T Consensus 41 ~gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ~h-------------------lvnssRk~~t~vAfS~~GryvatGEcG 99 (1080)
T KOG1408|consen 41 NGLASVPCSG-LCAY-PAGCVVVLFNVDSCTQSH-------------------LVNSSRKPLTCVAFSQNGRYVATGECG 99 (1080)
T ss_pred Cccccccccc-ceee-ccCcEEEEEcccccchhh-------------------eecccCcceeEEEEcCCCcEEEecccC
Confidence 4455666554 2332 224589999987655433 5778888999999999999999984
Q ss_pred CCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcC--CCcEEEEecCCCeeeEecCCCcCEEEEeec
Q 001184 429 TKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD--DKLIRVWDLSGRKLFQFEGHEAPVYSVCPH 506 (1130)
Q Consensus 429 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~--d~~v~iwd~~~~~~~~~~~h~~~v~~~~~~ 506 (1130)
....++||++.....+. ++..|...|+|++|+|.++ ++++.+. |-.|-+||........-..-...|..++|
T Consensus 100 ~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asnkiss~Vsav~f- 173 (1080)
T KOG1408|consen 100 RTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASNKISSVVSAVAF- 173 (1080)
T ss_pred CCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhcccccccccceeEEEEEE-
Confidence 66789999999876444 6889999999999999999 6777654 66788898322222222234567888888
Q ss_pred ccCCccEEEEEecCCcEEEEEccCCccee---eecCCCccEEEEEE------------ecCCCeEEEeeecCCCCcEEEE
Q 001184 507 QKENIHFIFSTAVDGKIKAWLYDNVGSRV---DYDAPGLWCTTMLY------------SADGSRLFSCGTSKEGDSHLVE 571 (1130)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~---~~~~~~~~v~~~~~------------s~~~~~l~~~~~~~~~~~~i~~ 571 (1130)
+.++.++++.+ ...|++|.++...+.. .+.+...-.-.+.+ ..+..+-++. .|.+.-
T Consensus 174 -sEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~------qGhLvE 245 (1080)
T KOG1408|consen 174 -SEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITA------QGHLVE 245 (1080)
T ss_pred -ccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEec------ccceee
Confidence 56778888876 5789999988665222 11111110001111 1111111111 233332
Q ss_pred eeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEecc----------------------
Q 001184 572 WNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE---------------------- 629 (1130)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---------------------- 629 (1130)
+. ..+++..+..-......|++++ .++|++|+.+|.|++|+..+-.-..++...
T Consensus 246 FS--sRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~ 321 (1080)
T KOG1408|consen 246 FS--SRRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSP 321 (1080)
T ss_pred ec--hhhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCc
Confidence 22 2222222222222245566665 579999999999999998775444333221
Q ss_pred CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCC
Q 001184 630 GGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRS 709 (1130)
Q Consensus 630 ~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~ 709 (1130)
...+...++.|++....|.+...|..+++||+++..+.-+....
T Consensus 322 a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~------------------------------------ 365 (1080)
T KOG1408|consen 322 AIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSM------------------------------------ 365 (1080)
T ss_pred ccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeee------------------------------------
Confidence 11122347889998999999999999999999775322111000
Q ss_pred CCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCC
Q 001184 710 SPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNG 789 (1130)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 789 (1130)
.-....+|++....... |... + +.-|.+ .++++++|+
T Consensus 366 ---------------------------lyHS~ciW~Ve~~p~nv------------~~~~--~-aclp~~-cF~TCSsD~ 402 (1080)
T KOG1408|consen 366 ---------------------------LYHSACIWDVENLPCNV------------HSPT--A-ACLPRG-CFTTCSSDG 402 (1080)
T ss_pred ---------------------------eeccceeeeeccccccc------------cCcc--c-ccCCcc-ceeEecCCC
Confidence 00123445544321100 0000 0 001111 255666666
Q ss_pred eEEeeecCCCCCCCC--ccccccc---------ccc-cccCCCCcceecc-CCCCCCCceeEEEEecCCCEEEEEe-CCe
Q 001184 790 VQKLWKWNRTEQNPS--GKATAAV---------APQ-HWQPSNGLLMTND-VPENAEDVVPCVALSKNDSYVMSAG-GGK 855 (1130)
Q Consensus 790 ~i~iw~~~~~~~~~~--~~~~~~~---------~~~-~w~~~~~~~~~~~-~~~~~~~~i~~l~~s~dg~~la~~~-dg~ 855 (1130)
+|++|++........ ..+.... ..+ +.|...+..-... -.-.....++++++||+|++||+|. .|+
T Consensus 403 TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gn 482 (1080)
T KOG1408|consen 403 TIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGN 482 (1080)
T ss_pred cEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCc
Confidence 666666554211000 0000000 000 0111111000000 0013567899999999999999999 799
Q ss_pred EEEEECCCceeEEEEeCCCCCeEEEEEeCC--CCcEEEEEeCCCcEEEEEeec-CeEEEEEecCCCCeeEEEEccCC--C
Q 001184 856 VSLFNMMNFKVMTTFMSPPPASTFLAFHPQ--DNNIIAIGMEDSTIQIYNVRV-DEVKTKLKGHQKHITGLAFSTNL--N 930 (1130)
Q Consensus 856 i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~--~~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~~s~dg--~ 930 (1130)
++||++...+....++.|..+|.|+.|+.- ..++||+++.|..|+|||+.. ..+++++.+|+..|+++.|.-.| .
T Consensus 483 lrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~ 562 (1080)
T KOG1408|consen 483 LRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNR 562 (1080)
T ss_pred eEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCce
Confidence 999999999999999999999999999852 457999999999999999974 46788999999999999998887 7
Q ss_pred eEEEEeCCCcEEEEECCCCcccceeeEeccCCCC---CCCeEEEEEcCCCcEEEE-EcCCcEEEEECCCceeeeeeecCC
Q 001184 931 ILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKL---PVGETRVQFHSDQVRLLV-NHETQLAIYDGSKMECIRQWVPQD 1006 (1130)
Q Consensus 931 ~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~ 1006 (1130)
.++++|.|+.|++--....... ...+.+++ ...+..++..|..+++++ +.|+.|+||++..|+..+.|.+.+
T Consensus 563 ~MiscGADksimFr~~qk~~~g----~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~ 638 (1080)
T KOG1408|consen 563 KMISCGADKSIMFRVNQKASSG----RLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSR 638 (1080)
T ss_pred EEEeccCchhhheehhccccCc----eeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccc
Confidence 8999999998766443321111 11122221 156788999999999888 789999999999999999999999
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCc
Q 001184 1007 VLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGS 1086 (1130)
Q Consensus 1007 ~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~ 1086 (1130)
.|.+...-+...|.|-|||+.+.|+++.++|+-+|++.++.. ||+..++.+.|.+ |-..|++.+.||.
T Consensus 639 ~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~-----------GHsE~VTG~kF~n-DCkHlISvsgDgC 706 (1080)
T KOG1408|consen 639 DHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT-----------GHSEAVTGVKFLN-DCKHLISVSGDGC 706 (1080)
T ss_pred cCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc-----------Ccchheeeeeecc-cchhheeecCCce
Confidence 988888899999999999999999999999999999998886 5667788899998 4678999999999
Q ss_pred EEEEeCCC
Q 001184 1087 VKVIEPSE 1094 (1130)
Q Consensus 1087 v~vW~~~~ 1094 (1130)
|+||.++.
T Consensus 707 IFvW~lp~ 714 (1080)
T KOG1408|consen 707 IFVWKLPL 714 (1080)
T ss_pred EEEEECch
Confidence 99999974
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=338.07 Aligned_cols=301 Identities=20% Similarity=0.322 Sum_probs=256.6
Q ss_pred cceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeee-ec----CCCccE
Q 001184 338 RAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAI-VK----DSSISV 412 (1130)
Q Consensus 338 ~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~h~~~V 412 (1130)
....+.+.|+.+|.+++|+|-..-++++|+.|-..++|++....-..... ..+++.+ +. .....|
T Consensus 169 ~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q----------~~lrh~~~~~~~s~~~nkdV 238 (524)
T KOG0273|consen 169 SSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQ----------LVLRHCIREGGKSVPSNKDV 238 (524)
T ss_pred ccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchh----------hhhhhhhhhhcccCCccCCc
Confidence 34555667999999999999877679999999999999987411111000 0000000 11 123579
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeee
Q 001184 413 SRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLF 491 (1130)
Q Consensus 413 ~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~ 491 (1130)
++++|+.+|..||+|+.||.+++|+..++. +. ++..|.++|.++.|+.+|. +|++++.|+++.+|| .+|....
T Consensus 239 T~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 239 TSLDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred ceEEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEE
Confidence 999999999999999999999999987753 32 6888999999999999999 899999999999999 8999999
Q ss_pred EecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEE
Q 001184 492 QFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1130)
Q Consensus 492 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1130)
.+.-|..+-..+.|.. ...+++.+.|+.|+++.+....+..++.+|..+|.++.|+|.|.+|++++. |++++|
T Consensus 313 ~f~~~s~~~lDVdW~~---~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~Tlki 385 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQS---NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTLKI 385 (524)
T ss_pred eeeeccCCccceEEec---CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCeeEe
Confidence 9999999877777743 257999999999999999999999999999999999999999999999986 999999
Q ss_pred eeCCCCceeEEEecccCceeEEEEEcCCCC---------EEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcC
Q 001184 572 WNESEGALKRTYIGFRKKSAGVVQFDTTRN---------RILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1130)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~ 642 (1130)
|..........+.+|.. .|..+.|+|+|. .+++++.|++|++||+..+.++..+..|.. +|++++|+|
T Consensus 386 Ws~~~~~~~~~l~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~--pVysvafS~ 462 (524)
T KOG0273|consen 386 WSMGQSNSVHDLQAHSK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE--PVYSVAFSP 462 (524)
T ss_pred eecCCCcchhhhhhhcc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC--ceEEEEecC
Confidence 99999989999999877 788889999763 789999999999999999999999876655 899999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCC
Q 001184 643 EGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+|+++|+|+.||.|.+|+..++
T Consensus 463 ~g~ylAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 463 NGRYLASGSLDGCVHIWSTKTG 484 (524)
T ss_pred CCcEEEecCCCCeeEeccccch
Confidence 9999999999999999998776
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=337.44 Aligned_cols=584 Identities=15% Similarity=0.170 Sum_probs=438.6
Q ss_pred EEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCe
Q 001184 353 MDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHL 432 (1130)
Q Consensus 353 v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~ 432 (1130)
..|..-|..++++.+.+.++.+||.+.-..+. +-+.+...|+|++=..+--|.|+| ..
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~-------------------vs~~lp~~I~alas~~~~vy~A~g---~~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLF-------------------VSKPLPDKITALASDKDYVYVASG---NK 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEE-------------------ecCCCCCceEEEEecCceEEEecC---cE
Confidence 66666677788999999999999998776664 234677889999877665444443 34
Q ss_pred EEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCC-Ce----eeEecCCCcCEEEEeec
Q 001184 433 IHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG-RK----LFQFEGHEAPVYSVCPH 506 (1130)
Q Consensus 433 i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~-~~----~~~~~~h~~~v~~~~~~ 506 (1130)
|.+|. .|+.++ ..+.+|.+.|.-+.-- |. .++++..++.+.||+ ..+ .. +..++...+.|+++. |
T Consensus 97 i~~~~--rgk~i~--~~~~~~~a~v~~l~~f--Ge--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYA--RGKHIR--HTTLLHGAKVHLLLPF--GE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEE--ccceEE--EEeccccceEEEEeee--cc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 66664 344343 3466777777766543 55 689999999999999 442 11 112223333377775 6
Q ss_pred ccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecc
Q 001184 507 QKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGF 586 (1130)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1130)
|+.--+.++.|+.+|.+.+|++++++.+.++......|+++.-+|-=..++.|.. +|+|.+++++.++.+.+|+..
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEEEEcc
Confidence 7766678999999999999999999999999999999999999998888998875 999999999999999999864
Q ss_pred cCceeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 001184 587 RKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGL 665 (1130)
Q Consensus 587 ~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 665 (1130)
.+.|+.++|..||+ .+++|+..|.+-+||++..+.+..+.. .|.+.+....|-|....+++++.|+.+++|-.+++.
T Consensus 244 -~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~n-ah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~d 321 (910)
T KOG1539|consen 244 -WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRN-AHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGD 321 (910)
T ss_pred -ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeec-cccCCcccceecCCCceEeeccCCCceeEEEeeCCC
Confidence 45899999999997 555677779999999999888777652 223478999999999999999999999999776542
Q ss_pred hhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCcccee
Q 001184 666 RALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWE 745 (1130)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~ 745 (1130)
...+.+.
T Consensus 322 g~pR~LR------------------------------------------------------------------------- 328 (910)
T KOG1539|consen 322 GVPRLLR------------------------------------------------------------------------- 328 (910)
T ss_pred Ccchhee-------------------------------------------------------------------------
Confidence 1111110
Q ss_pred eccccCCcceeEEEecCCCCCccceEEEEEe-ccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcce
Q 001184 746 LTEIVDPLQCRVVAMPESTDSASKVARLLYT-NSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLM 824 (1130)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 824 (1130)
...+|..+..++.|- .+|..+..++.|++++.+++....++..-.. ......++..
T Consensus 329 ----------------~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~-------~~~~~~~kk~ 385 (910)
T KOG1539|consen 329 ----------------SRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ-------LHNKKRAKKV 385 (910)
T ss_pred ----------------eccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc-------cccccccccc
Confidence 013477777777776 6788899999999988887655433221110 1111111111
Q ss_pred ecc-CCCCCCCceeEEEEecC-----CCEEEEE-eCCeEEEEECCCcee-EEEEe-----CCCCCeEEEEEeCCCCcEEE
Q 001184 825 TND-VPENAEDVVPCVALSKN-----DSYVMSA-GGGKVSLFNMMNFKV-MTTFM-----SPPPASTFLAFHPQDNNIIA 891 (1130)
Q Consensus 825 ~~~-~~~~~~~~i~~l~~s~d-----g~~la~~-~dg~i~iwd~~~~~~-~~~~~-----~~~~~i~~l~~sp~~~~~la 891 (1130)
... ...-.-.+|..+++... ...+++. ++...+.|+...... ...+. .....+++++.++ .|++.+
T Consensus 386 ~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~ 464 (910)
T KOG1539|consen 386 NVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVF 464 (910)
T ss_pred cccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEE
Confidence 000 00012345666666432 2233333 257799999987654 22232 2336799999999 999999
Q ss_pred EEeCCCcEEEEEeecCeEEEEE---ecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCe
Q 001184 892 IGMEDSTIQIYNVRVDEVKTKL---KGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGE 968 (1130)
Q Consensus 892 sg~~dg~v~iwd~~~~~~~~~l---~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v 968 (1130)
.|+..|.|-+|++++|-....+ +.|.++|++++...-++.+++++.+|-+++||.+........ .....+
T Consensus 465 IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l-------~l~~~~ 537 (910)
T KOG1539|consen 465 IGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSL-------RLGSSI 537 (910)
T ss_pred EeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeee-------ccCCCc
Confidence 9999999999999999988888 589999999999888899999999999999999985522221 122677
Q ss_pred EEEEEcCCCcEEEE-EcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCccccccc
Q 001184 969 TRVQFHSDQVRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRI 1047 (1130)
Q Consensus 969 ~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~ 1047 (1130)
..+..+.....+++ .+|-.|+++|..+.+.++.+.+| ...|++++|||||++|++++.|++||+||+.++.++..+
T Consensus 538 ~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh---~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~ 614 (910)
T KOG1539|consen 538 TGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH---GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL 614 (910)
T ss_pred ceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcc---ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE
Confidence 88888888777776 67889999999999999999888 789999999999999999999999999999999998777
Q ss_pred CCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCC-CcEEEEeCC
Q 001184 1048 APSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTD-GSVKVIEPS 1093 (1130)
Q Consensus 1048 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D-g~v~vW~~~ 1093 (1130)
... ..++.+.|+|+ +++|+|+..| .-|.+|.=.
T Consensus 615 ~vd------------~~~~sls~SPn-gD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 615 LVD------------SPCTSLSFSPN-GDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred ecC------------CcceeeEECCC-CCEEEEEEecCceEEEEEch
Confidence 532 34677999995 8999999998 569999743
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=335.90 Aligned_cols=603 Identities=15% Similarity=0.208 Sum_probs=404.6
Q ss_pred ccccCCCCCcccccCCcccceeeec-cCCCCEEEEEEecCCC--eEEEEEeCcCeEEEEeCCCCceeecccceeeecccc
Q 001184 320 ATYPVPSQQATWSLDDLPRAVACTM-HQGSSVVSMDFHPFHH--TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNC 396 (1130)
Q Consensus 320 ~~~s~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~fspdg~--~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 396 (1130)
++|.....++++.+... .+...+ +|..+|+|+.|-|+.+ -.+++|+.|+.|++|.++....+..
T Consensus 28 vafGa~~~Iav~dp~k~--~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i----------- 94 (764)
T KOG1063|consen 28 VAFGAGPAIAVADPEKI--LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKI----------- 94 (764)
T ss_pred EEecCCceEEEeCcccc--eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEE-----------
Confidence 66666666777766654 344444 6999999999999886 1389999999999999984333321
Q ss_pred ccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccc-eeeeeeecCCCCeeEEEEecCCCceEEEEEc
Q 001184 397 SMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDL-CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG 475 (1130)
Q Consensus 397 ~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~-~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s 475 (1130)
..+.+|... +++++.......+...|+++.+||.+..+.. .....+..-..--.|+++.++.+..+++.|+
T Consensus 95 ------~~~~g~~~~--~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Gg 166 (764)
T KOG1063|consen 95 ------YTIQGHCKE--CVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGG 166 (764)
T ss_pred ------EeecCccee--EEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecC
Confidence 134566544 4455544334444478999999999554411 1111122222234567777855555777888
Q ss_pred CCCcEEEEe-cCC--CeeeEecCCCcCEEEEeecccCC-ccEEEEEecCCcEEEEEccCCc-------------------
Q 001184 476 DDKLIRVWD-LSG--RKLFQFEGHEAPVYSVCPHQKEN-IHFIFSTAVDGKIKAWLYDNVG------------------- 532 (1130)
Q Consensus 476 ~d~~v~iwd-~~~--~~~~~~~~h~~~v~~~~~~~~~~-~~~l~s~s~dg~i~vwd~~~~~------------------- 532 (1130)
.+..|.++. ..+ +.+..+.||.+.|.+++|..... .-+|+++|.|..||+|.+.-..
T Consensus 167 s~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~ 246 (764)
T KOG1063|consen 167 SKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPV 246 (764)
T ss_pred cceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCce
Confidence 888888888 433 45678899999999999975544 5688999999999999765332
Q ss_pred -----ce-------eeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCC--ceeEEEe----cccCceeEEE
Q 001184 533 -----SR-------VDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG--ALKRTYI----GFRKKSAGVV 594 (1130)
Q Consensus 533 -----~~-------~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~----~~~~~~v~~~ 594 (1130)
.. ..+.+|..+|+++.|.|.+..|++++. |.++.+|...+. --+.... ++........
T Consensus 247 f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~ 322 (764)
T KOG1063|consen 247 FMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGG 322 (764)
T ss_pred eeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheeccc----CcceEEEecCCccceEEEEEEeecccccccceeeE
Confidence 00 013478889999999999999999886 899999987554 2222211 2233356778
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCC-CCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcc
Q 001184 595 QFDTTRNRILAAGEDNQIKFWDMD-NVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIET 673 (1130)
Q Consensus 595 ~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 673 (1130)
.|+|+++.+++-+..|..++|... ...........+|...|..++|+|.|.+|.+.+.|.+-|++---..+.....+
T Consensus 323 lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEi-- 400 (764)
T KOG1063|consen 323 LWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEI-- 400 (764)
T ss_pred EEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeee--
Confidence 899999999999999999999833 33344444445677799999999999999999999999998643111111111
Q ss_pred cccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCc
Q 001184 674 RAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPL 753 (1130)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~ 753 (1130)
.++
T Consensus 401 -----aRP------------------------------------------------------------------------ 403 (764)
T KOG1063|consen 401 -----ARP------------------------------------------------------------------------ 403 (764)
T ss_pred -----ccc------------------------------------------------------------------------
Confidence 000
Q ss_pred ceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCC----------------CCCC--------------
Q 001184 754 QCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRT----------------EQNP-------------- 803 (1130)
Q Consensus 754 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~----------------~~~~-------------- 803 (1130)
+.|...++++++-+....++++.....+|+|+.... ...+
T Consensus 404 ----------QiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa 473 (764)
T KOG1063|consen 404 ----------QIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKA 473 (764)
T ss_pred ----------ccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCC
Confidence 113333333444333333333333344444433221 0000
Q ss_pred -------Cccc--------ccccccccccCCCCc-ceecc------CCCCCCCceeEEEEecCCCEEEEEe-C-----Ce
Q 001184 804 -------SGKA--------TAAVAPQHWQPSNGL-LMTND------VPENAEDVVPCVALSKNDSYVMSAG-G-----GK 855 (1130)
Q Consensus 804 -------~~~~--------~~~~~~~~w~~~~~~-~~~~~------~~~~~~~~i~~l~~s~dg~~la~~~-d-----g~ 855 (1130)
.|.. .......+..+.... +.... ..-+|...|.+++.+|+|+++|+++ . ..
T Consensus 474 ~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAv 553 (764)
T KOG1063|consen 474 FFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAV 553 (764)
T ss_pred CcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceE
Confidence 0000 000000111111111 11110 0118999999999999999999986 1 34
Q ss_pred EEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeE----EEEEecCCCCeeEEEEccCCCe
Q 001184 856 VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV----KTKLKGHQKHITGLAFSTNLNI 931 (1130)
Q Consensus 856 i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~----~~~l~~h~~~V~~l~~s~dg~~ 931 (1130)
|++|+..+...+..+.+|.-.|+.++||| |+++|++.+.|+++.+|....... ....+.|+.-|++..|+||+.+
T Consensus 554 I~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~ 632 (764)
T KOG1063|consen 554 IRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKY 632 (764)
T ss_pred EEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccce
Confidence 99999999999999999999999999999 899999999999999999864421 2347789999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCC----Cc-EEEEE-cCCcEEEEECC---------Cc
Q 001184 932 LVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSD----QV-RLLVN-HETQLAIYDGS---------KM 996 (1130)
Q Consensus 932 L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d----~~-~l~~~-~d~~i~v~d~~---------~~ 996 (1130)
++|+|.|++|++|........... +.........++.+++.|- .. .++++ ..|.|.+|... +.
T Consensus 633 FaTaSRDK~VkVW~~~~~~d~~i~--~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~ 710 (764)
T KOG1063|consen 633 FATASRDKKVKVWEEPDLRDKYIS--RFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTF 710 (764)
T ss_pred eEEecCCceEEEEeccCchhhhhh--hhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceee
Confidence 999999999999999886311111 1122233478888888762 23 45555 58999999855 12
Q ss_pred eeeeeeecCCCCCCCeEEEEECCC----------CCEEEEEeCCCcEEEEeCC
Q 001184 997 ECIRQWVPQDVLSSPISSAAYSCN----------SQLIYATFTDGSIGVFDAD 1039 (1130)
Q Consensus 997 ~~~~~~~~~~~~~~~v~~v~~s~d----------g~~l~t~~~Dg~i~vwd~~ 1039 (1130)
.....+....+|...|+.++|+|- ...|++|++|..+|++++.
T Consensus 711 ~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 711 NLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred eeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 223334445566789999999974 2367999999999999874
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=328.60 Aligned_cols=595 Identities=15% Similarity=0.193 Sum_probs=413.6
Q ss_pred EEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCC---EEEEEeC
Q 001184 353 MDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN---FIGVAFT 429 (1130)
Q Consensus 353 v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~---~las~~~ 429 (1130)
..|.|.+ ++|.|. ...|.+||..+..... .+.||.++|+|+.|-|+.+ ++++|+.
T Consensus 20 ~sw~~~~--~vafGa-~~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~s 77 (764)
T KOG1063|consen 20 SSWGPGG--LVAFGA-GPAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGDS 77 (764)
T ss_pred ccccccc--eEEecC-CceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEccC
Confidence 3456665 356554 5689999987653322 5889999999999999888 8999999
Q ss_pred CCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCe---eeEecCCCcCE--EEEe
Q 001184 430 KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRK---LFQFEGHEAPV--YSVC 504 (1130)
Q Consensus 430 d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~---~~~~~~h~~~v--~~~~ 504 (1130)
|+.|++|.++. +.+.....+.+|...+.+ +..... .....+.|+++.+||..+.. ...+.-..+.+ .|++
T Consensus 78 D~~v~lW~l~~-~~~~~i~~~~g~~~~~~c--v~a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~ 152 (764)
T KOG1063|consen 78 DGRVILWKLRD-EYLIKIYTIQGHCKECVC--VVARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLA 152 (764)
T ss_pred CCcEEEEEEee-hheEEEEeecCcceeEEE--EEeeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHh
Confidence 99999999984 335556677877655544 443322 22223789999999954433 22232222233 3444
Q ss_pred ecccCCccEEEEEecCCcEEEEEccCC--cceeeecCCCccEEEEEEecCCC---eEEEeeecCCCCcEEEEeeCCCCc-
Q 001184 505 PHQKENIHFIFSTAVDGKIKAWLYDNV--GSRVDYDAPGLWCTTMLYSADGS---RLFSCGTSKEGDSHLVEWNESEGA- 578 (1130)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~~~~~~~~i~~wd~~~~~- 578 (1130)
+.+.++.-+++.|+.+..|.++.-... .....+.+|..+|.+++|...+. +|++++. |..|++|.+.-+.
T Consensus 153 ~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQ----D~yIRiW~i~~~~~ 228 (764)
T KOG1063|consen 153 ALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQ----DRYIRIWRIVLGDD 228 (764)
T ss_pred hhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCC----ceEEEEEEEEecCC
Confidence 555444445667777788888855432 34557899999999999987555 4555553 8999999864322
Q ss_pred --------------------eeEE----------EecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--eeEEE
Q 001184 579 --------------------LKRT----------YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN--MLTST 626 (1130)
Q Consensus 579 --------------------~~~~----------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~ 626 (1130)
.... +.||.+ .|.++.|+|.+..|++++.|.++.+|...... -+...
T Consensus 229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~v 307 (764)
T KOG1063|consen 229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVV 307 (764)
T ss_pred ccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEE
Confidence 1111 236655 89999999999999999999999999876542 22222
Q ss_pred ec---cCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccc
Q 001184 627 EA---EGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKA 703 (1130)
Q Consensus 627 ~~---~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 703 (1130)
.. .+.......+.|+|+++.+++-+..|..++|...+.
T Consensus 308 RlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~--------------------------------------- 348 (764)
T KOG1063|consen 308 RLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDK--------------------------------------- 348 (764)
T ss_pred EeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCc---------------------------------------
Confidence 21 122335788999999999999999999999983221
Q ss_pred cccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEE
Q 001184 704 ERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGIL 783 (1130)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~ 783 (1130)
..|... +...+|...|..++|.|.|.+++
T Consensus 349 --------------------------------------~~w~~~-------------~~iSGH~~~V~dv~W~psGeflL 377 (764)
T KOG1063|consen 349 --------------------------------------TFWTQE-------------PVISGHVDGVKDVDWDPSGEFLL 377 (764)
T ss_pred --------------------------------------cceeec-------------cccccccccceeeeecCCCCEEE
Confidence 011110 11145889999999999999999
Q ss_pred EeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeC-CeEEEEECC
Q 001184 784 ALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGG-GKVSLFNMM 862 (1130)
Q Consensus 784 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~d-g~i~iwd~~ 862 (1130)
+++.|.+-|+|---. + .+-|. ..-.+.-|...++|+++-+....+++|.| ..+|+|+..
T Consensus 378 svs~DQTTRlFa~wg-------~------q~~wH-------EiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aP 437 (764)
T KOG1063|consen 378 SVSLDQTTRLFARWG-------R------QQEWH-------EIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAP 437 (764)
T ss_pred Eeccccceeeecccc-------c------cccee-------eecccccccccceeeehccCCceeeecccceeeeeecCc
Confidence 999999999873210 0 00011 11122358889999999886566667664 668888764
Q ss_pred -------------------------------------------Cce---------------------------------e
Q 001184 863 -------------------------------------------NFK---------------------------------V 866 (1130)
Q Consensus 863 -------------------------------------------~~~---------------------------------~ 866 (1130)
+|. .
T Consensus 438 k~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPE 517 (764)
T KOG1063|consen 438 KSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPE 517 (764)
T ss_pred HHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchh
Confidence 000 0
Q ss_pred EEEEeCCCCCeEEEEEeCCCCcEEEEEeCCC-----cEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcE
Q 001184 867 MTTFMSPPPASTFLAFHPQDNNIIAIGMEDS-----TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQL 941 (1130)
Q Consensus 867 ~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg-----~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i 941 (1130)
+..+.+|...|.+++.+| +++++|+++... .|++|+..+...++.+.+|+-.|+.|+|||||++|++++.|.++
T Consensus 518 v~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~ 596 (764)
T KOG1063|consen 518 VHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTV 596 (764)
T ss_pred hHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceE
Confidence 122346788899999999 999999998654 59999999999899999999999999999999999999999999
Q ss_pred EEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE-EcCCcEEEEECCCc--eeeeeeecCCCCCCCeEEEEEC
Q 001184 942 IFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGSKM--ECIRQWVPQDVLSSPISSAAYS 1018 (1130)
Q Consensus 942 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~v~~v~~s 1018 (1130)
.+|........... ... ...|..-|....|+|++.++++ +.|++|.+|..... +.+..+.. ..++.+|++++|.
T Consensus 597 sl~~~~~~~~~e~~-fa~-~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~-~~~~~aVTAv~~~ 673 (764)
T KOG1063|consen 597 SLYEVQEDIKDEFR-FAC-LKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFAC-LKFSLAVTAVAYL 673 (764)
T ss_pred Eeeeeecccchhhh-hcc-ccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhch-hccCCceeeEEee
Confidence 99998654332222 111 2223356888999999998887 68999999999887 55555422 2347899999998
Q ss_pred C-----CCCEEEEEeCCCcEEEEeCCCcccccccCCCcccc-cCCCCCceeeeEEEEEcCC---------CCCEEEEEeC
Q 001184 1019 C-----NSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMS-QASPNSQTVFPLVVTSHPQ---------EPNQLAVGLT 1083 (1130)
Q Consensus 1019 ~-----dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------~~~~l~s~~~ 1083 (1130)
| .+..+++|-+.|.|.+|....-..........+.. .....++...+..++|.|. +...|++|++
T Consensus 674 ~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~ 753 (764)
T KOG1063|consen 674 PVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGD 753 (764)
T ss_pred ccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecc
Confidence 7 22377888899999999865222111111111111 0111234455667888875 2346799999
Q ss_pred CCcEEEEeCC
Q 001184 1084 DGSVKVIEPS 1093 (1130)
Q Consensus 1084 Dg~v~vW~~~ 1093 (1130)
|..++++++.
T Consensus 754 D~~vri~nv~ 763 (764)
T KOG1063|consen 754 DESVRIFNVD 763 (764)
T ss_pred cceeEEeecc
Confidence 9999999875
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=333.38 Aligned_cols=283 Identities=17% Similarity=0.260 Sum_probs=264.3
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC--C
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD--G 421 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd--g 421 (1130)
++...+|..+.||+|++ +||||+-+|.++||+..++..+. ++.||.+.|.++.|+|. +
T Consensus 172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~-------------------~l~gH~~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQ-------------------TLRGHTSRVGAAVFHPVDSD 231 (459)
T ss_pred ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeE-------------------EEeccccceeeEEEccCCCc
Confidence 45778999999999998 69999999999999999886654 68899999999999996 6
Q ss_pred CEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCE
Q 001184 422 NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPV 500 (1130)
Q Consensus 422 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v 500 (1130)
..+|+|+.||++++|++.+...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++|| .++..+....||...|
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v 306 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV 306 (459)
T ss_pred cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence 799999999999999999876555 6899999999999999999 899999999999999 8888888999999999
Q ss_pred EEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCcee
Q 001184 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK 580 (1130)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1130)
.+++|++ ||.+++||+.|..-+|||++++.+++.+.+|..+|.+|.|+|+|..|++|+. |++++|||++..+.+
T Consensus 307 ~~iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~l 380 (459)
T KOG0272|consen 307 FSIAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSEL 380 (459)
T ss_pred ceeEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeecccccc
Confidence 9999965 5689999999999999999999999999999999999999999999999986 999999999999999
Q ss_pred EEEecccCceeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEE
Q 001184 581 RTYIGFRKKSAGVVQFDT-TRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659 (1130)
Q Consensus 581 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw 659 (1130)
.++.+|.+ .|..|+|+| .|.+|++++.|++++||...+..+++++.+|.. .|.++.+++|+.++++++.|+++++|
T Consensus 381 y~ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 381 YTIPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIKLW 457 (459)
T ss_pred eecccccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceeeec
Confidence 99999877 899999998 678999999999999999999999999988766 89999999999999999999999999
Q ss_pred E
Q 001184 660 A 660 (1130)
Q Consensus 660 ~ 660 (1130)
.
T Consensus 458 ~ 458 (459)
T KOG0272|consen 458 R 458 (459)
T ss_pred c
Confidence 5
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=335.30 Aligned_cols=594 Identities=13% Similarity=0.174 Sum_probs=387.2
Q ss_pred ccccCCCCCcccccCCcccceeeecc-CCCCEEEEEEecCCCeEEEEEe--CcCeEEEEeCCCCceeecccceeeecccc
Q 001184 320 ATYPVPSQQATWSLDDLPRAVACTMH-QGSSVVSMDFHPFHHTLLVVGC--GDGEITLWDVGLRERLVSKPFKIWDMSNC 396 (1130)
Q Consensus 320 ~~~s~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~v~fspdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 396 (1130)
++|+++..++.+.++.-+. .+.+. |...++|+||||+|+| +|+|- ....++||++.....+.
T Consensus 52 ~aYpAGCvVVlfn~~~~tQ--~hlvnssRk~~t~vAfS~~Gry-vatGEcG~~pa~kVw~la~h~vVA------------ 116 (1080)
T KOG1408|consen 52 CAYPAGCVVVLFNVDSCTQ--SHLVNSSRKPLTCVAFSQNGRY-VATGECGRTPASKVWSLAFHGVVA------------ 116 (1080)
T ss_pred eeeccCcEEEEEcccccch--hheecccCcceeEEEEcCCCcE-EEecccCCCccceeeeeccccchh------------
Confidence 5666666677777765332 33333 7779999999999995 89885 55679999998877655
Q ss_pred ccceeeeeecCCCccEEEEEEcCCCCEEEEEeC--CCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEE
Q 001184 397 SMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFT--KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTC 474 (1130)
Q Consensus 397 ~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~--d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~ 474 (1130)
.+..|+-.|+|++|+|.++|+++.+. |-.|.+||.+...... -..-...|.+++|+.||. +++|.
T Consensus 117 -------EfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~ 183 (1080)
T KOG1408|consen 117 -------EFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTS 183 (1080)
T ss_pred -------hhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeee
Confidence 36689999999999999999998765 4577889876543222 223456799999999999 78887
Q ss_pred cCCCcEEEEecCCCe-ee---EecCCCcCEEEEeecccCCccEEEEE-------------ecCCcEEEEEccCCcceeee
Q 001184 475 GDDKLIRVWDLSGRK-LF---QFEGHEAPVYSVCPHQKENIHFIFST-------------AVDGKIKAWLYDNVGSRVDY 537 (1130)
Q Consensus 475 s~d~~v~iwd~~~~~-~~---~~~~h~~~v~~~~~~~~~~~~~l~s~-------------s~dg~i~vwd~~~~~~~~~~ 537 (1130)
+ ...|++|.+.+.. .. .|.+...-.-.+.+ ..+++.+ +..|.+.-|.-+..-... .
T Consensus 184 g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~-----n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKW-V 256 (1080)
T KOG1408|consen 184 G-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRF-----NEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKW-V 256 (1080)
T ss_pred e-eeeEEEEEeeccccccCCccccchhhhcccccc-----chhhhhhhcCcccccceEEEecccceeeechhhhhhhh-h
Confidence 6 5789999943332 11 11121111111111 0112211 122333222111000000 0
Q ss_pred cCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEeccc--------------------C---ceeEEE
Q 001184 538 DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR--------------------K---KSAGVV 594 (1130)
Q Consensus 538 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~--------------------~---~~v~~~ 594 (1130)
.......+|++.+ .++++++.. +|.|++++..+-....++...+ . ...-++
T Consensus 257 qcRTTnAnCIcVs--~r~I~cgCa----~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~ 330 (1080)
T KOG1408|consen 257 QCRTTNANCICVS--SRLIACGCA----KGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIAC 330 (1080)
T ss_pred hhhccccceeeee--cceEEEeec----cceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEE
Confidence 0112223455554 568888876 9999999987755443332111 0 022347
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCceeEEE-eccCCCCCcceEEEcC------C-----CCEEEEEeCCCcEEEEEcC
Q 001184 595 QFDTTRNRILAAGEDNQIKFWDMDNVNMLTST-EAEGGLPSLPRLRFNK------E-----GNLLVVTTADQGIKILANA 662 (1130)
Q Consensus 595 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~i~~v~~s~------~-----~~~l~~~~~dg~i~iw~~~ 662 (1130)
.|++....+.+.-.|..++|||++.-+.+... ..-.|...|+.+.--| . ...+.+++.|++||+|+++
T Consensus 331 ~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~ 410 (1080)
T KOG1408|consen 331 QFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLA 410 (1080)
T ss_pred EecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecc
Confidence 78988899999999999999999875433221 1111222333333222 0 2358899999999999987
Q ss_pred CCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCcc
Q 001184 663 DGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTK 742 (1130)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 742 (1130)
....- ..+..+ -++.+..+.-- .....+++- |...-
T Consensus 411 ~ctnn-~vyrRN--------------------ils~~l~ki~y-----~d~~~q~~~------------------d~~~~ 446 (1080)
T KOG1408|consen 411 FCTNN-QVYRRN--------------------ILSANLSKIPY-----EDSTQQIMH------------------DASAG 446 (1080)
T ss_pred ccccc-ceeecc--------------------cchhhhhcCcc-----ccCchhhhh------------------hccCC
Confidence 63110 010000 00111000000 000000000 00000
Q ss_pred ceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCc
Q 001184 743 PWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGL 822 (1130)
Q Consensus 743 ~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 822 (1130)
+++-.. .. .-+....+.+++++|+|+.|++|..-|++++|++..-..
T Consensus 447 ~fdka~---------~s---~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~--------------------- 493 (1080)
T KOG1408|consen 447 IFDKAL---------VS---TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY--------------------- 493 (1080)
T ss_pred cccccc---------hh---hcCcccceEEEEECCCcceecccCccCceEEEEehhhhh---------------------
Confidence 111000 00 012456789999999999999999999999998754211
Q ss_pred ceeccCCCCCCCceeEEEEec---CCCEEEEEe-CCeEEEEECCC-ceeEEEEeCCCCCeEEEEEeCCCC-cEEEEEeCC
Q 001184 823 LMTNDVPENAEDVVPCVALSK---NDSYVMSAG-GGKVSLFNMMN-FKVMTTFMSPPPASTFLAFHPQDN-NIIAIGMED 896 (1130)
Q Consensus 823 ~~~~~~~~~~~~~i~~l~~s~---dg~~la~~~-dg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~sp~~~-~~lasg~~d 896 (1130)
....+.|+.+|.|+.+|. ..++||+++ |.-|+|||+.. ..++.++.+|...|+++.|...++ ..+++++.|
T Consensus 494 ---~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGAD 570 (1080)
T KOG1408|consen 494 ---TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGAD 570 (1080)
T ss_pred ---hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCc
Confidence 112247999999999985 457899998 78899999864 567888999999999999988332 567788889
Q ss_pred CcEEEEEeecCeEEEEEecC-----CCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEE
Q 001184 897 STIQIYNVRVDEVKTKLKGH-----QKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRV 971 (1130)
Q Consensus 897 g~v~iwd~~~~~~~~~l~~h-----~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 971 (1130)
+.|.+--.+.......+..| ...+..|+..|..+++++++.|..|+||++++++..+.+.. ...+.+....+
T Consensus 571 ksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKg---s~~~eG~lIKv 647 (1080)
T KOG1408|consen 571 KSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKG---SRDHEGDLIKV 647 (1080)
T ss_pred hhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecc---cccCCCceEEE
Confidence 87765433321111222222 24588999999999999999999999999999887554432 22333677889
Q ss_pred EEcCCCcEEEE-EcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 001184 972 QFHSDQVRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS 1040 (1130)
Q Consensus 972 ~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~ 1040 (1130)
...|.|.|+++ +.|+++.++|..+|+++.+..+| +..|+.+.|++|.++|++.+.||.|.||.+..
T Consensus 648 ~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GH---sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 648 ILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGH---SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EECCCccEEEEeecCCceEEEEeccchhhhhhcCc---chheeeeeecccchhheeecCCceEEEEECch
Confidence 99999999999 58999999999999999998887 89999999999999999999999999999875
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-39 Score=304.81 Aligned_cols=292 Identities=23% Similarity=0.294 Sum_probs=255.5
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
+|.+.|+.++..+.+..++++++.|.++.+|++.......-. +...++||+..|..++.++||++.
T Consensus 13 gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~--------------~~r~~~GHsH~v~dv~~s~dg~~a 78 (315)
T KOG0279|consen 13 GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGV--------------PVRRLTGHSHFVSDVVLSSDGNFA 78 (315)
T ss_pred CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCc--------------eeeeeeccceEecceEEccCCceE
Confidence 499999999999998889999999999999999765332211 122588999999999999999999
Q ss_pred EEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCC--CcCEEE
Q 001184 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGH--EAPVYS 502 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h--~~~v~~ 502 (1130)
++++.|+++++||+.+|+..+ .|.||...|.+++|++|.+ .++||+.|++|++||.-|.+..++..+ .+.|.|
T Consensus 79 lS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVsc 153 (315)
T KOG0279|consen 79 LSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSC 153 (315)
T ss_pred EeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeecccEEEEEecCCCcCcEEE
Confidence 999999999999999996544 6889999999999999999 799999999999999888888888755 789999
Q ss_pred EeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEE
Q 001184 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582 (1130)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1130)
++|+|..+..+|++++.|++|++||+++.+....+.+|.+.++.++++|||...++|+. +|.+.+||+..++.+..
T Consensus 154 vrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk----dg~~~LwdL~~~k~lys 229 (315)
T KOG0279|consen 154 VRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK----DGEAMLWDLNEGKNLYS 229 (315)
T ss_pred EEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC----CceEEEEEccCCceeEe
Confidence 99999988899999999999999999999999999999999999999999999999986 99999999999999888
Q ss_pred EecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCC-------CCCcceEEEcCCCCEEEEEeCCCc
Q 001184 583 YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGG-------LPSLPRLRFNKEGNLLVVTTADQG 655 (1130)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-------~~~i~~v~~s~~~~~l~~~~~dg~ 655 (1130)
+.. ...|.+++|+|+. +.+++..+..|+|||++++..+..+..... .....+++|++||..|+.|..|+.
T Consensus 230 l~a--~~~v~sl~fspnr-ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~ 306 (315)
T KOG0279|consen 230 LEA--FDIVNSLCFSPNR-YWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNV 306 (315)
T ss_pred ccC--CCeEeeEEecCCc-eeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCc
Confidence 774 3389999999975 455555566799999999988877655421 223467899999999999999999
Q ss_pred EEEEEcC
Q 001184 656 IKILANA 662 (1130)
Q Consensus 656 i~iw~~~ 662 (1130)
|++|.+.
T Consensus 307 irv~qv~ 313 (315)
T KOG0279|consen 307 IRVWQVA 313 (315)
T ss_pred EEEEEee
Confidence 9999864
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-38 Score=299.55 Aligned_cols=289 Identities=18% Similarity=0.247 Sum_probs=261.7
Q ss_pred eec-cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC
Q 001184 342 CTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1130)
Q Consensus 342 ~~~-~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 420 (1130)
++| +|...|.++.|++|.++ +++++.||.+.|||.-+....+ .++-....|..+||+|.
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~-ivSaSqDGklIvWDs~TtnK~h-------------------aipl~s~WVMtCA~sPS 108 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRR-IVSASQDGKLIVWDSFTTNKVH-------------------AIPLPSSWVMTCAYSPS 108 (343)
T ss_pred EEecccccceeeeEecCCcCe-EEeeccCCeEEEEEccccccee-------------------EEecCceeEEEEEECCC
Confidence 455 59999999999999995 9999999999999998877665 24455779999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCC--c-cceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCC
Q 001184 421 GNFIGVAFTKHLIHLYTYQGS--N-DLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGH 496 (1130)
Q Consensus 421 g~~las~~~d~~i~vwd~~~~--~-~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h 496 (1130)
|+++|+|+-|....||++.+. + .......+.+|++.+.++.|.+|+. |+|++.|.+..+|| .+|+.+..|.||
T Consensus 109 g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~GH 185 (343)
T KOG0286|consen 109 GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFHGH 185 (343)
T ss_pred CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEecCC
Confidence 999999999999999999864 1 1344456899999999999999876 89999999999999 999999999999
Q ss_pred CcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC
Q 001184 497 EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE 576 (1130)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1130)
.+.|.++++.|+ +++.+++|+.|+..++||++.+.....+.+|...|++++|.|+|.-+++|+. |++.++||++.
T Consensus 186 ~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyDlRa 260 (343)
T KOG0286|consen 186 TGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYDLRA 260 (343)
T ss_pred cccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEeecC
Confidence 999999999875 6789999999999999999999999999999999999999999999999986 99999999999
Q ss_pred CceeEEEeccc-CceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCc
Q 001184 577 GALKRTYIGFR-KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQG 655 (1130)
Q Consensus 577 ~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~ 655 (1130)
.+.+..|.... ...+++++|+..|++|++|..|..+.+||.-.++.+..+.+|.. .|.++..+|||..+++|+-|.+
T Consensus 261 D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgSWDs~ 338 (343)
T KOG0286|consen 261 DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGSWDST 338 (343)
T ss_pred CcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecchhHh
Confidence 99888887432 23688999999999999999999999999999999999987766 8999999999999999999999
Q ss_pred EEEEE
Q 001184 656 IKILA 660 (1130)
Q Consensus 656 i~iw~ 660 (1130)
++||.
T Consensus 339 lriW~ 343 (343)
T KOG0286|consen 339 LRIWA 343 (343)
T ss_pred eeecC
Confidence 99994
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-37 Score=320.94 Aligned_cols=474 Identities=16% Similarity=0.251 Sum_probs=354.8
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
.|.++|.+|.|+|...+ +.++-.+|.|.|||.++...++. +.-..-+|.+..|-+--+++
T Consensus 11 ~rSdRVKsVd~HPtePw-~la~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfiaRknWi 70 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEPW-ILAALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIARKNWI 70 (794)
T ss_pred ccCCceeeeecCCCCce-EEEeeecCeeEEEecccceeeee-------------------eeecccchhhheeeeccceE
Confidence 38899999999999986 66677899999999999888763 33345689999999999999
Q ss_pred EEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCeeeEecCCCcCEEE
Q 001184 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPVYS 502 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~~~~~~h~~~v~~ 502 (1130)
++|++|..|+||+..+++.+. .+..|.+.|.+++.+|... +++|+|+|-+|++|| ..-.+.++|.||+..|.+
T Consensus 71 v~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMq 145 (794)
T KOG0276|consen 71 VTGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQ 145 (794)
T ss_pred EEecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEE
Confidence 999999999999999987554 7899999999999999998 899999999999999 444678899999999999
Q ss_pred EeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCC--CeEEEeeecCCCCcEEEEeeCCCCcee
Q 001184 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADG--SRLFSCGTSKEGDSHLVEWNESEGALK 580 (1130)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1130)
++|+|.+. +.+++++.|++|++|.+....+..++.+|...|+++.|-+-| .+|++++. |..+++||.++..++
T Consensus 146 v~fnPkD~-ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQtk~CV 220 (794)
T KOG0276|consen 146 VAFNPKDP-NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQTKSCV 220 (794)
T ss_pred EEecCCCc-cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecchHHHH
Confidence 99998654 789999999999999999999999999999999999998755 68999885 899999999999999
Q ss_pred EEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001184 581 RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1130)
Q Consensus 581 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~ 660 (1130)
+++.||.. .|..++|+|.-..+++|++||+++||+..+.+...++..... .+.+++..+.++.+++|.+.|.+.+ .
T Consensus 221 ~TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gle--RvW~I~~~k~~~~i~vG~Deg~i~v-~ 296 (794)
T KOG0276|consen 221 QTLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLE--RVWCIAAHKGDGKIAVGFDEGSVTV-K 296 (794)
T ss_pred HHhhcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCc--eEEEEeecCCCCeEEEeccCCcEEE-E
Confidence 99999887 899999999999999999999999999999888888776544 8999999998888999998888755 3
Q ss_pred cCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCC
Q 001184 661 NADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDK 740 (1130)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 740 (1130)
+..+.. .++-+..|
T Consensus 297 lgreeP-----------------------------------------------------------------~vsMd~~g- 310 (794)
T KOG0276|consen 297 LGREEP-----------------------------------------------------------------AVSMDSNG- 310 (794)
T ss_pred ccCCCC-----------------------------------------------------------------ceeecCCc-
Confidence 322200 00001111
Q ss_pred ccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCC
Q 001184 741 TKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSN 820 (1130)
Q Consensus 741 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~ 820 (1130)
--+|.... .|..+-. -+.+..+ ++..
T Consensus 311 KIiwa~~~--------------------ei~~~~~-------ks~~~~~---------------------------ev~D 336 (794)
T KOG0276|consen 311 KIIWAVHS--------------------EIQAVNL-------KSVGAQK---------------------------EVTD 336 (794)
T ss_pred cEEEEcCc--------------------eeeeeec-------eeccCcc---------------------------cccC
Confidence 11222111 1111100 0000000 1122
Q ss_pred CcceeccCCC--CCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCc
Q 001184 821 GLLMTNDVPE--NAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDST 898 (1130)
Q Consensus 821 ~~~~~~~~~~--~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~ 898 (1130)
|+.+...+.+ .-+-....++-||+|+++++++||.-.||..-..+. ...+.-....|++ +....|+-..++.
T Consensus 337 gErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~Rn-----K~fG~~~eFvw~~-dsne~avRes~~~ 410 (794)
T KOG0276|consen 337 GERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALRN-----KAFGSGLEFVWAA-DSNEFAVRESNGN 410 (794)
T ss_pred CccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehhh-----cccccceeEEEcC-CCCeEEEEecCCc
Confidence 2222211111 111223457889999999999999999987433221 1345567788999 7777888888899
Q ss_pred EEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCc
Q 001184 899 IQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV 978 (1130)
Q Consensus 899 v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 978 (1130)
|+++ +..+....+...-. +..+ -.|.+|.. ..++.+++||.++++..+... .....+.|+.+|.
T Consensus 411 vki~--knfke~ksi~~~~~---~e~i-~gg~Llg~-~ss~~~~fydW~~~~lVrrI~---------v~~k~v~w~d~g~ 474 (794)
T KOG0276|consen 411 VKIF--KNFKEHKSIRPDMS---AEGI-FGGPLLGV-RSSDFLCFYDWESGELVRRIE---------VTSKHVYWSDNGE 474 (794)
T ss_pred eEEE--ecceeccccccccc---eeee-cCCceEEE-EeCCeEEEEEcccceEEEEEe---------eccceeEEecCCC
Confidence 9998 55665555442111 1111 12444444 445679999999977654433 3345789999999
Q ss_pred EEEEEcCCcEEEEECC
Q 001184 979 RLLVNHETQLAIYDGS 994 (1130)
Q Consensus 979 ~l~~~~d~~i~v~d~~ 994 (1130)
+++.+.|...+++...
T Consensus 475 lVai~~d~Sfyil~~n 490 (794)
T KOG0276|consen 475 LVAIAGDDSFYILKFN 490 (794)
T ss_pred EEEEEecCceeEEEec
Confidence 9999888776666543
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-38 Score=340.49 Aligned_cols=277 Identities=21% Similarity=0.316 Sum_probs=239.4
Q ss_pred cccCCcccceeeecc-CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecc---cceee---------eccccc
Q 001184 331 WSLDDLPRAVACTMH-QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSK---PFKIW---------DMSNCS 397 (1130)
Q Consensus 331 ~~~~~~~~~~~~~~~-h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~---~~~~~---------~~~~~~ 397 (1130)
.+.+..|..+++++. -...|+|+.||+|++ +||.|-.|..|++|.+...++...+ .+.-- ++-+..
T Consensus 361 l~~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~ 439 (707)
T KOG0263|consen 361 LGRNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDD 439 (707)
T ss_pred cCCCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhcccc
Confidence 345667777888886 567999999999998 7999999999999999854322110 00000 111111
Q ss_pred cceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCC
Q 001184 398 MMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD 477 (1130)
Q Consensus 398 ~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d 477 (1130)
.......+.||.++|..+.|+||.++|++++.|++||+|.+.+..++. .+.||..+|+++.|+|-|- ++||+|.|
T Consensus 440 ~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D 514 (707)
T KOG0263|consen 440 SSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHD 514 (707)
T ss_pred CCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCC
Confidence 222333588999999999999999999999999999999999977654 6789999999999999998 89999999
Q ss_pred CcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeE
Q 001184 478 KLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRL 556 (1130)
Q Consensus 478 ~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1130)
++.++|. ....+++.+.+|-+.|.|+.|||+. .++++||.|.+||+||+.++..+..+.+|..+|.+++|+|+|++|
T Consensus 515 ~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~L 592 (707)
T KOG0263|consen 515 QTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYL 592 (707)
T ss_pred ceeeeeecccCCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceE
Confidence 9999999 8888999999999999999998755 799999999999999999999999999999999999999999999
Q ss_pred EEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 001184 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV 620 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 620 (1130)
++++. ++.|.+||+.++.++..+.+|. +.+.++.|+.+|..|++|+.|.+|++||+..-
T Consensus 593 aSg~e----d~~I~iWDl~~~~~v~~l~~Ht-~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 593 ASGDE----DGLIKIWDLANGSLVKQLKGHT-GTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred eeccc----CCcEEEEEcCCCcchhhhhccc-CceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99986 9999999999999999999994 48999999999999999999999999998653
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-39 Score=322.35 Aligned_cols=284 Identities=20% Similarity=0.306 Sum_probs=257.0
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-c
Q 001184 407 DSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-L 485 (1130)
Q Consensus 407 ~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~ 485 (1130)
+.+.+|..+.||+|++.||+|+.+|.++||+..+...+. ++.||...|.++.|+|......++||+.||++++|+ .
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 556789999999999999999999999999999875443 789999999999999984222799999999999999 5
Q ss_pred CCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCC
Q 001184 486 SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEG 565 (1130)
Q Consensus 486 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1130)
+..++..+.+|..+|..++|+|+ |++|+|++.|.+-++||+++........+|...|.+++|.+||..+++||.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHPs--G~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHPS--GKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecCC--CceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 55889999999999999999865 489999999999999999999999999999999999999999999999997
Q ss_pred CcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcC-CC
Q 001184 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK-EG 644 (1130)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~-~~ 644 (1130)
|..-++||+++|+++..+.+|.. .|..+.|+|+|-.+++|+.|++++|||++..+.+.++..|.. -|+.|.|+| .|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~~g 400 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQEG 400 (459)
T ss_pred cchhheeecccCcEEEEeccccc-ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEecccCC
Confidence 78889999999999999999776 899999999999999999999999999999999888887765 799999998 78
Q ss_pred CEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCcc
Q 001184 645 NLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSA 724 (1130)
Q Consensus 645 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1130)
.+|++++.|++++||...+. .+.+.+
T Consensus 401 ~fL~TasyD~t~kiWs~~~~-~~~ksL----------------------------------------------------- 426 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTW-SPLKSL----------------------------------------------------- 426 (459)
T ss_pred eEEEEcccCcceeeecCCCc-ccchhh-----------------------------------------------------
Confidence 99999999999999987665 333322
Q ss_pred ccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeee
Q 001184 725 ARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWK 795 (1130)
Q Consensus 725 ~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~ 795 (1130)
.+|.+.|.++.+++|+..+++++.|.++++|.
T Consensus 427 ---------------------------------------aGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 427 ---------------------------------------AGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ---------------------------------------cCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 34889999999999999999999999999994
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=320.88 Aligned_cols=562 Identities=13% Similarity=0.190 Sum_probs=408.3
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
+.+.|+|++=+.+- +++++ ...|.+|-. |+.+. +++.+|.+.|.-+. |=|.++.
T Consensus 75 lp~~I~alas~~~~---vy~A~-g~~i~~~~r--gk~i~------------------~~~~~~~a~v~~l~--~fGe~li 128 (910)
T KOG1539|consen 75 LPDKITALASDKDY---VYVAS-GNKIYAYAR--GKHIR------------------HTTLLHGAKVHLLL--PFGEHLI 128 (910)
T ss_pred CCCceEEEEecCce---EEEec-CcEEEEEEc--cceEE------------------EEeccccceEEEEe--eecceEE
Confidence 77899999876653 33333 236666653 44332 24667777776654 4578999
Q ss_pred EEeCCCeEEEEEecCC-cccee-eeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEE
Q 001184 426 VAFTKHLIHLYTYQGS-NDLCQ-SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYS 502 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~-~~~~~-~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~ 502 (1130)
++..++.+.||+..++ ..... ..-++.-.+.|+++. +|..---.++.|+.+|.+.+|+ .+++.++++.++...|++
T Consensus 129 a~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ 207 (910)
T KOG1539|consen 129 AVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITA 207 (910)
T ss_pred EEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeE
Confidence 9999999999999884 22111 111222223377664 3432111689999999999999 999999999999999999
Q ss_pred EeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEE
Q 001184 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582 (1130)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1130)
+.-+|.- ..++.|..+|+|.+++++..+.+..+....+.|++++|..||+.+.+.+. ..|.+.+||++..+.+..
T Consensus 208 ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---~~G~m~~wDLe~kkl~~v 282 (910)
T KOG1539|consen 208 IEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---SNGDMAFWDLEKKKLINV 282 (910)
T ss_pred eccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc---CCceEEEEEcCCCeeeee
Confidence 9765544 68999999999999999999999999887789999999999998877664 268999999999998888
Q ss_pred EecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc----eeEEEeccCCCCCcceEEEc-CCCCEEEEEeCCCcEE
Q 001184 583 YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN----MLTSTEAEGGLPSLPRLRFN-KEGNLLVVTTADQGIK 657 (1130)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~i~~v~~s-~~~~~l~~~~~dg~i~ 657 (1130)
....+.+.+....|.|....+++++.|+.+++|=.+++. .++.-. +|..+..++.|. .+|..+.+++.|++++
T Consensus 283 ~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~--GHs~Pp~~irfy~~~g~~ilsa~~Drt~r 360 (910)
T KOG1539|consen 283 TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRG--GHSAPPSCIRFYGSQGHFILSAKQDRTLR 360 (910)
T ss_pred eeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeecc--CCCCCchheeeeccCcEEEEecccCcchh
Confidence 876666678889999999999999999999888555432 233333 455578899987 6899999999999999
Q ss_pred EEEcCCCchhhhhhcccccccccccccccccccceeecccccccccccc-CCCCCCCCcccccCCCccccCCCCcccccc
Q 001184 658 ILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERV-DRSSPARPSTILNGADSAARGIEKPRNLED 736 (1130)
Q Consensus 658 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1130)
.+++.........-+.|... ..++.... .-....++...++..........+.+...-
T Consensus 361 ~fs~~~e~~~~~l~~~~~~~---------------------~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~ 419 (910)
T KOG1539|consen 361 SFSVISESQSQELGQLHNKK---------------------RAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHK 419 (910)
T ss_pred hhhhhHHHHhHhhccccccc---------------------ccccccccchhhhcCCcceeeecccchhhhhcceeEEec
Confidence 88875431111111111000 00000000 001111222233333333333444445555
Q ss_pred cCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccc
Q 001184 737 ISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHW 816 (1130)
Q Consensus 737 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w 816 (1130)
.+...+.|+.......... +.-.........+.+++.++.|+..+.|.+.|.|.+|++..+-..
T Consensus 420 ~~~~~~tW~~~n~~~G~~~--L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r-------------- 483 (910)
T KOG1539|consen 420 GKRSAYTWNFRNKTSGRHV--LDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHR-------------- 483 (910)
T ss_pred CcceEEEEeccCcccccEE--ecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeee--------------
Confidence 5567788887764321111 000001124577899999999999999999999999876553211
Q ss_pred cCCCCcceeccC-CCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEe
Q 001184 817 QPSNGLLMTNDV-PENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGM 894 (1130)
Q Consensus 817 ~~~~~~~~~~~~-~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~ 894 (1130)
.... ...|..+|+.++...-++.+++++ +|.+.+||......+..+.. ...++++..+. ...++|.+.
T Consensus 484 --------~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr-~s~l~a~~~ 553 (910)
T KOG1539|consen 484 --------KSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHR-VSDLLAIAL 553 (910)
T ss_pred --------cccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc-CCCcceeeeee-hhhhhhhhc
Confidence 1100 125899999999999999898887 99999999999988887763 45688888888 778999999
Q ss_pred CCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEc
Q 001184 895 EDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFH 974 (1130)
Q Consensus 895 ~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 974 (1130)
.|-.|+++|+.+.+.++.|.||.+.|++++|||||+||++++.|++|++||+.++......... .+.+.+.||
T Consensus 554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd-------~~~~sls~S 626 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD-------SPCTSLSFS 626 (910)
T ss_pred CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC-------CcceeeEEC
Confidence 9999999999999999999999999999999999999999999999999999998765444332 678999999
Q ss_pred CCCcEEEEEc--CCcEEEEECCC
Q 001184 975 SDQVRLLVNH--ETQLAIYDGSK 995 (1130)
Q Consensus 975 ~d~~~l~~~~--d~~i~v~d~~~ 995 (1130)
|+|.+||+.+ ...|++|.-..
T Consensus 627 PngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 627 PNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred CCCCEEEEEEecCceEEEEEchh
Confidence 9999999954 46799997653
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=316.05 Aligned_cols=558 Identities=17% Similarity=0.252 Sum_probs=390.9
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
...+|..++|+|...+ +.++-..|.|++||+.-+.++.. +.+|.++|..++|+|.+.+++
T Consensus 8 kSsRvKglsFHP~rPw-ILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFV 67 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPW-ILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFV 67 (1202)
T ss_pred ccccccceecCCCCCE-EEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEE
Confidence 5678999999999985 77888999999999998888763 779999999999999999999
Q ss_pred EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEe
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVC 504 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~ 504 (1130)
+|++|..|+||+.++.+|+. ++.||-+.|..+.|++.-. +++|+|+|.+|+||+ .+++++..+.||...|.|..
T Consensus 68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence 99999999999999987665 7899999999999999988 899999999999999 99999999999999999999
Q ss_pred ecccCCccEEEEEecCCcEEEEEccCCc---------------------------c--eeeecCCCccEEEEEEecCCCe
Q 001184 505 PHQKENIHFIFSTAVDGKIKAWLYDNVG---------------------------S--RVDYDAPGLWCTTMLYSADGSR 555 (1130)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~---------------------------~--~~~~~~~~~~v~~~~~s~~~~~ 555 (1130)
|+|.. ..++|+|.|.+||+||+...+ . ...+.+|...|+-++|.|.-..
T Consensus 143 FhptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl 220 (1202)
T KOG0292|consen 143 FHPTE--DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL 220 (1202)
T ss_pred cCCcc--ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcce
Confidence 99877 589999999999999975311 0 1245778889999999999999
Q ss_pred EEEeeecCCCCcEEEEeeCCCCce--eEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCC
Q 001184 556 LFSCGTSKEGDSHLVEWNESEGAL--KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLP 633 (1130)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 633 (1130)
+++|+. |..|++|....-+. +.+..||.+ .|.++-|+|..+.+++.|+|++|+|||+...+.+.++.....
T Consensus 221 iVSG~D----DRqVKlWrmnetKaWEvDtcrgH~n-nVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrend-- 293 (1202)
T KOG0292|consen 221 IVSGAD----DRQVKLWRMNETKAWEVDTCRGHYN-NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREND-- 293 (1202)
T ss_pred EEecCC----cceeeEEEeccccceeehhhhcccC-CcceEEecCccceeEecCCCccEEEEecccccceeeeeccCC--
Confidence 999985 89999999865543 456678776 899999999999999999999999999999999999876544
Q ss_pred CcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCC
Q 001184 634 SLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPAR 713 (1130)
Q Consensus 634 ~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~ 713 (1130)
....++.+|..++++.| .|+-+.+|.++.. +....+ +-
T Consensus 294 RFW~laahP~lNLfAAg-HDsGm~VFkleRE-rpa~~v-------------------------~~--------------- 331 (1202)
T KOG0292|consen 294 RFWILAAHPELNLFAAG-HDSGMIVFKLERE-RPAYAV-------------------------NG--------------- 331 (1202)
T ss_pred eEEEEEecCCcceeeee-cCCceEEEEEccc-CceEEE-------------------------cC---------------
Confidence 78999999999877766 5555667776543 111100 00
Q ss_pred CcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeee--CCeE
Q 001184 714 PSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWS--NGVQ 791 (1130)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~--dg~i 791 (1130)
+..+.+- |..++.+++.+.... ....+...........++.|+|....++.+++ +|..
T Consensus 332 ---------------n~LfYvk--d~~i~~~d~~t~~d~---~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y 391 (1202)
T KOG0292|consen 332 ---------------NGLFYVK--DRFIRSYDLRTQKDT---AVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEY 391 (1202)
T ss_pred ---------------CEEEEEc--cceEEeeeccccccc---eeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeE
Confidence 0111111 456666666552221 11122221224467788999998887776653 5666
Q ss_pred EeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEe
Q 001184 792 KLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFM 871 (1130)
Q Consensus 792 ~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~ 871 (1130)
.++.+......... + .... .......+-...++-.+..-++..+.+-++.+. ..+.+.
T Consensus 392 ~L~~ipk~~~~~~~---------------~----~~~~--k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~-vtkkl~ 449 (1202)
T KOG0292|consen 392 ELVQIPKDSDGVSD---------------G----KDVK--KGTGEGALFVARNRFAVLDKSNEQVVIKNLKNK-VTKKLL 449 (1202)
T ss_pred EEEEecCcccccCC---------------c----hhhh--cCCCCceEEEEecceEEEEecCcceEEecccch-hhhccc
Confidence 66655432110000 0 0000 111222222222222222222444555555432 222222
Q ss_pred CCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcc
Q 001184 872 SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEK 951 (1130)
Q Consensus 872 ~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~ 951 (1130)
.. ..+..+-+.- .|.+|+. ....|.+||++..+.+..++ ...|.-+.||+|..+++--+.. +|.|.+.+-.
T Consensus 450 ~~-~~~~~IF~ag-~g~lll~--~~~~v~lfdvQq~~~~~si~--~s~vkyvvws~dm~~vAll~Kh-~i~i~~kkL~-- 520 (1202)
T KOG0292|consen 450 LP-ESTDDIFYAG-TGNLLLR--SPDSVTLFDVQQKKKVGSIK--VSKVKYVVWSNDMSRVALLSKH-TITIADKKLE-- 520 (1202)
T ss_pred Cc-ccccceeecc-CccEEEE--cCCeEEEEEeecceEEEEEe--cCceeEEEEcCccchhhhcccc-eEEEEecchh--
Confidence 11 2233444444 5665543 34569999999988887776 4678899999999888877654 6888876541
Q ss_pred cceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCC
Q 001184 952 RKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG 1031 (1130)
Q Consensus 952 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg 1031 (1130)
. ....+....|.+-+|..+|-++.+..+.--+-..-.+...++++ ..+++-... .|+.+++-..|+
T Consensus 521 ---l---~~sihEtiriksgawde~gVfiYtT~nHikYal~~GD~GIikTL------d~~iyitkv--~gn~V~cl~rd~ 586 (1202)
T KOG0292|consen 521 ---L---LCSIHETIRIKSGAWDEDGVFIYTTLNHIKYALENGDSGIIKTL------DKPIYITKV--KGNKVFCLNRDG 586 (1202)
T ss_pred ---h---eecchheeEeeeceeccCceEEEEehhhhhhhhccCCcceEEec------ccceEEEEe--eCCEEEEEecCC
Confidence 1 12223346788889999998888754432222221223334444 234544444 477888888899
Q ss_pred cEEEEeCCCcccc
Q 001184 1032 SIGVFDADSLRLR 1044 (1130)
Q Consensus 1032 ~i~vwd~~~~~~~ 1044 (1130)
.+.+.+++..+..
T Consensus 587 ~~~~~~IDptEy~ 599 (1202)
T KOG0292|consen 587 EIECLTIDPTEYR 599 (1202)
T ss_pred CeEEEeechHHHH
Confidence 9999988865443
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=288.65 Aligned_cols=285 Identities=17% Similarity=0.234 Sum_probs=256.8
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
+++||.+.|.++.|++|+++|++++.||.+.|||.-+..... .+.-....|..++|+|.|+ +++.|+-|+...||
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIY 124 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEE
Confidence 688999999999999999999999999999999998866443 4556678999999999999 89999999999999
Q ss_pred ecC-C------CeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEec-CCCe
Q 001184 484 DLS-G------RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSA-DGSR 555 (1130)
Q Consensus 484 d~~-~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~ 555 (1130)
+.+ . +..+.+.+|++.+.++.|.. ...|++++.|.+..+||+++++....+.+|...|.++.++| +++.
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~d---D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLD---DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcC---CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 933 2 34567899999999999854 35799999999999999999999999999999999999999 9999
Q ss_pred EEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCc
Q 001184 556 LFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSL 635 (1130)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i 635 (1130)
+++++. |+..++||++.+..+++|.+|.. .|++++|.|+|.-+++|++|++.++||++..+.+..+.......+|
T Consensus 202 FvSg~c----D~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gi 276 (343)
T KOG0286|consen 202 FVSGGC----DKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGI 276 (343)
T ss_pred EEeccc----ccceeeeeccCcceeEeeccccc-ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCc
Confidence 999997 89999999999999999999876 8999999999999999999999999999999999999888878899
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCc
Q 001184 636 PRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPS 715 (1130)
Q Consensus 636 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~ 715 (1130)
++++||..|++|+.|..|.++.+||.-.+.+ ...
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~e~-vg~--------------------------------------------- 310 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKGER-VGV--------------------------------------------- 310 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeeccccce-EEE---------------------------------------------
Confidence 9999999999999999999999999654411 000
Q ss_pred ccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEee
Q 001184 716 TILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLW 794 (1130)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw 794 (1130)
+ .+|.++|.++..+|||..+++++.|.+++||
T Consensus 311 --------------------------------------------L---~GHeNRvScl~~s~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 311 --------------------------------------------L---AGHENRVSCLGVSPDGMAVATGSWDSTLRIW 342 (343)
T ss_pred --------------------------------------------e---eccCCeeEEEEECCCCcEEEecchhHheeec
Confidence 0 2499999999999999999999999999999
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-35 Score=305.49 Aligned_cols=465 Identities=17% Similarity=0.232 Sum_probs=351.6
Q ss_pred ecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001184 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1130)
Q Consensus 405 ~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd 484 (1130)
+..++..|.++.|+|...+++++-.+|.|.|||.++...++ .+.-..-+|.+..|-+.-+ ++++|++|..|+||+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 44588999999999999999999999999999999977665 5667788999999998888 899999999999999
Q ss_pred -cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCc-ceeeecCCCccEEEEEEec-CCCeEEEeee
Q 001184 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG-SRVDYDAPGLWCTTMLYSA-DGSRLFSCGT 561 (1130)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 561 (1130)
.+++.++.|..|...|.+++.||.. .+++|+|+|-+|++||.+..- +..++.+|.+.|++++|+| |.+.+++++-
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 9999999999999999999999866 799999999999999998754 5668999999999999999 6778999987
Q ss_pred cCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEE
Q 001184 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTR--NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLR 639 (1130)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~ 639 (1130)
|++|++|.+.+..+..++.+|.. .|+|+.+-+.| .++++|++|..++|||..+..+++++.+|.+ .|..+.
T Consensus 162 ----DrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~ 234 (794)
T KOG0276|consen 162 ----DRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSFVF 234 (794)
T ss_pred ----cccEEEEEcCCCCCceeeecccc-CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceEEE
Confidence 99999999999999999999877 89999998755 5999999999999999999999999998876 799999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCccccc
Q 001184 640 FNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILN 719 (1130)
Q Consensus 640 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~ 719 (1130)
|+|.-.++++|+.||+++||+..+- +....+.
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn----------------------------------------------- 266 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSKTY-KLEKTLN----------------------------------------------- 266 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCcce-ehhhhhh-----------------------------------------------
Confidence 9999999999999999999986543 1111110
Q ss_pred CCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCC
Q 001184 720 GADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRT 799 (1130)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~ 799 (1130)
..-.++.+++..+.+..+++|.++|.+.+= +
T Consensus 267 ---------------------------------------------~gleRvW~I~~~k~~~~i~vG~Deg~i~v~-l--- 297 (794)
T KOG0276|consen 267 ---------------------------------------------YGLERVWCIAAHKGDGKIAVGFDEGSVTVK-L--- 297 (794)
T ss_pred ---------------------------------------------cCCceEEEEeecCCCCeEEEeccCCcEEEE-c---
Confidence 023456666666777778888887777541 1
Q ss_pred CCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeC--CeEEEE------ECCCceeEE---
Q 001184 800 EQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGG--GKVSLF------NMMNFKVMT--- 868 (1130)
Q Consensus 800 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~d--g~i~iw------d~~~~~~~~--- 868 (1130)
......+.+++.|+.+-+... -.+.+- ++..|+.+.
T Consensus 298 ---------------------------------greeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~Lsv 344 (794)
T KOG0276|consen 298 ---------------------------------GREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSV 344 (794)
T ss_pred ---------------------------------cCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchh
Confidence 112223444555554433221 111111 223333221
Q ss_pred -EEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECC
Q 001184 869 -TFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTD 947 (1130)
Q Consensus 869 -~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~ 947 (1130)
.+..-.-....++-+| +|++++++ .||.-.||..-..+ ..+.+.-....|++|.+..++-..++.|+++ +
T Consensus 345 KeLgs~eiyPq~L~hsP-NGrfV~Vc-gdGEyiIyTala~R-----nK~fG~~~eFvw~~dsne~avRes~~~vki~--k 415 (794)
T KOG0276|consen 345 KELGSVEIYPQTLAHSP-NGRFVVVC-GDGEYIIYTALALR-----NKAFGSGLEFVWAADSNEFAVRESNGNVKIF--K 415 (794)
T ss_pred hhccccccchHHhccCC-CCcEEEEe-cCccEEEEEeeehh-----hcccccceeEEEcCCCCeEEEEecCCceEEE--e
Confidence 1111111234578899 88877765 58888888743221 1234556678899998888888888889988 4
Q ss_pred CCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEE
Q 001184 948 TWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYAT 1027 (1130)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~ 1027 (1130)
+.+..+..... .....--.|.+|.+..++.+++||.+++..++.+... ...+.|+-+|.+++.+
T Consensus 416 nfke~ksi~~~----------~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v~------~k~v~w~d~g~lVai~ 479 (794)
T KOG0276|consen 416 NFKEHKSIRPD----------MSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEVT------SKHVYWSDNGELVAIA 479 (794)
T ss_pred cceeccccccc----------cceeeecCCceEEEEeCCeEEEEEcccceEEEEEeec------cceeEEecCCCEEEEE
Confidence 44432222111 1122223456677788999999999999999988654 4578999999999988
Q ss_pred eCCCcEEEEeCC
Q 001184 1028 FTDGSIGVFDAD 1039 (1130)
Q Consensus 1028 ~~Dg~i~vwd~~ 1039 (1130)
+.| ..+|+.+.
T Consensus 480 ~d~-Sfyil~~n 490 (794)
T KOG0276|consen 480 GDD-SFYILKFN 490 (794)
T ss_pred ecC-ceeEEEec
Confidence 854 44555443
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=277.87 Aligned_cols=284 Identities=17% Similarity=0.273 Sum_probs=238.7
Q ss_pred eEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecC
Q 001184 361 TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQG 440 (1130)
Q Consensus 361 ~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~ 440 (1130)
-+||+++.|.+||+|...+|.+.+ ++....+.|..+...||++.||+++.. .|++||+.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~r-------------------Tiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S 70 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSR-------------------TIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNS 70 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEE-------------------EEecCccceeeEEEcCCcchhhhccCC-eeEEEEccC
Confidence 489999999999999999999987 355667889999999999999999764 699999999
Q ss_pred CccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCCCcCEEEEeecccCCccEEEEEecC
Q 001184 441 SNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD 520 (1130)
Q Consensus 441 ~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d 520 (1130)
++.- +..++.+|+..|+++.|..||+ +++|||+||+++|||...........|..+|+++..+|.. ..|++|..+
T Consensus 71 ~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQ--teLis~dqs 145 (311)
T KOG0315|consen 71 NNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQ--TELISGDQS 145 (311)
T ss_pred CCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCc--ceEEeecCC
Confidence 8754 5668999999999999999999 8999999999999994434444444588999999998755 679999999
Q ss_pred CcEEEEEccCCcceeeec-CCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc------eeEEEecccCceeEE
Q 001184 521 GKIKAWLYDNVGSRVDYD-APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA------LKRTYIGFRKKSAGV 593 (1130)
Q Consensus 521 g~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~------~~~~~~~~~~~~v~~ 593 (1130)
|.|++||+.+..+...+. .....|.++...|||.+++.+.. .|..++|++-+.+ ++..++.|.. -+..
T Consensus 146 g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~~-~il~ 220 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHNG-HILR 220 (311)
T ss_pred CcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheecccc-eEEE
Confidence 999999999876665443 34458999999999999999865 8999999986643 4556777665 6777
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcc
Q 001184 594 VQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIET 673 (1130)
Q Consensus 594 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 673 (1130)
+.+||++++|++++.|.+++||+.++. ....+...++...+..++||.||++|++++.|+.+++|++..+ +..+...+
T Consensus 221 C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~-k~v~qy~g 298 (311)
T KOG0315|consen 221 CLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG-KEVRQYQG 298 (311)
T ss_pred EEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC-ceeeecCC
Confidence 889999999999999999999999988 3344444455568999999999999999999999999999988 55566666
Q ss_pred ccc
Q 001184 674 RAY 676 (1130)
Q Consensus 674 ~~~ 676 (1130)
|..
T Consensus 299 h~K 301 (311)
T KOG0315|consen 299 HHK 301 (311)
T ss_pred ccc
Confidence 543
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=285.37 Aligned_cols=524 Identities=16% Similarity=0.199 Sum_probs=379.8
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCC--------cEEEEe-
Q 001184 414 RVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK--------LIRVWD- 484 (1130)
Q Consensus 414 ~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~--------~v~iwd- 484 (1130)
.+-+-|.|..+.... +.+.+++.+...+- -+.+|+..|.|++.+||-- .+++|-.-| .|++||
T Consensus 70 Nly~lptgE~vyfvA--~V~Vl~n~ee~~Qr----~y~GH~ddikc~~vHPdri--~vatGQ~ag~~g~~~~phvriWds 141 (626)
T KOG2106|consen 70 NLYLLPTGELVYFVA--AVGVLYNWEERSQR----HYLGHNDDIKCMAVHPDRI--RVATGQGAGTSGRPLQPHVRIWDS 141 (626)
T ss_pred eeEEccCccEEEEec--cEEEEEeehhhhcc----cccCCCCceEEEeecCCce--eeccCcccccCCCcCCCeeeeccc
Confidence 466778887665432 35667777653211 3679999999999999876 566654443 599999
Q ss_pred cCCCeeeEecCCCcCEEEEeecccCCccEEEEE--ecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCC-eEEEeee
Q 001184 485 LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFST--AVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGS-RLFSCGT 561 (1130)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~--s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~ 561 (1130)
.+-..++.+......|.+++|++...|.++... +.+..+.+||...+............+....|.|.+. .+++++
T Consensus 142 v~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G- 220 (626)
T KOG2106|consen 142 VTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG- 220 (626)
T ss_pred ccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC-
Confidence 888888888888889999999998887777665 4566789999998888877777788899999999655 455554
Q ss_pred cCCCCcEEEEeeCCCCceeE---EEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceE
Q 001184 562 SKEGDSHLVEWNESEGALKR---TYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1130)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v 638 (1130)
.+.++.|+.+.+.+.+ .+..+....|.|++|.++|. +++|..+|.|.||+..+.+..+.... |.+.|.++
T Consensus 221 ----k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~a--H~ggv~~L 293 (626)
T KOG2106|consen 221 ----KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHA--HDGGVFSL 293 (626)
T ss_pred ----CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeee--cCCceEEE
Confidence 8999999999886654 45555566899999999875 78999999999999988777776664 44589999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccc
Q 001184 639 RFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTIL 718 (1130)
Q Consensus 639 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~ 718 (1130)
+.-.+|.+|- |+.|+.|..||- ..+..+..+-
T Consensus 294 ~~lr~GtllS-GgKDRki~~Wd~--~y~k~r~~el--------------------------------------------- 325 (626)
T KOG2106|consen 294 CMLRDGTLLS-GGKDRKIILWDD--NYRKLRETEL--------------------------------------------- 325 (626)
T ss_pred EEecCccEee-cCccceEEeccc--cccccccccC---------------------------------------------
Confidence 9999997665 999999999992 2122221111
Q ss_pred cCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCC
Q 001184 719 NGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNR 798 (1130)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~ 798 (1130)
|+ ..+.|..++-. +.-++++..-+.|..=.+
T Consensus 326 ------------------------------------------Pe---~~G~iRtv~e~--~~di~vGTtrN~iL~Gt~-- 356 (626)
T KOG2106|consen 326 ------------------------------------------PE---QFGPIRTVAEG--KGDILVGTTRNFILQGTL-- 356 (626)
T ss_pred ------------------------------------------ch---hcCCeeEEecC--CCcEEEeeccceEEEeee--
Confidence 00 11222222211 111444444333322111
Q ss_pred CCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCe
Q 001184 799 TEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPAS 877 (1130)
Q Consensus 799 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i 877 (1130)
+++.-+. ..+|......++..|+...+++++ |+.+++|+ ..++..+.. ...++
T Consensus 357 --------------------~~~f~~~---v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~ 410 (626)
T KOG2106|consen 357 --------------------ENGFTLT---VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPA 410 (626)
T ss_pred --------------------cCCceEE---EEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCce
Confidence 1111111 116888999999999999999888 99999999 444444433 35678
Q ss_pred EEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeE
Q 001184 878 TFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAI 957 (1130)
Q Consensus 878 ~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~ 957 (1130)
.|+.|+| .+ .+|.|+..|...+.|.++..++..-.. ..++++++|+|||.+||.++.|+.|++|.++.+........
T Consensus 411 ~~~~fhp-sg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~ 487 (626)
T KOG2106|consen 411 ECADFHP-SG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG 487 (626)
T ss_pred eEeeccC-cc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEee
Confidence 9999999 67 999999999999999999766655554 88999999999999999999999999999987654332222
Q ss_pred eccCCCCCCCeEEEEEcCCCcEEEE-EcCCcEEEEECCCceeeee--------------e-ecCCCCCCCeEEEEECCCC
Q 001184 958 QLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGSKMECIRQ--------------W-VPQDVLSSPISSAAYSCNS 1021 (1130)
Q Consensus 958 ~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~--------------~-~~~~~~~~~v~~v~~s~dg 1021 (1130)
. .+...++.+.||+|++++.+ +.|..|..|....-..+.. + .....++..|..++-+.++
T Consensus 488 k----~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~ 563 (626)
T KOG2106|consen 488 K----CSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCE 563 (626)
T ss_pred e----ecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhh
Confidence 2 12278999999999999998 6788999995432221111 1 1113456788888999999
Q ss_pred CEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 001184 1022 QLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEP 1092 (1130)
Q Consensus 1022 ~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~ 1092 (1130)
+++|+|.+.|.|++|...--+..+.+ |.| -+|+..+.+++|...+. .|++.+.|.+|..|++
T Consensus 564 ~~lA~gdd~g~v~lf~yPc~s~rA~~--he~------~ghs~~vt~V~Fl~~d~-~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 564 KLLASGDDFGKVHLFSYPCSSPRAPS--HEY------GGHSSHVTNVAFLCKDS-HLISTGKDTSIMQWRL 625 (626)
T ss_pred hhhhccccCceEEEEccccCCCcccc--eee------ccccceeEEEEEeeCCc-eEEecCCCceEEEEEe
Confidence 99999999999999998765544332 232 24555667788877655 5555559999999987
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=292.54 Aligned_cols=291 Identities=21% Similarity=0.339 Sum_probs=265.3
Q ss_pred cceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEE
Q 001184 338 RAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1130)
Q Consensus 338 ~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 417 (1130)
....+..+|...|+.+-|+|+-. ++++++.|++|++||..+|++.. .++||...|..++|
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~-------------------~LrGHt~sv~di~~ 158 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELER-------------------SLRGHTDSVFDISF 158 (406)
T ss_pred CchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhh-------------------hhhccccceeEEEE
Confidence 34455567999999999999986 79999999999999999999865 48899999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCC
Q 001184 418 SPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGH 496 (1130)
Q Consensus 418 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h 496 (1130)
+..|++||+++.|-.+++||.++- .+....+.+|...|.+++|-|-|. ++++++.|.+|+.|+ .+|.++++|.+|
T Consensus 159 ~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h 234 (406)
T KOG0295|consen 159 DASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGH 234 (406)
T ss_pred ecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCc
Confidence 999999999999999999999873 233346789999999999999998 899999999999999 999999999999
Q ss_pred CcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecC---------------CCeEEEeee
Q 001184 497 EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSAD---------------GSRLFSCGT 561 (1130)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~---------------~~~l~~~~~ 561 (1130)
...|..+.. ..||.++++++.|.++++|-+.+.++...+..|..+|.+++|.|. +.++.+++.
T Consensus 235 ~ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr 312 (406)
T KOG0295|consen 235 SEWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR 312 (406)
T ss_pred hHhEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc
Confidence 999999877 578899999999999999999999999999999999999999764 246777765
Q ss_pred cCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEc
Q 001184 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN 641 (1130)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s 641 (1130)
|++|++||+.++.++.++.+|.+ .|..++|+|.|+||+++.+|+++++||+.++++...+..+.+ -++++.|+
T Consensus 313 ----DktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--fvt~lDfh 385 (406)
T KOG0295|consen 313 ----DKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLDFH 385 (406)
T ss_pred ----cceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--eeEEEecC
Confidence 99999999999999999999877 899999999999999999999999999999999999998877 68999999
Q ss_pred CCCCEEEEEeCCCcEEEEEc
Q 001184 642 KEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 642 ~~~~~l~~~~~dg~i~iw~~ 661 (1130)
.+..++++|+-|.++++|..
T Consensus 386 ~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 386 KTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCCceEEeccccceeeeeec
Confidence 99999999999999999974
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=302.14 Aligned_cols=480 Identities=18% Similarity=0.270 Sum_probs=350.5
Q ss_pred ecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001184 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1130)
Q Consensus 405 ~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd 484 (1130)
+...+..|..++|+|...+++++-..|.|.+||.+-+.++. .+..|.++|..++|+|.+. +++|||+|-.|++|+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 34456789999999999999999999999999999988776 6889999999999999999 999999999999999
Q ss_pred -cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecC
Q 001184 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1130)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1130)
.+.+++.++.||-+.|..+.||+.- .+++|+|+|.+|+||++.+.+++..+.+|.+.|+|..|.|....+++++-
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-- 155 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-- 155 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence 8999999999999999999998654 79999999999999999999999999999999999999999999999997
Q ss_pred CCCcEEEEeeCCCCc-----------------------------eeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEE
Q 001184 564 EGDSHLVEWNESEGA-----------------------------LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKF 614 (1130)
Q Consensus 564 ~~~~~i~~wd~~~~~-----------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 614 (1130)
|.+|++||+..-+ ....+.||.. .|+-++|+|.-..|++|++|+.|++
T Consensus 156 --DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR-GVNwaAfhpTlpliVSG~DDRqVKl 232 (1202)
T KOG0292|consen 156 --DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR-GVNWAAFHPTLPLIVSGADDRQVKL 232 (1202)
T ss_pred --cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc-ccceEEecCCcceEEecCCcceeeE
Confidence 8999999985211 1234566555 7899999999999999999999999
Q ss_pred EeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceee
Q 001184 615 WDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVT 694 (1130)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1130)
|.+..-+.-..-...+|...|.++-|+|...++++.+.|++|++||+.... .++.+.
T Consensus 233 WrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt-~v~tfr---------------------- 289 (1202)
T KOG0292|consen 233 WRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT-SVQTFR---------------------- 289 (1202)
T ss_pred EEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccc-ceeeee----------------------
Confidence 999876655444445666689999999999999999999999999986651 111110
Q ss_pred ccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEE
Q 001184 695 TITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLL 774 (1130)
Q Consensus 695 ~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 774 (1130)
....+...++
T Consensus 290 ----------------------------------------------------------------------rendRFW~la 299 (1202)
T KOG0292|consen 290 ----------------------------------------------------------------------RENDRFWILA 299 (1202)
T ss_pred ----------------------------------------------------------------------ccCCeEEEEE
Confidence 0234556677
Q ss_pred EeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCC
Q 001184 775 YTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGG 854 (1130)
Q Consensus 775 ~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg 854 (1130)
..|..+.+++ +.|+-+.+|.++. +.++.++ .+..|...-+.
T Consensus 300 ahP~lNLfAA-gHDsGm~VFkleR----------------------------------Erpa~~v----~~n~LfYvkd~ 340 (1202)
T KOG0292|consen 300 AHPELNLFAA-GHDSGMIVFKLER----------------------------------ERPAYAV----NGNGLFYVKDR 340 (1202)
T ss_pred ecCCcceeee-ecCCceEEEEEcc----------------------------------cCceEEE----cCCEEEEEccc
Confidence 7888875555 4555555665432 3333333 23344444588
Q ss_pred eEEEEECCCceeEE--EEeCC---CCCeEEEEEeCCCCcEEEEEeCC-CcEEEEEeecCeEE-----EEEecCCCCeeEE
Q 001184 855 KVSLFNMMNFKVMT--TFMSP---PPASTFLAFHPQDNNIIAIGMED-STIQIYNVRVDEVK-----TKLKGHQKHITGL 923 (1130)
Q Consensus 855 ~i~iwd~~~~~~~~--~~~~~---~~~i~~l~~sp~~~~~lasg~~d-g~v~iwd~~~~~~~-----~~l~~h~~~V~~l 923 (1130)
.|+-+|+.+.+-.. .++.. ..+..++.++|..+..+++...| |...++.+...... ...++ ....++
T Consensus 341 ~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~--tG~~a~ 418 (1202)
T KOG0292|consen 341 FIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKG--TGEGAL 418 (1202)
T ss_pred eEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcC--CCCceE
Confidence 99999998854433 33332 35788999999555555554433 44555555432110 01111 112222
Q ss_pred EEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeee
Q 001184 924 AFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWV 1003 (1130)
Q Consensus 924 ~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~ 1003 (1130)
-.+ ..++.+---.+..+.+-++.+..... +. .+.....+.+..+|.+|+. +...|.+||+.....+..+.
T Consensus 419 fva-rNrfavl~k~~~~v~ik~l~N~vtkk---l~-----~~~~~~~IF~ag~g~lll~-~~~~v~lfdvQq~~~~~si~ 488 (1202)
T KOG0292|consen 419 FVA-RNRFAVLDKSNEQVVIKNLKNKVTKK---LL-----LPESTDDIFYAGTGNLLLR-SPDSVTLFDVQQKKKVGSIK 488 (1202)
T ss_pred EEE-ecceEEEEecCcceEEecccchhhhc---cc-----CcccccceeeccCccEEEE-cCCeEEEEEeecceEEEEEe
Confidence 222 22233323335566666666522111 11 1134556777777766654 55689999999998888876
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCccccccc
Q 001184 1004 PQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRI 1047 (1130)
Q Consensus 1004 ~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~ 1047 (1130)
.. .|..++||+|+.+++.-+ -.+|.|.+.. .+.++.+
T Consensus 489 ~s-----~vkyvvws~dm~~vAll~-Kh~i~i~~kk-L~l~~si 525 (1202)
T KOG0292|consen 489 VS-----KVKYVVWSNDMSRVALLS-KHTITIADKK-LELLCSI 525 (1202)
T ss_pred cC-----ceeEEEEcCccchhhhcc-cceEEEEecc-hhheecc
Confidence 54 899999999999888777 5678888743 3344443
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=268.02 Aligned_cols=296 Identities=15% Similarity=0.242 Sum_probs=253.0
Q ss_pred ccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc--eeEEEecccC
Q 001184 511 IHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA--LKRTYIGFRK 588 (1130)
Q Consensus 511 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~ 588 (1130)
.-+|++++.|.+||+|...++.+..++......|+.+.+.|+++.|++++ ...|++||++++. ++.+|.+|..
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~k 84 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHTK 84 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccCC
Confidence 35899999999999999999999999999999999999999999999997 6789999998865 5889999877
Q ss_pred ceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhh
Q 001184 589 KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRAL 668 (1130)
Q Consensus 589 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 668 (1130)
.|.++.|..+|+++++|++||+++|||++...+.+.+... .+|+++..+|+...|++|..+|.|++||+.... ..
T Consensus 85 -NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~dqsg~irvWDl~~~~-c~ 159 (311)
T KOG0315|consen 85 -NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGDQSGNIRVWDLGENS-CT 159 (311)
T ss_pred -ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeecCCCcEEEEEccCCc-cc
Confidence 7999999999999999999999999999996666666543 489999999999999999999999999997661 11
Q ss_pred hhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeecc
Q 001184 669 RAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTE 748 (1130)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~ 748 (1130)
.. +
T Consensus 160 ~~-------------------------l---------------------------------------------------- 162 (311)
T KOG0315|consen 160 HE-------------------------L---------------------------------------------------- 162 (311)
T ss_pred cc-------------------------c----------------------------------------------------
Confidence 10 0
Q ss_pred ccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccC
Q 001184 749 IVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDV 828 (1130)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 828 (1130)
+| +....|.++.+.|||..++++.+.|...+|++....... .+.....
T Consensus 163 -----------iP---e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s------------------~l~P~~k 210 (311)
T KOG0315|consen 163 -----------IP---EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTAS------------------ELEPVHK 210 (311)
T ss_pred -----------CC---CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccc------------------cceEhhh
Confidence 11 144678899999999999999999999999976522111 1111111
Q ss_pred CCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCc-eeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeec
Q 001184 829 PENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNF-KVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV 906 (1130)
Q Consensus 829 ~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 906 (1130)
...|.+.+..+.+|||+++||+++ |.+++||+.++. +....+.+|...+...+||. |+.+|++|+.|+.+++|++..
T Consensus 211 ~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 211 FQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSA 289 (311)
T ss_pred eecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeeccccc
Confidence 236899999999999999999998 899999999998 66677889999999999999 999999999999999999999
Q ss_pred CeEEEEEecCCCCeeEEEEc
Q 001184 907 DEVKTKLKGHQKHITGLAFS 926 (1130)
Q Consensus 907 ~~~~~~l~~h~~~V~~l~~s 926 (1130)
++.+....+|.....|++..
T Consensus 290 ~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 290 GKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred CceeeecCCcccccEEEEee
Confidence 99999999999988888764
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-32 Score=277.46 Aligned_cols=526 Identities=17% Similarity=0.246 Sum_probs=380.8
Q ss_pred EEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCC
Q 001184 351 VSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTK 430 (1130)
Q Consensus 351 ~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d 430 (1130)
..+-+-|.|..+..++ +.+.+++++..... .+.+|...|.|++.+||.-.+|+|-..
T Consensus 69 ~Nly~lptgE~vyfvA---~V~Vl~n~ee~~Qr--------------------~y~GH~ddikc~~vHPdri~vatGQ~a 125 (626)
T KOG2106|consen 69 NNLYLLPTGELVYFVA---AVGVLYNWEERSQR--------------------HYLGHNDDIKCMAVHPDRIRVATGQGA 125 (626)
T ss_pred ceeEEccCccEEEEec---cEEEEEeehhhhcc--------------------cccCCCCceEEEeecCCceeeccCccc
Confidence 3455667776333333 25677777543322 367999999999999999999987443
Q ss_pred C--------eEEEEEecCCccceeeeeeecCCCCeeEEEEecCC--CceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcC
Q 001184 431 H--------LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPN--KQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAP 499 (1130)
Q Consensus 431 ~--------~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~--~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~ 499 (1130)
| .+++||..+-..+ +.+..-...|.+++|++-. ..+..+--+.+..+.+|| ..+......+.....
T Consensus 126 g~~g~~~~phvriWdsv~L~TL---~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~ 202 (626)
T KOG2106|consen 126 GTSGRPLQPHVRIWDSVTLSTL---HVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEV 202 (626)
T ss_pred ccCCCcCCCeeeecccccceee---eeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccce
Confidence 3 5999997764433 3455666789999999843 322333345677899999 888777777777778
Q ss_pred EEEEeecccCCccEEEEEecCCcEEEEEccCCcceee---ecC-CCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC
Q 001184 500 VYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD---YDA-PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1130)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~---~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1130)
|....|+|... +++++ ...+.+.+|+++.+..... +.. ....|.+++|.++|..+ ++ |.+|.|.+|+..
T Consensus 203 v~~a~FHPtd~-nliit-~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdvi-Tg----DS~G~i~Iw~~~ 275 (626)
T KOG2106|consen 203 VFLATFHPTDP-NLIIT-CGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVI-TG----DSGGNILIWSKG 275 (626)
T ss_pred EEEEEeccCCC-cEEEE-eCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEE-ee----cCCceEEEEeCC
Confidence 88899998764 44444 4568999999887654432 222 22579999999999865 33 348999999998
Q ss_pred CCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCc
Q 001184 576 EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQG 655 (1130)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~ 655 (1130)
+.+..+....|. +.|.+++.-.+|. |++|+.|+.|..|| .+-+.++..+.+...+.|..++-...+ +++|...+.
T Consensus 276 ~~~~~k~~~aH~-ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~ 350 (626)
T KOG2106|consen 276 TNRISKQVHAHD-GGVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNF 350 (626)
T ss_pred CceEEeEeeecC-CceEEEEEecCcc-EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeeccce
Confidence 888888777554 4899999988875 55699999999999 566666666666666677777654433 777776666
Q ss_pred EEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCccccc
Q 001184 656 IKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLE 735 (1130)
Q Consensus 656 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1130)
|..=.++++.. +.
T Consensus 351 iL~Gt~~~~f~-------------------------------~~------------------------------------ 363 (626)
T KOG2106|consen 351 ILQGTLENGFT-------------------------------LT------------------------------------ 363 (626)
T ss_pred EEEeeecCCce-------------------------------EE------------------------------------
Confidence 65433333210 00
Q ss_pred ccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCccccccccccc
Q 001184 736 DISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQH 815 (1130)
Q Consensus 736 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 815 (1130)
. .+|......++..|+..++++++.|+.+++|+-.. ..
T Consensus 364 ------------------------v---~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k---------------~~ 401 (626)
T KOG2106|consen 364 ------------------------V---QGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHK---------------LE 401 (626)
T ss_pred ------------------------E---EecccceeeEEcCCChhheeeccCcceEEEccCCc---------------ee
Confidence 0 22666778889999999999999999999997111 12
Q ss_pred ccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEe
Q 001184 816 WQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGM 894 (1130)
Q Consensus 816 w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~ 894 (1130)
|.. ....++.|+.|.|.| .+|.|. .|...+.|.++...+..-.. ..++++++|+| +|.+||+|+
T Consensus 402 wt~------------~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp-~G~~lAvgs 466 (626)
T KOG2106|consen 402 WTK------------IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP-DGAFLAVGS 466 (626)
T ss_pred EEE------------EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC-CCCEEEEec
Confidence 222 246788999999999 888888 89999999999666655444 88999999999 999999999
Q ss_pred CCCcEEEEEeecC-eEEEEE-ecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccce------------eeEecc
Q 001184 895 EDSTIQIYNVRVD-EVKTKL-KGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS------------IAIQLP 960 (1130)
Q Consensus 895 ~dg~v~iwd~~~~-~~~~~l-~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~------------~~~~~~ 960 (1130)
.|+.|+||.+..+ ...... +.|..+|+.+.||+|+++|.+.+.|-.|..|....-+.... .-....
T Consensus 467 ~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~ 546 (626)
T KOG2106|consen 467 HDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVF 546 (626)
T ss_pred CCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEe
Confidence 9999999999754 333222 23448899999999999999999999999994333221111 001111
Q ss_pred CCCCCCCeEEEEEcCCCcEEEEEc-CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeC
Q 001184 961 AGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDA 1038 (1130)
Q Consensus 961 ~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~ 1038 (1130)
.+.....+..++-+....+++++. .+.+++|...--+....+..-.+|++.|++++|+.+..+|.+.+.|..|..|++
T Consensus 547 g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 547 GGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred cccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 222334455566677777888864 689999998766655555555567999999999999999998889999999986
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=270.78 Aligned_cols=249 Identities=21% Similarity=0.277 Sum_probs=215.3
Q ss_pred eeecCCCccEEEEEEcCC-CCEEEEEeCCCeEEEEEecCCcc--ceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCc
Q 001184 403 AIVKDSSISVSRVAWSPD-GNFIGVAFTKHLIHLYTYQGSND--LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL 479 (1130)
Q Consensus 403 ~~~~~h~~~V~~v~~spd-g~~las~~~d~~i~vwd~~~~~~--~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~ 479 (1130)
.++++|.+.|+.++..+. ...|.+++.|.++.+|++..... -.....+.||...|..++.++||+ +.++++.|++
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~--~alS~swD~~ 86 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGN--FALSASWDGT 86 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCc--eEEeccccce
Confidence 378999999999999996 56889999999999999865421 123447899999999999999999 8999999999
Q ss_pred EEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCC-CccEEEEEEecC--CCe
Q 001184 480 IRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP-GLWCTTMLYSAD--GSR 555 (1130)
Q Consensus 480 v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~s~~--~~~ 555 (1130)
+++|| .+|+..+.|.||...|.+++|++ |...+++|+.|.+|++|+.-........... ..+|.++.|+|+ ...
T Consensus 87 lrlWDl~~g~~t~~f~GH~~dVlsva~s~--dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~ 164 (315)
T KOG0279|consen 87 LRLWDLATGESTRRFVGHTKDVLSVAFST--DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPI 164 (315)
T ss_pred EEEEEecCCcEEEEEEecCCceEEEEecC--CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcE
Confidence 99999 88899999999999999999965 4479999999999999998754443333333 679999999998 678
Q ss_pred EEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCc
Q 001184 556 LFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSL 635 (1130)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i 635 (1130)
|++++. |++|++||+++.+....+.+|.. .++.++++|||..+++|+.||.+.+||++.++.++.+... ..|
T Consensus 165 Ivs~s~----DktvKvWnl~~~~l~~~~~gh~~-~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~---~~v 236 (315)
T KOG0279|consen 165 IVSASW----DKTVKVWNLRNCQLRTTFIGHSG-YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAF---DIV 236 (315)
T ss_pred EEEccC----CceEEEEccCCcchhhccccccc-cEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCC---CeE
Confidence 888876 99999999999999999999776 8999999999999999999999999999999998887643 379
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 636 PRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 636 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
.+++|+|+...|+.+. +..|+|||+++.
T Consensus 237 ~sl~fspnrywL~~at-~~sIkIwdl~~~ 264 (315)
T KOG0279|consen 237 NSLCFSPNRYWLCAAT-ATSIKIWDLESK 264 (315)
T ss_pred eeEEecCCceeEeecc-CCceEEEeccch
Confidence 9999999877776664 456999999877
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=276.77 Aligned_cols=338 Identities=17% Similarity=0.263 Sum_probs=285.2
Q ss_pred eeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEE
Q 001184 449 EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWL 527 (1130)
Q Consensus 449 ~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd 527 (1130)
.|..|++.|.+++.+|+.+ +++||+.|....+|+ .+|..+..+.+|+..|+++.|+ .++.+|+||+.+|.|++|.
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fs--hdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFS--HDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEc--cCceEEEecCCCccEEEEE
Confidence 6889999999999999777 899999999999999 8899999999999999999995 5668999999999999999
Q ss_pred ccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEe
Q 001184 528 YDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG 607 (1130)
Q Consensus 528 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 607 (1130)
..++.....+......+.-+.|.|-+..|++|+. +|.+.+|.+.++...+.+.||.. ++++-.|.|+|++++++.
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRILTGY 209 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCCC-CcccccccCCCceEEEEe
Confidence 9999999988877778999999999999999986 99999999999888899999766 899999999999999999
Q ss_pred CCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccc
Q 001184 608 EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKV 687 (1130)
Q Consensus 608 ~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1130)
.||+|++||..+++++..+....+. ...++.++..+..++.|..++.+.+-+..+++ .+...
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e~~-~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK-Vv~~~---------------- 271 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAEGL-ELPCISLNLAGSTLTKGNSEGVACGVNNGSGK-VVNCN---------------- 271 (399)
T ss_pred cCceEEEEecCCCceeEEecccccC-cCCccccccccceeEeccCCccEEEEccccce-EEEec----------------
Confidence 9999999999999999888755432 57889999999999999999998887654441 00000
Q ss_pred cccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCc
Q 001184 688 PGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSA 767 (1130)
Q Consensus 688 ~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 767 (1130)
T Consensus 272 -------------------------------------------------------------------------------- 271 (399)
T KOG0296|consen 272 -------------------------------------------------------------------------------- 271 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCE
Q 001184 768 SKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSY 847 (1130)
Q Consensus 768 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~ 847 (1130)
.+.+..+.. -.+.....|.++.++..-.+
T Consensus 272 --------n~~~~~l~~-------------------------------------------~~e~~~esve~~~~ss~lpL 300 (399)
T KOG0296|consen 272 --------NGTVPELKP-------------------------------------------SQEELDESVESIPSSSKLPL 300 (399)
T ss_pred --------CCCCccccc-------------------------------------------cchhhhhhhhhcccccccch
Confidence 000000000 00012334455556667778
Q ss_pred EEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEc
Q 001184 848 VMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFS 926 (1130)
Q Consensus 848 la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s 926 (1130)
.|+|+ ||+|.|||+...+....+. |...|+.+.|-+ ..+|++++.||.|+.||.++|+++.++.||...|.+++++
T Consensus 301 ~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls 377 (399)
T KOG0296|consen 301 AACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALS 377 (399)
T ss_pred hhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEc
Confidence 88888 9999999999877766665 777899999987 4688899999999999999999999999999999999999
Q ss_pred cCCCeEEEEeCCCcEEEEECC
Q 001184 927 TNLNILVSSGSDAQLIFWNTD 947 (1130)
Q Consensus 927 ~dg~~L~s~s~Dg~i~vwd~~ 947 (1130)
|++++++++|.|++.+|++..
T Consensus 378 ~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 378 PQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CCCcEEEEecCCCeEEEEecC
Confidence 999999999999999999864
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=264.72 Aligned_cols=285 Identities=20% Similarity=0.332 Sum_probs=235.0
Q ss_pred cCCCCEEEEEEecC-CCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCE
Q 001184 345 HQGSSVVSMDFHPF-HHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 345 ~h~~~V~~v~fspd-g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 423 (1130)
+|+++|+.+||+|- |. +||+|+.|..|+||+...+.-... ...+-.+|+..|.++||+|.|++
T Consensus 12 gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAwsp~g~~ 75 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAWSPHGRY 75 (312)
T ss_pred CCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeeecCCCcE
Confidence 59999999999998 76 899999999999999985332211 11134589999999999999999
Q ss_pred EEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCC---CeeeEecCCCcC
Q 001184 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG---RKLFQFEGHEAP 499 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~---~~~~~~~~h~~~ 499 (1130)
||+|+.|.++.||.-..++ .....+++||...|.+++|+++|. +||+|+.|+.|-||. ..+ .++..+.+|+..
T Consensus 76 La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD 152 (312)
T KOG0645|consen 76 LASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD 152 (312)
T ss_pred EEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeecccccc
Confidence 9999999999999977654 566778999999999999999999 899999999999999 322 467889999999
Q ss_pred EEEEeecccCCccEEEEEecCCcEEEEEccC---CcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC
Q 001184 500 VYSVCPHQKENIHFIFSTAVDGKIKAWLYDN---VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE 576 (1130)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1130)
|..+.|||.. .+|++++.|++|++|+-.. -.+..++.++...|.+++|.+.|..|++++. ++++.||-..
T Consensus 153 VK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~Iw~~~- 225 (312)
T KOG0645|consen 153 VKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVSIWRLY- 225 (312)
T ss_pred ccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceEeeeec-
Confidence 9999999877 5999999999999997663 2356788889889999999999999999975 9999999855
Q ss_pred CceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc------eeEEEeccCCCCCcceEEEcCC-CCEEEE
Q 001184 577 GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN------MLTSTEAEGGLPSLPRLRFNKE-GNLLVV 649 (1130)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~------~~~~~~~~~~~~~i~~v~~s~~-~~~l~~ 649 (1130)
..+.+.+...+..+.|. ...|++++.|+.|++|.-...- .+.. ....|...|+++.|+|. .++|++
T Consensus 226 ----~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~-~~~aHe~dVNsV~w~p~~~~~L~s 298 (312)
T KOG0645|consen 226 ----TDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAK-KEGAHEVDVNSVQWNPKVSNRLAS 298 (312)
T ss_pred ----cCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHh-hhcccccccceEEEcCCCCCceee
Confidence 23344455578888887 5689999999999999765421 1111 11234448999999994 788999
Q ss_pred EeCCCcEEEEEcC
Q 001184 650 TTADQGIKILANA 662 (1130)
Q Consensus 650 ~~~dg~i~iw~~~ 662 (1130)
+++||.+++|.+.
T Consensus 299 ~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 299 GGDDGIVNFWELE 311 (312)
T ss_pred cCCCceEEEEEec
Confidence 9999999999864
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=293.09 Aligned_cols=283 Identities=20% Similarity=0.308 Sum_probs=248.7
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
-+..|..|.|.|+|++ |++|+..|.+.+|+..+- .|+ .++..|..+|.++.||++|.+++
T Consensus 95 vkc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~f------nFE-------------tilQaHDs~Vr~m~ws~~g~wmi 154 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTSF------NFE-------------TILQAHDSPVRTMKWSHNGTWMI 154 (464)
T ss_pred cccceeeEEEcCCCce-eEeecccccEEEecCcee------eHH-------------HHhhhhcccceeEEEccCCCEEE
Confidence 4568999999999997 889999999999997321 111 15779999999999999999999
Q ss_pred EEeCCCeEEEEEecCCccceeeeeeecCC-CCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEE
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHV-GGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~-~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1130)
+|+.+|.|++|+..-.. ++ .+.+|. ..|++++|+|.+. .+++|++||+|+||| ...+.-..+.||.-.|.++
T Consensus 155 SgD~gG~iKyWqpnmnn-Vk---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksv 228 (464)
T KOG0284|consen 155 SGDKGGMIKYWQPNMNN-VK---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSV 228 (464)
T ss_pred EcCCCceEEecccchhh-hH---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCccee
Confidence 99999999999986543 22 345554 8999999999888 799999999999999 7788888889999999999
Q ss_pred eecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEE
Q 001184 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1130)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1130)
+|+|.. .+|+++|.|..|++||.+++.++.++..|...|..+.|+|++++|++++. |..++++|+++.+.++++
T Consensus 229 dWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 229 DWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELFTY 302 (464)
T ss_pred ccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHHHh
Confidence 999876 68999999999999999999999999999999999999999999999987 889999999999999999
Q ss_pred ecccCceeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001184 584 IGFRKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANA 662 (1130)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~ 662 (1130)
.+|.. .+.++.|+|-.. .|.+|+.||.|..|.+...+++..+. ..+...|.+++|+|-|.+|++|+.|.++++|.-.
T Consensus 303 r~Hkk-dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~-~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 303 RGHKK-DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP-PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred hcchh-hheeeccccccccceeeccCCCceEEEeccccccccCCC-cccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 99887 899999999764 77779999999999998666655554 3455689999999999999999999999999743
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=271.44 Aligned_cols=285 Identities=19% Similarity=0.253 Sum_probs=247.6
Q ss_pred eccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCC
Q 001184 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1130)
Q Consensus 343 ~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 422 (1130)
..+|++.|..+.|+|+|. ++|+|+.|..|.+|++.....-. .++++|+++|..+.|.+|++
T Consensus 43 l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~~d~s 103 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGMRDGS 103 (338)
T ss_pred cCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeeccCCC
Confidence 457999999999999998 69999999999999976543322 15789999999999999999
Q ss_pred EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEE
Q 001184 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVY 501 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~ 501 (1130)
.|++++.|++|+.||+++|++.+ .+++|..-|+++.-+.-|.. ++.|++.|+++++|| .+...++++. ...+++
T Consensus 104 ~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqlt 178 (338)
T KOG0265|consen 104 HILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLT 178 (338)
T ss_pred EEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cceeEE
Confidence 99999999999999999998776 67899999999996666766 789999999999999 6666777664 567889
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC----C
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE----G 577 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~----~ 577 (1130)
++.|. ..+..+++|+-|+.|++||++.......+.+|..+|+.+..+++|.++.+-+. +.++++||.+. .
T Consensus 179 Av~f~--d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~p~~ 252 (338)
T KOG0265|consen 179 AVGFK--DTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFAPSQ 252 (338)
T ss_pred EEEec--ccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccCCCC
Confidence 99885 44568999999999999999999999999999999999999999999999887 89999999875 3
Q ss_pred ceeEEEecccCc---eeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCC
Q 001184 578 ALKRTYIGFRKK---SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQ 654 (1130)
Q Consensus 578 ~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg 654 (1130)
+++..+.++.-. ....++|+|++..+-+|+.|..+++||......+..+.+|.+ .|++++|+|...+|.+++.|.
T Consensus 253 R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~g--svn~~~Fhp~e~iils~~sdk 330 (338)
T KOG0265|consen 253 RCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYG--SVNEVDFHPTEPIILSCSSDK 330 (338)
T ss_pred ceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcce--eEEEeeecCCCcEEEEeccCc
Confidence 447777765321 244588999999999999999999999998888888877655 899999999999999999999
Q ss_pred cEEEE
Q 001184 655 GIKIL 659 (1130)
Q Consensus 655 ~i~iw 659 (1130)
+|.+=
T Consensus 331 ~i~lg 335 (338)
T KOG0265|consen 331 TIYLG 335 (338)
T ss_pred eeEee
Confidence 98863
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=285.70 Aligned_cols=280 Identities=20% Similarity=0.285 Sum_probs=252.3
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
....|++++|+.+|. +||+|+.||.++||+...+. +. ++..|+++|.++.|+.+|.||+
T Consensus 234 ~nkdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G~l-~~-------------------tl~~HkgPI~slKWnk~G~yil 292 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGT-LLATGSEDGEARIWNKDGNL-IS-------------------TLGQHKGPIFSLKWNKKGTYIL 292 (524)
T ss_pred ccCCcceEEecCCCC-eEEEeecCcEEEEEecCchh-hh-------------------hhhccCCceEEEEEcCCCCEEE
Confidence 456899999999998 79999999999999987443 33 5889999999999999999999
Q ss_pred EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEe
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVC 504 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~ 504 (1130)
+++.|+++.+||..+|.... .+.-|..+-.++.|-.+.. +++++.|+.|+|+. ...+++.++.+|.++|.++.
T Consensus 293 S~~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk 366 (524)
T KOG0273|consen 293 SGGVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALK 366 (524)
T ss_pred eccCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEE
Confidence 99999999999999987554 3566888778899988776 89999999999999 67788999999999999999
Q ss_pred ecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCC---------CeEEEeeecCCCCcEEEEeeCC
Q 001184 505 PHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADG---------SRLFSCGTSKEGDSHLVEWNES 575 (1130)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~---------~~l~~~~~~~~~~~~i~~wd~~ 575 (1130)
|.| .+.+|++++.|+++++|..........+..|...|..+.|+|+| ..+++++. +++|++||+.
T Consensus 367 ~n~--tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~ 440 (524)
T KOG0273|consen 367 WNP--TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVE 440 (524)
T ss_pred ECC--CCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEcc
Confidence 965 45899999999999999998888888999999999999999965 46788876 9999999999
Q ss_pred CCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCc
Q 001184 576 EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQG 655 (1130)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~ 655 (1130)
.+.++..|..|.. +|.+++|+|+|+++++|+.||.|.+|+..+++.++.....+ .|..++|+.+|..|..+..|+.
T Consensus 441 ~gv~i~~f~kH~~-pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~---~Ifel~Wn~~G~kl~~~~sd~~ 516 (524)
T KOG0273|consen 441 SGVPIHTLMKHQE-PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG---GIFELCWNAAGDKLGACASDGS 516 (524)
T ss_pred CCceeEeeccCCC-ceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC---eEEEEEEcCCCCEEEEEecCCC
Confidence 9999999998776 89999999999999999999999999999999999987655 5899999999999999999999
Q ss_pred EEEEEcC
Q 001184 656 IKILANA 662 (1130)
Q Consensus 656 i~iw~~~ 662 (1130)
+.+.|+.
T Consensus 517 vcvldlr 523 (524)
T KOG0273|consen 517 VCVLDLR 523 (524)
T ss_pred ceEEEec
Confidence 9998864
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=272.45 Aligned_cols=329 Identities=16% Similarity=0.194 Sum_probs=278.9
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
.+..|...|.+++.+|+.+++|+|+.|....+|++.+|.... .+.+|+..|+++.|+.||. +|+||+-+|.|+||
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVF 133 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEE
Confidence 577999999999999999999999999999999999998443 6899999999999999999 89999999999999
Q ss_pred e-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeec
Q 001184 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
+ .+|.....+...-..+.-+.|||.. .+|+.|+.||.+.+|.+.+......+.+|..++++=.|.|+|++++++..
T Consensus 134 ~~stg~~~~~~~~e~~dieWl~WHp~a--~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~- 210 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVEDIEWLKWHPRA--HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD- 210 (399)
T ss_pred EcccCceEEEeecccCceEEEEecccc--cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec-
Confidence 9 8888888887777888889998844 79999999999999999998888889999999999999999999999986
Q ss_pred CCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEecc---------CCCC
Q 001184 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE---------GGLP 633 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---------~~~~ 633 (1130)
+++|++|++.+++++..+.+.......++.++..+..++.|+.++.+++-+..+|+.+...... ....
T Consensus 211 ---dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~e 287 (399)
T KOG0296|consen 211 ---DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDE 287 (399)
T ss_pred ---CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhh
Confidence 9999999999999999888766667888999999999999999999999999888887766531 1111
Q ss_pred CcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCC
Q 001184 634 SLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPAR 713 (1130)
Q Consensus 634 ~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~ 713 (1130)
.|-++.++..-.+.|+|+-||+|.|||+.... ++
T Consensus 288 sve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~--~R-------------------------------------------- 321 (399)
T KOG0296|consen 288 SVESIPSSSKLPLAACGSVDGTIAIYDLAAST--LR-------------------------------------------- 321 (399)
T ss_pred hhhhcccccccchhhcccccceEEEEecccch--hh--------------------------------------------
Confidence 23334444455667777777777777764320 00
Q ss_pred CcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEe
Q 001184 714 PSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKL 793 (1130)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~i 793 (1130)
T Consensus 322 -------------------------------------------------------------------------------- 321 (399)
T KOG0296|consen 322 -------------------------------------------------------------------------------- 321 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeC
Q 001184 794 WKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMS 872 (1130)
Q Consensus 794 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~ 872 (1130)
..-.|...|..+.|-+ ..+|++++ +|.|+.||.++|+++.++.+
T Consensus 322 ----------------------------------~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~G 366 (399)
T KOG0296|consen 322 ----------------------------------HICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTG 366 (399)
T ss_pred ----------------------------------eeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEec
Confidence 0003677788888888 45566655 99999999999999999999
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEee
Q 001184 873 PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR 905 (1130)
Q Consensus 873 ~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~ 905 (1130)
|...|.+++++| +.+++++++.|++.+||++.
T Consensus 367 H~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 367 HQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 999999999999 89999999999999999864
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=278.06 Aligned_cols=293 Identities=18% Similarity=0.308 Sum_probs=260.2
Q ss_pred ccceeeec-cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEE
Q 001184 337 PRAVACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRV 415 (1130)
Q Consensus 337 ~~~~~~~~-~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 415 (1130)
|-.+.+.+ +|.+.|.|+++.|-+. .+++|+.|++|+|||+.+|++.. ++.||-..|..+
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lkl-------------------tltGhi~~vr~v 199 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKL-------------------TLTGHIETVRGV 199 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEE-------------------eecchhheeeee
Confidence 34455566 4999999999999987 59999999999999999999876 588999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEec
Q 001184 416 AWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFE 494 (1130)
Q Consensus 416 ~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~ 494 (1130)
++|+--.||.+++.|+.|+-||++..+.++ .+.||-..|.+++..|.-. .|+||+.|.++|||| .+...+..+.
T Consensus 200 avS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l~ 274 (460)
T KOG0285|consen 200 AVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVLS 274 (460)
T ss_pred eecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEec
Confidence 999999999999999999999999988776 5789999999999999888 899999999999999 8888999999
Q ss_pred CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeC
Q 001184 495 GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE 574 (1130)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1130)
||..+|.++.+.+.. ..+++|+.|++|++||+..++....+..|...+.+++..|....+++++ ...|.-|++
T Consensus 275 GH~~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas-----~dnik~w~~ 347 (460)
T KOG0285|consen 275 GHTNPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS-----PDNIKQWKL 347 (460)
T ss_pred CCCCcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC-----CccceeccC
Confidence 999999999986544 5799999999999999999999999999999999999999999999987 457999999
Q ss_pred CCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEec---cC---CCCCcceEEEcCCCCEEE
Q 001184 575 SEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA---EG---GLPSLPRLRFNKEGNLLV 648 (1130)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~---~~~~i~~v~~s~~~~~l~ 648 (1130)
..|..+..+.+|.. .+.+++...|+ ++++|+++|.+.+||.++|-..+.... .+ ....|.+.+|...|..|+
T Consensus 348 p~g~f~~nlsgh~~-iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rli 425 (460)
T KOG0285|consen 348 PEGEFLQNLSGHNA-IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLI 425 (460)
T ss_pred Cccchhhccccccc-eeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEE
Confidence 99999999888766 88899888775 899999999999999998865544321 11 223588999999999999
Q ss_pred EEeCCCcEEEEEcCC
Q 001184 649 VTTADQGIKILANAD 663 (1130)
Q Consensus 649 ~~~~dg~i~iw~~~~ 663 (1130)
+|..|.+|++|.-+.
T Consensus 426 t~eadKtIk~~keDe 440 (460)
T KOG0285|consen 426 TGEADKTIKMYKEDE 440 (460)
T ss_pred eccCCcceEEEeccc
Confidence 999999999998544
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=257.67 Aligned_cols=288 Identities=16% Similarity=0.242 Sum_probs=249.2
Q ss_pred ccceeeecc-CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEE
Q 001184 337 PRAVACTMH-QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRV 415 (1130)
Q Consensus 337 ~~~~~~~~~-h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 415 (1130)
|...++++. |.+.|.++.|.-||+| ..+++.|.+|++|+...|.+++ ++.+|...|..+
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~lik-------------------tYsghG~EVlD~ 65 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIK-------------------TYSGHGHEVLDA 65 (307)
T ss_pred cchhceeecccccceEEEEEccCCCE-EEEcCCCceEEeecccccceee-------------------eecCCCceeeec
Confidence 343445554 8999999999999996 6777889999999999999987 588999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe---cCCCeeeE
Q 001184 416 AWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD---LSGRKLFQ 492 (1130)
Q Consensus 416 ~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd---~~~~~~~~ 492 (1130)
+.+.|...+++|+.|+.|.+||+.+|+..+ .+.+|.+.|+.++|+.+.. .+++|+.|.++++|| .+-++++.
T Consensus 66 ~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 66 ALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred cccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccch
Confidence 999999999999999999999999998776 6899999999999999998 999999999999999 45678889
Q ss_pred ecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEe
Q 001184 493 FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEW 572 (1130)
Q Consensus 493 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1130)
+......|.++.+.. ..|++|+.||+++.||++.++....+ -+++|+++.|++|++..++++. ++.+++.
T Consensus 141 ldea~D~V~Si~v~~----heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l----~stlrLl 210 (307)
T KOG0316|consen 141 LDEAKDGVSSIDVAE----HEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSL----DSTLRLL 210 (307)
T ss_pred hhhhcCceeEEEecc----cEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeec----cceeeec
Confidence 988999999997743 67999999999999999987766544 4567999999999999999887 8999999
Q ss_pred eCCCCceeEEEecccCceeE-EEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEe
Q 001184 573 NESEGALKRTYIGFRKKSAG-VVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT 651 (1130)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~ 651 (1130)
|-.+|++++.+.||.+.... .++++.....+++|++||.+++||+.....+..+..++.. .+.+++++|.-..++++.
T Consensus 211 Dk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v-~v~dl~~hp~~~~f~~A~ 289 (307)
T KOG0316|consen 211 DKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTV-IVTDLSCHPTMDDFITAT 289 (307)
T ss_pred ccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCce-eEEeeecccCccceeEec
Confidence 99999999999999875443 3667777789999999999999999999999888876652 478999999877777775
Q ss_pred CCCcEEEEEc
Q 001184 652 ADQGIKILAN 661 (1130)
Q Consensus 652 ~dg~i~iw~~ 661 (1130)
.. .+..|.-
T Consensus 290 ~~-~~~~~~~ 298 (307)
T KOG0316|consen 290 GH-GDLFWYQ 298 (307)
T ss_pred CC-ceeceee
Confidence 44 4555643
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-29 Score=268.27 Aligned_cols=549 Identities=14% Similarity=0.153 Sum_probs=384.3
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCC-CCeeEEEEecCCCceEEEEEcCCCcEEEEe-c
Q 001184 408 SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHV-GGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-L 485 (1130)
Q Consensus 408 h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~-~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~ 485 (1130)
-...|+++|||.+.+.||.+-.||.|.+|++..+=... ..+.++. ..|.+++|++.++ |.+.+.+|.|.-|| .
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~--~vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE--PVIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceee--EEEecCCCCceeeEEEccCCe---EEeecCCceEEEEecc
Confidence 35689999999999999999999999999999865433 3455554 5799999996665 89999999999999 9
Q ss_pred CCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCccee--eecCCCccEEEEEEecCCCeEEEeeecC
Q 001184 486 SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV--DYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1130)
Q Consensus 486 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1130)
+++.++.+....+.|++++.+|.. ..++.|+.||.+..++...+.... .+......+.++.|.|++..++.|+.
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~-- 174 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI-- 174 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc--
Confidence 999999999999999999998765 689999999977777666554443 33445578999999999999999987
Q ss_pred CCCcEEEEeeCCCCceeEEEec----c---cCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcc
Q 001184 564 EGDSHLVEWNESEGALKRTYIG----F---RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLP 636 (1130)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~----~---~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~ 636 (1130)
||.|++||...+..+..... . ....|.++.|-.+ ..|++|...|+|.+||...+.+++.+..+.. .|.
T Consensus 175 --Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl 249 (691)
T KOG2048|consen 175 --DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVL 249 (691)
T ss_pred --CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhc--cee
Confidence 99999999999887662211 1 2224666777755 4799999999999999999999998887765 799
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcc
Q 001184 637 RLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPST 716 (1130)
Q Consensus 637 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~ 716 (1130)
+++..+++..+++++.|+.+..+...++...
T Consensus 250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~------------------------------------------------- 280 (691)
T KOG2048|consen 250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSE------------------------------------------------- 280 (691)
T ss_pred EEEEcCCCCeEEEccCCCceEEEEecCCccc-------------------------------------------------
Confidence 9999999999999999999988876655211
Q ss_pred cccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeec
Q 001184 717 ILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKW 796 (1130)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~ 796 (1130)
|-... ....|...+.++++.++ .+++++.|..+.+-..
T Consensus 281 ---------------------------wv~~~-------------~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 281 ---------------------------WVINS-------------RRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSS 318 (691)
T ss_pred ---------------------------eeeec-------------cccCCcccceeeeeecc--eEEecceeeEEEEccc
Confidence 11100 00337788889998877 7889999988876432
Q ss_pred CCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCce---------eE
Q 001184 797 NRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFK---------VM 867 (1130)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~---------~~ 867 (1130)
..... .+.. ....+ .... -+...+..++++.-....+.+|.+-+.- +.
T Consensus 319 ~~~~~--------------~~h~----~~~~~---p~~~--~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Ll 375 (691)
T KOG2048|consen 319 REFKN--------------MDHR----QKNLF---PASD--RVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLL 375 (691)
T ss_pred cccCc--------------hhhh----ccccc---cccc--eeecCccceEEEEeccccccceeccCcccccccChhhhe
Confidence 21000 0000 00000 1111 1333455555555557778888876541 12
Q ss_pred EEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEE-----EecCCCCeeEEEEccCCCeEEEEe-CCCcE
Q 001184 868 TTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK-----LKGHQKHITGLAFSTNLNILVSSG-SDAQL 941 (1130)
Q Consensus 868 ~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~-----l~~h~~~V~~l~~s~dg~~L~s~s-~Dg~i 941 (1130)
+........|.+.+.|| +|+++|.+.-. .++||.++....+.. ...-.-....+.|+-|++.++.++ .+..+
T Consensus 376 kl~~k~~~nIs~~aiSP-dg~~Ia~st~~-~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~l 453 (691)
T KOG2048|consen 376 KLFTKEKENISCAAISP-DGNLIAISTVS-RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSL 453 (691)
T ss_pred eeecCCccceeeeccCC-CCCEEEEeecc-ceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEeccccee
Confidence 22223455699999999 99999988643 588998875322222 222334577889999999888888 67788
Q ss_pred EEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE-EcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECC-
Q 001184 942 IFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSC- 1019 (1130)
Q Consensus 942 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~- 1019 (1130)
.+.++++.........+.. ..-..++.++.|++|.++++ +..+.|.+|++++++.-...... +..|++++|+|
T Consensus 454 e~~el~~ps~kel~~~~~~--~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rl---n~~vTa~~~~~~ 528 (691)
T KOG2048|consen 454 EEFELETPSFKELKSIQSQ--AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRL---NIDVTAAAFSPF 528 (691)
T ss_pred EEEEecCcchhhhhccccc--cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhcc---Ccceeeeecccc
Confidence 8888887544332222211 23368999999999999998 67999999999987765443233 57899999995
Q ss_pred CCCEEEEEeCCCcEEEEeCCCcccccccCCCcc-cccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 001184 1020 NSQLIYATFTDGSIGVFDADSLRLRCRIAPSAY-MSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1093 (1130)
Q Consensus 1020 dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~ 1093 (1130)
+...|+.+..|+.++-||++..++- +...... .-...+..-...+..+.|+|.++..+++=+ .+-+++.|.+
T Consensus 529 ~~~~lvvats~nQv~efdi~~~~l~-~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s~~~~~~-a~w~~~id~~ 601 (691)
T KOG2048|consen 529 VRNRLVVATSNNQVFEFDIEARNLT-RWSKNNTRNLPKEPKTLIPGIPGISFDPKNSSRFIVYD-AHWSCLIDFS 601 (691)
T ss_pred ccCcEEEEecCCeEEEEecchhhhh-hhhhccccccccChhhcCCCCceEEeCCCCccEEEEEc-CcEEEEEecC
Confidence 5668888889999999999544321 1110000 000000111122344667776666555544 3445666654
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=270.11 Aligned_cols=245 Identities=18% Similarity=0.308 Sum_probs=225.9
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
++.+|.+.|.|+++.|-..++++|+.|++|+|||+.+|+.. .++.||-..|..+++|+-.. ++++++.|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk---ltltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK---LTLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEE---EeecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence 68899999999999999999999999999999999999744 37899999999999999888 89999999999999
Q ss_pred e-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeec
Q 001184 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
| ...+.++.+.||-..|.+++.+|.. ..|++|+.|.++++||+++...+..+.+|..+|.++.+.|-...+++++.
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~- 297 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH- 297 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC-
Confidence 9 8889999999999999999998876 58999999999999999999999999999999999999999999999987
Q ss_pred CCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcC
Q 001184 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~ 642 (1130)
|++|++||+..|+...++..|.. .+.+++.+|....+++++.| .|+-|++..|..+..+..+.. .|++++...
T Consensus 298 ---D~tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~--iintl~~ns 370 (460)
T KOG0285|consen 298 ---DSTVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNA--IINTLSVNS 370 (460)
T ss_pred ---CceEEEeeeccCceeEeeecccc-eeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccc--eeeeeeecc
Confidence 99999999999999999987666 89999999999999998876 499999999999888766554 689999988
Q ss_pred CCCEEEEEeCCCcEEEEEcCCC
Q 001184 643 EGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
|+ ++++|+++|.+.+||.+++
T Consensus 371 D~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 371 DG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred Cc-eEEEcCCceEEEEEecCcC
Confidence 77 6888999999999999888
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-32 Score=309.42 Aligned_cols=285 Identities=22% Similarity=0.371 Sum_probs=250.1
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCc--eeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRE--RLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 423 (1130)
|...|.|+.|||+|++ +++++.|+.+++|+..+++ ... .+.+|...|..++|+|||++
T Consensus 158 ~~~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~-------------------~l~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLR-------------------ELSGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred ccCceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhc-------------------cccccccceeeeEECCCCcE
Confidence 5889999999999995 9999999999999997666 332 35799999999999999999
Q ss_pred EEEEeCCCeEEEEEe-cCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEE
Q 001184 424 IGVAFTKHLIHLYTY-QGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVY 501 (1130)
Q Consensus 424 las~~~d~~i~vwd~-~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~ 501 (1130)
+++++.|++|+|||+ ..+.+++ ++.+|...|++++|+|+|+ ++++|+.|++|+||| .+++++..+.+|.+.|+
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 999999999999999 4434444 7889999999999999997 899999999999999 77899999999999999
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcc--eeeecCCCc--cEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCC
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS--RVDYDAPGL--WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1130)
+++|. +++.+|++++.|+.|++||+.++.. ...+..+.. +++++.|+|++.++++++. ++.+.+||+..+
T Consensus 293 ~~~f~--~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 293 GLAFS--PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLKLWDLRSG 366 (456)
T ss_pred EEEEC--CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEEEEEccCC
Confidence 99995 5668999999999999999999883 344444433 5999999999999999986 889999999999
Q ss_pred ceeEEEecccCc--eeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEe--CC
Q 001184 578 ALKRTYIGFRKK--SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT--AD 653 (1130)
Q Consensus 578 ~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~--~d 653 (1130)
.....+.+|... .+.....++.+.++++|+.|+.|++||..++..+..+..+. ...+..+.++|..+++++++ .|
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d 445 (456)
T KOG0266|consen 367 KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIASSSFEGD 445 (456)
T ss_pred cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeeeecCcCCC
Confidence 999999998875 34445567889999999999999999999999988888874 45789999999999999998 78
Q ss_pred CcEEEEEcC
Q 001184 654 QGIKILANA 662 (1130)
Q Consensus 654 g~i~iw~~~ 662 (1130)
+.+++|...
T Consensus 446 ~~~~~w~~~ 454 (456)
T KOG0266|consen 446 GLIRLWKYD 454 (456)
T ss_pred ceEEEecCC
Confidence 999999753
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=270.76 Aligned_cols=300 Identities=15% Similarity=0.317 Sum_probs=267.4
Q ss_pred eeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEE
Q 001184 449 EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWL 527 (1130)
Q Consensus 449 ~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd 527 (1130)
.+.+|..+|+.+-|.|+-. +++++++|.+|++|| .+|++...++||...|..+.|+ ..|.++++++.|-.+++||
T Consensus 103 ~l~g~r~~vt~v~~hp~~~--~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~--a~Gk~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 103 KLAGHRSSVTRVIFHPSEA--LVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFD--ASGKYLATCSSDLSAKLWD 178 (406)
T ss_pred hhhccccceeeeeeccCce--EEEEecCCceEEEEEccchhhhhhhhccccceeEEEEe--cCccEEEecCCccchhhee
Confidence 4678999999999999988 899999999999999 9999999999999999999995 4558999999999999999
Q ss_pred ccC-CcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEE
Q 001184 528 YDN-VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAA 606 (1130)
Q Consensus 528 ~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 606 (1130)
.+. .+++....+|.+.|.+++|-|.|.++++++. |.+|..|+..++-++.++.+|.. .+..+..+.||..++++
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~sr----D~tik~We~~tg~cv~t~~~h~e-wvr~v~v~~DGti~As~ 253 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSR----DNTIKAWECDTGYCVKTFPGHSE-WVRMVRVNQDGTIIASC 253 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecCCeeeeccc----ccceeEEecccceeEEeccCchH-hEEEEEecCCeeEEEec
Confidence 987 5566677889999999999999999999997 89999999999999999999887 89999999999999999
Q ss_pred eCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhccccccccccccccc
Q 001184 607 GEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMK 686 (1130)
Q Consensus 607 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1130)
+.|.++++|-+.++++...+..|.+ +|.+++|.|...+ .. |.+.
T Consensus 254 s~dqtl~vW~~~t~~~k~~lR~hEh--~vEci~wap~~~~--~~-------i~~a------------------------- 297 (406)
T KOG0295|consen 254 SNDQTLRVWVVATKQCKAELREHEH--PVECIAWAPESSY--PS-------ISEA------------------------- 297 (406)
T ss_pred CCCceEEEEEeccchhhhhhhcccc--ceEEEEecccccC--cc-------hhhc-------------------------
Confidence 9999999999999988888888777 7888888775320 00 0000
Q ss_pred ccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCC
Q 001184 687 VPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDS 766 (1130)
Q Consensus 687 ~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 766 (1130)
T Consensus 298 -------------------------------------------------------------------------------- 297 (406)
T KOG0295|consen 298 -------------------------------------------------------------------------------- 297 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCC
Q 001184 767 ASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDS 846 (1130)
Q Consensus 767 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~ 846 (1130)
+ +... .+.
T Consensus 298 -----------------t----------------------------------------------~~~~---------~~~ 305 (406)
T KOG0295|consen 298 -----------------T----------------------------------------------GSTN---------GGQ 305 (406)
T ss_pred -----------------c----------------------------------------------CCCC---------Ccc
Confidence 0 0000 456
Q ss_pred EEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEE
Q 001184 847 YVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAF 925 (1130)
Q Consensus 847 ~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~ 925 (1130)
++.+++ |++|++||+.++.++.++.+|...|..++|+| +|++|+++.+|+++++||++++++..++..|..-|+++.|
T Consensus 306 ~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDf 384 (406)
T KOG0295|consen 306 VLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDF 384 (406)
T ss_pred EEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEec
Confidence 788888 99999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ccCCCeEEEEeCCCcEEEEEC
Q 001184 926 STNLNILVSSGSDAQLIFWNT 946 (1130)
Q Consensus 926 s~dg~~L~s~s~Dg~i~vwd~ 946 (1130)
..+..++++|+-|.++++|.-
T Consensus 385 h~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 385 HKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCCCceEEeccccceeeeeec
Confidence 999999999999999999963
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-32 Score=259.80 Aligned_cols=250 Identities=18% Similarity=0.321 Sum_probs=218.2
Q ss_pred eeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001184 403 AIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRV 482 (1130)
Q Consensus 403 ~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~i 482 (1130)
..+.+|++.|..+.|+|+|.+||+|+.|..|.+|++.... .....+++|.++|..+.|.+|+. .++++|.|++|+.
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRG 116 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEE
Confidence 3578999999999999999999999999999999976543 23346789999999999999999 8999999999999
Q ss_pred Ee-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeee
Q 001184 483 WD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGT 561 (1130)
Q Consensus 483 wd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1130)
|| .+|++++.+++|...|++++.. .-+..++.+++.|+++++||++......++. ...+++++.|..++..+.+++-
T Consensus 117 wD~~tG~~~rk~k~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggI 194 (338)
T KOG0265|consen 117 WDAETGKRIRKHKGHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGI 194 (338)
T ss_pred EecccceeeehhccccceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccc
Confidence 99 9999999999999999999843 2334678889999999999999887776654 3456999999999999999997
Q ss_pred cCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----ceeEEEeccCCCC--Cc
Q 001184 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV----NMLTSTEAEGGLP--SL 635 (1130)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~--~i 635 (1130)
|+.|++||++.......+.||.+ .|+.+..+++|.++.+-+.|.++++||++.. +++..+..+.+.- ..
T Consensus 195 ----dn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknl 269 (338)
T KOG0265|consen 195 ----DNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNL 269 (338)
T ss_pred ----cCceeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhc
Confidence 88999999999999999999888 8999999999999999999999999998753 4477776665432 34
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001184 636 PRLRFNKEGNLLVVTTADQGIKILANAD 663 (1130)
Q Consensus 636 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 663 (1130)
..++|+|++..+..|+.|..+++||...
T Consensus 270 L~cswsp~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 270 LKCSWSPNGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred ceeeccCCCCccccccccceEEEeeccc
Confidence 5789999999999999999999999654
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-31 Score=275.39 Aligned_cols=644 Identities=16% Similarity=0.222 Sum_probs=355.8
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
.|++.|+.+.|||-...|||+|+.|..|+||.+..|-.-.- .-+...+.+..-.|-|+.|+|...-|
T Consensus 77 ~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~L-------------Sape~~~g~~~~~vE~l~fHpTaDgi 143 (1012)
T KOG1445|consen 77 AHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKL-------------SAPEIDVGGGNVIVECLRFHPTADGI 143 (1012)
T ss_pred cccceeeccCccccchhhhhcccCCCeeEEEecCCCccccc-------------CCcceeecCCceEEEEeecccCcCce
Confidence 49999999999998888999999999999999974422110 00112355556678899999976656
Q ss_pred EEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCeeeEecCCCcCE-E
Q 001184 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPV-Y 501 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~~~~~~h~~~v-~ 501 (1130)
...+..|+++|||+.+++.+. .+.+|...|.+..|+.||+ ++++++.|+.|+||| ..++.++...+|.+.- .
T Consensus 144 l~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~H~~~rds 218 (1012)
T KOG1445|consen 144 LASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDS 218 (1012)
T ss_pred EEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCccccccccccchhh
Confidence 666678999999999987554 7899999999999999999 899999999999999 7889999999997642 2
Q ss_pred EEeecccCCccEEEEEecC----CcEEEEEccCCccee---eecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeC
Q 001184 502 SVCPHQKENIHFIFSTAVD----GKIKAWLYDNVGSRV---DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE 574 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1130)
.+.| .++-..|++.+.+ ..|++||.+...... ++.... .|.---|.||.++|+.++. ++.+|+.+.+
T Consensus 219 Rv~w--~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~st-GvLiPl~DpDt~llfLaGK---G~~~l~~lE~ 292 (1012)
T KOG1445|consen 219 RVLW--AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSST-GVLIPLYDPDTRLLFLAGK---GTNKLFMLEM 292 (1012)
T ss_pred eeee--ccchhhhhhcccchhhheeeeeeeccccCCcceeEEeeccc-ceEeeeecCCCceEEEecC---CcceEEEEEe
Confidence 3344 3443456666554 568999987654432 333222 3555678999999998874 5778888877
Q ss_pred CCCcee--EEEecccCceeEEEEEcCCCCEEEEEeC-CCcEE--------------------------------------
Q 001184 575 SEGALK--RTYIGFRKKSAGVVQFDTTRNRILAAGE-DNQIK-------------------------------------- 613 (1130)
Q Consensus 575 ~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~-------------------------------------- 613 (1130)
...+.. ..+...-.......++-|....-+..++ +..+.
T Consensus 293 ~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~a 372 (1012)
T KOG1445|consen 293 QDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTA 372 (1012)
T ss_pred cCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCc
Confidence 654331 1111000000011111111110000000 00000
Q ss_pred -EEeCCCCceeEEEec------cCCC----------------CCcceEEEcCCCCEEEEEeCCCcEEE---EEcCCCchh
Q 001184 614 -FWDMDNVNMLTSTEA------EGGL----------------PSLPRLRFNKEGNLLVVTTADQGIKI---LANADGLRA 667 (1130)
Q Consensus 614 -vwd~~~~~~~~~~~~------~~~~----------------~~i~~v~~s~~~~~l~~~~~dg~i~i---w~~~~~~~~ 667 (1130)
-|=-.+.+.+..... |+.. ..+......|...--.....++.--+ -.+..+ +.
T Consensus 373 geWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~-~e 451 (1012)
T KOG1445|consen 373 GEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKK-EE 451 (1012)
T ss_pred cceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcc-hh
Confidence 010001111111100 0000 00000000010000000000100000 000000 01
Q ss_pred hhhhcccccccccc------cccccccccceeecccccccccccc---------C----------CCCC----CCCcccc
Q 001184 668 LRAIETRAYETSRA------STEMKVPGSAVVTTITPVLSKAERV---------D----------RSSP----ARPSTIL 718 (1130)
Q Consensus 668 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~sp~~~~~~~~---------~----------~~~~----~~~~~~~ 718 (1130)
.+.+.-...+.... ....+...+.-...++|..-...+. . +..| +..+..+
T Consensus 452 ~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~ 531 (1012)
T KOG1445|consen 452 VRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPI 531 (1012)
T ss_pred hhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCc
Confidence 11110000000000 0000000000000011110000000 0 0111 1111111
Q ss_pred cCCCccccCCCCcccccccCCCccceeeccccCCccee-EEEecC-CCCCccceEEEEEeccCCeEE--EeeeCCeEEee
Q 001184 719 NGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCR-VVAMPE-STDSASKVARLLYTNSGIGIL--ALWSNGVQKLW 794 (1130)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~-~~~~~~-~~~~~~~i~~l~~s~~g~~l~--~~~~dg~i~iw 794 (1130)
...........-.-.+ ..-|.+.-|.-.......+.. ...+.+ .....++...++ .+..+++ ..+..|.|-||
T Consensus 532 sat~~v~~s~s~r~~s-~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfc--an~~rvAVPL~g~gG~iai~ 608 (1012)
T KOG1445|consen 532 SATNRVPLSQSVRPKS-CVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFC--ANNKRVAVPLAGSGGVIAIY 608 (1012)
T ss_pred cccccccccccccccc-eeeccchheeeccCccccchhhhhhhhcccccCCCccCcee--eccceEEEEecCCCceEEEE
Confidence 0000000000000000 000111111111100000000 000000 000112222233 3333333 45668999999
Q ss_pred ecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEec-CCCEEEEEe-CCeEEEEECCCc-------e
Q 001184 795 KWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSK-NDSYVMSAG-GGKVSLFNMMNF-------K 865 (1130)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~-dg~~la~~~-dg~i~iwd~~~~-------~ 865 (1130)
+++.....|++.+..- -....|+.++|.| |...||+++ ||.|++|.+..+ +
T Consensus 609 el~~PGrLPDgv~p~l--------------------~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~t 668 (1012)
T KOG1445|consen 609 ELNEPGRLPDGVMPGL--------------------FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMT 668 (1012)
T ss_pred EcCCCCCCCccccccc--------------------ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCC
Confidence 9988777766643221 2466789999998 667888887 799999998754 3
Q ss_pred eEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEE
Q 001184 866 VMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945 (1130)
Q Consensus 866 ~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd 945 (1130)
....+..|...|+++.|+|-...+|++++.|-+|++||+.+++....|.+|++.|.+++|||||+.+++.+.||+|++|+
T Consensus 669 Pe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 669 PEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred cceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence 45667889999999999997778999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE-E----cCCcEEEEECCCce--eeeeeecCCCCCCCeEEEEEC
Q 001184 946 TDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-N----HETQLAIYDGSKME--CIRQWVPQDVLSSPISSAAYS 1018 (1130)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~----~d~~i~v~d~~~~~--~~~~~~~~~~~~~~v~~v~~s 1018 (1130)
..+.+.. +....+........|.|.-||+++++ + +.+.|.+||..+.. .+....... ...+.--.+.
T Consensus 749 Prs~e~p----v~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv--aps~LvP~YD 822 (1012)
T KOG1445|consen 749 PRSREQP----VYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV--APSPLVPHYD 822 (1012)
T ss_pred CCCCCCc----cccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecc--cCcccccccc
Confidence 8885542 22222333356678999999999987 3 46789999987543 332222111 1122233455
Q ss_pred CCCC-EEEEEeCCCcEEEEeCCCcc
Q 001184 1019 CNSQ-LIYATFTDGSIGVFDADSLR 1042 (1130)
Q Consensus 1019 ~dg~-~l~t~~~Dg~i~vwd~~~~~ 1042 (1130)
+|.. ++++|-.|..|++|.+..-.
T Consensus 823 ~Ds~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 823 YDSNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred CCCceEEEecCCCceEEEEEecCCC
Confidence 6766 55566689999999876443
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=272.45 Aligned_cols=274 Identities=23% Similarity=0.314 Sum_probs=233.6
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
....|+|+++..+ .+++|..|.+|+|||.++.++.+ ++.||++.|.|+.|. .+.|+
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~-------------------~L~GHtGSVLCLqyd--~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLK-------------------ILTGHTGSVLCLQYD--ERVIV 251 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHHH-------------------hhhcCCCcEEeeecc--ceEEE
Confidence 4578999999653 38999999999999999888776 588999999999995 56999
Q ss_pred EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCC---eeeEecCCCcCEE
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGR---KLFQFEGHEAPVY 501 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~---~~~~~~~h~~~v~ 501 (1130)
+|+.|.+|+|||+++|+++. ++-+|...|..+.|+.. +++|++.|.++++|| .+.. +.+.+.||...|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999876 67889999999999853 799999999999999 3332 3356789999999
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeE
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKR 581 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1130)
.+.|. .+++++++.|.+|++|++.+.+.+.++.+|...|-|+.+ .|+++++|+. |.+|++||+..|.+++
T Consensus 325 vVdfd----~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 325 VVDFD----DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 394 (499)
T ss_pred eeccc----cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHH
Confidence 99873 269999999999999999999999999999998888776 4788888876 9999999999999999
Q ss_pred EEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEE-------EeccCCCCCcceEEEcCCCCEEEEEeCCC
Q 001184 582 TYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTS-------TEAEGGLPSLPRLRFNKEGNLLVVTTADQ 654 (1130)
Q Consensus 582 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-------~~~~~~~~~i~~v~~s~~~~~l~~~~~dg 654 (1130)
.+.||.. -|.++.| +.+.+++|+.||+|+|||+..+..... .....+.+.|..+.|. ...+++++.|.
T Consensus 395 vLeGHEe-LvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHdd 469 (499)
T KOG0281|consen 395 VLEGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDD 469 (499)
T ss_pred HHhchHH-hhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCC
Confidence 9999877 8999999 568899999999999999987643311 1122344478888885 56789999999
Q ss_pred cEEEEEcCCCc
Q 001184 655 GIKILANADGL 665 (1130)
Q Consensus 655 ~i~iw~~~~~~ 665 (1130)
+|.|||+.++.
T Consensus 470 tILiWdFl~~~ 480 (499)
T KOG0281|consen 470 TILIWDFLNGP 480 (499)
T ss_pred eEEEEEcCCCC
Confidence 99999998773
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=268.27 Aligned_cols=291 Identities=18% Similarity=0.322 Sum_probs=232.0
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
++..|...|..+.||++|+|||+++.|.+..+|++.....++..+++.+|..+|..+.||||++ ++++|+.|..+.+|
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW 296 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence 6889999999999999999999999999999999987777777889999999999999999999 89999999999999
Q ss_pred e-cCCCeeeEec-CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeee
Q 001184 484 D-LSGRKLFQFE-GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGT 561 (1130)
Q Consensus 484 d-~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1130)
| .+|.+...+. +|...+. +++|.|||..+++|+.
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~--------------------------------------------sc~W~pDg~~~V~Gs~ 332 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVS--------------------------------------------SCAWCPDGFRFVTGSP 332 (519)
T ss_pred cCCcchhhhhcccCcCCCcc--------------------------------------------eeEEccCCceeEecCC
Confidence 9 7777766554 2233444 4455555555555543
Q ss_pred cCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEc
Q 001184 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN 641 (1130)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s 641 (1130)
|+.+..||.. |.......+.....+..+++++||+++++.+.|..|++++.++......+..+. +|+++..|
T Consensus 333 ----dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~---~its~~iS 404 (519)
T KOG0293|consen 333 ----DRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQ---PITSFSIS 404 (519)
T ss_pred ----CCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccC---ceeEEEEc
Confidence 4555555543 333444455455578899999999999999999999999998876665554433 69999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCC
Q 001184 642 KEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGA 721 (1130)
Q Consensus 642 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~ 721 (1130)
.+++++.+.-.+..+++||++.. ...+.+.||....
T Consensus 405 ~d~k~~LvnL~~qei~LWDl~e~-~lv~kY~Ghkq~~------------------------------------------- 440 (519)
T KOG0293|consen 405 KDGKLALVNLQDQEIHLWDLEEN-KLVRKYFGHKQGH------------------------------------------- 440 (519)
T ss_pred CCCcEEEEEcccCeeEEeecchh-hHHHHhhcccccc-------------------------------------------
Confidence 99999999999999999999855 5555554432210
Q ss_pred CccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCC
Q 001184 722 DSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQ 801 (1130)
Q Consensus 722 ~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 801 (1130)
++
T Consensus 441 -----------------------------------------------------------fi------------------- 442 (519)
T KOG0293|consen 441 -----------------------------------------------------------FI------------------- 442 (519)
T ss_pred -----------------------------------------------------------eE-------------------
Confidence 00
Q ss_pred CCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEe-cCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEE
Q 001184 802 NPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALS-KNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTF 879 (1130)
Q Consensus 802 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s-~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~ 879 (1130)
| .-||- .+.+++++|+ |++|+||+..+++++..+.+|...|++
T Consensus 443 ----------------------------------I-rSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNc 487 (519)
T KOG0293|consen 443 ----------------------------------I-RSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNC 487 (519)
T ss_pred ----------------------------------E-EeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeE
Confidence 0 11121 2457899999 899999999999999999999999999
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEEEee
Q 001184 880 LAFHPQDNNIIAIGMEDSTIQIYNVR 905 (1130)
Q Consensus 880 l~~sp~~~~~lasg~~dg~v~iwd~~ 905 (1130)
++|+|.+..++|+|++||+|+||-..
T Consensus 488 VswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 488 VSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred EecCCCCHHHhhccCCCCeEEEecCC
Confidence 99999999999999999999999765
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-30 Score=244.06 Aligned_cols=242 Identities=16% Similarity=0.289 Sum_probs=206.5
Q ss_pred eecCCCccEEEEEEcCC-CCEEEEEeCCCeEEEEEecCCccceeeeee-ecCCCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001184 404 IVKDSSISVSRVAWSPD-GNFIGVAFTKHLIHLYTYQGSNDLCQSLEI-DAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR 481 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spd-g~~las~~~d~~i~vwd~~~~~~~~~~~~~-~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~ 481 (1130)
.+.+|.+.|..++|+|- |..||+|+.|+.|++|+..++........+ .+|+..|++++|+|.|+ +|+++|.|.++.
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~--~La~aSFD~t~~ 86 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR--YLASASFDATVV 86 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc--EEEEeeccceEE
Confidence 57899999999999998 999999999999999999865444333233 57999999999999999 899999999999
Q ss_pred EEe-c--CCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCc---ceeeecCCCccEEEEEEecCCCe
Q 001184 482 VWD-L--SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG---SRVDYDAPGLWCTTMLYSADGSR 555 (1130)
Q Consensus 482 iwd-~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~ 555 (1130)
||. . +-+++.++.||...|.+++|+ .+|.+|++++.|+.|-+|.++... +...+..|...|..+.|.|...+
T Consensus 87 Iw~k~~~efecv~~lEGHEnEVK~Vaws--~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHENEVKCVAWS--ASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred EeecCCCceeEEeeeeccccceeEEEEc--CCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence 999 4 346789999999999999996 456899999999999999987543 44578889999999999999999
Q ss_pred EEEeeecCCCCcEEEEeeCC---CCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCC
Q 001184 556 LFSCGTSKEGDSHLVEWNES---EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGL 632 (1130)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 632 (1130)
|++++. |.+|++|+-. .-.+.+++.+|+. .+.+++|++.|.+|++++.|++++||...+. +. ..+.
T Consensus 165 L~S~SY----DnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~-~~~s 233 (312)
T KOG0645|consen 165 LFSCSY----DNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LS-GMHS 233 (312)
T ss_pred eEEecc----CCeEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCCceEEEecCCcceEeeeeccC-----cc-hhcc
Confidence 999998 9999999876 3457889999877 8999999999999999999999999997632 11 1233
Q ss_pred CCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001184 633 PSLPRLRFNKEGNLLVVTTADQGIKILANA 662 (1130)
Q Consensus 633 ~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~ 662 (1130)
..++.++|. ...|++++.|+.|+++.-.
T Consensus 234 r~~Y~v~W~--~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 234 RALYDVPWD--NGVIASGGGDDAIRLFKES 261 (312)
T ss_pred cceEeeeec--ccceEeccCCCEEEEEEec
Confidence 478889998 4479999999999999754
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-31 Score=291.41 Aligned_cols=245 Identities=19% Similarity=0.362 Sum_probs=224.8
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCc--------cc--------------------eeeeeeecCCCCeeEE
Q 001184 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSN--------DL--------------------CQSLEIDAHVGGVNDL 460 (1130)
Q Consensus 409 ~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~--------~~--------------------~~~~~~~~h~~~V~~i 460 (1130)
...++|..||+|++.||.|..|..|++|.+...+ .+ ....++.||.++|..+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 4579999999999999999999999999987321 00 1123578999999999
Q ss_pred EEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecC
Q 001184 461 AFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA 539 (1130)
Q Consensus 461 ~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 539 (1130)
.|+|+.+ +|++||+|++||+|. .+..++..++||..||+.+.|+| .|-+++|+|.|++-++|..+...+...+.+
T Consensus 458 sFsPd~r--fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P--~GyYFatas~D~tArLWs~d~~~PlRifag 533 (707)
T KOG0263|consen 458 SFSPDRR--FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP--RGYYFATASHDQTARLWSTDHNKPLRIFAG 533 (707)
T ss_pred eeccccc--ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC--CceEEEecCCCceeeeeecccCCchhhhcc
Confidence 9999999 899999999999999 88899999999999999999975 568999999999999999999999999999
Q ss_pred CCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001184 540 PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1130)
Q Consensus 540 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 619 (1130)
|-..|.|+.|.|+..|+++|+. |.++++||..+|..++.|.||.. +|.+++|+|+|++|++|++||.|.+||+.+
T Consensus 534 hlsDV~cv~FHPNs~Y~aTGSs----D~tVRlWDv~~G~~VRiF~GH~~-~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 534 HLSDVDCVSFHPNSNYVATGSS----DRTVRLWDVSTGNSVRIFTGHKG-PVTALAFSPCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred cccccceEEECCcccccccCCC----CceEEEEEcCCCcEEEEecCCCC-ceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence 9999999999999999999986 99999999999999999999877 999999999999999999999999999999
Q ss_pred CceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 620 VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 620 ~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
++++..+..|. +.|.++.|+.+|..||+|+.|++|++||+...
T Consensus 609 ~~~v~~l~~Ht--~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 609 GSLVKQLKGHT--GTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred Ccchhhhhccc--CceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999998874 48999999999999999999999999998654
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-27 Score=256.29 Aligned_cols=499 Identities=14% Similarity=0.164 Sum_probs=352.8
Q ss_pred CCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCe-eeEecCC-CcCEEEEeecccCCccEEEEEecCCcEEEEEccC
Q 001184 454 VGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRK-LFQFEGH-EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN 530 (1130)
Q Consensus 454 ~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~-~~~~~~h-~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~ 530 (1130)
...|.++||+.+.+ .||.+-.||.|-||+ ..+-. ...+.++ ...|.+++|. ++..|++.+.+|.|.-||+.+
T Consensus 25 Ps~I~slA~s~kS~--~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~---e~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSN--QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA---EGGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred ccceEEEEEeccCC--ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc---cCCeEEeecCCceEEEEeccc
Confidence 45699999999999 689999999999999 44433 3345554 4679999997 446899999999999999999
Q ss_pred CcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEe-cccCceeEEEEEcCCCCEEEEEeCC
Q 001184 531 VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYI-GFRKKSAGVVQFDTTRNRILAAGED 609 (1130)
Q Consensus 531 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d 609 (1130)
.+....+...+..|.+++.+|.+..++.++. +|.++.++...+.....-. ....+.+.++.|+|++..+++|+.|
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~~~l~Igcd----dGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D 175 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPENTILAIGCD----DGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID 175 (691)
T ss_pred CceeEEecCCCcceeEEEeCCccceEEeecC----CceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC
Confidence 9999999999999999999999999999875 7888888887776654322 2233589999999999999999999
Q ss_pred CcEEEEeCCCCceeEEEec-----cC-CCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccc
Q 001184 610 NQIKFWDMDNVNMLTSTEA-----EG-GLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRAST 683 (1130)
Q Consensus 610 g~i~vwd~~~~~~~~~~~~-----~~-~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1130)
|.|++||...+..+..... .. ...-|.++.|-.++ .+++|...|+|.+||...+ .+.+..
T Consensus 176 g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~g-TLiqS~------------ 241 (691)
T KOG2048|consen 176 GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFG-TLIQSH------------ 241 (691)
T ss_pred ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCc-chhhhh------------
Confidence 9999999999987773222 11 22245667776555 6899999999999998776 222211
Q ss_pred cccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCC
Q 001184 684 EMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPES 763 (1130)
Q Consensus 684 ~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 763 (1130)
T Consensus 242 -------------------------------------------------------------------------------- 241 (691)
T KOG2048|consen 242 -------------------------------------------------------------------------------- 241 (691)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEec
Q 001184 764 TDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSK 843 (1130)
Q Consensus 764 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~ 843 (1130)
..|.+.|.+++.++++++++++|-|+.+..|...+... -|- .......|...+++++..+
T Consensus 242 ~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~-------------~wv-------~~~~r~~h~hdvrs~av~~ 301 (691)
T KOG2048|consen 242 SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS-------------EWV-------INSRRDLHAHDVRSMAVIE 301 (691)
T ss_pred hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc-------------cee-------eeccccCCcccceeeeeec
Confidence 12678889999999999999999999998876544211 022 1122236889999999988
Q ss_pred CCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEE-EEEeCCCCcEEEEEeCCCcEEEEEeecCe---------EEEE
Q 001184 844 NDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTF-LAFHPQDNNIIAIGMEDSTIQIYNVRVDE---------VKTK 912 (1130)
Q Consensus 844 dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~-l~~sp~~~~~lasg~~dg~v~iwd~~~~~---------~~~~ 912 (1130)
+ .+++|+ |..+.+-.....+...-......+-.+ +...| .++|..--.+..+.+|.+.+.. +.+-
T Consensus 302 ~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~--~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl 377 (691)
T KOG2048|consen 302 N--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAP--ENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKL 377 (691)
T ss_pred c--eEEecceeeEEEEccccccCchhhhccccccccceeecCc--cceEEEEeccccccceeccCcccccccChhhheee
Confidence 8 677776 777776655432111111000001111 22233 3445555566778888876541 1222
Q ss_pred EecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE-E-cCCcEEE
Q 001184 913 LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-N-HETQLAI 990 (1130)
Q Consensus 913 l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~-~d~~i~v 990 (1130)
.......|.+-+.||||++++.+.-. .+++|.+............... ...-.+..+.|+-|+..++. + ....+.+
T Consensus 378 ~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~~v~~~~-~~~~~a~~i~ftid~~k~~~~s~~~~~le~ 455 (691)
T KOG2048|consen 378 FTKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPNVKVINVDDVP-LALLDASAISFTIDKNKLFLVSKNIFSLEE 455 (691)
T ss_pred ecCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcceeEEEeccch-hhhccceeeEEEecCceEEEEecccceeEE
Confidence 22234569999999999999977643 4788887763322222111110 11135778888888877665 4 5777888
Q ss_pred EECCCcee--eeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEE
Q 001184 991 YDGSKMEC--IRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVV 1068 (1130)
Q Consensus 991 ~d~~~~~~--~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1130)
+++.+... +..+... +--..|..+..|+||+|||+.+.+|.|.+|++++++....... -...+++.
T Consensus 456 ~el~~ps~kel~~~~~~-~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~r-----------ln~~vTa~ 523 (691)
T KOG2048|consen 456 FELETPSFKELKSIQSQ-AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVR-----------LNIDVTAA 523 (691)
T ss_pred EEecCcchhhhhccccc-cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhc-----------cCcceeee
Confidence 88775432 2222222 1256899999999999999999999999999999887655421 11456778
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEeCC
Q 001184 1069 TSHPQEPNQLAVGLTDGSVKVIEPS 1093 (1130)
Q Consensus 1069 ~~~~~~~~~l~s~~~Dg~v~vW~~~ 1093 (1130)
+++|.+...|+.+..|+.|.-+|+.
T Consensus 524 ~~~~~~~~~lvvats~nQv~efdi~ 548 (691)
T KOG2048|consen 524 AFSPFVRNRLVVATSNNQVFEFDIE 548 (691)
T ss_pred eccccccCcEEEEecCCeEEEEecc
Confidence 8887778899999999999999994
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.6e-32 Score=277.32 Aligned_cols=291 Identities=18% Similarity=0.268 Sum_probs=247.2
Q ss_pred ccceeeec-cCCCCEEEEEEec-CCCeEEEEEeCcCeEEEEeCCC-CceeecccceeeeccccccceeeeeecCCCccEE
Q 001184 337 PRAVACTM-HQGSSVVSMDFHP-FHHTLLVVGCGDGEITLWDVGL-RERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVS 413 (1130)
Q Consensus 337 ~~~~~~~~-~h~~~V~~v~fsp-dg~~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 413 (1130)
|..+++++ +|...|+++.|.| .+ .||++|+.|+.|+||++.. +++++ ++.+|..+|.
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~-hLlLS~gmD~~vklW~vy~~~~~lr-------------------tf~gH~k~Vr 262 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKG-HLLLSGGMDGLVKLWNVYDDRRCLR-------------------TFKGHRKPVR 262 (503)
T ss_pred cHhheeeccCCccccchhhhcccee-eEEEecCCCceEEEEEEecCcceeh-------------------hhhcchhhhh
Confidence 56666776 4999999999999 56 5899999999999999987 66665 5889999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeE
Q 001184 414 RVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQ 492 (1130)
Q Consensus 414 ~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~ 492 (1130)
.++|+++|..+.+++.|+.|++||+++|+++.. +. ....++++.|.||+.+ .+++|+.|+.|+.|| .+++.++.
T Consensus 263 d~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~---f~-~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvqe 337 (503)
T KOG0282|consen 263 DASFNNCGTSFLSASFDRFLKLWDTETGQVLSR---FH-LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQE 337 (503)
T ss_pred hhhccccCCeeeeeecceeeeeeccccceEEEE---Ee-cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHHH
Confidence 999999999999999999999999999997753 22 3446899999999955 899999999999999 89999999
Q ss_pred ecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeee-cCCCccEEEEEEecCCCeEEEeeecCCCCcEEEE
Q 001184 493 FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY-DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1130)
Q Consensus 493 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1130)
+..|-+.|..+.|. +++..+++.++|+.+++|+.+..-.+... ....+...++...|++.+++.-+. ++.|.+
T Consensus 338 Yd~hLg~i~~i~F~--~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~i 411 (503)
T KOG0282|consen 338 YDRHLGAILDITFV--DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIAI 411 (503)
T ss_pred HHhhhhheeeeEEc--cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEEE
Confidence 99999999999985 46689999999999999999876665432 333446778999999999998776 889999
Q ss_pred eeCCCC---ceeEEEecccCcee-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcC-CCCE
Q 001184 572 WNESEG---ALKRTYIGFRKKSA-GVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK-EGNL 646 (1130)
Q Consensus 572 wd~~~~---~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~-~~~~ 646 (1130)
+.+... ...+.+.||..... ..+.|||||.+|++|+.||.+.+||.++-+.+..++.+.. .+..+.|+| ....
T Consensus 412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~--~ci~v~wHP~e~Sk 489 (503)
T KOG0282|consen 412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ--PCIGVDWHPVEPSK 489 (503)
T ss_pred EecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc--ceEEEEecCCCcce
Confidence 986542 23456777765433 3489999999999999999999999999999999988754 789999999 4568
Q ss_pred EEEEeCCCcEEEEE
Q 001184 647 LVVTTADQGIKILA 660 (1130)
Q Consensus 647 l~~~~~dg~i~iw~ 660 (1130)
+|+++.||.|++|+
T Consensus 490 vat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 490 VATCGWDGLIKIWD 503 (503)
T ss_pred eEecccCceeEecC
Confidence 99999999999996
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.2e-32 Score=270.17 Aligned_cols=284 Identities=15% Similarity=0.242 Sum_probs=247.6
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCC
Q 001184 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGR 488 (1130)
Q Consensus 409 ~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~ 488 (1130)
+..|..|.|.|+|+.|++|+..|.+.+|+..+- .....++.|..+|+++.|+++|. +++||+.+|.|++|+....
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f---nFEtilQaHDs~Vr~m~ws~~g~--wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF---NFETILQAHDSPVRTMKWSHNGT--WMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCcee---eHHHHhhhhcccceeEEEccCCC--EEEEcCCCceEEecccchh
Confidence 457999999999999999999999999997542 22224678999999999999999 8999999999999997777
Q ss_pred eeeEecCCC-cCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCc
Q 001184 489 KLFQFEGHE-APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDS 567 (1130)
Q Consensus 489 ~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 567 (1130)
.++.+.+|. ..|++++|+|. ...++++++||+|+|||.........+.+|+-.|.++.|.|.-..+++++. |.
T Consensus 171 nVk~~~ahh~eaIRdlafSpn--DskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgsk----Dn 244 (464)
T KOG0284|consen 171 NVKIIQAHHAEAIRDLAFSPN--DSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSK----DN 244 (464)
T ss_pred hhHHhhHhhhhhhheeccCCC--CceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccC----Cc
Confidence 777777666 89999999873 368999999999999999999988889999999999999999999999986 77
Q ss_pred EEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcC-CCCE
Q 001184 568 HLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK-EGNL 646 (1130)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~-~~~~ 646 (1130)
.|++||.+++.++.++.+|.. .|..+.|++++++|+++|.|..++++|+++.+.+..+..|.. .+.++.|+| ...+
T Consensus 245 lVKlWDprSg~cl~tlh~HKn-tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk--dv~~~~WhP~~~~l 321 (464)
T KOG0284|consen 245 LVKLWDPRSGSCLATLHGHKN-TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKK--DVTSLTWHPLNESL 321 (464)
T ss_pred eeEeecCCCcchhhhhhhccc-eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchh--hheeeccccccccc
Confidence 999999999999999999877 899999999999999999999999999998888888776654 799999999 6778
Q ss_pred EEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCcccc
Q 001184 647 LVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAAR 726 (1130)
Q Consensus 647 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1130)
|.+|+.||.|..|.+..... +.. +
T Consensus 322 ftsgg~Dgsvvh~~v~~~~p-~~~-------------------------i------------------------------ 345 (464)
T KOG0284|consen 322 FTSGGSDGSVVHWVVGLEEP-LGE-------------------------I------------------------------ 345 (464)
T ss_pred eeeccCCCceEEEecccccc-ccC-------------------------C------------------------------
Confidence 99999999999998762210 000 0
Q ss_pred CCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCC
Q 001184 727 GIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNR 798 (1130)
Q Consensus 727 ~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~ 798 (1130)
..+|...|.+++|.|=|..|++++.|.++++|.-..
T Consensus 346 ------------------------------------~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 346 ------------------------------------PPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred ------------------------------------CcccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence 034889999999999999999999999999997443
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=276.84 Aligned_cols=282 Identities=26% Similarity=0.422 Sum_probs=249.1
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
+|.+.|++++|+|+++ +|++|+.||.|++|++.+++... .+..|...+.++.|+|++++|
T Consensus 7 ~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~-------------------~~~~~~~~i~~~~~~~~~~~l 66 (289)
T cd00200 7 GHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLR-------------------TLKGHTGPVRDVAASADGTYL 66 (289)
T ss_pred ccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEE-------------------EEecCCcceeEEEECCCCCEE
Confidence 5999999999999998 58899999999999998876443 356888899999999999999
Q ss_pred EEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEE
Q 001184 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1130)
++++.||.|++||+.+++... .+..|...|.++.|+++++ ++++++.|+.|++|| .+++.+..+..|...+.++
T Consensus 67 ~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 141 (289)
T cd00200 67 ASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141 (289)
T ss_pred EEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEE
Confidence 999999999999999875444 5678998999999999987 788888899999999 6688888898999999999
Q ss_pred eecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEE
Q 001184 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1130)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1130)
+|++. +.++++++.|+.|++||++..+....+..+...+.++.|+|+++.+++++. ++.|++||..+++.+..+
T Consensus 142 ~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~ 215 (289)
T cd00200 142 AFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKCLGTL 215 (289)
T ss_pred EEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCceecch
Confidence 99765 578888888999999999988888888888889999999999999998875 889999999998888888
Q ss_pred ecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001184 584 IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1130)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~ 660 (1130)
..+.. .+.++.|++++.++++++.||.|++||+.+++....+..+. ..+.+++|+|+++++++++.|+.+++|+
T Consensus 216 ~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 216 RGHEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT--NSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred hhcCC-ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccC--CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 76655 78999999998888888889999999999988888877443 3799999999999999999999999995
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=289.94 Aligned_cols=291 Identities=27% Similarity=0.405 Sum_probs=246.2
Q ss_pred CccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCC
Q 001184 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1130)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1130)
+...|.++.|+++|+.+++++.++.+++|+...... .+.. ...+|...|..++|+||+
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--------------------~~~~--~l~~h~~~v~~~~fs~d~ 215 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--------------------NLLR--ELSGHTRGVSDVAFSPDG 215 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--------------------hhhc--cccccccceeeeEECCCC
Confidence 467889999999999999999999999998632110 0111 113799999999999999
Q ss_pred CEEEEEe-CCeEEEEEC-CCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEE
Q 001184 846 SYVMSAG-GGKVSLFNM-MNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGL 923 (1130)
Q Consensus 846 ~~la~~~-dg~i~iwd~-~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 923 (1130)
+++++++ |++|+|||+ ..+.+++++.+|...|++++|+| .++++++|+.|++|+|||+.+++++..+.+|.+.|+++
T Consensus 216 ~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~ 294 (456)
T KOG0266|consen 216 SYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGL 294 (456)
T ss_pred cEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEE
Confidence 9999998 899999999 66799999999999999999999 66999999999999999999999999999999999999
Q ss_pred EEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCC-CeEEEEEcCCCcEEEEE-cCCcEEEEECCCceeeee
Q 001184 924 AFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPV-GETRVQFHSDQVRLLVN-HETQLAIYDGSKMECIRQ 1001 (1130)
Q Consensus 924 ~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~~ 1001 (1130)
+|++|+++|++++.|+.|++||+.++... ........... .+..+.|+|++.+++++ .|+.+++||+..+..+..
T Consensus 295 ~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~ 371 (456)
T KOG0266|consen 295 AFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGT 371 (456)
T ss_pred EECCCCCEEEEcCCCccEEEEECCCCcee---eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceee
Confidence 99999999999999999999999997743 22222333323 78999999999999995 577999999999999999
Q ss_pred eecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEE
Q 001184 1002 WVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVG 1081 (1130)
Q Consensus 1002 ~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 1081 (1130)
+.++......+.+..++++++++++|+.|+.|++||+.++..+..+..+. ...+..+.++|. ..+++++
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~----------~~~~~~~~~~~~-~~~~~s~ 440 (456)
T KOG0266|consen 372 YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS----------KAAVSDLSSHPT-ENLIASS 440 (456)
T ss_pred ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC----------CCceeccccCCC-cCeeeec
Confidence 98885321356677778999999999999999999999999888887441 234556788885 7789998
Q ss_pred e--CCCcEEEEeCC
Q 001184 1082 L--TDGSVKVIEPS 1093 (1130)
Q Consensus 1082 ~--~Dg~v~vW~~~ 1093 (1130)
+ .|+.+++|...
T Consensus 441 s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 441 SFEGDGLIRLWKYD 454 (456)
T ss_pred CcCCCceEEEecCC
Confidence 8 69999999864
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-31 Score=246.85 Aligned_cols=284 Identities=19% Similarity=0.252 Sum_probs=250.4
Q ss_pred ccCCCCEEEEEEec---CCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC
Q 001184 344 MHQGSSVVSMDFHP---FHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1130)
Q Consensus 344 ~~h~~~V~~v~fsp---dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 420 (1130)
-+|..+|..++||| +| ++|++++.||.--+-+=++|..+. ++.||.++|.+..+..|
T Consensus 11 ~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwig-------------------tfeghkgavw~~~l~~n 70 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIG-------------------TFEGHKGAVWSATLNKN 70 (334)
T ss_pred cCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEE-------------------eeeccCcceeeeecCch
Confidence 36999999999995 67 689999999998888888888886 58899999999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCeeeEecCCCc
Q 001184 421 GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEA 498 (1130)
Q Consensus 421 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~~~~~~h~~ 498 (1130)
...-|+++.|-+.+|||.-+|..+. .+ .|..-|.+++|+.|.+ +|++|+.++.+||+| ....+...+.+|.+
T Consensus 71 a~~aasaaadftakvw~a~tgdelh---sf-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~ghtg 144 (334)
T KOG0278|consen 71 ATRAASAAADFTAKVWDAVTGDELH---SF-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISGHTG 144 (334)
T ss_pred hhhhhhhcccchhhhhhhhhhhhhh---hh-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcCCCC
Confidence 9999999999999999999998776 33 5889999999999999 799999999999999 44556788999999
Q ss_pred CEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc
Q 001184 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1130)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1130)
.|..+.|.... +.+++.+.|++||+||.+++.....+... .+|+++.++++|++|.++- .+.|..||..+..
T Consensus 145 ~Ir~v~wc~eD--~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~ilTia~-----gssV~Fwdaksf~ 216 (334)
T KOG0278|consen 145 GIRTVLWCHED--KCILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGRILTIAY-----GSSVKFWDAKSFG 216 (334)
T ss_pred cceeEEEeccC--ceEEeeccCCceEEEEeccCcEEEEEecC-CCCcceeeccCCCEEEEec-----CceeEEecccccc
Confidence 99999997544 67888899999999999999888877644 4699999999999988774 6789999999999
Q ss_pred eeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEE
Q 001184 579 LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKI 658 (1130)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~i 658 (1130)
+++.+.... .|.+..++|+...+++|++|+.++.||..+++.+... ..++.++|.|+.|+|+|...++|+.||+|++
T Consensus 217 ~lKs~k~P~--nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~gpVhcVrFSPdGE~yAsGSEDGTirl 293 (334)
T KOG0278|consen 217 LLKSYKMPC--NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFGPVHCVRFSPDGELYASGSEDGTIRL 293 (334)
T ss_pred ceeeccCcc--ccccccccCCCceEEecCcceEEEEEeccCCceeeec-ccCCCCceEEEEECCCCceeeccCCCceEEE
Confidence 998887644 5888899999999999999999999999999988875 2344558999999999999999999999999
Q ss_pred EEcCCC
Q 001184 659 LANADG 664 (1130)
Q Consensus 659 w~~~~~ 664 (1130)
|....+
T Consensus 294 WQt~~~ 299 (334)
T KOG0278|consen 294 WQTTPG 299 (334)
T ss_pred EEecCC
Confidence 998665
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-31 Score=270.31 Aligned_cols=287 Identities=18% Similarity=0.278 Sum_probs=242.5
Q ss_pred CCCccceEEEEEec-cCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEe
Q 001184 764 TDSASKVARLLYTN-SGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALS 842 (1130)
Q Consensus 764 ~~~~~~i~~l~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s 842 (1130)
.+|...|.++.|.| .+..+++++.|+.|+||++ |+ .+.++.... +|..+|..++|+
T Consensus 211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~v-------------------y~--~~~~lrtf~--gH~k~Vrd~~~s 267 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNV-------------------YD--DRRCLRTFK--GHRKPVRDASFN 267 (503)
T ss_pred cCCccccchhhhccceeeEEEecCCCceEEEEEE-------------------ec--Ccceehhhh--cchhhhhhhhcc
Confidence 45999999999999 8899999999999999974 33 233333222 799999999999
Q ss_pred cCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCee
Q 001184 843 KNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHIT 921 (1130)
Q Consensus 843 ~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 921 (1130)
++|..+.+++ |+.|++||+++|+++..+.. ...++|+.|.|++.+++++|+.|+.|+.||+++++.++.+..|-+.|.
T Consensus 268 ~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~ 346 (503)
T KOG0282|consen 268 NCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAIL 346 (503)
T ss_pred ccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhhee
Confidence 9999999998 99999999999999999974 567899999996668999999999999999999999999999999999
Q ss_pred EEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE-EcCCcEEEEECCC---ce
Q 001184 922 GLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGSK---ME 997 (1130)
Q Consensus 922 ~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~---~~ 997 (1130)
.+.|-++|+++++.+.|++++||+....-. +............++..+|.+.++++ +.|+.+.+|.+.. ..
T Consensus 347 ~i~F~~~g~rFissSDdks~riWe~~~~v~-----ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~n 421 (503)
T KOG0282|consen 347 DITFVDEGRRFISSSDDKSVRIWENRIPVP-----IKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLN 421 (503)
T ss_pred eeEEccCCceEeeeccCccEEEEEcCCCcc-----chhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccC
Confidence 999999999999999999999999987433 22222222245678999999999999 7899999998753 22
Q ss_pred eeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCE
Q 001184 998 CIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQ 1077 (1130)
Q Consensus 998 ~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1077 (1130)
..+.+.+|.. .+--..+.|||||++|++|+.||.+.+||..+-+++..+.. |.-.++.+.|+|.....
T Consensus 422 kkK~feGh~v-aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka-----------h~~~ci~v~wHP~e~Sk 489 (503)
T KOG0282|consen 422 KKKRFEGHSV-AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA-----------HDQPCIGVDWHPVEPSK 489 (503)
T ss_pred Hhhhhcceec-cCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcccc-----------CCcceEEEEecCCCcce
Confidence 3344555533 44556889999999999999999999999999999988874 34567889999999999
Q ss_pred EEEEeCCCcEEEEe
Q 001184 1078 LAVGLTDGSVKVIE 1091 (1130)
Q Consensus 1078 l~s~~~Dg~v~vW~ 1091 (1130)
+++|+.||.|++|+
T Consensus 490 vat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 490 VATCGWDGLIKIWD 503 (503)
T ss_pred eEecccCceeEecC
Confidence 99999999999996
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=304.22 Aligned_cols=292 Identities=14% Similarity=0.186 Sum_probs=235.9
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC-CCC
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGN 422 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~ 422 (1130)
..|...|++++|+|+|+ ++|+|+.|+.|+|||..+...... . ...+...+ .+...|.+++|+| ++.
T Consensus 480 ~~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~----------~~~~~~~~-~~~~~v~~l~~~~~~~~ 546 (793)
T PLN00181 480 LNSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-D----------IHYPVVEL-ASRSKLSGICWNSYIKS 546 (793)
T ss_pred cCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-c----------cccceEEe-cccCceeeEEeccCCCC
Confidence 34899999999999998 599999999999999864211000 0 00000012 2346799999987 578
Q ss_pred EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEec-CCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCE
Q 001184 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY-PNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPV 500 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~-d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v 500 (1130)
+||+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++|| .++..+..+..+ ..|
T Consensus 547 ~las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v 620 (793)
T PLN00181 547 QVASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-ANI 620 (793)
T ss_pred EEEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CCe
Confidence 99999999999999999876544 5789999999999997 667 899999999999999 778888888754 678
Q ss_pred EEEeecccCCccEEEEEecCCcEEEEEccCCc-ceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC---
Q 001184 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG-SRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE--- 576 (1130)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--- 576 (1130)
.++.|.+ +++.+|++|+.||.|++||++... ....+..|...|.++.|. ++.++++++. |+.|++||+..
T Consensus 621 ~~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~~ 694 (793)
T PLN00181 621 CCVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSIS 694 (793)
T ss_pred EEEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCcc
Confidence 8998854 456899999999999999998765 355677888899999997 7888999886 89999999874
Q ss_pred ---CceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEec-----------cCCCCCcceEEEcC
Q 001184 577 ---GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA-----------EGGLPSLPRLRFNK 642 (1130)
Q Consensus 577 ---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----------~~~~~~i~~v~~s~ 642 (1130)
...+..+.+|.. .+.+++|++++++|++|+.|+.|++|+......+..... ..+...|.+++|+|
T Consensus 695 ~~~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~ 773 (793)
T PLN00181 695 GINETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG 773 (793)
T ss_pred ccCCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC
Confidence 356778888765 788899999999999999999999999876654433221 22233589999999
Q ss_pred CCCEEEEEeCCCcEEEEEc
Q 001184 643 EGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~ 661 (1130)
++..|++|+.||.|+||++
T Consensus 774 ~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 774 QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCeEEEecCCCcEEEEec
Confidence 9999999999999999985
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-29 Score=233.29 Aligned_cols=248 Identities=20% Similarity=0.275 Sum_probs=221.2
Q ss_pred eeeeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcE
Q 001184 401 QAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480 (1130)
Q Consensus 401 ~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v 480 (1130)
...++..|+++|..+.|+-||+|.++++.|++|++|+...|.+++ ++.+|...|.+++.+.|+. .+++|+.|+.|
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v 83 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAV 83 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceE
Confidence 344688999999999999999999999999999999999998776 7899999999999999998 69999999999
Q ss_pred EEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCC--cceeeecCCCccEEEEEEecCCCeEE
Q 001184 481 RVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV--GSRVDYDAPGLWCTTMLYSADGSRLF 557 (1130)
Q Consensus 481 ~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1130)
.+|| .+|+.++.|.+|.+.|+.+.|+ .+...+++|+.|..+++||.++. ++++.+......|.++..+ +..++
T Consensus 84 ~vwDV~TGkv~Rr~rgH~aqVNtV~fN--eesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIv 159 (307)
T KOG0316|consen 84 QVWDVNTGKVDRRFRGHLAQVNTVRFN--EESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIV 159 (307)
T ss_pred EEEEcccCeeeeecccccceeeEEEec--CcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEE
Confidence 9999 9999999999999999999995 45579999999999999998764 4556666667778888775 56788
Q ss_pred EeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcce
Q 001184 558 SCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPR 637 (1130)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~ 637 (1130)
+++. ||+++.||++.|+....+.++ +|++++|+++++..++++.|+++++.|-.+|+++....+|....--..
T Consensus 160 aGS~----DGtvRtydiR~G~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykld 232 (307)
T KOG0316|consen 160 AGSV----DGTVRTYDIRKGTLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLD 232 (307)
T ss_pred eecc----CCcEEEEEeecceeehhhcCC---cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeee
Confidence 8876 999999999999988777765 899999999999999999999999999999999999998876555567
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 638 LRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 638 v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
++++.....+++|+.||.+.+||+.+.
T Consensus 233 c~l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 233 CCLNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred eeecccceeEEeccCCceEEEEEeccc
Confidence 788888889999999999999999776
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=251.04 Aligned_cols=293 Identities=19% Similarity=0.280 Sum_probs=244.8
Q ss_pred CccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCC
Q 001184 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1130)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1130)
..+.+.+..|+|||+++++++-||.|.+|++.+++...+-+-.+ +.... -+...|.|+.||.|.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQA---------qd~fM-------Mmd~aVlci~FSRDs 275 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQA---------QDNFM-------MMDDAVLCISFSRDS 275 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhh---------hccee-------ecccceEEEeecccH
Confidence 45667789999999999999999999999988776544332211 11111 368899999999999
Q ss_pred CEEEEEe-CCeEEEEECCCceeEEEEe-CCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEE
Q 001184 846 SYVMSAG-GGKVSLFNMMNFKVMTTFM-SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGL 923 (1130)
Q Consensus 846 ~~la~~~-dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 923 (1130)
..+|+|+ ||.|++|.+.+|.|++.+. .|...|+|+.||. |+..+.+++.|.+++|.-+++|+++..++||+.-|+..
T Consensus 276 EMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a 354 (508)
T KOG0275|consen 276 EMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEA 354 (508)
T ss_pred HHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccce
Confidence 9999999 9999999999999999998 8999999999999 77778899999999999999999999999999999999
Q ss_pred EEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCC--cEEEEEcCCcEEEEECCCceeeee
Q 001184 924 AFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQ--VRLLVNHETQLAIYDGSKMECIRQ 1001 (1130)
Q Consensus 924 ~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~--~~l~~~~d~~i~v~d~~~~~~~~~ 1001 (1130)
.|++||.++++++.||+|++|+.++.++...... ......|..+..-|.+ .++++...++++|.++. |+.++.
T Consensus 355 ~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~----~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrs 429 (508)
T KOG0275|consen 355 TFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP----LGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRS 429 (508)
T ss_pred EEcCCCCeEEEecCCccEEEecCcchhhhhhccC----CCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEee
Confidence 9999999999999999999999999887654322 1233566666665543 34555678899999986 778888
Q ss_pred eecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEE
Q 001184 1002 WVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVG 1081 (1130)
Q Consensus 1002 ~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 1081 (1130)
+.......+...+.+.||.|.++++.++|+.++.+.+.+|.+...+..+. ..++.+..+|. .++|++=
T Consensus 430 fsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhE-----------kdvIGl~HHPH-qNllAsY 497 (508)
T KOG0275|consen 430 FSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHE-----------KDVIGLTHHPH-QNLLASY 497 (508)
T ss_pred eccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccc-----------ccccccccCcc-cchhhhh
Confidence 87666667788889999999999999999999999999999988876544 34555888884 7899999
Q ss_pred eCCCcEEEEeC
Q 001184 1082 LTDGSVKVIEP 1092 (1130)
Q Consensus 1082 ~~Dg~v~vW~~ 1092 (1130)
++||.+++|..
T Consensus 498 sEDgllKLWkp 508 (508)
T KOG0275|consen 498 SEDGLLKLWKP 508 (508)
T ss_pred cccchhhhcCC
Confidence 99999999963
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-28 Score=221.80 Aligned_cols=310 Identities=18% Similarity=0.231 Sum_probs=241.4
Q ss_pred ceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEc
Q 001184 339 AVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1130)
Q Consensus 339 ~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 418 (1130)
+.+.++.....|.+|+|+|.|. +.|+|+...+.+|-.+..-...+. -.+.....+....+-.+.|.+.|.|.+||
T Consensus 24 ~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~----~hea~~~pp~v~~kr~khhkgsiyc~~ws 98 (350)
T KOG0641|consen 24 EAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRH----AHEAAKQPPSVLCKRNKHHKGSIYCTAWS 98 (350)
T ss_pred EEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCccc----ccccccCCCeEEeeeccccCccEEEEEec
Confidence 4566788899999999999998 799999999999886543211110 00000001112223456899999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEec--CCccceeeeeeecCCCCeeEEEEecC---CCceEEEEEc-CCCcEEEEe-cCCCeee
Q 001184 419 PDGNFIGVAFTKHLIHLYTYQ--GSNDLCQSLEIDAHVGGVNDLAFSYP---NKQLCIVTCG-DDKLIRVWD-LSGRKLF 491 (1130)
Q Consensus 419 pdg~~las~~~d~~i~vwd~~--~~~~~~~~~~~~~h~~~V~~i~~s~d---~~~l~l~s~s-~d~~v~iwd-~~~~~~~ 491 (1130)
|+|++||+|+.|++|++.-.. +.+......++.-|.+.|.+++|..+ +.. +|++++ .|..|++-| .+|+..+
T Consensus 99 ~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~~~ 177 (350)
T KOG0641|consen 99 PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQGFH 177 (350)
T ss_pred CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCcce
Confidence 999999999999999986554 43444455568889999999999764 222 566654 588899999 9999999
Q ss_pred EecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecC-------CCccEEEEEEecCCCeEEEeeecCC
Q 001184 492 QFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA-------PGLWCTTMLYSADGSRLFSCGTSKE 564 (1130)
Q Consensus 492 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~~~~ 564 (1130)
.+.||++-|.++- +-++-.+++|+.|.+|++||++-..+...+.. ....|.+++..|.|++|+++..
T Consensus 178 a~sghtghilaly---swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~--- 251 (350)
T KOG0641|consen 178 ALSGHTGHILALY---SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA--- 251 (350)
T ss_pred eecCCcccEEEEE---EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC---
Confidence 9999999998874 22447899999999999999998777665432 1247899999999999999876
Q ss_pred CCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--ceeEEEeccCCCCCcceEEEcC
Q 001184 565 GDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV--NMLTSTEAEGGLPSLPRLRFNK 642 (1130)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~i~~v~~s~ 642 (1130)
+....+||++.++.++.|..|.. .|.++.|+|...++++++.|..|++-|+... ..+..+-...+...+..+.|+|
T Consensus 252 -dssc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~ 329 (350)
T KOG0641|consen 252 -DSSCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHP 329 (350)
T ss_pred -CCceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecC
Confidence 88899999999999999998776 8999999999999999999999999998642 1122222223444678899999
Q ss_pred CCCEEEEEeCCCcEEEEEcC
Q 001184 643 EGNLLVVTTADQGIKILANA 662 (1130)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~~ 662 (1130)
..-.+++.+.|.++.+|.+.
T Consensus 330 ~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 330 QDFSFISSSADKTATLWALN 349 (350)
T ss_pred ccceeeeccCcceEEEeccC
Confidence 99889999999999999763
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-29 Score=256.35 Aligned_cols=281 Identities=20% Similarity=0.293 Sum_probs=236.9
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
..+.|++++|||...+=+|+.+ .-.+.||+..+....+ .+......|.++.|-.||++||
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k-------------------~~srFk~~v~s~~fR~DG~Lla 84 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRK-------------------TFSRFKDVVYSVDFRSDGRLLA 84 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhh-------------------hHHhhccceeEEEeecCCeEEE
Confidence 4578999999996654344433 3379999998876654 2334566899999999999999
Q ss_pred EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEe
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVC 504 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~ 504 (1130)
+|...|.|+|||+++...++ .+.+|+.+|..+.|+|++.. .+++|++|+.+++|| .+......+.+|++.|.+.+
T Consensus 85 aGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~ 160 (487)
T KOG0310|consen 85 AGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD 160 (487)
T ss_pred ccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence 99999999999977644444 57899999999999998876 899999999999999 44555558899999999999
Q ss_pred ecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCC-ceeEEE
Q 001184 505 PHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG-ALKRTY 583 (1130)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~ 583 (1130)
++|.. +.+++|||.||.|++||++.......--.|+.+|..+.+-|.|..+++++ ...+++||+.+| +.+..+
T Consensus 161 ~~~~~-~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-----Gn~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 161 ISPAN-DHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-----GNSVKVWDLTTGGQLLTSM 234 (487)
T ss_pred cccCC-CeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-----CCeEEEEEecCCceehhhh
Confidence 98754 47999999999999999998865555556889999999999999999997 678999999855 455555
Q ss_pred ecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001184 584 IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1130)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~ 660 (1130)
..|+. .|+|+++..++.+|++|+-|+.+++||+.+.+.+..+...+ +|.+++.+|++..++.|..+|.+.+-+
T Consensus 235 ~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~---pvLsiavs~dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 235 FNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG---PVLSIAVSPDDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred hcccc-eEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc---ceeeEEecCCCceEEEecccceeeeeh
Confidence 55655 89999999999999999999999999999999999888765 699999999999999999999987764
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=252.33 Aligned_cols=230 Identities=20% Similarity=0.313 Sum_probs=202.7
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCC
Q 001184 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG 487 (1130)
Q Consensus 409 ~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~ 487 (1130)
...|.|+.+ |...+++|..|.+|+|||..+-.+++ .+.||++.|.|+.|. .+ ++++|+.|.+|+||| .+|
T Consensus 197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred CCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccCC
Confidence 457999988 45689999999999999999877665 689999999999995 44 899999999999999 999
Q ss_pred CeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcce---eeecCCCccEEEEEEecCCCeEEEeeecCC
Q 001184 488 RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR---VDYDAPGLWCTTMLYSADGSRLFSCGTSKE 564 (1130)
Q Consensus 488 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 564 (1130)
+++.++.+|...|..+.|+. .++++++.|.++.+||+.....+ ..+.+|...|+.+.|+ .+++++++.
T Consensus 268 e~l~tlihHceaVLhlrf~n----g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASg--- 338 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFSN----GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASG--- 338 (499)
T ss_pred chhhHHhhhcceeEEEEEeC----CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecC---
Confidence 99999999999999999843 58999999999999999877643 3567888899999886 458998875
Q ss_pred CCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCC
Q 001184 565 GDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEG 644 (1130)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~ 644 (1130)
|.+|++|+..+++.++++.+|.. .+.|+.+ .++++++|+.|.+|++||+..|.++..+++|.. -|.++.|. .
T Consensus 339 -DRTikvW~~st~efvRtl~gHkR-GIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRFd--~ 410 (499)
T KOG0281|consen 339 -DRTIKVWSTSTCEFVRTLNGHKR-GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFD--N 410 (499)
T ss_pred -CceEEEEeccceeeehhhhcccc-cceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheeec--C
Confidence 99999999999999999999877 6777666 578999999999999999999999999988765 68999996 5
Q ss_pred CEEEEEeCCCcEEEEEcCCC
Q 001184 645 NLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 645 ~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+.+++|+.||+|++||+..+
T Consensus 411 krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 411 KRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred ceeeeccccceEEEEecccc
Confidence 67999999999999999776
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=245.09 Aligned_cols=287 Identities=20% Similarity=0.349 Sum_probs=239.7
Q ss_pred cceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEE
Q 001184 338 RAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1130)
Q Consensus 338 ~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 417 (1130)
++....+-|.+.|.++... ++ .+.+|+.||.++|||.. |+.+. .+.||.++|.+++|
T Consensus 96 P~pl~~~~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~-Gk~~~-------------------~~~Ght~~ik~v~~ 152 (423)
T KOG0313|consen 96 PKPLQCFLHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLK-GKSIK-------------------TIVGHTGPIKSVAW 152 (423)
T ss_pred CCccccccchhhhhhhccc--Cc-eEEEeecCCeeEEEecC-CceEE-------------------EEecCCcceeeeEE
Confidence 4445556799999999998 44 48999999999999987 55443 57899999998888
Q ss_pred cCCC---CEEEEEeCCCeEEEEEecCCccc-eeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-c-------
Q 001184 418 SPDG---NFIGVAFTKHLIHLYTYQGSNDL-CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-L------- 485 (1130)
Q Consensus 418 spdg---~~las~~~d~~i~vwd~~~~~~~-~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~------- 485 (1130)
--.. ..|++++.|.++++|.++.+... .......||...|.+++..++|. .+++|+.|.++.||+ .
T Consensus 153 v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~~ 230 (423)
T KOG0313|consen 153 VIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDEL 230 (423)
T ss_pred EecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCccccc
Confidence 5433 36999999999999999876542 22223459999999999999999 899999999999999 2
Q ss_pred ------------------CCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEE
Q 001184 486 ------------------SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTM 547 (1130)
Q Consensus 486 ------------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 547 (1130)
++.++.++.||..+|.++.|.+ ...+++++.|.+|+.||+.+++....+... ..+.++
T Consensus 231 E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i 306 (423)
T KOG0313|consen 231 ESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCI 306 (423)
T ss_pred cccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeecC-cceeEe
Confidence 1224667889999999999965 358999999999999999999888876644 458999
Q ss_pred EEecCCCeEEEeeecCCCCcEEEEeeCCCCc---eeEEEecccCceeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCc-e
Q 001184 548 LYSADGSRLFSCGTSKEGDSHLVEWNESEGA---LKRTYIGFRKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDNVN-M 622 (1130)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~-~ 622 (1130)
.++|..++|++++. +..+++||.+++. ..+.+.+|.+ .|.++.|+|... .|++|+.|+++++||+++.. +
T Consensus 307 ~~~~~~~Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~p 381 (423)
T KOG0313|consen 307 SYSPLSKLLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAP 381 (423)
T ss_pred ecccccceeeecCC----CCceeecCCCCCCCceeEEeeecchh-hhhheecCCCCceEEEEEecCCeEEEEEeccCCCc
Confidence 99999999999987 8999999998764 4567888877 899999999876 67789999999999999877 8
Q ss_pred eEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 623 LTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 623 ~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
+..+..|.. .|.++.|+. +..+++|+.|++|+|+..
T Consensus 382 lydI~~h~D--Kvl~vdW~~-~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 382 LYDIAGHND--KVLSVDWNE-GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred ceeeccCCc--eEEEEeccC-CceEEeccCcceEEEecc
Confidence 888877654 899999986 668999999999999864
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-27 Score=262.56 Aligned_cols=247 Identities=24% Similarity=0.405 Sum_probs=217.6
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
.+++|.+.|.+++|+|++++|++++.||.|++|++.+++... .+..|...+..+.|+++++ .+++++.|+.|++|
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~ 78 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLW 78 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEE
Confidence 366899999999999999999999999999999999876433 5678999999999999998 79999999999999
Q ss_pred e-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeec
Q 001184 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
| .+++.+..+..|...+.++.|++. +.++++++.|+.+++||+++.+....+..+...+.++.|+|++.++++++.
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~- 155 (289)
T cd00200 79 DLETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ- 155 (289)
T ss_pred EcCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC-
Confidence 9 666788889999999999999765 568888888999999999988877788878888999999999998888764
Q ss_pred CCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcC
Q 001184 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~ 642 (1130)
++.|++||..+++.+..+..+.. .+.++.|+|+++.+++++.|+.|++||+..++.+..+..+.. .+.++.|+|
T Consensus 156 ---~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~ 229 (289)
T cd00200 156 ---DGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN--GVNSVAFSP 229 (289)
T ss_pred ---CCcEEEEEccccccceeEecCcc-ccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC--ceEEEEEcC
Confidence 78999999999988888887654 799999999999999999999999999999888877754443 789999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCC
Q 001184 643 EGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
++.++++++.++.+++|++.++
T Consensus 230 ~~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 230 DGYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CCcEEEEEcCCCcEEEEEcCCc
Confidence 9888888888999999998654
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-27 Score=294.89 Aligned_cols=270 Identities=16% Similarity=0.230 Sum_probs=215.2
Q ss_pred cCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCC----ccc
Q 001184 369 DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGS----NDL 444 (1130)
Q Consensus 369 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~----~~~ 444 (1130)
+|.+++|+..+.+..... ...-+..|.+.|.+++|+|||++||+|+.|+.|+|||+... ...
T Consensus 457 ~gl~~~~~~~~~~~~~~~--------------~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADL--------------KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEee--------------ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 677888888765543210 00124468999999999999999999999999999997542 111
Q ss_pred e-eeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCc
Q 001184 445 C-QSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGK 522 (1130)
Q Consensus 445 ~-~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~ 522 (1130)
. ....+. +...|.+++|++.... +|++++.|++|++|| .+++.+..+.+|.+.|++++|++. ++.+|++|+.|++
T Consensus 523 ~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 112233 4567999999986433 799999999999999 778889999999999999999763 4579999999999
Q ss_pred EEEEEccCCcceeeecCCCccEEEEEEe-cCCCeEEEeeecCCCCcEEEEeeCCCCc-eeEEEecccCceeEEEEEcCCC
Q 001184 523 IKAWLYDNVGSRVDYDAPGLWCTTMLYS-ADGSRLFSCGTSKEGDSHLVEWNESEGA-LKRTYIGFRKKSAGVVQFDTTR 600 (1130)
Q Consensus 523 i~vwd~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~ 600 (1130)
|++||+++......+..+ ..+.++.|. ++|.++++++. ++.|++||+++++ .+..+.+|.. .|.++.|. ++
T Consensus 600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~~-~V~~v~f~-~~ 672 (793)
T PLN00181 600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHSK-TVSYVRFV-DS 672 (793)
T ss_pred EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCCC-CEEEEEEe-CC
Confidence 999999988777766644 568899995 57899999886 8999999998765 4667777665 78999997 67
Q ss_pred CEEEEEeCCCcEEEEeCCCC------ceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 601 NRILAAGEDNQIKFWDMDNV------NMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 601 ~~l~~~~~dg~i~vwd~~~~------~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
.++++++.|+.|++||+..+ ..+..+..|. ..+.+++|+|++.+|++|+.|+.|++|+....
T Consensus 673 ~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~--~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 673 STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT--NVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCC--CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 89999999999999999743 4566666554 36889999999999999999999999997544
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-29 Score=252.91 Aligned_cols=291 Identities=16% Similarity=0.244 Sum_probs=249.7
Q ss_pred cccceeeecc-CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEE
Q 001184 336 LPRAVACTMH-QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSR 414 (1130)
Q Consensus 336 ~~~~~~~~~~-h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 414 (1130)
.|......++ |..+|..+.|-++..+ |++|+.|..|++|++..++.... .++.|..+.|+.
T Consensus 163 lpS~~~~~ld~h~gev~~v~~l~~sdt-latgg~Dr~Ik~W~v~~~k~~~~-----------------~tLaGs~g~it~ 224 (459)
T KOG0288|consen 163 LPSRALFVLDAHEGEVHDVEFLRNSDT-LATGGSDRIIKLWNVLGEKSELI-----------------STLAGSLGNITS 224 (459)
T ss_pred cchhhhhhhhccccccceeEEccCcch-hhhcchhhhhhhhhcccchhhhh-----------------hhhhccCCCcce
Confidence 3455555665 9999999999999664 99999999999999987763211 157788899999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEe
Q 001184 415 VAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQF 493 (1130)
Q Consensus 415 v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~ 493 (1130)
+.|.++++++++++.|+.+++|++...+... ++.||++.|+++.|..... .+++|+.|.+|++|| .++.|.+++
T Consensus 225 ~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~kt~ 299 (459)
T KOG0288|consen 225 IDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSKTV 299 (459)
T ss_pred eeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheeccc
Confidence 9999999999999999999999999876554 7899999999999998776 599999999999999 777777766
Q ss_pred cCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEee
Q 001184 494 EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWN 573 (1130)
Q Consensus 494 ~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1130)
. ....+..++.. ...+++|..|++|++||.+..........++ .|+++..+++|..+.+++. +..+.+.|
T Consensus 300 l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~viD 369 (459)
T KOG0288|consen 300 L-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLKVID 369 (459)
T ss_pred c-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCceeeee
Confidence 4 33445555543 2568899999999999999999988888776 7999999999999999976 88999999
Q ss_pred CCCCceeEEEeccc---CceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEE
Q 001184 574 ESEGALKRTYIGFR---KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVT 650 (1130)
Q Consensus 574 ~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~ 650 (1130)
+++......+.... ....+.+.|+|++.|+++|+.||.|+||++.++++...+........|++++|+|.|..|+++
T Consensus 370 lRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsa 449 (459)
T KOG0288|consen 370 LRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSA 449 (459)
T ss_pred cccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcc
Confidence 99999888876432 224777999999999999999999999999999999999887766679999999999999999
Q ss_pred eCCCcEEEE
Q 001184 651 TADQGIKIL 659 (1130)
Q Consensus 651 ~~dg~i~iw 659 (1130)
+.++.+.+|
T Consensus 450 dk~~~v~lW 458 (459)
T KOG0288|consen 450 DKQKAVTLW 458 (459)
T ss_pred cCCcceEec
Confidence 999999999
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=236.39 Aligned_cols=363 Identities=18% Similarity=0.288 Sum_probs=263.1
Q ss_pred CChHHHHHHHHHHHHHHHhhccCCCCCCC-------c--ccccccccCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCC
Q 001184 166 LKTSRLRTLINQSLNWQHQLCKNPRPNPD-------I--KTLFVDHSCSPPNGARAPTPVTLPVAAVAKPATYAPLGAHA 236 (1130)
Q Consensus 166 ~p~~rL~~ll~qa~~~q~~~~~~~~~~~~-------~--~sl~~~h~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 236 (1130)
.|++||+.|+.-.++.-...-++-..... . ..|-.|-.-+. ..|.|. .-+.--|+.|+
T Consensus 46 ~PserLl~lv~~gmq~~~d~~~~~~~~S~~~~t~p~~~giDle~dadaq~----~s~e~~---------~yEt~ylt~HK 112 (430)
T KOG0640|consen 46 APSERLLHLVAKGMQAENDGDLRAVSSSVLLITTPVTAGIDLEFDADAQG----SSPEPS---------EYETKYLTSHK 112 (430)
T ss_pred CCHHHHHHHHHHHhhcccCcceecccccccceeccCcCceeeeecccccc----CCCCCc---------ccceEEEeecc
Confidence 89999999998887765554332211000 0 01111111111 012222 12333488888
Q ss_pred CCCCCCccccCchhhhhccccCCCCCcccccccccCCCCCCCCccccccCCCCCCCCCccccCCCCChHHHHHhhcccCC
Q 001184 237 VPFPPAVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDYPSSDHEQLKKRLRASQS 316 (1130)
Q Consensus 237 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (1130)
.+++-. .| +.+|.+.|+++.+.+. .|++ .+..+.+-.+.+
T Consensus 113 ~~cR~a--------------af-----s~DG~lvATGsaD~SI--Kild------------------vermlaks~~~e- 152 (430)
T KOG0640|consen 113 SPCRAA--------------AF-----SPDGSLVATGSADASI--KILD------------------VERMLAKSKPKE- 152 (430)
T ss_pred cceeee--------------ee-----CCCCcEEEccCCcceE--EEee------------------hhhhhhhcchhh-
Confidence 765433 33 6689999999998888 3443 333333222211
Q ss_pred cccccccCCCCCcccccCCcccceeeec-cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccc
Q 001184 317 VDEATYPVPSQQATWSLDDLPRAVACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSN 395 (1130)
Q Consensus 317 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 395 (1130)
+ .... .+....+++++ .|.++|+++.|+|... +|++|+.|++|+++|+......+ .||++
T Consensus 153 ---m--------~~~~-~qa~hPvIRTlYDH~devn~l~FHPre~-ILiS~srD~tvKlFDfsK~saKr--A~K~~---- 213 (430)
T KOG0640|consen 153 ---M--------ISGD-TQARHPVIRTLYDHVDEVNDLDFHPRET-ILISGSRDNTVKLFDFSKTSAKR--AFKVF---- 213 (430)
T ss_pred ---h--------ccCC-cccCCceEeehhhccCcccceeecchhh-eEEeccCCCeEEEEecccHHHHH--HHHHh----
Confidence 0 0000 01123477776 5999999999999997 89999999999999997654332 33321
Q ss_pred cccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEc
Q 001184 396 CSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG 475 (1130)
Q Consensus 396 ~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s 475 (1130)
.....|.++.|+|.|.+|++|..-.++++||+.+-+|......-.+|++.|+++.+++.|+ +.++++
T Consensus 214 -----------qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~--lYvTaS 280 (430)
T KOG0640|consen 214 -----------QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGS--LYVTAS 280 (430)
T ss_pred -----------hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCcc--EEEEec
Confidence 2345899999999999999999999999999999888765555678999999999999999 899999
Q ss_pred CCCcEEEEe-cCCCeeeEec-CCCc-CEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCc-----cEEEE
Q 001184 476 DDKLIRVWD-LSGRKLFQFE-GHEA-PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL-----WCTTM 547 (1130)
Q Consensus 476 ~d~~v~iwd-~~~~~~~~~~-~h~~-~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-----~v~~~ 547 (1130)
.||.|+||| .+++|+.++. .|.+ .|.+..| ..+++++++.+.|..+++|.+.++..+..+.+.+. --+..
T Consensus 281 kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~F--tkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqA 358 (430)
T KOG0640|consen 281 KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVF--TKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQA 358 (430)
T ss_pred cCCcEEeeccccHHHHHHHHhhcCCceeeeEEE--ccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhh
Confidence 999999999 9999999886 4654 5777777 56779999999999999999999999988776532 12345
Q ss_pred EEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001184 548 LYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMD 618 (1130)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 618 (1130)
.|+-...+++.-- ...+.++-||.+++..+..+...+.+.+..+.-+|.+.-+++++.|..+++|--+
T Consensus 359 vFNhtEdyVl~pD---Eas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 359 VFNHTEDYVLFPD---EASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred hhcCccceEEccc---cccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 5676677776643 2367899999999888877766666699999999999999999999999999643
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-28 Score=275.90 Aligned_cols=305 Identities=18% Similarity=0.272 Sum_probs=247.1
Q ss_pred CCCCEEEEEEecCCCeEEEEEe--CcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGC--GDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 423 (1130)
++..|.+++.+|||.. +|+|+ .||.++||+.+.=-. ..+.++.. .+...-.+..|.+.|+|+.|||||++
T Consensus 12 ~~~~IfSIdv~pdg~~-~aTgGq~~d~~~~iW~~~~vl~----~~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVK-FATGGQVLDGGIVIWSQDPVLD----EKEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCcee-EecCCccccccceeeccccccc----hhhhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence 5568999999999985 99999 899999999753110 00011111 22333357799999999999999999
Q ss_pred EEEEeCCCeEEEEEecC---C------------ccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCC
Q 001184 424 IGVAFTKHLIHLYTYQG---S------------NDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG 487 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~---~------------~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~ 487 (1130)
||+|++|+.|.||+... + +..+....+.+|...|.+++|+|++. ++++++.|++|.||| .+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999873 0 11234457889999999999999999 899999999999999 888
Q ss_pred CeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCC------CccEEEEEEecCCCeEEEeee
Q 001184 488 RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP------GLWCTTMLYSADGSRLFSCGT 561 (1130)
Q Consensus 488 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~ 561 (1130)
+.+..+.+|.+.|..+.|.| -|+++++-+.|++|++|++...+....+..+ ...+..+.|+|||.+|++...
T Consensus 162 ~~~~vl~~H~s~VKGvs~DP--~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSWDP--IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeeeecccccccceEECC--ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 99999999999999999965 5589999999999999997765444443332 225788999999999999876
Q ss_pred cCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCC-----CC------------EEEEEeCCCcEEEEeCCCCceeE
Q 001184 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTT-----RN------------RILAAGEDNQIKFWDMDNVNMLT 624 (1130)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~------------~l~~~~~dg~i~vwd~~~~~~~~ 624 (1130)
-..+...+.|.+..+.+.-..+.||+. ++.++.|+|. .+ .+++|+.|++|-||.....+++.
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 566678899999888888899999888 8999999883 11 56779999999999998777765
Q ss_pred EEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 625 STEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 625 ~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
....-.. ..|..++|+|||..|++++.||+|.++.++..
T Consensus 319 vi~~lf~-~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 319 VIHNLFN-KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhhc-CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 5443322 27999999999999999999999999998654
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=225.26 Aligned_cols=274 Identities=15% Similarity=0.209 Sum_probs=235.8
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC-CCCE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNF 423 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~ 423 (1130)
+|...|.+|+|+-+|.+ |++|+.|+++.+|+++.++.... ....+|.+.|-.++|+| ....
T Consensus 18 ~~~~~v~Sv~wn~~g~~-lasgs~dktv~v~n~e~~r~~~~-----------------~~~~gh~~svdql~w~~~~~d~ 79 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTK-LASGSFDKTVSVWNLERDRFRKE-----------------LVYRGHTDSVDQLCWDPKHPDL 79 (313)
T ss_pred hhhhcceEEEEcccCce-eeecccCCceEEEEecchhhhhh-----------------hcccCCCcchhhheeCCCCCcc
Confidence 58899999999999996 99999999999999998755432 14679999999999998 5679
Q ss_pred EEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEE
Q 001184 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYS 502 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~ 502 (1130)
+|+++.|.+|++||+..+++.... . ..+.=..+.|+|+|+ +++.++.|..|.+.| .+.+.+... .....+..
T Consensus 80 ~atas~dk~ir~wd~r~~k~~~~i---~-~~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~-~~~~e~ne 152 (313)
T KOG1407|consen 80 FATASGDKTIRIWDIRSGKCTARI---E-TKGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEE-QFKFEVNE 152 (313)
T ss_pred eEEecCCceEEEEEeccCcEEEEe---e-ccCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehh-cccceeee
Confidence 999999999999999999887643 2 233345689999999 799999999999999 555554444 35667888
Q ss_pred EeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEE
Q 001184 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582 (1130)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1130)
++|+.+ +++++.....|+|.|-.+...+....+..|...+.|+.|+|+|+++|+|+. |..+.+||+..--+++.
T Consensus 153 ~~w~~~--nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELiC~R~ 226 (313)
T KOG1407|consen 153 ISWNNS--NDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELICERC 226 (313)
T ss_pred eeecCC--CCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhhhhee
Confidence 888743 356666777899999999999999999999999999999999999999987 89999999999999999
Q ss_pred EecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCC
Q 001184 583 YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD 653 (1130)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~d 653 (1130)
+..+.- +|+.+.|+.+|++|++|++|..|-|=++++|..+..++..+ +...++|+|...+||.+++|
T Consensus 227 isRldw-pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~---~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 227 ISRLDW-PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEG---PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eccccC-ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccC---CceeEEecCCCceeeEEecC
Confidence 987554 89999999999999999999999999999999999988665 57999999999999988765
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-27 Score=224.90 Aligned_cols=286 Identities=12% Similarity=0.127 Sum_probs=237.1
Q ss_pred eccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCC
Q 001184 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1130)
Q Consensus 343 ~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 422 (1130)
..+|+.+++.+.|..+|. ||++++.|.++.||=..+|+.+. ++.||.++|.|+..+-+.+
T Consensus 6 l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlG-------------------ty~GHtGavW~~Did~~s~ 65 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLG-------------------TYDGHTGAVWCCDIDWDSK 65 (327)
T ss_pred cccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceee-------------------eecCCCceEEEEEecCCcc
Confidence 457999999999999998 79999999999999999999887 5889999999999999999
Q ss_pred EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEc-----CCCcEEEEe-c-------CCCe
Q 001184 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG-----DDKLIRVWD-L-------SGRK 489 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s-----~d~~v~iwd-~-------~~~~ 489 (1130)
++++|+.|.++++||+++|+++.. + .-..+|..+.|+++|.. ++.+. .-+.|.++| . ...+
T Consensus 66 ~liTGSAD~t~kLWDv~tGk~la~---~-k~~~~Vk~~~F~~~gn~--~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep 139 (327)
T KOG0643|consen 66 HLITGSADQTAKLWDVETGKQLAT---W-KTNSPVKRVDFSFGGNL--ILASTDKQMGYTCFVSVFDIRDDSSDIDSEEP 139 (327)
T ss_pred eeeeccccceeEEEEcCCCcEEEE---e-ecCCeeEEEeeccCCcE--EEEEehhhcCcceEEEEEEccCChhhhcccCc
Confidence 999999999999999999997763 3 24668999999999993 44332 346789998 3 3455
Q ss_pred eeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCccee-eecCCCccEEEEEEecCCCeEEEeeecCCCCcE
Q 001184 490 LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV-DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSH 568 (1130)
Q Consensus 490 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1130)
...+..+...++.+.|.+.. +.|++|..||.|.+||++++.... .-..|...|+.+.+++|..++++++. |.+
T Consensus 140 ~~kI~t~~skit~a~Wg~l~--~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----Dtt 213 (327)
T KOG0643|consen 140 YLKIPTPDSKITSALWGPLG--ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----DTT 213 (327)
T ss_pred eEEecCCccceeeeeecccC--CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----Ccc
Confidence 77888888999999997655 799999999999999999976655 44678889999999999999999987 888
Q ss_pred EEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCc--EEEEeCCCC------------ceeEEEeccCCCCC
Q 001184 569 LVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQ--IKFWDMDNV------------NMLTSTEAEGGLPS 634 (1130)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--i~vwd~~~~------------~~~~~~~~~~~~~~ 634 (1130)
-.+||..+-.+++++.. ..++++.+++|-..+++.|+.... |.-=+.+.| +.+..+++ |.++
T Consensus 214 akl~D~~tl~v~Kty~t--e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkG--HFGP 289 (327)
T KOG0643|consen 214 AKLVDVRTLEVLKTYTT--ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKG--HFGP 289 (327)
T ss_pred ceeeeccceeeEEEeee--cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccc--cccC
Confidence 99999999999999985 448999999999888888764322 222222223 23444444 4559
Q ss_pred cceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 635 LPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 635 i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
|++++|+|+|+..++|+.||.|++...+..
T Consensus 290 INsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 290 INSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred cceeEECCCCcccccCCCCceEEEEEeccc
Confidence 999999999999999999999999876543
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=236.06 Aligned_cols=285 Identities=20% Similarity=0.339 Sum_probs=239.7
Q ss_pred cCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCCCcCEEEEeecccC-CccEEEEEecCCcEEEEEccC
Q 001184 452 AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKE-NIHFIFSTAVDGKIKAWLYDN 530 (1130)
Q Consensus 452 ~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~s~dg~i~vwd~~~ 530 (1130)
-|.+.|.++... ++ .|+||+.||.+++||..|+.+..+.||.++|.++++.... ....+++++.|.++++|.++.
T Consensus 103 ~hdDWVSsv~~~--~~--~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SK--WILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred cchhhhhhhccc--Cc--eEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 488899999888 55 7999999999999999999999999999999988876433 335799999999999999887
Q ss_pred Cccee----eecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC-------------------------CCceeE
Q 001184 531 VGSRV----DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES-------------------------EGALKR 581 (1130)
Q Consensus 531 ~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-------------------------~~~~~~ 581 (1130)
+.... ...+|...|.++...++|.++++++. |..|.+|+.. ++.++-
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~----D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSW----DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCCCCeEEeecc----cceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence 66543 33488889999999999999999998 8999999922 123455
Q ss_pred EEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 582 TYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 582 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
++.||.+ .|..+.|++ ...+++++.|.+|+.||+.++..+..+.... .++++.++|...+|++|+.|..+++||.
T Consensus 255 tl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i~~~~~~~Ll~~gssdr~irl~DP 329 (423)
T KOG0313|consen 255 TLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCISYSPLSKLLASGSSDRHIRLWDP 329 (423)
T ss_pred Eeccccc-ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---ceeEeecccccceeeecCCCCceeecCC
Confidence 6788777 899999987 6789999999999999999999988876543 6899999999999999999999999996
Q ss_pred CCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCc
Q 001184 662 ADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKT 741 (1130)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 741 (1130)
+++. +
T Consensus 330 R~~~-------------------------------------------------------------------------g-- 334 (423)
T KOG0313|consen 330 RTGD-------------------------------------------------------------------------G-- 334 (423)
T ss_pred CCCC-------------------------------------------------------------------------C--
Confidence 5540 0
Q ss_pred cceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCC
Q 001184 742 KPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNG 821 (1130)
Q Consensus 742 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~ 821 (1130)
.
T Consensus 335 ------------------------------------------------s------------------------------- 335 (423)
T KOG0313|consen 335 ------------------------------------------------S------------------------------- 335 (423)
T ss_pred ------------------------------------------------c-------------------------------
Confidence 0
Q ss_pred cceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEE
Q 001184 822 LLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQI 901 (1130)
Q Consensus 822 ~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~i 901 (1130)
-...++.+|...|.++.|+|.+..+|++|+.|+++++
T Consensus 336 -------------------------------------------~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~kl 372 (423)
T KOG0313|consen 336 -------------------------------------------VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKL 372 (423)
T ss_pred -------------------------------------------eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEE
Confidence 0112344577777888888877789999999999999
Q ss_pred EEeecCe-EEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECC
Q 001184 902 YNVRVDE-VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTD 947 (1130)
Q Consensus 902 wd~~~~~-~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~ 947 (1130)
||+++.+ ++..+.+|.+.|.++.|+ ++..+++||.|.+|+++.-.
T Consensus 373 WDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 373 WDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 9999877 899999999999999998 56799999999999998654
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-27 Score=258.88 Aligned_cols=295 Identities=18% Similarity=0.202 Sum_probs=215.7
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccce----eeeccccccceeeeeecCCCccEEEEEEcC-
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFK----IWDMSNCSMMLQAAIVKDSSISVSRVAWSP- 419 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp- 419 (1130)
.|.+.|+++.||+||+| ||+|+.||.|+||.+...+......-. ...+...+ .+..+.-++
T Consensus 265 ah~gaIw~mKFS~DGKy-LAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s-------------~~~p~~s~~~ 330 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKY-LASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANS-------------QIEPSTSSEE 330 (712)
T ss_pred ccCCcEEEEEeCCCCce-eeecCCCceEEEEEEeccchhcccccccchhhhhhhhcc-------------ccCccccccc
Confidence 49999999999999995 999999999999999764432110000 00000000 011111111
Q ss_pred --CCC--EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEec
Q 001184 420 --DGN--FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFE 494 (1130)
Q Consensus 420 --dg~--~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~ 494 (1130)
.++ ..-.+.....+.+-+..-.-.-++...+.||.+.|.+++||.++ +|++++.|++||+|+ ....|++.|.
T Consensus 331 ~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL~~F~ 407 (712)
T KOG0283|consen 331 KISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECLKVFS 407 (712)
T ss_pred cccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCcceeeEEe
Confidence 011 11112222222221111111123344689999999999999876 699999999999999 8888999997
Q ss_pred CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeC
Q 001184 495 GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE 574 (1130)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1130)
|...|+|++|+|.+| +++++|+.||.||||++...+...-.. -..-|++++|.|||++.++|+. +|..++|+.
T Consensus 408 -HndfVTcVaFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~----~G~C~fY~t 480 (712)
T KOG0283|consen 408 -HNDFVTCVAFNPVDD-RYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTF----NGYCRFYDT 480 (712)
T ss_pred -cCCeeEEEEecccCC-CcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEe----ccEEEEEEc
Confidence 999999999999766 899999999999999997655444333 3367999999999999999998 999999999
Q ss_pred CCCceeEEEecc-------cCceeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCE
Q 001184 575 SEGALKRTYIGF-------RKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNL 646 (1130)
Q Consensus 575 ~~~~~~~~~~~~-------~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~ 646 (1130)
...+....+.-+ ....|+.+.|.|.. ..+++.+.|..|||+|.+...++..+++......-....|+.||++
T Consensus 481 ~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~ 560 (712)
T KOG0283|consen 481 EGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKH 560 (712)
T ss_pred cCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCE
Confidence 887776544321 12268889888754 3688899999999999999888888887665555567899999999
Q ss_pred EEEEeCCCcEEEEEcCC
Q 001184 647 LVVTTADQGIKILANAD 663 (1130)
Q Consensus 647 l~~~~~dg~i~iw~~~~ 663 (1130)
|+++++|..|++|+...
T Consensus 561 IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 561 IVSASEDSWVYIWKNDS 577 (712)
T ss_pred EEEeecCceEEEEeCCC
Confidence 99999999999999744
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-28 Score=226.74 Aligned_cols=290 Identities=18% Similarity=0.286 Sum_probs=247.1
Q ss_pred eeeecCCCccEEEEEEec---CCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCC
Q 001184 534 RVDYDAPGLWCTTMLYSA---DGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDN 610 (1130)
Q Consensus 534 ~~~~~~~~~~v~~~~~s~---~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 610 (1130)
.....+|..+|..++|+| +|-+|++++. |+.-.+-+-.+|.-+.+|.+|.+ .|...++..+..+.++++.|-
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~k----d~~pmlr~g~tgdwigtfeghkg-avw~~~l~~na~~aasaaadf 81 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASK----DGKPMLRNGDTGDWIGTFEGHKG-AVWSATLNKNATRAASAAADF 81 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEecc----CCCchhccCCCCCcEEeeeccCc-ceeeeecCchhhhhhhhcccc
Confidence 345567888999999985 8888888876 77777788889999999999877 788888888888889999999
Q ss_pred cEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhccccccccccccccccccc
Q 001184 611 QIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGS 690 (1130)
Q Consensus 611 ~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1130)
+-++||.-+|..+..+.. .+ -|.+++|+.|.++|++|+.+..+||||++........+
T Consensus 82 takvw~a~tgdelhsf~h-kh--ivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~------------------- 139 (334)
T KOG0278|consen 82 TAKVWDAVTGDELHSFEH-KH--IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEI------------------- 139 (334)
T ss_pred hhhhhhhhhhhhhhhhhh-hh--eeeeEEecccchhhhccchHHHhhhhhccCCCCCchhh-------------------
Confidence 999999999999888864 33 68999999999999999999999999987653322222
Q ss_pred ceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccce
Q 001184 691 AVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKV 770 (1130)
Q Consensus 691 ~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i 770 (1130)
.+|.+.|
T Consensus 140 -------------------------------------------------------------------------~ghtg~I 146 (334)
T KOG0278|consen 140 -------------------------------------------------------------------------SGHTGGI 146 (334)
T ss_pred -------------------------------------------------------------------------cCCCCcc
Confidence 2377888
Q ss_pred EEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEE
Q 001184 771 ARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMS 850 (1130)
Q Consensus 771 ~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~ 850 (1130)
..+.|....+.+++...|++|++||..+ |..+... ....+|+++.+++||++|.+
T Consensus 147 r~v~wc~eD~~iLSSadd~tVRLWD~rT----------------------gt~v~sL---~~~s~VtSlEvs~dG~ilTi 201 (334)
T KOG0278|consen 147 RTVLWCHEDKCILSSADDKTVRLWDHRT----------------------GTEVQSL---EFNSPVTSLEVSQDGRILTI 201 (334)
T ss_pred eeEEEeccCceEEeeccCCceEEEEecc----------------------CcEEEEE---ecCCCCcceeeccCCCEEEE
Confidence 8899999999999999999999987543 3322211 24678999999999999999
Q ss_pred EeCCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEE-ecCCCCeeEEEEccCC
Q 001184 851 AGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKL-KGHQKHITGLAFSTNL 929 (1130)
Q Consensus 851 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~~~V~~l~~s~dg 929 (1130)
+..+.|.+||..+...++.++. ...|.+...+| +..+++.|++|..++.||..+++.+..+ ++|.++|.|+.|+|||
T Consensus 202 a~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdG 279 (334)
T KOG0278|consen 202 AYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDG 279 (334)
T ss_pred ecCceeEEeccccccceeeccC-ccccccccccC-CCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCC
Confidence 9999999999999999998875 45699999999 7789999999999999999999999886 9999999999999999
Q ss_pred CeEEEEeCCCcEEEEECCCCc
Q 001184 930 NILVSSGSDAQLIFWNTDTWE 950 (1130)
Q Consensus 930 ~~L~s~s~Dg~i~vwd~~~~~ 950 (1130)
...++|+.||+|++|....++
T Consensus 280 E~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 280 ELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ceeeccCCCceEEEEEecCCC
Confidence 999999999999999987654
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=224.63 Aligned_cols=273 Identities=18% Similarity=0.269 Sum_probs=221.9
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCC-CceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGL-RERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
-.+.|.+++|||....+++.||-||+||+|+++. |.... +....|.++|.+++|+.||..+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskV 87 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKV 87 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceE
Confidence 3579999999996666888999999999999987 34332 1356899999999999999999
Q ss_pred EEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEE
Q 001184 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1130)
++|+.|+.+++||+.+++.. .+..|.++|..+.|-+...+..|+|||.|++|++|| ....++.++. -..++.++
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 99999999999999998543 467899999999999876655899999999999999 7777777776 45677777
Q ss_pred eecccCCccEEEEEecCCcEEEEEccCCcceeeecC--CCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCC--ce
Q 001184 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA--PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG--AL 579 (1130)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~ 579 (1130)
..- ..+++.+..++.|.+|++++......... -...+++++..+|....+.|+. +|.+.+..+..+ +.
T Consensus 163 Dv~----~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 163 DVL----YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKD 234 (347)
T ss_pred hcc----CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccC
Confidence 542 25788999999999999987655543221 2336889999999888888887 888888877665 44
Q ss_pred eEEEecccC--------ceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEe
Q 001184 580 KRTYIGFRK--------KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT 651 (1130)
Q Consensus 580 ~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~ 651 (1130)
-.+|+.|+. -.|+.++|+|.-..|+++|.||++.+||-+....+...+.+.. +|+++.|+.+|.++|-+.
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q--pItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ--PITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCC--ccceeEecCCCCEEEEEe
Confidence 556777663 1466799999999999999999999999988877777665544 899999999999988663
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=262.76 Aligned_cols=278 Identities=18% Similarity=0.296 Sum_probs=245.2
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
.+...+.+..|. ++ .+++|+.|.+|++||..++..+.. -+.||.+.|.++++..-+.+|
T Consensus 206 ~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~l 264 (537)
T KOG0274|consen 206 TDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKL 264 (537)
T ss_pred cCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEE
Confidence 467899999999 44 389999999999999999988762 278999999999999888899
Q ss_pred EEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEE
Q 001184 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1130)
++|+.|.++++||+.+|+|.. .+.+|...|.++...+. .+++|+.|.+|++|+ .++.++..+.+|.++|.++
T Consensus 265 vsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v 337 (537)
T KOG0274|consen 265 VSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV 337 (537)
T ss_pred EEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence 999999999999999999876 78899999999988653 689999999999999 7799999999999999999
Q ss_pred eecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCC-ceeEE
Q 001184 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG-ALKRT 582 (1130)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~ 582 (1130)
..+ +.++++|+.|++|++||+.+.+....+.+|...|.++.+.+. ..+++++. |+.|++||+.+. +++.+
T Consensus 338 ~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 338 QLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTKRKCIHT 408 (537)
T ss_pred Eec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCchhhhhhh
Confidence 874 479999999999999999999999999999999999988776 88999987 899999999999 99999
Q ss_pred EecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001184 583 YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANA 662 (1130)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~ 662 (1130)
+.+|.. .+..+. ..++++++++.|++|++||..+++++..+... +...|..+++. ...+++++.||.+.+||+.
T Consensus 409 l~~h~~-~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 409 LQGHTS-LVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLR 482 (537)
T ss_pred hcCCcc-cccccc--cccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEecc
Confidence 998766 454443 35789999999999999999999999999875 33467777765 4678999999999999999
Q ss_pred CCc
Q 001184 663 DGL 665 (1130)
Q Consensus 663 ~~~ 665 (1130)
++.
T Consensus 483 ~~~ 485 (537)
T KOG0274|consen 483 SGT 485 (537)
T ss_pred cCc
Confidence 984
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-26 Score=257.00 Aligned_cols=287 Identities=13% Similarity=0.101 Sum_probs=222.6
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC-CCCEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNFI 424 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l 424 (1130)
|-..|....+++|+.. +++++.+..+..|+...+..+. +.............+.+|.+.|.+++|+| |+++|
T Consensus 19 ~~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L 91 (493)
T PTZ00421 19 HFLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL 91 (493)
T ss_pred ceeccccccccCCCCC-cEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence 4456777788888764 6777888888899887654331 11111111111235789999999999999 89999
Q ss_pred EEEeCCCeEEEEEecCCcc----ceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcC
Q 001184 425 GVAFTKHLIHLYTYQGSND----LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAP 499 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~----~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~ 499 (1130)
|+|+.|++|++||+.++.. ......+.+|...|.+++|+|++.. +|++++.|++|+||| .+++.+..+.+|...
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 9999999999999976532 1233468899999999999998644 799999999999999 788888999999999
Q ss_pred EEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCcc-EEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc
Q 001184 500 VYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLW-CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1130)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1130)
|.+++|++ ++.+|++++.|++|++||++++.....+..|... +..+.|.+++..+++++.+...++.|++||+++..
T Consensus 171 V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 171 ITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred eEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 99999976 5689999999999999999998887777777653 45678999988998887655568999999998754
Q ss_pred -eeEEEecccCceeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCC
Q 001184 579 -LKRTYIGFRKKSAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1130)
Q Consensus 579 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~ 643 (1130)
.......+....+....|+++++++++++ .|+.|++||+.+++.+...... ...++..++|.|.
T Consensus 249 ~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~-s~~~~~g~~~~pk 314 (493)
T PTZ00421 249 SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS-SVEPHKGLCMMPK 314 (493)
T ss_pred CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc-CCCCCcceEeccc
Confidence 33333333333566678999999999887 5999999999999887765543 2336788888884
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=263.01 Aligned_cols=304 Identities=18% Similarity=0.267 Sum_probs=244.8
Q ss_pred CccceEEEEEeccCCeEEEee--eCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEec
Q 001184 766 SASKVARLLYTNSGIGILALW--SNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSK 843 (1130)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~ 843 (1130)
+...|.++..+|+|..++++| .|+.+++|+...-... ...++..-...+. ....|.+.|.|+.|++
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~----------~~~~~~~l~k~l~--~m~~h~~sv~CVR~S~ 79 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDE----------KEEKNENLPKHLC--TMDDHDGSVNCVRFSP 79 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccch----------hhhhhcccchhhe--eeccccCceeEEEECC
Confidence 455689999999999999999 7999999986542110 1112221011111 1126899999999999
Q ss_pred CCCEEEEEe-CCeEEEEECCC------------------ceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEe
Q 001184 844 NDSYVMSAG-GGKVSLFNMMN------------------FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNV 904 (1130)
Q Consensus 844 dg~~la~~~-dg~i~iwd~~~------------------~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~ 904 (1130)
||++||+|+ |+.|.||.... .+++..+.+|...|..++|+| ++.+||+++.|++|.||+.
T Consensus 80 dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~ 158 (942)
T KOG0973|consen 80 DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNA 158 (942)
T ss_pred CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEcc
Confidence 999999999 57799998762 246788899999999999999 8999999999999999999
Q ss_pred ecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-
Q 001184 905 RVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN- 983 (1130)
Q Consensus 905 ~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~- 983 (1130)
.+.+.+.++++|.+.|..+.|.|-|++|||-+.|++|+||++..+...+...-..........+..+.|||||.+|++.
T Consensus 159 ~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 159 KTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred ccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence 9999999999999999999999999999999999999999988877666555444444444678899999999999983
Q ss_pred ----cCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECC-----CCC------------EEEEEeCCCcEEEEeCCCcc
Q 001184 984 ----HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSC-----NSQ------------LIYATFTDGSIGVFDADSLR 1042 (1130)
Q Consensus 984 ----~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~-----dg~------------~l~t~~~Dg~i~vwd~~~~~ 1042 (1130)
.-..+.|.+-.+.+.-..+.+| .+++.++.|+| ..+ .+|+|+.|++|.||.....+
T Consensus 239 A~n~~~~~~~IieR~tWk~~~~LvGH---~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R 315 (942)
T KOG0973|consen 239 AVNGGKSTIAIIERGTWKVDKDLVGH---SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR 315 (942)
T ss_pred hccCCcceeEEEecCCceeeeeeecC---CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC
Confidence 2456889988888887888887 67999999998 111 68889999999999987666
Q ss_pred cccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q 001184 1043 LRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1096 (1130)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~ 1096 (1130)
.+..+.. =....+++++|+| ||..|.++|.||+|.+..+++.+
T Consensus 316 Pl~vi~~----------lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 316 PLFVIHN----------LFNKSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred chhhhhh----------hhcCceeeeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence 5544421 1223467899999 58999999999999999998765
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-26 Score=215.93 Aligned_cols=235 Identities=13% Similarity=0.229 Sum_probs=201.8
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
.+.||+.+++.+.++.+|.+|.+|+.|.+..||-...|+.+. ++.||.+.|+++....+.+ .++||+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 578999999999999999999999999999999998888666 7899999999999999999 89999999999999
Q ss_pred e-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEec-----CCcEEEEEcc-------CCcceeeecCCCccEEEEEEe
Q 001184 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV-----DGKIKAWLYD-------NVGSRVDYDAPGLWCTTMLYS 550 (1130)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-----dg~i~vwd~~-------~~~~~~~~~~~~~~v~~~~~s 550 (1130)
| .+|+++..++ ...+|..+.|++.+ ++++...+ .+.|.++|++ ..++...+..+...++.+.|.
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~~g--n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSFGG--NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeeccCC--cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 9 9999999987 67889999997644 55555433 3678999988 344566777788899999999
Q ss_pred cCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccC
Q 001184 551 ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEG 630 (1130)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 630 (1130)
|-+.+|++|.. +|.|..||.++|+....-...+...|+.++++++..++++++.|.+-++||..+.+.++++....
T Consensus 157 ~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~ 232 (327)
T KOG0643|consen 157 PLGETIIAGHE----DGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTER 232 (327)
T ss_pred ccCCEEEEecC----CCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecc
Confidence 99999999976 99999999999865444333344489999999999999999999999999999999999887654
Q ss_pred CCCCcceEEEcCCCCEEEEEeCC
Q 001184 631 GLPSLPRLRFNKEGNLLVVTTAD 653 (1130)
Q Consensus 631 ~~~~i~~v~~s~~~~~l~~~~~d 653 (1130)
++++.+++|....++.|+..
T Consensus 233 ---PvN~aaisP~~d~VilgGGq 252 (327)
T KOG0643|consen 233 ---PVNTAAISPLLDHVILGGGQ 252 (327)
T ss_pred ---cccceecccccceEEecCCc
Confidence 79999999977777777544
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=224.49 Aligned_cols=311 Identities=15% Similarity=0.204 Sum_probs=241.4
Q ss_pred CcccceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccc----cccceeeeeecCCCc
Q 001184 335 DLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSN----CSMMLQAAIVKDSSI 410 (1130)
Q Consensus 335 ~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~h~~ 410 (1130)
....+-.....|+..+.+.+|||||. ++|+|+.|.+|+|.|++.--... +.-++.. ...++.. ++-.|..
T Consensus 100 ~~~yEt~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks----~~~em~~~~~qa~hPvIR-TlYDH~d 173 (430)
T KOG0640|consen 100 PSEYETKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKS----KPKEMISGDTQARHPVIR-TLYDHVD 173 (430)
T ss_pred CcccceEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhc----chhhhccCCcccCCceEe-ehhhccC
Confidence 33445555567999999999999998 79999999999999997211000 0001111 1122222 4778999
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCe
Q 001184 411 SVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRK 489 (1130)
Q Consensus 411 ~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~ 489 (1130)
.|+++.|+|....|++|+.|++|+++|.......+..+.+ ....+|.++.|.|.|. +++.|....++++|| .+-++
T Consensus 174 evn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~Qc 250 (430)
T KOG0640|consen 174 EVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQC 250 (430)
T ss_pred cccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeE
Confidence 9999999999999999999999999999764433322222 3456899999999999 899999999999999 66665
Q ss_pred eeEe---cCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecC-C-CccEEEEEEecCCCeEEEeeecCC
Q 001184 490 LFQF---EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA-P-GLWCTTMLYSADGSRLFSCGTSKE 564 (1130)
Q Consensus 490 ~~~~---~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~-~~~v~~~~~s~~~~~l~~~~~~~~ 564 (1130)
...- .+|++.|+++.++ +.+.+.++++.||.|++||--+.+++.++.. | +..|.+..|..+|+++++.|.
T Consensus 251 fvsanPd~qht~ai~~V~Ys--~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~--- 325 (430)
T KOG0640|consen 251 FVSANPDDQHTGAITQVRYS--STGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK--- 325 (430)
T ss_pred eeecCcccccccceeEEEec--CCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC---
Confidence 5432 4799999999885 4558999999999999999888887775542 3 347999999999999999987
Q ss_pred CCcEEEEeeCCCCceeEEEecccCc----eeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeEEEeccCCCCCcceEE
Q 001184 565 GDSHLVEWNESEGALKRTYIGFRKK----SAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLR 639 (1130)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~ 639 (1130)
|..+++|.+.+++.+..+.|.... --+...|+....+++.-. ..+.+.-||.+++..+..+.. +|.+.+..+.
T Consensus 326 -DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~ 403 (430)
T KOG0640|consen 326 -DSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIV 403 (430)
T ss_pred -cceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEE
Confidence 899999999999999999875211 112245777777777754 357899999999887766554 5566899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEc
Q 001184 640 FNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 640 ~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
.||.+.-+.+++.|...|+|--
T Consensus 404 HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 404 HSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred eCCCCCceeeecccceeeeeee
Confidence 9999999999999999999963
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.3e-27 Score=219.46 Aligned_cols=283 Identities=17% Similarity=0.256 Sum_probs=224.0
Q ss_pred EEEEEecC--CCeEEEEE-----eCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC-CC
Q 001184 351 VSMDFHPF--HHTLLVVG-----CGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD-GN 422 (1130)
Q Consensus 351 ~~v~fspd--g~~llasg-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-g~ 422 (1130)
.++.|||- ++..+|++ ...|.+.|-++..++-+. .+.-+ .-...+..++||++ ..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~--e~~s~---------------d~~D~LfdV~Wse~~e~ 74 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQ--ECQSY---------------DTEDGLFDVAWSENHEN 74 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeE--EEEee---------------ecccceeEeeecCCCcc
Confidence 56788884 44223333 135789999987444332 12212 22457999999996 45
Q ss_pred EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEE
Q 001184 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVY 501 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~ 501 (1130)
.+++++.||++++||+.-. -.+...++.|...|.++.|++-.++ .++++|.|++|++|+ ..++.+.+|.||...|.
T Consensus 75 ~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred eEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 7888899999999995432 3455578899999999999997776 678889999999999 88899999999999999
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCC-eEEEeeecCCCCcEEEEeeCCCC-ce
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGS-RLFSCGTSKEGDSHLVEWNESEG-AL 579 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~~-~~ 579 (1130)
...|+|.. .++++++|.|+++++||++.......+..|...+.++.|+.-.. .+++++. |+.|+.||++.- .+
T Consensus 152 ~a~~sp~~-~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v----d~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 152 QAAFSPHI-PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV----DNLVRGWDIRNLRTP 226 (311)
T ss_pred EEecCCCC-CCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC----CceEEEEehhhcccc
Confidence 99999864 47999999999999999999988888999999999999998555 5556554 999999999874 45
Q ss_pred eEEEecccCceeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC-ceeEEEeccCCCCCcceEEEcC-CCCEEEEEeCCCcE
Q 001184 580 KRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNV-NMLTSTEAEGGLPSLPRLRFNK-EGNLLVVTTADQGI 656 (1130)
Q Consensus 580 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~i~~v~~s~-~~~~l~~~~~dg~i 656 (1130)
+..+.+|.- .|+.+.|+|.. ..|++++.|-+++|||...+ ..+.+...|.. -+..+.|++ ++.++|+.+-|+.+
T Consensus 227 l~eL~gh~~-AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtE--Fv~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 227 LFELNGHGL-AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTE--FVCGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred ceeecCCce-EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccce--EEeccccccccCceeeecccccce
Confidence 677777654 89999999976 47889999999999999844 34444554443 577888887 67899999999999
Q ss_pred EEEEc
Q 001184 657 KILAN 661 (1130)
Q Consensus 657 ~iw~~ 661 (1130)
.||+.
T Consensus 304 ~Vw~p 308 (311)
T KOG0277|consen 304 YVWNP 308 (311)
T ss_pred eeecc
Confidence 99983
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=250.35 Aligned_cols=302 Identities=19% Similarity=0.320 Sum_probs=247.6
Q ss_pred CCCCCCCCccccCCCCChHHHHHhhccc----CCcccccccCCCCCcccccCCcccceeeeccCCCCEEEEEEecCCCeE
Q 001184 287 PRAPSNTLGMIDYPSSDHEQLKKRLRAS----QSVDEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHHTL 362 (1130)
Q Consensus 287 p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~l 362 (1130)
|+.+.......++..+|.+.+...+... ...+.+++.-+..++.|+........+..++ .+.|+++.|+++|+ .
T Consensus 154 ~r~~~r~~~~~p~rvLDaP~l~dDfY~nlldWss~n~laValg~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~-~ 231 (484)
T KOG0305|consen 154 PRKLKRKIPQTPYRVLDAPGLQDDFYLNLLDWSSANVLAVALGQSVYLWSASSGSVTELCSFG-EELVTSVKWSPDGS-H 231 (484)
T ss_pred cccccCcccCChhhhccCCcccccHhhhHhhcccCCeEEEEecceEEEEecCCCceEEeEecC-CCceEEEEECCCCC-E
Confidence 3333334445555555555554444332 2334455555556888888877755665565 89999999999999 5
Q ss_pred EEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecC-CCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCC
Q 001184 363 LVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKD-SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGS 441 (1130)
Q Consensus 363 lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~ 441 (1130)
||+|..+|.|.|||..+.+.+. .+.+ |...|.+++|. +..+.+|+.|+.|..+|+...
T Consensus 232 LavG~~~g~v~iwD~~~~k~~~-------------------~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~ 290 (484)
T KOG0305|consen 232 LAVGTSDGTVQIWDVKEQKKTR-------------------TLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRIS 290 (484)
T ss_pred EEEeecCCeEEEEehhhccccc-------------------cccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecc
Confidence 9999999999999998877765 3455 99999999998 778999999999999999987
Q ss_pred ccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEE--e
Q 001184 442 NDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFST--A 518 (1130)
Q Consensus 442 ~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~--s 518 (1130)
+.... .+.+|...|..+.|++|+. ++++|+.|+.+.||| ....++..+..|.+.|.+++|+|-.. .+||+| +
T Consensus 291 ~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs 365 (484)
T KOG0305|consen 291 QHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQS-GLLATGGGS 365 (484)
T ss_pred hhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCcc-CceEEcCCC
Confidence 76543 4889999999999999999 899999999999999 78888999999999999999998765 588887 4
Q ss_pred cCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcC
Q 001184 519 VDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT 598 (1130)
Q Consensus 519 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1130)
.|++|++||..++..+.... .+..|.++.|++..+.|+++. +..+..|.||+..+.+.+..+.+|.. .|..++++|
T Consensus 366 ~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sth--G~s~n~i~lw~~ps~~~~~~l~gH~~-RVl~la~SP 441 (484)
T KOG0305|consen 366 ADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTH--GYSENQITLWKYPSMKLVAELLGHTS-RVLYLALSP 441 (484)
T ss_pred cccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEec--CCCCCcEEEEeccccceeeeecCCcc-eeEEEEECC
Confidence 69999999999777666554 455799999999998887764 24467999999999999999999887 799999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC
Q 001184 599 TRNRILAAGEDNQIKFWDMDNV 620 (1130)
Q Consensus 599 ~~~~l~~~~~dg~i~vwd~~~~ 620 (1130)
||..+++|+.|.++++|++-..
T Consensus 442 dg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 442 DGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCEEEEecccCcEEeccccCC
Confidence 9999999999999999998765
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-26 Score=235.84 Aligned_cols=295 Identities=18% Similarity=0.279 Sum_probs=226.0
Q ss_pred CccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCC
Q 001184 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1130)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1130)
|...|.++++.|.|.++++|+-|.+|++||+......... ...+.......|.++.||+.|
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~-------------------fr~l~P~E~h~i~sl~ys~Tg 226 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS-------------------FRQLQPCETHQINSLQYSVTG 226 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEecccccccchh-------------------hhccCcccccccceeeecCCC
Confidence 8888999999999999999999999999998753322110 001112356679999999999
Q ss_pred CEEEEEe-CCeEEEEECCCceeEEEE------------eCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCe-EEE
Q 001184 846 SYVMSAG-GGKVSLFNMMNFKVMTTF------------MSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE-VKT 911 (1130)
Q Consensus 846 ~~la~~~-dg~i~iwd~~~~~~~~~~------------~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~-~~~ 911 (1130)
..|++.+ ....+|+|....+..... ++|...++|.+|+|++...+.+++.||+++|||+...+ .+.
T Consensus 227 ~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q 306 (641)
T KOG0772|consen 227 DQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ 306 (641)
T ss_pred CeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee
Confidence 8887776 678999999876655443 46888899999999888899999999999999998543 333
Q ss_pred EEe-----cCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCC-CCeEEEEEcCCCcEEEE-Ec
Q 001184 912 KLK-----GHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLP-VGETRVQFHSDQVRLLV-NH 984 (1130)
Q Consensus 912 ~l~-----~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~~-~~ 984 (1130)
.++ +..-+++.++|++||+++|.|..||.|.+|+..+...... ..+...|.+ ..+++|.||+||++|++ +.
T Consensus 307 Vik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~--~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~ 384 (641)
T KOG0772|consen 307 VIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPV--MKVKDAHLPGQDITSISFSYDGNYLLSRGF 384 (641)
T ss_pred EEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccc--eEeeeccCCCCceeEEEeccccchhhhccC
Confidence 332 3345789999999999999999999999999866443322 233333332 58999999999999999 89
Q ss_pred CCcEEEEECCCcee-eeeeecCCCCCCCeEEEEECCCCCEEEEEeC------CCcEEEEeCCCcccccccCCCcccccCC
Q 001184 985 ETQLAIYDGSKMEC-IRQWVPQDVLSSPISSAAYSCNSQLIYATFT------DGSIGVFDADSLRLRCRIAPSAYMSQAS 1057 (1130)
Q Consensus 985 d~~i~v~d~~~~~~-~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 1057 (1130)
|+++++||++..+. +..+.+. ....+-+.++||||.++|++|.. .|.+++||..+.+.+..+...
T Consensus 385 D~tLKvWDLrq~kkpL~~~tgL-~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~------- 456 (641)
T KOG0772|consen 385 DDTLKVWDLRQFKKPLNVRTGL-PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS------- 456 (641)
T ss_pred CCceeeeeccccccchhhhcCC-CccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC-------
Confidence 99999999997554 3333222 11456788999999999999984 478999999999999888743
Q ss_pred CCCceeeeEEEEEcCCCCCEEEEEeCCCcEEE-EeCCC
Q 001184 1058 PNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKV-IEPSE 1094 (1130)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~v-W~~~~ 1094 (1130)
...++.+.|+|.- +.|.+|+.||+++| ||...
T Consensus 457 ----~aSvv~~~WhpkL-NQi~~gsgdG~~~vyYdp~~ 489 (641)
T KOG0772|consen 457 ----TASVVRCLWHPKL-NQIFAGSGDGTAHVYYDPNE 489 (641)
T ss_pred ----CceEEEEeecchh-hheeeecCCCceEEEECccc
Confidence 3567889999964 45666777888775 55543
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.4e-25 Score=214.51 Aligned_cols=281 Identities=15% Similarity=0.222 Sum_probs=229.0
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
-...|.++.|+++|.. +++++.|.+++|||..+|+..+ ++..++-.|..++|......+.
T Consensus 13 ~~~~i~sl~fs~~G~~-litss~dDsl~LYd~~~g~~~~-------------------ti~skkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLL-LITSSEDDSLRLYDSLSGKQVK-------------------TINSKKYGVDLACFTHHSNTVI 72 (311)
T ss_pred CCCceeEEEecCCCCE-EEEecCCCeEEEEEcCCCceee-------------------EeecccccccEEEEecCCceEE
Confidence 4679999999999995 7778889999999999999876 3455666888899988777777
Q ss_pred EEeC--CCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEE
Q 001184 426 VAFT--KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYS 502 (1130)
Q Consensus 426 s~~~--d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~ 502 (1130)
.++. |.+|+.-++.+.+.++ -+.||...|.+++.+|-+. .+++++.|++|++|| ...++...+.....++.
T Consensus 73 ~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~- 146 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIA- 146 (311)
T ss_pred EccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCcce-
Confidence 7766 8899999999988776 6899999999999999988 899999999999999 65777666655445554
Q ss_pred EeecccCCccEEEEEecCCcEEEEEccCCc--ceeeec---CCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCC
Q 001184 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVG--SRVDYD---APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577 (1130)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1130)
+| ++.|-++|++...+.|++||++... +...+. ......+.+.|+|||++++.+.. .+.+++.|.-+|
T Consensus 147 -Af--Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~G 219 (311)
T KOG1446|consen 147 -AF--DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFDG 219 (311)
T ss_pred -eE--CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccCC
Confidence 44 4666788888877799999998753 222332 23457899999999999999875 889999999999
Q ss_pred ceeEEEecccCce--eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCc
Q 001184 578 ALKRTYIGFRKKS--AGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQG 655 (1130)
Q Consensus 578 ~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~ 655 (1130)
..+.++.++.... -...+|+||++++++|+.||+|.+|+++++..+..+... ...++.++.|+|.-.+++++ +..
T Consensus 220 ~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa--~s~ 296 (311)
T KOG1446|consen 220 TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSA--SSN 296 (311)
T ss_pred cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeec--Cce
Confidence 9999988776532 245789999999999999999999999999999998875 34478999999977666655 457
Q ss_pred EEEEEcC
Q 001184 656 IKILANA 662 (1130)
Q Consensus 656 i~iw~~~ 662 (1130)
+.+|-..
T Consensus 297 l~fw~p~ 303 (311)
T KOG1446|consen 297 LVFWLPD 303 (311)
T ss_pred EEEEecc
Confidence 7788654
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.9e-25 Score=201.40 Aligned_cols=307 Identities=15% Similarity=0.150 Sum_probs=232.2
Q ss_pred CccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCC
Q 001184 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1130)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1130)
....|.+++|.|.|...+++++..++++-.+..-.....+...+...+ .+.......|.+.|.|.+|||+|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp---------~v~~kr~khhkgsiyc~~ws~~g 101 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPP---------SVLCKRNKHHKGSIYCTAWSPCG 101 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCC---------eEEeeeccccCccEEEEEecCcc
Confidence 678899999999999999999999998865432111111111111000 00111123689999999999999
Q ss_pred CEEEEEe-CCeEEEEECCCcee-----EEEEeCCCCCeEEEEEeCC---CCcEEEEEe-CCCcEEEEEeecCeEEEEEec
Q 001184 846 SYVMSAG-GGKVSLFNMMNFKV-----MTTFMSPPPASTFLAFHPQ---DNNIIAIGM-EDSTIQIYNVRVDEVKTKLKG 915 (1130)
Q Consensus 846 ~~la~~~-dg~i~iwd~~~~~~-----~~~~~~~~~~i~~l~~sp~---~~~~lasg~-~dg~v~iwd~~~~~~~~~l~~ 915 (1130)
++|++|+ |.+|++...+...+ -..+.-|.+.|..++|-.+ ++.+|++++ .|..|++-|..+|+....+.+
T Consensus 102 eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sg 181 (350)
T KOG0641|consen 102 ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSG 181 (350)
T ss_pred CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecC
Confidence 9999999 78898876553322 2346678999999999753 467888765 467888889999999999999
Q ss_pred CCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCC-CCCCeEEEEEcCCCcEEEEE-cCCcEEEEEC
Q 001184 916 HQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGK-LPVGETRVQFHSDQVRLLVN-HETQLAIYDG 993 (1130)
Q Consensus 916 h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~ 993 (1130)
|++.|.++- +=+|-++++++.|.+|++||+.-..+..........+. ....|.+++..|.|++|+++ .|....+||+
T Consensus 182 htghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydi 260 (350)
T KOG0641|consen 182 HTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDI 260 (350)
T ss_pred CcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEe
Confidence 999998872 33578999999999999999987655444333332222 33679999999999999997 4888999999
Q ss_pred CCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCC
Q 001184 994 SKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQ 1073 (1130)
Q Consensus 994 ~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1073 (1130)
+.+..++.+.+| ...|.++.|||...||++++.|..|++=|+. |.+...+..- +. -.|...++.+.|+|+
T Consensus 261 rg~r~iq~f~ph---sadir~vrfsp~a~yllt~syd~~ikltdlq-gdla~el~~~--vv----~ehkdk~i~~rwh~~ 330 (350)
T KOG0641|consen 261 RGGRMIQRFHPH---SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ-GDLAHELPIM--VV----AEHKDKAIQCRWHPQ 330 (350)
T ss_pred eCCceeeeeCCC---ccceeEEEeCCCceEEEEecccceEEEeecc-cchhhcCceE--EE----EeccCceEEEEecCc
Confidence 999999999887 7899999999999999999999999999987 4443333211 11 124456788999997
Q ss_pred CCCEEEEEeCCCcEEEEeCC
Q 001184 1074 EPNQLAVGLTDGSVKVIEPS 1093 (1130)
Q Consensus 1074 ~~~~l~s~~~Dg~v~vW~~~ 1093 (1130)
+ .-+++.+.|.++-+|-+.
T Consensus 331 d-~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 331 D-FSFISSSADKTATLWALN 349 (350)
T ss_pred c-ceeeeccCcceEEEeccC
Confidence 4 678899999999999764
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=216.50 Aligned_cols=266 Identities=16% Similarity=0.261 Sum_probs=214.3
Q ss_pred cCCCCCcccccC-CcccceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeecccccccee
Q 001184 323 PVPSQQATWSLD-DLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQ 401 (1130)
Q Consensus 323 s~~~~~~~~~~~-~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1130)
...|++.+-..+ .......+.+.-.+.+..|+||++....+++++.||+++|||+..... +
T Consensus 35 ~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~----P-------------- 96 (311)
T KOG0277|consen 35 AGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK----P-------------- 96 (311)
T ss_pred ccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc----c--------------
Confidence 344555555554 333344555667899999999999887899999999999999532211 1
Q ss_pred eeeecCCCccEEEEEEcC-CCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcE
Q 001184 402 AAIVKDSSISVSRVAWSP-DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480 (1130)
Q Consensus 402 ~~~~~~h~~~V~~v~~sp-dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v 480 (1130)
...++.|...|.++.|++ +++.+++++.|++|++|+...++.+. ++.||...|...+|+|.... +++++|.|+++
T Consensus 97 i~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l 172 (311)
T KOG0277|consen 97 IHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTL 172 (311)
T ss_pred hhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceE
Confidence 125889999999999999 56678888999999999998876555 78999999999999998776 79999999999
Q ss_pred EEEe--cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcc-eeeecCCCccEEEEEEecCC-CeE
Q 001184 481 RVWD--LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS-RVDYDAPGLWCTTMLYSADG-SRL 556 (1130)
Q Consensus 481 ~iwd--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~~~-~~l 556 (1130)
++|| ..|+.+. +..|...+.++.|+.. +..+|+||+.|+.|+.||+++.+. +.++.+|+-.|..++|+|.. ..|
T Consensus 173 ~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky-~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lL 250 (311)
T KOG0277|consen 173 RLWDVRSPGKFMS-IEAHNSEILCCDWSKY-NHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLL 250 (311)
T ss_pred EEEEecCCCceeE-EEeccceeEeeccccc-CCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHh
Confidence 9999 5566665 8889999999999864 447999999999999999988654 55788899999999999965 467
Q ss_pred EEeeecCCCCcEEEEeeCCCCc-eeEEEecccCceeEEEEEcCC-CCEEEEEeCCCcEEEEeC
Q 001184 557 FSCGTSKEGDSHLVEWNESEGA-LKRTYIGFRKKSAGVVQFDTT-RNRILAAGEDNQIKFWDM 617 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~ 617 (1130)
++++. |-++++||...+. .+.++. |+..-+..+.|++- ..++++.+.|+.++||+.
T Consensus 251 aSasY----DmT~riw~~~~~ds~~e~~~-~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 251 ASASY----DMTVRIWDPERQDSAIETVD-HHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhccc----cceEEecccccchhhhhhhh-ccceEEeccccccccCceeeecccccceeeecc
Confidence 77877 8999999998554 444444 44447777888864 468999999999999984
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=243.18 Aligned_cols=278 Identities=16% Similarity=0.270 Sum_probs=235.5
Q ss_pred EEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeC
Q 001184 350 VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFT 429 (1130)
Q Consensus 350 V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~ 429 (1130)
..-+.||..+ +||+|. ...|++|+..+++... ...-+...|+++.|+++|.+||+|..
T Consensus 180 ~nlldWss~n--~laVal-g~~vylW~~~s~~v~~-------------------l~~~~~~~vtSv~ws~~G~~LavG~~ 237 (484)
T KOG0305|consen 180 LNLLDWSSAN--VLAVAL-GQSVYLWSASSGSVTE-------------------LCSFGEELVTSVKWSPDGSHLAVGTS 237 (484)
T ss_pred hhHhhcccCC--eEEEEe-cceEEEEecCCCceEE-------------------eEecCCCceEEEEECCCCCEEEEeec
Confidence 3456788555 577775 4489999999998654 22333789999999999999999999
Q ss_pred CCeEEEEEecCCccceeeeeeec-CCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeee-EecCCCcCEEEEeec
Q 001184 430 KHLIHLYTYQGSNDLCQSLEIDA-HVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLF-QFEGHEAPVYSVCPH 506 (1130)
Q Consensus 430 d~~i~vwd~~~~~~~~~~~~~~~-h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~-~~~~h~~~v~~~~~~ 506 (1130)
+|.|.|||....+.++ .+.+ |...|-+++|. +. .+.+|+.|+.|..+| ...+... ++.+|...|..+.|+
T Consensus 238 ~g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws 310 (484)
T KOG0305|consen 238 DGTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS 310 (484)
T ss_pred CCeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC
Confidence 9999999999877665 5667 99999999999 44 789999999999999 4444433 488999999999996
Q ss_pred ccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEec-CCCeEEEeeecCCCCcEEEEeeCCCCceeEEEec
Q 001184 507 QKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSA-DGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG 585 (1130)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1130)
.++.++++|+.|+.+.|||.........+..|...|.+++|+| ....||+|+ +..|+.|++||..+++.+.....
T Consensus 311 --~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGG--Gs~D~~i~fwn~~~g~~i~~vdt 386 (484)
T KOG0305|consen 311 --PDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGG--GSADRCIKFWNTNTGARIDSVDT 386 (484)
T ss_pred --CCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcC--CCcccEEEEEEcCCCcEeccccc
Confidence 4668999999999999999988899999999999999999999 455667765 46699999999999999988774
Q ss_pred ccCceeEEEEEcCCCCEEEE--EeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001184 586 FRKKSAGVVQFDTTRNRILA--AGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANAD 663 (1130)
Q Consensus 586 ~~~~~v~~~~~~~~~~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 663 (1130)
...|..+.|++..+-|++ |..++.|.||++.+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-+
T Consensus 387 --gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 387 --GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS--RVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred --CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc--eeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 447999999999877776 45678999999999998888887765 799999999999999999999999999866
Q ss_pred C
Q 001184 664 G 664 (1130)
Q Consensus 664 ~ 664 (1130)
.
T Consensus 463 ~ 463 (484)
T KOG0305|consen 463 E 463 (484)
T ss_pred C
Confidence 4
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-24 Score=225.15 Aligned_cols=623 Identities=15% Similarity=0.191 Sum_probs=344.1
Q ss_pred eeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecC-CCe--e----eEecCCCcCEEEEeecccCCccEEEEE
Q 001184 445 CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS-GRK--L----FQFEGHEAPVYSVCPHQKENIHFIFST 517 (1130)
Q Consensus 445 ~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~-~~~--~----~~~~~h~~~v~~~~~~~~~~~~~l~s~ 517 (1130)
+....+.+|...|+++.|+|-... +|+||+.|..|+||.+. |-. + ..+.+..-.|.++.|++..|| |+..
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~-LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg--il~s 146 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADE-LLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG--ILAS 146 (1012)
T ss_pred cccceeecccceeeccCccccchh-hhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc--eEEe
Confidence 344457899999999999995555 79999999999999933 321 1 123333456789999998875 4444
Q ss_pred ecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC-CceeEEEecccCceeEEEEE
Q 001184 518 AVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE-GALKRTYIGFRKKSAGVVQF 596 (1130)
Q Consensus 518 s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~ 596 (1130)
+..|++++||+.+.+....+..|...|.++.|+.||..+++... +.+|+|||.+. ++.++...+|.+..-..+.|
T Consensus 147 ~a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscK----dkqirifDPRa~~~piQ~te~H~~~rdsRv~w 222 (1012)
T KOG1445|consen 147 GAHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCK----DKQIRIFDPRASMEPIQTTEGHGGMRDSRVLW 222 (1012)
T ss_pred ccCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecC----CcceEEeCCccCCCccccccccccchhheeee
Confidence 56799999999999999999999999999999999999999875 89999999875 67788888887654555777
Q ss_pred cCCCCEEEEEeCC----CcEEEEeCCC-CceeEEEeccCCCCCcceEEEcCCCCEEEEEe-CCCcEEEEEcCCCchhhhh
Q 001184 597 DTTRNRILAAGED----NQIKFWDMDN-VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT-ADQGIKILANADGLRALRA 670 (1130)
Q Consensus 597 ~~~~~~l~~~~~d----g~i~vwd~~~-~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~ 670 (1130)
.-+-.+|++.+.+ ..|++||... +..+.++...... .|.---|.||.++|+.++ .+..+..+++.+.+..+..
T Consensus 223 ~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~st-GvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~ 301 (1012)
T KOG1445|consen 223 AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSST-GVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSH 301 (1012)
T ss_pred ccchhhhhhcccchhhheeeeeeeccccCCcceeEEeeccc-ceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhh
Confidence 6655578877654 5699999876 4566666665432 455556889888776554 4677877777654322221
Q ss_pred hcccccccccc------cccccccc-------------cceee---------cc----cccccc----------------
Q 001184 671 IETRAYETSRA------STEMKVPG-------------SAVVT---------TI----TPVLSK---------------- 702 (1130)
Q Consensus 671 ~~~~~~~~~~~------~~~~~~~~-------------~~~~~---------~~----sp~~~~---------------- 702 (1130)
...+..+.... ...+..++ -+-.. .| -|+...
T Consensus 302 v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq 381 (1012)
T KOG1445|consen 302 VFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQ 381 (1012)
T ss_pred hhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCccceecCccc
Confidence 11111100000 00000000 00000 00 000000
Q ss_pred ----c--cccCCCCCCCCcccccCCC--------ccccCCCC----cccccccCC--------------Cccceeecccc
Q 001184 703 ----A--ERVDRSSPARPSTILNGAD--------SAARGIEK----PRNLEDISD--------------KTKPWELTEIV 750 (1130)
Q Consensus 703 ----~--~~~~~~~~~~~~~~~~~~~--------~~~~~~~~----~~~~~~~d~--------------~i~~w~~~~~~ 750 (1130)
. .-.++.....+........ ....+... .-.....+. .++-.+.....
T Consensus 382 ~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~~e~r~l~~~~~E 461 (1012)
T KOG1445|consen 382 VVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKKEEVRELDYRPYE 461 (1012)
T ss_pred cccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcchhhhhhcccccc
Confidence 0 0000111000000000000 00000000 000000000 00000000000
Q ss_pred CCcceeEEEecC-----CCCCccceEEEEEeccCCeEEE------eeeCCeEEeeecCCCCCCC----C--ccc-cccc-
Q 001184 751 DPLQCRVVAMPE-----STDSASKVARLLYTNSGIGILA------LWSNGVQKLWKWNRTEQNP----S--GKA-TAAV- 811 (1130)
Q Consensus 751 ~~~~~~~~~~~~-----~~~~~~~i~~l~~s~~g~~l~~------~~~dg~i~iw~~~~~~~~~----~--~~~-~~~~- 811 (1130)
. ......++ ..+..+++..+. |....++- ..+-.+..+-.-..++..| . |.. .+..
T Consensus 462 ~---~~g~~~~~~dad~~~g~sS~~s~~~--~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~ 536 (1012)
T KOG1445|consen 462 K---ENGVHTPNADADSTQGNSSPISTIS--PEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNR 536 (1012)
T ss_pred c---ccCccCCCcccccccCCCCCccccC--CCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCcccccc
Confidence 0 00000000 000001010000 00000000 0000000000000000000 0 000 0000
Q ss_pred ---------------ccccccCCCCcceecc-----CCC-CCCCceeEEEEecCCCEEEE---EeCCeEEEEECCCc-ee
Q 001184 812 ---------------APQHWQPSNGLLMTND-----VPE-NAEDVVPCVALSKNDSYVMS---AGGGKVSLFNMMNF-KV 866 (1130)
Q Consensus 812 ---------------~~~~w~~~~~~~~~~~-----~~~-~~~~~i~~l~~s~dg~~la~---~~dg~i~iwd~~~~-~~ 866 (1130)
.+.-+....|...... +.+ ...-+-.+=-|..+.+++|+ |+.|.|-||++..- ++
T Consensus 537 v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~PGrL 616 (1012)
T KOG1445|consen 537 VPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRL 616 (1012)
T ss_pred ccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCCCceEEEEEcCCCCCC
Confidence 0001111111110000 000 00001111123335556654 34789999998642 22
Q ss_pred E----EEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecC-------eEEEEEecCCCCeeEEEEccC-CCeEEE
Q 001184 867 M----TTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD-------EVKTKLKGHQKHITGLAFSTN-LNILVS 934 (1130)
Q Consensus 867 ~----~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-------~~~~~l~~h~~~V~~l~~s~d-g~~L~s 934 (1130)
- -.+ .....|+.+.|.|.|...||++++||.|++|.+..+ .....+.+|...|+++.|+|- ...|++
T Consensus 617 PDgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~ 695 (1012)
T KOG1445|consen 617 PDGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAV 695 (1012)
T ss_pred Cccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhh
Confidence 1 111 134569999999999999999999999999999754 345678899999999999995 468999
Q ss_pred EeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE-EcCCcEEEEECCCceee-eeeecCCCCCCCe
Q 001184 935 SGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGSKMECI-RQWVPQDVLSSPI 1012 (1130)
Q Consensus 935 ~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~v 1012 (1130)
++.|.+|++||+.+.+..... ..+.+.|-.++|||||+.+++ +.|++++||+...++.. ..-.+.. ...-
T Consensus 696 asyd~Ti~lWDl~~~~~~~~l------~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpv--gtRg 767 (1012)
T KOG1445|consen 696 ASYDSTIELWDLANAKLYSRL------VGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPV--GTRG 767 (1012)
T ss_pred hhccceeeeeehhhhhhhhee------ccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCc--cCcc
Confidence 999999999999986543222 223488999999999999998 89999999999876542 2222221 2344
Q ss_pred EEEEECCCCCEEEEEeCC----CcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEE
Q 001184 1013 SSAAYSCNSQLIYATFTD----GSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVK 1088 (1130)
Q Consensus 1013 ~~v~~s~dg~~l~t~~~D----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~ 1088 (1130)
..+.|--||+++++.+.| ..|.+||..+........ ...+ .+-..+.=.|.++.+.++++|-.|..|.
T Consensus 768 ARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t-----~~lD---vaps~LvP~YD~Ds~~lfltGKGD~~v~ 839 (1012)
T KOG1445|consen 768 ARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYT-----QVLD---VAPSPLVPHYDYDSNVLFLTGKGDRFVN 839 (1012)
T ss_pred eeEEEEecCcEEEEecccccchhhhhhhhhhhccCCccee-----eeec---ccCccccccccCCCceEEEecCCCceEE
Confidence 567788899999888865 469999987654221110 0000 0001112235555677888999999999
Q ss_pred EEeCCCCcc
Q 001184 1089 VIEPSETER 1097 (1130)
Q Consensus 1089 vW~~~~~~~ 1097 (1130)
.|.+.-+++
T Consensus 840 ~yEv~~esP 848 (1012)
T KOG1445|consen 840 MYEVIYESP 848 (1012)
T ss_pred EEEecCCCc
Confidence 999987775
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=229.44 Aligned_cols=294 Identities=15% Similarity=0.198 Sum_probs=232.2
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeecc----ccccceeeeeecCCCccEEEEEEcC
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMS----NCSMMLQAAIVKDSSISVSRVAWSP 419 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~h~~~V~~v~~sp 419 (1130)
..|.-.|.||+++||+++ +++++.+|+|.=|++.+|+.... +|... ....+.+..- ++|...|.+++.|+
T Consensus 139 ~~H~~s~~~vals~d~~~-~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~ 212 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKR-VFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTLAVSS 212 (479)
T ss_pred ccccCcceEEEeeccccc-eeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEEEEcC
Confidence 359999999999999995 89999999999999999986521 11111 0111222111 48999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCc
Q 001184 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA 498 (1130)
Q Consensus 420 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~ 498 (1130)
||+|||+|+.|..|.||+.++.+.++ .+.+|.+.|.+++|-.... -+++++.|++|++|+ .....+.++.||..
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyGHqd 287 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYGHQD 287 (479)
T ss_pred CCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhCCcc
Confidence 99999999999999999999987665 6899999999999987766 689999999999999 77778899999999
Q ss_pred CEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc
Q 001184 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1130)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1130)
.|.++... .-+..+-.|+.|+++++|++. ......+.++...+.|++|-.+. .+++|+. +|.|.+|++...+
T Consensus 288 ~v~~IdaL--~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~~-HfvsGSd----nG~IaLWs~~KKk 359 (479)
T KOG0299|consen 288 GVLGIDAL--SRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFINDE-HFVSGSD----NGSIALWSLLKKK 359 (479)
T ss_pred ceeeechh--cccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEeccc-ceeeccC----CceEEEeeecccC
Confidence 99999764 333555566699999999994 45555677777789999998654 5677775 9999999999988
Q ss_pred eeEEEecccC-----------ceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----ceeEEEeccCCCCCcceEEEcCC
Q 001184 579 LKRTYIGFRK-----------KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV----NMLTSTEAEGGLPSLPRLRFNKE 643 (1130)
Q Consensus 579 ~~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~i~~v~~s~~ 643 (1130)
++.+....+. ..+++++..|..+++++|+.+|.|++|-+..+ +++..+... +-|++++|+++
T Consensus 360 plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~---GfVNsl~f~~s 436 (479)
T KOG0299|consen 360 PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV---GFVNSLAFSNS 436 (479)
T ss_pred ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc---cEEEEEEEccC
Confidence 8876653321 15778999999999999999999999998877 445555543 36899999999
Q ss_pred CCEEEEE-eCCCcEEEE
Q 001184 644 GNLLVVT-TADQGIKIL 659 (1130)
Q Consensus 644 ~~~l~~~-~~dg~i~iw 659 (1130)
|+.+++| +....+--|
T Consensus 437 gk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 437 GKRIVAGIGKEHRLGRW 453 (479)
T ss_pred CCEEEEeccccccccee
Confidence 9966665 333334334
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-26 Score=235.26 Aligned_cols=293 Identities=19% Similarity=0.264 Sum_probs=226.8
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
+|...|.++++.|.|.+ +++|+.|.+|++||+..-..... .|+. +.......|.+++||+.|..|
T Consensus 165 hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~~-~fr~-------------l~P~E~h~i~sl~ys~Tg~~i 229 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASMR-SFRQ-------------LQPCETHQINSLQYSVTGDQI 229 (641)
T ss_pred CCceEEEEeeecCCCce-eeeccccceEEEEecccccccch-hhhc-------------cCcccccccceeeecCCCCeE
Confidence 47789999999999997 99999999999999986543321 2332 223345589999999999999
Q ss_pred EEEeCCCeEEEEEecCCccc---------eeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-c-CCCeeeEe
Q 001184 425 GVAFTKHLIHLYTYQGSNDL---------CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-L-SGRKLFQF 493 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~---------~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~-~~~~~~~~ 493 (1130)
++.+.....+|+|-.+-... .-...-.||...+++.+|.|+.+. .++|++.||++|||| . ..+.+..+
T Consensus 230 Lvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiWdv~~~k~q~qVi 308 (641)
T KOG0772|consen 230 LVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIWDVNNTKSQLQVI 308 (641)
T ss_pred EEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEEecCCchhheeEE
Confidence 88888889999997653322 222334689999999999999988 799999999999999 3 22333333
Q ss_pred c-----CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCccee---eecCCCc--cEEEEEEecCCCeEEEeeecC
Q 001184 494 E-----GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV---DYDAPGL--WCTTMLYSADGSRLFSCGTSK 563 (1130)
Q Consensus 494 ~-----~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~---~~~~~~~--~v~~~~~s~~~~~l~~~~~~~ 563 (1130)
+ +..-+++.++|+ +++..|++|+.||.|.+|+........ ....|.. .|+++.|++||++|++-+.
T Consensus 309 k~k~~~g~Rv~~tsC~~n--rdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~-- 384 (641)
T KOG0772|consen 309 KTKPAGGKRVPVTSCAWN--RDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGF-- 384 (641)
T ss_pred eeccCCCcccCceeeecC--CCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccC--
Confidence 2 344567788885 566889999999999999975543322 3344544 8999999999999999876
Q ss_pred CCCcEEEEeeCCCC-ceeEEEecccC-ceeEEEEEcCCCCEEEEEe------CCCcEEEEeCCCCceeEEEeccCCCCCc
Q 001184 564 EGDSHLVEWNESEG-ALKRTYIGFRK-KSAGVVQFDTTRNRILAAG------EDNQIKFWDMDNVNMLTSTEAEGGLPSL 635 (1130)
Q Consensus 564 ~~~~~i~~wd~~~~-~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~~~~~~~i 635 (1130)
|..+++||++.. +++....+... ..-+.++|+|+.+.|++|. ..|.+++||..+.+.++.+..... .|
T Consensus 385 --D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~a--Sv 460 (641)
T KOG0772|consen 385 --DDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTA--SV 460 (641)
T ss_pred --CCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCc--eE
Confidence 899999999874 34444443222 1345589999999999975 457899999999999998877643 78
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 636 PRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 636 ~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
..+.|+|.-+.+++|+.||++++|--
T Consensus 461 v~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 461 VRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred EEEeecchhhheeeecCCCceEEEEC
Confidence 89999999899999999999999754
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.1e-25 Score=213.16 Aligned_cols=253 Identities=17% Similarity=0.234 Sum_probs=192.2
Q ss_pred ceEEEEEeccCCeEEEee-eCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCE
Q 001184 769 KVARLLYTNSGIGILALW-SNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSY 847 (1130)
Q Consensus 769 ~i~~l~~s~~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~ 847 (1130)
..+.+.|+||-+.+++.. ....+++|.+..... |...- ...-||- ..+.+.|.-.+..+-+..++++
T Consensus 134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d---G~~~~--~~v~~D~-------~~f~~kh~v~~i~iGiA~~~k~ 201 (420)
T KOG2096|consen 134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD---GSGSH--HFVHIDN-------LEFERKHQVDIINIGIAGNAKY 201 (420)
T ss_pred CceEEEECCCcceEEEEEccCCEEEEEEeeeccc---CCCCc--ccccccc-------cccchhcccceEEEeecCCceE
Confidence 345678888877666554 466788887644221 11100 0111221 1133456777888888889999
Q ss_pred EEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeec---C-----eEEEEEecCCC
Q 001184 848 VMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV---D-----EVKTKLKGHQK 918 (1130)
Q Consensus 848 la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~---~-----~~~~~l~~h~~ 918 (1130)
|++++ |..|.+|++. |+.+..+......-+..+.|| +|+++|+++-.-.|++|.+-- | +.+..|+||..
T Consensus 202 imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~s 279 (420)
T KOG2096|consen 202 IMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQS 279 (420)
T ss_pred EEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchh
Confidence 99999 7889999998 888888887777778899999 999999999999999999742 2 34567899999
Q ss_pred CeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEe-----ccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEEC
Q 001184 919 HITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQ-----LPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDG 993 (1130)
Q Consensus 919 ~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~ 993 (1130)
.|.+++||++..++++++.||++++||.+-.......+.. .+..........+..+|.|..|+++....+++|..
T Consensus 280 aV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~s 359 (420)
T KOG2096|consen 280 AVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFAS 359 (420)
T ss_pred heeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEc
Confidence 9999999999999999999999999998742221111111 22222335566999999999999999999999999
Q ss_pred CCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeC
Q 001184 994 SKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDA 1038 (1130)
Q Consensus 994 ~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~ 1038 (1130)
++|+....+... |+..|++++|++||+++++++ |..++|..-
T Consensus 360 e~g~~~~~~e~~--h~~~Is~is~~~~g~~~atcG-dr~vrv~~n 401 (420)
T KOG2096|consen 360 EDGKDYPELEDI--HSTTISSISYSSDGKYIATCG-DRYVRVIRN 401 (420)
T ss_pred ccCccchhHHHh--hcCceeeEEecCCCcEEeeec-ceeeeeecC
Confidence 999988777644 489999999999999999998 889999863
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-26 Score=243.63 Aligned_cols=241 Identities=17% Similarity=0.243 Sum_probs=206.8
Q ss_pred EEEEc-CCCCEEEEEeCCCeEEEEEecCCccc---eeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCC-
Q 001184 414 RVAWS-PDGNFIGVAFTKHLIHLYTYQGSNDL---CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG- 487 (1130)
Q Consensus 414 ~v~~s-pdg~~las~~~d~~i~vwd~~~~~~~---~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~- 487 (1130)
.+..+ |+++||.+||.||.|++|++...... ....+++.|.+.|++++...+++ .|+++|.|-+|++|+ ..+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence 34444 46788999999999999998654321 12346889999999999999998 799999999999999 555
Q ss_pred -CeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcc--ee--------eec-CCCccEEEEEEecCCCe
Q 001184 488 -RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS--RV--------DYD-APGLWCTTMLYSADGSR 555 (1130)
Q Consensus 488 -~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--~~--------~~~-~~~~~v~~~~~s~~~~~ 555 (1130)
-++.++..|...|.|+++- ..+..++++||.|+.|.+||++++.. .. .+. ++...|++++.++.|..
T Consensus 107 ~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred chhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 6788899999999999984 34557999999999999999997633 11 122 56668999999999999
Q ss_pred EEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCc
Q 001184 556 LFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSL 635 (1130)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i 635 (1130)
+++|+. .+.|++||.++++.+..+.||.+ .|.++..++||.++++++.||+|++||+...+++.++..|.. .+
T Consensus 186 ivsGgt----ek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~V 258 (735)
T KOG0308|consen 186 IVSGGT----EKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE--GV 258 (735)
T ss_pred EEecCc----ccceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--ce
Confidence 999987 88999999999999999999888 899999999999999999999999999999999999888765 69
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 636 PRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 636 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
.++..+|+-..+++|+.||.|..=|+.+.
T Consensus 259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 259 WALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 99999999999999999999988777664
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-25 Score=208.49 Aligned_cols=247 Identities=16% Similarity=0.226 Sum_probs=210.1
Q ss_pred ecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001184 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1130)
Q Consensus 405 ~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd 484 (1130)
+.+|...|.+++|+.||..||+|+.|+++.+|+++..+. .......+|.+.|..++|.|.... .+++++.|++|++||
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~-~~~~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF-RKELVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRIWD 93 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhh-hhhhcccCCCcchhhheeCCCCCc-ceEEecCCceEEEEE
Confidence 568999999999999999999999999999999998743 333457899999999999997776 799999999999999
Q ss_pred -cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecC
Q 001184 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1130)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1130)
..+++........+.+. +.| ++++.+++.++.|..|.+.|.++.+....... ...+.-++|+.++.+++...
T Consensus 94 ~r~~k~~~~i~~~~eni~-i~w--sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~--- 166 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENIN-ITW--SPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTN--- 166 (313)
T ss_pred eccCcEEEEeeccCcceE-EEE--cCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEec---
Confidence 99999988876555554 445 45668999999999999999987665554332 33467788887777776653
Q ss_pred CCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCC
Q 001184 564 EGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1130)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~ 643 (1130)
+.|.|.|.....-+++..+..|.. ...|+.|+|+|+++++|+.|-.+-+||++..-+++.+....- +|..+.||.|
T Consensus 167 -GlG~v~ILsypsLkpv~si~AH~s-nCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw--pVRTlSFS~d 242 (313)
T KOG1407|consen 167 -GLGCVEILSYPSLKPVQSIKAHPS-NCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW--PVRTLSFSHD 242 (313)
T ss_pred -CCceEEEEeccccccccccccCCc-ceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC--ceEEEEeccC
Confidence 379999999999999999999875 678899999999999999999999999998888888776654 7999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCC
Q 001184 644 GNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
|++||+++.|..|-|=++++|
T Consensus 243 g~~lASaSEDh~IDIA~vetG 263 (313)
T KOG1407|consen 243 GRMLASASEDHFIDIAEVETG 263 (313)
T ss_pred cceeeccCccceEEeEecccC
Confidence 999999999999999888777
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.4e-25 Score=213.85 Aligned_cols=243 Identities=19% Similarity=0.248 Sum_probs=203.9
Q ss_pred CCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCc--EEEEEeCCCcEEEEEeec
Q 001184 830 ENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNN--IIAIGMEDSTIQIYNVRV 906 (1130)
Q Consensus 830 ~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~--~lasg~~dg~v~iwd~~~ 906 (1130)
..|.+.|+++|+ ++.++|+|+ |.+|+|||+.+...+..+-.|.+.|+++.|.+ +.. .|.+|+.||.|.+|+...
T Consensus 40 ~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~ 116 (362)
T KOG0294|consen 40 SAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGS 116 (362)
T ss_pred cccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCC
Confidence 379999999998 678999998 89999999999999999999999999999998 553 788999999999999999
Q ss_pred CeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCC
Q 001184 907 DEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHET 986 (1130)
Q Consensus 907 ~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~ 986 (1130)
.+++..+++|.+.|+.++.+|.|+..++.+.|+.++.||+-.++......+. ...+.+.|+|.|.+++++..+
T Consensus 117 W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-------~~at~v~w~~~Gd~F~v~~~~ 189 (362)
T KOG0294|consen 117 WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-------NKATLVSWSPQGDHFVVSGRN 189 (362)
T ss_pred eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC-------CcceeeEEcCCCCEEEEEecc
Confidence 9999999999999999999999999999999999999999997753333222 334559999999999999899
Q ss_pred cEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeE
Q 001184 987 QLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPL 1066 (1130)
Q Consensus 987 ~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1130)
.|-+|.+.+-.....+... ..+.++.|. ++..|++|++|+.|++||-+.+...+.+..|. ..+..+
T Consensus 190 ~i~i~q~d~A~v~~~i~~~----~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~---------~RVK~i 255 (362)
T KOG0294|consen 190 KIDIYQLDNASVFREIENP----KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHE---------NRVKDI 255 (362)
T ss_pred EEEEEecccHhHhhhhhcc----ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecch---------hheeee
Confidence 9999999988777666543 456677765 67789999999999999999877777766433 333333
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 001184 1067 VVTSHPQEPNQLAVGLTDGSVKVIEPSETER 1097 (1130)
Q Consensus 1067 ~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~~ 1097 (1130)
.. |..+++.+|+|+|.||.|+|||+.....
T Consensus 256 ~~-~~~~~~~~lvTaSSDG~I~vWd~~~~~k 285 (362)
T KOG0294|consen 256 AS-YTNPEHEYLVTASSDGFIKVWDIDMETK 285 (362)
T ss_pred EE-EecCCceEEEEeccCceEEEEEcccccc
Confidence 33 3333678999999999999999987744
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.1e-24 Score=208.51 Aligned_cols=294 Identities=16% Similarity=0.286 Sum_probs=242.9
Q ss_pred eeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcE
Q 001184 489 KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSH 568 (1130)
Q Consensus 489 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1130)
..+.|....+.|.++.|+ .+|..+++++.|.++++||..++.....+..+...+..++|....+.++.++. ..+..
T Consensus 6 ~ak~f~~~~~~i~sl~fs--~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt--k~d~t 81 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFS--DDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST--KEDDT 81 (311)
T ss_pred cccccccCCCceeEEEec--CCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC--CCCCc
Confidence 344556667899999985 56689999999999999999999999999888888999999888777777654 34789
Q ss_pred EEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEE
Q 001184 569 LVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLV 648 (1130)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~ 648 (1130)
|+..++.+.+.++.|.||.+ .|..++.+|-+..+++++.|++|++||++..++...+...+. ..++|+|+|-++|
T Consensus 82 IryLsl~dNkylRYF~GH~~-~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~----pi~AfDp~GLifA 156 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFPGHKK-RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR----PIAAFDPEGLIFA 156 (311)
T ss_pred eEEEEeecCceEEEcCCCCc-eEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC----cceeECCCCcEEE
Confidence 99999999999999999888 899999999999999999999999999998888877766543 6789999999999
Q ss_pred EEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCC
Q 001184 649 VTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGI 728 (1130)
Q Consensus 649 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1130)
++...+.|++||++.-.. .|
T Consensus 157 ~~~~~~~IkLyD~Rs~dk------------------------------gP------------------------------ 176 (311)
T KOG1446|consen 157 LANGSELIKLYDLRSFDK------------------------------GP------------------------------ 176 (311)
T ss_pred EecCCCeEEEEEecccCC------------------------------CC------------------------------
Confidence 999888999999754300 00
Q ss_pred CCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccc
Q 001184 729 EKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKAT 808 (1130)
Q Consensus 729 ~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 808 (1130)
+..+.
T Consensus 177 --------------------------F~tf~------------------------------------------------- 181 (311)
T KOG1446|consen 177 --------------------------FTTFS------------------------------------------------- 181 (311)
T ss_pred --------------------------ceeEc-------------------------------------------------
Confidence 00000
Q ss_pred cccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCC---eEEEEEeC
Q 001184 809 AAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPA---STFLAFHP 884 (1130)
Q Consensus 809 ~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~---i~~l~~sp 884 (1130)
+..+...+.+.+.|||||++++.+. .+.+++.|.-+|..+.++.++... -...+|+|
T Consensus 182 -------------------i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP 242 (311)
T KOG1446|consen 182 -------------------ITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP 242 (311)
T ss_pred -------------------cCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC
Confidence 0002345567899999999998887 678999999999999998876543 26788999
Q ss_pred CCCcEEEEEeCCCcEEEEEeecCeEEEEEec-CCCCeeEEEEccCCCeEEEEeCCCcEEEEECCC
Q 001184 885 QDNNIIAIGMEDSTIQIYNVRVDEVKTKLKG-HQKHITGLAFSTNLNILVSSGSDAQLIFWNTDT 948 (1130)
Q Consensus 885 ~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~ 948 (1130)
+++++.+|+.||+|.+|++++++.+..+++ +.+++.++.|+|.-.+++++ +..+.+|-.+.
T Consensus 243 -ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~ 304 (311)
T KOG1446|consen 243 -DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDE 304 (311)
T ss_pred -CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEeccc
Confidence 999999999999999999999999999998 79999999999987666665 55688887664
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-23 Score=231.97 Aligned_cols=506 Identities=15% Similarity=0.215 Sum_probs=320.6
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCc-eEEEEEcCCCcEEEEe-cCCCee
Q 001184 413 SRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQ-LCIVTCGDDKLIRVWD-LSGRKL 490 (1130)
Q Consensus 413 ~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~-l~l~s~s~d~~v~iwd-~~~~~~ 490 (1130)
..-.||+|+++++.... ..|.||...+|.++. .+.+|..++..+.+.|.... .++++++.||.|++|| ..+..+
T Consensus 20 ~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Ll 95 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCTG-NFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELL 95 (792)
T ss_pred cccccccCCcEEEEeeC-CEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEE
Confidence 34569999999987764 579999999999887 68999999999999987663 3788999999999999 888888
Q ss_pred eEecCCCcCEEEEeecc------------cCCccEEEEEecC--CcEEEEEccCCccee-eecCCCccEEEEEEecCCCe
Q 001184 491 FQFEGHEAPVYSVCPHQ------------KENIHFIFSTAVD--GKIKAWLYDNVGSRV-DYDAPGLWCTTMLYSADGSR 555 (1130)
Q Consensus 491 ~~~~~h~~~v~~~~~~~------------~~~~~~l~s~s~d--g~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~ 555 (1130)
+++..+. ++..+.+.+ ..+-..+.+.+.+ ++++-+.+.+..... .+......-.++.+++.|.+
T Consensus 96 kt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~ 174 (792)
T KOG1963|consen 96 KTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEF 174 (792)
T ss_pred EEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceE
Confidence 8876433 333332211 1111111111111 111112211111000 01111111467888898988
Q ss_pred EEEeeecCCCCcEEEEeeCCCCce---eEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCC--CceeEEEeccC
Q 001184 556 LFSCGTSKEGDSHLVEWNESEGAL---KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN--VNMLTSTEAEG 630 (1130)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~ 630 (1130)
.+.+. +..+.+|+...+.. .+....++...+++.+++|+++++++|..||+|.+|.--. +........|-
T Consensus 175 ~~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW 249 (792)
T KOG1963|consen 175 KGIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW 249 (792)
T ss_pred EEEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe
Confidence 87776 56788998877541 1112223443578999999999999999999999996443 33333333444
Q ss_pred CCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCC
Q 001184 631 GLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSS 710 (1130)
Q Consensus 631 ~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~ 710 (1130)
|...|.+++|+++|.+|.+|+..|.+.+|.+.++.+. |-|.
T Consensus 250 H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq----------------------------fLPR----------- 290 (792)
T KOG1963|consen 250 HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ----------------------------FLPR----------- 290 (792)
T ss_pred cccccceeEEecCCceEeecccceEEEEEeecCCCcc----------------------------cccc-----------
Confidence 5558999999999999999999999999998877210 1111
Q ss_pred CCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCe
Q 001184 711 PARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGV 790 (1130)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~ 790 (1130)
-.+.|..+.++||+........
T Consensus 291 -------------------------------------------------------Lgs~I~~i~vS~ds~~~sl~~~--- 312 (792)
T KOG1963|consen 291 -------------------------------------------------------LGSPILHIVVSPDSDLYSLVLE--- 312 (792)
T ss_pred -------------------------------------------------------cCCeeEEEEEcCCCCeEEEEec---
Confidence 2233444444444444444444
Q ss_pred EEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEE
Q 001184 791 QKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTF 870 (1130)
Q Consensus 791 i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~ 870 (1130)
|+.|.+....+.+...++
T Consensus 313 --------------------------------------------------------------DNqI~li~~~dl~~k~tI 330 (792)
T KOG1963|consen 313 --------------------------------------------------------------DNQIHLIKASDLEIKSTI 330 (792)
T ss_pred --------------------------------------------------------------CceEEEEeccchhhhhhc
Confidence 455555544443333332
Q ss_pred eC-----------CCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEe-----------cCCCCeeEEEEccC
Q 001184 871 MS-----------PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLK-----------GHQKHITGLAFSTN 928 (1130)
Q Consensus 871 ~~-----------~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-----------~h~~~V~~l~~s~d 928 (1130)
.+ ..+-.+.++++| ....++..+..|.|++||+.+.+.+..+. .+.-.|++++.+-.
T Consensus 331 sgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~ 409 (792)
T KOG1963|consen 331 SGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRF 409 (792)
T ss_pred cCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhcc
Confidence 22 123356788888 56667778899999999999877665543 12335788888989
Q ss_pred CCeEEEEeC--------CC--cEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCc-EEE-EEcCCcEEEEECCCc
Q 001184 929 LNILVSSGS--------DA--QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV-RLL-VNHETQLAIYDGSKM 996 (1130)
Q Consensus 929 g~~L~s~s~--------Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~-~~~d~~i~v~d~~~~ 996 (1130)
|.++++.-. || .+++|-.......-.....+...|....+..+..++... .++ ++.|+.+++|-..+.
T Consensus 410 gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~ 489 (792)
T KOG1963|consen 410 GSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDD 489 (792)
T ss_pred ceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecc
Confidence 999998753 33 488999887666555555555555444444444444433 444 478999999998432
Q ss_pred eeeee-------eecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC-cccccccCCCcccccCCCCCceeeeEEE
Q 001184 997 ECIRQ-------WVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS-LRLRCRIAPSAYMSQASPNSQTVFPLVV 1068 (1130)
Q Consensus 997 ~~~~~-------~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1130)
+-+.. ...+..|..++++.+||.||..|+++. |++|.+||..+ .++.+........ +.+-.. .
T Consensus 490 ~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~-~~~Itiwd~~~~~~l~~~~~~~~~~-----~~~~~~---~ 560 (792)
T KOG1963|consen 490 SNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSF-DDTITIWDYDTKNELLCTEGSRNWP-----IAELLF---T 560 (792)
T ss_pred cccCcCccceEEeeeeccccCcccchhhcCCCcEEEEec-CCEEEEecCCChhhhhccccccccc-----hHhHhh---h
Confidence 22111 111224588999999999998777665 88999999999 4444444322211 111111 1
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEeCCCCccCC
Q 001184 1069 TSHPQEPNQLAVGLTDGSVKVIEPSETERKW 1099 (1130)
Q Consensus 1069 ~~~~~~~~~l~s~~~Dg~v~vW~~~~~~~~w 1099 (1130)
+-.+. ...++....+.+.+|++.+....|
T Consensus 561 ~~~~~--~~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 561 AQTQN--DGALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred ccccc--ccceeeccCceEehHhhhhhheec
Confidence 11111 234444557789999999999999
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-25 Score=245.27 Aligned_cols=274 Identities=18% Similarity=0.234 Sum_probs=211.9
Q ss_pred CCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCC------C------------------CCc-cccccc--------
Q 001184 765 DSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQ------N------------------PSG-KATAAV-------- 811 (1130)
Q Consensus 765 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~------~------------------~~~-~~~~~~-------- 811 (1130)
.|.+.|.++-|++||++||++|.|+.|+||.+...+. . ... +.....
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 5999999999999999999999999999999876110 0 000 000000
Q ss_pred -ccccccCCCCcceecc--CCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCC
Q 001184 812 -APQHWQPSNGLLMTND--VPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDN 887 (1130)
Q Consensus 812 -~~~~w~~~~~~~~~~~--~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~ 887 (1130)
...+.......+.... ...+|...|..+.||.++- |++++ |.+|+||++...+|++.|. |.+-|+|++|+|.|.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~f-LLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNF-LLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCe-eEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence 0011111111111111 1238999999999998874 55555 9999999999999999997 899999999999999
Q ss_pred cEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCC--CC
Q 001184 888 NIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGK--LP 965 (1130)
Q Consensus 888 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~--~~ 965 (1130)
+++++|+-||.|+||++...+.+.-...+ .-|++++|+|||+..+.|+.+|.+++|+....+......+...... ..
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence 99999999999999999988877655544 7799999999999999999999999999998766555444433222 11
Q ss_pred CCeEEEEEcCCCc--EEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcc
Q 001184 966 VGETRVQFHSDQV--RLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLR 1042 (1130)
Q Consensus 966 ~~v~~~~~s~d~~--~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~ 1042 (1130)
..|+.+.|.|... .|+++.|..|||||..+..++..+.+.....+ -....|+.||++|+++++|..|+||++....
T Consensus 502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~S-Q~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSS-QISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCc-ceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 3699999987544 88889999999999999899888887755333 4567899999999999999999999985433
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.5e-25 Score=226.70 Aligned_cols=285 Identities=15% Similarity=0.243 Sum_probs=232.8
Q ss_pred CccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCC
Q 001184 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1130)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1130)
..+.|.+++|+|...+=++....-.+.+|+...... ... + ......+.+++|-.||
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~----------------------~k~-~-srFk~~v~s~~fR~DG 80 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSV----------------------RKT-F-SRFKDVVYSVDFRSDG 80 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhhh----------------------hhh-H-HhhccceeEEEeecCC
Confidence 667899999999877666666666777776433111 000 0 1257789999999999
Q ss_pred CEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEE
Q 001184 846 SYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLA 924 (1130)
Q Consensus 846 ~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~ 924 (1130)
+++|+|+ .|.|+|||+.+...++.+.+|..++..+.|+|+++.++++|++|+.+++||+.+......+.+|++.|.+.+
T Consensus 81 ~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~ 160 (487)
T KOG0310|consen 81 RLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD 160 (487)
T ss_pred eEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence 9999998 699999998888888999999999999999999999999999999999999999988778999999999999
Q ss_pred EccCC-CeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCcee-eeee
Q 001184 925 FSTNL-NILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMEC-IRQW 1002 (1130)
Q Consensus 925 ~s~dg-~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~-~~~~ 1002 (1130)
|+|-. ..++|||.||.|++||+.... ..... ..+..+|..+.+-|.|..++++....++|||+.+|.. +...
T Consensus 161 ~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~e---lnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 161 ISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVE---LNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSM 234 (487)
T ss_pred cccCCCeEEEecCCCceEEEEEeccCC---ceeEE---ecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhh
Confidence 99964 488999999999999998842 11122 2334789999999999999999999999999996554 4444
Q ss_pred ecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEe
Q 001184 1003 VPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGL 1082 (1130)
Q Consensus 1003 ~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 1082 (1130)
..| ...|+|+++..|+..|++|+.|+.|+|||+.+.+.+..+..+. .+++++-+| ++..++.|.
T Consensus 235 ~~H---~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~------------pvLsiavs~-dd~t~viGm 298 (487)
T KOG0310|consen 235 FNH---NKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG------------PVLSIAVSP-DDQTVVIGM 298 (487)
T ss_pred hcc---cceEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc------------ceeeEEecC-CCceEEEec
Confidence 334 7899999999999999999999999999999999888776332 245566667 567899999
Q ss_pred CCCcEEEEeCCCCc
Q 001184 1083 TDGSVKVIEPSETE 1096 (1130)
Q Consensus 1083 ~Dg~v~vW~~~~~~ 1096 (1130)
.+|.+.+=+...++
T Consensus 299 snGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 299 SNGLVSIRRREVKK 312 (487)
T ss_pred ccceeeeehhhccc
Confidence 99988777555444
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-24 Score=241.08 Aligned_cols=255 Identities=12% Similarity=0.115 Sum_probs=192.9
Q ss_pred EeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC-CCEEEEEeCCCeEEEEEecCCcc-
Q 001184 366 GCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD-GNFIGVAFTKHLIHLYTYQGSND- 443 (1130)
Q Consensus 366 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-g~~las~~~d~~i~vwd~~~~~~- 443 (1130)
|+.++.|++|+......+. .+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++..
T Consensus 50 GG~~gvI~L~~~~r~~~v~-------------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVI-------------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred CCceeEEEeeecCCCceEE-------------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 4556777777765443322 57899999999999997 78999999999999999986432
Q ss_pred c----eeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEe
Q 001184 444 L----CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA 518 (1130)
Q Consensus 444 ~----~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s 518 (1130)
. .....+.+|...|.+++|+|++.. ++++++.|++|+||| .+++.+..+. |...|.+++|++ +|.+|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTC 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEe
Confidence 1 122357899999999999999874 568999999999999 7777777775 668899999965 567999999
Q ss_pred cCCcEEEEEccCCcceeeecCCCccEEE-----EEEecCCCeEEEeeecCCCCcEEEEeeCCC-CceeEEEecccCce-e
Q 001184 519 VDGKIKAWLYDNVGSRVDYDAPGLWCTT-----MLYSADGSRLFSCGTSKEGDSHLVEWNESE-GALKRTYIGFRKKS-A 591 (1130)
Q Consensus 519 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~-----~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~-v 591 (1130)
.|+.|++||++++.....+..|...+.+ ..|++++.++++++.+...+++|++||++. ++++..+..+.... +
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L 266 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPL 266 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccce
Confidence 9999999999998888888888764432 335689999999886544456899999985 55665554332222 2
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCC
Q 001184 592 GVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEG 644 (1130)
Q Consensus 592 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~ 644 (1130)
......+++.++++|+.|+.|++|++..+. +..+.......++.+++|.|..
T Consensus 267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 267 IPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 223334557889999999999999998774 3344433344577889999854
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.4e-25 Score=223.95 Aligned_cols=252 Identities=19% Similarity=0.249 Sum_probs=214.3
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeee-------------ee--ecCCCCeeEEEEecCCCc
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSL-------------EI--DAHVGGVNDLAFSYPNKQ 468 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~-------------~~--~~h~~~V~~i~~s~d~~~ 468 (1130)
....|.-.|.||+++||+++..+++.+++|.=|++.+|+..+... .. .+|...+.+++.|+||+
T Consensus 137 ~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk- 215 (479)
T KOG0299|consen 137 VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK- 215 (479)
T ss_pred eeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc-
Confidence 366899999999999999999999999999999998887431110 01 37889999999999999
Q ss_pred eEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEE
Q 001184 469 LCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTM 547 (1130)
Q Consensus 469 l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 547 (1130)
+|++|+.|..|.||+ .+.+.++.+.+|.+.|.+++|.... ..+++++.|+.|++|+++......++.+|...|.++
T Consensus 216 -ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 216 -YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred -EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 899999999999999 9999999999999999999996544 579999999999999999988888999999999999
Q ss_pred EEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEe
Q 001184 548 LYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTE 627 (1130)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 627 (1130)
....-++.+-+++. |.++++|++. ......|.++.. .+.|++|-.+ ..+++|+.+|.|.+|++...+++.+..
T Consensus 293 daL~reR~vtVGgr----DrT~rlwKi~-eesqlifrg~~~-sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 293 DALSRERCVTVGGR----DRTVRLWKIP-EESQLIFRGGEG-SIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSR 365 (479)
T ss_pred chhcccceEEeccc----cceeEEEecc-ccceeeeeCCCC-CeeeEEEecc-cceeeccCCceEEEeeecccCceeEee
Confidence 98888888777766 9999999994 344456666544 7888888754 689999999999999999988877654
Q ss_pred ccCC----------CCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCch
Q 001184 628 AEGG----------LPSLPRLRFNKEGNLLVVTTADQGIKILANADGLR 666 (1130)
Q Consensus 628 ~~~~----------~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 666 (1130)
...+ ...|++++..|...++|+|+.+|.|++|.+.++.+
T Consensus 366 ~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 366 LAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred ccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc
Confidence 3211 12688999999999999999999999999988854
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-25 Score=249.11 Aligned_cols=262 Identities=20% Similarity=0.337 Sum_probs=222.6
Q ss_pred CCCCcccccCCcccceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeee
Q 001184 325 PSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAI 404 (1130)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1130)
++.+..|+............+|.+.|++++|..-+. +|++|+.|.+++|||..+|++.. +
T Consensus 227 ~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~-~lvsgS~D~t~rvWd~~sg~C~~-------------------~ 286 (537)
T KOG0274|consen 227 DSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGD-KLVSGSTDKTERVWDCSTGECTH-------------------S 286 (537)
T ss_pred CceeEEeecccceEEEeeccCCCCCceeEEEecCCC-EEEEEecCCcEEeEecCCCcEEE-------------------E
Confidence 334546665554444444567999999999998444 79999999999999999999987 6
Q ss_pred ecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001184 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1130)
Q Consensus 405 ~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd 484 (1130)
+.+|.+.|.++..-+ .++++|+.|.+|++|++.++.++. .+.+|.++|.++... +. ++++|+.|++|++||
T Consensus 287 l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~---l~~~h~~~V~~v~~~--~~--~lvsgs~d~~v~VW~ 357 (537)
T KOG0274|consen 287 LQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLN---LLRGHTGPVNCVQLD--EP--LLVSGSYDGTVKVWD 357 (537)
T ss_pred ecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEE---EeccccccEEEEEec--CC--EEEEEecCceEEEEE
Confidence 889999999988754 578889999999999999998776 566799999999998 55 899999999999999
Q ss_pred -cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCC-cceeeecCCCccEEEEEEecCCCeEEEeeec
Q 001184 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV-GSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
.++++++.+.+|...|.++.+... ..+++|+.|++|++||+++. ++...+..|..-+..+. ..+++|++++.
T Consensus 358 ~~~~~cl~sl~gH~~~V~sl~~~~~---~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~a- 431 (537)
T KOG0274|consen 358 PRTGKCLKSLSGHTGRVYSLIVDSE---NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL--LRDNFLVSSSA- 431 (537)
T ss_pred hhhceeeeeecCCcceEEEEEecCc---ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccc--cccceeEeccc-
Confidence 999999999999999999977432 68999999999999999999 88889998888775544 45788999886
Q ss_pred CCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEE
Q 001184 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTST 626 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 626 (1130)
|+.|++||..++++++.+.+.+...+..+++. ...+++++.||.+++||+++++....+
T Consensus 432 ---D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 432 ---DGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred ---cccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 89999999999999999998533467777665 468999999999999999999887765
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-24 Score=243.55 Aligned_cols=248 Identities=16% Similarity=0.229 Sum_probs=199.8
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccc----------eeeeeeecCCCCeeEEEEec-CCCceEEEEEcCC
Q 001184 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDL----------CQSLEIDAHVGGVNDLAFSY-PNKQLCIVTCGDD 477 (1130)
Q Consensus 409 ~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~----------~~~~~~~~h~~~V~~i~~s~-d~~~l~l~s~s~d 477 (1130)
-..|.....++|+..+++++.+.....|+..++..+ .....+.+|.+.|.+++|+| +++ +|++|+.|
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~D 97 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASED 97 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeCC
Confidence 345666777788777777777777777876554322 11224789999999999999 777 89999999
Q ss_pred CcEEEEe-cCC-------CeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEE
Q 001184 478 KLIRVWD-LSG-------RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLY 549 (1130)
Q Consensus 478 ~~v~iwd-~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 549 (1130)
++|++|| .++ ..+..+.+|...|.+++|+|.. ..+|++++.|++|++||+++......+..|...|.+++|
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~ 176 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEW 176 (493)
T ss_pred CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEE
Confidence 9999999 443 3567889999999999998754 368999999999999999998888888889999999999
Q ss_pred ecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEe----CCCcEEEEeCCCCc-eeE
Q 001184 550 SADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG----EDNQIKFWDMDNVN-MLT 624 (1130)
Q Consensus 550 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~vwd~~~~~-~~~ 624 (1130)
+|+|.+|++++. |+.|++||+++++.+..+.+|.......+.|.+++..+++++ .|+.|++||+++.. .+.
T Consensus 177 spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~ 252 (493)
T PTZ00421 177 NLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS 252 (493)
T ss_pred ECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCcee
Confidence 999999999986 999999999999999999888765556678888888888765 47899999998754 333
Q ss_pred EEeccCCCCCcceEEEcCCCCEEEEEe-CCCcEEEEEcCCC
Q 001184 625 STEAEGGLPSLPRLRFNKEGNLLVVTT-ADQGIKILANADG 664 (1130)
Q Consensus 625 ~~~~~~~~~~i~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~ 664 (1130)
....+ ....+....|++++++|++++ .|+.|++||+.++
T Consensus 253 ~~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 253 TVDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred EeccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 33322 223456678999999999887 5999999999876
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-25 Score=213.28 Aligned_cols=296 Identities=13% Similarity=0.197 Sum_probs=241.6
Q ss_pred cceeeec-cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEE
Q 001184 338 RAVACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVA 416 (1130)
Q Consensus 338 ~~~~~~~-~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 416 (1130)
..+.+.+ +|++.|+.|+-..... ++.+++.|.+.+||.+++|.++. .+.||.+.|++++
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~-------------------~Y~GH~GSVNsik 197 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLA-------------------TYTGHTGSVNSIK 197 (481)
T ss_pred EeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeecccccee-------------------eecccccceeeEE
Confidence 3455555 5999999999887766 89999999999999999999987 4789999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEe------cC--------C----------------------ccc-eeeeeeecCCCCeeE
Q 001184 417 WSPDGNFIGVAFTKHLIHLYTY------QG--------S----------------------NDL-CQSLEIDAHVGGVND 459 (1130)
Q Consensus 417 ~spdg~~las~~~d~~i~vwd~------~~--------~----------------------~~~-~~~~~~~~h~~~V~~ 459 (1130)
|++.+.++++++.|++..||.. .. + -.+ .+...+.+|.+.|.+
T Consensus 198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 9999999999999999999972 11 0 001 133567899999999
Q ss_pred EEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCc-ceeee
Q 001184 460 LAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG-SRVDY 537 (1130)
Q Consensus 460 i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~ 537 (1130)
..|...|+ .+++++.|.+..+|| .+|..+..+.||....+.++-+|.. .++++.+.|.+.++||++..- ....|
T Consensus 278 ~dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ--rLVvTsSrDtTFRLWDFReaI~sV~VF 353 (481)
T KOG0300|consen 278 CDWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ--RLVVTSSRDTTFRLWDFREAIQSVAVF 353 (481)
T ss_pred hhhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCcc--eEEEEeccCceeEeccchhhcceeeee
Confidence 99999999 699999999999999 9999999999999999999887654 799999999999999998543 34578
Q ss_pred cCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc-eeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001184 538 DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA-LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWD 616 (1130)
Q Consensus 538 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 616 (1130)
.+|...|+++.|..+.+ +++++. |.+|++||+++.+ ++.++. .+..++.++++..++.|+.--++..|++||
T Consensus 354 QGHtdtVTS~vF~~dd~-vVSgSD----DrTvKvWdLrNMRsplATIR--tdS~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 354 QGHTDTVTSVVFNTDDR-VVSGSD----DRTVKVWDLRNMRSPLATIR--TDSPANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred cccccceeEEEEecCCc-eeecCC----CceEEEeeeccccCcceeee--cCCccceeEeecCCceEEeccCCceEEEEe
Confidence 99999999999998764 566654 8999999998754 455555 344788899998888888888999999999
Q ss_pred CCCCceeEEE--eccCCCCCcceEEEcCCC--CEEEEEeCCCcEEEEEcCCC
Q 001184 617 MDNVNMLTST--EAEGGLPSLPRLRFNKEG--NLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 617 ~~~~~~~~~~--~~~~~~~~i~~v~~s~~~--~~l~~~~~dg~i~iw~~~~~ 664 (1130)
++..++.... ...++..-|.|++|..+. .-|++++.|..+.-|.+...
T Consensus 427 lnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 427 LNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 9765433221 233455578999998653 35788999999999988654
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=232.83 Aligned_cols=281 Identities=16% Similarity=0.303 Sum_probs=237.1
Q ss_pred eeeec-cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEE-EEE
Q 001184 340 VACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSR-VAW 417 (1130)
Q Consensus 340 ~~~~~-~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-v~~ 417 (1130)
+.+.+ +|...|..+++.++. .++++|+||++++|+-..++.+.. +.+.+|.+.|.+ +++
T Consensus 6 ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~-----------------~~~~~~~g~i~~~i~y 66 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLET-----------------HAFEGPKGFIANSICY 66 (745)
T ss_pred eEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccc-----------------eecccCcceeecccee
Confidence 44555 499999999998877 489999999999999876665432 246688888888 888
Q ss_pred cC-CCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCC
Q 001184 418 SP-DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGH 496 (1130)
Q Consensus 418 sp-dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h 496 (1130)
-+ |+-.|++|+.|.+|.+|...+...+. .+.+|...|.+++...++. ++|||.|.++++|- .+++...+.+|
T Consensus 67 ~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~-~~~l~~~l~gH 139 (745)
T KOG0301|consen 67 AESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR-IGELVYSLQGH 139 (745)
T ss_pred ccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec-chhhhcccCCc
Confidence 86 55579999999999999999877554 7899999999999887775 89999999999998 34566679999
Q ss_pred CcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC
Q 001184 497 EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE 576 (1130)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1130)
...|+++..-+.. .++|||.|.+|++|.- ++...++.+|...|+.+++-+++. +++|+. ||.|++|++ +
T Consensus 140 ~asVWAv~~l~e~---~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsN----Dg~Ir~w~~-~ 208 (745)
T KOG0301|consen 140 TASVWAVASLPEN---TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSN----DGSIRLWDL-D 208 (745)
T ss_pred chheeeeeecCCC---cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecC----CceEEEEec-c
Confidence 9999999876543 8999999999999965 567778899999999999998865 456654 999999998 7
Q ss_pred CceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcE
Q 001184 577 GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGI 656 (1130)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i 656 (1130)
|..+..+.+|.. -+.++....++..++++++|++++||+.. ++.+.+..+.. .|.++.+-++|. +++|+.||.|
T Consensus 209 ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~SDG~V 282 (745)
T KOG0301|consen 209 GEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGSDGRV 282 (745)
T ss_pred Cceeeeeeccce-EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEeccCceE
Confidence 999999999877 78889888888899999999999999986 77888877654 688998888886 7789999999
Q ss_pred EEEEcCC
Q 001184 657 KILANAD 663 (1130)
Q Consensus 657 ~iw~~~~ 663 (1130)
|||....
T Consensus 283 rVfT~~k 289 (745)
T KOG0301|consen 283 RVFTVDK 289 (745)
T ss_pred EEEEecc
Confidence 9998763
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.2e-26 Score=227.41 Aligned_cols=247 Identities=19% Similarity=0.283 Sum_probs=209.7
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
.+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....++.|..+.|+++.|.++++ .+++++.|+.+++|
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLW 246 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeee
Confidence 367899999999999999999999999999999998876 333446888899999999999999 78999999999999
Q ss_pred e-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeec
Q 001184 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
+ .+.+...+|.||++.|+++.|.... ..+++|+.|.+|+.||+....+..+.. ....+..++.+ ...++++..
T Consensus 247 nvd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~- 320 (459)
T KOG0288|consen 247 NVDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHF- 320 (459)
T ss_pred eccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeeccc-
Confidence 9 8889999999999999999886543 349999999999999998866655433 23345555554 445666655
Q ss_pred CCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCC--CCCcceEEE
Q 001184 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGG--LPSLPRLRF 640 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~i~~v~~ 640 (1130)
|++|+.||.++..+......+. .|+++..++++..+.+.+.|.++.+.|+.+.+....+...+. ....+.+.|
T Consensus 321 ---DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvf 395 (459)
T KOG0288|consen 321 ---DKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVF 395 (459)
T ss_pred ---ccceEEEeccCCceeeEeecCc--ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEE
Confidence 8889999999999998888643 799999999999999999999999999999998888766532 224788999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 641 NKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 641 s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
||++.|+++|+.||.|+||++.++
T Consensus 396 Spd~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 396 SPDGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred CCCCceeeeccCCCcEEEEEccCc
Confidence 999999999999999999999877
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-21 Score=214.19 Aligned_cols=277 Identities=17% Similarity=0.218 Sum_probs=223.4
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
.|..+-+.++|.|+|. +|.+++.||.|++|+....+.... ++.-+...|.+++-. +.+|
T Consensus 11 aht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~------------------ti~~~g~~v~~ia~~--s~~f 69 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPE------------------TIDISGELVSSIACY--SNHF 69 (933)
T ss_pred hccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCc------------------hhhccCceeEEEeec--ccce
Confidence 4888999999999999 689999999999999876532110 122366677777764 4599
Q ss_pred EEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEE
Q 001184 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1130)
++|+.+++|.+|...+++.-. .+..-+-++++++|+.+|+ +++.||.|-.|++-+ .+......+++|.++|.++
T Consensus 70 ~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l 144 (933)
T KOG1274|consen 70 LTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQL 144 (933)
T ss_pred EEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceeee
Confidence 999999999999998876432 2344567899999999999 899999999999999 8888999999999999999
Q ss_pred eecccCCccEEEEEecCCcEEEEEccCCcceeeecC-------C-CccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC
Q 001184 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA-------P-GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1130)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-------~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1130)
.|+| ++.+|++.+.||.|++||+.++.....+.. . ...+..++|+|+|..+++.+. ++.|.+|+..
T Consensus 145 ~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~r~ 218 (933)
T KOG1274|consen 145 SYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYSRK 218 (933)
T ss_pred eEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEccC
Confidence 9965 558999999999999999998776654432 2 346788999999777776665 8999999999
Q ss_pred CCceeEEEecccCc-eeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCC
Q 001184 576 EGALKRTYIGFRKK-SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQ 654 (1130)
Q Consensus 576 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg 654 (1130)
+......+...... .+.++.|+|.|+|||+++.||.|.|||.++-.. |.....|++++|.|+.+.+-.-...|
T Consensus 219 ~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~~g 292 (933)
T KOG1274|consen 219 GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITALG 292 (933)
T ss_pred CceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEeecc
Confidence 99888877654433 388899999999999999999999999998222 33344799999999988776666666
Q ss_pred cEEEE
Q 001184 655 GIKIL 659 (1130)
Q Consensus 655 ~i~iw 659 (1130)
...+|
T Consensus 293 ~~~~~ 297 (933)
T KOG1274|consen 293 TLGVS 297 (933)
T ss_pred ccccC
Confidence 55554
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.5e-25 Score=233.55 Aligned_cols=294 Identities=21% Similarity=0.284 Sum_probs=238.0
Q ss_pred CCCCEE---EEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCC
Q 001184 346 QGSSVV---SMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1130)
Q Consensus 346 h~~~V~---~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 422 (1130)
|...|. ++..++.+.++|++|+.||.|++|++.........+ -...+..|..+|..++...+|+
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~-------------~~asme~HsDWVNDiiL~~~~~ 86 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTP-------------YIASMEHHSDWVNDIILCGNGK 86 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccc-------------hhhhhhhhHhHHhhHHhhcCCC
Confidence 444555 556665444469999999999999987544321111 0114778999999999999999
Q ss_pred EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEE-ecCCCceEEEEEcCCCcEEEEe-cCC--Ceee-------
Q 001184 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAF-SYPNKQLCIVTCGDDKLIRVWD-LSG--RKLF------- 491 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~-s~d~~~l~l~s~s~d~~v~iwd-~~~--~~~~------- 491 (1130)
.|++++.|-+|++|+...+. .....++..|.+.|.|+++ .++.. ++||||-|+.|.+|| ..| +.+.
T Consensus 87 tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 87 TLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred ceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 99999999999999998874 1222367889999999999 66766 899999999999999 545 2222
Q ss_pred -Eec-CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEE
Q 001184 492 -QFE-GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHL 569 (1130)
Q Consensus 492 -~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1130)
.+. |+...|++++.++ .+..+++|+..+.+++||.++...+..+.+|...|..+..+.||+.+++++. ||+|
T Consensus 164 ~sl~sG~k~siYSLA~N~--t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----DgtI 237 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMNQ--TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGTI 237 (735)
T ss_pred ccCCCCCccceeeeecCC--cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----CceE
Confidence 233 8889999998754 5579999999999999999999999999999999999999999999999987 9999
Q ss_pred EEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEE
Q 001184 570 VEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVV 649 (1130)
Q Consensus 570 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~ 649 (1130)
++||+...+++.++..|.. .+.++..+|+-..+++|+.||.|+.=|+.+......+-...+ +|..+..+...+-+-+
T Consensus 238 rlWdLgqQrCl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~da--Pv~~l~~~~~~~~~Wv 314 (735)
T KOG0308|consen 238 RLWDLGQQRCLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDA--PVLKLHLHEHDNSVWV 314 (735)
T ss_pred EeeeccccceeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCC--chhhhhhccccCCcee
Confidence 9999999999999999888 599999999999999999999999999998543333332333 6777777765555678
Q ss_pred EeCCCcEEEEEcCCC
Q 001184 650 TTADQGIKILANADG 664 (1130)
Q Consensus 650 ~~~dg~i~iw~~~~~ 664 (1130)
++.|+.|+-|.....
T Consensus 315 tTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 315 TTTDSSIKRWKLEPD 329 (735)
T ss_pred eeccccceecCCccc
Confidence 889999999976543
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-24 Score=207.85 Aligned_cols=247 Identities=20% Similarity=0.313 Sum_probs=180.0
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCC-----ccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCC
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGS-----NDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK 478 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~-----~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~ 478 (1130)
++++|...|++++||.||++||+++.|++|++|+++.- ++++.... -+.-+.++|+||-+. +++++-...
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve----~dhpT~V~FapDc~s-~vv~~~~g~ 155 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE----YDHPTRVVFAPDCKS-VVVSVKRGN 155 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc----CCCceEEEECCCcce-EEEEEccCC
Confidence 68999999999999999999999999999999999752 22222211 234688999999986 677777788
Q ss_pred cEEEEec----CCCeeeEe---------cCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEE
Q 001184 479 LIRVWDL----SGRKLFQF---------EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCT 545 (1130)
Q Consensus 479 ~v~iwd~----~~~~~~~~---------~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~ 545 (1130)
++++|.. +|.....+ +.|.-.+..+-. .+++.+|++++.|..|.+|++. ++....+......-+
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi--A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~ 232 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI--AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNY 232 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEee--cCCceEEEEecCCCcEEEEecC-Cceeeeecccccccc
Confidence 9999972 33322211 235556666544 5677899999999999999998 677777777666777
Q ss_pred EEEEecCCCeEEEeeecCCCCcEEEEeeCC---CC-----ceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001184 546 TMLYSADGSRLFSCGTSKEGDSHLVEWNES---EG-----ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDM 617 (1130)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~---~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 617 (1130)
..+.+|+|+++++++. ...|.+|.+- .| ..+..+.||.. .|...+|+++..++++.+.||++++||.
T Consensus 233 ~aavSP~GRFia~~gF----TpDVkVwE~~f~kdG~fqev~rvf~LkGH~s-aV~~~aFsn~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 233 DAAVSPDGRFIAVSGF----TPDVKVWEPIFTKDGTFQEVKRVFSLKGHQS-AVLAAAFSNSSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred ceeeCCCCcEEEEecC----CCCceEEEEEeccCcchhhhhhhheeccchh-heeeeeeCCCcceeEEEecCCcEEEeec
Confidence 8899999999999987 5668999862 22 23456788766 8999999999999999999999999997
Q ss_pred CC----Cc---eeEEE--eccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 618 DN----VN---MLTST--EAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 618 ~~----~~---~~~~~--~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+- ++ .++.. ..+........++.+|+|..||... ...+.++..+++
T Consensus 308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g 362 (420)
T KOG2096|consen 308 DVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDG 362 (420)
T ss_pred cceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccC
Confidence 53 11 11111 1111111334677888887776553 446666665554
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-24 Score=216.11 Aligned_cols=282 Identities=17% Similarity=0.204 Sum_probs=242.8
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 426 (1130)
...+.++...|... .+.+|+.|..+.++|..+++.+. +++||...|+.+.|+|+...+++
T Consensus 219 ~pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~-------------------~~~Gh~kki~~v~~~~~~~~v~~ 278 (506)
T KOG0289|consen 219 TPGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILA-------------------TLKGHTKKITSVKFHKDLDTVIT 278 (506)
T ss_pred CCCeeEEeecCCCC-cceecCCCCceEEEecchhhhhh-------------------hccCcceEEEEEEeccchhheee
Confidence 34788888888744 58999999999999999888776 68999999999999999999999
Q ss_pred EeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecC--CCcCEEEE
Q 001184 427 AFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEG--HEAPVYSV 503 (1130)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~--h~~~v~~~ 503 (1130)
++.|..|+||......+.. ....|..+|+.+...|.|. ||++++.|++..+.| .+|..+..... ..-.+++.
T Consensus 279 aSad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~ 353 (506)
T KOG0289|consen 279 ASADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSA 353 (506)
T ss_pred cCCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEe
Confidence 9999999999998766443 5678999999999999999 899999999999999 88888766553 22357888
Q ss_pred eecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEE
Q 001184 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1130)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1130)
+||| ||.++.+|..|+.|++||+.+......|.+|..+|..++|+.+|-+|++++. |+.|++||++..+..+++
T Consensus 354 ~fHp--DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~ 427 (506)
T KOG0289|consen 354 AFHP--DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTI 427 (506)
T ss_pred eEcC--CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhccccee
Confidence 8975 5589999999999999999999999999999999999999999999999985 788999999998888888
Q ss_pred ecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--eeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 584 IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN--MLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
.......+..+.|.+.|.+++.++.|=.|++++-.+.+ .+..+..+ .+..+.+.|....+++++++.|..++++.+
T Consensus 428 ~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~--sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 428 QLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADH--SGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhc--ccccceeeecccceEEeeccchhheEEeec
Confidence 87666679999999999999999887777777755443 44444433 346789999999999999999999988754
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-25 Score=221.76 Aligned_cols=282 Identities=13% Similarity=0.195 Sum_probs=227.2
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCE
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 423 (1130)
-+|.++|.|+|=+|..-..+|+|+.||.|+|||+...++.. .+..|.+.|..++++. ..
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~-------------------~f~AH~G~V~Gi~v~~--~~ 121 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR-------------------TFKAHEGLVRGICVTQ--TS 121 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh-------------------eeecccCceeeEEecc--cc
Confidence 36999999999999873369999999999999999888775 5789999999999987 77
Q ss_pred EEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEE
Q 001184 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYS 502 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~ 502 (1130)
+++++.|++|+.|.+... .+ .++.+ ...+..|.-+..+. .++|||. .|.||| ....++..+.--...|.+
T Consensus 122 ~~tvgdDKtvK~wk~~~~-p~---~tilg-~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~s 192 (433)
T KOG0268|consen 122 FFTVGDDKTVKQWKIDGP-PL---HTILG-KSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWGADSISS 192 (433)
T ss_pred eEEecCCcceeeeeccCC-cc---eeeec-cccccccccccccc--cccccCc--eeeecccccCCccceeecCCCceeE
Confidence 889999999999998873 22 23432 44567777766666 7889886 489999 778888888877788999
Q ss_pred EeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCC-ceeE
Q 001184 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG-ALKR 581 (1130)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~ 581 (1130)
+.|+|... .+|++++.|+.|.+||++.......... +...+.++|+|.+-.++++. +|..++.+|++.- .++.
T Consensus 193 vkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~----ED~nlY~~DmR~l~~p~~ 266 (433)
T KOG0268|consen 193 VKFNPVET-SILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAAN----EDHNLYTYDMRNLSRPLN 266 (433)
T ss_pred EecCCCcc-hheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeecc----ccccceehhhhhhcccch
Confidence 99988654 6888999999999999998877664432 23457899999666666664 4899999998764 4566
Q ss_pred EEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 582 TYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 582 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
.+.+|.. .|..+.|+|.|+-+++|+.|.+|+||..+.+.--...- ......|.++.||-|.+++++|++|+.|++|..
T Consensus 267 v~~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYh-tkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 267 VHKDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYH-TKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred hhcccce-eEEEeccCCCcchhccccccceEEEeecCCCcchhhhh-HhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 6777655 89999999999999999999999999998765322221 122336899999999999999999999999986
Q ss_pred CC
Q 001184 662 AD 663 (1130)
Q Consensus 662 ~~ 663 (1130)
..
T Consensus 345 ~A 346 (433)
T KOG0268|consen 345 KA 346 (433)
T ss_pred ch
Confidence 54
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=205.15 Aligned_cols=268 Identities=18% Similarity=0.276 Sum_probs=214.4
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
-.+.|+.+.|+|.+.. |++++-||++++||+...+... .-.|..++.+++|-+ ...++
T Consensus 12 P~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~ 69 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIV 69 (323)
T ss_pred ChhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEE
Confidence 3578999999999986 5556699999999998765432 236788999999997 45788
Q ss_pred EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecC-CCeeeEecCCCcCEEEEe
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS-GRKLFQFEGHEAPVYSVC 504 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~-~~~~~~~~~h~~~v~~~~ 504 (1130)
+|+.||.|+.+|+.++.... +..|..+|.+|.+++... .+++||.|++|++||.. ......+. ....|.++.
T Consensus 70 ~G~~dg~vr~~Dln~~~~~~----igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~ 142 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNEDQ----IGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMD 142 (323)
T ss_pred EeccCceEEEEEecCCccee----eccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEe
Confidence 99999999999999987553 778999999999998777 79999999999999944 33344443 445888886
Q ss_pred ecccCCccEEEEEecCCcEEEEEccCCcceeeecC--CCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCC----c
Q 001184 505 PHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA--PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG----A 578 (1130)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~----~ 578 (1130)
. .++.|+.|+.|..+.+||+++......... -...+.++++-|++.-.++++. +|.|.+=..... .
T Consensus 143 v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi----eGRVavE~~d~s~~~~s 214 (323)
T KOG1036|consen 143 V----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI----EGRVAVEYFDDSEEAQS 214 (323)
T ss_pred c----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee----cceEEEEccCCchHHhh
Confidence 5 346899999999999999998776653322 2337899999998888888776 788877555444 3
Q ss_pred eeEEEecccCc--------eeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEE
Q 001184 579 LKRTYIGFRKK--------SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVT 650 (1130)
Q Consensus 579 ~~~~~~~~~~~--------~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~ 650 (1130)
....|+.|... +|++++|+|-.+.+++|+.||.|.+||+.+.+.+..+.... ..|..++|+.+|..||++
T Consensus 215 kkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~--~SI~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 215 KKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYE--TSISSLSFSMDGSLLAIA 292 (323)
T ss_pred hceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCC--CceEEEEeccCCCeEEEE
Confidence 34456665432 68889999999999999999999999999999888876553 369999999999999999
Q ss_pred eC
Q 001184 651 TA 652 (1130)
Q Consensus 651 ~~ 652 (1130)
+.
T Consensus 293 ~s 294 (323)
T KOG1036|consen 293 SS 294 (323)
T ss_pred ec
Confidence 75
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-25 Score=225.00 Aligned_cols=292 Identities=15% Similarity=0.217 Sum_probs=234.6
Q ss_pred ceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEc
Q 001184 339 AVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1130)
Q Consensus 339 ~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 418 (1130)
+.++++.|++-|.++++|...++ +++|+ .|-|+|||+....... ++. +.. .-....-|.++.++
T Consensus 411 rq~~tL~HGEvVcAvtIS~~trh-VyTgG-kgcVKVWdis~pg~k~--Pvs-----------qLd-cl~rdnyiRSckL~ 474 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPTRH-VYTGG-KGCVKVWDISQPGNKS--PVS-----------QLD-CLNRDNYIRSCKLL 474 (705)
T ss_pred HhhhhhccCcEEEEEEecCCcce-eEecC-CCeEEEeeccCCCCCC--ccc-----------ccc-ccCcccceeeeEec
Confidence 45667889999999999999986 88887 5689999997542211 111 111 11335679999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCC
Q 001184 419 PDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHE 497 (1130)
Q Consensus 419 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~ 497 (1130)
|||+.|++|+.-.++.|||+.+... +....+....-..++++.+||.+ ++++|..||.|.||| .+...++.|.||.
T Consensus 475 pdgrtLivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCC
Confidence 9999999999999999999987542 22233444445678899999999 899999999999999 7778889999999
Q ss_pred cCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCC
Q 001184 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577 (1130)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1130)
+.+.|+.++ .+|..|.+|+.|++||.||++.+........ ...|.++.++|.+.+++++-. ++.+.+......
T Consensus 552 DGascIdis--~dGtklWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~dWlavGMe----ns~vevlh~skp 624 (705)
T KOG0639|consen 552 DGASCIDIS--KDGTKLWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGDWLAVGME----NSNVEVLHTSKP 624 (705)
T ss_pred CCceeEEec--CCCceeecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCccceeeecc----cCcEEEEecCCc
Confidence 999999884 5678999999999999999998887765543 346899999999999999975 677777764432
Q ss_pred ceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 001184 578 ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIK 657 (1130)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~ 657 (1130)
....+.. +...|.++.|.+.|+++++.+.|+.+..|.+.-|..+...+.. ..|.++.+|.|.+++++|+.|..-.
T Consensus 625 -~kyqlhl-heScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~---SsVlsCDIS~ddkyIVTGSGdkkAT 699 (705)
T KOG0639|consen 625 -EKYQLHL-HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISFDDKYIVTGSGDKKAT 699 (705)
T ss_pred -cceeecc-cccEEEEEEecccCceeeecCchhhhhhccCccccceeecccc---CcceeeeeccCceEEEecCCCcceE
Confidence 2333333 4458999999999999999999999999999999877666543 3799999999999999999999888
Q ss_pred EEEc
Q 001184 658 ILAN 661 (1130)
Q Consensus 658 iw~~ 661 (1130)
+|.+
T Consensus 700 VYeV 703 (705)
T KOG0639|consen 700 VYEV 703 (705)
T ss_pred EEEE
Confidence 8865
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-23 Score=212.26 Aligned_cols=240 Identities=17% Similarity=0.294 Sum_probs=197.4
Q ss_pred CccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCC
Q 001184 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1130)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1130)
|.-.|+.+.++++...+++++.|..|++|........ .....|..+|+.+...|.|
T Consensus 260 h~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~------------------------~~~~~h~~~V~~ls~h~tg 315 (506)
T KOG0289|consen 260 HTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP------------------------TSSRPHEEPVTGLSLHPTG 315 (506)
T ss_pred cceEEEEEEeccchhheeecCCcceEEeeccccccCc------------------------cccccccccceeeeeccCC
Confidence 6677888999999999999999999999975432210 0112589999999999999
Q ss_pred CEEEEEe-CCeEEEEECCCceeEEEEeCC--CCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeE
Q 001184 846 SYVMSAG-GGKVSLFNMMNFKVMTTFMSP--PPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITG 922 (1130)
Q Consensus 846 ~~la~~~-dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 922 (1130)
.||++++ |+.+.+.|+.++.++...... .-.+++.+|+| ||.++++|..||.|+|||+.++..+..|.+|+++|..
T Consensus 316 eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~ 394 (506)
T KOG0289|consen 316 EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKA 394 (506)
T ss_pred cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeE
Confidence 9999999 799999999999988776642 34589999999 9999999999999999999999999999999999999
Q ss_pred EEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-cCCcEEEEECC--Cceee
Q 001184 923 LAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGS--KMECI 999 (1130)
Q Consensus 923 l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~--~~~~~ 999 (1130)
++|+.+|.||++++.|+.|++||+..-+....... ... -++.++.|.+.|.+|+.+ .+=.|++++-. ....+
T Consensus 395 i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l--~~~---~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~ 469 (506)
T KOG0289|consen 395 ISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL--DEK---KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEI 469 (506)
T ss_pred EEeccCceEEEEEecCCeEEEEEehhhcccceeec--ccc---ccceeEEEcCCCCeEEeecceeEEEEEecccccceee
Confidence 99999999999999999999999998553333222 221 368999999999999985 44445555432 45556
Q ss_pred eeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeC
Q 001184 1000 RQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDA 1038 (1130)
Q Consensus 1000 ~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~ 1038 (1130)
..+..+ .+..+.+.|..+.+++++++.|..++++-+
T Consensus 470 ~~~~~~---sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 470 KELADH---SGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ehhhhc---ccccceeeecccceEEeeccchhheEEeec
Confidence 655544 678999999999999999999999988754
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=203.05 Aligned_cols=249 Identities=16% Similarity=0.195 Sum_probs=195.0
Q ss_pred ecCCCccEEEEEEcC-CCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 405 VKDSSISVSRVAWSP-DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 405 ~~~h~~~V~~v~~sp-dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
-...+..|.+++||| ...+++.++.|++||+|+++....+.. +....|.++|.+++|+.||. .+++|+.|+.+++|
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLW 99 (347)
T ss_pred CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEE
Confidence 345678999999999 556777899999999999987422222 34677999999999999998 79999999999999
Q ss_pred e-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeec
Q 001184 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
| .++ .+..+..|.++|..+.|.+......|++||.|.+|+.||.+.......+..++. ++++..- ..+++++..
T Consensus 100 DL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR-vYa~Dv~--~pm~vVata- 174 (347)
T KOG0647|consen 100 DLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER-VYAADVL--YPMAVVATA- 174 (347)
T ss_pred EccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce-eeehhcc--CceeEEEec-
Confidence 9 555 677788899999999998877777999999999999999998888887766543 4444332 335555543
Q ss_pred CCCCcEEEEeeCCCCcee-EEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--ceeEEEeccCC-------C
Q 001184 563 KEGDSHLVEWNESEGALK-RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV--NMLTSTEAEGG-------L 632 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~-------~ 632 (1130)
+..|.+|+++.+... +.....-...++|++..++....+.|+-+|.+-|..++.+ +.-.+++.|.. .
T Consensus 175 ---~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~V 251 (347)
T KOG0647|consen 175 ---ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDV 251 (347)
T ss_pred ---CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCce
Confidence 888999999766433 2333333446889999999888899999999999998876 33334444432 3
Q ss_pred CCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 633 PSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 633 ~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
-.|++++|+|....|++++.||++.+||-+..
T Consensus 252 YaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 252 YAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred EEecceEeecccceEEEecCCceEEEecchhh
Confidence 35788999999999999999999999996544
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-23 Score=203.47 Aligned_cols=243 Identities=19% Similarity=0.256 Sum_probs=204.5
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
.+..|.+.|+++|.+ |.++|+|+.|-+|+|||+.....+. .+-.|.+.|+++.|.++-..-.|++|+.||.|.+|
T Consensus 38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 467899999999995 8999999999999999999877665 56779999999999987642258999999999999
Q ss_pred e-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeec
Q 001184 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
+ ..-.++..+++|.+.|+.++++|++ ++-++.+.|+.++.||+-.++.-........ .+.+.|+|.|.+++..+
T Consensus 113 ~~~~W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-at~v~w~~~Gd~F~v~~-- 187 (362)
T KOG0294|consen 113 RVGSWELLKSLKAHKGQVTDLSIHPSG--KLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-ATLVSWSPQGDHFVVSG-- 187 (362)
T ss_pred EcCCeEEeeeecccccccceeEecCCC--ceEEEEcCCceeeeehhhcCccceeeccCCc-ceeeEEcCCCCEEEEEe--
Confidence 9 7778999999999999999998866 7888999999999999988877665554433 34599999999988887
Q ss_pred CCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEE--
Q 001184 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRF-- 640 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~-- 640 (1130)
...|-+|.+.+..+...+... ..+.++.|. ++..+++|++|+.|.+||.+...+...+..|.. .|.++.+
T Consensus 188 ---~~~i~i~q~d~A~v~~~i~~~--~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~--RVK~i~~~~ 259 (362)
T KOG0294|consen 188 ---RNKIDIYQLDNASVFREIENP--KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN--RVKDIASYT 259 (362)
T ss_pred ---ccEEEEEecccHhHhhhhhcc--ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchh--heeeeEEEe
Confidence 678999999887776666543 245566665 567899999999999999999888888877655 7888774
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 641 NKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 641 s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
.|++.+|++++.||.|++||++..
T Consensus 260 ~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 260 NPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cCCceEEEEeccCceEEEEEcccc
Confidence 567899999999999999998765
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-24 Score=202.99 Aligned_cols=252 Identities=20% Similarity=0.303 Sum_probs=208.6
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEec--CCCceEEEEEcCCCcEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY--PNKQLCIVTCGDDKLIR 481 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~--d~~~l~l~s~s~d~~v~ 481 (1130)
+...|+..|..+...--|++||+|+.|++|+|+.+..........++.||.++|+.++|.. -|. +|++++.||.|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI 83 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence 5678999999999988999999999999999999998776667778999999999999987 677 899999999999
Q ss_pred EEe-cCCC--eeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCc---ceeeecCCCccEEEEEEecC---
Q 001184 482 VWD-LSGR--KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG---SRVDYDAPGLWCTTMLYSAD--- 552 (1130)
Q Consensus 482 iwd-~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~s~~--- 552 (1130)
||. ..|+ ....+..|...|++++|.|..-|-.|++++.||.|.+.+++... .......|.-.|++++|.|.
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 999 5553 34566789999999999999999999999999999999988762 22345667778999999986
Q ss_pred C-----------CeEEEeeecCCCCcEEEEeeCCCCc--eeEEEecccCceeEEEEEcCCC----CEEEEEeCCCcEEEE
Q 001184 553 G-----------SRLFSCGTSKEGDSHLVEWNESEGA--LKRTYIGFRKKSAGVVQFDTTR----NRILAAGEDNQIKFW 615 (1130)
Q Consensus 553 ~-----------~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~vw 615 (1130)
| +.|++++. |..|.+|+...+. ..+++.+|.+ -++.++|.|.- .+|++++.||++.||
T Consensus 164 g~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~iAS~SqDg~viIw 238 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGLPKSTIASCSQDGTVIIW 238 (299)
T ss_pred ccccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCCCceeeEEecCCCcEEEE
Confidence 5 56899987 9999999987753 3456788777 89999999975 379999999999999
Q ss_pred eCCCC-ceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001184 616 DMDNV-NMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANA 662 (1130)
Q Consensus 616 d~~~~-~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~ 662 (1130)
..+.. +.-...-.+.-...+..+.||..|+.|++++.|+.+.+|.-.
T Consensus 239 t~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 239 TKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 87632 111111122233468999999999999999999999999743
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.8e-25 Score=216.85 Aligned_cols=241 Identities=16% Similarity=0.266 Sum_probs=197.6
Q ss_pred ecCCCccEEEEEEcCCC-CEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 405 VKDSSISVSRVAWSPDG-NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 405 ~~~h~~~V~~v~~spdg-~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
+.||...|.|++=+|.. ..+|+|+.||.|++||+....++. ++..|.+.|..|++.. . .++++|.|++|+.|
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~---~f~AH~G~V~Gi~v~~--~--~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR---TFKAHEGLVRGICVTQ--T--SFFTVGDDKTVKQW 134 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh---eeecccCceeeEEecc--c--ceEEecCCcceeee
Confidence 57999999999999987 789999999999999999987776 7899999999999987 3 58999999999999
Q ss_pred ecCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecC
Q 001184 484 DLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1130)
Q Consensus 484 d~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1130)
-..+..++++.+. ..+..+.-+. .+..++|+|. .|.|||.....+...+......|.++.|+|-...++.++.
T Consensus 135 k~~~~p~~tilg~-s~~~gIdh~~--~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~-- 207 (433)
T KOG0268|consen 135 KIDGPPLHTILGK-SVYLGIDHHR--KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCA-- 207 (433)
T ss_pred eccCCcceeeecc-cccccccccc--ccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeec--
Confidence 9888777777643 3445554332 2356777764 5889999988888888888888999999998776655442
Q ss_pred CCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-eeEEEeccCCCCCcceEEEcC
Q 001184 564 EGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN-MLTSTEAEGGLPSLPRLRFNK 642 (1130)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~i~~v~~s~ 642 (1130)
.|+.|.+||++++.+++.+.-. ...+.++|+|.+--+++|++|..++.||++... ++.....| ...|.++.|||
T Consensus 208 -sDrsIvLyD~R~~~Pl~KVi~~--mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh--vsAV~dVdfsp 282 (433)
T KOG0268|consen 208 -SDRSIVLYDLRQASPLKKVILT--MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH--VSAVMDVDFSP 282 (433)
T ss_pred -cCCceEEEecccCCccceeeee--ccccceecCccccceeeccccccceehhhhhhcccchhhccc--ceeEEEeccCC
Confidence 2899999999999988776532 245679999977778889999999999998754 44445444 44899999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCC
Q 001184 643 EGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
.|+-+++|+.|.+|+||....+
T Consensus 283 tG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 283 TGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred CcchhccccccceEEEeecCCC
Confidence 9999999999999999998765
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=204.50 Aligned_cols=333 Identities=14% Similarity=0.231 Sum_probs=245.3
Q ss_pred ceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 001184 578 ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIK 657 (1130)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~ 657 (1130)
++++.+.||.+ .|..++.....+.+.+++.|.+-+||.++++.++.++.+|.+ .|+++.|++.+.++++++.|++-.
T Consensus 139 ~lvre~~GHkD-GiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~G--SVNsikfh~s~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 139 RLVRELEGHKD-GIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTG--SVNSIKFHNSGLLLLTASGDETAH 215 (481)
T ss_pred eehhhhccccc-ceeeehhhcCCcceeecccccceeEEeeccccceeeeccccc--ceeeEEeccccceEEEccCCcchH
Confidence 34567788777 677777777777888999999999999999999999987765 899999999999999999999999
Q ss_pred EEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCccccccc
Q 001184 658 ILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDI 737 (1130)
Q Consensus 658 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1130)
||...-+.+.... ..|. . ..+.+... ..
T Consensus 216 IW~~av~~~vP~~-------------------------~a~~----------------~-hSsEeE~e----------~s 243 (481)
T KOG0300|consen 216 IWKAAVNWEVPSN-------------------------NAPS----------------D-HSSEEEEE----------HS 243 (481)
T ss_pred HHHHhhcCcCCCC-------------------------CCCC----------------C-CCchhhhh----------cc
Confidence 9975332111100 0000 0 00000000 00
Q ss_pred CCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCccccccccccccc
Q 001184 738 SDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQ 817 (1130)
Q Consensus 738 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~ 817 (1130)
|. +. +-..-....|| .+|++-
T Consensus 244 De--------------------------~~-~d~d~~~~sD~---------~tiRvP----------------------- 264 (481)
T KOG0300|consen 244 DE--------------------------HN-RDTDSSEKSDG---------HTIRVP----------------------- 264 (481)
T ss_pred cc--------------------------cc-cccccccccCC---------ceeeee-----------------------
Confidence 00 00 00000000011 111110
Q ss_pred CCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCC
Q 001184 818 PSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED 896 (1130)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~d 896 (1130)
. .-..+|...|.+..|-..|+.+++++ |.+-.+||+++++.+..+.+|....+.++-+| ..+++++++.|
T Consensus 265 -------l-~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrD 335 (481)
T KOG0300|consen 265 -------L-MRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRD 335 (481)
T ss_pred -------e-eeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccC
Confidence 0 01126899999999999999999999 99999999999999999999999999999999 89999999999
Q ss_pred CcEEEEEeecC-eEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcC
Q 001184 897 STIQIYNVRVD-EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHS 975 (1130)
Q Consensus 897 g~v~iwd~~~~-~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 975 (1130)
.+.++||+... ..+..|+||.+.|+++.|..| ..+++++.|.+|++||+.+-... +.......++..++.+.
T Consensus 336 tTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsp------lATIRtdS~~NRvavs~ 408 (481)
T KOG0300|consen 336 TTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSP------LATIRTDSPANRVAVSK 408 (481)
T ss_pred ceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCc------ceeeecCCccceeEeec
Confidence 99999999843 567889999999999999876 57899999999999999874321 11122336788999999
Q ss_pred CCcEEEEE-cCCcEEEEECCCceeeeeee--cCCCCCCCeEEEEECCCCC--EEEEEeCCCcEEEEeCCCc
Q 001184 976 DQVRLLVN-HETQLAIYDGSKMECIRQWV--PQDVLSSPISSAAYSCNSQ--LIYATFTDGSIGVFDADSL 1041 (1130)
Q Consensus 976 d~~~l~~~-~d~~i~v~d~~~~~~~~~~~--~~~~~~~~v~~v~~s~dg~--~l~t~~~Dg~i~vwd~~~~ 1041 (1130)
.+..++.- +++.|++||+..... ..+. ...+|..-|+|++|+.+.. -|++++-|..+.=|.+..-
T Consensus 409 g~~iIAiPhDNRqvRlfDlnG~Rl-aRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 409 GHPIIAIPHDNRQVRLFDLNGNRL-ARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred CCceEEeccCCceEEEEecCCCcc-ccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 99899885 567899999985444 3333 2345688999999987654 6888899999999998643
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.7e-23 Score=232.07 Aligned_cols=227 Identities=15% Similarity=0.222 Sum_probs=182.0
Q ss_pred EeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecC-CCceEEEEEcCCCcEEEEe-cCCC--------eeeEecCC
Q 001184 427 AFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP-NKQLCIVTCGDDKLIRVWD-LSGR--------KLFQFEGH 496 (1130)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d-~~~l~l~s~s~d~~v~iwd-~~~~--------~~~~~~~h 496 (1130)
|+.++.|++|+..... ....+.+|.+.|.+++|+|+ +. +|++|+.|++|+||| .++. ++..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~---~v~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP---PVIKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCc---eEEEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 6678899999987643 33468899999999999997 56 899999999999999 4332 34567899
Q ss_pred CcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC
Q 001184 497 EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE 576 (1130)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1130)
...|.+++|+|... .++++++.|++|++||+++......+. +...|.+++|+|+|.+|++++. ++.|++||+++
T Consensus 125 ~~~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence 99999999987542 456899999999999999888766665 4567999999999999998875 88999999999
Q ss_pred CceeEEEecccCce----eEEEEEcCCCCEEEEEeCCC----cEEEEeCCC-CceeEEEeccCCCCCcceEEEcCCCCEE
Q 001184 577 GALKRTYIGFRKKS----AGVVQFDTTRNRILAAGEDN----QIKFWDMDN-VNMLTSTEAEGGLPSLPRLRFNKEGNLL 647 (1130)
Q Consensus 577 ~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg----~i~vwd~~~-~~~~~~~~~~~~~~~i~~v~~s~~~~~l 647 (1130)
++.+..+.+|.+.. +....|+++++++++++.|+ .|++||+++ ++++.....+.....+......+++.++
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 99999999887532 22234568889999988774 799999985 6677766665544344444445678999
Q ss_pred EEEeCCCcEEEEEcCCC
Q 001184 648 VVTTADQGIKILANADG 664 (1130)
Q Consensus 648 ~~~~~dg~i~iw~~~~~ 664 (1130)
++|+.|+.|++|++..+
T Consensus 279 lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEEECCCeEEEEEccCC
Confidence 99999999999999765
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=215.65 Aligned_cols=264 Identities=16% Similarity=0.244 Sum_probs=211.7
Q ss_pred ceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEc
Q 001184 339 AVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1130)
Q Consensus 339 ~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 418 (1130)
+....+.|.++|+.+.+-|....++|+++..+.|.|||+.+..-.... .+...+...+.+|...=.+++|+
T Consensus 116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~---------~~~~~Pdl~L~gH~~eg~glsWn 186 (422)
T KOG0264|consen 116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA---------SGECRPDLRLKGHEKEGYGLSWN 186 (422)
T ss_pred EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc---------cccCCCceEEEeecccccccccc
Confidence 344456799999999999999989999999999999999764332210 00112333688999888889999
Q ss_pred CCCC-EEEEEeCCCeEEEEEecCCcc----ceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-c--CCCee
Q 001184 419 PDGN-FIGVAFTKHLIHLYTYQGSND----LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-L--SGRKL 490 (1130)
Q Consensus 419 pdg~-~las~~~d~~i~vwd~~~~~~----~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~--~~~~~ 490 (1130)
+... +|++++.|++|++||+..... +.....+.+|...|.+++|++-... ++++++.|+.+.||| . +.++.
T Consensus 187 ~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~ 265 (422)
T KOG0264|consen 187 RQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPS 265 (422)
T ss_pred cccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCc
Confidence 9644 889999999999999976443 5566678999999999999997776 799999999999999 5 55666
Q ss_pred eEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcc-eeeecCCCccEEEEEEecCCCeE-EEeeecCCCCcE
Q 001184 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS-RVDYDAPGLWCTTMLYSADGSRL-FSCGTSKEGDSH 568 (1130)
Q Consensus 491 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l-~~~~~~~~~~~~ 568 (1130)
....+|+++|+|++|+|.. +.+|++||.|++|++||+++... ...+..|...|..+.|+|....+ ++.+. |+.
T Consensus 266 ~~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~----D~r 340 (422)
T KOG0264|consen 266 HSVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT----DRR 340 (422)
T ss_pred ccccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc----CCc
Confidence 7788999999999999865 58999999999999999998665 45888999999999999976654 45544 999
Q ss_pred EEEeeCCCC--------------ceeEEEecccCceeEEEEEcCCCCE-EEEEeCCCcEEEEeCC
Q 001184 569 LVEWNESEG--------------ALKRTYIGFRKKSAGVVQFDTTRNR-ILAAGEDNQIKFWDMD 618 (1130)
Q Consensus 569 i~~wd~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~vwd~~ 618 (1130)
+.+||+..- +++..-.||.. .|..+.|+|...+ |+++++|+.+.||.+.
T Consensus 341 l~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 341 LNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred EEEEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 999998542 12234445544 7888999998875 5668999999999986
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8e-24 Score=198.62 Aligned_cols=252 Identities=19% Similarity=0.285 Sum_probs=203.6
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC--CCC
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP--DGN 422 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~ 422 (1130)
.|++-|..+...--|++ ||+++.|++|+|+.+.+..... ....+.||+++|..++|-. -|.
T Consensus 9 ~H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G~ 71 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFGT 71 (299)
T ss_pred hhhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccCc
Confidence 48999999999989986 9999999999999998765321 1226889999999999986 799
Q ss_pred EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCe--eeEecCCCc
Q 001184 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRK--LFQFEGHEA 498 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~--~~~~~~h~~ 498 (1130)
+||+++.||.|.||.-++| ...+......|...|++++|.|.+-.+.|+.++.||.|.|.+ .+|.- .+....|.-
T Consensus 72 iLAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~ 150 (299)
T KOG1332|consen 72 ILASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI 150 (299)
T ss_pred EeeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc
Confidence 9999999999999999888 455566778999999999999998888999999999999998 33222 244568999
Q ss_pred CEEEEeecccCCc------------cEEEEEecCCcEEEEEccCCcce--eeecCCCccEEEEEEecCC----CeEEEee
Q 001184 499 PVYSVCPHQKENI------------HFIFSTAVDGKIKAWLYDNVGSR--VDYDAPGLWCTTMLYSADG----SRLFSCG 560 (1130)
Q Consensus 499 ~v~~~~~~~~~~~------------~~l~s~s~dg~i~vwd~~~~~~~--~~~~~~~~~v~~~~~s~~~----~~l~~~~ 560 (1130)
.|++++|.|..-. ..|++|+.|..|+||+.++.+-. ..+..|...|+.++|.|.- .+|++++
T Consensus 151 GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S 230 (299)
T KOG1332|consen 151 GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS 230 (299)
T ss_pred ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec
Confidence 9999999876221 56999999999999999876322 2478899999999999965 4688887
Q ss_pred ecCCCCcEEEEeeCCCC--ceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001184 561 TSKEGDSHLVEWNESEG--ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMD 618 (1130)
Q Consensus 561 ~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 618 (1130)
. |+++.||..... .-..++...-...+..+.|+..|+.|+.++.|+.+.+|.-.
T Consensus 231 q----Dg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 231 Q----DGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred C----CCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 5 999999986522 11122221123368899999999999999999999999754
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.7e-23 Score=200.37 Aligned_cols=298 Identities=13% Similarity=0.194 Sum_probs=222.2
Q ss_pred CcccceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEE
Q 001184 335 DLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSR 414 (1130)
Q Consensus 335 ~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 414 (1130)
+.|.++..++.|.. ..|+.|++.|. +||+|+.||.|.|||+.|-..-+ ++.+|-.+|+|
T Consensus 12 ~~PEel~~tld~~~-a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar-------------------~lsaH~~pi~s 70 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL-AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIAR-------------------MLSAHVRPITS 70 (405)
T ss_pred cChHhhceeccCCc-cceEEeccCcc-eeeeeccCCcEEEEEccccchhh-------------------hhhccccceeE
Confidence 45666777787766 89999999998 69999999999999998866443 68899999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEec
Q 001184 415 VAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE 494 (1130)
Q Consensus 415 v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~ 494 (1130)
++||+||+.|++++.|..|.+||+..|.++++. ....+|+.+.|.|..++..++ +-.+..-.+-+.+...-..+.
T Consensus 71 l~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va-~~~~~sp~vi~~s~~~h~~Lp 145 (405)
T KOG1273|consen 71 LCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVA-TIMEESPVVIDFSDPKHSVLP 145 (405)
T ss_pred EEecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEE-EEecCCcEEEEecCCceeecc
Confidence 999999999999999999999999999876632 246789999999987763343 333333444442221111111
Q ss_pred -CCCcCEEEEe--ecccCCccEEEEEecCCcEEEEEccCCcceeeecCCC-ccEEEEEEecCCCeEEEeeecCCCCcEEE
Q 001184 495 -GHEAPVYSVC--PHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG-LWCTTMLYSADGSRLFSCGTSKEGDSHLV 570 (1130)
Q Consensus 495 -~h~~~v~~~~--~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1130)
...+..+..+ -..+..|+++++|...|.+.++|.++.+++..+.... ..|..+.++..|+.|+..+. |..|+
T Consensus 146 ~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRvIR 221 (405)
T KOG1273|consen 146 KDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRVIR 221 (405)
T ss_pred CCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----CceEE
Confidence 1111111111 1235667899999999999999999998887666555 67999999999999999876 99999
Q ss_pred EeeCCCC-------cee--EEEec-ccCceeEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCceeEEEeccCCCCCcceEE
Q 001184 571 EWNESEG-------ALK--RTYIG-FRKKSAGVVQFDTTRNRILAAGE-DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLR 639 (1130)
Q Consensus 571 ~wd~~~~-------~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~ 639 (1130)
.|+++.- .+. +.+.. -......+++|+.+|.++++++. ...++||....|.+++.+.+..+. ....+.
T Consensus 222 ~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE-~l~DV~ 300 (405)
T KOG1273|consen 222 TYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE-ELLDVN 300 (405)
T ss_pred EEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchh-heeecc
Confidence 9997621 111 11110 01124557899999999888763 467999999999999999876543 577899
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 640 FNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 640 ~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
|+|-...+++- ..|.+++|.....
T Consensus 301 whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 301 WHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred cccceeeeeec-cCCceEEEEeecc
Confidence 99988877777 7899999987543
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.9e-21 Score=210.78 Aligned_cols=567 Identities=13% Similarity=0.126 Sum_probs=328.9
Q ss_pred EEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCC---EEEEEe
Q 001184 352 SMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN---FIGVAF 428 (1130)
Q Consensus 352 ~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~---~las~~ 428 (1130)
.-.||+|+++++.. .+..|.||...+|+++. .+.+|...+..+.+.|... ++.+++
T Consensus 21 ~avfSnD~k~l~~~--~~~~V~VyS~~Tg~~i~-------------------~l~~~~a~l~s~~~~~~~~~~~~~~~~s 79 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLC--TGNFVKVYSTATGECIT-------------------SLEDHTAPLTSVIVLPSSENANYLIVCS 79 (792)
T ss_pred ccccccCCcEEEEe--eCCEEEEEecchHhhhh-------------------hcccccCccceeeecCCCccceEEEEEe
Confidence 34799999964443 35699999999999986 5889999999999988644 677999
Q ss_pred CCCeEEEEEecCCccceeeeeeecCCCCeeEEEEec----CCCceEEEEEcCCCcEE----------E--Ee---cCCCe
Q 001184 429 TKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY----PNKQLCIVTCGDDKLIR----------V--WD---LSGRK 489 (1130)
Q Consensus 429 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~----d~~~l~l~s~s~d~~v~----------i--wd---~~~~~ 489 (1130)
.||.|++||...+..++ ++.. ..++.++.+.| ... .+..+..|..+. . +. .....
T Consensus 80 l~G~I~vwd~~~~~Llk---t~~~-~~~v~~~~~~~~~a~~s~--~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~ 153 (792)
T KOG1963|consen 80 LDGTIRVWDWSDGELLK---TFDN-NLPVHALVYKPAQADISA--NVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAK 153 (792)
T ss_pred cCccEEEecCCCcEEEE---EEec-CCceeEEEechhHhCccc--eeEeecccceeeeecccccccceeeeEeeeccccc
Confidence 99999999999987665 2322 22344443322 111 111121221111 1 11 00011
Q ss_pred eeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCccee----eecCCCccEEEEEEecCCCeEEEeeecCCC
Q 001184 490 LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV----DYDAPGLWCTTMLYSADGSRLFSCGTSKEG 565 (1130)
Q Consensus 490 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1130)
...+.+|.. -.++.+.+.. .+.....+..+.+|+........ .-..|...+++.+++|.+++++++-.
T Consensus 154 ~d~~~~~~~-~~~I~~~~~g---e~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~---- 225 (792)
T KOG1963|consen 154 GDFLKEHQE-PKSIVDNNSG---EFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDS---- 225 (792)
T ss_pred hhhhhhhcC-CccEEEcCCc---eEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEecc----
Confidence 111222322 2344443333 33444456678888887654221 11223445799999999999999865
Q ss_pred CcEEEEeeCCC--C--ceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEc
Q 001184 566 DSHLVEWNESE--G--ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN 641 (1130)
Q Consensus 566 ~~~i~~wd~~~--~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s 641 (1130)
+|+|.+|.--. + .....+.=|++ .|.+++|+++|.+|++||..|.+-+|.+.+++ .+-++.-+. +|..+.++
T Consensus 226 dGrI~vw~d~~~~~~~~t~t~lHWH~~-~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs--~I~~i~vS 301 (792)
T KOG1963|consen 226 DGRILVWRDFGSSDDSETCTLLHWHHD-EVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGS--PILHIVVS 301 (792)
T ss_pred CCcEEEEeccccccccccceEEEeccc-ccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCC--eeEEEEEc
Confidence 89999997432 1 12344555555 89999999999999999999999999999988 333333333 79999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCC
Q 001184 642 KEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGA 721 (1130)
Q Consensus 642 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~ 721 (1130)
||+.+.+....|+.|.+....+. .....+.+.... .|+
T Consensus 302 ~ds~~~sl~~~DNqI~li~~~dl-~~k~tIsgi~~~-------------------~~~---------------------- 339 (792)
T KOG1963|consen 302 PDSDLYSLVLEDNQIHLIKASDL-EIKSTISGIKPP-------------------TPS---------------------- 339 (792)
T ss_pred CCCCeEEEEecCceEEEEeccch-hhhhhccCccCC-------------------Ccc----------------------
Confidence 99999999999999999887554 333333221110 000
Q ss_pred CccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCC
Q 001184 722 DSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQ 801 (1130)
Q Consensus 722 ~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 801 (1130)
. .....+-.+.++++|.-+.++..+..|.+++||+..
T Consensus 340 -----------------~-----------------------k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~t--- 376 (792)
T KOG1963|consen 340 -----------------T-----------------------KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYT--- 376 (792)
T ss_pred -----------------c-----------------------cccccccceeEEEcCCCCceeecCCCceEEEEeccc---
Confidence 0 000122233445555444455555555665555322
Q ss_pred CCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeEEEE
Q 001184 802 NPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLA 881 (1130)
Q Consensus 802 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~ 881 (1130)
...+..+....... .+|.+ .+.-.+++++
T Consensus 377 -------------------------------d~~i~~~~v~~~n~-----~~~~~---------------n~~v~itav~ 405 (792)
T KOG1963|consen 377 -------------------------------DSTIYKLQVCDENY-----SDGDV---------------NIQVGITAVA 405 (792)
T ss_pred -------------------------------cceeeeEEEEeecc-----cCCcc---------------eeEEeeeeeh
Confidence 11122221110000 00000 0112355666
Q ss_pred EeCCCCcEEEEEe--------CCC--cEEEEEeecCe----EEEE-EecCCCCeeEEEEccC-C-CeEEEEeCCCcEEEE
Q 001184 882 FHPQDNNIIAIGM--------EDS--TIQIYNVRVDE----VKTK-LKGHQKHITGLAFSTN-L-NILVSSGSDAQLIFW 944 (1130)
Q Consensus 882 ~sp~~~~~lasg~--------~dg--~v~iwd~~~~~----~~~~-l~~h~~~V~~l~~s~d-g-~~L~s~s~Dg~i~vw 944 (1130)
.+. .|.+++++- .|| .+++|...... +... ...|...+.+.++.+. . .++++++.||.++||
T Consensus 406 ~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW 484 (792)
T KOG1963|consen 406 RSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIW 484 (792)
T ss_pred hhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEE
Confidence 666 466666653 233 47889776443 2222 2368777776666543 2 389999999999999
Q ss_pred ECCCCcccc----eeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCC
Q 001184 945 NTDTWEKRK----SIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCN 1020 (1130)
Q Consensus 945 d~~~~~~~~----~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~d 1020 (1130)
-+...+... ..........+..++...+|+.||..|+++.++.|.+||..+...+....+.. ..++..++|...
T Consensus 485 ~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~--~~~~~~~~~~~~ 562 (792)
T KOG1963|consen 485 VFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSR--NWPIAELLFTAQ 562 (792)
T ss_pred EEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCChhhhhcccccc--ccchHhHhhhcc
Confidence 984422111 11111112223468899999999999999999999999998832222222211 344555555432
Q ss_pred CC--EEEEEeCCCcEEEEeCCCcccccccCCCccccc-----CCCCCceeeeEEEEEcCCCCCEEE--------EEeCCC
Q 001184 1021 SQ--LIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQ-----ASPNSQTVFPLVVTSHPQEPNQLA--------VGLTDG 1085 (1130)
Q Consensus 1021 g~--~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~--------s~~~Dg 1085 (1130)
.. ..+.......+.+|++.++.+.-.+....++.. .....+.+....+++.+..+..+. ..+.|+
T Consensus 563 ~~~~~~~~~~~~~~l~~WNll~~~l~w~~s~~~~i~~~~~~~~~~~~s~v~s~~f~vi~~~p~~~~~~k~~~~~f~~~~~ 642 (792)
T KOG1963|consen 563 TQNDGALVHATQQRLSVWNLLSMSLIWNLSLSLRIEGVHVDRAADGDSSVGSTAFAVICWLPELLLVVKSIEQIFRGRDS 642 (792)
T ss_pred cccccceeeccCceEehHhhhhhheecchhhhhhhhcchhhhhhccccccCccceEEEeecccchhhhhhhhhhcccccc
Confidence 11 122223478899999998877653221111111 000112222222222222333444 778888
Q ss_pred cEEEEeCCCCc
Q 001184 1086 SVKVIEPSETE 1096 (1130)
Q Consensus 1086 ~v~vW~~~~~~ 1096 (1130)
+|.+++....+
T Consensus 643 ril~F~~~~pk 653 (792)
T KOG1963|consen 643 RILIFSGDSPK 653 (792)
T ss_pred eEEEecCCCch
Confidence 89898887766
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.1e-23 Score=220.50 Aligned_cols=276 Identities=16% Similarity=0.248 Sum_probs=219.2
Q ss_pred CCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeE-EEEe
Q 001184 764 TDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPC-VALS 842 (1130)
Q Consensus 764 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~-l~~s 842 (1130)
.+|...+..+++.+.. .++.++.||++++|+-.. ++.+......+|.+.|.+ +++-
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~----------------------~~~l~~~~~~~~~g~i~~~i~y~ 67 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKG----------------------KQYLETHAFEGPKGFIANSICYA 67 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCCceeeeeccC----------------------cccccceecccCcceeeccceec
Confidence 4588888888877655 788999999999996322 122221122246666666 7776
Q ss_pred c-CCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCe
Q 001184 843 K-NDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHI 920 (1130)
Q Consensus 843 ~-dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V 920 (1130)
+ ++-.+++|+ |..|.+|...+..++.++.+|...|.++.... ++. +++|++|.++++|.. +++...+++|...|
T Consensus 68 e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asV 143 (745)
T KOG0301|consen 68 ESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTASV 143 (745)
T ss_pred cccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcchhe
Confidence 4 444577777 99999999999999999999999999999877 555 889999999999986 45667799999999
Q ss_pred eEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeee
Q 001184 921 TGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIR 1000 (1130)
Q Consensus 921 ~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~ 1000 (1130)
+++++-|++ .++||+.|++|++|.-.+ ..+...+ |.+.|..+++-+++.+|-+++||.|+.|++ +|+++.
T Consensus 144 WAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~g-HtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~ 213 (745)
T KOG0301|consen 144 WAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSG-HTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLL 213 (745)
T ss_pred eeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhcc-chhheeeeEEecCCCeEeecCCceEEEEec-cCceee
Confidence 999999988 899999999999998754 2334444 448999999999999999999999999999 788888
Q ss_pred eeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEE
Q 001184 1001 QWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAV 1080 (1130)
Q Consensus 1001 ~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 1080 (1130)
...+| ..-|+++....++..++++++|++++||+.. ++...+..+ +.+++...+. + ..-+++
T Consensus 214 ~~~gh---tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP---------ttsiWsa~~L--~--NgDIvv 275 (745)
T KOG0301|consen 214 EMHGH---TNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP---------TTSIWSAKVL--L--NGDIVV 275 (745)
T ss_pred eeecc---ceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC---------ccceEEEEEe--e--CCCEEE
Confidence 87666 7899999999999999999999999999977 444444421 2345554443 2 235899
Q ss_pred EeCCCcEEEEeCCC
Q 001184 1081 GLTDGSVKVIEPSE 1094 (1130)
Q Consensus 1081 ~~~Dg~v~vW~~~~ 1094 (1130)
|+.||.|+||....
T Consensus 276 g~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 276 GGSDGRVRVFTVDK 289 (745)
T ss_pred eccCceEEEEEecc
Confidence 99999999999874
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.9e-22 Score=192.47 Aligned_cols=242 Identities=16% Similarity=0.104 Sum_probs=190.1
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecC
Q 001184 407 DSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS 486 (1130)
Q Consensus 407 ~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~ 486 (1130)
.....|+++.|+|.+..|++++.||++++||+....... .-.|..++.+++|.++.+ +++|+-||.|+.+|..
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDLN 83 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEec
Confidence 446789999999999999999999999999998864332 235899999999998765 8999999999999976
Q ss_pred CCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCC
Q 001184 487 GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGD 566 (1130)
Q Consensus 487 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1130)
......+..|..+|.++.+.+.. ..+++||.|++|++||.+.......+.... .|.++.. .|+.|++++. +
T Consensus 84 ~~~~~~igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v--~g~~LvVg~~----~ 154 (323)
T KOG1036|consen 84 TGNEDQIGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDV--SGNRLVVGTS----D 154 (323)
T ss_pred CCcceeeccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEEec--cCCEEEEeec----C
Confidence 66677777899999999987544 579999999999999999755554444333 5766655 4667777765 8
Q ss_pred cEEEEeeCCCCceeE-EEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----ceeEEEeccCC-------CCC
Q 001184 567 SHLVEWNESEGALKR-TYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV----NMLTSTEAEGG-------LPS 634 (1130)
Q Consensus 567 ~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~-------~~~ 634 (1130)
..+.+||+++..... .....-.-.++++++-|++.-+++++-||.|.+=.++.. +....++.|.. .-+
T Consensus 155 r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yP 234 (323)
T KOG1036|consen 155 RKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYP 234 (323)
T ss_pred ceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEE
Confidence 899999998755432 212222336889999998888999999999988766655 33344444421 226
Q ss_pred cceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 635 LPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 635 i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
|++++|+|-...+++|+.||.|.+||+.+.
T Consensus 235 VNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 235 VNAIAFHPIHGTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred eceeEeccccceEEecCCCceEEEccCcch
Confidence 899999999899999999999999998776
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-22 Score=220.14 Aligned_cols=279 Identities=18% Similarity=0.218 Sum_probs=218.5
Q ss_pred CccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCC
Q 001184 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1130)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1130)
|....+.++|.|+|..|++++.||.|++|+.......|... ..+...|.+++. +.
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti-----------------------~~~g~~v~~ia~--~s 66 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETI-----------------------DISGELVSSIAC--YS 66 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchh-----------------------hccCceeEEEee--cc
Confidence 77778999999999999999999999999865432222110 014556666665 44
Q ss_pred CEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEE
Q 001184 846 SYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLA 924 (1130)
Q Consensus 846 ~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~ 924 (1130)
.+|++++ +++|.+|....++.-..+....-++++++|+- +|.++|.|+.|-.|++-++.+......+++|.++|.+|.
T Consensus 67 ~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~ 145 (933)
T KOG1274|consen 67 NHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLS 145 (933)
T ss_pred cceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceeeee
Confidence 4777777 89999999998877666665667899999999 899999999999999999999999999999999999999
Q ss_pred EccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCC--CCCeEEEEEcCCCc-EEEEEcCCcEEEEECCCceeeee
Q 001184 925 FSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKL--PVGETRVQFHSDQV-RLLVNHETQLAIYDGSKMECIRQ 1001 (1130)
Q Consensus 925 ~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~d~~-~l~~~~d~~i~v~d~~~~~~~~~ 1001 (1130)
|+|.+++||+.+.||.|++||+.++..........+.... ...+..++|+|+|. +++.+.|+.|.+|+..+++....
T Consensus 146 ~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~ 225 (933)
T KOG1274|consen 146 YDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFK 225 (933)
T ss_pred EcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehee
Confidence 9999999999999999999999997765544332222221 24678899999955 55558999999999999999888
Q ss_pred eecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEE
Q 001184 1002 WVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVG 1081 (1130)
Q Consensus 1002 ~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 1081 (1130)
+..... ...+..+.|||+|+|||+++.||.|.|||+++-+. |. -...+.+++|.|+ .+-+-.-
T Consensus 226 Lr~~~~-ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~---------~~~~Vc~~aw~p~-~n~it~~ 288 (933)
T KOG1274|consen 226 LRDKLS-SSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HE---------FKRAVCCEAWKPN-ANAITLI 288 (933)
T ss_pred eccccc-ccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------cc---------ccceeEEEecCCC-CCeeEEE
Confidence 877654 33499999999999999999999999999998322 11 1134567888886 3444444
Q ss_pred eCCCcE
Q 001184 1082 LTDGSV 1087 (1130)
Q Consensus 1082 ~~Dg~v 1087 (1130)
..-|+.
T Consensus 289 ~~~g~~ 294 (933)
T KOG1274|consen 289 TALGTL 294 (933)
T ss_pred eecccc
Confidence 444443
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=206.71 Aligned_cols=223 Identities=16% Similarity=0.189 Sum_probs=191.7
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEec---
Q 001184 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL--- 485 (1130)
Q Consensus 409 ~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~--- 485 (1130)
.+.|.|++-+|+|.+|+.|+..|.|++|.+.+|..+. .+.+|-..|+++.|+.||. +++|||.||.|.+|..
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEee
Confidence 4679999999999999999999999999999999776 5689999999999999999 8999999999999972
Q ss_pred -------CCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEE
Q 001184 486 -------SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFS 558 (1130)
Q Consensus 486 -------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1130)
+-++++.|..|+-+|+++...+.+....|+|+|.|.++++||+..+.....+..+ ..+.+++.+|.++.+++
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lDpae~~~yi 234 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALDPAERVVYI 234 (476)
T ss_pred cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEcccccEEEe
Confidence 2356788999999999999887766689999999999999999988777766543 46899999999999999
Q ss_pred eeecCCCCcEEEEeeCCCC----------------ceeEEEecccC-ceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 001184 559 CGTSKEGDSHLVEWNESEG----------------ALKRTYIGFRK-KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN 621 (1130)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~----------------~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 621 (1130)
|+. +|.|.+.++... ..+..+.||.+ ..|+|++++.||..|++|+.||.++|||..+.+
T Consensus 235 Gt~----~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 235 GTE----EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred cCC----cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 986 888888776432 23456777766 589999999999999999999999999999999
Q ss_pred eeEEEeccCCCCCcceEEEcCC
Q 001184 622 MLTSTEAEGGLPSLPRLRFNKE 643 (1130)
Q Consensus 622 ~~~~~~~~~~~~~i~~v~~s~~ 643 (1130)
+++++.... ++|+.+.+.|-
T Consensus 311 ~iRtl~~~k--gpVtnL~i~~~ 330 (476)
T KOG0646|consen 311 CIRTLQTSK--GPVTNLQINPL 330 (476)
T ss_pred HHHHHhhhc--cccceeEeecc
Confidence 998887322 37888888663
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.5e-22 Score=203.80 Aligned_cols=290 Identities=16% Similarity=0.243 Sum_probs=228.1
Q ss_pred ceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--ceeEEEeccCCCCCcceEEEcCCCC-EEEEEeCCCcEEEEEcCCCc
Q 001184 589 KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV--NMLTSTEAEGGLPSLPRLRFNKEGN-LLVVTTADQGIKILANADGL 665 (1130)
Q Consensus 589 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~i~~v~~s~~~~-~l~~~~~dg~i~iw~~~~~~ 665 (1130)
+.|+++.|+|....+++++.||.++||.++.. ..++.+.... .+|.++.|.|+|. .+++++....++.||+.+.+
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~--fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEK--FPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeecc--CccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 37999999999999999999999999988654 3445554443 3899999999999 89999999999999986651
Q ss_pred hhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCcccee
Q 001184 666 RALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWE 745 (1130)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~ 745 (1130)
..+ ++|.
T Consensus 292 -~~k--------------------------~~~~---------------------------------------------- 298 (514)
T KOG2055|consen 292 -VTK--------------------------LKPP---------------------------------------------- 298 (514)
T ss_pred -ccc--------------------------ccCC----------------------------------------------
Confidence 000 0000
Q ss_pred eccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCccee
Q 001184 746 LTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMT 825 (1130)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 825 (1130)
T Consensus 299 -------------------------------------------------------------------------------- 298 (514)
T KOG2055|consen 299 -------------------------------------------------------------------------------- 298 (514)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEe
Q 001184 826 NDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNV 904 (1130)
Q Consensus 826 ~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~ 904 (1130)
.+.....+....+|+++++|+..+ .|.|.+....+++.+.+++. .+.|..++|+. +++.|.+.+.+|.|++||+
T Consensus 299 ---~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl 373 (514)
T KOG2055|consen 299 ---YGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSS-DSKELLASGGTGEVYVWNL 373 (514)
T ss_pred ---CCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEec-CCcEEEEEcCCceEEEEec
Confidence 000123455677889999999888 79999999999999988874 57799999998 7788888888999999999
Q ss_pred ecCeEEEEEecCCCCe--eEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE
Q 001184 905 RVDEVKTKLKGHQKHI--TGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1130)
Q Consensus 905 ~~~~~~~~l~~h~~~V--~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 982 (1130)
....++.++... +.| ++++.|++|.+||+|+..|.|-|||.++.-..........-......|+++.|++|.+.|+.
T Consensus 374 ~~~~~~~rf~D~-G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAi 452 (514)
T KOG2055|consen 374 RQNSCLHRFVDD-GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAI 452 (514)
T ss_pred CCcceEEEEeec-CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhh
Confidence 999999888732 333 67888999999999999999999997762211111000001112257899999999999997
Q ss_pred E---cCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 001184 983 N---HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039 (1130)
Q Consensus 983 ~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~ 1039 (1130)
+ ..+.+++-.+.+......|......-+.|+||+|||.|.+||.|..+|.+.+|.+.
T Consensus 453 aS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 453 ASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 3 47889999999999998888876556789999999999999999999999999864
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7e-22 Score=190.34 Aligned_cols=300 Identities=17% Similarity=0.237 Sum_probs=226.4
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC-CCCE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNF 423 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~ 423 (1130)
.|++.|+++...|...+++++|+.||.|.|||+++........+ +- -..|....+ --.+|.-.|.++-|-| |.-.
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~-k~~c~v~~~--h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IA-KHKCIVAKQ--HENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-ee-heeeecccc--CCccceeeeeeeEEeeecCce
Confidence 49999999999997555799999999999999986542211000 00 001111111 2458899999999999 6678
Q ss_pred EEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCC-ceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEE
Q 001184 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNK-QLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVY 501 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~-~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~ 501 (1130)
+.+++.|.+++|||..+-+... .+ .-.+.|++-++||-.. +.++++|..|-.|++-| .+|.+-+++.||.+.|.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~---~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl 192 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAV---DF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL 192 (397)
T ss_pred eecccccceEEEeecccceeeE---Ee-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence 8999999999999999865332 22 2456688889988543 44788899999999999 99999999999999999
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCC-cceeee--------------cCCCccEEEEEEecCCCeEEEeeecCCCC
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNV-GSRVDY--------------DAPGLWCTTMLYSADGSRLFSCGTSKEGD 566 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~--------------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1130)
++.|+|..+ -.|++|+.||.|++||++.. .+...+ ..|.+.+..++|+.++.++++++. +
T Consensus 193 aV~Wsp~~e-~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt----d 267 (397)
T KOG4283|consen 193 AVEWSPSSE-WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT----D 267 (397)
T ss_pred EEEeccCce-eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC----c
Confidence 999998654 68999999999999999865 333222 334557999999999999999987 8
Q ss_pred cEEEEeeCCCCceeEEEec---ccC---ceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEE
Q 001184 567 SHLVEWNESEGALKRTYIG---FRK---KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRF 640 (1130)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~---~~~---~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~ 640 (1130)
..+++|+...|+....-.+ +.. ..+. +. +.+...++.--.++.+.++++-.+..+..+..|.. .+.+.++
T Consensus 268 ~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k--~i~c~~~ 343 (397)
T KOG4283|consen 268 DRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLK--RINCAAY 343 (397)
T ss_pred cceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccc--eeeEEee
Confidence 8999999988764322111 111 0111 22 23334444455669999999999999999988844 7999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEc
Q 001184 641 NKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 641 s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
.|+-+...+|..|+.+..|-.
T Consensus 344 ~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 344 RPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cCchhhhhccccCCccccccc
Confidence 999999999999999999975
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-21 Score=208.70 Aligned_cols=273 Identities=13% Similarity=0.155 Sum_probs=203.6
Q ss_pred CEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEe
Q 001184 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF 428 (1130)
Q Consensus 349 ~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~ 428 (1130)
.|..++|-|||..+++.+ +..+.|||.+.|..+. .+++|...|.|++||.||+.+|+|+
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llq-------------------tLKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQ-------------------PLKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCccccc-------------------ccccccceEEEEEEccCCceeccCC
Confidence 899999999999766655 4589999999998875 5899999999999999999999999
Q ss_pred CCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCCCcCEEEEeeccc
Q 001184 429 TKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQK 508 (1130)
Q Consensus 429 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~~~v~~~~~~~~ 508 (1130)
.|+.|.+|+-+-...++ ..|++.|.|+.|+|-.. .++||+-. ..-+|....+.+...+ ...++.+++| .
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~K~k-ss~R~~~CsW--t 141 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVSKHK-SSSRIICCSW--T 141 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHHhhh-hheeEEEeee--c
Confidence 99999999976544333 35999999999999988 67888743 4568884444443332 3445666666 6
Q ss_pred CCccEEEEEecCCcEEEEEccCCcceeeec---CCCccEEEEEEecCCC-----eEEEeeecCCCCcEEEEeeCCCCcee
Q 001184 509 ENIHFIFSTAVDGKIKAWLYDNVGSRVDYD---APGLWCTTMLYSADGS-----RLFSCGTSKEGDSHLVEWNESEGALK 580 (1130)
Q Consensus 509 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~-----~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1130)
.||++++.|-.+|+|.+-+-. ++....+. +...+|.+++|+|... .+++.-. ..++..+.+. |+.+
T Consensus 142 nDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~Ls-G~~I 215 (1081)
T KOG1538|consen 142 NDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQLS-GKQI 215 (1081)
T ss_pred CCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEEec-ceee
Confidence 788999999999999887543 33333333 3556899999999643 3333322 3445555433 3333
Q ss_pred EEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001184 581 RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1130)
Q Consensus 581 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~ 660 (1130)
..-..- +....|+.+.++|.+++.||.|+.+.+|.. .|-.+.++....+ .|..++..|+++.++.|+.||+|..|+
T Consensus 216 gk~r~L-~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D~--WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 216 GKDRAL-NFDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQDS--WIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred cccccC-CCCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccce--eEEEEEEccCCceEEEEEccCeeehhh
Confidence 322211 124567889999999999999999999974 5556666554444 899999999999999999999999998
Q ss_pred cCC
Q 001184 661 NAD 663 (1130)
Q Consensus 661 ~~~ 663 (1130)
+..
T Consensus 292 l~f 294 (1081)
T KOG1538|consen 292 LIF 294 (1081)
T ss_pred hHH
Confidence 743
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.7e-22 Score=201.38 Aligned_cols=287 Identities=14% Similarity=0.211 Sum_probs=231.1
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCC-EEE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN-FIG 425 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~la 425 (1130)
.+.|++|.|+|.-. +|.+|+.||+++||.++...... ++ .+.-...+|.+.+|.|+|. .++
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~---------------lq--S~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPK---------------LQ--SIHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChh---------------he--eeeeccCccceeeecCCCceEEE
Confidence 46999999999987 78999999999999997543221 01 1222356899999999999 899
Q ss_pred EEeCCCeEEEEEecCCccceeeeeeecCC-CCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEE
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHV-GGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~-~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1130)
+++.....+.||+.+.+.. +...+.++. ..+.....|++++ +|+..|..|.|.+.. .+++.+..++ -.+.|..+
T Consensus 275 ~s~rrky~ysyDle~ak~~-k~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVT-KLKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred ecccceEEEEeeccccccc-cccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 9999999999999998743 333445554 4678889999999 899999999999999 8888888887 67889999
Q ss_pred eecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCc-cEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC------
Q 001184 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL-WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE------ 576 (1130)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~------ 576 (1130)
+|+ .++..|++.+.+|.|.+||++...+...+...+. .-++++.++++.+||+|+. .|.|.|||..+
T Consensus 351 ~fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 351 TFS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTN 424 (514)
T ss_pred EEe--cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCC
Confidence 996 5668999999999999999999887777765544 4577888899999999986 89999999643
Q ss_pred CceeEEEecccCceeEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCceeEEEecc-CCCCCcceEEEcCCCCEEEEEeCC
Q 001184 577 GALKRTYIGFRKKSAGVVQFDTTRNRILAAG--EDNQIKFWDMDNVNMLTSTEAE-GGLPSLPRLRFNKEGNLLVVTTAD 653 (1130)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~-~~~~~i~~v~~s~~~~~l~~~~~d 653 (1130)
.+++..+..... .|+.+.|+++.+.|+.++ .+..+++-.+.+.....-+... .....++|++|+|.+.+||+|..+
T Consensus 425 PkPik~~dNLtt-~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~ 503 (514)
T KOG2055|consen 425 PKPIKTVDNLTT-AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEA 503 (514)
T ss_pred CCchhhhhhhhe-eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCC
Confidence 455666555444 788999999999888877 4678999988877666555433 234468999999999999999999
Q ss_pred CcEEEEEcC
Q 001184 654 QGIKILANA 662 (1130)
Q Consensus 654 g~i~iw~~~ 662 (1130)
|.+.+|.+.
T Consensus 504 grv~l~kL~ 512 (514)
T KOG2055|consen 504 GRVHLFKLH 512 (514)
T ss_pred CceeeEeec
Confidence 999999863
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.9e-22 Score=204.65 Aligned_cols=281 Identities=15% Similarity=0.204 Sum_probs=223.2
Q ss_pred CccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCC-CCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecC
Q 001184 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQN-PSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKN 844 (1130)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~d 844 (1130)
|..-|.++.++...+.+++++. |.|+|||+...... |.... | .. .....|+++.+.||
T Consensus 418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqL---------d----------cl-~rdnyiRSckL~pd 476 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQL---------D----------CL-NRDNYIRSCKLLPD 476 (705)
T ss_pred cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccc---------c----------cc-CcccceeeeEecCC
Confidence 7788889999998888888765 68999998764221 11100 0 00 34678999999999
Q ss_pred CCEEEEEe-CCeEEEEECCCceeE--EEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCee
Q 001184 845 DSYVMSAG-GGKVSLFNMMNFKVM--TTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHIT 921 (1130)
Q Consensus 845 g~~la~~~-dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 921 (1130)
|+.|++|+ -.++.|||+..-... ..+......+.+++.+| |.++.+++..||.|.|||+.+..++..|+||.+.+.
T Consensus 477 grtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGas 555 (705)
T KOG0639|consen 477 GRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS 555 (705)
T ss_pred CceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCce
Confidence 99999999 578999999765443 33444445688899999 899999999999999999999999999999999999
Q ss_pred EEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-cCCcEEEEECCCceeee
Q 001184 922 GLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKMECIR 1000 (1130)
Q Consensus 922 ~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~ 1000 (1130)
||.+++||..|-+|+-|.+|+-||+..+.+. ..+.....|.++...|.+.+|+++ .++.+.|.....-+..
T Consensus 556 cIdis~dGtklWTGGlDntvRcWDlregrql-------qqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ky- 627 (705)
T KOG0639|consen 556 CIDISKDGTKLWTGGLDNTVRCWDLREGRQL-------QQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKY- 627 (705)
T ss_pred eEEecCCCceeecCCCccceeehhhhhhhhh-------hhhhhhhhheecccCCCccceeeecccCcEEEEecCCccce-
Confidence 9999999999999999999999999986543 233444788999999999999997 5777888877644433
Q ss_pred eeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEE
Q 001184 1001 QWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAV 1080 (1130)
Q Consensus 1001 ~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 1080 (1130)
.+.. |.+.|.++.|.+.|+++++.+.|+.+..|...-|..+.+.. ..+++. ++.-+. |..++||
T Consensus 628 qlhl---heScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk----------E~SsVl--sCDIS~-ddkyIVT 691 (705)
T KOG0639|consen 628 QLHL---HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK----------ESSSVL--SCDISF-DDKYIVT 691 (705)
T ss_pred eecc---cccEEEEEEecccCceeeecCchhhhhhccCccccceeecc----------ccCcce--eeeecc-CceEEEe
Confidence 3333 37899999999999999999999999999999888776664 233343 343333 5689999
Q ss_pred EeCCCcEEEEeC
Q 001184 1081 GLTDGSVKVIEP 1092 (1130)
Q Consensus 1081 ~~~Dg~v~vW~~ 1092 (1130)
|+.|..--||.+
T Consensus 692 GSGdkkATVYeV 703 (705)
T KOG0639|consen 692 GSGDKKATVYEV 703 (705)
T ss_pred cCCCcceEEEEE
Confidence 999988888865
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=201.76 Aligned_cols=253 Identities=16% Similarity=0.264 Sum_probs=203.0
Q ss_pred ecCCCccEEEEEEcCC-CCEEEEEeCCCeEEEEEecCCcc-------ceeeeeeecCCCCeeEEEEecCCCceEEEEEcC
Q 001184 405 VKDSSISVSRVAWSPD-GNFIGVAFTKHLIHLYTYQGSND-------LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD 476 (1130)
Q Consensus 405 ~~~h~~~V~~v~~spd-g~~las~~~d~~i~vwd~~~~~~-------~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~ 476 (1130)
...|.+.|+.+.+-|. ...+|+.+..+.|.|||...... ..+..++.||.+.-++++|++.... .+++++.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~ 198 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSD 198 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccC
Confidence 3478999999999995 55777888899999999865322 2233478999998899999998776 7999999
Q ss_pred CCcEEEEecC--CC------eeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEcc--CCcceeeecCCCccEEE
Q 001184 477 DKLIRVWDLS--GR------KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYD--NVGSRVDYDAPGLWCTT 546 (1130)
Q Consensus 477 d~~v~iwd~~--~~------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~--~~~~~~~~~~~~~~v~~ 546 (1130)
|++|++||.+ +. ....+.+|+..|..++|++... .++.+++.|+.+.|||++ +.+.......|...+.+
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~ 277 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC 277 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence 9999999932 22 3456789999999999998654 789999999999999999 45556677889999999
Q ss_pred EEEecCCC-eEEEeeecCCCCcEEEEeeCCCC-ceeEEEecccCceeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCce-
Q 001184 547 MLYSADGS-RLFSCGTSKEGDSHLVEWNESEG-ALKRTYIGFRKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDNVNM- 622 (1130)
Q Consensus 547 ~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~- 622 (1130)
++|+|-+. .||+++. |++|.+||+++- +.+.++.+|.+ .|..+.|+|... .|++++.|+.+.|||+..-..
T Consensus 278 ~~fnp~~~~ilAT~S~----D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 278 VAFNPFNEFILATGSA----DKTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEE 352 (422)
T ss_pred EEeCCCCCceEEeccC----CCcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCceeEecccCCcEEEEeccccccc
Confidence 99999655 4556655 999999999874 56788888777 899999999875 778889999999999864221
Q ss_pred -----------eEEEeccCCCCCcceEEEcCCCC-EEEEEeCCCcEEEEEcCCC
Q 001184 623 -----------LTSTEAEGGLPSLPRLRFNKEGN-LLVVTTADQGIKILANADG 664 (1130)
Q Consensus 623 -----------~~~~~~~~~~~~i~~v~~s~~~~-~l~~~~~dg~i~iw~~~~~ 664 (1130)
.-.+...+|...|..+.|+|+.. .+++.+.|+.+.||.....
T Consensus 353 q~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 353 QSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred cChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 12244556777899999999765 4677889999999997643
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-21 Score=185.46 Aligned_cols=247 Identities=16% Similarity=0.238 Sum_probs=187.4
Q ss_pred CCCccceEEEEEeccCCeEEEeee-CCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEe
Q 001184 764 TDSASKVARLLYTNSGIGILALWS-NGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALS 842 (1130)
Q Consensus 764 ~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s 842 (1130)
.+|...|..+.|-|-..-+++.++ |.++++||.++-.... + + ..++.|.+-++|
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~-------------~----------F--~me~~VYshamS 152 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAV-------------D----------F--KMEGKVYSHAMS 152 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeE-------------E----------e--ecCceeehhhcC
Confidence 558888999998886666666555 9999999876522110 0 0 235566777777
Q ss_pred cCCC---EEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecC-eEEEE-----
Q 001184 843 KNDS---YVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD-EVKTK----- 912 (1130)
Q Consensus 843 ~dg~---~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~~~~~----- 912 (1130)
|-.. ++|+|. +-.|++-|+.+|.+-.++.+|.+.|.++.|+|...-+||+|+.||.|++||+... -+...
T Consensus 153 p~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn 232 (397)
T KOG4283|consen 153 PMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHN 232 (397)
T ss_pred hhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeeccc
Confidence 6433 666776 5679999999999999999999999999999977788999999999999999743 22222
Q ss_pred ---------EecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE
Q 001184 913 ---------LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN 983 (1130)
Q Consensus 913 ---------l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 983 (1130)
-..|.+.|.+++|+.||.+|++++.|..+++|+..+|+....................+.--..+.++..-
T Consensus 233 ~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p 312 (397)
T KOG4283|consen 233 TKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFP 312 (397)
T ss_pred CccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEe
Confidence 23688899999999999999999999999999999877543332222211111222223322233344446
Q ss_pred cCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeC
Q 001184 984 HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDA 1038 (1130)
Q Consensus 984 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~ 1038 (1130)
.++.+.++.+-.|..++.+..| ...|.+.+|-||=+.+.++..|+.|..|-.
T Consensus 313 ~~~~lall~~~sgs~ir~l~~h---~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 313 NDGSLALLNLLEGSFVRRLSTH---LKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cCCeEEEEEccCceEEEeeecc---cceeeEEeecCchhhhhccccCCccccccc
Confidence 6799999999999999999887 789999999999999999999999999976
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.6e-20 Score=203.77 Aligned_cols=205 Identities=16% Similarity=0.198 Sum_probs=153.4
Q ss_pred eEEEEecCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCC-cEEEEEeecCeEEEEE
Q 001184 837 PCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS-TIQIYNVRVDEVKTKL 913 (1130)
Q Consensus 837 ~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg-~v~iwd~~~~~~~~~l 913 (1130)
..++++|+++.+++++ ++.|++||+.+.+.+..+.. ...+.+++|+| ++.+++++..++ .+.+||..+++....+
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~ 153 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNV 153 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEE
Confidence 3567888888776553 68899999998888777753 23468899999 888888888765 5678899888776655
Q ss_pred ecCCCCeeEEEEccCCCeEEEE-eCCCcEEEEECCCCcccceeeEeccCCC-CCCCeEEEEEcCCCcEEEE--EcCCcEE
Q 001184 914 KGHQKHITGLAFSTNLNILVSS-GSDAQLIFWNTDTWEKRKSIAIQLPAGK-LPVGETRVQFHSDQVRLLV--NHETQLA 989 (1130)
Q Consensus 914 ~~h~~~V~~l~~s~dg~~L~s~-s~Dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~~--~~d~~i~ 989 (1130)
... ..+.+++|+|||++|+.+ ..++.|++||+.+++............. .......++|+|+++++++ +.++.+.
T Consensus 154 ~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~ 232 (300)
T TIGR03866 154 LVD-QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVA 232 (300)
T ss_pred EcC-CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEE
Confidence 433 346789999999988654 4699999999998765443322211111 1123456889999998655 4567899
Q ss_pred EEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEeCCCcccccccC
Q 001184 990 IYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRLRCRIA 1048 (1130)
Q Consensus 990 v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~-~Dg~i~vwd~~~~~~~~~~~ 1048 (1130)
+||..+++.+..+.. ...+.+++|+|+|++|++++ .+|.|+|||+.+++.+.++.
T Consensus 233 v~d~~~~~~~~~~~~----~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 233 VVDAKTYEVLDYLLV----GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EEECCCCcEEEEEEe----CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 999999888766533 34788999999999998864 68999999999999887775
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-21 Score=197.31 Aligned_cols=291 Identities=15% Similarity=0.213 Sum_probs=218.1
Q ss_pred CcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeE-EEeccCCCCCcceEEEcCC
Q 001184 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNMLT-STEAEGGLPSLPRLRFNKE 643 (1130)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~-~~~~~~~~~~i~~v~~s~~ 643 (1130)
...+.+||+++|.....+.+.....-..+..- .+.+++++. ....|.+|.+....... .+..+ +++.+++-+|+
T Consensus 17 ~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~P---g~v~al~s~n~ 92 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLP---GPVHALASSNL 92 (476)
T ss_pred CcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccc---cceeeeecCCC
Confidence 56699999999999999887522122222111 235666655 44578999987655444 22222 26899999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCc
Q 001184 644 GNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADS 723 (1130)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1130)
|.+|+.|+..|.|++|.+.+| .++..+.
T Consensus 93 G~~l~ag~i~g~lYlWelssG-~LL~v~~--------------------------------------------------- 120 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSSG-ILLNVLS--------------------------------------------------- 120 (476)
T ss_pred ceEEEeecccCcEEEEEeccc-cHHHHHH---------------------------------------------------
Confidence 999999999999999999998 4443331
Q ss_pred cccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCC
Q 001184 724 AARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNP 803 (1130)
Q Consensus 724 ~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~ 803 (1130)
+|...|+++.|+.||..+++++.||.|.+|.+..-...
T Consensus 121 -----------------------------------------aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a- 158 (476)
T KOG0646|consen 121 -----------------------------------------AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA- 158 (476)
T ss_pred -----------------------------------------hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc-
Confidence 27889999999999999999999999999986532110
Q ss_pred CcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCC--CEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEE
Q 001184 804 SGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND--SYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFL 880 (1130)
Q Consensus 804 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg--~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l 880 (1130)
..+...........|.-+|+.+.+.+.| .++++++ |.++++||+..+.++.++. .+..+.++
T Consensus 159 --------------~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av 223 (476)
T KOG0646|consen 159 --------------DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAV 223 (476)
T ss_pred --------------ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeE
Confidence 0011111111223688999999987764 4777777 9999999999999988876 46679999
Q ss_pred EEeCCCCcEEEEEeCCCcEEEEEeecC----------------eEEEEEecCCC--CeeEEEEccCCCeEEEEeCCCcEE
Q 001184 881 AFHPQDNNIIAIGMEDSTIQIYNVRVD----------------EVKTKLKGHQK--HITGLAFSTNLNILVSSGSDAQLI 942 (1130)
Q Consensus 881 ~~sp~~~~~lasg~~dg~v~iwd~~~~----------------~~~~~l~~h~~--~V~~l~~s~dg~~L~s~s~Dg~i~ 942 (1130)
+.+| ..+.+++|+.+|.|.+.++... ..+..+.||.+ +|+|++.+-||..|++|+.||.|+
T Consensus 224 ~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~Vc 302 (476)
T KOG0646|consen 224 ALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVC 302 (476)
T ss_pred EEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEE
Confidence 9999 8999999999999999877532 34566789998 999999999999999999999999
Q ss_pred EEECCCCcccceeeEeccCCCCCCCeEEEEEcCC
Q 001184 943 FWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSD 976 (1130)
Q Consensus 943 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 976 (1130)
|||+.+.++.+.... ..++|+.+.+.|-
T Consensus 303 vWdi~S~Q~iRtl~~------~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 303 VWDIYSKQCIRTLQT------SKGPVTNLQINPL 330 (476)
T ss_pred EEecchHHHHHHHhh------hccccceeEeecc
Confidence 999999776554431 2266777777554
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-21 Score=198.04 Aligned_cols=293 Identities=18% Similarity=0.252 Sum_probs=225.2
Q ss_pred CCCCEEEEEEecCCC-eEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC-CCCE
Q 001184 346 QGSSVVSMDFHPFHH-TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNF 423 (1130)
Q Consensus 346 h~~~V~~v~fspdg~-~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~ 423 (1130)
+..+|++++|+|... .++|+|..-|.|=+||+.+.+..... ...+..|.++|.++.|+| +-..
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~---------------v~~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDG---------------VYLFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCc---------------eEEeccCCccccceEecCCChhh
Confidence 788999999999876 78999999999999999644333221 115779999999999999 4568
Q ss_pred EEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCeeeEecCCCcCEE
Q 001184 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPVY 501 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~~~~~~h~~~v~ 501 (1130)
+.+.+.||+|+.-|++++. ......+......+.++.|+.+.. .++.+..=|...+|| ..+.....+.-|...|.
T Consensus 250 i~ssSyDGtiR~~D~~~~i-~e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNI-SEEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchh-hHHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 8899999999999998864 233334444556788899999888 677787777999999 56666778888999999
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcce----eeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC--
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR----VDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES-- 575 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-- 575 (1130)
+++++|... .+++|+|.|++.+|||++..... .....|...|.+..|||++-.|++.+. |..|++||..
T Consensus 327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~IRv~dss~~ 401 (498)
T KOG4328|consen 327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEIRVFDSSCI 401 (498)
T ss_pred eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCceEEeecccc
Confidence 999998654 78999999999999999875433 345568889999999999888888876 8999999973
Q ss_pred --CCceeEEEecccCc----eeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcce-EEEcCCCC-EE
Q 001184 576 --EGALKRTYIGFRKK----SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPR-LRFNKEGN-LL 647 (1130)
Q Consensus 576 --~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~-v~~s~~~~-~l 647 (1130)
.-.+..++...+.. ...-..|.|+.+++++|-.-..|-|+|-..++.+..+..+... .|.+ ..|+|-+. ++
T Consensus 402 sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~-tI~~vn~~HP~~~~~~ 480 (498)
T KOG4328|consen 402 SAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS-TIPSVNEFHPMRDTLA 480 (498)
T ss_pred cccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc-ccccceeeccccccee
Confidence 23333333321111 1223679999999999999999999999999888776544332 3444 57999777 55
Q ss_pred EEEeCCCcEEEEEcC
Q 001184 648 VVTTADQGIKILANA 662 (1130)
Q Consensus 648 ~~~~~dg~i~iw~~~ 662 (1130)
+.++..|.|.||--+
T Consensus 481 aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 481 AGGNSSGKIYVFTNK 495 (498)
T ss_pred ccCCccceEEEEecC
Confidence 556677888888643
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-22 Score=219.06 Aligned_cols=235 Identities=18% Similarity=0.344 Sum_probs=211.2
Q ss_pred ecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001184 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1130)
Q Consensus 405 ~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd 484 (1130)
+..|...|.|+..-..++.+++|+.|..+-+|.+.....+. .+.+|..+|.++.|+++.. +|++|+.+|+|++||
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence 44788899999987789999999999999999987655443 5889999999999999998 899999999999999
Q ss_pred -cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecC
Q 001184 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1130)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1130)
..++.++++.||...+.++.|+|.. .+.++|+.|+.+++||.+..++...+..|...+..+.|+|+|++++.++.
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P~~--~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e-- 174 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHPYG--EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE-- 174 (825)
T ss_pred hhhhhhhhhhhccccCcceeeeccce--EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC--
Confidence 8899999999999999999997654 78899999999999999999999999999999999999999999999985
Q ss_pred CCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCC
Q 001184 564 EGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1130)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~ 643 (1130)
|..+++||...|+....|.+|.. .+..+.|+|..-.++.|+.|+++++||+++.+.+...... ...|.+..|+|+
T Consensus 175 --d~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 175 --DNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPD 249 (825)
T ss_pred --cceeeeecccccccccccccccc-cccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeecCC
Confidence 79999999999999999998776 7888999998888999999999999999998888776655 347999999999
Q ss_pred CCEEEEEeCC
Q 001184 644 GNLLVVTTAD 653 (1130)
Q Consensus 644 ~~~l~~~~~d 653 (1130)
+..+++|...
T Consensus 250 ~~~~~~G~q~ 259 (825)
T KOG0267|consen 250 GKIVLSGEQI 259 (825)
T ss_pred ceeeecCchh
Confidence 9988888654
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.8e-21 Score=184.71 Aligned_cols=251 Identities=13% Similarity=0.226 Sum_probs=191.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCee
Q 001184 412 VSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKL 490 (1130)
Q Consensus 412 V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~ 490 (1130)
..|+.||+.|.+||+|+.||.|.|||+.+...- ..+.+|..+|++++||+||+ .|+|+|.|..|.+|| .+|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia---r~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA---RMLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchh---hhhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 789999999999999999999999999986533 36889999999999999999 899999999999999 999999
Q ss_pred eEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceee-ecCCCc---cEEEEEEecCCCeEEEeeecCCCC
Q 001184 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD-YDAPGL---WCTTMLYSADGSRLFSCGTSKEGD 566 (1130)
Q Consensus 491 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~---~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1130)
+.++ ...+|+.+.|+|......+++--.. .-.+-++........ ....+. ...+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~~~~-sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATIMEE-SPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEEecC-CcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 9887 7899999999998776655554333 344445544222221 111111 2233468999999999975 9
Q ss_pred cEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-------cee--EEEeccCCCCCcce
Q 001184 567 SHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV-------NML--TSTEAEGGLPSLPR 637 (1130)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-------~~~--~~~~~~~~~~~i~~ 637 (1130)
|.+.++|..+.+++..++-.....|..+.++..|++++.-+.|+.||.|+...- ++. +.+..--....-.+
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 999999999999998887665457888999999999999999999999997631 111 11111111113468
Q ss_pred EEEcCCCCEEEEEeC-CCcEEEEEcCCCchhhhhhccc
Q 001184 638 LRFNKEGNLLVVTTA-DQGIKILANADGLRALRAIETR 674 (1130)
Q Consensus 638 v~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~ 674 (1130)
++|+.+|.+++.++. ...++||.-..| .+++.+.|.
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sLVKILhG~ 291 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIG-SLVKILHGT 291 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCc-ceeeeecCC
Confidence 899999999887764 467999998777 566655543
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-19 Score=200.76 Aligned_cols=268 Identities=12% Similarity=0.079 Sum_probs=197.3
Q ss_pred EEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE-EEEeCCCeEEEEEecC
Q 001184 362 LLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI-GVAFTKHLIHLYTYQG 440 (1130)
Q Consensus 362 llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l-as~~~d~~i~vwd~~~ 440 (1130)
++++++.|+.|++||+.+++.+. .+..+. .+.+++|+|||+.+ ++++.++.|++||..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~-------------------~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTR-------------------TFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEE-------------------EEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 68899999999999999887654 233343 46789999999976 5667889999999998
Q ss_pred CccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEec
Q 001184 441 SNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV 519 (1130)
Q Consensus 441 ~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 519 (1130)
++... .+..+.. +..++|+|+++. ++++++.|+.+++|| .+++.+..+.. ...+.+++|++ ++.++++++.
T Consensus 63 ~~~~~---~~~~~~~-~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~--dg~~l~~~~~ 134 (300)
T TIGR03866 63 GEVIG---TLPSGPD-PELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP--DGKIVVNTSE 134 (300)
T ss_pred CcEEE---eccCCCC-ccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC--CCCEEEEEec
Confidence 76543 3333333 567899999984 345566789999999 66666666653 34467788854 5678888877
Q ss_pred CC-cEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccC------ceeE
Q 001184 520 DG-KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRK------KSAG 592 (1130)
Q Consensus 520 dg-~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~ 592 (1130)
++ .+.+||.++......... ...+..++|+|+++++++++. .++.|++||.++++.+..+..+.. ....
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 65 567789877655443322 234578999999998876542 378999999999987776542211 1123
Q ss_pred EEEEcCCCCEEEE-EeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEE-eCCCcEEEEEcCCC
Q 001184 593 VVQFDTTRNRILA-AGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVT-TADQGIKILANADG 664 (1130)
Q Consensus 593 ~~~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~ 664 (1130)
.++|+|+++++++ .+.++.+.+||..+++.+..+.. ++ .+.+++|+|+|++|+++ ..++.|.+||+.++
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~--~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV-GQ--RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe-CC--CcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 5789999998655 45567899999999887765543 22 57899999999999886 46899999999887
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-20 Score=195.91 Aligned_cols=468 Identities=16% Similarity=0.165 Sum_probs=291.9
Q ss_pred CeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcce
Q 001184 456 GVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR 534 (1130)
Q Consensus 456 ~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~ 534 (1130)
.|..++|-|||.+++++++ ..+.+|| .+|..+.++++|.+.|++++|+ .||+.+++|+.|..|.+|.-.-.+.
T Consensus 14 ci~d~afkPDGsqL~lAAg---~rlliyD~ndG~llqtLKgHKDtVycVAys--~dGkrFASG~aDK~VI~W~~klEG~- 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG---SRLLVYDTSDGTLLQPLKGHKDTVYCVAYA--KDGKRFASGSADKSVIIWTSKLEGI- 87 (1081)
T ss_pred chheeEECCCCceEEEecC---CEEEEEeCCCcccccccccccceEEEEEEc--cCCceeccCCCceeEEEecccccce-
Confidence 6999999999997433333 4799999 9999999999999999999995 6779999999999999997543222
Q ss_pred eeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEE
Q 001184 535 VDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKF 614 (1130)
Q Consensus 535 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 614 (1130)
.. ..|+..|.|+.|+|-...|++|+- ...-+|........+ .. ....+.+++|..||++++.|-.+|+|.+
T Consensus 88 Lk-YSH~D~IQCMsFNP~~h~LasCsL-----sdFglWS~~qK~V~K-~k--ss~R~~~CsWtnDGqylalG~~nGTIsi 158 (1081)
T KOG1538|consen 88 LK-YSHNDAIQCMSFNPITHQLASCSL-----SDFGLWSPEQKSVSK-HK--SSSRIICCSWTNDGQYLALGMFNGTISI 158 (1081)
T ss_pred ee-eccCCeeeEeecCchHHHhhhcch-----hhccccChhhhhHHh-hh--hheeEEEeeecCCCcEEEEeccCceEEe
Confidence 22 347788999999999999999984 456788866544332 21 2236788999999999999999999999
Q ss_pred EeCCCCceeEEEeccCCCCCcceEEEcCCC-----CEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccc
Q 001184 615 WDMDNVNMLTSTEAEGGLPSLPRLRFNKEG-----NLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPG 689 (1130)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~i~~v~~s~~~-----~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1130)
-+....+.+..-...+...+|.+++|+|.. ..+++.....++.++.+.... .
T Consensus 159 RNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~-I---------------------- 215 (1081)
T KOG1538|consen 159 RNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ-I---------------------- 215 (1081)
T ss_pred ecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee-e----------------------
Confidence 876544444444444566789999999954 345555555555555543220 0
Q ss_pred cceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccc
Q 001184 690 SAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASK 769 (1130)
Q Consensus 690 ~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 769 (1130)
|. . ..-.-.
T Consensus 216 -------------------------------------------------gk--------------~--------r~L~Fd 224 (1081)
T KOG1538|consen 216 -------------------------------------------------GK--------------D--------RALNFD 224 (1081)
T ss_pred -------------------------------------------------cc--------------c--------ccCCCC
Confidence 00 0 001122
Q ss_pred eEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEE
Q 001184 770 VARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVM 849 (1130)
Q Consensus 770 i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la 849 (1130)
-.++.+.++|.+++.||.|+.+.+|.-. |..+.. + +....+|+.++..|+++.++
T Consensus 225 P~CisYf~NGEy~LiGGsdk~L~~fTR~-----------------------GvrLGT-v-g~~D~WIWtV~~~PNsQ~v~ 279 (1081)
T KOG1538|consen 225 PCCISYFTNGEYILLGGSDKQLSLFTRD-----------------------GVRLGT-V-GEQDSWIWTVQAKPNSQYVV 279 (1081)
T ss_pred chhheeccCCcEEEEccCCCceEEEeec-----------------------CeEEee-c-cccceeEEEEEEccCCceEE
Confidence 3478899999999999999999998521 111111 1 13678999999999999999
Q ss_pred EEe-CCeEEEEECCCceeEEEEe-------------------CCCCCe------EEEEEeCCCCcEEEEEeCCCcEEEEE
Q 001184 850 SAG-GGKVSLFNMMNFKVMTTFM-------------------SPPPAS------TFLAFHPQDNNIIAIGMEDSTIQIYN 903 (1130)
Q Consensus 850 ~~~-dg~i~iwd~~~~~~~~~~~-------------------~~~~~i------~~l~~sp~~~~~lasg~~dg~v~iwd 903 (1130)
.|+ ||+|-.|++.......... +....| ..+++ -.+.||+--.+ .|.||.
T Consensus 280 ~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiai---YrnrLAVQLpe-ki~iYe 355 (1081)
T KOG1538|consen 280 VGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAI---YRNRLAVQLPE-KILIYE 355 (1081)
T ss_pred EEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHh---hhhhheecccc-eEEEEe
Confidence 998 9999999975322211110 001111 11222 12345555444 488888
Q ss_pred eecCeEEEE-EecCCCCeeEEEEc---cCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCc-
Q 001184 904 VRVDEVKTK-LKGHQKHITGLAFS---TNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV- 978 (1130)
Q Consensus 904 ~~~~~~~~~-l~~h~~~V~~l~~s---~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~- 978 (1130)
+.+++.... ++-...-+..+.+| -.++.++. +.+..+.-+|+..-.++....-.. ..-..+.=-|-|+
T Consensus 356 l~se~~~~mhY~v~ekI~kkf~cSLlVVc~~HiVl-CqekrLqClDF~Gvk~ReW~M~S~------iRYikV~GGP~gRE 428 (1081)
T KOG1538|consen 356 LYSEDLSDMHYRVKEKIIKKFECSLLVVCANHIVL-CQEKRLQCLDFSGVKEREWQMESL------IRYIKVIGGPPGRE 428 (1081)
T ss_pred ccccccccchhHHHHHHHhhccceEEEEEcCeEEE-EcccceeeecccchhhhhhhHHHH------HHhhhhhcCCCCcc
Confidence 776543211 00000001111111 11334433 346667777776533221100000 0000011112222
Q ss_pred EEEE-EcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCC
Q 001184 979 RLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQAS 1057 (1130)
Q Consensus 979 ~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 1057 (1130)
-|++ -.+|.+.-.=+.+.-++..... ...|.|+.++...+.||+..+.++..++|+.+++.+.+-..
T Consensus 429 gL~vGlknGqV~kiF~dN~~PiLl~~~----~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~elL~QEpg-------- 496 (1081)
T KOG1538|consen 429 GLLVGLKNGQVLKIFVDNLFPILLLKQ----ATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKELLFQEPG-------- 496 (1081)
T ss_pred eeEEEecCCcEEEEEecCCchhheecc----cceeEEeeccCCcceEEEEccCCeEEEEEccCCceEeecCC--------
Confidence 2233 3455443222232222222111 46899999999999999999999999999999998876542
Q ss_pred CCCceeeeEEEEEcCCCCCEEEEEeCCCcEE
Q 001184 1058 PNSQTVFPLVVTSHPQEPNQLAVGLTDGSVK 1088 (1130)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~ 1088 (1130)
+.++.|+....++|+..+. |.+.
T Consensus 497 -------~nSV~wNT~~E~MlcfT~~-g~L~ 519 (1081)
T KOG1538|consen 497 -------ANSVAWNTQCEDMLCFTGG-GYLN 519 (1081)
T ss_pred -------CceEEeeccccceEEEecC-CceE
Confidence 2346777766666666655 4343
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-20 Score=195.26 Aligned_cols=316 Identities=16% Similarity=0.234 Sum_probs=229.7
Q ss_pred eeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEE
Q 001184 448 LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW 526 (1130)
Q Consensus 448 ~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vw 526 (1130)
..+.||++.|.+|+..|.|. +|++|+.||+|+||. .+|+|++++. ..+.|.|++|+|.++..+|+.+-.+. +.+-
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~--wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~iv 469 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGE--WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIV 469 (733)
T ss_pred eeEeccCCeEEEEEecCCcc--eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEEe
Confidence 45789999999999999999 899999999999999 9999999887 56789999999998877777766554 5444
Q ss_pred EccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc----eeEEEecccCceeEEEEEcCCCCE
Q 001184 527 LYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA----LKRTYIGFRKKSAGVVQFDTTRNR 602 (1130)
Q Consensus 527 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~ 602 (1130)
+..-+..+.. -+....|+.+-.....++.+..|.-...+ -++....|. ..|..+.|+..|.|
T Consensus 470 np~~G~~~e~-------------~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~-k~i~~vtWHrkGDY 535 (733)
T KOG0650|consen 470 NPIFGDRLEV-------------GPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHP-KSIRQVTWHRKGDY 535 (733)
T ss_pred Cccccchhhh-------------cchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecC-CccceeeeecCCce
Confidence 4332211110 01111222221112235567788754211 122333333 37999999999999
Q ss_pred EEEEeC---CCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccc
Q 001184 603 ILAAGE---DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETS 679 (1130)
Q Consensus 603 l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 679 (1130)
|++... ...|.|.++........+....+ .+.++.|+|...+|++++. ..|+|||+... ++.+.+.
T Consensus 536 latV~~~~~~~~VliHQLSK~~sQ~PF~kskG--~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kq-elvKkL~------- 604 (733)
T KOG0650|consen 536 LATVMPDSGNKSVLIHQLSKRKSQSPFRKSKG--LVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQ-ELVKKLL------- 604 (733)
T ss_pred EEEeccCCCcceEEEEecccccccCchhhcCC--ceeEEEecCCCceEEEEec-cceEEEehhHH-HHHHHHh-------
Confidence 999754 35688999877665544433333 6899999999999988864 58999998664 3333221
Q ss_pred cccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEE
Q 001184 680 RASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVA 759 (1130)
Q Consensus 680 ~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~ 759 (1130)
T Consensus 605 -------------------------------------------------------------------------------- 604 (733)
T KOG0650|consen 605 -------------------------------------------------------------------------------- 604 (733)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEE
Q 001184 760 MPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCV 839 (1130)
Q Consensus 760 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l 839 (1130)
.....|..+
T Consensus 605 -----------------------------------------------------------------------tg~kwiS~m 613 (733)
T KOG0650|consen 605 -----------------------------------------------------------------------TGSKWISSM 613 (733)
T ss_pred -----------------------------------------------------------------------cCCeeeeee
Confidence 013345667
Q ss_pred EEecCCCEEEEEe-CCeEEEEECCC-ceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEee------cC---e
Q 001184 840 ALSKNDSYVMSAG-GGKVSLFNMMN-FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR------VD---E 908 (1130)
Q Consensus 840 ~~s~dg~~la~~~-dg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~------~~---~ 908 (1130)
+++|.|.-|+.++ |+.+..+|+.- .+..+++..|...+++++|++ .-.++++|+.||++.|+.-. .. -
T Consensus 614 sihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliV 692 (733)
T KOG0650|consen 614 SIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIV 692 (733)
T ss_pred eecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCceE
Confidence 7777777777776 77788888753 356778888999999999999 88899999999999998532 11 3
Q ss_pred EEEEEecCCCC----eeEEEEccCCCeEEEEeCCCcEEEE
Q 001184 909 VKTKLKGHQKH----ITGLAFSTNLNILVSSGSDAQLIFW 944 (1130)
Q Consensus 909 ~~~~l~~h~~~----V~~l~~s~dg~~L~s~s~Dg~i~vw 944 (1130)
++..+++|... |....|+|...+|++++.||+|++|
T Consensus 693 PlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 693 PLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 46778898765 8999999999999999999999998
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-20 Score=198.77 Aligned_cols=288 Identities=14% Similarity=0.134 Sum_probs=210.6
Q ss_pred CeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEE
Q 001184 780 IGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSL 858 (1130)
Q Consensus 780 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~i 858 (1130)
..|+.+.++|.|.++|.....+.+ +..++. .+..|...|..+.+-|....|++++ |.++++
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr~---------------ee~~lk---~~~aH~nAifDl~wapge~~lVsasGDsT~r~ 126 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFRL---------------EERQLK---KPLAHKNAIFDLKWAPGESLLVSASGDSTIRP 126 (720)
T ss_pred ceEEEecCCCceeeecchhhhcch---------------hhhhhc---ccccccceeEeeccCCCceeEEEccCCceeee
Confidence 456666779999999865533221 111111 1226899999999999666777776 889999
Q ss_pred EECCCceeEEE--EeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCe---------------------------E
Q 001184 859 FNMMNFKVMTT--FMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE---------------------------V 909 (1130)
Q Consensus 859 wd~~~~~~~~~--~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~---------------------------~ 909 (1130)
||+++.++... +.+|.+.+.++||.|.+...+++|+.||.|.|||+.-.. .
T Consensus 127 Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr 206 (720)
T KOG0321|consen 127 WDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKR 206 (720)
T ss_pred eeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcc
Confidence 99999999877 889999999999999999999999999999999986321 1
Q ss_pred EEEEecCCCCeeE---EEEccCCCeEEEEeC-CCcEEEEECCCCccccee-e---EeccCC-CCCCCeEEEEEcCCCcEE
Q 001184 910 KTKLKGHQKHITG---LAFSTNLNILVSSGS-DAQLIFWNTDTWEKRKSI-A---IQLPAG-KLPVGETRVQFHSDQVRL 980 (1130)
Q Consensus 910 ~~~l~~h~~~V~~---l~~s~dg~~L~s~s~-Dg~i~vwd~~~~~~~~~~-~---~~~~~~-~~~~~v~~~~~s~d~~~l 980 (1130)
+.....|...|.+ +.+..|...||++|. |+.|+|||+......... . ...+.+ .....+.++.....|.+|
T Consensus 207 ~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L 286 (720)
T KOG0321|consen 207 IRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYL 286 (720)
T ss_pred ccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeE
Confidence 1123356666666 667778999999998 999999999875432111 1 111111 112567888888888988
Q ss_pred EE-EcCCcEEEEECCCce--eeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCC
Q 001184 981 LV-NHETQLAIYDGSKME--CIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQAS 1057 (1130)
Q Consensus 981 ~~-~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 1057 (1130)
.+ +.|+.|+.|++.+.. .+..+.++...... ..-..|||+.+|++|+.|...++|.+.+-+.-..+.
T Consensus 287 ~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~-vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l--------- 356 (720)
T KOG0321|consen 287 FASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFY-VKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL--------- 356 (720)
T ss_pred EEEecCCcEEEEeccccCcCchhhccCcccceee-eeeecCCCCceEeccCCCcceeeeeecCccCChhhh---------
Confidence 87 689999999998543 23333333211112 233569999999999999999999998876543332
Q ss_pred CCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q 001184 1058 PNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1096 (1130)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~ 1096 (1130)
-+|.+.++.++|.|.+-.-++++++|.++++|++..+.
T Consensus 357 -~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 357 -LGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred -hCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 35778888999999877789999999999999997543
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-20 Score=195.22 Aligned_cols=325 Identities=10% Similarity=0.157 Sum_probs=232.4
Q ss_pred eeeeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcE
Q 001184 401 QAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480 (1130)
Q Consensus 401 ~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v 480 (1130)
...+++||++.|.|+...|.|.+||+|+.||+|+||.+.+|.|++.. . -.+.|.+|+|+|.+...+|+.+-.+ .+
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~-~---~d~~I~~vaw~P~~~~~vLAvA~~~-~~ 466 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV-Q---FDSEIRSVAWNPLSDLCVLAVAVGE-CV 466 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE-e---ecceeEEEEecCCCCceeEEEEecC-ce
Confidence 34478999999999999999999999999999999999999998743 2 3447999999999886455555444 47
Q ss_pred EEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEE----ecCCcEEEEEccCCc----ceeeecCCCccEEEEEEec
Q 001184 481 RVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFST----AVDGKIKAWLYDNVG----SRVDYDAPGLWCTTMLYSA 551 (1130)
Q Consensus 481 ~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----s~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~s~ 551 (1130)
.|-+ .-|..+..-.. . ..|+++ ..++.+..|.-.... .+.....+...|..+.|+.
T Consensus 467 ~ivnp~~G~~~e~~~t--~-------------ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr 531 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPT--K-------------ELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR 531 (733)
T ss_pred EEeCccccchhhhcch--h-------------hhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec
Confidence 7777 55533221110 0 111111 234567778544211 1234455777899999999
Q ss_pred CCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCC
Q 001184 552 DGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGG 631 (1130)
Q Consensus 552 ~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 631 (1130)
.|.||++...+ ++...|.|+++.......-|.... +.+.++.|+|...++++++. ..|+|||+...+.++.+...
T Consensus 532 kGDYlatV~~~-~~~~~VliHQLSK~~sQ~PF~ksk-G~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg-- 606 (733)
T KOG0650|consen 532 KGDYLATVMPD-SGNKSVLIHQLSKRKSQSPFRKSK-GLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTG-- 606 (733)
T ss_pred CCceEEEeccC-CCcceEEEEecccccccCchhhcC-CceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcC--
Confidence 99999998742 346789999987766655554433 37889999999999888876 78999999987777665433
Q ss_pred CCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCC
Q 001184 632 LPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSP 711 (1130)
Q Consensus 632 ~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~ 711 (1130)
...|..++.+|.|..|+.|+.|+.+..+|+.-.....+.+..
T Consensus 607 ~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~-------------------------------------- 648 (733)
T KOG0650|consen 607 SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRL-------------------------------------- 648 (733)
T ss_pred CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhh--------------------------------------
Confidence 337899999999999999999999999998776555554433
Q ss_pred CCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeE
Q 001184 712 ARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQ 791 (1130)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i 791 (1130)
|...+++++|++.=..+++++.||++
T Consensus 649 ------------------------------------------------------H~~avr~Va~H~ryPLfas~sdDgtv 674 (733)
T KOG0650|consen 649 ------------------------------------------------------HEKAVRSVAFHKRYPLFASGSDDGTV 674 (733)
T ss_pred ------------------------------------------------------hhhhhhhhhhccccceeeeecCCCcE
Confidence 55666777777777778888888888
Q ss_pred EeeecCCCCCCCCcccccccccccc-cCC-CCcceeccCCCCCCCc----eeEEEEecCCCEEEEEe-CCeEEEE
Q 001184 792 KLWKWNRTEQNPSGKATAAVAPQHW-QPS-NGLLMTNDVPENAEDV----VPCVALSKNDSYVMSAG-GGKVSLF 859 (1130)
Q Consensus 792 ~iw~~~~~~~~~~~~~~~~~~~~~w-~~~-~~~~~~~~~~~~~~~~----i~~l~~s~dg~~la~~~-dg~i~iw 859 (1130)
.|+--. ++ |+. +..++-.....+|... |..+.|.|..-+|.+++ ||+|++|
T Consensus 675 ~Vfhg~-----------------VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 675 IVFHGM-----------------VYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred EEEeee-----------------eehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 876311 11 111 1112222222345444 88899999999999888 8999998
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-20 Score=198.65 Aligned_cols=288 Identities=18% Similarity=0.251 Sum_probs=209.9
Q ss_pred EEEe--cCCCeEEEEEeCcCeEEEEeCCCCcee-ecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeC
Q 001184 353 MDFH--PFHHTLLVVGCGDGEITLWDVGLRERL-VSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFT 429 (1130)
Q Consensus 353 v~fs--pdg~~llasg~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~ 429 (1130)
+.|+ |+.+++||.+..||.|.++|...-... ....| .....|..+|..+.|-|-...|++++.
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~l--------------k~~~aH~nAifDl~wapge~~lVsasG 120 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQL--------------KKPLAHKNAIFDLKWAPGESLLVSASG 120 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhh--------------cccccccceeEeeccCCCceeEEEccC
Confidence 4444 445578999999999999998754332 11112 235689999999999996678999999
Q ss_pred CCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCC-------------------
Q 001184 430 KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGR------------------- 488 (1130)
Q Consensus 430 d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~------------------- 488 (1130)
|.++++||++++++.... .+.||.+.|.+++|.|++.. .+++|+.||.|.||| .++.
T Consensus 121 DsT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~pt 198 (720)
T KOG0321|consen 121 DSTIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPT 198 (720)
T ss_pred Cceeeeeeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCC
Confidence 999999999998876543 47899999999999999887 899999999999999 3220
Q ss_pred -------eeeEecCCCcCEEE----EeecccCCccEEEEEec-CCcEEEEEccCCcceee--------ecCC---CccEE
Q 001184 489 -------KLFQFEGHEAPVYS----VCPHQKENIHFIFSTAV-DGKIKAWLYDNVGSRVD--------YDAP---GLWCT 545 (1130)
Q Consensus 489 -------~~~~~~~h~~~v~~----~~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~--------~~~~---~~~v~ 545 (1130)
.+.....|...|.+ +.| .|...|++++. |+.|+|||++....... +..+ ...+.
T Consensus 199 pskp~~kr~~k~kA~s~ti~ssvTvv~f---kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~ 275 (720)
T KOG0321|consen 199 PSKPLKKRIRKWKAASNTIFSSVTVVLF---KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQV 275 (720)
T ss_pred CCchhhccccccccccCceeeeeEEEEE---eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeE
Confidence 01111233334433 433 45578888887 99999999987654432 1222 23577
Q ss_pred EEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc--eeEEEecccCceeE-EEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 001184 546 TMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA--LKRTYIGFRKKSAG-VVQFDTTRNRILAAGEDNQIKFWDMDNVNM 622 (1130)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 622 (1130)
++.....|.+|++.+. |+.|+.|++.+.. ++..+.++....+. .-..+|++.++++|+.|...++|.+.+-+.
T Consensus 276 nL~lDssGt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~ 351 (720)
T KOG0321|consen 276 NLILDSSGTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA 351 (720)
T ss_pred EEEecCCCCeEEEEec----CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC
Confidence 8888888888877765 9999999987633 34555554433332 245789999999999999999999987654
Q ss_pred e-EEEeccCCCCCcceEEEcCC-CCEEEEEeCCCcEEEEEcCCCc
Q 001184 623 L-TSTEAEGGLPSLPRLRFNKE-GNLLVVTTADQGIKILANADGL 665 (1130)
Q Consensus 623 ~-~~~~~~~~~~~i~~v~~s~~-~~~l~~~~~dg~i~iw~~~~~~ 665 (1130)
- ..+. ++...|++++|.|. -.-++++++|..++||++.++.
T Consensus 352 ~~~~l~--Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 352 PPALLL--GHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred Chhhhh--CcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 3 2333 33447899999873 2346777999999999997763
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-21 Score=210.74 Aligned_cols=247 Identities=14% Similarity=0.259 Sum_probs=194.8
Q ss_pred CEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC-CCCEEEEE
Q 001184 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNFIGVA 427 (1130)
Q Consensus 349 ~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~las~ 427 (1130)
.+..|+|+.....+||+++..|.|.+||+... ++.+ +...+..|+..|+++.|++ ...+|++|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~--~rnk--------------~l~~f~EH~Rs~~~ldfh~tep~iliSG 152 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKS--IRNK--------------LLTVFNEHERSANKLDFHSTEPNILISG 152 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCcc--ccch--------------hhhHhhhhccceeeeeeccCCccEEEec
Confidence 55667888655568999999999999999762 1110 1125789999999999998 56789999
Q ss_pred eCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCeeeEecCCCcCEEEEee
Q 001184 428 FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPVYSVCP 505 (1130)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~~~~~~h~~~v~~~~~ 505 (1130)
+.||+|++||++..+... ++.+....|.+++|+|.... .++++.+.|.+++|| ...++...+..|.++|.++.|
T Consensus 153 SQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nw 228 (839)
T KOG0269|consen 153 SQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNW 228 (839)
T ss_pred CCCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEEEee
Confidence 999999999999876444 56678889999999997655 899999999999999 556778889999999999999
Q ss_pred cccCCccEEEEEecCCcEEEEEccCCcceeeecC-CCccEEEEEEecCCCeE-EEeeecCCCCcEEEEeeCCCCce-eEE
Q 001184 506 HQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA-PGLWCTTMLYSADGSRL-FSCGTSKEGDSHLVEWNESEGAL-KRT 582 (1130)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l-~~~~~~~~~~~~i~~wd~~~~~~-~~~ 582 (1130)
+| ++.+|+|||.|++|+|||+........... ...++..+.|-|+..+. ++++. -.+..|++||++..-+ ..+
T Consensus 229 hP--nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsm--v~dtsV~VWDvrRPYIP~~t 304 (839)
T KOG0269|consen 229 HP--NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSM--VVDTSVHVWDVRRPYIPYAT 304 (839)
T ss_pred cC--CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhc--cccceEEEEeecccccccee
Confidence 87 668999999999999999986555443333 34589999999988764 44443 3478999999987544 456
Q ss_pred EecccCceeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCC
Q 001184 583 YIGFRKKSAGVVQFDT-TRNRILAAGEDNQIKFWDMDNV 620 (1130)
Q Consensus 583 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~ 620 (1130)
+..|.+ .++.++|.. |...+.+++.||.|..-..+++
T Consensus 305 ~~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 305 FLEHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eeccCc-cccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 777665 788888865 3457888999998876655544
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=183.39 Aligned_cols=302 Identities=18% Similarity=0.232 Sum_probs=215.4
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
...+|..+.|.+++...+|||+.|..|+||-++.+..-... . ...-...+..|..+|+++.|+|+|..||
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~-~---------~V~y~s~Ls~H~~aVN~vRf~p~gelLA 81 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD-M---------KVEYLSSLSRHTRAVNVVRFSPDGELLA 81 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc-e---------eEEEeecccCCcceeEEEEEcCCcCeee
Confidence 46799999999998756999999999999999876543210 0 0112236889999999999999999999
Q ss_pred EEeCCCeEEEEEec--------C-----CccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeee
Q 001184 426 VAFTKHLIHLYTYQ--------G-----SNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLF 491 (1130)
Q Consensus 426 s~~~d~~i~vwd~~--------~-----~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~ 491 (1130)
+|+++|.|.+|... + .+.....+.+.+|...|..++|+||+. ++++++.|+.+++|| ..|..+.
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLLA 159 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeEe
Confidence 99999999999876 2 111233456789999999999999999 899999999999999 9999999
Q ss_pred EecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeec-------------------CCC----ccEEEEE
Q 001184 492 QFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD-------------------APG----LWCTTML 548 (1130)
Q Consensus 492 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-------------------~~~----~~v~~~~ 548 (1130)
.+.+|...|..++|.|.. +++++-+.|...+.+.+...+...... .|. .-...++
T Consensus 160 ~~~dh~~yvqgvawDpl~--qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRls 237 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWDPLN--QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLS 237 (434)
T ss_pred eccccccccceeecchhh--hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcc
Confidence 999999999999996644 788888888866666554322221110 011 1245678
Q ss_pred EecCCCeEEEeeecCC----C-CcEEEEeeCCC-CceeEEEecccCceeEEEEEcC------------------CCCEEE
Q 001184 549 YSADGSRLFSCGTSKE----G-DSHLVEWNESE-GALKRTYIGFRKKSAGVVQFDT------------------TRNRIL 604 (1130)
Q Consensus 549 ~s~~~~~l~~~~~~~~----~-~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~------------------~~~~l~ 604 (1130)
|+|+|.++++...--. . -+..++++-.. .++...+.+... ....+.|+| -+-.++
T Consensus 238 fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k-~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa 316 (434)
T KOG1009|consen 238 FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK-PALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA 316 (434)
T ss_pred cCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc-ceEEEEeeeeEEEeccccccccccccccceEEE
Confidence 9999999887542100 0 23345555332 222333333222 222333322 222344
Q ss_pred EEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 605 AAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 605 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
.++ ...|+|||.++-.++.....- |-..|+.++|++||..|++.+.||...+..++..
T Consensus 317 iAt-~~svyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 317 IAT-KNSVYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred Eee-cceEEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 444 568999999998877765432 3348999999999999999999999888777655
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-19 Score=173.61 Aligned_cols=264 Identities=13% Similarity=0.234 Sum_probs=195.7
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC--CCC
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP--DGN 422 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~ 422 (1130)
+|.+-|.|+.|.+-|++ +|+|+.|++|+|||...+.-. |.. ....+.|.+.|..+.|-+ -|+
T Consensus 11 ~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~-------W~~--------Ts~Wrah~~Si~rV~WAhPEfGq 74 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGT-------WSC--------TSSWRAHDGSIWRVVWAHPEFGQ 74 (361)
T ss_pred CCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCc-------eEE--------eeeEEecCCcEEEEEecCccccc
Confidence 58999999999999997 899999999999997543321 111 124678999999999976 599
Q ss_pred EEEEEeCCCeEEEEEecC------CccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCe------
Q 001184 423 FIGVAFTKHLIHLYTYQG------SNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRK------ 489 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~------~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~------ 489 (1130)
.+|+++.|+++.||.-.. +..-....++......|+++.|.|-...+.+++++.||.+|||+ .+-.-
T Consensus 75 vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L 154 (361)
T KOG2445|consen 75 VVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL 154 (361)
T ss_pred eEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchh
Confidence 999999999999998631 11222334566778899999999988888999999999999999 43221
Q ss_pred eeEec-------CCCcCEEEEeecccCC-ccEEEEEecC-----CcEEEEEccCCcc----eeeecCCCccEEEEEEecC
Q 001184 490 LFQFE-------GHEAPVYSVCPHQKEN-IHFIFSTAVD-----GKIKAWLYDNVGS----RVDYDAPGLWCTTMLYSAD 552 (1130)
Q Consensus 490 ~~~~~-------~h~~~v~~~~~~~~~~-~~~l~s~s~d-----g~i~vwd~~~~~~----~~~~~~~~~~v~~~~~s~~ 552 (1130)
...+. .+..+..|+.|+++.- ..+|+.|+.+ +.++||....... ..++..++.+|+.++|.|+
T Consensus 155 q~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 155 QHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred hhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 22222 4677788888886543 2466666655 4889998766552 2367788999999999995
Q ss_pred C----CeEEEeeecCCCCcEEEEeeCCCC--------------------ceeEEEecccCceeEEEEEcCCCCEEEEEeC
Q 001184 553 G----SRLFSCGTSKEGDSHLVEWNESEG--------------------ALKRTYIGFRKKSAGVVQFDTTRNRILAAGE 608 (1130)
Q Consensus 553 ~----~~l~~~~~~~~~~~~i~~wd~~~~--------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 608 (1130)
- ..||+++. || |+||.++.. +.+..+.+|.. .+..+.|+-.|..|.+.|.
T Consensus 235 ~Gr~y~~lAvA~k----Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 235 IGRSYHLLAVATK----DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG-EVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred cCCceeeEEEeec----Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-ceEEEEEeeeeeEEeecCC
Confidence 3 35677664 77 999998731 12344556554 8999999999999999999
Q ss_pred CCcEEEEeCCCC---ceeEEEeccC
Q 001184 609 DNQIKFWDMDNV---NMLTSTEAEG 630 (1130)
Q Consensus 609 dg~i~vwd~~~~---~~~~~~~~~~ 630 (1130)
||.||+|...-. ++...+...+
T Consensus 309 DG~VRLWkany~n~~kC~sv~~~e~ 333 (361)
T KOG2445|consen 309 DGCVRLWKANYNNLWKCTSVLKAEG 333 (361)
T ss_pred CceeeehhhhhhhhheeeeEEeccC
Confidence 999999986532 3444444443
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-19 Score=174.11 Aligned_cols=255 Identities=11% Similarity=0.176 Sum_probs=192.6
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCc-cceeeeeeecCCCCeeEEEEecC--CCceEEEEEcCCCcE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSN-DLCQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLI 480 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~-~~~~~~~~~~h~~~V~~i~~s~d--~~~l~l~s~s~d~~v 480 (1130)
+-.+|..-|.++.|.+-|+++|+|+.|++|+|||..... ........+.|.+.|..+.|.+- |+ .+++++.|+++
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv 85 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTV 85 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCce
Confidence 355899999999999999999999999999999964432 24445567899999999999864 45 89999999999
Q ss_pred EEEec-C------C---CeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCccee------eec------
Q 001184 481 RVWDL-S------G---RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV------DYD------ 538 (1130)
Q Consensus 481 ~iwd~-~------~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~------~~~------ 538 (1130)
.||.. . | ....++......|+.++|.|..-|-.+++++.||.+|||+.-...... ++.
T Consensus 86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 99983 1 1 123456678889999999999989999999999999999865433222 111
Q ss_pred -CCCccEEEEEEecC---CCeEEEeeec-CCCCcEEEEeeCCCCc----eeEEEecccCceeEEEEEcCCC----CEEEE
Q 001184 539 -APGLWCTTMLYSAD---GSRLFSCGTS-KEGDSHLVEWNESEGA----LKRTYIGFRKKSAGVVQFDTTR----NRILA 605 (1130)
Q Consensus 539 -~~~~~v~~~~~s~~---~~~l~~~~~~-~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~~----~~l~~ 605 (1130)
.+..+..|+.|+|. ..+|++++.+ ....+.++||....+. .+..+.+|.+ +|+.++|.|.- ..|++
T Consensus 166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wAPn~Gr~y~~lAv 244 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWAPNIGRSYHLLAV 244 (361)
T ss_pred ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeeccccCCceeeEEE
Confidence 23446788999874 4567777632 1123477777654332 3456677666 89999999975 37889
Q ss_pred EeCCCcEEEEeCCCCc-----------------eeEEE-eccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001184 606 AGEDNQIKFWDMDNVN-----------------MLTST-EAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANA 662 (1130)
Q Consensus 606 ~~~dg~i~vwd~~~~~-----------------~~~~~-~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~ 662 (1130)
++.|| |+||++.... .+..+ ....|.+.|..+.|+-.|..|++.+.||.||+|...
T Consensus 245 A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 245 ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 99999 9999987311 12222 234566689999999999999999999999999753
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=185.47 Aligned_cols=253 Identities=13% Similarity=0.161 Sum_probs=193.4
Q ss_pred EEEEEEcC-------CCCEEEEEeCCCeEEEEEecCCccceeee------------------eeecCCCCeeEEEEecCC
Q 001184 412 VSRVAWSP-------DGNFIGVAFTKHLIHLYTYQGSNDLCQSL------------------EIDAHVGGVNDLAFSYPN 466 (1130)
Q Consensus 412 V~~v~~sp-------dg~~las~~~d~~i~vwd~~~~~~~~~~~------------------~~~~h~~~V~~i~~s~d~ 466 (1130)
-.|++|-. -|+|+|.|+.|..|.|||+.--..+.+.. ...+|+..|.+++|+..-
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 35666642 36799999999999999985322221111 234799999999999988
Q ss_pred CceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEE
Q 001184 467 KQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCT 545 (1130)
Q Consensus 467 ~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~ 545 (1130)
+. +|+|||.|.+|++|| .+|++..++..|.+.|.++.|++.. ..+|++|+.|++|.+.|.+........-.-.+.|.
T Consensus 256 ~n-VLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VE 333 (463)
T KOG0270|consen 256 RN-VLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVE 333 (463)
T ss_pred ce-eEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCC-ceEEEeccccceEEeeeccCccccCceEEeccceE
Confidence 77 899999999999999 9999999999999999999999854 47999999999999999985333222112234588
Q ss_pred EEEEecCCCeEEEeeecCCCCcEEEEeeCCCC-ceeEEEecccCceeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCcee
Q 001184 546 TMLYSADGSRLFSCGTSKEGDSHLVEWNESEG-ALKRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVNML 623 (1130)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~ 623 (1130)
.++|.|.....+.++. .+|.|+-+|++.. +++.++..|.+ .|.++++++.- .++++++.|+.|++|++.....-
T Consensus 334 kv~w~~~se~~f~~~t---ddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVST---DDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred EEEecCCCceeEEEec---CCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence 9999998877766664 3899999999875 89999999877 89999998765 47888999999999998765443
Q ss_pred EEEeccCCCCCcceEEEcCCC-CEEEEEeCCCcEEEEEcCCCchhhhh
Q 001184 624 TSTEAEGGLPSLPRLRFNKEG-NLLVVTTADQGIKILANADGLRALRA 670 (1130)
Q Consensus 624 ~~~~~~~~~~~i~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~ 670 (1130)
.........+...|.++.|+- -.++.|+..+.+++||+.+.....+.
T Consensus 410 ~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ka 457 (463)
T KOG0270|consen 410 SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRKA 457 (463)
T ss_pred ccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHHHh
Confidence 222222222345677777753 46788888889999999887544443
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.4e-21 Score=206.99 Aligned_cols=233 Identities=11% Similarity=0.198 Sum_probs=207.9
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
|...|.|+..-..++ ++++|+.|..+.+|.+..-..+. .+.+|+..|.|+.|+++..+|+
T Consensus 27 hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~-------------------S~~~hespIeSl~f~~~E~Lla 86 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAIT-------------------SLTGHESPIESLTFDTSERLLA 86 (825)
T ss_pred hhhhhceeeeeccce-eeccCCCceeeccccccCCchhh-------------------eeeccCCcceeeecCcchhhhc
Confidence 788888888866666 79999999999999986544332 3789999999999999999999
Q ss_pred EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEe
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVC 504 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~ 504 (1130)
.|+.+|+|++||++.++.++ ++.||...+.++.|+|-+. +.++|+.|+.+++|| ....|.+.+.+|...|..+.
T Consensus 87 agsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR 161 (825)
T ss_pred ccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence 99999999999999988776 7899999999999999999 789999999999999 77889999999999999999
Q ss_pred ecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEe
Q 001184 505 PHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYI 584 (1130)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1130)
|. ++|.++++++.|.++++||...++....|..|...+.++.|.|..-+++.|+. ++.+.+||+++.+.+....
T Consensus 162 ls--P~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~I~s~~ 235 (825)
T KOG0267|consen 162 LS--PDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEVISSGK 235 (825)
T ss_pred ec--CCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEEeeccC
Confidence 95 56689999999999999999999999999999999999999999988999886 9999999999988887777
Q ss_pred cccCceeEEEEEcCCCCEEEEEeCCC
Q 001184 585 GFRKKSAGVVQFDTTRNRILAAGEDN 610 (1130)
Q Consensus 585 ~~~~~~v~~~~~~~~~~~l~~~~~dg 610 (1130)
.... .|.+..|+|++..+++|....
T Consensus 236 ~~~~-~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 236 PETD-GVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred CccC-CceeeeecCCceeeecCchhh
Confidence 6544 799999999999888886543
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=198.22 Aligned_cols=297 Identities=13% Similarity=0.156 Sum_probs=222.8
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC-CCCEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNFI 424 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l 424 (1130)
-+....++...++-..+ +.++. ....||.++...... .+.+.. ...+ .-.-.+..|.|+. +.++|
T Consensus 38 ~k~~~nAIs~nr~~~qi-v~AGr-s~lklyai~~~~~~~--~~~~~~-----k~kq-----n~~~S~~DVkW~~~~~NlI 103 (839)
T KOG0269|consen 38 LKAKANAISVNRDINQI-VVAGR-SLLKLYAINPNDFSE--KCNHRF-----KTKQ-----NKFYSAADVKWGQLYSNLI 103 (839)
T ss_pred cccccceEeecCCccee-EEecc-cceeeEeeCcccCCc--ceeeec-----cccc-----ceeeehhhcccccchhhhh
Confidence 34566777778887764 44443 367777775433211 111100 0000 0112345678875 57899
Q ss_pred EEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEE
Q 001184 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1130)
|+++..|.|.+||+.....-+....+..|...|.++.|++-..+ +|++||.||+|++|| ...+-..++.+....|..+
T Consensus 104 AT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV 182 (839)
T KOG0269|consen 104 ATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDV 182 (839)
T ss_pred eeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhhhce
Confidence 99999999999999763222333367899999999999998877 899999999999999 7777888888999999999
Q ss_pred eecccCCccEEEEEecCCcEEEEEccCCc-ceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEE
Q 001184 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVG-SRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582 (1130)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1130)
.|+|.. +..++++.+.|.+++||++... ....+..|.++|.++.|+|++.+||+||. |++|+|||..+++....
T Consensus 183 ~fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGR----DK~vkiWd~t~~~~~~~ 257 (839)
T KOG0269|consen 183 KFSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGR----DKMVKIWDMTDSRAKPK 257 (839)
T ss_pred eeccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCC----CccEEEEeccCCCccce
Confidence 999865 5799999999999999998754 45578899999999999999999999997 99999999987766555
Q ss_pred EecccCceeEEEEEcCCCCE-EEEEe--CCCcEEEEeCCCCc-eeEEEeccCCCCCcceEEEcC-CCCEEEEEeCCCcEE
Q 001184 583 YIGFRKKSAGVVQFDTTRNR-ILAAG--EDNQIKFWDMDNVN-MLTSTEAEGGLPSLPRLRFNK-EGNLLVVTTADQGIK 657 (1130)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~-l~~~~--~dg~i~vwd~~~~~-~~~~~~~~~~~~~i~~v~~s~-~~~~l~~~~~dg~i~ 657 (1130)
..-+...++.++.|-|+..+ |++++ .|-.|+|||++-.- +..++..|.. .++.++|.. |...+.+++.||++.
T Consensus 258 ~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~--~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 258 HTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTD--SVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred eEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCc--cccceeccCCCceeeEeecCccHHH
Confidence 55556668999999998864 55544 57889999997543 4445555443 688899976 566788899999887
Q ss_pred EEEcCCC
Q 001184 658 ILANADG 664 (1130)
Q Consensus 658 iw~~~~~ 664 (1130)
.-.+++.
T Consensus 336 qh~~kna 342 (839)
T KOG0269|consen 336 QHLFKNA 342 (839)
T ss_pred Hhhhhcc
Confidence 6555554
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=171.33 Aligned_cols=289 Identities=17% Similarity=0.244 Sum_probs=210.0
Q ss_pred cCCCCEEEEEEec----CCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC
Q 001184 345 HQGSSVVSMDFHP----FHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1130)
Q Consensus 345 ~h~~~V~~v~fsp----dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 420 (1130)
.|+.+|..++|.+ +...++|+.+. ..+.||......-+.. +|...-..|......++|+-|
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~--------------lq~y~D~d~~Esfytcsw~yd 100 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRL--------------LQSYADEDHDESFYTCSWSYD 100 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceee--------------eeeccCCCCCcceEEEEEEec
Confidence 4889999999985 22235666554 4889998865432220 111122357888899999875
Q ss_pred C----CEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEec-
Q 001184 421 G----NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFE- 494 (1130)
Q Consensus 421 g----~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~- 494 (1130)
. -+||.|+.-|.|+|.|+.++++.. .+.+|...|+.+.|.|+..+ +++++|.|.+||+|| .+..++..|-
T Consensus 101 ~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~VfGG 176 (385)
T KOG1034|consen 101 SNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVAVFGG 176 (385)
T ss_pred CCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEEEecc
Confidence 3 389999999999999999988665 67899999999999999877 799999999999999 8888988764
Q ss_pred --CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCccee----------------------------eecCCCccE
Q 001184 495 --GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV----------------------------DYDAPGLWC 544 (1130)
Q Consensus 495 --~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~----------------------------~~~~~~~~v 544 (1130)
||.+.|.++.|+. ++.+|++++.|.++++|++...+-.. +...|...|
T Consensus 177 ~egHrdeVLSvD~~~--~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV 254 (385)
T KOG1034|consen 177 VEGHRDEVLSVDFSL--DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV 254 (385)
T ss_pred cccccCcEEEEEEcC--CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence 7999999999965 45699999999999999988422111 011122233
Q ss_pred EEEEEecCCCeEEEeeecCCCCcEEEEeeC-CCCce-------------eEEEecccCceeE--EEEEcCCCCEEEEEeC
Q 001184 545 TTMLYSADGSRLFSCGTSKEGDSHLVEWNE-SEGAL-------------KRTYIGFRKKSAG--VVQFDTTRNRILAAGE 608 (1130)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~-~~~~~-------------~~~~~~~~~~~v~--~~~~~~~~~~l~~~~~ 608 (1130)
.|+.|- |+++++-+. ++.|..|.. +-++. +..+.-... .+. ..+|.|-++.|+.|..
T Consensus 255 DCvrw~--gd~ilSksc----enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c-~iWfirf~~d~~~~~la~gnq 327 (385)
T KOG1034|consen 255 DCVRWF--GDFILSKSC----ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC-DIWFIRFAFDPWQKMLALGNQ 327 (385)
T ss_pred HHHHHH--hhheeeccc----CceEEEEecchhhhhhhccCCCccceeeeeEeccCcc-ceEEEEEeecHHHHHHhhccC
Confidence 333333 466776654 779999987 21211 111211111 222 2456677889999999
Q ss_pred CCcEEEEeCCCCcee--EEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 609 DNQIKFWDMDNVNML--TSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 609 dg~i~vwd~~~~~~~--~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
.|.|++||+++.++. .++........|...+|+.||..|+..++|++|.-||.
T Consensus 328 ~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 328 SGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 999999999987653 33444444557899999999999999999999999985
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.8e-18 Score=167.80 Aligned_cols=300 Identities=13% Similarity=0.203 Sum_probs=204.0
Q ss_pred CCCccceEEEEEec----cCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEE
Q 001184 764 TDSASKVARLLYTN----SGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCV 839 (1130)
Q Consensus 764 ~~~~~~i~~l~~s~----~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l 839 (1130)
..|...|..++|.+ +...+++......+.+|....... -.++.......+......+
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~-------------------ir~lq~y~D~d~~Esfytc 95 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGG-------------------IRLLQSYADEDHDESFYTC 95 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccc-------------------eeeeeeccCCCCCcceEEE
Confidence 34778888888874 334455555566778886543210 0111111222366666777
Q ss_pred EEecC----CCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEE-
Q 001184 840 ALSKN----DSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKL- 913 (1130)
Q Consensus 840 ~~s~d----g~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l- 913 (1130)
+|+-| .-++|+++ -|.|+|.|+.++++...+.+|...|+.+.+.|+..++|++++.|.+|++|++++..++..+
T Consensus 96 sw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG 175 (385)
T KOG1034|consen 96 SWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG 175 (385)
T ss_pred EEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec
Confidence 77543 33666666 7999999999999999999999999999999988899999999999999999999999886
Q ss_pred --ecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEe-----------ccC--C---------CCCCCeE
Q 001184 914 --KGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQ-----------LPA--G---------KLPVGET 969 (1130)
Q Consensus 914 --~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~-----------~~~--~---------~~~~~v~ 969 (1130)
.+|.+.|.++.|+++|.+++|+|.|.+|++|++...+........ .+. . -+...|.
T Consensus 176 G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 176 GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence 579999999999999999999999999999999853321111000 000 0 0112222
Q ss_pred EEEEcCCCcEEEE-EcCCcEEEEEC-CCceeeeeeecC----------CCCCCCeEEEEEC--CCCCEEEEEeCCCcEEE
Q 001184 970 RVQFHSDQVRLLV-NHETQLAIYDG-SKMECIRQWVPQ----------DVLSSPISSAAYS--CNSQLIYATFTDGSIGV 1035 (1130)
Q Consensus 970 ~~~~s~d~~~l~~-~~d~~i~v~d~-~~~~~~~~~~~~----------~~~~~~v~~v~~s--~dg~~l~t~~~Dg~i~v 1035 (1130)
++.|- |.++++ +-++.|..|.. +-++.+....+. ......|+-+.|+ |-+++||.|...|.|++
T Consensus 256 Cvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~v 333 (385)
T KOG1034|consen 256 CVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYV 333 (385)
T ss_pred HHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEE
Confidence 33332 456666 67889999987 222221111111 1113456666554 55889999999999999
Q ss_pred EeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 001184 1036 FDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEP 1092 (1130)
Q Consensus 1036 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~ 1092 (1130)
||++..+....-.... +.....+-..+|+. |+.+|+...+|++|.=||.
T Consensus 334 wdL~~~ep~~~ttl~~-------s~~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 334 WDLDNNEPPKCTTLTH-------SKSGSTVRQTSFSR-DGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred EECCCCCCccCceEEe-------ccccceeeeeeecc-cCcEEEEEeCCCcEEEEEe
Confidence 9999887642221111 11223344456665 6889999999999988875
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-18 Score=178.03 Aligned_cols=207 Identities=15% Similarity=0.229 Sum_probs=166.1
Q ss_pred eeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecC-----CCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcE
Q 001184 449 EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS-----GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKI 523 (1130)
Q Consensus 449 ~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i 523 (1130)
...-+.++|++++|+|....-++++|+.-|.|-+||.. ...+..+..|.++|.++.|+|... ..+++.|.||+|
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~-s~i~ssSyDGti 259 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT-SQIYSSSYDGTI 259 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh-hheeeeccCcee
Confidence 45678899999999998774489999999999999952 224677889999999999998655 678899999999
Q ss_pred EEEEccCCcceeeecC--CCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCce-eEEEecccCceeEEEEEcCCC
Q 001184 524 KAWLYDNVGSRVDYDA--PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL-KRTYIGFRKKSAGVVQFDTTR 600 (1130)
Q Consensus 524 ~vwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~ 600 (1130)
++-|++.......+.. ....+.++.|+.+...++.+.. -|.+.+||.+++.. ...+.-|.. .|..++++|..
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~----~G~f~~iD~R~~~s~~~~~~lh~k-KI~sv~~NP~~ 334 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDN----VGNFNVIDLRTDGSEYENLRLHKK-KITSVALNPVC 334 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeec----ccceEEEEeecCCccchhhhhhhc-ccceeecCCCC
Confidence 9999987665544444 5557888999998888888864 66899999988765 444455544 89999999987
Q ss_pred C-EEEEEeCCCcEEEEeCCCCceeE--EEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 601 N-RILAAGEDNQIKFWDMDNVNMLT--STEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 601 ~-~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
. ++++++.|++.+|||++...... .+..-.|...|.++.|||.+..|++.+.|..|+|||.
T Consensus 335 p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 335 PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDS 398 (498)
T ss_pred chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeec
Confidence 5 78889999999999998644332 2333345558999999998888999999999999996
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.1e-20 Score=208.76 Aligned_cols=251 Identities=16% Similarity=0.247 Sum_probs=203.0
Q ss_pred CccEEEEEEcCCCCE----EEEEeCCCeEEEEEecC---CccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001184 409 SISVSRVAWSPDGNF----IGVAFTKHLIHLYTYQG---SNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR 481 (1130)
Q Consensus 409 ~~~V~~v~~spdg~~----las~~~d~~i~vwd~~~---~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~ 481 (1130)
....+.++|.+.|.. ||.|..||.|.+||... +.......+...|.+.|..+.|++.... +|++|+.||.|.
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~ 142 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEIL 142 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEE
Confidence 456789999998776 89999999999999865 4444444567889999999999998876 799999999999
Q ss_pred EEe-cCCCeeeEec--CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCc--cEEEEEEecCCCeE
Q 001184 482 VWD-LSGRKLFQFE--GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL--WCTTMLYSADGSRL 556 (1130)
Q Consensus 482 iwd-~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l 556 (1130)
||| .+-+.-..+. .....|.+++|+.. ...+|++++.+|++.|||++..+.+..+..+.. .+..++|+|++..-
T Consensus 143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTq 221 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRK-VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQ 221 (1049)
T ss_pred EeccCCcCCCCCCCCCCCcccceEeccchh-hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCcee
Confidence 999 4333333331 24578999999753 447899999999999999999988887766554 57899999987654
Q ss_pred EEeeecCCCCcEEEEeeCCCC-ceeEEEecccCceeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCC
Q 001184 557 FSCGTSKEGDSHLVEWNESEG-ALKRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPS 634 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 634 (1130)
+....+.+....|.+||++.. ..++.+.+|.. .+.++.|++.+ .++++++.|+.|.+|+.++++.+..+...+. .
T Consensus 222 l~~As~dd~~PviqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n--W 298 (1049)
T KOG0307|consen 222 LLVASGDDSAPVIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN--W 298 (1049)
T ss_pred eeeecCCCCCceeEeecccccCCchhhhccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc--c
Confidence 433335667889999998764 45677777666 78899999877 7899999999999999999999999887544 7
Q ss_pred cceEEEcCCCC-EEEEEeCCCcEEEEEcCCC
Q 001184 635 LPRLRFNKEGN-LLVVTTADQGIKILANADG 664 (1130)
Q Consensus 635 i~~v~~s~~~~-~l~~~~~dg~i~iw~~~~~ 664 (1130)
+..+.|.|... .++.++-||.|.|+.+...
T Consensus 299 ~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 299 CFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred eeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 89999999554 8899999999999998765
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.6e-16 Score=183.26 Aligned_cols=371 Identities=23% Similarity=0.408 Sum_probs=279.6
Q ss_pred ecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCc-cceeeeeeecCC-CCeeEEEE-ecCCCceEEEEEcCCCcEE
Q 001184 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSN-DLCQSLEIDAHV-GGVNDLAF-SYPNKQLCIVTCGDDKLIR 481 (1130)
Q Consensus 405 ~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~-~~~~~~~~~~h~-~~V~~i~~-s~d~~~l~l~s~s~d~~v~ 481 (1130)
...|...+.++.+.+++..++.++.|+.+.+|+...+. .+. .+.++. ..+..+.+ ++++....+..+..|+.+.
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK---SLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEE---EEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence 55888999999999999999999999999999998875 232 444533 36777777 7777632333345599999
Q ss_pred EEecC--CCeeeEecCCCcCEEEEeecccCCccEEEEEec-CCcEEEEEccCCcceeeecCCCccEEEEEEecCCC-eEE
Q 001184 482 VWDLS--GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV-DGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGS-RLF 557 (1130)
Q Consensus 482 iwd~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~ 557 (1130)
+||.. ......+..|...|..++|++.. ..+++++. |+.+++|+.........+..|...+.+++|+|++. .++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 215 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDG--KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA 215 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCC--CEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEE
Confidence 99944 58888999999999999997655 57788875 99999999998777778888889999999999998 444
Q ss_pred EeeecCCCCcEEEEeeCCCCceeE-EEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce-eEEEeccCCCCCc
Q 001184 558 SCGTSKEGDSHLVEWNESEGALKR-TYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNM-LTSTEAEGGLPSL 635 (1130)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~i 635 (1130)
+++. ++.|.+||...+.... .+.+|.. .. ...|++++.++++++.|+.+++|+...... +..+ ..+...+
T Consensus 216 ~~~~----d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~v 287 (466)
T COG2319 216 SGSS----DGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--SGHSSSV 287 (466)
T ss_pred EecC----CCcEEEEECCCCcEEeeecCCCCc-ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--ecCCccE
Confidence 4343 8899999988888877 6777665 33 338999998999999999999999987665 4444 2334589
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCc
Q 001184 636 PRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPS 715 (1130)
Q Consensus 636 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~ 715 (1130)
.++.|+|++..+++++.|+.+.+|+......... .
T Consensus 288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~-------------------------------------------- 322 (466)
T COG2319 288 LSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS-L-------------------------------------------- 322 (466)
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEE-e--------------------------------------------
Confidence 9999999888888898898899997654410000 0
Q ss_pred ccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeee
Q 001184 716 TILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWK 795 (1130)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~ 795 (1130)
.
T Consensus 323 ----------------------------------------------------------~--------------------- 323 (466)
T COG2319 323 ----------------------------------------------------------T--------------------- 323 (466)
T ss_pred ----------------------------------------------------------e---------------------
Confidence 0
Q ss_pred cCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEE-e-CCeEEEEECCCceeEEEEeCC
Q 001184 796 WNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSA-G-GGKVSLFNMMNFKVMTTFMSP 873 (1130)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~-~-dg~i~iwd~~~~~~~~~~~~~ 873 (1130)
...|...+..+.+.+++..++.+ . |+.+.+|+.............
T Consensus 324 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 370 (466)
T COG2319 324 ---------------------------------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH 370 (466)
T ss_pred ---------------------------------ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC
Confidence 00123345555552222444444 3 677888888777633333222
Q ss_pred CCCeEEEEEeCCCCcEEEE-EeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCC
Q 001184 874 PPASTFLAFHPQDNNIIAI-GMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDT 948 (1130)
Q Consensus 874 ~~~i~~l~~sp~~~~~las-g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~ 948 (1130)
..+..+.+.+ + ..++. +..++.+.+|+............+...+....+++++..+++++.++.+++|+...
T Consensus 371 -~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 371 -SNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred -ceEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 2288899998 7 55554 78999999999999888777766547899999999999999999999999999987
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-18 Score=178.94 Aligned_cols=216 Identities=17% Similarity=0.271 Sum_probs=172.8
Q ss_pred EEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecC
Q 001184 838 CVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGH 916 (1130)
Q Consensus 838 ~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h 916 (1130)
|++......++++|+ .+.|+|||++...+.+.+++|...|+++.+.. ...+||+++..|.|.|..+.++.....|...
T Consensus 84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~ 162 (673)
T KOG4378|consen 84 CVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTID 162 (673)
T ss_pred HHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecC
Confidence 333333447888887 78999999998888899999999999999998 7789999999999999999999888888755
Q ss_pred CCC-eeEEEEccCCC-eEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE--EcCCcEEEEE
Q 001184 917 QKH-ITGLAFSTNLN-ILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV--NHETQLAIYD 992 (1130)
Q Consensus 917 ~~~-V~~l~~s~dg~-~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~--~~d~~i~v~d 992 (1130)
.+. |.-+.|+|..+ +|.+++.+|.|.+||+..... .......|..+...|+|+|....|++ +.|..|.+||
T Consensus 163 sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp-----~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD 237 (673)
T KOG4378|consen 163 SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP-----IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYD 237 (673)
T ss_pred CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc-----ccchhhhccCCcCcceecCCccceEEEecccceEEEee
Confidence 454 45889999876 456789999999999987322 22222334478889999998887776 7899999999
Q ss_pred CCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcC
Q 001184 993 GSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHP 1072 (1130)
Q Consensus 993 ~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1072 (1130)
.........+... .+.+.++|+++|.+|++|...|.|..||++..+.-.... +.|...+++++|-|
T Consensus 238 ~~s~~s~~~l~y~----~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~----------sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 238 IRSQASTDRLTYS----HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVR----------SAHDASVTRVAFQP 303 (673)
T ss_pred cccccccceeeec----CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEe----------eecccceeEEEeee
Confidence 9987777766554 589999999999999999999999999999776544443 34555677788777
Q ss_pred C
Q 001184 1073 Q 1073 (1130)
Q Consensus 1073 ~ 1073 (1130)
.
T Consensus 304 s 304 (673)
T KOG4378|consen 304 S 304 (673)
T ss_pred c
Confidence 4
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.7e-16 Score=179.98 Aligned_cols=289 Identities=27% Similarity=0.422 Sum_probs=219.9
Q ss_pred eccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCc-eeecccceeeeccccccceeeeeecCCC-ccEEEEEE-cC
Q 001184 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRE-RLVSKPFKIWDMSNCSMMLQAAIVKDSS-ISVSRVAW-SP 419 (1130)
Q Consensus 343 ~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~-sp 419 (1130)
...|...|.++.|.+.+. .++.++.|+.+.+|+...+. ... .+.++. ..+..+.+ ++
T Consensus 61 ~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~ 120 (466)
T COG2319 61 LRGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIK-------------------SLEGLHDSSVSKLALSSP 120 (466)
T ss_pred eeeccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEE-------------------EEeccCCCceeeEEEECC
Confidence 345899999999999998 57888889999999998876 322 233322 46777777 88
Q ss_pred CCC-EEEEEeC-CCeEEEEEecC-CccceeeeeeecCCCCeeEEEEecCCCceEEEEEcC-CCcEEEEe-cCCCeeeEec
Q 001184 420 DGN-FIGVAFT-KHLIHLYTYQG-SNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD-DKLIRVWD-LSGRKLFQFE 494 (1130)
Q Consensus 420 dg~-~las~~~-d~~i~vwd~~~-~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~-d~~v~iwd-~~~~~~~~~~ 494 (1130)
++. +++..+. |+.+.+||... .... ..+..|...|..++|+|+++ .+++++. |+.+++|+ ..+..+..+.
T Consensus 121 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (466)
T COG2319 121 DGNSILLASSSLDGTVKLWDLSTPGKLI---RTLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTLA 195 (466)
T ss_pred CcceEEeccCCCCccEEEEEecCCCeEE---EEEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEeec
Confidence 888 5555444 99999999987 3322 35788999999999999999 6788875 99999999 6678899999
Q ss_pred CCCcCEEEEeecccCCcc-EEEEEecCCcEEEEEccCCccee-eecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEe
Q 001184 495 GHEAPVYSVCPHQKENIH-FIFSTAVDGKIKAWLYDNVGSRV-DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEW 572 (1130)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1130)
+|...|.+++|.+ ++. .+++++.|+.|++||........ .+..+.... ...|++++.++++++. ++.+++|
T Consensus 196 ~~~~~v~~~~~~~--~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----d~~~~~~ 268 (466)
T COG2319 196 GHTDPVSSLAFSP--DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS----DGTIRLW 268 (466)
T ss_pred cCCCceEEEEEcC--CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC----CCcEEEe
Confidence 9999999999984 444 55566999999999888655555 466666654 3389999988886665 8999999
Q ss_pred eCCCCce-eEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEE-
Q 001184 573 NESEGAL-KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVT- 650 (1130)
Q Consensus 573 d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~- 650 (1130)
+...... ...+.+| ...+.++.|.|++..+++++.|+.+.+|+..+...........+...+..+.+.+++..++.+
T Consensus 269 ~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (466)
T COG2319 269 DLRSSSSLLRTLSGH-SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGG 347 (466)
T ss_pred eecCCCcEEEEEecC-CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEee
Confidence 9987665 4444444 448888999998888888988999999999888776666522222257888883332455555
Q ss_pred eCCCcEEEEEcCCC
Q 001184 651 TADQGIKILANADG 664 (1130)
Q Consensus 651 ~~dg~i~iw~~~~~ 664 (1130)
..|+.+.+|+....
T Consensus 348 ~~d~~~~~~~~~~~ 361 (466)
T COG2319 348 SDDGTIRLWDLRTG 361 (466)
T ss_pred cCCCcEEeeecCCC
Confidence 57778888876543
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.6e-18 Score=167.52 Aligned_cols=407 Identities=12% Similarity=0.153 Sum_probs=250.4
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeE
Q 001184 414 RVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQ 492 (1130)
Q Consensus 414 ~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~ 492 (1130)
-++|||+|+++|+++.- .+.|-|..+-+..+ +...-+.|..+.|..|.-+ .+.....|+.|.+|+ ..-+--..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~q----lf~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQ----LFLCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHH----HHHHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 47899999999999765 68888887754332 1122456889999998876 677888999999999 66677778
Q ss_pred ecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEe
Q 001184 493 FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEW 572 (1130)
Q Consensus 493 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1130)
+..-..++.+++|+|++. .+|.+...|-+|.+|.+.+..... +......+..++|.|||++.+.++. .|-...+.+.
T Consensus 87 Ideg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sR-rDCkdyv~i~ 163 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSR-RDCKDYVQIS 163 (447)
T ss_pred eccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeec-ccHHHHHHHH
Confidence 888888999999976543 677788889999999998755443 3334455789999999999998874 2222223333
Q ss_pred eCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEE
Q 001184 573 NESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGE--DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVT 650 (1130)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~ 650 (1130)
..+.-.+++.+.-... ..+.+.|+|||+.+++-.. +-.|+.|... -.+..++|+|.+++|++|
T Consensus 164 ~c~~W~ll~~f~~dT~-DltgieWsPdg~~laVwd~~Leykv~aYe~~--------------lG~k~v~wsP~~qflavG 228 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTI-DLTGIEWSPDGNWLAVWDNVLEYKVYAYERG--------------LGLKFVEWSPCNQFLAVG 228 (447)
T ss_pred hhHHHHHHHhcCCCcc-cccCceECCCCcEEEEecchhhheeeeeeec--------------cceeEEEeccccceEEee
Confidence 3333344555554333 5667899999987775322 2223322211 147889999999999999
Q ss_pred eCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCC
Q 001184 651 TADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEK 730 (1130)
Q Consensus 651 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1130)
+.|+.+|+.+--+- ..+..+- |...+...... .+--..+++.
T Consensus 229 syD~~lrvlnh~tW-k~f~efl-hl~s~~dp~~~-----~~~ke~~~~~------------------------------- 270 (447)
T KOG4497|consen 229 SYDQMLRVLNHFTW-KPFGEFL-HLCSYHDPTLH-----LLEKETFSIV------------------------------- 270 (447)
T ss_pred ccchhhhhhceeee-eehhhhc-cchhccCchhh-----hhhhhhcchh-------------------------------
Confidence 99999998764332 1111110 00000000000 0000000000
Q ss_pred cccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccc
Q 001184 731 PRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAA 810 (1130)
Q Consensus 731 ~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 810 (1130)
+.. |. ++.|.|..-- +..+... -.+|....-
T Consensus 271 -----------------------ql~---------~~----cLsf~p~~~~-a~~~~~s-e~~YE~~~~----------- 301 (447)
T KOG4497|consen 271 -----------------------QLL---------HH----CLSFTPTDLE-AHIWEES-ETIYEQQMT----------- 301 (447)
T ss_pred -----------------------hhc---------cc----ccccCCCccc-cCccccc-hhhhhhhhc-----------
Confidence 000 00 0011111000 0000000 000000000
Q ss_pred cccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeC---CeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCC
Q 001184 811 VAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGG---GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDN 887 (1130)
Q Consensus 811 ~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~ 887 (1130)
.+ ....-+.. .+.+ ...-.+.-++||+|..++++-.| +.+.+||++..+....+. ...+|.+..|.| +.
T Consensus 302 -pv---~~~~lkp~-tD~p-nPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~ 373 (447)
T KOG4497|consen 302 -PV---KVHKLKPP-TDFP-NPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GR 373 (447)
T ss_pred -ce---eeecccCC-CCCC-CcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CC
Confidence 00 00000000 0111 24566788999999999999875 669999999877665554 456799999999 66
Q ss_pred cEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCc
Q 001184 888 NIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQ 940 (1130)
Q Consensus 888 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~ 940 (1130)
..|+.......+++|......++.. .+..-.|..+.|.-+|..++-.+.|..
T Consensus 374 prL~vctg~srLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 374 PRLVVCTGKSRLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred ceEEEEcCCceEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCce
Confidence 6677777777799999876555544 333467999999999999999999864
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=174.45 Aligned_cols=250 Identities=18% Similarity=0.252 Sum_probs=187.3
Q ss_pred CCCCceeEEEEecCCCEEEEEe---CCeEEEEECCC----------------ceeEEEEeCCCCCeEEEEEeCCCCcEEE
Q 001184 831 NAEDVVPCVALSKNDSYVMSAG---GGKVSLFNMMN----------------FKVMTTFMSPPPASTFLAFHPQDNNIIA 891 (1130)
Q Consensus 831 ~~~~~i~~l~~s~dg~~la~~~---dg~i~iwd~~~----------------~~~~~~~~~~~~~i~~l~~sp~~~~~la 891 (1130)
.|.+.+..+..++-++-.++++ .|.|+||++.. .+.+.++.+|...=..|+|||.-.-.|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 4677777777777665444443 59999999852 3567778889988999999995444577
Q ss_pred EEeCCCcEEEEEeecCeEE---EEEecCCCCeeEEEEccCC-CeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCC
Q 001184 892 IGMEDSTIQIYNVRVDEVK---TKLKGHQKHITGLAFSTNL-NILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVG 967 (1130)
Q Consensus 892 sg~~dg~v~iwd~~~~~~~---~~l~~h~~~V~~l~~s~dg-~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 967 (1130)
+|.--+.|++|...++.-. ..+.+|+..|-.|+|||.. ..++|||.||+|+|||+..+.+...... ..+...
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~----kAh~sD 304 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST----KAHNSD 304 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe----eccCCc
Confidence 8888899999999887432 3467899999999999974 5889999999999999999754333322 223368
Q ss_pred eEEEEEcCCCcEEEEE-cCCcEEEEECCC---ceeeeeeecCCCCCCCeEEEEECCC-CCEEEEEeCCCcEEEEeCCCcc
Q 001184 968 ETRVQFHSDQVRLLVN-HETQLAIYDGSK---MECIRQWVPQDVLSSPISSAAYSCN-SQLIYATFTDGSIGVFDADSLR 1042 (1130)
Q Consensus 968 v~~~~~s~d~~~l~~~-~d~~i~v~d~~~---~~~~~~~~~~~~~~~~v~~v~~s~d-g~~l~t~~~Dg~i~vwd~~~~~ 1042 (1130)
|..|.|+..-.+|+++ +||+++|||+++ ++.+..+..| ..+|+++.|+|. ...|++++.|..|.+||+..-.
T Consensus 305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H---k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH---KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred eeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEec---cCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 9999999999888884 689999999985 5567777666 899999999984 5588888899999999987432
Q ss_pred c-----------ccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 001184 1043 L-----------RCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEP 1092 (1130)
Q Consensus 1043 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~ 1092 (1130)
- +..+.+.... -|......-.+.|+++-+.+|++.+.|| +.||..
T Consensus 382 D~ee~~~~a~~~L~dlPpQLLF----VHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfkt 437 (440)
T KOG0302|consen 382 DEEEIDQEAAEGLQDLPPQLLF----VHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFKT 437 (440)
T ss_pred ChhhhccccccchhcCCceeEE----EecchhHhhhheeccCCCCeEEEecccc-eeEEEe
Confidence 2 1111111110 1222233446889999999999999999 667754
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-18 Score=167.28 Aligned_cols=287 Identities=15% Similarity=0.217 Sum_probs=207.8
Q ss_pred EEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEc-------CCCC
Q 001184 350 VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS-------PDGN 422 (1130)
Q Consensus 350 V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-------pdg~ 422 (1130)
...+.|||||.. |.+-+.|..+++|++-..-.-....-.. ..+++..+--.....|...+|- |+..
T Consensus 52 ~kgckWSPDGSc-iL~~sedn~l~~~nlP~dlys~~~~~~~------~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~ 124 (406)
T KOG2919|consen 52 LKGCKWSPDGSC-ILSLSEDNCLNCWNLPFDLYSKKADGPL------NFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN 124 (406)
T ss_pred hccceeCCCCce-EEeecccCeeeEEecChhhcccCCCCcc------ccccceeEEeccCCEEEEEEeeeccccCCCccc
Confidence 346899999995 6777889999999985322111000000 0001111111234567777775 6778
Q ss_pred EEEEEeCCCeEEEEEecCCccceeeeeeecCCC---CeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCee--eEe--
Q 001184 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVG---GVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKL--FQF-- 493 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~---~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~--~~~-- 493 (1130)
++|+.+.+.-|++||.-+|+... ......|.. +..+++|+|||. .|+ ++..+.|+++| ..|+.- ...
T Consensus 125 l~a~ssr~~PIh~wdaftG~lra-Sy~~ydh~de~taAhsL~Fs~DGe--qlf-aGykrcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRA-SYRAYDHQDEYTAAHSLQFSPDGE--QLF-AGYKRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred eeeeccccCceeeeecccccccc-chhhhhhHHhhhhheeEEecCCCC--eEe-ecccceEEEeeccCCCCCCcchhhhh
Confidence 99999999999999999987433 223334544 346899999999 444 45678999999 444422 111
Q ss_pred ---cCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEE
Q 001184 494 ---EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLV 570 (1130)
Q Consensus 494 ---~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1130)
.+..+.|.+++|+|.. ...++.++.-.++-++.-........+.+|.+.|+.+.|.++|+.|++++. .+..|.
T Consensus 201 ~~k~gq~giisc~a~sP~~-~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR---k~dkIl 276 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPMD-SKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR---KDDKIL 276 (406)
T ss_pred cccccccceeeeeeccCCC-CcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccccc---CCCeEE
Confidence 2346788899998854 468999999999999999999999999999999999999999999999975 477899
Q ss_pred EeeCCC-CceeEEEecccCceeEEE--EEcCCCCEEEEEeCCCcEEEEeCCC-CceeEEEeccCCCCCcceEEEcCCCCE
Q 001184 571 EWNESE-GALKRTYIGFRKKSAGVV--QFDTTRNRILAAGEDNQIKFWDMDN-VNMLTSTEAEGGLPSLPRLRFNKEGNL 646 (1130)
Q Consensus 571 ~wd~~~-~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~i~~v~~s~~~~~ 646 (1130)
.||++. +.++..+..|....-..+ ...|++++|++|+.||.|++||++. +..+..+..+.. .++.++++|--.+
T Consensus 277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd--~vNgvslnP~mpi 354 (406)
T KOG2919|consen 277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD--TVNGVSLNPIMPI 354 (406)
T ss_pred EEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc--cccceecCcccce
Confidence 999976 455566666654333333 4568899999999999999999998 776666655544 7899999999888
Q ss_pred EEEEeCC
Q 001184 647 LVVTTAD 653 (1130)
Q Consensus 647 l~~~~~d 653 (1130)
+|+++..
T Consensus 355 latssGq 361 (406)
T KOG2919|consen 355 LATSSGQ 361 (406)
T ss_pred eeeccCc
Confidence 8877654
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-18 Score=176.87 Aligned_cols=271 Identities=11% Similarity=0.144 Sum_probs=201.6
Q ss_pred CeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCC-EEEEEeCCCeEEEEEecCCcc-ceee
Q 001184 370 GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN-FIGVAFTKHLIHLYTYQGSND-LCQS 447 (1130)
Q Consensus 370 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~las~~~d~~i~vwd~~~~~~-~~~~ 447 (1130)
..++|||+...+..... .-......+.++.|+.... .+|+.+.|..+++|.-..... +...
T Consensus 12 d~~kl~D~s~~~~~~~~-----------------~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~ 74 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEY-----------------VHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRV 74 (673)
T ss_pred CceEEeecccccCcccc-----------------ccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCcccee
Confidence 37999999876544310 0011123499999998764 334456788899997654311 1111
Q ss_pred eeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEE
Q 001184 448 LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW 526 (1130)
Q Consensus 448 ~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vw 526 (1130)
....+. .-.|++...... ++++|+..+.|+||| ....+.+.+++|...|+++.++..+ .+|++++..|.|.+.
T Consensus 75 ~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~D--eyiAsvs~gGdiiih 148 (673)
T KOG4378|consen 75 RKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTD--EYIASVSDGGDIIIH 148 (673)
T ss_pred eccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCc--ceeEEeccCCcEEEE
Confidence 122222 233333333334 899999999999999 6555667789999999999986544 799999999999999
Q ss_pred EccCCcceeeecCC-CccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCC-EEE
Q 001184 527 LYDNVGSRVDYDAP-GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN-RIL 604 (1130)
Q Consensus 527 d~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~ 604 (1130)
.+.++.....+... +..|.-+.|+|..+.+++... .+|.|.+||+....++..+...|..+...+||+|... .|+
T Consensus 149 ~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~as---d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~v 225 (673)
T KOG4378|consen 149 GTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIAS---DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLV 225 (673)
T ss_pred ecccCccccceecCCCCeEEEeecccccceeeEeec---cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEE
Confidence 99988887777766 446779999999888776543 2899999999888887777666666888899999775 677
Q ss_pred EEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhh
Q 001184 605 AAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALR 669 (1130)
Q Consensus 605 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 669 (1130)
+.|.|..|++||....+....+.... +...++|+++|.+|+.|...|.|..||+......+.
T Consensus 226 sVG~Dkki~~yD~~s~~s~~~l~y~~---Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~ 287 (673)
T KOG4378|consen 226 SVGYDKKINIYDIRSQASTDRLTYSH---PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVA 287 (673)
T ss_pred EecccceEEEeecccccccceeeecC---CcceeeecCCceEEEeecCCceEEEEecccCCCCce
Confidence 89999999999999877766665433 689999999999999999999999999976643333
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-18 Score=171.55 Aligned_cols=264 Identities=16% Similarity=0.233 Sum_probs=186.4
Q ss_pred ceeeeccCCCCEEEEEEecCCC-eEEEEEeCcCeEEEEeCCCCceee-cccceeeeccccccceeeeeecCCCccEEEEE
Q 001184 339 AVACTMHQGSSVVSMDFHPFHH-TLLVVGCGDGEITLWDVGLRERLV-SKPFKIWDMSNCSMMLQAAIVKDSSISVSRVA 416 (1130)
Q Consensus 339 ~~~~~~~h~~~V~~v~fspdg~-~llasg~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 416 (1130)
.-.....|.+.+.-+.-++-|+ .+.|+=+..|.|.|||+...-... .-.+.+-+ +...+...+.+|...=+.++
T Consensus 143 ~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy~Ld 218 (440)
T KOG0302|consen 143 IEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGYGLD 218 (440)
T ss_pred ccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCccceeee
Confidence 3344456888888888888764 355666788999999985321110 00000000 12223346789999999999
Q ss_pred EcCC-CCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCC---Ceee
Q 001184 417 WSPD-GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG---RKLF 491 (1130)
Q Consensus 417 ~spd-g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~---~~~~ 491 (1130)
|||- --.|++|..-+.|++|...+|.=..-...+.+|+..|.+++|||..+. +|+|||-|++|+||| ..+ .++.
T Consensus 219 WSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~~~ 297 (440)
T KOG0302|consen 219 WSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAAVS 297 (440)
T ss_pred cccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccceeE
Confidence 9993 225778877788999999887543333457789999999999998877 899999999999999 555 3344
Q ss_pred EecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCC---cceeeecCCCccEEEEEEecCCCe-EEEeeecCCCCc
Q 001184 492 QFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV---GSRVDYDAPGLWCTTMLYSADGSR-LFSCGTSKEGDS 567 (1130)
Q Consensus 492 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~~~~~~~ 567 (1130)
+ +.|.+.|+.+.|+... .+|++|+.||+++|||++.. +.+..+..|..+|+++.|+|.... |++++. |.
T Consensus 298 ~-kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~----D~ 370 (440)
T KOG0302|consen 298 T-KAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE----DN 370 (440)
T ss_pred e-eccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC----CC
Confidence 4 7899999999996543 59999999999999999864 455688899999999999996544 444443 89
Q ss_pred EEEEeeCCCCce----------------eEEEecc-cCceeEEEEEcCCCC-EEEEEeCCCcEEEE
Q 001184 568 HLVEWNESEGAL----------------KRTYIGF-RKKSAGVVQFDTTRN-RILAAGEDNQIKFW 615 (1130)
Q Consensus 568 ~i~~wd~~~~~~----------------~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~dg~i~vw 615 (1130)
+|.+||+....- .+.+.-| .+..+.-+.|+++-. ++++.+.|| +.||
T Consensus 371 QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 371 QITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred cEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 999999853211 1112222 222466678887654 677777777 4444
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.3e-17 Score=167.95 Aligned_cols=492 Identities=13% Similarity=0.113 Sum_probs=292.5
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEE------ecCCCceEEEEEcCCCcE
Q 001184 407 DSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAF------SYPNKQLCIVTCGDDKLI 480 (1130)
Q Consensus 407 ~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~------s~d~~~l~l~s~s~d~~v 480 (1130)
.|...|.|+.|+.+...+.+++++..+.-||+.+.. .... .+ ....|.-.-+ ...++.-.++.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s-~~~~-~~--p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS-VEVA-KL--PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchh-hhhh-hC--CcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 466678899999988877777655555555554432 2111 11 1111111111 011111168889999999
Q ss_pred EEEecCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEee
Q 001184 481 RVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCG 560 (1130)
Q Consensus 481 ~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1130)
.|.+..++.-.....|.+.+.+-.|++ +|.-|++++.||.|++|.- ++-...++.....+|+|++|.|+.+.++.|.
T Consensus 88 ~il~k~~rVE~sv~AH~~A~~~gRW~~--dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~ 164 (737)
T KOG1524|consen 88 VILNKSARVERSISAHAAAISSGRWSP--DGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQ 164 (737)
T ss_pred EEecccchhhhhhhhhhhhhhhcccCC--CCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEec
Confidence 999999999999999999999999965 5577999999999999974 3334445555667899999999999888875
Q ss_pred ecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEE
Q 001184 561 TSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRF 640 (1130)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~ 640 (1130)
.+.+.+=.+.....+-....|.+ .|.++.|++..+.+++||+|-..+|||.. |+.+..-..+.. +|++++|
T Consensus 165 -----g~h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey--~ITSva~ 235 (737)
T KOG1524|consen 165 -----GGHISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEY--AITSVAF 235 (737)
T ss_pred -----CCeEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeeccc-CcccccCChhcc--ceeeeee
Confidence 56777777766666667777655 89999999999999999999999999975 455554444544 8999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccC
Q 001184 641 NKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNG 720 (1130)
Q Consensus 641 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~ 720 (1130)
.|+ +.++.++.+ ++|+ .
T Consensus 236 npd-~~~~v~S~n-t~R~---~---------------------------------------------------------- 252 (737)
T KOG1524|consen 236 NPE-KDYLLWSYN-TARF---S---------------------------------------------------------- 252 (737)
T ss_pred ccc-cceeeeeee-eeee---c----------------------------------------------------------
Confidence 999 666666543 3331 0
Q ss_pred CCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEee-ecCCC
Q 001184 721 ADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLW-KWNRT 799 (1130)
Q Consensus 721 ~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw-~~~~~ 799 (1130)
....+.|..++|++||.+++++...|.+.+- -++..
T Consensus 253 -------------------------------------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~ 289 (737)
T KOG1524|consen 253 -------------------------------------------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQ 289 (737)
T ss_pred -------------------------------------------CCCccceEEEEEcCCCceeeccccCceEEEeeeehhh
Confidence 1145678899999999999999998887652 22221
Q ss_pred CCCCCcccc--cccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCe
Q 001184 800 EQNPSGKAT--AAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPAS 877 (1130)
Q Consensus 800 ~~~~~~~~~--~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i 877 (1130)
-....++.. ....+.+-|+.++..... .....+... +-.-.+|+++....|++|.-........+.+....+
T Consensus 290 l~~~n~~~t~~~r~~I~vrdV~~~v~d~L----E~p~rv~k~--sL~Y~hLvvaTs~qvyiys~knwntpiiidgre~tr 363 (737)
T KOG1524|consen 290 LVSGNLKATSKSRKSITVRDVATGVQDIL----EFPQRVVKF--SLGYGHLVVATSLQVYIYSEKNWNTPIIIDGREDTR 363 (737)
T ss_pred hhhccceeEeeccceEEeehhhhhHHHHh----hCccceeee--eeceeEEEEEeccEEEEEecCCccCcEEEeccccch
Confidence 111111111 111233444444443221 123334433 345567888888889999877666555555544433
Q ss_pred EEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEE--EecCCCC---eeEEEEccCCCeEEEEe--CCCcEEEEEC-CCC
Q 001184 878 TFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK--LKGHQKH---ITGLAFSTNLNILVSSG--SDAQLIFWNT-DTW 949 (1130)
Q Consensus 878 ~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~--l~~h~~~---V~~l~~s~dg~~L~s~s--~Dg~i~vwd~-~~~ 949 (1130)
.-+.-+. +++. .....+|.+|..+... ... +++..-+ -..+....| .|+.-. ....+.++|. .++
T Consensus 364 ~lieq~e---k~fl-i~dgsSi~lytyegR~-~~np~~Pg~~~dlL~~rtlsLand--tLaird~ad~kvlhlFd~istg 436 (737)
T KOG1524|consen 364 NLIEQGE---KYFL-ILDGSSIWLYTYEGRL-HLNPRYPGSQIDLLTWRTLSLAND--TLAIRDNADPKVLHLFDLISTG 436 (737)
T ss_pred hHhhhhh---hheE-EecCcEEEEEEecCce-ecCCCCCCcccccccceeeecccc--eEEeecCCCCeeEEeccCCCCC
Confidence 3222222 2222 2233456666654322 111 1111000 012222222 333322 2344677887 444
Q ss_pred cccceeeEeccCCCCCCCeEEEEEc----CCCcEEEE-EcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEE
Q 001184 950 EKRKSIAIQLPAGKLPVGETRVQFH----SDQVRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLI 1024 (1130)
Q Consensus 950 ~~~~~~~~~~~~~~~~~~v~~~~~s----~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 1024 (1130)
+...-. ... .+...+..++.. ++.+.++. ..++.+.|=.++....-..+..- ..-|..++|+. -.-+
T Consensus 437 k~qgDg--k~L--~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~Ki---GTmVhtLawnd-ttNi 508 (737)
T KOG1524|consen 437 KRQGDG--KSL--RHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYKI---GTMVHTLAWND-TTNI 508 (737)
T ss_pred cccCCc--ccc--chhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhhhh---hhhhhhhhhcc-ccce
Confidence 322110 000 011223333332 33334443 44555666555543222222222 45678889874 4456
Q ss_pred EEEeCCCcEEEEeCCCc
Q 001184 1025 YATFTDGSIGVFDADSL 1041 (1130)
Q Consensus 1025 ~t~~~Dg~i~vwd~~~~ 1041 (1130)
++|-.|+.+.||-+.+-
T Consensus 509 LcglqDt~fsVWy~pn~ 525 (737)
T KOG1524|consen 509 LCGLQDTCFSVWYYPNE 525 (737)
T ss_pred eeeeccceEEEEEcCCc
Confidence 77888999999987754
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-17 Score=161.47 Aligned_cols=228 Identities=12% Similarity=0.126 Sum_probs=171.2
Q ss_pred ccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeE
Q 001184 777 NSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKV 856 (1130)
Q Consensus 777 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i 856 (1130)
|+..++++.+.+.-|.+||.-+++...... .+|.. ..-....+++|+|||..|.+|....|
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~--------~ydh~-----------de~taAhsL~Fs~DGeqlfaGykrci 181 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYR--------AYDHQ-----------DEYTAAHSLQFSPDGEQLFAGYKRCI 181 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchh--------hhhhH-----------HhhhhheeEEecCCCCeEeecccceE
Confidence 566777888888889888876654432221 11111 01223468999999999999999999
Q ss_pred EEEEC-CCceeEEE---E----eCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccC
Q 001184 857 SLFNM-MNFKVMTT---F----MSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTN 928 (1130)
Q Consensus 857 ~iwd~-~~~~~~~~---~----~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d 928 (1130)
++||+ +.|+.-.. + .+..+-+.+++|+|.+...+|+|+....+-||.-....++..+-+|.+.|+.+.|.+|
T Consensus 182 rvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~ed 261 (406)
T KOG2919|consen 182 RVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCED 261 (406)
T ss_pred EEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccC
Confidence 99999 44432221 1 1235668999999988889999999999999999999999999999999999999999
Q ss_pred CCeEEEEeC-CCcEEEEECCCCcccceeeEeccCCCCC--CCeEEEEEcCCCcEEEEE-cCCcEEEEECCC-ceeeeeee
Q 001184 929 LNILVSSGS-DAQLIFWNTDTWEKRKSIAIQLPAGKLP--VGETRVQFHSDQVRLLVN-HETQLAIYDGSK-MECIRQWV 1003 (1130)
Q Consensus 929 g~~L~s~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~-~~~~~~~~ 1003 (1130)
|+.|++|+. |..|..||+....... -....+.. ..-.-....|++++|+++ .+|.|++||+++ |..+..+.
T Consensus 262 Gn~lfsGaRk~dkIl~WDiR~~~~pv----~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~ 337 (406)
T KOG2919|consen 262 GNKLFSGARKDDKILCWDIRYSRDPV----YALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG 337 (406)
T ss_pred cCeecccccCCCeEEEEeehhccchh----hhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc
Confidence 999999987 7789999998743211 11112221 222334456899999996 799999999998 66566665
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEEeCC
Q 001184 1004 PQDVLSSPISSAAYSCNSQLIYATFTD 1030 (1130)
Q Consensus 1004 ~~~~~~~~v~~v~~s~dg~~l~t~~~D 1030 (1130)
.+ +..++.+++.|--.++|+++..
T Consensus 338 ~~---sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 338 NY---SDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cc---cccccceecCcccceeeeccCc
Confidence 55 7899999999998899988854
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.6e-18 Score=174.95 Aligned_cols=210 Identities=14% Similarity=0.255 Sum_probs=169.4
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC-CCCE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNF 423 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~ 423 (1130)
+|++.|.+++|..+-+.+||+||.|.+|++||+.+|++.. ++..|...|.+++|.| ...+
T Consensus 241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~-------------------s~~~~~k~Vq~l~wh~~~p~~ 301 (463)
T KOG0270|consen 241 GHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKS-------------------SITHHGKKVQTLEWHPYEPSV 301 (463)
T ss_pred cchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcce-------------------ehhhcCCceeEEEecCCCceE
Confidence 5999999999999998899999999999999999999876 5778999999999999 5789
Q ss_pred EEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCeeeEecCCCcCEE
Q 001184 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPVY 501 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~~~~~~h~~~v~ 501 (1130)
|++|+.|++|.+.|++...+.... + .-.+.|-.++|.|.... .++++..||+|+-+| ..|+++.+++.|.++|.
T Consensus 302 LLsGs~D~~V~l~D~R~~~~s~~~--w-k~~g~VEkv~w~~~se~-~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~IS 377 (463)
T KOG0270|consen 302 LLSGSYDGTVALKDCRDPSNSGKE--W-KFDGEVEKVAWDPHSEN-SFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEIS 377 (463)
T ss_pred EEeccccceEEeeeccCccccCce--E-EeccceEEEEecCCCce-eEEEecCCceEEeeecCCCCCceeEEEeccCCcc
Confidence 999999999999999853333322 2 24567999999998886 788889999999999 56799999999999999
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcceee--ecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCce
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD--YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL 579 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1130)
+++++.... .++++++.|+.|++|++........ ....-+...|+++.|+-..+++.+. ..+.+++||+.+...
T Consensus 378 gl~~n~~~p-~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG---~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 378 GLSVNIQTP-GLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGG---EKAVLRVWDIFTNSP 453 (463)
T ss_pred eEEecCCCC-cceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecC---ccceEEEeecccChh
Confidence 999976443 5899999999999999876554332 1222234677888887766554432 166899999987665
Q ss_pred eE
Q 001184 580 KR 581 (1130)
Q Consensus 580 ~~ 581 (1130)
++
T Consensus 454 V~ 455 (463)
T KOG0270|consen 454 VR 455 (463)
T ss_pred HH
Confidence 43
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.1e-17 Score=165.23 Aligned_cols=233 Identities=14% Similarity=0.243 Sum_probs=183.4
Q ss_pred eecCCCccEEEEEEcC-CCCEEEEEeCCCeEEEEEecCCcc----ceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCC
Q 001184 404 IVKDSSISVSRVAWSP-DGNFIGVAFTKHLIHLYTYQGSND----LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK 478 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~sp-dg~~las~~~d~~i~vwd~~~~~~----~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~ 478 (1130)
...||.++|..++|+| +...||+||.|.+|.||++..+.. ......+.||...|--++|+|.... .|+|++.|+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence 5789999999999999 677999999999999999965432 2345678999999999999998877 899999999
Q ss_pred cEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCc-cEEEEEEecCCCeE
Q 001184 479 LIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL-WCTTMLYSADGSRL 556 (1130)
Q Consensus 479 ~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l 556 (1130)
+|.+|| .+|+.+.++. |...|.+++|+ .||.+|++.+.|..|||||.++++....-..|.+ .-..+.|-.+|. +
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn--~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFN--RDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEec--cCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 999999 8999998888 99999999995 5668999999999999999999988887655544 556677888998 7
Q ss_pred EEeeecCCCCcEEEEeeCCCCce---eEEEecccCceeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCce-eEEEeccCC
Q 001184 557 FSCGTSKEGDSHLVEWNESEGAL---KRTYIGFRKKSAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNM-LTSTEAEGG 631 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~-~~~~~~~~~ 631 (1130)
++.+.++-.+.++-+||...-.. ...+.. ...|.--.+.++.+.++.+| .|+.||-|.+.+..+ +..+.....
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt--SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S 308 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELDT--SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS 308 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEecc--CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccccc
Confidence 77777777899999999765332 333332 33466667888888776655 799999999987653 333333222
Q ss_pred CCCcceEEEcCC
Q 001184 632 LPSLPRLRFNKE 643 (1130)
Q Consensus 632 ~~~i~~v~~s~~ 643 (1130)
..+-..+.|-|.
T Consensus 309 ~epQRG~g~mPK 320 (472)
T KOG0303|consen 309 KEPQRGMGFMPK 320 (472)
T ss_pred CCcccccccccc
Confidence 334455666653
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-17 Score=166.25 Aligned_cols=247 Identities=17% Similarity=0.255 Sum_probs=187.7
Q ss_pred cEEEEEEcC-----CCCEEEEE---eCCCeEEEEEe-cCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001184 411 SVSRVAWSP-----DGNFIGVA---FTKHLIHLYTY-QGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR 481 (1130)
Q Consensus 411 ~V~~v~~sp-----dg~~las~---~~d~~i~vwd~-~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~ 481 (1130)
.|+.++|.. +.++||.. +..|...+--+ ++|+.-.....+.||+++|.+++|+|-+.+ .|+|||+|.+|.
T Consensus 29 rVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~-vIASgSeD~~v~ 107 (472)
T KOG0303|consen 29 RVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDC-VIASGSEDTKVM 107 (472)
T ss_pred eeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCc-eeecCCCCceEE
Confidence 455566643 45666653 12222222222 344433344456899999999999997776 899999999999
Q ss_pred EEe-cCC-------CeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCC
Q 001184 482 VWD-LSG-------RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADG 553 (1130)
Q Consensus 482 iwd-~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 553 (1130)
||. ..+ +.+..+.||...|.-+.|||... +.|++++.|.+|.+||+.+++....+. |..-|.++.|+.||
T Consensus 108 vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dG 185 (472)
T KOG0303|consen 108 VWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDG 185 (472)
T ss_pred EEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCC
Confidence 999 333 34678899999999999999765 789999999999999999999999888 88899999999999
Q ss_pred CeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEe----CCCcEEEEeCCCCceeEEEecc
Q 001184 554 SRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG----EDNQIKFWDMDNVNMLTSTEAE 629 (1130)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~ 629 (1130)
.++++++. |..|++||.++++.+..-.+|.+..-..+.|-.++. +++.+ .+..+-+||..+.+....+..-
T Consensus 186 s~l~Ttck----DKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~el 260 (472)
T KOG0303|consen 186 SLLCTTCK----DKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQEL 260 (472)
T ss_pred ceeeeecc----cceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEe
Confidence 99999987 899999999999999888888776666677888888 55543 5778999998775433222222
Q ss_pred CCCCCcceEEEcCCCCEEEEE-eCCCcEEEEEcCCCc
Q 001184 630 GGLPSLPRLRFNKEGNLLVVT-TADQGIKILANADGL 665 (1130)
Q Consensus 630 ~~~~~i~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~ 665 (1130)
.....|.---|.+|.++++.+ -.|+.||-|++.+..
T Consensus 261 DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 261 DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 222356666778888877655 468999999997763
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-18 Score=197.04 Aligned_cols=281 Identities=12% Similarity=0.197 Sum_probs=210.9
Q ss_pred cccCCCCCcccccCCcccc----eeeeccCCCCEEEEEEecCCCe---EEEEEeCcCeEEEEeCCCCceeecccceeeec
Q 001184 321 TYPVPSQQATWSLDDLPRA----VACTMHQGSSVVSMDFHPFHHT---LLVVGCGDGEITLWDVGLRERLVSKPFKIWDM 393 (1130)
Q Consensus 321 ~~s~~~~~~~~~~~~~~~~----~~~~~~h~~~V~~v~fspdg~~---llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 393 (1130)
.||....+-+|..+..... ..-.+.-..+-+.++|.+.|.. +||.|..||.|.+||...- +.....
T Consensus 34 sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~--~~~~~~----- 106 (1049)
T KOG0307|consen 34 SFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI--IANASE----- 106 (1049)
T ss_pred ccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCCceEEecchhh--ccCcch-----
Confidence 3444555555554443322 3334456678899999998876 6999999999999998752 110000
Q ss_pred cccccceeeeeecCCCccEEEEEEcCCCC-EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEE
Q 001184 394 SNCSMMLQAAIVKDSSISVSRVAWSPDGN-FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIV 472 (1130)
Q Consensus 394 ~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~ 472 (1130)
. .......|.+.|..+.|++.+. +||+|+.||.|.|||+..-+...... -....+.|.+++|+..-.+ +|+
T Consensus 107 -----~-~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILA 178 (1049)
T KOG0307|consen 107 -----E-VLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILA 178 (1049)
T ss_pred -----H-HHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-Hhh
Confidence 0 0113668999999999999765 99999999999999998743221110 1224567999999987776 799
Q ss_pred EEcCCCcEEEEe-cCCCeeeEecCCCc--CEEEEeecccCCccEEEEEecCC--cEEEEEccCCcce-eeecCCCccEEE
Q 001184 473 TCGDDKLIRVWD-LSGRKLFQFEGHEA--PVYSVCPHQKENIHFIFSTAVDG--KIKAWLYDNVGSR-VDYDAPGLWCTT 546 (1130)
Q Consensus 473 s~s~d~~v~iwd-~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~dg--~i~vwd~~~~~~~-~~~~~~~~~v~~ 546 (1130)
+++.+|.+.||| ...+.+..+..|.+ .+..+.|||+...+++++..+|+ .|.+||++..... ..+..|...|.+
T Consensus 179 S~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~Gils 258 (1049)
T KOG0307|consen 179 SGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILS 258 (1049)
T ss_pred ccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceee
Confidence 999999999999 66667777776655 46789999977655554444444 5999999876544 466789999999
Q ss_pred EEEecCC-CeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCc
Q 001184 547 MLYSADG-SRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDNVN 621 (1130)
Q Consensus 547 ~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~ 621 (1130)
+.|++.+ +++++++. |++|.+|+.++++.+..+.. .+..+..+.|+|... .+++++.||.|.|+.+.+..
T Consensus 259 lsWc~~D~~lllSsgk----D~~ii~wN~~tgEvl~~~p~-~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 259 LSWCPQDPRLLLSSGK----DNRIICWNPNTGEVLGELPA-QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eccCCCCchhhhcccC----CCCeeEecCCCceEeeecCC-CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999966 88888886 99999999999999999887 444788899999886 77889999999999987654
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-18 Score=190.67 Aligned_cols=280 Identities=18% Similarity=0.275 Sum_probs=214.7
Q ss_pred eeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC
Q 001184 341 ACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1130)
Q Consensus 341 ~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 420 (1130)
.+.++|...|+|+.|...|++ +++|+.|..|+||..+++.++. ...||++.|+.++.+.+
T Consensus 184 krLlgH~naVyca~fDrtg~~-Iitgsdd~lvKiwS~et~~~lA-------------------s~rGhs~ditdlavs~~ 243 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRY-IITGSDDRLVKIWSMETARCLA-------------------SCRGHSGDITDLAVSSN 243 (1113)
T ss_pred HHHHhhhhheeeeeeccccce-EeecCccceeeeeeccchhhhc-------------------cCCCCccccchhccchh
Confidence 345689999999999999985 9999999999999999999886 47899999999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeE----ecC-
Q 001184 421 GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQ----FEG- 495 (1130)
Q Consensus 421 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~----~~~- 495 (1130)
..++|+++.|..|++|.+..+..+. .+.||++.|++++|+|- .+.+.||++++||..-..+.. +..
T Consensus 244 n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~~ 314 (1113)
T KOG0644|consen 244 NTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKFT 314 (1113)
T ss_pred hhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCcc
Confidence 9999999999999999999988665 68999999999999984 478899999999944222111 111
Q ss_pred CCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCC-eEEEeeecCCCCcEEEEeeC
Q 001184 496 HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGS-RLFSCGTSKEGDSHLVEWNE 574 (1130)
Q Consensus 496 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~ 574 (1130)
...-+.++.| ..++.-++|++.|+.-..|.+..... +...+.-+.++.|-. +.+++-. +-.+++|++
T Consensus 315 ~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar~----~~~~~vwnl 382 (1113)
T KOG0644|consen 315 EKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTARN----DHRLCVWNL 382 (1113)
T ss_pred cccceeeeec--cccccccccccCCcccccchhhHhhh------hccceEEEeccccccccceeeee----eeEeeeeec
Confidence 1233444444 34556788999999888886543211 111122222222322 2233322 678899999
Q ss_pred CCCceeEEEecccCceeEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCC
Q 001184 575 SEGALKRTYIGFRKKSAGVVQFDTTRNRI-LAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD 653 (1130)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~d 653 (1130)
.+|.+.+.+.+|.+ .+..+.++|-+.++ .+++.||...|||+-.|.+++..... + ..+....||++|..++....-
T Consensus 383 ~~g~l~H~l~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h-~kl~d~kFSqdgts~~lsd~h 459 (1113)
T KOG0644|consen 383 YTGQLLHNLMGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-H-GKLVDGKFSQDGTSIALSDDH 459 (1113)
T ss_pred ccchhhhhhccccc-ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-c-ceeeccccCCCCceEecCCCC
Confidence 99999999998877 78899999987655 46899999999999999888776533 2 367888999999999998888
Q ss_pred CcEEEEEcCCC
Q 001184 654 QGIKILANADG 664 (1130)
Q Consensus 654 g~i~iw~~~~~ 664 (1130)
|.+.|.....+
T Consensus 460 gql~i~g~gqs 470 (1113)
T KOG0644|consen 460 GQLYILGTGQS 470 (1113)
T ss_pred CceEEeccCCC
Confidence 99999876444
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.1e-16 Score=168.54 Aligned_cols=634 Identities=12% Similarity=0.122 Sum_probs=362.4
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCC----
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG---- 421 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg---- 421 (1130)
|...-.++.|+|.| ++|-|+. ..|.+-|..+-+.+. .+.-|...|+.+.|.|-.
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iq-------------------sie~h~s~V~~VrWap~~~p~~ 71 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQ-------------------SIELHQSAVTSVRWAPAPSPRD 71 (1062)
T ss_pred CcccccccccCccc--eEEEecC-ceEEEEehhhhhhhh-------------------ccccCccceeEEEeccCCCchh
Confidence 44557789999998 6888874 488999988777665 466889999999998731
Q ss_pred --------CEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEec---CCCceEEEEEcCCCcEEEEe-cCCCe
Q 001184 422 --------NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY---PNKQLCIVTCGDDKLIRVWD-LSGRK 489 (1130)
Q Consensus 422 --------~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~---d~~~l~l~s~s~d~~v~iwd-~~~~~ 489 (1130)
-.||++...|.|.+||...+..+. .+..|.++|.+++|-+ +.+. +|+.-....++.+|+ .+|+.
T Consensus 72 llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 72 LLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred ccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCce
Confidence 257888888999999999876443 5788999999999976 3434 677777788999999 99999
Q ss_pred eeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccC------CcceeeecCC-Cc--------------------
Q 001184 490 LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN------VGSRVDYDAP-GL-------------------- 542 (1130)
Q Consensus 490 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~------~~~~~~~~~~-~~-------------------- 542 (1130)
+...........|+.+.|-...++.+. +..|.+.+-+.-. ....+.+... ..
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~rh~~~l-~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~s 226 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDSRHFCVL-GSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPAS 226 (1062)
T ss_pred eeccccCCcceeeeeeCCCCcceEEEE-ccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcc
Confidence 888776667777788777554444443 4445555443311 1111111110 00
Q ss_pred -----cEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCC--EEEEEeCCCcEEEE
Q 001184 543 -----WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN--RILAAGEDNQIKFW 615 (1130)
Q Consensus 543 -----~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~vw 615 (1130)
..-.++|+|.-+.++.... ...+.++|++-..++....-..+ .+..+.+-|+++ .++++-.||.+.+|
T Consensus 227 a~fity~a~faf~p~~rn~lfi~~----prellv~dle~~~~l~vvpier~-~akfv~vlP~~~rd~LfclH~nG~ltir 301 (1062)
T KOG1912|consen 227 AYFITYCAQFAFSPHWRNILFITF----PRELLVFDLEYECCLAVVPIERG-GAKFVDVLPDPRRDALFCLHSNGRLTIR 301 (1062)
T ss_pred hhHHHHHHhhhcChhhhceEEEEe----ccceEEEcchhhceeEEEEeccC-CcceeEeccCCCcceEEEEecCCeEEEE
Confidence 1223566776655554444 67799999988888777765444 556677777764 79999999999999
Q ss_pred eCCCC----------------ceeEEEeccCCCCCcceEEEcCC-CCEEEEEeCCCcEEEEEcCCCchhhhhhccccccc
Q 001184 616 DMDNV----------------NMLTSTEAEGGLPSLPRLRFNKE-GNLLVVTTADQGIKILANADGLRALRAIETRAYET 678 (1130)
Q Consensus 616 d~~~~----------------~~~~~~~~~~~~~~i~~v~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 678 (1130)
-.+.. +....+...... .+...+..|. ...++..-.+|.+.+|.+.++ +..........+.
T Consensus 302 vrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~-rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~-ri~~~~~s~~iel 379 (1062)
T KOG1912|consen 302 VRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEF-RPVIGASCPSTPSALAVLYSSGDSTFWQLSNG-RIHLDYRSSSIEL 379 (1062)
T ss_pred EeeccCccccccchhhccccccceEEEeechhc-ccceeecCCCChhhhhhhhhcchhHHHhhhcC-CcCcccccccccc
Confidence 76541 111111111111 1122222342 445566667888889998765 2211111000000
Q ss_pred cccccc----ccccccceeeccccccccc--cccCCCCCCCCccc-cc-CCCccccCCCCcccccccCCCccceeecccc
Q 001184 679 SRASTE----MKVPGSAVVTTITPVLSKA--ERVDRSSPARPSTI-LN-GADSAARGIEKPRNLEDISDKTKPWELTEIV 750 (1130)
Q Consensus 679 ~~~~~~----~~~~~~~~~~~~sp~~~~~--~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~ 750 (1130)
.. +.. ...++......+|-+.+.- ..+.+..|...-.. .. .+.......-..++.|...|+|.++++.+..
T Consensus 380 ~~-pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~ 458 (1062)
T KOG1912|consen 380 VL-PFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNA 458 (1062)
T ss_pred cc-cccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchh
Confidence 00 000 0000000111111110000 00001111111000 00 0111111112345688999999999987644
Q ss_pred CCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeC--CeEEeeecCCCCCCCCcccccccccccccCCCCcceecc-
Q 001184 751 DPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSN--GVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTND- 827 (1130)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~- 827 (1130)
-...+ ..|...|.++.|......+-.+.+. .... .....+.+-++.+|.-....
T Consensus 459 v~~~f--------svht~~VkgleW~g~sslvSfsys~~n~~sg---------------~vrN~l~vtdLrtGlsk~fR~ 515 (1062)
T KOG1912|consen 459 VAASF--------SVHTSLVKGLEWLGNSSLVSFSYSHVNSASG---------------GVRNDLVVTDLRTGLSKRFRG 515 (1062)
T ss_pred hhhhh--------cccccceeeeeeccceeEEEeeecccccccc---------------ceeeeEEEEEccccccccccc
Confidence 32222 2388889999988766544333221 1011 11122344566666544332
Q ss_pred CCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEe-CC---------------CCcEE
Q 001184 828 VPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFH-PQ---------------DNNII 890 (1130)
Q Consensus 828 ~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s-p~---------------~~~~l 890 (1130)
+.+..+.+|+.+..|.-|+|++..- +.-+.+||+++..+++.+...-.-++.+.|+ |. ..+.+
T Consensus 516 l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~v 595 (1062)
T KOG1912|consen 516 LQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSENLV 595 (1062)
T ss_pred CCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhcee
Confidence 2335678999999999999999998 7779999999887776665444558888888 31 01233
Q ss_pred EEEeCCCcEEEEEeec-------CeE-EEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCC
Q 001184 891 AIGMEDSTIQIYNVRV-------DEV-KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAG 962 (1130)
Q Consensus 891 asg~~dg~v~iwd~~~-------~~~-~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~ 962 (1130)
+..+ +..+++.+.. +.. ....+.....+.+|+|- +..|+.|+.+|.+.+||+...+.+... ..+..
T Consensus 596 v~ds--~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAwk--~d~lv~GD~~GNl~~WDlg~R~SRg~~--d~p~~ 669 (1062)
T KOG1912|consen 596 VLDS--VESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAWK--DDILVVGDVEGNLVVWDLGRRQSRGVR--DSPDP 669 (1062)
T ss_pred eecc--ccchheehhhhhhhhccccchhhHHHHHHHHHHhhhcc--CCeeEeecccCceeEEecccccccCcc--CCCCc
Confidence 3333 2233333321 111 11111122234456774 669999999999999998764322211 11111
Q ss_pred CCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcc
Q 001184 963 KLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLR 1042 (1130)
Q Consensus 963 ~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~ 1042 (1130)
......+.+-|....+++-....+-+||.+....+..+.+.. ....+..+.+......++. .|..+|+-.+....
T Consensus 670 --ra~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~siag~d-ssfrlldvdlc~~~~~~l~--~d~~~Rf~~m~mks 744 (1062)
T KOG1912|consen 670 --RAHSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSIAGMD-SSFRLLDVDLCEKSPLVLP--NDNKERFRVMPMKS 744 (1062)
T ss_pred --hhhheecccCCCCceEEEEecCcceecccccceeeeeeccCC-cceEEEEEEecccCceecC--CCCceeEEeccccC
Confidence 122223333444334555556678999999988888885542 1344555555544444433 45588877776655
Q ss_pred cccccC
Q 001184 1043 LRCRIA 1048 (1130)
Q Consensus 1043 ~~~~~~ 1048 (1130)
......
T Consensus 745 ~~ll~~ 750 (1062)
T KOG1912|consen 745 PPLLPK 750 (1062)
T ss_pred CccccC
Confidence 443333
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5e-16 Score=169.17 Aligned_cols=542 Identities=13% Similarity=0.151 Sum_probs=314.2
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecC----------CCceEEEEEcCCCc
Q 001184 410 ISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP----------NKQLCIVTCGDDKL 479 (1130)
Q Consensus 410 ~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d----------~~~l~l~s~s~d~~ 479 (1130)
..-.++.|+|.| +||.|+. ..|.+-|..+-+.+. .+.-|...|+.+.|.|. ..+++|+++...|.
T Consensus 16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred ccccccccCccc-eEEEecC-ceEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 346788999987 7888765 468888988766554 67889999999999873 23457889999999
Q ss_pred EEEEe-cCCCeeeEecCCCcCEEEEeecccCCc--cEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEec-CCCe
Q 001184 480 IRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENI--HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSA-DGSR 555 (1130)
Q Consensus 480 v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~ 555 (1130)
|.+|| ..+..+..+..|..++..++|.+..+. .+|+.-....++.+|+.++++.............++.+.| |.+.
T Consensus 91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh 170 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH 170 (1062)
T ss_pred EEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence 99999 888888999999999999999876443 4677778889999999999999998888877888899888 4455
Q ss_pred EEEeeecCCCCcEEEEeeCCC-------CceeEEEecccC----------------ce--------eEEEEEcCCCCEEE
Q 001184 556 LFSCGTSKEGDSHLVEWNESE-------GALKRTYIGFRK----------------KS--------AGVVQFDTTRNRIL 604 (1130)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~-------~~~~~~~~~~~~----------------~~--------v~~~~~~~~~~~l~ 604 (1130)
+..-+. .|.+.+-+.-. ++..+.-..|.+ .. ....+|+|.-+.++
T Consensus 171 ~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l 246 (1062)
T KOG1912|consen 171 FCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL 246 (1062)
T ss_pred EEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence 544443 45555444211 222222221111 00 01256788777677
Q ss_pred EEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcC--CCCEEEEEeCCCcEEEEEcCCCchhhhhhccccccccccc
Q 001184 605 AAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK--EGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRAS 682 (1130)
Q Consensus 605 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 682 (1130)
.......+.++|++-..++.....+.+ .+.-+.+-| ....|++.-.||.+.+|--+.....++....
T Consensus 247 fi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~--------- 315 (1062)
T KOG1912|consen 247 FITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNA--------- 315 (1062)
T ss_pred EEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccch---------
Confidence 777788999999999999988887765 344555555 4567999999999999975442121111100
Q ss_pred ccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCC-CCcccccccCCCccceeeccccCCcceeEEEec
Q 001184 683 TEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGI-EKPRNLEDISDKTKPWELTEIVDPLQCRVVAMP 761 (1130)
Q Consensus 683 ~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~ 761 (1130)
.++.+.+....+.+... ....+.+. ..+. ...++.--.+|...+|.+.....
T Consensus 316 ------------~l~~dl~~Q~~~vr~m~--~~rp~~~~---~cPs~~sa~avl~s~g~~~~w~l~~~ri---------- 368 (1062)
T KOG1912|consen 316 ------------SLSMDLGEQVHVVRPME--EFRPVIGA---SCPSTPSALAVLYSSGDSTFWQLSNGRI---------- 368 (1062)
T ss_pred ------------hhccccccceEEEeech--hcccceee---cCCCChhhhhhhhhcchhHHHhhhcCCc----------
Confidence 11111000000000000 00000000 0000 11122223345555565543100
Q ss_pred CCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEE
Q 001184 762 ESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVAL 841 (1130)
Q Consensus 762 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~ 841 (1130)
|... ...+++.-.. .--.+....+....-...+.+| +|.....+...
T Consensus 369 ----~~~~--~s~~iel~~p--f~f~~~~~~v~k~~l~~LS~dg-------------------------~h~sGs~~~~~ 415 (1062)
T KOG1912|consen 369 ----HLDY--RSSSIELVLP--FDFNLSTKLVGKTSLISLSDDG-------------------------SHSSGSTCVRM 415 (1062)
T ss_pred ----Cccc--cccccccccc--ccccCceeehhhccccchhhcC-------------------------CCCCCceeeec
Confidence 0000 0000000000 0000000001000000011111 22222222222
Q ss_pred -----------ecCCC-------EEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEE---------
Q 001184 842 -----------SKNDS-------YVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIG--------- 893 (1130)
Q Consensus 842 -----------s~dg~-------~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg--------- 893 (1130)
.|.|+ ++|.|. .|+|.++|+.++...+.+..|...|.++.|.- ...++-.+
T Consensus 416 ~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g-~sslvSfsys~~n~~sg 494 (1062)
T KOG1912|consen 416 RPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLG-NSSLVSFSYSHVNSASG 494 (1062)
T ss_pred ccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecc-ceeEEEeeecccccccc
Confidence 12222 566776 79999999999999999999999999999976 44444222
Q ss_pred eCCCcEEEEEeecCeEE--EEEe-cCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEE
Q 001184 894 MEDSTIQIYNVRVDEVK--TKLK-GHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETR 970 (1130)
Q Consensus 894 ~~dg~v~iwd~~~~~~~--~~l~-~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~ 970 (1130)
+.-+.+.+-|+.+|... +-++ ....+|..+..|.-|++|+..-.|.-+.+||+++-.......... --++.
T Consensus 495 ~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~------P~it~ 568 (1062)
T KOG1912|consen 495 GVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLAL------PLITV 568 (1062)
T ss_pred ceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcC------CcEEE
Confidence 22245778888888532 2222 345789999999999999999999999999998754433222111 12566
Q ss_pred EEEc-CCCcE---------------EEEEcCCcEEEEECC-------CceeeeeeecCCCCCCCeEEEEECCCCCEEEEE
Q 001184 971 VQFH-SDQVR---------------LLVNHETQLAIYDGS-------KMECIRQWVPQDVLSSPISSAAYSCNSQLIYAT 1027 (1130)
Q Consensus 971 ~~~s-~d~~~---------------l~~~~d~~i~v~d~~-------~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~ 1027 (1130)
+.|+ |.-.- +++......+++.+. +|.....-.. .....+-.|+| .+..|+.|
T Consensus 569 leWsl~~~~si~qk~ls~q~sms~n~vv~ds~es~~~~~~~~a~~~sdgsq~~~a~e--sfafal~~mAw--k~d~lv~G 644 (1062)
T KOG1912|consen 569 LEWSLPKHPSIKQKELSKQSSMSENLVVLDSVESRIYHITLSALVVSDGSQVNTAWE--SFAFALCAMAW--KDDILVVG 644 (1062)
T ss_pred EeecccCCCCcccccchhhhhhhhceeeeccccchheehhhhhhhhccccchhhHHH--HHHHHHHhhhc--cCCeeEee
Confidence 6676 22111 111111223333322 1111100000 00122334555 36689999
Q ss_pred eCCCcEEEEeCCCcc
Q 001184 1028 FTDGSIGVFDADSLR 1042 (1130)
Q Consensus 1028 ~~Dg~i~vwd~~~~~ 1042 (1130)
..+|.+++||+...+
T Consensus 645 D~~GNl~~WDlg~R~ 659 (1062)
T KOG1912|consen 645 DVEGNLVVWDLGRRQ 659 (1062)
T ss_pred cccCceeEEeccccc
Confidence 999999999976543
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-16 Score=165.46 Aligned_cols=271 Identities=15% Similarity=0.186 Sum_probs=190.1
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEe-CCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWD-VGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 423 (1130)
.|...|.||.|+.+.. ++.+++ |..+.+|. +.+.+.... .+.....+ ...|-++- +..=-.....
T Consensus 12 r~~e~vc~v~w~~~ee-i~~~~d-Dh~~~~~~~~~~~s~~~~------~~p~df~p-----t~~h~~~r-s~~~g~~~d~ 77 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEE-IYFVSD-DHQIFKWSDVSRDSVEVA------KLPDDFVP-----TDMHLGGR-SSGGGKGSDT 77 (737)
T ss_pred ccceeEEeecccccce-EEEecc-CceEEEeecccchhhhhh------hCCcccCC-----cccccccc-ccCCCCCcce
Confidence 4778889999999886 455554 55555554 443322110 00000000 00110000 0000012347
Q ss_pred EEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCCCcCEEEE
Q 001184 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSV 503 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~~~v~~~ 503 (1130)
|+.++.||.+.+-+-...- ...+..|.++|.+-.|+|||. -|+|+|+||.|++|..+|-...++.....+|.|+
T Consensus 78 ~~i~s~DGkf~il~k~~rV----E~sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 78 LLICSNDGRFVILNKSARV----ERSISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCA 151 (737)
T ss_pred EEEEcCCceEEEecccchh----hhhhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEeccchHHHHHhhcCceeEEE
Confidence 8888999999888754421 125789999999999999999 7999999999999999998888888888999999
Q ss_pred eecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEE
Q 001184 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1130)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1130)
+|.|+.+ ..+++.+ +.+.+=-+.....+.....|.+-|.++.|++..+.++++|. |-..++||.. |+.+..-
T Consensus 152 ~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~Lf~S 223 (737)
T KOG1524|consen 152 RWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GANLFTS 223 (737)
T ss_pred EECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-CcccccC
Confidence 9987654 4555554 45555566667778888999999999999999999999986 8999999964 5555554
Q ss_pred ecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEE
Q 001184 584 IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659 (1130)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw 659 (1130)
..| ..++++++|.|+ +.++.++. +++|+=. ...+.|..++||+||..+++|+..|.+.+=
T Consensus 224 ~~~-ey~ITSva~npd-~~~~v~S~-nt~R~~~-------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 224 AAE-EYAITSVAFNPE-KDYLLWSY-NTARFSS-------------PRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred Chh-ccceeeeeeccc-cceeeeee-eeeeecC-------------CCccceEEEEEcCCCceeeccccCceEEEe
Confidence 444 348999999999 55555554 3444211 123378999999999999999999987653
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-16 Score=162.14 Aligned_cols=297 Identities=17% Similarity=0.204 Sum_probs=215.7
Q ss_pred ccceEEEEEeccCC-eEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCC
Q 001184 767 ASKVARLLYTNSGI-GILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1130)
Q Consensus 767 ~~~i~~l~~s~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1130)
..++.++.|.++.. .+++++.|..|++|.++.......+ ...........|...|.++.|+|+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---------------~~V~y~s~Ls~H~~aVN~vRf~p~g 77 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---------------MKVEYLSSLSRHTRAVNVVRFSPDG 77 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc---------------eeEEEeecccCCcceeEEEEEcCCc
Confidence 45788888888877 9999999999999988764332111 1222223344799999999999999
Q ss_pred CEEEEEe-CCeEEEEECC--------C--------ceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCe
Q 001184 846 SYVMSAG-GGKVSLFNMM--------N--------FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE 908 (1130)
Q Consensus 846 ~~la~~~-dg~i~iwd~~--------~--------~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~ 908 (1130)
..+|+|+ +|.|.+|-.. + ....+.+.+|...|..++|+| ++.++++|+.|..+++||+..|.
T Consensus 78 elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~ 156 (434)
T KOG1009|consen 78 ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQ 156 (434)
T ss_pred CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccce
Confidence 9999999 5889999765 3 344566778999999999999 89999999999999999999999
Q ss_pred EEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceee---EeccCC-C-------------CCCCeEEE
Q 001184 909 VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIA---IQLPAG-K-------------LPVGETRV 971 (1130)
Q Consensus 909 ~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~---~~~~~~-~-------------~~~~v~~~ 971 (1130)
....+..|..-|..++|.|-++++++-+.|...+.+.+...+...... ...... + ...-...+
T Consensus 157 l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRl 236 (434)
T KOG1009|consen 157 LLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRL 236 (434)
T ss_pred eEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhc
Confidence 999999999999999999999999999999877777766533222111 000000 0 11234567
Q ss_pred EEcCCCcEEEEE-----cCC-----cEEEEECCCce-eeeeeecCCCCCCCeEEEEECC------------------CCC
Q 001184 972 QFHSDQVRLLVN-----HET-----QLAIYDGSKME-CIRQWVPQDVLSSPISSAAYSC------------------NSQ 1022 (1130)
Q Consensus 972 ~~s~d~~~l~~~-----~d~-----~i~v~d~~~~~-~~~~~~~~~~~~~~v~~v~~s~------------------dg~ 1022 (1130)
+|+|||.+|++. ..+ ..++|+-...+ ++..+... ..++..+.|+| -+-
T Consensus 237 sfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~---~k~~lavr~~pVy~elrp~~~~~~~~~lpyrl 313 (434)
T KOG1009|consen 237 SFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSP---KKPALAVRFSPVYYELRPLSSEKFLFVLPYRL 313 (434)
T ss_pred ccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCC---CcceEEEEeeeeEEEeccccccccccccccce
Confidence 899999999972 122 34566654322 23333333 56667777765 223
Q ss_pred EEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 001184 1023 LIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSE 1094 (1130)
Q Consensus 1023 ~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~ 1094 (1130)
.+|.++ ...|+|||.++.+.++....-.| ...+.++|++ |+..|+..+.||-..+--+..
T Consensus 314 vfaiAt-~~svyvydtq~~~P~~~v~nihy----------~~iTDiaws~-dg~~l~vSS~DGyCS~vtfe~ 373 (434)
T KOG1009|consen 314 VFAIAT-KNSVYVYDTQTLEPLAVVDNIHY----------SAITDIAWSD-DGSVLLVSSTDGFCSLVTFEP 373 (434)
T ss_pred EEEEee-cceEEEeccccccceEEEeeeee----------eeecceeecC-CCcEEEEeccCCceEEEEEcc
Confidence 455555 66899999998888777753333 3456789998 588999999999766655543
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=176.36 Aligned_cols=265 Identities=14% Similarity=0.224 Sum_probs=190.8
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
.|.+.|++++|.|... .|++++.||++.+|+++....-. .....+...+.+|.++|.|++.+++++.+
T Consensus 292 s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~-----------~~~~epi~tfraH~gPVl~v~v~~n~~~~ 359 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSA-----------EKDVEPILTFRAHEGPVLCVVVPSNGEHC 359 (577)
T ss_pred cchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCcc-----------ccceeeeEEEecccCceEEEEecCCceEE
Confidence 4999999999999987 69999999999999994422111 11122445789999999999999999999
Q ss_pred EEEeCCCeEEEEEecCCc-------cceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCC-
Q 001184 425 GVAFTKHLIHLYTYQGSN-------DLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGH- 496 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~-------~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h- 496 (1130)
.+|+.||+|+.|++.... .......+.||.+.|+.+++|+... .|++|+.||++++|+.++....+|...
T Consensus 360 ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~~~f~~~~ 437 (577)
T KOG0642|consen 360 YSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESPCTFGEPK 437 (577)
T ss_pred EeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCccccCCcc
Confidence 999999999999664211 1112235789999999999999888 699999999999999433333444322
Q ss_pred -CcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCC-------ccEEEEEEecCCCeEEEeeecCCCCcE
Q 001184 497 -EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG-------LWCTTMLYSADGSRLFSCGTSKEGDSH 568 (1130)
Q Consensus 497 -~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-------~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1130)
.+.-.++.+..+.- ...++...-+.--+.+++.......+.... ..+..+...|.+...+++.. ++.
T Consensus 438 e~g~Plsvd~~ss~~-a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he----d~~ 512 (577)
T KOG0642|consen 438 EHGYPLSVDRTSSRP-AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE----DRS 512 (577)
T ss_pred ccCCcceEeeccchh-HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc----CCc
Confidence 22334454432211 112222222222333333333333332211 24677888888888888875 899
Q ss_pred EEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEecc
Q 001184 569 LVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE 629 (1130)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 629 (1130)
|+++|..++.++.....|.. .++++++.|+|.+|++++.|+.+++|.+....++.....+
T Consensus 513 Ir~~dn~~~~~l~s~~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 513 IRFFDNKTGKILHSMVAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred eecccccccccchheeeccc-eecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 99999999999999888776 8999999999999999999999999999877666554443
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.3e-18 Score=178.03 Aligned_cols=251 Identities=16% Similarity=0.180 Sum_probs=190.0
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEec-----CCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCC
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQ-----GSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK 478 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~-----~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~ 478 (1130)
++..|...|..++|.|-...|++++.||++++|+++ .+..+.+..++.+|.++|.|+++.+++. .+++|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence 577899999999999999999999999999999993 3344677889999999999999999999 799999999
Q ss_pred cEEEEe-c------CC----CeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCC--CccEE
Q 001184 479 LIRVWD-L------SG----RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP--GLWCT 545 (1130)
Q Consensus 479 ~v~iwd-~------~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--~~~v~ 545 (1130)
+|+.|+ . +. .....+.||++.|+.++++... ..|++++.||+++.|+...... ..+... .....
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 999995 1 11 2345678999999999998766 4699999999999999876555 222222 22334
Q ss_pred EEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccC------ceeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001184 546 TMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRK------KSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1130)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 619 (1130)
++.+-.....+..++. ..+.-.+++......+..+..... ..+..+..+|.+.+.+++.+|+.|+++|..+
T Consensus 444 svd~~ss~~a~~~~s~---~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~ 520 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASF---RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT 520 (577)
T ss_pred eEeeccchhHhhhhhc---ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc
Confidence 4554433211212110 022223344444444444432211 2455678899999999999999999999999
Q ss_pred CceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 620 VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 620 ~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+.++.....+.. .++++++.|+|.+|++++.||.+++|.+...
T Consensus 521 ~~~l~s~~a~~~--svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 521 GKILHSMVAHKD--SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred cccchheeeccc--eecceeecCCCceEEeecCCceeehhhccch
Confidence 999888776644 7999999999999999999999999998654
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-16 Score=158.93 Aligned_cols=294 Identities=12% Similarity=0.148 Sum_probs=208.0
Q ss_pred eccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCC
Q 001184 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1130)
Q Consensus 343 ~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 422 (1130)
.++|.+.|.++.||.+|+ +||+|+.|..++||+++..-..+. ..+++. .-..|...|.|++|....+
T Consensus 52 ~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~-----------~KPI~~-~~~~H~SNIF~L~F~~~N~ 118 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKT-----------PKPIGV-MEHPHRSNIFSLEFDLENR 118 (609)
T ss_pred hhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcC-----------CCCcee-ccCccccceEEEEEccCCe
Confidence 457999999999999998 699999999999999865332221 011111 2335678999999999999
Q ss_pred EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCC-e--eeEecCCCc
Q 001184 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGR-K--LFQFEGHEA 498 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~-~--~~~~~~h~~ 498 (1130)
+|.+|+.+++|..-|+++.+.+... .-....+.|+.+..+|-.. .+++.+.++.|.+|| .... . +..+.....
T Consensus 119 ~~~SG~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~ 195 (609)
T KOG4227|consen 119 FLYSGERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGK 195 (609)
T ss_pred eEecCCCcceeEeeecccceeeeee-cccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeecCCCc
Confidence 9999999999999999997655421 1122345899999999987 899999999999999 3322 2 223333445
Q ss_pred CEEEEeecccCCccEEEEEecCCcEEEEEccCCcceee-------ecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEE
Q 001184 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD-------YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1130)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1130)
....+.|+|... .+|++.+..+.+-+||.+....... +......-.++.|+|.|+.+.+.-. ...-.+
T Consensus 196 ~F~t~~F~P~~P-~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~~~P~~ 270 (609)
T KOG4227|consen 196 NFYTAEFHPETP-ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----GKCPLY 270 (609)
T ss_pred cceeeeecCCCc-eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----cCCCEE
Confidence 566777887543 6889999999999999987654431 1111222367889999999887643 233446
Q ss_pred eeCCCCcee-EEEecccC------ceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-----------------------
Q 001184 572 WNESEGALK-RTYIGFRK------KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN----------------------- 621 (1130)
Q Consensus 572 wd~~~~~~~-~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----------------------- 621 (1130)
||+-+.++. ..+. |.. ..+.+++|..+- .+++|+.+-.|++|.+....
T Consensus 271 ~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~ 348 (609)
T KOG4227|consen 271 FDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEK 348 (609)
T ss_pred eeeecccceeEecc-CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecc
Confidence 776654432 2222 221 134557776554 59999999999999875311
Q ss_pred eeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 622 MLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 622 ~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
.+..+.+| ..-++.+.|+|...+|++.+-.+.++||.-
T Consensus 349 ~~~VLrGH--RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 349 ELTVLRGH--RSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred eeEEEecc--cccccceeecCCcceEeccchhhheecccc
Confidence 12334444 346789999999999999999999999964
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-16 Score=166.86 Aligned_cols=236 Identities=14% Similarity=0.219 Sum_probs=161.0
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
.+.||++.|.|++|+.||.+|++|+.|-.+.|||.-..+.+... -.||.+.|.++.|-|....-+++||..|..|+++
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI--~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI--STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee--ecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 57899999999999999999999999999999999876655432 3699999999999997655589999999999999
Q ss_pred ecCC-----------CeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCccee----------eecCCCc
Q 001184 484 DLSG-----------RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV----------DYDAPGL 542 (1130)
Q Consensus 484 d~~~-----------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~----------~~~~~~~ 542 (1130)
|.+. .....+..|...|..++..|.. .+.+.+++.||+++-+|++...... .+...--
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~-PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG-PHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCC-CceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 9331 2345566799999988875532 2789999999999999998632211 1111122
Q ss_pred cEEEEEEecCCC-eEEEeeecCCCCcEEEEeeCCCCceeEEEecccC------ceeEEE-EEcCCCCEEEEEeCCCcEEE
Q 001184 543 WCTTMLYSADGS-RLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRK------KSAGVV-QFDTTRNRILAAGEDNQIKF 614 (1130)
Q Consensus 543 ~v~~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~~~-~~~~~~~~l~~~~~dg~i~v 614 (1130)
...++.++|... +|++|+. +...++||.+. .+..+..... ....|+ -|+|.+ + ...+|
T Consensus 202 elk~ltisp~rp~~laVGgs----dpfarLYD~Rr--~lks~~s~~~~~~~pp~~~~cv~yf~p~h--l--kn~~g---- 267 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGS----DPFARLYDRRR--VLKSFRSDGTMNTCPPKDCRCVRYFSPGH--L--KNSQG---- 267 (758)
T ss_pred eeeeeeecCCCCceEEecCC----Cchhhhhhhhh--hccCCCCCccccCCCCcccchhheecCcc--c--cCccc----
Confidence 567889999655 5666665 78899999532 1111111000 001111 122211 0 01111
Q ss_pred EeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhh
Q 001184 615 WDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRAL 668 (1130)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 668 (1130)
..... ...++-+.|+|+|.-|.+.-....|+++|+..++...
T Consensus 268 ------n~~~~------~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 268 ------NLDRY------ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred ------ccccc------eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 11000 0135778999999888888788899999998775443
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.4e-16 Score=150.44 Aligned_cols=183 Identities=14% Similarity=0.237 Sum_probs=130.0
Q ss_pred eeEEEEec--CCCEEEEEeCCeEEEEECCCceeEEEEe-CCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEee-cCeEEE
Q 001184 836 VPCVALSK--NDSYVMSAGGGKVSLFNMMNFKVMTTFM-SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR-VDEVKT 911 (1130)
Q Consensus 836 i~~l~~s~--dg~~la~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~-~~~~~~ 911 (1130)
.++-+||| ||..+++.+|++++.||+++..+...+. +|...|..+.|.|+-..+||+++.||.|+|||.+ +..+++
T Consensus 173 ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~ 252 (370)
T KOG1007|consen 173 FTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQ 252 (370)
T ss_pred ecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccc
Confidence 34455665 8899999999999999999887776665 7888999999999666789999999999999998 457789
Q ss_pred EEecCCCCeeEEEEccCC-CeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEE
Q 001184 912 KLKGHQKHITGLAFSTNL-NILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAI 990 (1130)
Q Consensus 912 ~l~~h~~~V~~l~~s~dg-~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v 990 (1130)
.+.+|+-.|+++.|+|.. ++++++|.|..|.+|...+-............... ++ .+..=++
T Consensus 253 el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~----------e~-------~dseer~ 315 (370)
T KOG1007|consen 253 ELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESES----------ED-------EDSEERV 315 (370)
T ss_pred ccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccC----------cc-------hhhHHhc
Confidence 999999999999999964 57779999999999987762221111111000000 00 0000010
Q ss_pred EECCCceeeeeeecCCCCCCCeEEEEECCCCC-EEEEEeCCCcEEEEeCC
Q 001184 991 YDGSKMECIRQWVPQDVLSSPISSAAYSCNSQ-LIYATFTDGSIGVFDAD 1039 (1130)
Q Consensus 991 ~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~t~~~Dg~i~vwd~~ 1039 (1130)
--+.+ ..+..+..| ...|++++||.-.. ++|+-+.||++.|=.+.
T Consensus 316 kpL~d-g~l~tydeh---EDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 316 KPLQD-GQLETYDEH---EDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccc-ccccccccc---ccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 01111 223344444 78999999998666 56667789999887765
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-16 Score=158.46 Aligned_cols=292 Identities=14% Similarity=0.169 Sum_probs=197.0
Q ss_pred EEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecC--CC-ccEE
Q 001184 470 CIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA--PG-LWCT 545 (1130)
Q Consensus 470 ~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~-~~v~ 545 (1130)
.++++-..|.|++|| .+|+.+..|+++...++.+.|........+++++.||+|++||++.......+.. +. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 678888899999999 8899999999999999999998755667899999999999999998776654433 22 3566
Q ss_pred EEEEecCCCeEEEeeecCCCCcEEEEeeCCCCce-eEEEecccCceeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCc--
Q 001184 546 TMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL-KRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVN-- 621 (1130)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~-- 621 (1130)
+++..-.++.++++..-...+..|.+||.+..+. ++.+...|...|++++|+|.. +.|++|+.||-|.+||+....
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 6666667777777765445588999999988665 666665555589999999976 589999999999999997642
Q ss_pred --eeEEEeccCCCCCcceEEEcCCC-CEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeecccc
Q 001184 622 --MLTSTEAEGGLPSLPRLRFNKEG-NLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITP 698 (1130)
Q Consensus 622 --~~~~~~~~~~~~~i~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 698 (1130)
++.++. +...|..+.|..++ +.+.+.+..++..+|+++.+..... +...............+ ...+...+|
T Consensus 202 DaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~-~~~~~~~~~d~r~~~~~--dY~I~~~~~ 275 (376)
T KOG1188|consen 202 DALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETW-LENPDVSADDLRKEDNC--DYVINEHSP 275 (376)
T ss_pred hhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhc-ccCccchhhhHHhhhhh--hheeecccC
Confidence 222332 22368899998876 4588889999999999988843222 11110000000000000 000001111
Q ss_pred ccccccccCCCCCCCCcccccCCCccccCCCCccc-ccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEec
Q 001184 699 VLSKAERVDRSSPARPSTILNGADSAARGIEKPRN-LEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTN 777 (1130)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 777 (1130)
. +....+ .++..++..++.+..............+. .+|..-|.++.|..
T Consensus 276 ~----------------------------~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~-g~~~eiVR~i~~~~ 326 (376)
T KOG1188|consen 276 G----------------------------DKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQ-GGHEEIVRDILFDV 326 (376)
T ss_pred C----------------------------CcceEEEeccccCceeEEEeeecccccccCcccccc-CCcHHHHHHHhhhc
Confidence 1 111222 22224555555554322222222222222 45778888999999
Q ss_pred cCCeEEEeeeCCeEEeeec
Q 001184 778 SGIGILALWSNGVQKLWKW 796 (1130)
Q Consensus 778 ~g~~l~~~~~dg~i~iw~~ 796 (1130)
.+..+.++|.||.+.+|..
T Consensus 327 ~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 327 KNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ccceeeccCCCceEEEEec
Confidence 9999999999999999974
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.3e-15 Score=140.81 Aligned_cols=283 Identities=11% Similarity=0.119 Sum_probs=197.3
Q ss_pred ceEEEEEeccCCeEEEeeeCCeEEeeecCCC---CCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCC
Q 001184 769 KVARLLYTNSGIGILALWSNGVQKLWKWNRT---EQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1130)
Q Consensus 769 ~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1130)
.|.+-+++|.+++++++..+|.|.++.+..- +..+.++. ... -..+|.+++..++|. .
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~----------------~iv-~eqahdgpiy~~~f~--d 72 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKL----------------KIV-PEQAHDGPIYYLAFH--D 72 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCc----------------cee-eccccCCCeeeeeee--h
Confidence 4556678999999999999999999987642 12222221 110 113799999999997 5
Q ss_pred CEEEEEeCCeEEEEECCCcee----EE--EE-------eCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEE
Q 001184 846 SYVMSAGGGKVSLFNMMNFKV----MT--TF-------MSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK 912 (1130)
Q Consensus 846 ~~la~~~dg~i~iwd~~~~~~----~~--~~-------~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 912 (1130)
.+|++++||.|+-|..+.... .. .. ...-..|+++-..|..+.++. ++.|+.++-||+++|+...+
T Consensus 73 ~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~-AgGD~~~y~~dlE~G~i~r~ 151 (325)
T KOG0649|consen 73 DFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF-AGGDGVIYQVDLEDGRIQRE 151 (325)
T ss_pred hheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE-ecCCeEEEEEEecCCEEEEE
Confidence 688899999999987653221 11 11 112356899999995555554 55899999999999999999
Q ss_pred EecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEecc----CCCCCCCeEEEEEcCCCcEEEEEcCCcE
Q 001184 913 LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLP----AGKLPVGETRVQFHSDQVRLLVNHETQL 988 (1130)
Q Consensus 913 l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~d~~~l~~~~d~~i 988 (1130)
++||++-|.++.--.....++||++||++++||.++++.......... ..+....| .+..-+..+|+++....+
T Consensus 152 ~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi--gala~~edWlvCGgGp~l 229 (325)
T KOG0649|consen 152 YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGGGPKL 229 (325)
T ss_pred EcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCcee--EEEeccCceEEecCCCce
Confidence 999999999999855566889999999999999999876543321111 11111233 344456678999999999
Q ss_pred EEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEE
Q 001184 989 AIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVV 1068 (1130)
Q Consensus 989 ~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1130)
.+|.++..++...+... .++..+.|-.| .++++++.+.|.-|.+. |.+...++. .+..++..
T Consensus 230 slwhLrsse~t~vfpip----a~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~-----------~s~~c~s~ 291 (325)
T KOG0649|consen 230 SLWHLRSSESTCVFPIP----ARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPV-----------ESTACYSA 291 (325)
T ss_pred eEEeccCCCceEEEecc----cceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccC-----------Cccceeee
Confidence 99999999988887664 68888888644 67778878889999875 555544442 11233444
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEe
Q 001184 1069 TSHPQEPNQLAVGLTDGSVKVIE 1091 (1130)
Q Consensus 1069 ~~~~~~~~~l~s~~~Dg~v~vW~ 1091 (1130)
.|.-+--.+|..++..+.+.++.
T Consensus 292 s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 292 SWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred cccCCceEEEEecccceeeeeee
Confidence 44433234566666677776653
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.6e-17 Score=153.15 Aligned_cols=283 Identities=17% Similarity=0.209 Sum_probs=196.7
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeec-CCCccEEEEEEcCCCCE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVK-DSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~spdg~~ 423 (1130)
.|...|+++.|-.+++ |.+|..-|.|++|++.+.+... .+. .|...|+.+.--|+ ..
T Consensus 12 p~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~-------------------~~r~~g~~~it~lq~~p~-d~ 69 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLP-------------------LIRLFGRLFITNLQSIPN-DS 69 (323)
T ss_pred cccchheehhhccchh--hhcccccceEEEEEeecCccch-------------------hhhhhccceeeceeecCC-cc
Confidence 6999999999999986 7899999999999999876553 233 56778999998888 56
Q ss_pred EEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecC-----CCce--EEEEEcCCC-cEEEEe-cCCCeeeEe-
Q 001184 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP-----NKQL--CIVTCGDDK-LIRVWD-LSGRKLFQF- 493 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d-----~~~l--~l~s~s~d~-~v~iwd-~~~~~~~~~- 493 (1130)
|.+-+.|+.+.+|++..+.-+ ..|.-.++++-|.+- ++.. .++.-+... .+++-| .+...+...
T Consensus 70 l~tqgRd~~L~lw~ia~s~~i------~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~d 143 (323)
T KOG0322|consen 70 LDTQGRDPLLILWTIAYSAFI------SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIAD 143 (323)
T ss_pred hhhcCCCceEEEEEccCcceE------EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccC
Confidence 778889999999999875432 234445556655542 1100 111111100 022222 111111111
Q ss_pred ---cCCCcCEEEEeecccCCc-cEEEEEecCCcEEEEEccCCcceee----------ecCCCccEEEEEEecCCCeEEEe
Q 001184 494 ---EGHEAPVYSVCPHQKENI-HFIFSTAVDGKIKAWLYDNVGSRVD----------YDAPGLWCTTMLYSADGSRLFSC 559 (1130)
Q Consensus 494 ---~~h~~~v~~~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~----------~~~~~~~v~~~~~s~~~~~l~~~ 559 (1130)
.+..+.+.+..+...... -+++.|-++|.+.+||+.++..... ...|..+|.++.|.+....=+++
T Consensus 144 d~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisg 223 (323)
T KOG0322|consen 144 DSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISG 223 (323)
T ss_pred chhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCC
Confidence 134456666664333222 3566777899999999998744433 34566789999998766655565
Q ss_pred eecCCCCcEEEEeeCCC--Cce-eEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcc
Q 001184 560 GTSKEGDSHLVEWNESE--GAL-KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLP 636 (1130)
Q Consensus 560 ~~~~~~~~~i~~wd~~~--~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~ 636 (1130)
+. +..+..|++.. +.+ ++.........+..+.+-||++.++++|.|+.||||+.++.+++..++.|.. .|+
T Consensus 224 ga----~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa--gvn 297 (323)
T KOG0322|consen 224 GA----DDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA--GVN 297 (323)
T ss_pred Cc----cccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc--cee
Confidence 54 56677777643 222 1112122333677889999999999999999999999999999999998874 899
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 637 RLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 637 ~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
+++|+|+..++|.++.|+.|.+|++
T Consensus 298 ~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 298 AVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999985
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.4e-17 Score=168.71 Aligned_cols=292 Identities=17% Similarity=0.242 Sum_probs=227.0
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC--CCC
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP--DGN 422 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~ 422 (1130)
.|.+.|..|-|...|. +|++|+.|..|.+||+.++..... +..||...|....|-| +.+
T Consensus 140 ~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFiP~s~d~ 200 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFIPFSGDR 200 (559)
T ss_pred CCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhccCCCCCc
Confidence 3999999999999998 699999999999999998887653 4568999999999988 456
Q ss_pred EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeee---EecCCCc
Q 001184 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLF---QFEGHEA 498 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~---~~~~h~~ 498 (1130)
-|++++.||.|++=.+...........+..|.++|.-++.-|+..+ -|.+++.|+.+.-.| ..+.... .-..+..
T Consensus 201 ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~ 279 (559)
T KOG1334|consen 201 TIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK 279 (559)
T ss_pred CceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeeeccCCc
Confidence 8999999999999887655545545567889999999999999887 799999999999999 4443322 2223333
Q ss_pred ---CEEEEeecccCCccEEEEEecCCcEEEEEccCCcce------eeec------CCCccEEEEEEecCCCeEEEeeecC
Q 001184 499 ---PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR------VDYD------APGLWCTTMLYSADGSRLFSCGTSK 563 (1130)
Q Consensus 499 ---~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~------~~~~------~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1130)
....++.+|.. ...+++++.|..+++||.+..... ..+. .....|++++|+.++.-+++.-.
T Consensus 280 ~~v~L~~Ia~~P~n-t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn-- 356 (559)
T KOG1334|consen 280 ERVGLYTIAVDPRN-TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN-- 356 (559)
T ss_pred cceeeeeEecCCCC-ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec--
Confidence 45677777654 358999999999999998754332 1111 22236999999976655555443
Q ss_pred CCCcEEEEeeCCC--C----------ceeE-EEecccCc-eeEEE-EEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEec
Q 001184 564 EGDSHLVEWNESE--G----------ALKR-TYIGFRKK-SAGVV-QFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA 628 (1130)
Q Consensus 564 ~~~~~i~~wd~~~--~----------~~~~-~~~~~~~~-~v~~~-~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 628 (1130)
+-.|+++...- | ..+. .++||.+. .|..+ .|.|...++++|++-|.|.||+-.+++.+..+.+
T Consensus 357 --De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Meg 434 (559)
T KOG1334|consen 357 --DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEG 434 (559)
T ss_pred --ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhc
Confidence 77788885432 2 2233 38888663 34444 4678889999999999999999999999999988
Q ss_pred cCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001184 629 EGGLPSLPRLRFNKEGNLLVVTTADQGIKILANAD 663 (1130)
Q Consensus 629 ~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 663 (1130)
..+ -|+|+.-+|--..||+.+-|..|+||...+
T Consensus 435 Dr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 435 DRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred ccc--eEeccCCCCCCchhhccCCccceeeecCCc
Confidence 777 699999999999999999999999998643
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.4e-16 Score=153.86 Aligned_cols=275 Identities=13% Similarity=0.165 Sum_probs=191.2
Q ss_pred EEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC--CCCEEEEEeCCCeEEEEEec
Q 001184 362 LLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP--DGNFIGVAFTKHLIHLYTYQ 439 (1130)
Q Consensus 362 llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~las~~~d~~i~vwd~~ 439 (1130)
.+|++...|+|+|||..+|+.+. .+++|...+..++|.. ....+.+|+.||+|++||++
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~-------------------~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLE-------------------EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhh-------------------eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 58888889999999999988775 4778888999999987 46789999999999999999
Q ss_pred CCccceeeeeeecCC-CCeeEEEEecCCCceEEEEEc----CCCcEEEEe-cCCCe-eeE-ecCCCcCEEEEeecccCCc
Q 001184 440 GSNDLCQSLEIDAHV-GGVNDLAFSYPNKQLCIVTCG----DDKLIRVWD-LSGRK-LFQ-FEGHEAPVYSVCPHQKENI 511 (1130)
Q Consensus 440 ~~~~~~~~~~~~~h~-~~V~~i~~s~d~~~l~l~s~s----~d~~v~iwd-~~~~~-~~~-~~~h~~~v~~~~~~~~~~~ 511 (1130)
+.....+. .+.+|. .+..+++....++ ++++|. .|-.|.+|| ...+. +.. ...|...|++++|+|+..
T Consensus 103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p- 178 (376)
T KOG1188|consen 103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP- 178 (376)
T ss_pred cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC-
Confidence 87655433 345555 4566666665666 666664 367899999 43333 444 457999999999999654
Q ss_pred cEEEEEecCCcEEEEEccCCcce---eeecCCCccEEEEEEecCC-CeEEEeeecCCCCcEEEEeeCCCCceeEEEeccc
Q 001184 512 HFIFSTAVDGKIKAWLYDNVGSR---VDYDAPGLWCTTMLYSADG-SRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR 587 (1130)
Q Consensus 512 ~~l~s~s~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 587 (1130)
++|++||.||-|.++|+...... .....+...|..+.|..++ +.|.+.+. .....+|+++.+.....+....
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH----~Etf~~~ele~~~~~~~~~~~~ 254 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH----METFAIYELEDGSEETWLENPD 254 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc----cCceeEEEccCCChhhcccCcc
Confidence 79999999999999999765322 2333455679999999887 33544443 7789999998887554443221
Q ss_pred Cc---------eeEEE-EEcC-CCCEEEEEeC-CCcEEEEeCC---CCc---eeEEEeccCCCCCcceEEEcCCCCEEEE
Q 001184 588 KK---------SAGVV-QFDT-TRNRILAAGE-DNQIKFWDMD---NVN---MLTSTEAEGGLPSLPRLRFNKEGNLLVV 649 (1130)
Q Consensus 588 ~~---------~v~~~-~~~~-~~~~l~~~~~-dg~i~vwd~~---~~~---~~~~~~~~~~~~~i~~v~~s~~~~~l~~ 649 (1130)
-. .-..+ +.+| +...++.++. -+...++-+. ++. .+..+.+ ++..-|.++.|...+.++.+
T Consensus 255 ~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~T 333 (376)
T KOG1188|consen 255 VSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLYT 333 (376)
T ss_pred chhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceeec
Confidence 00 00001 1223 3344555443 5666665443 232 3333333 23446788888888999999
Q ss_pred EeCCCcEEEEEcCCC
Q 001184 650 TTADQGIKILANADG 664 (1130)
Q Consensus 650 ~~~dg~i~iw~~~~~ 664 (1130)
|+.||.+.+|..+..
T Consensus 334 GGEDG~l~~Wk~~da 348 (376)
T KOG1188|consen 334 GGEDGLLQAWKVEDA 348 (376)
T ss_pred cCCCceEEEEecCCc
Confidence 999999999986443
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.6e-16 Score=149.29 Aligned_cols=307 Identities=14% Similarity=0.172 Sum_probs=197.2
Q ss_pred eeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEE
Q 001184 534 RVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIK 613 (1130)
Q Consensus 534 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 613 (1130)
.+.+..+...++++.|-.+++ |.++.. .|.|.+|++.+.+....+.++....++.+..-|+ ..+.+-+.|..+.
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~----~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~ 80 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER-LMSGLS----VGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLI 80 (323)
T ss_pred eeEeccccchheehhhccchh-hhcccc----cceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEE
Confidence 344556777899999998887 555543 8999999999999888888777768888888876 6788999999999
Q ss_pred EEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCC-cEEEEEcCCCchhhhhhcccccccccccccccccccce
Q 001184 614 FWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQ-GIKILANADGLRALRAIETRAYETSRASTEMKVPGSAV 692 (1130)
Q Consensus 614 vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1130)
+|++..+..+..-.. .++++-|.+-. +...+... .+..++-+...+ ....++.. .
T Consensus 81 lw~ia~s~~i~i~Si-----~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde-~h~~D~g~---------------~- 136 (323)
T KOG0322|consen 81 LWTIAYSAFISIHSI-----VVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE-THKQDGGD---------------T- 136 (323)
T ss_pred EEEccCcceEEEeee-----eccccccccce--eccCCCcchhheecCCcccch-hhhhccCc---------------c-
Confidence 999988665544332 33444444321 11111110 111111111000 00000000 0
Q ss_pred eeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEE
Q 001184 693 VTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVAR 772 (1130)
Q Consensus 693 ~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 772 (1130)
-.+++-+-. ..+..+.+.+
T Consensus 137 ----------------------------------------------tqv~i~dd~---------------~~~Klgsvmc 155 (323)
T KOG0322|consen 137 ----------------------------------------------TQVQIADDS---------------ERSKLGSVMC 155 (323)
T ss_pred ----------------------------------------------ceeEccCch---------------hccccCceee
Confidence 000000000 0112222333
Q ss_pred EEEec-cCC--eEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEE
Q 001184 773 LLYTN-SGI--GILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVM 849 (1130)
Q Consensus 773 l~~s~-~g~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la 849 (1130)
..+.. ++. .+++|-++|.+.+||++.+....+.. ..|.... .. ..|..++.++.+.+.-..=+
T Consensus 156 ~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~-------~~~kv~~------~~-ash~qpvlsldyas~~~rGi 221 (323)
T KOG0322|consen 156 QDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLP-------QSSKVES------PN-ASHKQPVLSLDYASSCDRGI 221 (323)
T ss_pred eeccccccceEEEEEeccCCeEEEEEccCCceeeccc-------ccccccc------ch-hhccCcceeeeechhhcCCc
Confidence 33211 122 35566679999999988753221111 1111110 01 15889999999987655555
Q ss_pred EEe-CCeEEEEECCC--c--eeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEE
Q 001184 850 SAG-GGKVSLFNMMN--F--KVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLA 924 (1130)
Q Consensus 850 ~~~-dg~i~iwd~~~--~--~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~ 924 (1130)
+|+ +..+..|+++. + +...+.......|..+.+-| |++++|++++|+.||||..++..++..++.|++.|.+++
T Consensus 222 sgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vA 300 (323)
T KOG0322|consen 222 SGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVA 300 (323)
T ss_pred CCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEE
Confidence 666 67788887753 2 22233344456788999999 999999999999999999999999999999999999999
Q ss_pred EccCCCeEEEEeCCCcEEEEEC
Q 001184 925 FSTNLNILVSSGSDAQLIFWNT 946 (1130)
Q Consensus 925 ~s~dg~~L~s~s~Dg~i~vwd~ 946 (1130)
|+||...+|.++.|+.|.+|++
T Consensus 301 fspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 301 FSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999986
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.5e-14 Score=159.00 Aligned_cols=146 Identities=15% Similarity=0.173 Sum_probs=95.8
Q ss_pred EEEEecCCcEEEEEccCCcc---eeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC-CCceeEEEecccCc
Q 001184 514 IFSTAVDGKIKAWLYDNVGS---RVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES-EGALKRTYIGFRKK 589 (1130)
Q Consensus 514 l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~ 589 (1130)
.++...++.|.+|++.+... ...+. .......++++|++++|++++. .++.|.+|++. ++.....-......
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~---~~~~i~~~~~~~~g~l~~~~~~~~~~ 80 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVR---PEFRVLSYRIADDGALTFAAESPLPG 80 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEEC---CCCcEEEEEECCCCceEEeeeecCCC
Confidence 34447789999999974332 22232 3345778999999999988753 26789999886 34332111111122
Q ss_pred eeEEEEEcCCCCEEEEEeC-CCcEEEEeCCC-CceeEEEeccCCCCCcceEEEcCCCCEEEEEe-CCCcEEEEEcCC
Q 001184 590 SAGVVQFDTTRNRILAAGE-DNQIKFWDMDN-VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT-ADQGIKILANAD 663 (1130)
Q Consensus 590 ~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~-~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~-~dg~i~iw~~~~ 663 (1130)
....++++|+++++++++. ++.|.+|++++ +..........+......++++|+++++++++ .++.|.+|++.+
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence 4567999999999888764 88999999974 32211111111122457788999999886555 568999999865
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-14 Score=161.87 Aligned_cols=196 Identities=11% Similarity=0.137 Sum_probs=128.5
Q ss_pred eEEEEecCCCEEEEEe--CCeEEEEECCC-c---eeEEEEeCCCCCeEEEEEeCCCCcEE-EEEeCCCcEEEEEeecCeE
Q 001184 837 PCVALSKNDSYVMSAG--GGKVSLFNMMN-F---KVMTTFMSPPPASTFLAFHPQDNNII-AIGMEDSTIQIYNVRVDEV 909 (1130)
Q Consensus 837 ~~l~~s~dg~~la~~~--dg~i~iwd~~~-~---~~~~~~~~~~~~i~~l~~sp~~~~~l-asg~~dg~v~iwd~~~~~~ 909 (1130)
..++++|+++++++++ ++.|.+|++.+ + +.+..+. +......++++| +++++ ++...++.|.+||+.+...
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCc
Confidence 4577778888777765 57788887753 2 1222222 223467789999 66655 5555679999999986332
Q ss_pred EE-------EEecCCCCeeEEEEccCCCeEEEEeC-CCcEEEEECCCC--cccceeeEec-cCC-CCCCCeEEEEEcCCC
Q 001184 910 KT-------KLKGHQKHITGLAFSTNLNILVSSGS-DAQLIFWNTDTW--EKRKSIAIQL-PAG-KLPVGETRVQFHSDQ 977 (1130)
Q Consensus 910 ~~-------~l~~h~~~V~~l~~s~dg~~L~s~s~-Dg~i~vwd~~~~--~~~~~~~~~~-~~~-~~~~~v~~~~~s~d~ 977 (1130)
+. .... ......++|+|||++|+++.. +++|.+|+++.. +......... +.. ..+.....+.++|++
T Consensus 161 l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 161 LVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred ccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 21 1111 233568999999999988876 899999999842 2211111111 111 111233468999999
Q ss_pred cEEEEE--cCCcEEEEECCCce----eeeeeecCCCCCCCeEEEEECCCCCEEEEEeC-CCcEEEEeCC
Q 001184 978 VRLLVN--HETQLAIYDGSKME----CIRQWVPQDVLSSPISSAAYSCNSQLIYATFT-DGSIGVFDAD 1039 (1130)
Q Consensus 978 ~~l~~~--~d~~i~v~d~~~~~----~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~-Dg~i~vwd~~ 1039 (1130)
++++++ .++.|.+|++.... .+..... ......++|+|||++|+++.. +++|.+|+++
T Consensus 240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~----~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPT----ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec----cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 999986 36889999986432 2232222 124557899999999998885 8999999874
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.6e-16 Score=149.25 Aligned_cols=228 Identities=16% Similarity=0.231 Sum_probs=172.6
Q ss_pred CCeEEEEECCCc--ee-EEEEeCCCCCeEEEEEeCCCCcEEEEEeCC-------CcEEEEEeecC---------eEEEEE
Q 001184 853 GGKVSLFNMMNF--KV-MTTFMSPPPASTFLAFHPQDNNIIAIGMED-------STIQIYNVRVD---------EVKTKL 913 (1130)
Q Consensus 853 dg~i~iwd~~~~--~~-~~~~~~~~~~i~~l~~sp~~~~~lasg~~d-------g~v~iwd~~~~---------~~~~~l 913 (1130)
++.|.+.++... .. .+.+..|.+.|..++-+|.+.++|++...+ ..+.||.+... +++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 577887776543 22 234667789999999999888899887663 13779988642 344455
Q ss_pred e-cCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcC--CCcEEEEEcCCcEEE
Q 001184 914 K-GHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHS--DQVRLLVNHETQLAI 990 (1130)
Q Consensus 914 ~-~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~d~~i~v 990 (1130)
. .+-+.|.|+.|.|++..|++-. |..|.+|++..+...................++-+|+| ||..+++..|++++.
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~ 197 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQF 197 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEE
Confidence 4 5667999999999999999887 77899999998765322222222222335677788888 899999999999999
Q ss_pred EECCCceeeeeeecCCCCCCCeEEEEECCCCC-EEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEE
Q 001184 991 YDGSKMECIRQWVPQDVLSSPISSAAYSCNSQ-LIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVT 1069 (1130)
Q Consensus 991 ~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1130)
||+++.++...+.. +|...|..+.|.|+.+ +|++++.||.|++||.+.-+....-. ++|+-++-++.
T Consensus 198 ~D~RT~~~~~sI~d--AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el----------~~HsHWvW~VR 265 (370)
T KOG1007|consen 198 WDLRTMKKNNSIED--AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL----------PGHSHWVWAVR 265 (370)
T ss_pred EEccchhhhcchhh--hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc----------CCCceEEEEEE
Confidence 99998887766653 4578899999999977 88899999999999988655432221 33444556788
Q ss_pred EcCCCCCEEEEEeCCCcEEEEeCC
Q 001184 1070 SHPQEPNQLAVGLTDGSVKVIEPS 1093 (1130)
Q Consensus 1070 ~~~~~~~~l~s~~~Dg~v~vW~~~ 1093 (1130)
|+|...++|++||.|..|.+|-..
T Consensus 266 fn~~hdqLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 266 FNPEHDQLILSGGSDSAVNLSCAS 289 (370)
T ss_pred ecCccceEEEecCCCceeEEEecc
Confidence 999888999999999999999875
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.5e-15 Score=146.78 Aligned_cols=404 Identities=12% Similarity=0.106 Sum_probs=235.5
Q ss_pred EEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEE-eCC
Q 001184 352 SMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA-FTK 430 (1130)
Q Consensus 352 ~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~-~~d 430 (1130)
-+.|||+|++ +|+.+.- .+.|=|.++-+...-. ---..|..+.|+.|.-++..+ ..|
T Consensus 13 ~c~fSp~g~y-iAs~~~y-rlviRd~~tlq~~qlf--------------------~cldki~yieW~ads~~ilC~~yk~ 70 (447)
T KOG4497|consen 13 FCSFSPCGNY-IASLSRY-RLVIRDSETLQLHQLF--------------------LCLDKIVYIEWKADSCHILCVAYKD 70 (447)
T ss_pred ceeECCCCCe-eeeeeee-EEEEeccchhhHHHHH--------------------HHHHHhhheeeeccceeeeeeeecc
Confidence 4789999995 8887754 7888888876654310 012368889999998876654 678
Q ss_pred CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCCCcCEEEEeecccCC
Q 001184 431 HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKEN 510 (1130)
Q Consensus 431 ~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~ 510 (1130)
+.|.+|++...+-.. .+....+++.+++|||||++ +|.+...|-.|.+|....+...-+.-....+..++|++ +
T Consensus 71 ~~vqvwsl~Qpew~c---kIdeg~agls~~~WSPdgrh-iL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~--d 144 (447)
T KOG4497|consen 71 PKVQVWSLVQPEWYC---KIDEGQAGLSSISWSPDGRH-ILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHP--D 144 (447)
T ss_pred ceEEEEEeecceeEE---EeccCCCcceeeeECCCcce-EeeeecceeEEEEEEeccceeEEecccccCceeEEECC--C
Confidence 899999998754322 46667788999999999987 78888899999999955554455554455667888865 5
Q ss_pred ccEEEEEecCCcEEEEEcc---CCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEeccc
Q 001184 511 IHFIFSTAVDGKIKAWLYD---NVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR 587 (1130)
Q Consensus 511 ~~~l~s~s~dg~i~vwd~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 587 (1130)
|++.+..+.-......++. .-.....+.......+.+.|+|||+.|++- |.--.-.+..+ +.
T Consensus 145 g~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVw-------------d~~Leykv~aY--e~ 209 (447)
T KOG4497|consen 145 GQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVW-------------DNVLEYKVYAY--ER 209 (447)
T ss_pred CceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEe-------------cchhhheeeee--ee
Confidence 5676666543221111111 111122344445567889999999887764 32111111122 23
Q ss_pred CceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchh
Q 001184 588 KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRA 667 (1130)
Q Consensus 588 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 667 (1130)
+-.+..+.|+|.+++++.|+.|+.+||.+--+-+.+..+-... .+. |.++.+..-+.. +.
T Consensus 210 ~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~---s~~----------------dp~~~~~~ke~~-~~ 269 (447)
T KOG4497|consen 210 GLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLC---SYH----------------DPTLHLLEKETF-SI 269 (447)
T ss_pred ccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccch---hcc----------------Cchhhhhhhhhc-ch
Confidence 3357789999999999999999999998766555443332110 111 111000000000 00
Q ss_pred hhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeec
Q 001184 668 LRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELT 747 (1130)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~ 747 (1130)
.. +..+-. +|.|..-.+.... ..-.+|+..
T Consensus 270 ~q-l~~~cL------------------sf~p~~~~a~~~~-------------------------------~se~~YE~~ 299 (447)
T KOG4497|consen 270 VQ-LLHHCL------------------SFTPTDLEAHIWE-------------------------------ESETIYEQQ 299 (447)
T ss_pred hh-hccccc------------------ccCCCccccCccc-------------------------------cchhhhhhh
Confidence 00 000000 0111000000000 000000000
Q ss_pred cccCCcceeEEE-ecCCCCCccceEEEEEeccCCeEEEeeeC--CeEEeeecCCCCCCCCcccccccccccccCCCCcce
Q 001184 748 EIVDPLQCRVVA-MPESTDSASKVARLLYTNSGIGILALWSN--GVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLM 824 (1130)
Q Consensus 748 ~~~~~~~~~~~~-~~~~~~~~~~i~~l~~s~~g~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 824 (1130)
.. +....... ..+.+...-.+.-++|++|..++++-.+. +.+-+||+ +.-++.
T Consensus 300 ~~--pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdl----------------------q~l~l~ 355 (447)
T KOG4497|consen 300 MT--PVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDL----------------------QNLKLH 355 (447)
T ss_pred hc--ceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEec----------------------hhhhhh
Confidence 00 00000000 00012245567789999999998887764 45555554 333322
Q ss_pred eccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCC
Q 001184 825 TNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS 897 (1130)
Q Consensus 825 ~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg 897 (1130)
... ....+|....|.|....|+.+. ...+++|......++..- ...-.|..++|.- +|..++..+.|.
T Consensus 356 avL---iQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP-~~GF~i~~l~W~~-~g~~i~l~~kDa 424 (447)
T KOG4497|consen 356 AVL---IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP-KKGFNIQKLQWLQ-PGEFIVLCGKDA 424 (447)
T ss_pred hhh---hhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC-CCCceeeeEEecC-CCcEEEEEcCCc
Confidence 221 2477899999999998888876 566999999875555443 2346799999998 777887777774
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-14 Score=136.73 Aligned_cols=280 Identities=16% Similarity=0.225 Sum_probs=191.2
Q ss_pred CEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEe
Q 001184 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF 428 (1130)
Q Consensus 349 ~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~ 428 (1130)
.|.+-++||.++ +|+.|..+|.|.+..+++-..-... .....+.-...+|.++|+.++|. ..+|++|+
T Consensus 12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa~---------~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSAE---------PPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhccccC---------CCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 455668899998 5899999999999998642111000 00011111347999999999998 45777776
Q ss_pred CCCeEEEEEecCCcc---ceeee--eeecCC-----CCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCC
Q 001184 429 TKHLIHLYTYQGSND---LCQSL--EIDAHV-----GGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHE 497 (1130)
Q Consensus 429 ~d~~i~vwd~~~~~~---~~~~~--~~~~h~-----~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~ 497 (1130)
||.|+-|....... .+... ....|. ..|+++-..|... -++.++.|+.++-|| .+|+...+++||+
T Consensus 80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 59999998754322 11100 112233 3588999998877 467777899999999 9999999999999
Q ss_pred cCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCC----------CccEEEEEEecCCCeEEEeeecCCCCc
Q 001184 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP----------GLWCTTMLYSADGSRLFSCGTSKEGDS 567 (1130)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~~~~~~~~~~~ 567 (1130)
+.|.++.-.. ....+++|+.||++|+||.++.+....+... +.+|.+++ -+..++++++ ..
T Consensus 157 DYvH~vv~R~--~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGg-----Gp 227 (325)
T KOG0649|consen 157 DYVHSVVGRN--ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGG-----GP 227 (325)
T ss_pred ceeeeeeecc--cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecC-----CC
Confidence 9999997532 2247899999999999999998887755432 22455554 4566888876 67
Q ss_pred EEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCC-CCE
Q 001184 568 HLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE-GNL 646 (1130)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~-~~~ 646 (1130)
.+.+|.++..++...+.-. . .+..+.|. .+.+++++..+.+.-|.+. |..........+ ..++..++.. -++
T Consensus 228 ~lslwhLrsse~t~vfpip-a-~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~--~c~s~s~~~~p~k~ 300 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFPIP-A-RVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIPVEST--ACYSASWQTSPIKF 300 (325)
T ss_pred ceeEEeccCCCceEEEecc-c-ceeEeeee--cceEEEeccccceeeeeec-cEEEEeccCCcc--ceeeecccCCceEE
Confidence 8999999999888887642 2 56667775 4578888888899999874 444444443332 3444444432 234
Q ss_pred EEEEeCCCcEEEE
Q 001184 647 LVVTTADQGIKIL 659 (1130)
Q Consensus 647 l~~~~~dg~i~iw 659 (1130)
+-.++..+.+.|+
T Consensus 301 ~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 301 ISIAGFSNKLHIL 313 (325)
T ss_pred EEecccceeeeee
Confidence 4455556666655
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8e-15 Score=165.40 Aligned_cols=201 Identities=16% Similarity=0.207 Sum_probs=149.5
Q ss_pred EEecCCCEEEEEe-CCeEEEEECCCceeEEEEeC-CCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecC---eEEEEEe
Q 001184 840 ALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMS-PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD---EVKTKLK 914 (1130)
Q Consensus 840 ~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~---~~~~~l~ 914 (1130)
.|-....+|.+++ -..|+|||.....+...+.. ...-++++.-+-..|.++|.|..||.|++||.+.. ..+...+
T Consensus 1172 dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R 1251 (1387)
T KOG1517|consen 1172 DWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR 1251 (1387)
T ss_pred ehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec
Confidence 4444334444444 57799999988777777653 34457777665546799999999999999998743 4677888
Q ss_pred cCCCC--eeEEEEccCCC-eEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEE
Q 001184 915 GHQKH--ITGLAFSTNLN-ILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIY 991 (1130)
Q Consensus 915 ~h~~~--V~~l~~s~dg~-~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~ 991 (1130)
.|+.. |..+.+-+.|- .|++|+.||.|++||+............. .-...+..+++..+++...+|+++.+.|.||
T Consensus 1252 ~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~-~~~yGs~lTal~VH~hapiiAsGs~q~ikIy 1330 (1387)
T KOG1517|consen 1252 EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA-HWEYGSALTALTVHEHAPIIASGSAQLIKIY 1330 (1387)
T ss_pred ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee-ccccCccceeeeeccCCCeeeecCcceEEEE
Confidence 99988 99999988775 49999999999999999853222221111 1111235899999999999999877999999
Q ss_pred ECCCceeeeeeecCCC----CCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcc
Q 001184 992 DGSKMECIRQWVPQDV----LSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLR 1042 (1130)
Q Consensus 992 d~~~~~~~~~~~~~~~----~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~ 1042 (1130)
++. |+.+..+..... ....+.|++|.|-.-+||+|+.|.+|.||..++.+
T Consensus 1331 ~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1331 SLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 987 333333332211 14678999999999999999999999999887655
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-13 Score=139.10 Aligned_cols=241 Identities=10% Similarity=0.117 Sum_probs=181.9
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCC
Q 001184 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG 487 (1130)
Q Consensus 409 ~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~ 487 (1130)
...+..+.|..|...|..|+.|| -++|..+.-.... ........|--+-|+.. .+.+++...-+.+++.+ .++
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccC
Confidence 34577788999999999999999 6788876533211 11222234555556543 21333333334589999 666
Q ss_pred CeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCC---CccEEEEEEecCCCeEEEeeecCC
Q 001184 488 RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP---GLWCTTMLYSADGSRLFSCGTSKE 564 (1130)
Q Consensus 488 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~~~~ 564 (1130)
..+..+. ...+|.++.++. +.|+.+=. ..|.|||+++.+...++... ...+.++.+++.+.+++.-+. .
T Consensus 79 ~~ICe~~-fpt~IL~VrmNr----~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s--~ 150 (391)
T KOG2110|consen 79 TTICEIF-FPTSILAVRMNR----KRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS--T 150 (391)
T ss_pred ceEEEEe-cCCceEEEEEcc----ceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC--C
Confidence 6676665 567788887753 34544443 44999999998877765443 345777777777889987653 3
Q ss_pred CCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCc-EEEEeCCCCceeEEEeccCCCCCcceEEEcCC
Q 001184 565 GDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQ-IKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1130)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~ 643 (1130)
..|.|++||..+-+.+..+..|.+ .+.+++|+++|.+||++++.|+ |||+.+.+|+.+..+........|.+++|+|+
T Consensus 151 t~GdV~l~d~~nl~~v~~I~aH~~-~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d 229 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTINAHKG-PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD 229 (391)
T ss_pred CCceEEEEEcccceeeeEEEecCC-ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC
Confidence 378999999999999999998766 8999999999999999999997 79999999999999887666667999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCC
Q 001184 644 GNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+.+|++.+..++|.++.++..
T Consensus 230 s~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 230 SQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCeEEEecCCCeEEEEEeccc
Confidence 999999999999999998764
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.6e-15 Score=165.40 Aligned_cols=275 Identities=16% Similarity=0.244 Sum_probs=202.5
Q ss_pred CCCCCcccccCCcccceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeee
Q 001184 324 VPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAA 403 (1130)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1130)
+++...+|+.++. ...-..+.-...|+|++|+|....++|.|+.+|.|.+||+..+........ ..
T Consensus 220 ~~~~~~vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~l-------------s~ 285 (555)
T KOG1587|consen 220 PDGVLLVWSLKNP-NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGL-------------SA 285 (555)
T ss_pred CCceEEEEecCCC-CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccc-------------cc
Confidence 3346778888886 556666778899999999999988999999999999999988765311011 11
Q ss_pred eecCCCccEEEEEEcCCCC--EEEEEeCCCeEEEEEecCCccceeeeee--e-------cCCCCeeEEEEecCCCceEEE
Q 001184 404 IVKDSSISVSRVAWSPDGN--FIGVAFTKHLIHLYTYQGSNDLCQSLEI--D-------AHVGGVNDLAFSYPNKQLCIV 472 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~--~las~~~d~~i~vwd~~~~~~~~~~~~~--~-------~h~~~V~~i~~s~d~~~l~l~ 472 (1130)
....|..+|+.+.|-.+-. -+++++.||.|..|+++.-........+ . .-...+++++|.+.... .++
T Consensus 286 ~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~Fi 364 (555)
T KOG1587|consen 286 LEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFI 364 (555)
T ss_pred ccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEE
Confidence 3457999999999987644 4999999999999988643221110001 1 11236899999997776 799
Q ss_pred EEcCCCcEEEEe---cCCCe------eeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEcc-CCcceeeecCCCc
Q 001184 473 TCGDDKLIRVWD---LSGRK------LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYD-NVGSRVDYDAPGL 542 (1130)
Q Consensus 473 s~s~d~~v~iwd---~~~~~------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~ 542 (1130)
.|+++|.|.-=+ .+-.. +..+..|.++|.++.++|-.. ..+++++ |-++++|.-. .......+..+..
T Consensus 365 VGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~ 442 (555)
T KOG1587|consen 365 VGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPD 442 (555)
T ss_pred EEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccc
Confidence 999999988733 22222 345667899999999877554 3444544 9999999887 6666667777777
Q ss_pred cEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc--eeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001184 543 WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA--LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1130)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 619 (1130)
.+++++|||-.-.++++. +++|.|.+||+.... ++.+..-. ......+.|++.|+.+++|...|.+.+|++..
T Consensus 443 ~v~~vaWSptrpavF~~~---d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 443 YVTDVAWSPTRPAVFATV---DGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred eeeeeEEcCcCceEEEEE---cCCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 899999999887766665 459999999986533 33333332 33567788999999999999999999999864
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-14 Score=139.81 Aligned_cols=288 Identities=14% Similarity=0.247 Sum_probs=205.4
Q ss_pred eeeccCCCCEEEEEEe--cCCCeEEEEEeC----cCeEEEEeC--CCCceeecccceeeeccccccceeeeeecCCCccE
Q 001184 341 ACTMHQGSSVVSMDFH--PFHHTLLVVGCG----DGEITLWDV--GLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISV 412 (1130)
Q Consensus 341 ~~~~~h~~~V~~v~fs--pdg~~llasg~~----dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 412 (1130)
+..+.-.-.+.++.|| |+.+..||.|+. .+.|.|-.+ ++++.+... --.|.-++
T Consensus 38 iy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a------------------~fd~~YP~ 99 (364)
T KOG0290|consen 38 IYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDA------------------NFDHPYPV 99 (364)
T ss_pred EEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccC------------------CCCCCCCc
Confidence 4555666789999999 666667899874 245555544 344444321 13688899
Q ss_pred EEEEEcCCCC-----EEEEEeCCCeEEEEEecCCc-cceee-----eeeecCCCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001184 413 SRVAWSPDGN-----FIGVAFTKHLIHLYTYQGSN-DLCQS-----LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR 481 (1130)
Q Consensus 413 ~~v~~spdg~-----~las~~~d~~i~vwd~~~~~-~~~~~-----~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~ 481 (1130)
+.+.|.||.+ +||+++ ..+|+|.+...+ .+... .+-..+.+++++..|+.-... ++.++|-|.+..
T Consensus 100 tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTCT 176 (364)
T KOG0290|consen 100 TKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTCT 176 (364)
T ss_pred cceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeEE
Confidence 9999999863 677664 369999987421 11111 112346678999999986665 799999999999
Q ss_pred EEe-cCC---CeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceee-ecCC--CccEEEEEEec-CC
Q 001184 482 VWD-LSG---RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD-YDAP--GLWCTTMLYSA-DG 553 (1130)
Q Consensus 482 iwd-~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~--~~~v~~~~~s~-~~ 553 (1130)
||| .+| .....+..|..+|..++|.. +.-+.+++.|.||.+|+||++..+.... ++.. ..+...++|++ |-
T Consensus 177 iWdie~~~~~~vkTQLIAHDKEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDp 255 (364)
T KOG0290|consen 177 IWDIETGVSGTVKTQLIAHDKEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDP 255 (364)
T ss_pred EEEEeeccccceeeEEEecCcceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCc
Confidence 999 554 34566789999999999976 4457899999999999999998765443 2222 34778888887 45
Q ss_pred CeEEEeeecCCCCcEEEEeeCCCC-ceeEEEecccCceeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCce------eEE
Q 001184 554 SRLFSCGTSKEGDSHLVEWNESEG-ALKRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVNM------LTS 625 (1130)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~------~~~ 625 (1130)
+++|+... ....|.+.|++.. ..+..+.+|.. .|+.++|.|.. ..|.++|+|..+.+||+...-. +..
T Consensus 256 nymATf~~---dS~~V~iLDiR~P~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPila 331 (364)
T KOG0290|consen 256 NYMATFAM---DSNKVVILDIRVPCTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILA 331 (364)
T ss_pred hHHhhhhc---CCceEEEEEecCCCcceehhhcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhh
Confidence 66776654 2677999999864 56778888766 89999999976 5899999999999999976322 112
Q ss_pred EeccCCCCCcceEEEcC-CCCEEEEEeCCCcEEE
Q 001184 626 TEAEGGLPSLPRLRFNK-EGNLLVVTTADQGIKI 658 (1130)
Q Consensus 626 ~~~~~~~~~i~~v~~s~-~~~~l~~~~~dg~i~i 658 (1130)
.. ....|+.+.|++ .+.+++.+.. +.+.+
T Consensus 332 y~---a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 332 YT---AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred hh---ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 22 223689999996 5667776654 34444
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.4e-14 Score=142.95 Aligned_cols=242 Identities=11% Similarity=0.189 Sum_probs=188.8
Q ss_pred CCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCC--CcEEEEEeecCeE
Q 001184 832 AEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED--STIQIYNVRVDEV 909 (1130)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~d--g~v~iwd~~~~~~ 909 (1130)
....+..+.|+.|...|..|+....++|+................|..+-|+. .++|..+.+ +.+++++++.+..
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCce
Confidence 34556777899999999999977788898877655433334445577777865 366655544 3599999998888
Q ss_pred EEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE---EcCC
Q 001184 910 KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV---NHET 986 (1130)
Q Consensus 910 ~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~---~~d~ 986 (1130)
+..+. ...+|.++.++ .++|+++=.+. |+|||++.-+..+...... .++.++.++.++..+.+++. ...|
T Consensus 81 ICe~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~---~n~~gl~AlS~n~~n~ylAyp~s~t~G 153 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTP---PNPKGLCALSPNNANCYLAYPGSTTSG 153 (391)
T ss_pred EEEEe-cCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccC---CCccceEeeccCCCCceEEecCCCCCc
Confidence 87766 44679999996 45777776665 9999999966554432221 23356777788888889997 2478
Q ss_pred cEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCc-EEEEeCCCcccccccCCCcccccCCCCCceeee
Q 001184 987 QLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGS-IGVFDADSLRLRCRIAPSAYMSQASPNSQTVFP 1065 (1130)
Q Consensus 987 ~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1130)
.|.+||+.+.+.+..+..| .+++.+++|++||.+|||+++.|+ |||+.+.+|+.+..++...+ ....
T Consensus 154 dV~l~d~~nl~~v~~I~aH---~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~---------~~~I 221 (391)
T KOG2110|consen 154 DVVLFDTINLQPVNTINAH---KGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY---------PVSI 221 (391)
T ss_pred eEEEEEcccceeeeEEEec---CCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce---------eeEE
Confidence 9999999999999998876 899999999999999999999887 89999999999999985542 4556
Q ss_pred EEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q 001184 1066 LVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1096 (1130)
Q Consensus 1066 ~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~ 1096 (1130)
.+++|+|+ ..+|++.|..++|++|++.+..
T Consensus 222 ySL~Fs~d-s~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 222 YSLSFSPD-SQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEECCC-CCeEEEecCCCeEEEEEecccc
Confidence 78999994 7899999999999999998766
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.1e-15 Score=167.75 Aligned_cols=235 Identities=14% Similarity=0.127 Sum_probs=164.7
Q ss_pred cCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCC---CeEEEEEecCCccce
Q 001184 369 DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTK---HLIHLYTYQGSNDLC 445 (1130)
Q Consensus 369 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d---~~i~vwd~~~~~~~~ 445 (1130)
+..|.|||....... .+..|...+.+.+|||||++||.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~--------------------~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQF--------------------IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCce--------------------EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 468999998765432 355778889999999999999988654 379999998875322
Q ss_pred eeeeeecCCCCeeEEEEecCCCceEEEE-EcCCCcEEEE--ecCCCeeeEecCCCcCEEEEeecccCCccEEEEE-ecCC
Q 001184 446 QSLEIDAHVGGVNDLAFSYPNKQLCIVT-CGDDKLIRVW--DLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFST-AVDG 521 (1130)
Q Consensus 446 ~~~~~~~h~~~V~~i~~s~d~~~l~l~s-~s~d~~v~iw--d~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-s~dg 521 (1130)
...+.+| ...++|+|||+ .|+. .+.+|.+.|| |..+..+..+..+...+....|+| |+..|+.. ..+|
T Consensus 243 -l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~g 314 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSP--DGQSILFTSDRSG 314 (429)
T ss_pred -EecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECC--CCCEEEEEECCCC
Confidence 2233344 44689999999 4554 4568876666 555556677777777788888865 45655544 4678
Q ss_pred cEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCC
Q 001184 522 KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN 601 (1130)
Q Consensus 522 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 601 (1130)
...+|+++..........+.. ....|+|||++|+..+. ..+.+||+.+++........ ....+.|+|+|+
T Consensus 315 ~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG~ 384 (429)
T PRK01742 315 SPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF---LDESPSISPNGI 384 (429)
T ss_pred CceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC---CCCCceECCCCC
Confidence 889998765433222222222 45789999999988763 34777999888765433222 234577999999
Q ss_pred EEEEEeCCCcEEEEeC--CCCceeEEEeccCCCCCcceEEEcCC
Q 001184 602 RILAAGEDNQIKFWDM--DNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1130)
Q Consensus 602 ~l~~~~~dg~i~vwd~--~~~~~~~~~~~~~~~~~i~~v~~s~~ 643 (1130)
+|+.++.++.+.+|.+ .+|+.+..+..+.+ .+...+|+|-
T Consensus 385 ~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g--~~~~p~wsp~ 426 (429)
T PRK01742 385 MIIYSSTQGLGKVLQLVSADGRFKARLPGSDG--QVKFPAWSPY 426 (429)
T ss_pred EEEEEEcCCCceEEEEEECCCCceEEccCCCC--CCCCcccCCC
Confidence 9999999998888875 35777777764443 6788899884
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.5e-14 Score=158.77 Aligned_cols=250 Identities=16% Similarity=0.161 Sum_probs=182.2
Q ss_pred CCCccEEEEEEcC-CCCEEEEEeCCCeEEEEEecCCccc--e-eeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001184 407 DSSISVSRVAWSP-DGNFIGVAFTKHLIHLYTYQGSNDL--C-QSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRV 482 (1130)
Q Consensus 407 ~h~~~V~~v~~sp-dg~~las~~~d~~i~vwd~~~~~~~--~-~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~i 482 (1130)
.-...|+|+.|+| +..++|.|+.+|.|.+||+..+... . .......|..+++.+.|..+-...-+++++.||.|..
T Consensus 240 ~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~ 319 (555)
T KOG1587|consen 240 ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICS 319 (555)
T ss_pred ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEee
Confidence 3456899999999 6778888999999999999887652 1 1112356889999999987654335899999999999
Q ss_pred EecCCCe-------eeEec------CCCcCEEEEeecccCCccEEEEEecCCcEEEEEc---cCCc-----ceeeecCCC
Q 001184 483 WDLSGRK-------LFQFE------GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLY---DNVG-----SRVDYDAPG 541 (1130)
Q Consensus 483 wd~~~~~-------~~~~~------~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~---~~~~-----~~~~~~~~~ 541 (1130)
|+.+.-. ..... .-...++++.|.+... ..++.|+.+|.|.--+. +... ....+..|.
T Consensus 320 W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p-~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~ 398 (555)
T KOG1587|consen 320 WDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP-NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHI 398 (555)
T ss_pred eeccccccchhhcccccccccccccccccceeeEeeccCCC-ceEEEEcCCcEEEEEeccCCcccccccccccccccccC
Confidence 9832211 11111 1234678888876543 67889999999876332 2222 122556677
Q ss_pred ccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC-CCceeEEEecccCceeEEEEEcCCCC-EEEEEeCCCcEEEEeCCC
Q 001184 542 LWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES-EGALKRTYIGFRKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDN 619 (1130)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~ 619 (1130)
++|+++.++|-+..++..+. |-.+++|... ...++..+..+.+ .+..++|||... .++++..||.|.+||+..
T Consensus 399 g~v~~v~~nPF~~k~fls~g----DW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 399 GPVYAVSRNPFYPKNFLSVG----DWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred cceEeeecCCCccceeeeec----cceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence 89999999998876665543 8899999987 5566666665444 699999999875 666778899999999976
Q ss_pred Cc--eeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 620 VN--MLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 620 ~~--~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
.. ++...... ....+.+.|+++|+.|++|...|.+.+|++...
T Consensus 474 ~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 474 DDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred cccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 54 33333333 346778889999999999999999999998654
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3e-14 Score=143.14 Aligned_cols=300 Identities=17% Similarity=0.190 Sum_probs=215.3
Q ss_pred eecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC------CCceeEEEecccCceeEEEEEcCCCCEEEEEeCC
Q 001184 536 DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES------EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED 609 (1130)
Q Consensus 536 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 609 (1130)
.+..|.+.|+++.|+.++++|++++. +..+.+|++. +.+++.....|+...|.|++|...+.++++|+.+
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGD----D~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGD----DMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCC----cceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 34567888999999999999999986 8899999974 4567777777776789999999999999999999
Q ss_pred CcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccc
Q 001184 610 NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPG 689 (1130)
Q Consensus 610 g~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1130)
++|..-|+++.+.+..+......+.|+.+..+|..+.+++.+.++.|.+||..........
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~------------------- 187 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL------------------- 187 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce-------------------
Confidence 9999999999999998887776678999999999999999999999999998654211100
Q ss_pred cceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccc
Q 001184 690 SAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASK 769 (1130)
Q Consensus 690 ~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 769 (1130)
+.|. .....
T Consensus 188 ------~~~A-----------------------------------------------------------------N~~~~ 196 (609)
T KOG4227|consen 188 ------VLPA-----------------------------------------------------------------NSGKN 196 (609)
T ss_pred ------eeec-----------------------------------------------------------------CCCcc
Confidence 0000 01223
Q ss_pred eEEEEEeccCCe-EEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEE
Q 001184 770 VARLLYTNSGIG-ILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYV 848 (1130)
Q Consensus 770 i~~l~~s~~g~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l 848 (1130)
...+.|.|.... |++....+-+-+||........ +......- ++ .....-.++.|+|.|..+
T Consensus 197 F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~------------~~~~~~~~----L~-~~~~~~M~~~~~~~G~Q~ 259 (609)
T KOG4227|consen 197 FYTAEFHPETPALILVNSETGGPNVFDRRMQARPV------------YQRSMFKG----LP-QENTEWMGSLWSPSGNQF 259 (609)
T ss_pred ceeeeecCCCceeEEeccccCCCCceeeccccchH------------Hhhhcccc----Cc-ccchhhhheeeCCCCCee
Confidence 344556665544 4445556777777754422110 00000000 00 112223567899999888
Q ss_pred EEEeCC-eEEEEECCCceeEEEEeCCC-------CCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecC-------------
Q 001184 849 MSAGGG-KVSLFNMMNFKVMTTFMSPP-------PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD------------- 907 (1130)
Q Consensus 849 a~~~dg-~i~iwd~~~~~~~~~~~~~~-------~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~------------- 907 (1130)
.+--.| .-.+||+.+.++...-..|. ..+.+++|.- + .-+++|+.+-.|++|.+...
T Consensus 260 msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~-D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~ 337 (609)
T KOG4227|consen 260 MSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFID-D-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDE 337 (609)
T ss_pred hhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeec-c-eeeeccCcccceEEEecCCCccccCccccCcch
Confidence 776644 35677887755533222222 3477888885 4 44899999999999988521
Q ss_pred ----------eEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCC
Q 001184 908 ----------EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDT 948 (1130)
Q Consensus 908 ----------~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~ 948 (1130)
+.+..|+||..-+..+.|+|...+|++.+-.+.+++|.--.
T Consensus 338 ~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 338 EEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred hhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccccc
Confidence 23467899999999999999999999999999999997543
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-14 Score=162.31 Aligned_cols=290 Identities=15% Similarity=0.178 Sum_probs=202.7
Q ss_pred CEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC--CCCEEEE
Q 001184 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP--DGNFIGV 426 (1130)
Q Consensus 349 ~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~las 426 (1130)
....+.|+|-... ++++...-.|+|||.+.++....+. . -......|+.+.+-. |..+|.+
T Consensus 1066 ~pk~~~~hpf~p~-i~~ad~r~~i~vwd~e~~~~l~~F~-----n-----------~~~~~t~Vs~l~liNe~D~aLlLt 1128 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQ-IAAADDRERIRVWDWEKGRLLNGFD-----N-----------GAFPDTRVSDLELINEQDDALLLT 1128 (1387)
T ss_pred CCceeeecCCCce-eEEcCCcceEEEEecccCceecccc-----C-----------CCCCCCccceeeeecccchhheee
Confidence 4677889998874 7777666789999999998865311 1 112345788888876 5568999
Q ss_pred EeCCCeEEEEEecCC--ccce---eeeeeecC----CCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEec-C
Q 001184 427 AFTKHLIHLYTYQGS--NDLC---QSLEIDAH----VGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFE-G 495 (1130)
Q Consensus 427 ~~~d~~i~vwd~~~~--~~~~---~~~~~~~h----~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~-~ 495 (1130)
|+.||.|+||+--.. +..+ ....+.++ .+.=.-+.|-.... .|+++|+-..|+||| ....++..+. +
T Consensus 1129 as~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G--~Ll~tGd~r~IRIWDa~~E~~~~diP~~ 1206 (1387)
T KOG1517|consen 1129 ASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG--HLLVTGDVRSIRIWDAHKEQVVADIPYG 1206 (1387)
T ss_pred eccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC--eEEecCCeeEEEEEecccceeEeecccC
Confidence 999999999975322 1111 11112222 11113356766666 567777789999999 5555555544 4
Q ss_pred CCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcc---eeeecCCCcc--EEEEEEecCCCe-EEEeeecCCCCcEE
Q 001184 496 HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS---RVDYDAPGLW--CTTMLYSADGSR-LFSCGTSKEGDSHL 569 (1130)
Q Consensus 496 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~--v~~~~~s~~~~~-l~~~~~~~~~~~~i 569 (1130)
....|+++.-.. ..|++++.|..||.|++||.+.... +.....|... |..+.+.+.|-. |++++. +|.|
T Consensus 1207 s~t~vTaLS~~~-~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~----~G~I 1281 (1387)
T KOG1517|consen 1207 SSTLVTALSADL-VHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ----DGDI 1281 (1387)
T ss_pred CCccceeecccc-cCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc----CCeE
Confidence 556677776443 3478999999999999999886544 3345556655 999999887665 888876 9999
Q ss_pred EEeeCCCCceeE--EEeccc--CceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEecc-----CCCCCcceEEE
Q 001184 570 VEWNESEGALKR--TYIGFR--KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE-----GGLPSLPRLRF 640 (1130)
Q Consensus 570 ~~wd~~~~~~~~--~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~i~~v~~ 640 (1130)
++||++...... ....|. ++..+++..++....+++|+. +.|+||++... .+..+... ...+.+.|++|
T Consensus 1282 ~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~-~l~~~k~n~~F~~q~~gs~scL~F 1359 (1387)
T KOG1517|consen 1282 QLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE-QLNIIKYNPGFMGQRIGSVSCLAF 1359 (1387)
T ss_pred EEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh-hhcccccCcccccCcCCCcceeee
Confidence 999998743222 222222 335889999999999999998 99999998643 33332221 23346799999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 641 NKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 641 s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+|..-++|+|+.|.+|.||....+
T Consensus 1360 HP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1360 HPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cchhHhhhhccCCceEEEeecCCc
Confidence 999999999999999999987654
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.6e-15 Score=154.02 Aligned_cols=200 Identities=22% Similarity=0.213 Sum_probs=155.6
Q ss_pred EEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeE
Q 001184 878 TFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAI 957 (1130)
Q Consensus 878 ~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~ 957 (1130)
.+++|+. ++..|++|+.||++|||+..+...+.....|.+.|.+|.|||||++|++.+.| ..+||+..++.......
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t- 224 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT- 224 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC-
Confidence 7799999 89999999999999999998888888888999999999999999999999999 89999999974322211
Q ss_pred eccCCCCCCCeEEEEEcCCC---c-EEEE--EcCCcEEEEECCCcee--eeeeecCCCCCCCeEEEEECCCCCEEEEEeC
Q 001184 958 QLPAGKLPVGETRVQFHSDQ---V-RLLV--NHETQLAIYDGSKMEC--IRQWVPQDVLSSPISSAAYSCNSQLIYATFT 1029 (1130)
Q Consensus 958 ~~~~~~~~~~v~~~~~s~d~---~-~l~~--~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~ 1029 (1130)
+ ...+.....+.|+.|+ . ++++ ...+.++.|++..... +..+.........|++++.|+||+++|.|+.
T Consensus 225 --~-~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 225 --P-FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred --C-cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc
Confidence 1 2223556777888877 3 3333 2456677777653221 1111111111458999999999999999999
Q ss_pred CCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 001184 1030 DGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSE 1094 (1130)
Q Consensus 1030 Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~ 1094 (1130)
||.|.|++..+.+...-+. +.|...++.+.|+|+ .+++++.+.|....|..++-
T Consensus 302 dGsVai~~~~~lq~~~~vk----------~aH~~~VT~ltF~Pd-sr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVK----------EAHLGFVTGLTFSPD-SRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCcEEEEEeceeeeeEeeh----------hhheeeeeeEEEcCC-cCcccccccCCceeEEEEee
Confidence 9999999999888765554 568889999999994 77899999999999998876
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.4e-14 Score=161.05 Aligned_cols=256 Identities=13% Similarity=0.098 Sum_probs=181.6
Q ss_pred eecCCCccEEEEEEcCCC-CEEEEEeCCCeEEEEEecCC----ccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCC
Q 001184 404 IVKDSSISVSRVAWSPDG-NFIGVAFTKHLIHLYTYQGS----NDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK 478 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg-~~las~~~d~~i~vwd~~~~----~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~ 478 (1130)
.+..|+..|..++.+++. .++++||.||+|++||...- ...+...++.....++.++.+.+.+. .+|.++.||
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG 1120 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDG 1120 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCC
Confidence 367889999999988755 99999999999999998642 12233334444567899999999999 688889999
Q ss_pred cEEEEecCC---Ce-----eeEecC-CCcCEEEE-eecccCCccEEEEEecCCcEEEEEccCCcceeee--cCCCccEEE
Q 001184 479 LIRVWDLSG---RK-----LFQFEG-HEAPVYSV-CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY--DAPGLWCTT 546 (1130)
Q Consensus 479 ~v~iwd~~~---~~-----~~~~~~-h~~~v~~~-~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~~~v~~ 546 (1130)
.|++.+... +. ...... ..+.+.++ ++........++.+...+.|..||++.......+ ....+.|++
T Consensus 1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTS 1200 (1431)
T ss_pred eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeE
Confidence 999998322 11 111111 22334443 3433333347888999999999999887766543 345567999
Q ss_pred EEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCC---CEEEEEe--CCCcEEEEeCCCCc
Q 001184 547 MLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTR---NRILAAG--EDNQIKFWDMDNVN 621 (1130)
Q Consensus 547 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~--~dg~i~vwd~~~~~ 621 (1130)
++.+|.+.+++.|+. .|.+.+||++-+.++..........+..++.+|-. ...++++ ..+.|.+|++.+|.
T Consensus 1201 i~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1201 IVIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred EEecCCceEEEEecC----CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 999999999999986 89999999999888887765555567766666543 3444444 57889999999997
Q ss_pred eeEEEeccCCCC-----------------CcceEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 001184 622 MLTSTEAEGGLP-----------------SLPRLRFNKEGNLLVVTTADQGIKILANADGL 665 (1130)
Q Consensus 622 ~~~~~~~~~~~~-----------------~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 665 (1130)
+...+....... ....+.+...+..+.+|+.|..|+.||.....
T Consensus 1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 766654431110 11223333345688999999999999987663
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-12 Score=147.16 Aligned_cols=151 Identities=20% Similarity=0.283 Sum_probs=126.1
Q ss_pred EEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCe
Q 001184 353 MDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHL 432 (1130)
Q Consensus 353 v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~ 432 (1130)
+.++++.= .+++|+.-+.|.+|+....+.- ..+.||++.|.++.||-||+++++.|.|.+
T Consensus 139 ~g~s~~~~-~i~~gsv~~~iivW~~~~dn~p-------------------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRs 198 (967)
T KOG0974|consen 139 IGDSAEEL-YIASGSVFGEIIVWKPHEDNKP-------------------IRLKGHEGSIFSIVTSLDGRYIASVSDDRS 198 (967)
T ss_pred EeccCcEE-EEEeccccccEEEEeccccCCc-------------------ceecccCCceEEEEEccCCcEEEEEecCcc
Confidence 34566654 4899999999999998722111 037899999999999999999999999999
Q ss_pred EEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCCCc-CEEEEeecccCCc
Q 001184 433 IHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEA-PVYSVCPHQKENI 511 (1130)
Q Consensus 433 i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~~-~v~~~~~~~~~~~ 511 (1130)
+++|++++++... ...-+|+++|+.+.|.|. .++|++.|.+.++|+..+..+..+.+|.+ .++.++..+ +.
T Consensus 199 iRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n----~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~--~~ 270 (967)
T KOG0974|consen 199 IRLWPIDSREVLG--CTGFGHSARVWACCFLPN----RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPI--GV 270 (967)
T ss_pred eeeeecccccccC--cccccccceeEEEEeccc----eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcC--Cc
Confidence 9999999988665 246789999999999998 48999999999999988888889988875 578887744 44
Q ss_pred cEEEEEecCCcEEEEEccCC
Q 001184 512 HFIFSTAVDGKIKAWLYDNV 531 (1130)
Q Consensus 512 ~~l~s~s~dg~i~vwd~~~~ 531 (1130)
..++|++.|+.+++|++...
T Consensus 271 ~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 271 IIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred eEEEeeccCcchhhhhhhcc
Confidence 78999999999999987653
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-14 Score=140.19 Aligned_cols=250 Identities=15% Similarity=0.255 Sum_probs=179.3
Q ss_pred ccCCCCEEEEEEecCCC----eEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC
Q 001184 344 MHQGSSVVSMDFHPFHH----TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~----~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 419 (1130)
+.|..+++.+.|.|+.+ .+||+.+ ..+|||.+...+...... ..+....-..+.+++++..|+.
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~----------~~L~~~kns~~~aPlTSFDWne 160 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQ----------SVLNNNKNSEFCAPLTSFDWNE 160 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehh----------hhhccCcccccCCccccccccc
Confidence 67999999999999873 3677764 389999997432111000 0011112345678999999997
Q ss_pred -CCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCC----eeeEec
Q 001184 420 -DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGR----KLFQFE 494 (1130)
Q Consensus 420 -dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~----~~~~~~ 494 (1130)
|-++|.+++-|-++.|||+++|........+-.|...|.+|+|...+.. ++++.|.||.||++|+... .+++-.
T Consensus 161 ~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDLR~leHSTIIYE~p 239 (364)
T KOG0290|consen 161 VDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDLRSLEHSTIIYEDP 239 (364)
T ss_pred CCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEecccccceEEecCC
Confidence 7889999999999999999998543333457899999999999998877 8999999999999993222 222222
Q ss_pred CCCcCEEEEeecccCCccEEEEEecC-CcEEEEEccCCcc-eeeecCCCccEEEEEEecC-CCeEEEeeecCCCCcEEEE
Q 001184 495 GHEAPVYSVCPHQKENIHFIFSTAVD-GKIKAWLYDNVGS-RVDYDAPGLWCTTMLYSAD-GSRLFSCGTSKEGDSHLVE 571 (1130)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l~s~s~d-g~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~i~~ 571 (1130)
....+...++|+. .|-+++++-..| ..|.+-|++.... ...+..|...|+.++|.|. ...|.++|. |.++.+
T Consensus 240 ~~~~pLlRLswnk-qDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD----D~qali 314 (364)
T KOG0290|consen 240 SPSTPLLRLSWNK-QDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD----DCQALI 314 (364)
T ss_pred CCCCcceeeccCc-CCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC----cceEEE
Confidence 3356788888875 344677777665 4688999987655 4588899999999999995 456777774 889999
Q ss_pred eeCCCCc------eeEEEecccCceeEEEEEcCCC-CEEEEEeCCCcEEE
Q 001184 572 WNESEGA------LKRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKF 614 (1130)
Q Consensus 572 wd~~~~~------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~v 614 (1130)
||+.+.- ++..+. .++.|..+.|++.. ..++.+. ++++.+
T Consensus 315 WDl~q~~~~~~~dPilay~--a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 315 WDLQQMPRENGEDPILAYT--AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred EecccccccCCCCchhhhh--ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 9986532 222333 23478889999654 4555554 344444
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-14 Score=141.65 Aligned_cols=237 Identities=16% Similarity=0.163 Sum_probs=179.7
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
-..+|+|.||++|+. .+|++.....|.||.......- ...+++..|...|++|.|+|..+.|+
T Consensus 9 ~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w----------------~~~htls~Hd~~vtgvdWap~snrIv 71 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLW----------------EPAHTLSEHDKIVTGVDWAPKSNRIV 71 (361)
T ss_pred ccCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCc----------------eeceehhhhCcceeEEeecCCCCcee
Confidence 357899999999998 5899999999999998766521 12347889999999999999999999
Q ss_pred EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCee-----eEecCCCcCE
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKL-----FQFEGHEAPV 500 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~-----~~~~~h~~~v 500 (1130)
+|+.|..-+||....+..-++...+..|+..++++.|+|.+. .+++||.-+.|.||-.+++.- +.-+.+...|
T Consensus 72 tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv 149 (361)
T KOG1523|consen 72 TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTV 149 (361)
T ss_pred EccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCccccce
Confidence 999999999999966666667777888999999999999999 799999999999988333321 1234577889
Q ss_pred EEEeecccCCccEEEEEecCCcEEEEEc-----cCC-------------cceeeecCCCccEEEEEEecCCCeEEEeeec
Q 001184 501 YSVCPHQKENIHFIFSTAVDGKIKAWLY-----DNV-------------GSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~-----~~~-------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
.+++|++.+ -+|++|+.|+..+++.. +.. +...++....+++..+.|+|+|..|+..+.
T Consensus 150 ~sldWhpnn--VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H- 226 (361)
T KOG1523|consen 150 TSLDWHPNN--VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH- 226 (361)
T ss_pred eeeeccCCc--ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC-
Confidence 999998754 78999999999999953 221 112234456678999999999999999986
Q ss_pred CCCCcEEEEeeCCCCc-eeEEEecccCceeEEEEEcCCCCEEEEEeCC
Q 001184 563 KEGDSHLVEWNESEGA-LKRTYIGFRKKSAGVVQFDTTRNRILAAGED 609 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 609 (1130)
+..+.+-|..... .+....... .+..++.|-.+ +.++.++.|
T Consensus 227 ---ds~v~~~da~~p~~~v~~~~~~~-lP~ls~~~ise-~~vv~ag~~ 269 (361)
T KOG1523|consen 227 ---DSTVSFVDAAGPSERVQSVATAQ-LPLLSVSWISE-NSVVAAGYD 269 (361)
T ss_pred ---CCceEEeecCCCchhccchhhcc-CCceeeEeecC-CceeecCCC
Confidence 8889888876553 233332222 35555555543 345555544
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-11 Score=125.38 Aligned_cols=424 Identities=14% Similarity=0.142 Sum_probs=241.5
Q ss_pred EEEEEEecC--CCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEE
Q 001184 350 VVSMDFHPF--HHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1130)
Q Consensus 350 V~~v~fspd--g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 427 (1130)
....-..|| |.+++++++.| +-.+++.+|+..+ +..|-+.|+.-.|+|||+.+|..
T Consensus 39 M~n~~l~PDI~GD~IiFt~~Dd--lWe~slk~g~~~r--------------------itS~lGVvnn~kf~pdGrkvaf~ 96 (668)
T COG4946 39 MKNYYLNPDIYGDRIIFTCCDD--LWEYSLKDGKPLR--------------------ITSGLGVVNNPKFSPDGRKVAFS 96 (668)
T ss_pred hhhhhcCCcccCcEEEEEechH--HHHhhhccCCeeE--------------------EecccceeccccCCCCCcEEEEE
Confidence 333344555 56678888764 3344555665543 55778889999999999999872
Q ss_pred -------eCCCeEEEEEecCCccceeeeeeecCCCCeeEE-EEecCCCceEEEEEcCCCcEE----EEe--cCCCeeeEe
Q 001184 428 -------FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDL-AFSYPNKQLCIVTCGDDKLIR----VWD--LSGRKLFQF 493 (1130)
Q Consensus 428 -------~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i-~~s~d~~~l~l~s~s~d~~v~----iwd--~~~~~~~~~ 493 (1130)
...+.+.+.+.+.|+..+ . ++-| ...+.+ -|.|||+ ++++...-.-.. +|. .+|.....+
T Consensus 97 rv~~~ss~~taDly~v~~e~Ge~kR-i-TyfG--r~fT~VaG~~~dg~--iiV~TD~~tPF~q~~~lYkv~~dg~~~e~L 170 (668)
T COG4946 97 RVMLGSSLQTADLYVVPSEDGEAKR-I-TYFG--RRFTRVAGWIPDGE--IIVSTDFHTPFSQWTELYKVNVDGIKTEPL 170 (668)
T ss_pred EEEecCCCccccEEEEeCCCCcEEE-E-EEec--cccceeeccCCCCC--EEEEeccCCCcccceeeeEEccCCceeeec
Confidence 233457888888887443 2 2333 334444 5999999 777765433222 222 222222222
Q ss_pred cCCCcCEEEEeecccCCccEEEEEecC-----------C-cEEEEEccCCc-ceeeecCCCccEEEEEEecCCCeEEEee
Q 001184 494 EGHEAPVYSVCPHQKENIHFIFSTAVD-----------G-KIKAWLYDNVG-SRVDYDAPGLWCTTMLYSADGSRLFSCG 560 (1130)
Q Consensus 494 ~~h~~~v~~~~~~~~~~~~~l~s~s~d-----------g-~i~vwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1130)
.-++.+.+.+ .|| .++.|-.- | +=++|--..+. ....+..-...|.+-..-.+.-++++
T Consensus 171 --nlGpathiv~---~dg-~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFls-- 242 (668)
T COG4946 171 --NLGPATHIVI---KDG-IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLS-- 242 (668)
T ss_pred --cCCceeeEEE---eCC-EEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEe--
Confidence 2234444433 222 33333111 0 11334322222 11111111112222222222223333
Q ss_pred ecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEec---c--CCC---
Q 001184 561 TSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA---E--GGL--- 632 (1130)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~--~~~--- 632 (1130)
+.++-|.|+--|+....+ +.....+ ...+-..+.||++++.. ..|.|++||..+.+....--. . ...
T Consensus 243 -D~eG~GnlYSvdldGkDl-rrHTnFt--dYY~R~~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~ 317 (668)
T COG4946 243 -DHEGVGNLYSVDLDGKDL-RRHTNFT--DYYPRNANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKF 317 (668)
T ss_pred -cccCccceEEeccCCchh-hhcCCch--hccccccCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccc
Confidence 456678888888764333 3322222 23444567788887764 458899999887654332111 0 000
Q ss_pred -CCcceEE-EcC-CCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCC
Q 001184 633 -PSLPRLR-FNK-EGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRS 709 (1130)
Q Consensus 633 -~~i~~v~-~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~ 709 (1130)
.+..-+. |++ +|.+++..+.. ...|.+...+..
T Consensus 318 ~~pskyledfa~~~Gd~ia~VSRG-kaFi~~~~~~~~------------------------------------------- 353 (668)
T COG4946 318 VNPSKYLEDFAVVNGDYIALVSRG-KAFIMRPWDGYS------------------------------------------- 353 (668)
T ss_pred cCHHHhhhhhccCCCcEEEEEecC-cEEEECCCCCee-------------------------------------------
Confidence 0011111 333 46666666543 333433222200
Q ss_pred CCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCC
Q 001184 710 SPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNG 789 (1130)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 789 (1130)
+. -++.+.|.-..+.-++..++.+..||
T Consensus 354 ------------------------------------------------iq----v~~~~~VrY~r~~~~~e~~vigt~dg 381 (668)
T COG4946 354 ------------------------------------------------IQ----VGKKGGVRYRRIQVDPEGDVIGTNDG 381 (668)
T ss_pred ------------------------------------------------EE----cCCCCceEEEEEccCCcceEEeccCC
Confidence 00 11333444445555666677888877
Q ss_pred -eEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeC-CeEEEEECCCceeE
Q 001184 790 -VQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGG-GKVSLFNMMNFKVM 867 (1130)
Q Consensus 790 -~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~d-g~i~iwd~~~~~~~ 867 (1130)
.+-+++... ++.... +..-+.|.++..++||++++++.| ..|.+.|+.++...
T Consensus 382 D~l~iyd~~~----------------------~e~kr~---e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~ 436 (668)
T COG4946 382 DKLGIYDKDG----------------------GEVKRI---EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR 436 (668)
T ss_pred ceEEEEecCC----------------------ceEEEe---eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee
Confidence 777776543 222111 135678999999999999999984 78999999999887
Q ss_pred EEEeCCCCCeEEEEEeCCCCcEEEEEeCCC----cEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeC
Q 001184 868 TTFMSPPPASTFLAFHPQDNNIIAIGMEDS----TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGS 937 (1130)
Q Consensus 868 ~~~~~~~~~i~~l~~sp~~~~~lasg~~dg----~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~ 937 (1130)
..-+...+-|+.++|+| +++++|.+--+| .|++||+.+++...... ..+.=.+-+|.||+++|.--+.
T Consensus 437 ~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 437 LIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred EecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEec
Confidence 66666778899999999 999999988776 58999999988655433 2333456789999998886654
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.4e-16 Score=169.69 Aligned_cols=290 Identities=17% Similarity=0.259 Sum_probs=222.5
Q ss_pred CceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcE
Q 001184 577 GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGI 656 (1130)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i 656 (1130)
.+.++.+.+|.. .|.|+.|...|.++++|++|..++||.++++.++....+|.+ .|+.++.+.+..++++++.|..|
T Consensus 180 mk~ikrLlgH~n-aVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~--ditdlavs~~n~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 180 MKNIKRLLGHRN-AVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSG--DITDLAVSSNNTMIAAASNDKVI 256 (1113)
T ss_pred HHHHHHHHhhhh-heeeeeeccccceEeecCccceeeeeeccchhhhccCCCCcc--ccchhccchhhhhhhhcccCceE
Confidence 344556777766 799999999999999999999999999999999999887765 89999999999999999999999
Q ss_pred EEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccc
Q 001184 657 KILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLED 736 (1130)
Q Consensus 657 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1130)
++|.+.++ ..+..+.+|+..+.. .+|+|- .+.+
T Consensus 257 rvWrl~~~-~pvsvLrghtgavta-------------iafsP~---------------------------------~sss 289 (1113)
T KOG0644|consen 257 RVWRLPDG-APVSVLRGHTGAVTA-------------IAFSPR---------------------------------ASSS 289 (1113)
T ss_pred EEEecCCC-chHHHHhccccceee-------------eccCcc---------------------------------ccCC
Confidence 99999998 788888888766553 256665 3566
Q ss_pred cCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccc
Q 001184 737 ISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHW 816 (1130)
Q Consensus 737 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w 816 (1130)
.||++++|+..-.. .....-|........+.++.|...+....+++.++.-..|.+..-. |
T Consensus 290 ~dgt~~~wd~r~~~----~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~---------------~ 350 (1113)
T KOG0644|consen 290 DDGTCRIWDARLEP----RIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA---------------W 350 (1113)
T ss_pred CCCceEeccccccc----cccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhh---------------h
Confidence 78999999987110 0111111112234667788889999999999999888777643311 1
Q ss_pred cCCCCcceeccCCCCCCCceeEEEEecCCC-EEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEe
Q 001184 817 QPSNGLLMTNDVPENAEDVVPCVALSKNDS-YVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGM 894 (1130)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~-~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~ 894 (1130)
+...+.-+..+.|-. +.+++- +-.+.+|++.+|.....+.+|...+..+.++|.+..+..+++
T Consensus 351 ---------------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag 415 (1113)
T KOG0644|consen 351 ---------------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAG 415 (1113)
T ss_pred ---------------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhcc
Confidence 122222222222322 333333 677999999999999999999999999999998888888999
Q ss_pred CCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCc
Q 001184 895 EDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWE 950 (1130)
Q Consensus 895 ~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~ 950 (1130)
.||...|||+-.|..++...-..+.+..-+||+||..++....-|.++|.....++
T Consensus 416 ~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 416 YDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred CCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 99999999999987776644334667788999999999998888999988765544
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.3e-13 Score=145.82 Aligned_cols=334 Identities=15% Similarity=0.166 Sum_probs=206.7
Q ss_pred ceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEE
Q 001184 468 QLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTT 546 (1130)
Q Consensus 468 ~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 546 (1130)
.+++++-..++.|.+.| .+.+.+.++......-..+.+ ++|+++++.++.||.|.++|+.+.+...++.... ...+
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~--s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~ 82 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKF--SPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRG 82 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE---TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEe--cCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-Ccce
Confidence 34667788899999999 888899998865444344555 5677899999999999999999998777776544 4688
Q ss_pred EEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEeccc------CceeEEEEEcCCCCEEEEE-eCCCcEEEEeCCC
Q 001184 547 MLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR------KKSAGVVQFDTTRNRILAA-GEDNQIKFWDMDN 619 (1130)
Q Consensus 547 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~ 619 (1130)
+++++||++++++.. ..+.+.++|.++.+.++.+.... ...+..+..++....++.. -+.+.|.+.|...
T Consensus 83 i~~s~DG~~~~v~n~---~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 83 IAVSPDGKYVYVANY---EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEE--TTTEEEEEEE---ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred EEEcCCCCEEEEEec---CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 999999999998864 27899999999999998876432 2245667778888755554 4558888889877
Q ss_pred CceeEEEeccCCCCCcceEEEcCCCCEEEEE-eCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeecccc
Q 001184 620 VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVT-TADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITP 698 (1130)
Q Consensus 620 ~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 698 (1130)
.+.+........ .......|+|++++++++ ..++.+.++|..++.. ...+..
T Consensus 160 ~~~~~~~~i~~g-~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~-v~~i~~------------------------- 212 (369)
T PF02239_consen 160 PKNLKVTTIKVG-RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL-VALIDT------------------------- 212 (369)
T ss_dssp SSCEEEEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE-EEEEE--------------------------
T ss_pred ccccceeeeccc-ccccccccCcccceeeecccccceeEEEeeccceE-EEEeec-------------------------
Confidence 654433222221 146789999999987665 4567888888766521 110000
Q ss_pred ccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEecc
Q 001184 699 VLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNS 778 (1130)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 778 (1130)
.. ..|..+...+ .+|.
T Consensus 213 ------------------------------------------------g~---------------~p~~~~~~~~-php~ 228 (369)
T PF02239_consen 213 ------------------------------------------------GK---------------KPHPGPGANF-PHPG 228 (369)
T ss_dssp ------------------------------------------------SS---------------SBEETTEEEE-EETT
T ss_pred ------------------------------------------------cc---------------cccccccccc-cCCC
Confidence 00 0011111110 0000
Q ss_pred CCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEE-EEEeCCeEE
Q 001184 779 GIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYV-MSAGGGKVS 857 (1130)
Q Consensus 779 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l-a~~~dg~i~ 857 (1130)
.++++ +.+..+... ...+.+.+.
T Consensus 229 ------------------------------------------------------~g~vw--~~~~~~~~~~~~ig~~~v~ 252 (369)
T PF02239_consen 229 ------------------------------------------------------FGPVW--ATSGLGYFAIPLIGTDPVS 252 (369)
T ss_dssp ------------------------------------------------------TEEEE--EEEBSSSSEEEEEE--TTT
T ss_pred ------------------------------------------------------cceEE--eeccccceecccccCCccc
Confidence 11111 112223333 222345666
Q ss_pred EEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEE----eCCCcEEEEEeecCeEEEEEecCC-CCeeEEEEccCCCeE
Q 001184 858 LFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIG----MEDSTIQIYNVRVDEVKTKLKGHQ-KHITGLAFSTNLNIL 932 (1130)
Q Consensus 858 iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg----~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~dg~~L 932 (1130)
+||..+++.++++...... ..+..+| +++++.+. ...++|.++|.++.+.+.++.... ..+..+.|++||+++
T Consensus 253 v~d~~~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v 330 (369)
T PF02239_consen 253 VHDDYAWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEV 330 (369)
T ss_dssp -STTTBTSEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEE
T ss_pred cchhhcCeEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEE
Confidence 8999999999999987666 8888999 78888877 455899999999998888875333 358999999999976
Q ss_pred EEEeCC--CcEEEEECCCCcccceee
Q 001184 933 VSSGSD--AQLIFWNTDTWEKRKSIA 956 (1130)
Q Consensus 933 ~s~s~D--g~i~vwd~~~~~~~~~~~ 956 (1130)
..+..+ +.|.+||..+.+......
T Consensus 331 ~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 331 WVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred EEEEecCCCEEEEEECCCcEEEEEEE
Confidence 655544 369999999977655544
|
... |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.4e-13 Score=144.95 Aligned_cols=321 Identities=11% Similarity=0.096 Sum_probs=200.9
Q ss_pred cEE-EEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCce
Q 001184 512 HFI-FSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKS 590 (1130)
Q Consensus 512 ~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~ 590 (1130)
+++ ++-..++.|.+.|..+.+....+......-..+.|+|||+++++++. ++.|.++|+.+++.++++... ..
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r----dg~vsviD~~~~~~v~~i~~G--~~ 79 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR----DGTVSVIDLATGKVVATIKVG--GN 79 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET----TSEEEEEETTSSSEEEEEE-S--SE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC----CCeEEEEECCcccEEEEEecC--CC
Confidence 344 55667899999999998888888766555556789999999999875 789999999999999998753 35
Q ss_pred eEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeEEEeccCC-----CCCcceEEEcCCCCEEEEEeC-CCcEEEEEcCC
Q 001184 591 AGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNMLTSTEAEGG-----LPSLPRLRFNKEGNLLVVTTA-DQGIKILANAD 663 (1130)
Q Consensus 591 v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~-----~~~i~~v~~s~~~~~l~~~~~-dg~i~iw~~~~ 663 (1130)
...+++++||++++++. .++.+.++|..+.+.++.+...+. ...+..+..+|....+++.-. .+.|.+.|..+
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 67799999999998875 689999999999999988765432 224566777777765544433 46665555433
Q ss_pred CchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccc
Q 001184 664 GLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKP 743 (1130)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 743 (1130)
....
T Consensus 160 ~~~~---------------------------------------------------------------------------- 163 (369)
T PF02239_consen 160 PKNL---------------------------------------------------------------------------- 163 (369)
T ss_dssp SSCE----------------------------------------------------------------------------
T ss_pred cccc----------------------------------------------------------------------------
Confidence 2000
Q ss_pred eeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcc
Q 001184 744 WELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLL 823 (1130)
Q Consensus 744 w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 823 (1130)
.+ +..
T Consensus 164 ---------------------------------------~~-------~~i----------------------------- 168 (369)
T PF02239_consen 164 ---------------------------------------KV-------TTI----------------------------- 168 (369)
T ss_dssp ---------------------------------------EE-------EEE-----------------------------
T ss_pred ---------------------------------------ce-------eee-----------------------------
Confidence 00 000
Q ss_pred eeccCCCCCCCceeEEEEecCCCEEEEEe--CCeEEEEECCCceeEEEEeC----CCCCeEEEEEeCC---------CCc
Q 001184 824 MTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMS----PPPASTFLAFHPQ---------DNN 888 (1130)
Q Consensus 824 ~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~sp~---------~~~ 888 (1130)
..........|+|++++++++. ++.|-++|..+++.+..+.. |..+...+ .+|. .+.
T Consensus 169 -------~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~ 240 (369)
T PF02239_consen 169 -------KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGY 240 (369)
T ss_dssp -------E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSS
T ss_pred -------cccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccc
Confidence 0122334567788888877765 57788888888877766542 22223222 2221 122
Q ss_pred EEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEE----eCCCcEEEEECCCCcccceeeEeccCCCC
Q 001184 889 IIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSS----GSDAQLIFWNTDTWEKRKSIAIQLPAGKL 964 (1130)
Q Consensus 889 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~----s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 964 (1130)
..++.-....+.+|+..+.+.++++....++ ..+..+||+++|.+. ...++|.++|.++.+..... ... .
T Consensus 241 ~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i----~~~-~ 314 (369)
T PF02239_consen 241 FAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTI----TPG-P 314 (369)
T ss_dssp SEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-H----HHH-H
T ss_pred eecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEE----ecc-C
Confidence 2222222335667888899999999987666 788999999999988 44588999999985432211 111 0
Q ss_pred CCCeEEEEEcCCCcEEEEE---cCCcEEEEECCCceeeeeee
Q 001184 965 PVGETRVQFHSDQVRLLVN---HETQLAIYDGSKMECIRQWV 1003 (1130)
Q Consensus 965 ~~~v~~~~~s~d~~~l~~~---~d~~i~v~d~~~~~~~~~~~ 1003 (1130)
...+..+.|++||+.+.++ .++.|.+||..+.+.+..+.
T Consensus 315 ~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 315 GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp T--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 0238899999999988874 34489999999999988875
|
... |
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-12 Score=128.03 Aligned_cols=239 Identities=13% Similarity=0.173 Sum_probs=170.1
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCC------CcEEEEe
Q 001184 411 SVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD------KLIRVWD 484 (1130)
Q Consensus 411 ~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d------~~v~iwd 484 (1130)
...+++|+.|...+++|..+| .+||+++--+... ...-+.+.+.-+...--.+. +.+.||.+ +.|.|||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLfR~N~-laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLFRSNY-LALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhhhhce-EEEecCCCCCCCCCceEEEEe
Confidence 345699999999999998888 8999987532211 11112222221121122333 33334433 5799999
Q ss_pred -cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEcc-CCcceeeecCCC--ccEEEEEEecCCCeEEEee
Q 001184 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYD-NVGSRVDYDAPG--LWCTTMLYSADGSRLFSCG 560 (1130)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~ 560 (1130)
...+++.++. ...+|.++.+... .|+. -.+++|.+|... +.+....+.... ....+++-..+...||.-|
T Consensus 82 D~k~~~i~el~-f~~~I~~V~l~r~----riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg 155 (346)
T KOG2111|consen 82 DLKERCIIELS-FNSEIKAVKLRRD----RIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPG 155 (346)
T ss_pred cccCcEEEEEE-eccceeeEEEcCC----eEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCC
Confidence 8899998887 6789999988542 3333 357899999887 444444444322 2344444444444555443
Q ss_pred ecCCCCcEEEEeeCCCCce--eEEEecccCceeEEEEEcCCCCEEEEEeCCCc-EEEEeCCCCceeEEEeccCCCCCcce
Q 001184 561 TSKEGDSHLVEWNESEGAL--KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQ-IKFWDMDNVNMLTSTEAEGGLPSLPR 637 (1130)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~i~~ 637 (1130)
...|+|++-|+...+. ...+..|.. .|.|++.+-+|..+|+++..|+ |||||..+|+.+..+........|++
T Consensus 156 ---~k~GqvQi~dL~~~~~~~p~~I~AH~s-~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~ 231 (346)
T KOG2111|consen 156 ---FKTGQVQIVDLASTKPNAPSIINAHDS-DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYC 231 (346)
T ss_pred ---CccceEEEEEhhhcCcCCceEEEcccC-ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEE
Confidence 3479999999876555 356666554 8999999999999999999997 79999999999999987766678999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 638 LRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 638 v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
++|||++.+||++++.|++.|+.+...
T Consensus 232 iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 232 IAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 999999999999999999999998764
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.3e-14 Score=161.07 Aligned_cols=177 Identities=14% Similarity=0.176 Sum_probs=135.3
Q ss_pred EecCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCc-------ceeeecCCCccEEEEEEecCCCe
Q 001184 483 WDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG-------SRVDYDAPGLWCTTMLYSADGSR 555 (1130)
Q Consensus 483 wd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~ 555 (1130)
|+.+|..+..+..|...|..++.++ +++.+++|||.||+|++|+.+... ...++...+..+.++.+.+.++.
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~-~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSS-EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCccceEeehhhhccccccceeecC-CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 8899999999999999999888764 555899999999999999986532 22345556778999999999999
Q ss_pred EEEeeecCCCCcEEEEeeCCCC--c-----eeEEEecccCce-eEEEEEcCC-CC-EEEEEeCCCcEEEEeCCCCceeEE
Q 001184 556 LFSCGTSKEGDSHLVEWNESEG--A-----LKRTYIGFRKKS-AGVVQFDTT-RN-RILAAGEDNQIKFWDMDNVNMLTS 625 (1130)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~--~-----~~~~~~~~~~~~-v~~~~~~~~-~~-~l~~~~~dg~i~vwd~~~~~~~~~ 625 (1130)
+|+++. ||.|.+.++.-. . ..+....+..+. +..-++... +. .++.+...+.|..||.........
T Consensus 1113 ~Av~t~----DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1113 FAVSTK----DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred EEEEcC----CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence 999975 999999887642 1 112222222222 333333322 23 677788889999999998877777
Q ss_pred EeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 626 TEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 626 ~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
++..-..+.|++++.+|.+.+++.|+..|.+.+||++=+
T Consensus 1189 lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecC
Confidence 666655568999999999999999999999999998644
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-14 Score=148.81 Aligned_cols=199 Identities=13% Similarity=0.196 Sum_probs=159.7
Q ss_pred eEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEec
Q 001184 837 PCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKG 915 (1130)
Q Consensus 837 ~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 915 (1130)
.+++|+++|..+++++ ||++|||+..+...+.....|...|.++.|+| |+++|++-+.| ..+||+++++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999998 99999999888888888888999999999999 99999999999 899999999977766552
Q ss_pred --CCCCeeEEEEccCC-----CeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-cCCc
Q 001184 916 --HQKHITGLAFSTNL-----NILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQ 987 (1130)
Q Consensus 916 --h~~~V~~l~~s~dg-----~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~ 987 (1130)
.......+.|+.|+ ..+++...-+.|+.|++..+............. ....+++++.|+||++++.+ .||.
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~-~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIK-RFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhh-ccCcceeEEEcCCCcEEEEeccCCc
Confidence 23346677888877 333344455678888887755431111111111 11589999999999999995 6999
Q ss_pred EEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 001184 988 LAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS 1040 (1130)
Q Consensus 988 i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~ 1040 (1130)
|.|++..+.+++..... .|..-|+.+.|+||.+++++.+.|..+.|..+.-
T Consensus 305 Vai~~~~~lq~~~~vk~--aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQYVKE--AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEEeceeeeeEeehh--hheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999999888876654 4588999999999999999999999999887653
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.5e-14 Score=147.51 Aligned_cols=295 Identities=13% Similarity=0.118 Sum_probs=218.0
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
.+.+|.+.|..|.|...|..|++|+.|..|.+||...++.... -..||...|....|-|.....-+++++.||.|++=
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~--f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS--FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc--cccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 3779999999999999999999999999999999998775432 23689999998899886544479999999999998
Q ss_pred e--cCCCee--eEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeec---CCCc---cEEEEEEecCC
Q 001184 484 D--LSGRKL--FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD---APGL---WCTTMLYSADG 553 (1130)
Q Consensus 484 d--~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~---~v~~~~~s~~~ 553 (1130)
. .++.+. ..+..|.++|.-++..|.. ...|++++.|+.+.-.|++.......+. .+.. ....++..|..
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~s-p~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDS-PKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeccccceecceecccccCccceeeecCCC-CCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 7 455443 4566799999999987643 3678999999999999998765543322 1222 56788899977
Q ss_pred C-eEEEeeecCCCCcEEEEeeCCCCce------eEEEecc-----cCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCC--
Q 001184 554 S-RLFSCGTSKEGDSHLVEWNESEGAL------KRTYIGF-----RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN-- 619 (1130)
Q Consensus 554 ~-~l~~~~~~~~~~~~i~~wd~~~~~~------~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-- 619 (1130)
. .+++++. +..+++||.+.-.. +..+-.+ ....|++++++.++.-+++.-.|-.|+++.-.-
T Consensus 294 t~~faVgG~----dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~ 369 (559)
T KOG1334|consen 294 TNEFAVGGS----DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGD 369 (559)
T ss_pred ccccccCCh----hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccccc
Confidence 6 6677765 77889998754221 2222222 223588999998888888888888999995432
Q ss_pred C----------ceeEE-EeccCCCCCcceEEE-cCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccc
Q 001184 620 V----------NMLTS-TEAEGGLPSLPRLRF-NKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKV 687 (1130)
Q Consensus 620 ~----------~~~~~-~~~~~~~~~i~~v~~-s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1130)
| ..+.. +++|.....|..+.| -|...++++|++-|.|.||+-.++ +.++.+.+....+.
T Consensus 370 G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~-eii~~MegDr~VVN-------- 440 (559)
T KOG1334|consen 370 GSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG-EIIRFMEGDRHVVN-------- 440 (559)
T ss_pred CCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh-HHHHHhhcccceEe--------
Confidence 2 12222 667766667888865 678899999999999999998887 77777777655333
Q ss_pred cccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeecc
Q 001184 688 PGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTE 748 (1130)
Q Consensus 688 ~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~ 748 (1130)
++.|. +.--.+++.+.|..|+||...+
T Consensus 441 -------CLEpH---------------------------P~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 441 -------CLEPH---------------------------PHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred -------ccCCC---------------------------CCCchhhccCCccceeeecCCc
Confidence 33333 1223467888999999998743
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.2e-13 Score=143.04 Aligned_cols=287 Identities=13% Similarity=0.133 Sum_probs=208.9
Q ss_pred ceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEc
Q 001184 339 AVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1130)
Q Consensus 339 ~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 418 (1130)
+++..++|...-+.+..||||+|++|+|..--.|++||+..-.+...+. -....|.-.-+|
T Consensus 43 eLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERh-------------------lDae~V~feiLs 103 (703)
T KOG2321|consen 43 ELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERH-------------------LDAEVVDFEILS 103 (703)
T ss_pred HHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeec-------------------ccccceeEEEec
Confidence 3555678999999999999999999999999999999998765443211 113356666677
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCC
Q 001184 419 PDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHE 497 (1130)
Q Consensus 419 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~ 497 (1130)
.|-..++.-..|.+|-+-.-- |... ...+. ..-.+++++.-.-. |+.++....|+=.+ ..|+.+..|....
T Consensus 104 DD~SK~v~L~~DR~IefHak~-G~hy--~~RIP---~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~ 175 (703)
T KOG2321|consen 104 DDYSKSVFLQNDRTIEFHAKY-GRHY--RTRIP---KFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDS 175 (703)
T ss_pred cchhhheEeecCceeeehhhc-Ceee--eeecC---cCCccccccCCCcc--EEEeecCcceEEEEcccccccccccccc
Confidence 777777777788887665432 2211 11111 12344555544433 33333444577777 8899999999888
Q ss_pred cCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCC------C-----ccEEEEEEecCCCeEEEeeecCCCC
Q 001184 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP------G-----LWCTTMLYSADGSRLFSCGTSKEGD 566 (1130)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------~-----~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1130)
+.++++.+++.. .+|++|+.+|.|..||.+.......+... . ..|+++.|+.+|-.+++|.. .
T Consensus 176 ~~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----~ 249 (703)
T KOG2321|consen 176 GELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----T 249 (703)
T ss_pred ccceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----C
Confidence 999999886544 68999999999999999876655543322 1 14999999999999999986 8
Q ss_pred cEEEEeeCCCCceeEEEecccCceeEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCC
Q 001184 567 SHLVEWNESEGALKRTYIGFRKKSAGVVQFDTT--RNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEG 644 (1130)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~ 644 (1130)
|.+.+||+++.+++..-......++..+.|.+. ++.+++. +...++|||-.+|+....+.... .++.+++-|++
T Consensus 250 G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~---~lND~C~~p~s 325 (703)
T KOG2321|consen 250 GSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTS---DLNDFCFVPGS 325 (703)
T ss_pred CcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccC---CcCceeeecCC
Confidence 999999999988876655444456777888665 3445544 45789999999999988886544 58999999999
Q ss_pred CEEEEEeCCCcEEEEEcC
Q 001184 645 NLLVVTTADQGIKILANA 662 (1130)
Q Consensus 645 ~~l~~~~~dg~i~iw~~~ 662 (1130)
.+++++-.+..+..|-+.
T Consensus 326 Gm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 326 GMFFTANESSKMHTYYIP 343 (703)
T ss_pred ceEEEecCCCcceeEEcc
Confidence 999999988887776554
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-13 Score=156.78 Aligned_cols=219 Identities=15% Similarity=0.160 Sum_probs=145.1
Q ss_pred eccCCCCEEEEEEecCCCeEEEEEeC--cCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC
Q 001184 343 TMHQGSSVVSMDFHPFHHTLLVVGCG--DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1130)
Q Consensus 343 ~~~h~~~V~~v~fspdg~~llasg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 420 (1130)
...|...|.+.+|||||++++.+... +..|++||+.+++..... .+.+| ..+++||||
T Consensus 199 lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~-----------------~~~g~---~~~~~wSPD 258 (429)
T PRK01742 199 VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA-----------------SFRGH---NGAPAFSPD 258 (429)
T ss_pred eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-----------------cCCCc---cCceeECCC
Confidence 34578899999999999974443322 247999999887643210 12233 346899999
Q ss_pred CCEEEEEe-CCCeEEEE--EecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCeeeEecC
Q 001184 421 GNFIGVAF-TKHLIHLY--TYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEG 495 (1130)
Q Consensus 421 g~~las~~-~d~~i~vw--d~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~~~~~~ 495 (1130)
|+.|++++ .+|.+.|| |+.++.. . .+..+...+.+.+|+|||+. +++++..++..+||+ ..+.....+ .
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~-~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~~~~~~~~~~l-~ 332 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTP-S---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRMSASGGGASLV-G 332 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCe-E---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEEECCCCCeEEe-c
Confidence 99998875 57766665 5555542 2 35567777899999999995 344555678888888 444444333 3
Q ss_pred CCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeC-
Q 001184 496 HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE- 574 (1130)
Q Consensus 496 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~- 574 (1130)
+.. ....| +++++.|+..+.++ +.+||+.++........ ....++.|+|||++|+.++. ++...+|.+
T Consensus 333 ~~~--~~~~~--SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~----~g~~~~l~~~ 401 (429)
T PRK01742 333 GRG--YSAQI--SADGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSST----QGLGKVLQLV 401 (429)
T ss_pred CCC--CCccC--CCCCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEc----CCCceEEEEE
Confidence 433 34555 45667888777765 55599887665432222 12356789999999999875 444455543
Q ss_pred -CCCceeEEEecccCceeEEEEEcCC
Q 001184 575 -SEGALKRTYIGFRKKSAGVVQFDTT 599 (1130)
Q Consensus 575 -~~~~~~~~~~~~~~~~v~~~~~~~~ 599 (1130)
.+|..++.+..+.. .+...+|+|-
T Consensus 402 ~~~G~~~~~l~~~~g-~~~~p~wsp~ 426 (429)
T PRK01742 402 SADGRFKARLPGSDG-QVKFPAWSPY 426 (429)
T ss_pred ECCCCceEEccCCCC-CCCCcccCCC
Confidence 45777788876554 6777888874
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.3e-12 Score=134.91 Aligned_cols=573 Identities=11% Similarity=0.125 Sum_probs=335.7
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
......|++|..... ++|+|+.||.++|-.+.+...-... +- +...+...-..++.||.+.|.-+.|+.+.+.|-
T Consensus 13 nnvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~--~g--laa~snLsmNQtLeGH~~sV~vvTWNe~~QKLT 87 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNK--SG--LAAASNLSMNQTLEGHNASVMVVTWNENNQKLT 87 (1189)
T ss_pred CCceEEEEEEcccCC-eEEeccccceeEEEEccccCCcccc--cc--cccccccchhhhhccCcceEEEEEecccccccc
Confidence 445788999999887 5999999999999998765432110 00 011111112236899999999999999999999
Q ss_pred EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCCCcCEEEEee
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCP 505 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~~~v~~~~~ 505 (1130)
+...+|.|.||-+-.|.-.... .-......|.+++|..||. .++..-.||.|.+=..+|..+.--.-.......+.|
T Consensus 88 tSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~w 164 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLW 164 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchheccceee
Confidence 9999999999999877543321 1234566799999999999 678888888886655555554321111122234556
Q ss_pred cccCCccEEEEEecCCcEEEEEccCCc-------cee----eecCCCccEEEEEEe--------cCCCeEEEeeecCCCC
Q 001184 506 HQKENIHFIFSTAVDGKIKAWLYDNVG-------SRV----DYDAPGLWCTTMLYS--------ADGSRLFSCGTSKEGD 566 (1130)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~vwd~~~~~-------~~~----~~~~~~~~v~~~~~s--------~~~~~l~~~~~~~~~~ 566 (1130)
+ +|...++.+-.+|.+.++|....- +.. .+......+-.+.|. ||...++++-. +
T Consensus 165 s--~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~----n 238 (1189)
T KOG2041|consen 165 S--EDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA----N 238 (1189)
T ss_pred c--ccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc----C
Confidence 4 455677777778999999865321 111 111112234444442 57778888875 7
Q ss_pred cEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCC---------CcEEEEeCCCCceeEEEeccCCCCCcce
Q 001184 567 SHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED---------NQIKFWDMDNVNMLTSTEAEGGLPSLPR 637 (1130)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~i~~ 637 (1130)
|.+.+..-.+......+.. +-.+....|+++|..++.+|.+ +.|.+|.. -|..+.+++.++. .|++
T Consensus 239 Gr~QiMR~eND~~Pvv~dt--gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~--~It~ 313 (1189)
T KOG2041|consen 239 GRMQIMRSENDPEPVVVDT--GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGS--CITG 313 (1189)
T ss_pred ceehhhhhcCCCCCeEEec--ccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCc--eeee
Confidence 7777765444333223321 2356678899999999998754 35666653 5778888887765 7999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCccc
Q 001184 638 LRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTI 717 (1130)
Q Consensus 638 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~ 717 (1130)
++|-..|-.+|.+ .|+.|.+=++.... .+-.+.. .+ +...+.. .
T Consensus 314 lsWEg~gLriA~A-vdsfiyfanIRP~y-kWgy~e~---Tv--------------Vy~y~~~---------e-------- 357 (1189)
T KOG2041|consen 314 LSWEGTGLRIAIA-VDSFIYFANIRPEY-KWGYIEE---TV--------------VYVYQKE---------E-------- 357 (1189)
T ss_pred eEEcCCceEEEEE-ecceEEEEeecccc-eEEEeee---EE--------------EEEEccC---------C--------
Confidence 9998888777766 46777776654431 1000000 00 0000000 0
Q ss_pred ccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecC
Q 001184 718 LNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWN 797 (1130)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~ 797 (1130)
.-...|.+|+..+.....+ .-....++++..+--.++.-..++.+.-++.-
T Consensus 358 ------------------~p~y~i~Fwdtk~nek~vK-----------~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~l 408 (1189)
T KOG2041|consen 358 ------------------LPQYGIMFWDTKTNEKTVK-----------TVTHFENMAFYREHCVLINRQDDGVIPEYSTL 408 (1189)
T ss_pred ------------------CcceEEEEEecccChhhhh-----------hhcceeehheecccEEEEeccccCCCcchhhh
Confidence 0003355666544221111 11122344555444444444445555433110
Q ss_pred CCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEeC---CC
Q 001184 798 RTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMS---PP 874 (1130)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~---~~ 874 (1130)
.. .. ......+-+.- |..+. ..-..|.-.-..-++.+++.++...+.+|.....+....+.+ +.
T Consensus 409 e~-----~~--~~~~l~LCNSI-GT~lD-----~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rk 475 (1189)
T KOG2041|consen 409 EN-----RS--RVYFLQLCNSI-GTSLD-----YKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRK 475 (1189)
T ss_pred hc-----cc--ceEEEeeeccc-CCcCC-----CCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcc
Confidence 00 00 00000111100 00000 011122222223367788888888999998765544433332 11
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccce
Q 001184 875 PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS 954 (1130)
Q Consensus 875 ~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~ 954 (1130)
..- |+-| ..-+|..|+++.- . ..++.|..++|.+++.+ .++|..+-..|.|.-+.+........
T Consensus 476 egr----~h~D---dtp~ga~d~~l~y---s----~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~ 539 (1189)
T KOG2041|consen 476 EGR----FHGD---DTPEGAQDRTLEY---S----TKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNS 539 (1189)
T ss_pred ccc----ccCC---CCccchhhceeec---c----ceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeec
Confidence 111 3221 1224555654421 1 35677889999999997 56899999999999999988443222
Q ss_pred eeEeccCCCCCCCeEEEEEcCCCcEEEE-EcCCcEEEEECC---CceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCC
Q 001184 955 IAIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGS---KMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD 1030 (1130)
Q Consensus 955 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~---~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D 1030 (1130)
. .....+.++...-+...+++ ..-+.+.+.|+. +|..+..+.... ...|+.+.|..|...|++--+.
T Consensus 540 y-------~~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~e--rrDVWd~~Wa~dNp~llAlmeK 610 (1189)
T KOG2041|consen 540 Y-------PVNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSE--RRDVWDYEWAQDNPNLLALMEK 610 (1189)
T ss_pred c-------ccCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhh--hhhhhhhhhccCCchHHhhhhh
Confidence 1 12256778888888887776 456777777776 455544333222 5689999999998877777666
Q ss_pred CcEEEEeCCC
Q 001184 1031 GSIGVFDADS 1040 (1130)
Q Consensus 1031 g~i~vwd~~~ 1040 (1130)
-.++|++-..
T Consensus 611 trmyifrgnd 620 (1189)
T KOG2041|consen 611 TRMYIFRGND 620 (1189)
T ss_pred ceEEEecCcC
Confidence 6788886543
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-12 Score=147.73 Aligned_cols=238 Identities=13% Similarity=0.124 Sum_probs=156.6
Q ss_pred CeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeC---CCeEEEEEecCCcccee
Q 001184 370 GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFT---KHLIHLYTYQGSNDLCQ 446 (1130)
Q Consensus 370 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~---d~~i~vwd~~~~~~~~~ 446 (1130)
..|.+||...+.... +..+...+.+.+|||||+.||..+. +..|.+||+.+|+.. .
T Consensus 179 ~~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~ 237 (429)
T PRK03629 179 YELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-Q 237 (429)
T ss_pred eeEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-E
Confidence 368899887654332 3456678999999999999987643 357999999887632 2
Q ss_pred eeeeecCCCCeeEEEEecCCCceEEEEEcCCC--cEEEEecCCCeeeEecCCCcCEEEEeecccCCccEEEEEec-CCcE
Q 001184 447 SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK--LIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV-DGKI 523 (1130)
Q Consensus 447 ~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~--~v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i 523 (1130)
+....+.+..++|+|||+. ++++.+.++ .|++||..+..+..+..+...+....|+| +++.|+..+. ++..
T Consensus 238 ---l~~~~~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSP--DG~~I~f~s~~~g~~ 311 (429)
T PRK03629 238 ---VASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP--DSQNLAYTSDQAGRP 311 (429)
T ss_pred ---ccCCCCCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECC--CCCEEEEEeCCCCCc
Confidence 2223334567899999995 333444444 58889954444555555556677788865 5566766654 4555
Q ss_pred EEE--EccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCC
Q 001184 524 KAW--LYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN 601 (1130)
Q Consensus 524 ~vw--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 601 (1130)
.+| |+..+.. ..+...........|+|||++++..+. .++...|++||+.+++... +.... ......|+|||+
T Consensus 312 ~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~-~~g~~~I~~~dl~~g~~~~-Lt~~~--~~~~p~~SpDG~ 386 (429)
T PRK03629 312 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSS-NGGQQHIAKQDLATGGVQV-LTDTF--LDETPSIAPNGT 386 (429)
T ss_pred eEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEc-cCCCceEEEEECCCCCeEE-eCCCC--CCCCceECCCCC
Confidence 555 5544433 333334445667899999999988764 2335679999998886543 33211 233577999999
Q ss_pred EEEEEeCCCc---EEEEeCCCCceeEEEeccCCCCCcceEEEcC
Q 001184 602 RILAAGEDNQ---IKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1130)
Q Consensus 602 ~l~~~~~dg~---i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~ 642 (1130)
+|+.++.++. +++++++ |.....+..+.+ .+...+|+|
T Consensus 387 ~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~--~~~~p~Wsp 427 (429)
T PRK03629 387 MVIYSSSQGMGSVLNLVSTD-GRFKARLPATDG--QVKFPAWSP 427 (429)
T ss_pred EEEEEEcCCCceEEEEEECC-CCCeEECccCCC--CcCCcccCC
Confidence 9999887764 7777874 444455544333 577888887
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-14 Score=160.28 Aligned_cols=338 Identities=18% Similarity=0.186 Sum_probs=221.7
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCcccccccccCCCCC-CCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCccccCc
Q 001184 170 RLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCSPPN-GARAPTPVTLPVAAVAKPATYAPLGAHAVPFPPAVAAANA 248 (1130)
Q Consensus 170 rL~~ll~qa~~~q~~~~~~~~~~~~~~sl~~~h~c~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 248 (1130)
-|..|+.|+++.|+.+|+.+.++.+.+|||..|+|+++. ..+.|...+..++.-. +|+
T Consensus 1014 sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk~~~~ap~N~t~Rl~~re-------------l~~-------- 1072 (1516)
T KOG1832|consen 1014 SLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPKRLLEAPLNMTGRLGTRE-------------LQS-------- 1072 (1516)
T ss_pred cHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChHHHhhcchhhhhcccchh-------------hcC--------
Confidence 499999999999999999999999999999999999863 2334444433221100 000
Q ss_pred hhhhhccccCCCCCcccccccccCCCCCCCCccccccCCCCCCCCCccccCCCCChHHHHHhhcccCCcccccccCCCCC
Q 001184 249 NALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDYPSSDHEQLKKRLRASQSVDEATYPVPSQQ 328 (1130)
Q Consensus 249 ~~~~~w~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 328 (1130)
. .+.+.....+..-+..++|.+.
T Consensus 1073 ---------------~-----------------------------y~gV~g~~~dr~~IFSRFr~w~------------- 1095 (1516)
T KOG1832|consen 1073 ---------------F-----------------------------YSGVHGNRRDRQFIFSRFRSWR------------- 1095 (1516)
T ss_pred ---------------c-----------------------------ccccccCcccchhhHhhcccch-------------
Confidence 0 0122223344444555665542
Q ss_pred cccccCCcccceeeec-cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecC
Q 001184 329 ATWSLDDLPRAVACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKD 407 (1130)
Q Consensus 329 ~~~~~~~~~~~~~~~~-~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (1130)
.+ .|...-+|++||-+.+ .|+.|+..|.|+++++.+|.... ....
T Consensus 1096 --------------~frd~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~-------------------s~nc 1141 (1516)
T KOG1832|consen 1096 --------------SFRDETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEE-------------------SVNC 1141 (1516)
T ss_pred --------------hhhccccceeeEEeecCCc-eEEeeeccceEEEEEccCccccc-------------------cccc
Confidence 23 3778999999999988 59999999999999999998765 3668
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCC--eEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-
Q 001184 408 SSISVSRVAWSPDGNFIGVAFTKH--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD- 484 (1130)
Q Consensus 408 h~~~V~~v~~spdg~~las~~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd- 484 (1130)
|.++|+-+.-|.||..+.+.+.-. ...+|++.+- ....+++. .-.++.|+..... -+.|..-..+.+||
T Consensus 1142 H~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~--r~~gt~~d~a~~YDv 1213 (1516)
T KOG1832|consen 1142 HQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST--GGPRHSFD----EDKAVKFSNSLQF--RALGTEADDALLYDV 1213 (1516)
T ss_pred cccccccccccCCcceeeeeccccCchHHHhccccc--cCcccccc----ccceeehhhhHHH--HHhcccccceEEEec
Confidence 999999999999999777664432 4679998762 22223333 2467888877553 23333345688999
Q ss_pred cCCCeeeEe-cC---CCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEee
Q 001184 485 LSGRKLFQF-EG---HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCG 560 (1130)
Q Consensus 485 ~~~~~~~~~-~~---h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1130)
.++..+.++ .+ ....-++..|+|.. .+++- || .+||++..+.+..+..-.. .-.-.|.|.|..++..+
T Consensus 1214 qT~~~l~tylt~~~~~~y~~n~a~FsP~D--~LIln---dG--vLWDvR~~~aIh~FD~ft~-~~~G~FHP~g~eVIINS 1285 (1516)
T KOG1832|consen 1214 QTCSPLQTYLTDTVTSSYSNNLAHFSPCD--TLILN---DG--VLWDVRIPEAIHRFDQFTD-YGGGGFHPSGNEVIINS 1285 (1516)
T ss_pred ccCcHHHHhcCcchhhhhhccccccCCCc--ceEee---Cc--eeeeeccHHHHhhhhhhee-cccccccCCCceEEeec
Confidence 888777663 22 12222455565543 44443 34 4699998877766554332 12345899999998865
Q ss_pred ecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEe--CC---------------CcEEEEeCCCCcee
Q 001184 561 TSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG--ED---------------NQIKFWDMDNVNML 623 (1130)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d---------------g~i~vwd~~~~~~~ 623 (1130)
.|||+++.++++....-. -..+.|+..|+.++..- .| ...+-++......+
T Consensus 1286 ---------EIwD~RTF~lLh~VP~Ld---qc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~i 1353 (1516)
T KOG1832|consen 1286 ---------EIWDMRTFKLLHSVPSLD---QCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDI 1353 (1516)
T ss_pred ---------hhhhhHHHHHHhcCcccc---ceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccc
Confidence 489999999888776542 34577888887666542 00 12445555555666
Q ss_pred EEEeccCCCCCcceEEEcCCCCEEEEE
Q 001184 624 TSTEAEGGLPSLPRLRFNKEGNLLVVT 650 (1130)
Q Consensus 624 ~~~~~~~~~~~i~~v~~s~~~~~l~~~ 650 (1130)
.++.... .+..++-+|...++++-
T Consensus 1354 aTi~v~R---~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1354 ATIPVDR---CLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred eeeeccc---chhhhhcCCccceEEEE
Confidence 6665443 45666666655555544
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.7e-12 Score=128.65 Aligned_cols=285 Identities=16% Similarity=0.194 Sum_probs=185.6
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC-CCEEE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD-GNFIG 425 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-g~~la 425 (1130)
+..+..++|++--- -+|++..|-.|+|||-....... .-......|+|++|-|. ++-|+
T Consensus 98 ~~dlr~~aWhqH~~-~fava~nddvVriy~ksst~pt~-------------------Lks~sQrnvtclawRPlsasela 157 (445)
T KOG2139|consen 98 EIDLRGVAWHQHII-AFAVATNDDVVRIYDKSSTCPTK-------------------LKSVSQRNVTCLAWRPLSASELA 157 (445)
T ss_pred hcceeeEeechhhh-hhhhhccCcEEEEeccCCCCCce-------------------ecchhhcceeEEEeccCCcceee
Confidence 34678899999443 47788899999999977622211 11233568999999996 55788
Q ss_pred EEeCCCeEEEEEecCCccc-----------eeeeeeecCCCCeeEEEEecCCCceEEEEEcC-CCcEEEEe-cCCCeeeE
Q 001184 426 VAFTKHLIHLYTYQGSNDL-----------CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD-DKLIRVWD-LSGRKLFQ 492 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~-----------~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~-d~~v~iwd-~~~~~~~~ 492 (1130)
+|+..| |.+|........ .+...-.|| .+|++++|.+||. .+++++. |..|.||| .+|.++.-
T Consensus 158 vgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL 233 (445)
T KOG2139|consen 158 VGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPL 233 (445)
T ss_pred eeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccc
Confidence 888766 899987431111 111223455 5899999999999 6777764 67899999 66666544
Q ss_pred ecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEe
Q 001184 493 FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEW 572 (1130)
Q Consensus 493 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1130)
...-.+.+.-+.|+| |+.+|+.++-|+..++|+....-.........+.|...+|+|+|++|+.+.. +...|+-.
T Consensus 234 ~~~glgg~slLkwSP--dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s---gsp~lysl 308 (445)
T KOG2139|consen 234 IPKGLGGFSLLKWSP--DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS---GSPRLYSL 308 (445)
T ss_pred cccCCCceeeEEEcC--CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc---CCceEEEE
Confidence 444557788888865 5579999999999999965443333333334448999999999999887653 12223221
Q ss_pred eC--CCCc-----------eeEEE------ec--ccCceeEEEEEcCCCCEEEEEeCC--------CcEEEEeCCCCcee
Q 001184 573 NE--SEGA-----------LKRTY------IG--FRKKSAGVVQFDTTRNRILAAGED--------NQIKFWDMDNVNML 623 (1130)
Q Consensus 573 d~--~~~~-----------~~~~~------~~--~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~vwd~~~~~~~ 623 (1130)
.. +.+. ++..+ .+ .-.+...+++|.|.|.++++.-.. +.|.+||....-.+
T Consensus 309 ~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~v 388 (445)
T KOG2139|consen 309 TFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPV 388 (445)
T ss_pred eecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCce
Confidence 11 1110 00001 11 012367789999999999986433 34677887665444
Q ss_pred EEE--eccCCCCCcceEEEcC---CCCEEEEEeCCCcEEEEEc
Q 001184 624 TST--EAEGGLPSLPRLRFNK---EGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 624 ~~~--~~~~~~~~i~~v~~s~---~~~~l~~~~~dg~i~iw~~ 661 (1130)
... ...++. ....+.|+| ++.+|.++-..|.+.-|++
T Consensus 389 els~cg~i~ge-~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 389 ELSYCGMIGGE-YPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred EEEecccccCC-CCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 333 111221 245677776 6778888888888877765
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.9e-09 Score=127.09 Aligned_cols=515 Identities=14% Similarity=0.154 Sum_probs=282.1
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEE----EecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001184 407 DSSISVSRVAWSPDGNFIGVAFTKHLIHLY----TYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRV 482 (1130)
Q Consensus 407 ~h~~~V~~v~~spdg~~las~~~d~~i~vw----d~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~i 482 (1130)
...+.|.++.|-+|...|+.+..+|.|.+. +..+.. +. ....-...|.+++||||+. +|+....++++.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~ 146 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLL 146 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEE
Confidence 345789999999999999999999999999 544432 22 2233456899999999999 6777777888888
Q ss_pred EecCCCeeeEecCCCcC-----EEEEeecccCCccEEEEEecCCcE-E-EEEccCC-cceeeecCCCccEEEEEEecCCC
Q 001184 483 WDLSGRKLFQFEGHEAP-----VYSVCPHQKENIHFIFSTAVDGKI-K-AWLYDNV-GSRVDYDAPGLWCTTMLYSADGS 554 (1130)
Q Consensus 483 wd~~~~~~~~~~~h~~~-----v~~~~~~~~~~~~~l~s~s~dg~i-~-vwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~ 554 (1130)
...+-..+....-+... -.++-|-... .=+=|+.-+.. + .=+.... .....+. ....-..++|..||.
T Consensus 147 mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKe---TQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~ 222 (928)
T PF04762_consen 147 MTRDFDPISEVPLDSDDFGESKHVSVGWGKKE---TQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGE 222 (928)
T ss_pred EeccceEEEEeecCccccCCCceeeeccCccc---CccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCc
Confidence 77666666554433221 1122221110 00000000000 0 0000000 0001112 233456899999999
Q ss_pred eEEEeeecCC-C-CcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCceeEEEecc
Q 001184 555 RLFSCGTSKE-G-DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGE---DNQIKFWDMDNVNMLTSTEAE 629 (1130)
Q Consensus 555 ~l~~~~~~~~-~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~ 629 (1130)
++|+.+.+.. + ...+++|+.+ |.+..+-.. ..+--.+++|-|.|++|++... ...|.+|.. +|-.-..+...
T Consensus 223 yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~-v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~ 299 (928)
T PF04762_consen 223 YFAVSSVEPETGSRRVIRVYSRE-GELQSTSEP-VDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLR 299 (928)
T ss_pred EEEEEEEEcCCCceeEEEEECCC-ceEEecccc-CCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecC
Confidence 9998876333 2 5889999954 765554442 2334556899999999998754 456777774 44444444433
Q ss_pred --CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccC
Q 001184 630 --GGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVD 707 (1130)
Q Consensus 630 --~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~ 707 (1130)
.....|..+.|++|+..||+...|. |.+|-..+-.
T Consensus 300 ~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH------------------------------------------ 336 (928)
T PF04762_consen 300 FDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH------------------------------------------ 336 (928)
T ss_pred CCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE------------------------------------------
Confidence 2334789999999999999988665 9999865431
Q ss_pred CCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccC-CeEEEee
Q 001184 708 RSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSG-IGILALW 786 (1130)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g-~~l~~~~ 786 (1130)
|-+. ..+.++ ....+..+.|+|.. ..+....
T Consensus 337 ------------------------------------WYLK--------qei~~~----~~~~~~~~~Wdpe~p~~L~v~t 368 (928)
T PF04762_consen 337 ------------------------------------WYLK--------QEIRFS----SSESVNFVKWDPEKPLRLHVLT 368 (928)
T ss_pred ------------------------------------EEEE--------EEEEcc----CCCCCCceEECCCCCCEEEEEe
Confidence 1100 000000 11122235666643 3455555
Q ss_pred eCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEec-CCCEEEEEeCCeEEEEECCCce
Q 001184 787 SNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSK-NDSYVMSAGGGKVSLFNMMNFK 865 (1130)
Q Consensus 787 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~-dg~~la~~~dg~i~iwd~~~~~ 865 (1130)
.+|.+..+++. |+...+. ..+| |...+++-.+.++.+-.+....
T Consensus 369 ~~g~~~~~~~~------------------~~v~~s~-----------------~~~~~D~g~vaVIDG~~lllTpf~~a~ 413 (928)
T PF04762_consen 369 SNGQYEIYDFA------------------WDVSRSP-----------------GSSPNDNGTVAVIDGNKLLLTPFRRAV 413 (928)
T ss_pred cCCcEEEEEEE------------------EEEEecC-----------------CCCccCceEEEEEeCCeEEEecccccC
Confidence 55666655431 1111000 0011 2223344444557776665432
Q ss_pred e-----EEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeE--------EEEEe----------cCCCCeeE
Q 001184 866 V-----MTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV--------KTKLK----------GHQKHITG 922 (1130)
Q Consensus 866 ~-----~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~--------~~~l~----------~h~~~V~~ 922 (1130)
. ...+. -...|.+++|++ ++..+|+-..||.|.+|....... ...+. .-...+..
T Consensus 414 VPPPMs~~~l~-~~~~v~~vaf~~-~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (928)
T PF04762_consen 414 VPPPMSSYELE-LPSPVNDVAFSP-SNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQ 491 (928)
T ss_pred CCchHhceEEc-CCCCcEEEEEeC-CCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEE
Confidence 2 12232 346799999999 666688899999999998653211 11111 12345788
Q ss_pred EEEccCCCeEEEEeCC---CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCc-EEEEEcCCcEEEEECCCcee
Q 001184 923 LAFSTNLNILVSSGSD---AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV-RLLVNHETQLAIYDGSKMEC 998 (1130)
Q Consensus 923 l~~s~dg~~L~s~s~D---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~d~~i~v~d~~~~~~ 998 (1130)
++|..+...++....+ ..+.++++...+........ . .....+..+...++.. .++-..+|.+..++......
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~ 568 (928)
T PF04762_consen 492 LAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESS-T--EVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELS 568 (928)
T ss_pred EEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEE-e--ccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCcc
Confidence 8998887777766654 57888888543221111111 1 1113444444555554 33336688887666554332
Q ss_pred e-eeeecCCCCCCCeEEEEECCCCC---EEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCC
Q 001184 999 I-RQWVPQDVLSSPISSAAYSCNSQ---LIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQE 1074 (1130)
Q Consensus 999 ~-~~~~~~~~~~~~v~~v~~s~dg~---~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1074 (1130)
. ..+... .+-..++...+.. .++.-+..|.+++ ++..++ ..++++..+
T Consensus 569 ~~~~fp~~----c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la-----------------~~~tSF~v~--- 620 (928)
T PF04762_consen 569 QIVKFPQP----CPWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLA-----------------SNCTSFAVT--- 620 (928)
T ss_pred ccccCCCC----CcEEEEEEECCccceeEEEEECCCCEEEE----CCEEEe-----------------cCCceEEEE---
Confidence 2 122211 1222333333333 3443344455554 222221 112334333
Q ss_pred CCEEEEEeCCCcEEEEeCC
Q 001184 1075 PNQLAVGLTDGSVKVIEPS 1093 (1130)
Q Consensus 1075 ~~~l~s~~~Dg~v~vW~~~ 1093 (1130)
+.+|+.......+++.++.
T Consensus 621 ~~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 621 DSFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred cCEEEEEecCceEEEEECc
Confidence 2456666667779999998
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.4e-12 Score=128.97 Aligned_cols=204 Identities=8% Similarity=0.083 Sum_probs=138.2
Q ss_pred CceeEEEEecCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEE
Q 001184 834 DVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKT 911 (1130)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~ 911 (1130)
..|++|.+.+||..+++++ +..|.|||..++..+.......+.++-+.||| |+.+|..++-|+..++|+........
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~e 274 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKE 274 (445)
T ss_pred ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceec
Confidence 7899999999999999998 67899999999988776655567799999999 88899999999999999665443333
Q ss_pred EEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccc-----------eeeEe-------ccCCCCCCCeEEEEE
Q 001184 912 KLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRK-----------SIAIQ-------LPAGKLPVGETRVQF 973 (1130)
Q Consensus 912 ~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~-----------~~~~~-------~~~~~~~~~v~~~~~ 973 (1130)
...--++.|...+|+|+|++|..+... .-++|.+.-.++.. ..... .....-.+++.+++|
T Consensus 275 rw~lgsgrvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~law 353 (445)
T KOG2139|consen 275 RWILGSGRVQTACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAW 353 (445)
T ss_pred ceeccCCceeeeeecCCCCEEEEEEcC-CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeE
Confidence 444445689999999999976654432 23445443211110 00000 000111257889999
Q ss_pred cCCCcEEEEEcC---------CcEEEEECCCceeeeeeecCCCCCCCeEEEEECC---CCCEEEEEeCCCcEEEEeCC
Q 001184 974 HSDQVRLLVNHE---------TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSC---NSQLIYATFTDGSIGVFDAD 1039 (1130)
Q Consensus 974 s~d~~~l~~~~d---------~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~---dg~~l~t~~~Dg~i~vwd~~ 1039 (1130)
.|.|.+|++... ..|.+||....-.+............-..++|.| +|.+|..+=+-|.|.-|++.
T Consensus 354 DpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 354 DPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred CCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 999999998432 2366777765444443322211123345677766 56677777778888888764
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.6e-13 Score=130.28 Aligned_cols=253 Identities=12% Similarity=0.104 Sum_probs=187.2
Q ss_pred CCCceeEEEEecCCCEEEEEe-CCeEEEEECCCc---eeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEee-c
Q 001184 832 AEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNF---KVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR-V 906 (1130)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~---~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~-~ 906 (1130)
...+|+|.||++|+..+|++. ...|.||..... +...++..|...|+.++|+| ....|++++.|..-+||... .
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCC
Confidence 367899999999999999998 568999987654 56788899999999999999 78889999999999999984 3
Q ss_pred C--eEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE-E
Q 001184 907 D--EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-N 983 (1130)
Q Consensus 907 ~--~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~ 983 (1130)
+ +....+..|....+++.|+|.++.+|+++.-..|.||-++.... -.............|.++.|+|++-+|++ +
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd--WWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND--WWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc--eehhhhhCCccccceeeeeccCCcceecccc
Confidence 3 45556677899999999999999999999999999998876321 10011111222378999999999999998 5
Q ss_pred cCCcEEEEECC-----C-------------ceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCccccc
Q 001184 984 HETQLAIYDGS-----K-------------MECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRC 1045 (1130)
Q Consensus 984 ~d~~i~v~d~~-----~-------------~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~ 1045 (1130)
.|+..+||..- . |+++.++.. ..+.|..+.|+|+|..|+-.+.|.++.+=|....+...
T Consensus 166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~---~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v 242 (361)
T KOG1523|consen 166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASS---SGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERV 242 (361)
T ss_pred cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhcc---CCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhc
Confidence 69999988642 1 222333322 26789999999999999999999999999988776332
Q ss_pred ccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCccCCcccc
Q 001184 1046 RIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWGVAV 1103 (1130)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~~~w~~~~ 1103 (1130)
..-...++ --+++.|..+ ..++.++.|+.=.++...+.. .|....
T Consensus 243 ~~~~~~~l----------P~ls~~~ise--~~vv~ag~~c~P~lf~~~~~~-~l~~~~ 287 (361)
T KOG1523|consen 243 QSVATAQL----------PLLSVSWISE--NSVVAAGYDCGPVLFVTDEEG-GLSFAR 287 (361)
T ss_pred cchhhccC----------CceeeEeecC--CceeecCCCCCceEEEecccc-ceeeeh
Confidence 22211112 2235666553 467777777655566665554 454433
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-08 Score=125.64 Aligned_cols=504 Identities=14% Similarity=0.168 Sum_probs=283.7
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEE----eCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCC
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLW----DVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 421 (1130)
..+.|.++.|-++... ++.+..+|.|.+. +..+.... +...-...|.+++||||+
T Consensus 74 ~~~~ivs~~yl~d~~~-l~~~~~~Gdi~~~~~~~~~~~~~~E--------------------~VG~vd~GI~a~~WSPD~ 132 (928)
T PF04762_consen 74 PNDKIVSFQYLADSES-LCIALASGDIILVREDPDPDEDEIE--------------------IVGSVDSGILAASWSPDE 132 (928)
T ss_pred CCCcEEEEEeccCCCc-EEEEECCceEEEEEccCCCCCceeE--------------------EEEEEcCcEEEEEECCCc
Confidence 4579999999999984 7788889999999 55544332 234456789999999999
Q ss_pred CEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecC--CCceEEEEEcCCCcEEEEe-cCCCee--------
Q 001184 422 NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIRVWD-LSGRKL-------- 490 (1130)
Q Consensus 422 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d--~~~l~l~s~s~d~~v~iwd-~~~~~~-------- 490 (1130)
..||..+.++++.+.+.. -..+ .-..+.++ |.. ..++.|..+.=.-+. ..|+..
T Consensus 133 Ella~vT~~~~l~~mt~~-fd~i-------------~E~~l~~~~~~~~-~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~ 197 (928)
T PF04762_consen 133 ELLALVTGEGNLLLMTRD-FDPI-------------SEVPLDSDDFGES-KHVSVGWGKKETQFHGSAGKAAARQLRDPT 197 (928)
T ss_pred CEEEEEeCCCEEEEEecc-ceEE-------------EEeecCccccCCC-ceeeeccCcccCccCcchhhhhhhhccCCC
Confidence 999999999988876421 1111 11111111 100 233333221111111 112210
Q ss_pred ------eEecCCCcCEEEEeecccCCccEEEEEec---C---CcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEE
Q 001184 491 ------FQFEGHEAPVYSVCPHQKENIHFIFSTAV---D---GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFS 558 (1130)
Q Consensus 491 ------~~~~~h~~~v~~~~~~~~~~~~~l~s~s~---d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1130)
..+. +...-..++| .+||.++++.+. . ..+|||+-+ +.....-+.-.+--.+++|.|.|++||+
T Consensus 198 ~~~~d~~~~s-~dd~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~ 273 (928)
T PF04762_consen 198 VPKVDEGKLS-WDDGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIAS 273 (928)
T ss_pred CCccccCccc-cCCCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEE
Confidence 1112 3334445555 688899988875 2 478999865 3322222222333457899999999998
Q ss_pred eeecCCCCcEEEEeeCCCCceeEEEecc---cCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee--EEEeccCCCC
Q 001184 559 CGTSKEGDSHLVEWNESEGALKRTYIGF---RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNML--TSTEAEGGLP 633 (1130)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~ 633 (1130)
... ......|.+|. ++|-.-..|.-. ....+..+.|++++..|+..-.|. |.+|...+.... +.+..... .
T Consensus 274 ~q~-~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~ 349 (928)
T PF04762_consen 274 SQR-LPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-E 349 (928)
T ss_pred EEE-cCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-C
Confidence 875 33356677776 455554444432 344788899999999999977655 999999887633 33333222 2
Q ss_pred CcceEEEcCC-CCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCC
Q 001184 634 SLPRLRFNKE-GNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPA 712 (1130)
Q Consensus 634 ~i~~v~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~ 712 (1130)
.+..+.|+|. ...|.+.+.+|.+..+++.-.. ..++.
T Consensus 350 ~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v-----------------------------~~s~~------------- 387 (928)
T PF04762_consen 350 SVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDV-----------------------------SRSPG------------- 387 (928)
T ss_pred CCCceEECCCCCCEEEEEecCCcEEEEEEEEEE-----------------------------EecCC-------------
Confidence 4556999994 5567777777887776642210 00000
Q ss_pred CCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEE
Q 001184 713 RPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQK 792 (1130)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~ 792 (1130)
. +|+...+++.-+...+.
T Consensus 388 -----------------------------------------------------~---------~~~D~g~vaVIDG~~ll 405 (928)
T PF04762_consen 388 -----------------------------------------------------S---------SPNDNGTVAVIDGNKLL 405 (928)
T ss_pred -----------------------------------------------------C---------CccCceEEEEEeCCeEE
Confidence 0 00001111111222333
Q ss_pred eeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeE----
Q 001184 793 LWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVM---- 867 (1130)
Q Consensus 793 iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~---- 867 (1130)
+-.+......|.-. .+. + .....|.+++|++++..+++-. ||.|.+|........
T Consensus 406 lTpf~~a~VPPPMs--------~~~----------l--~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~ 465 (928)
T PF04762_consen 406 LTPFRRAVVPPPMS--------SYE----------L--ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKP 465 (928)
T ss_pred EecccccCCCchHh--------ceE----------E--cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccC
Confidence 32222211111100 000 0 2357899999999988666554 899999885432211
Q ss_pred ----EEE----------eCCCCCeEEEEEeCCCCcEEEEEeCC---CcEEEEEeecC---eEEEEEecCCCCeeEEEEcc
Q 001184 868 ----TTF----------MSPPPASTFLAFHPQDNNIIAIGMED---STIQIYNVRVD---EVKTKLKGHQKHITGLAFST 927 (1130)
Q Consensus 868 ----~~~----------~~~~~~i~~l~~sp~~~~~lasg~~d---g~v~iwd~~~~---~~~~~l~~h~~~V~~l~~s~ 927 (1130)
..+ ......+..++|.. +..+++....+ ..+.++++... ..+.....-.+.+..+...+
T Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (928)
T PF04762_consen 466 PKLLSSISLDSMDISDSELPLGSLRQLAWLN-DDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP 544 (928)
T ss_pred cchhhhcccccccccccccccccEEEEEEeC-CCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC
Confidence 111 11234578888887 56666665554 57888887433 22333333445566666666
Q ss_pred CCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCc--EEEEE--cCCcEEEEECCCceeeeeee
Q 001184 928 NLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV--RLLVN--HETQLAIYDGSKMECIRQWV 1003 (1130)
Q Consensus 928 dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~~~--~d~~i~v~d~~~~~~~~~~~ 1003 (1130)
+...++.-..||.+...+........ .+.+.. ..-..+....+.. .++.| ..+.+++ ++..+
T Consensus 545 ~~~~~~~q~~~G~v~~~~~~~~~~~~---~~fp~~---c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~l---- 610 (928)
T PF04762_consen 545 DSGSLYIQTNDGKVFQLSSDGELSQI---VKFPQP---CPWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLL---- 610 (928)
T ss_pred CCcEEEEEECCCEEEEeecCCCcccc---ccCCCC---CcEEEEEEECCccceeEEEEECCCCEEEE----CCEEE----
Confidence 65557777889988866655532211 111111 2222333333322 23333 3333333 22222
Q ss_pred cCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 001184 1004 PQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039 (1130)
Q Consensus 1004 ~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~ 1039 (1130)
...++++++. +.+|+.......+++.++.
T Consensus 611 -----a~~~tSF~v~--~~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 611 -----ASNCTSFAVT--DSFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred -----ecCCceEEEE--cCEEEEEecCceEEEEECc
Confidence 3477888875 5566666667889999988
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.4e-11 Score=134.55 Aligned_cols=199 Identities=17% Similarity=0.178 Sum_probs=149.6
Q ss_pred CEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEe
Q 001184 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF 428 (1130)
Q Consensus 349 ~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~ 428 (1130)
.|....+.-+.+ .++.++.+..+-|||...+....... .+.. .--....-+-++++.-++++|+
T Consensus 89 wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~-------~~er--------~~l~~~~~~g~s~~~~~i~~gs 152 (967)
T KOG0974|consen 89 WIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQ-------SDER--------CTLYSSLIIGDSAEELYIASGS 152 (967)
T ss_pred cccccchhhhcc-eEEEEEcCceEEEEecccCceehhcC-------CCce--------EEEEeEEEEeccCcEEEEEecc
Confidence 344455555666 47888889999999998876654210 0000 0001223345677888999999
Q ss_pred CCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeee-EecCCCcCEEEEeec
Q 001184 429 TKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLF-QFEGHEAPVYSVCPH 506 (1130)
Q Consensus 429 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~-~~~~h~~~v~~~~~~ 506 (1130)
.-+.|.+|+....+ .. ..+.||.+.|.++.|+.||+ ++++.|+|.++|+|+ .+++.+. ...+|+.+|+.++|.
T Consensus 153 v~~~iivW~~~~dn-~p--~~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~ 227 (967)
T KOG0974|consen 153 VFGEIIVWKPHEDN-KP--IRLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFL 227 (967)
T ss_pred ccccEEEEeccccC-Cc--ceecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeEEEEec
Confidence 99999999998322 11 15789999999999999999 899999999999999 6666555 677899999999997
Q ss_pred ccCCccEEEEEecCCcEEEEEccCCcceeeecCC-CccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCC
Q 001184 507 QKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP-GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577 (1130)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1130)
+. .+++++.|-+.++|+.+..+.. .+..| ...+..++..++...+++++. |+.+++||+...
T Consensus 228 ~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~----Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 228 PN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGN----DSTLKLWDLNGR 290 (967)
T ss_pred cc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeecc----Ccchhhhhhhcc
Confidence 63 8999999999999976654443 44444 347899999998888888886 999999997653
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.5e-09 Score=111.32 Aligned_cols=524 Identities=14% Similarity=0.103 Sum_probs=280.3
Q ss_pred CcccceeeeccCCCCEEEEEEecCCCeEEEE----E--eCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCC
Q 001184 335 DLPRAVACTMHQGSSVVSMDFHPFHHTLLVV----G--CGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDS 408 (1130)
Q Consensus 335 ~~~~~~~~~~~h~~~V~~v~fspdg~~llas----g--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 408 (1130)
-..++..+...|-+-|+--.|+|||+.+.++ | ..-+.+.+.+.+.|+..+. ++-|
T Consensus 66 lk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRi------------------TyfG- 126 (668)
T COG4946 66 LKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRI------------------TYFG- 126 (668)
T ss_pred hccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEE------------------EEec-
Confidence 3355666777788889999999999975442 2 2234578888888887642 1222
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCe----EEEEEecCCcc-ceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCC-----
Q 001184 409 SISVSRVAWSPDGNFIGVAFTKHL----IHLYTYQGSND-LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK----- 478 (1130)
Q Consensus 409 ~~~V~~v~~spdg~~las~~~d~~----i~vwd~~~~~~-~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~----- 478 (1130)
...-.-.-|+|||+.|++...-.- -.+|.+..... .. .+ .-++.+.+.+- ||. ++.|-.--
T Consensus 127 r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e---~L--nlGpathiv~~-dg~---ivigRntydLP~W 197 (668)
T COG4946 127 RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTE---PL--NLGPATHIVIK-DGI---IVIGRNTYDLPHW 197 (668)
T ss_pred cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceee---ec--cCCceeeEEEe-CCE---EEEccCcccCccc
Confidence 222334569999999988754322 22343332111 11 11 23445555554 343 33332111
Q ss_pred -------cEEEEe--cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcc--eeeecCCCccEEEE
Q 001184 479 -------LIRVWD--LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS--RVDYDAPGLWCTTM 547 (1130)
Q Consensus 479 -------~v~iwd--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~ 547 (1130)
.=++|- ..|+....+..-.+.|.+-.+. .+ +.-+...-||.=.+|..+-... ......+ ...+-
T Consensus 198 K~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV--~~-RvYFlsD~eG~GnlYSvdldGkDlrrHTnFt--dYY~R 272 (668)
T COG4946 198 KGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIV--GE-RVYFLSDHEGVGNLYSVDLDGKDLRRHTNFT--DYYPR 272 (668)
T ss_pred ccccCCccceEEEEecCCcceeeeeecCCCcCCceEE--cc-eEEEEecccCccceEEeccCCchhhhcCCch--hcccc
Confidence 124565 2332333333223333322221 11 1222223344333443322221 1111111 12333
Q ss_pred EEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecc-----cCc--eeEE---E-EEcC-CCCEEEEEeCCCcEEEE
Q 001184 548 LYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGF-----RKK--SAGV---V-QFDT-TRNRILAAGEDNQIKFW 615 (1130)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~-----~~~--~v~~---~-~~~~-~~~~l~~~~~dg~i~vw 615 (1130)
..+.||+.++... .|.|++||..+..+.+.--+. ... .+.- + .|++ +|.+++..+. |...|.
T Consensus 273 ~~nsDGkrIvFq~-----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~ 346 (668)
T COG4946 273 NANSDGKRIVFQN-----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIM 346 (668)
T ss_pred ccCCCCcEEEEec-----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEE
Confidence 4567999988764 678999998876554322220 000 0110 1 1222 5678888876 677777
Q ss_pred eCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCC-cEEEEEcCCCchhhhhhcccccccccccccccccccceee
Q 001184 616 DMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQ-GIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVT 694 (1130)
Q Consensus 616 d~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1130)
+...+-.++.- +...|.-..+.-+++-++.|..|| .+-|++..++. ..+ +
T Consensus 347 ~~~~~~~iqv~----~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr-~----------------------- 397 (668)
T COG4946 347 RPWDGYSIQVG----KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKR-I----------------------- 397 (668)
T ss_pred CCCCCeeEEcC----CCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEE-e-----------------------
Confidence 76555444332 222466667777777889999998 89999987762 100 0
Q ss_pred ccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEE
Q 001184 695 TITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLL 774 (1130)
Q Consensus 695 ~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 774 (1130)
...-+.|.++.
T Consensus 398 ---------------------------------------------------------------------e~~lg~I~av~ 408 (668)
T COG4946 398 ---------------------------------------------------------------------EKDLGNIEAVK 408 (668)
T ss_pred ---------------------------------------------------------------------eCCccceEEEE
Confidence 11456788999
Q ss_pred EeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-C
Q 001184 775 YTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-G 853 (1130)
Q Consensus 775 ~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-d 853 (1130)
.+++|+.++++.....+.+.|++.+.. .... ....+-|+..+|+|+++++|.+- +
T Consensus 409 vs~dGK~~vvaNdr~el~vididngnv----------------------~~id--kS~~~lItdf~~~~nsr~iAYafP~ 464 (668)
T COG4946 409 VSPDGKKVVVANDRFELWVIDIDNGNV----------------------RLID--KSEYGLITDFDWHPNSRWIAYAFPE 464 (668)
T ss_pred EcCCCcEEEEEcCceEEEEEEecCCCe----------------------eEec--ccccceeEEEEEcCCceeEEEecCc
Confidence 999999999888777777766554322 2111 13466789999999999999985 4
Q ss_pred ----CeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEE--EecCCCCeeEEE---
Q 001184 854 ----GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK--LKGHQKHITGLA--- 924 (1130)
Q Consensus 854 ----g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~--l~~h~~~V~~l~--- 924 (1130)
..|+++|+.+++...... ....-.+-+|.| ++++|..-+.-. .|....+.+.. +..|+.+-..+-
T Consensus 465 gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~-d~ryLYfLs~Rs----LdPs~Drv~fnf~f~~vskPylv~L~~g 538 (668)
T COG4946 465 GYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDP-DGRYLYFLSARS----LDPSNDRVIFNFSFQRVSKPYLVVLGRG 538 (668)
T ss_pred ceeeeeEEEEecCCCeEEEecC-CcccccCcccCC-CCcEEEEEeccc----cCCCCCeeEEEEEEeeeccceEEEecCC
Confidence 459999999987765443 344455678888 787776554221 11111121111 122222211110
Q ss_pred -EccCCCeEEE-EeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE---------------cCCc
Q 001184 925 -FSTNLNILVS-SGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN---------------HETQ 987 (1130)
Q Consensus 925 -~s~dg~~L~s-~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~---------------~d~~ 987 (1130)
.||-.+..-. -+.+|.+-+=+++. + ..++... +..-.+++--.+|+.+..+ .-|.
T Consensus 539 ~~sP~~q~p~~~~~ea~e~dle~ie~---r-~eP~pVe----e~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~ 610 (668)
T COG4946 539 YYSPFNQPPDEANSEAGEVDLEGIED---R-VEPFPVE----EGDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGR 610 (668)
T ss_pred CCChhhcCchhcCccccceehhhhcc---c-ccccccC----ccceeEeeecCCCeEEEEEeeccchhhhhhcCCCccce
Confidence 1221111111 12233332222222 0 1111111 1222333333444333321 2356
Q ss_pred EEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCc
Q 001184 988 LAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSL 1041 (1130)
Q Consensus 988 i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~ 1041 (1130)
+.+||+++.+.-.. ...++++..|+||+.+.. -.||.+++++++..
T Consensus 611 l~~ydletkk~~e~-------k~nvss~rlS~D~s~ilv-k~d~kl~~f~vekk 656 (668)
T COG4946 611 LEKYDLETKKVEEY-------KDNVSSFRLSSDGSKILV-KLDGKLRLFDVEKK 656 (668)
T ss_pred EEEEecchhhHHHH-------hcccceEEEcCCCCEEEE-EeCCeEEEEecccC
Confidence 77888876543221 457899999999999888 77999999999863
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-13 Score=143.16 Aligned_cols=240 Identities=15% Similarity=0.187 Sum_probs=166.4
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC--CC
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP--DG 421 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg 421 (1130)
.+|.+.|.|++|+.||. +|++|+.|-.+.|||.-..+.++. +-.||.+.|.|+.|-| +.
T Consensus 47 ~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFvP~tnn 107 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFVPYTNN 107 (758)
T ss_pred ccccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeeeccCCC
Confidence 36999999999999998 799999999999999987666553 5679999999999999 56
Q ss_pred CEEEEEeCCCeEEEEEecCCc-------cceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCC--CeeeE
Q 001184 422 NFIGVAFTKHLIHLYTYQGSN-------DLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSG--RKLFQ 492 (1130)
Q Consensus 422 ~~las~~~d~~i~vwd~~~~~-------~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~--~~~~~ 492 (1130)
+.+++|..|..|+++|+...+ ...+...+..|...|..|+-.|++.+ .+.++++||+++-+|... .+-..
T Consensus 108 riv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~p~ 186 (758)
T KOG1310|consen 108 RIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCNPD 186 (758)
T ss_pred eEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCCcc
Confidence 789999999999999997522 12333456789999999999999966 899999999999999322 22111
Q ss_pred ---------ecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeee-----cCCCccEEEEE-EecCCCeEE
Q 001184 493 ---------FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY-----DAPGLWCTTML-YSADGSRLF 557 (1130)
Q Consensus 493 ---------~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-----~~~~~~v~~~~-~s~~~~~l~ 557 (1130)
+...--...++.++|... .+|+.|+.|-..++||.+...+...- ........++. |+|.+-
T Consensus 187 ~~~~~~l~ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl--- 262 (758)
T KOG1310|consen 187 EDCPSILVNYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL--- 262 (758)
T ss_pred ccccHHHHHhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc---
Confidence 112223456777877544 79999999999999996432222110 01111122222 122111
Q ss_pred EeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEe
Q 001184 558 SCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTE 627 (1130)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 627 (1130)
. ...+..... -...+-++|+|+|.-++..-....|+++|+..++......
T Consensus 263 -k--------------n~~gn~~~~-----~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 263 -K--------------NSQGNLDRY-----ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred -c--------------Ccccccccc-----eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 0 001111111 0135568899999877765555689999999887655543
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.2e-12 Score=146.19 Aligned_cols=224 Identities=15% Similarity=0.138 Sum_probs=148.5
Q ss_pred ecCCCccEEEEEEcCCCCEEEEEeCC---CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001184 405 VKDSSISVSRVAWSPDGNFIGVAFTK---HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR 481 (1130)
Q Consensus 405 ~~~h~~~V~~v~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~ 481 (1130)
+..+...+.+.+|||||+.||..+.+ ..|.+||+.+++... +....+.+.+.+|+|||+. ++++.+.++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 265 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ 265 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence 34567789999999999999987643 469999999886432 3334455678999999995 345677888777
Q ss_pred EEe--cCCCeeeEecCCCcCEEEEeecccCCccEEEEEe-cCCcEEEEEccCC-cceeeecCCCccEEEEEEecCCCeEE
Q 001184 482 VWD--LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA-VDGKIKAWLYDNV-GSRVDYDAPGLWCTTMLYSADGSRLF 557 (1130)
Q Consensus 482 iwd--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1130)
||. ..+..+..+..+........|++ ||+.|+..+ .+|...+|.++.. .....+...........|+|||++++
T Consensus 266 Iy~~d~~~~~~~~lt~~~~~~~~~~wSp--DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 266 IYTVNADGSGLRRLTQSSGIDTEPFFSP--DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLA 343 (427)
T ss_pred EEEEECCCCCcEECCCCCCCCcCeEEcC--CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEE
Confidence 776 55666677766666666777754 556666555 3567777766432 22222222333345678999999999
Q ss_pred EeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCceeEEEeccCCCCC
Q 001184 558 SCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDN---QIKFWDMDNVNMLTSTEAEGGLPS 634 (1130)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~ 634 (1130)
..+.. .+...|++||+.+++......+ . ......|+|+|+.|+.++.++ .+++.+. ++.....+..+.+ .
T Consensus 344 ~~s~~-~g~~~I~v~d~~~g~~~~lt~~-~--~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g--~ 416 (427)
T PRK02889 344 YISRV-GGAFKLYVQDLATGQVTALTDT-T--RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGG--D 416 (427)
T ss_pred EEEcc-CCcEEEEEEECCCCCeEEccCC-C--CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCC--C
Confidence 77642 2245799999988875543322 1 235678999999888876544 3666666 4555555543322 4
Q ss_pred cceEEEcC
Q 001184 635 LPRLRFNK 642 (1130)
Q Consensus 635 i~~v~~s~ 642 (1130)
+...+|+|
T Consensus 417 ~~~p~wsp 424 (427)
T PRK02889 417 VREPSWGP 424 (427)
T ss_pred CCCCccCC
Confidence 66677776
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.4e-12 Score=144.56 Aligned_cols=237 Identities=13% Similarity=0.053 Sum_probs=160.5
Q ss_pred CeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeC---CCeEEEEEecCCcccee
Q 001184 370 GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFT---KHLIHLYTYQGSNDLCQ 446 (1130)
Q Consensus 370 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~---d~~i~vwd~~~~~~~~~ 446 (1130)
..|.+||....... .+..|...+.+.+|||||+.|+..+. +..|.+||+.+++..
T Consensus 182 ~~l~~~d~dg~~~~--------------------~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-- 239 (435)
T PRK05137 182 KRLAIMDQDGANVR--------------------YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-- 239 (435)
T ss_pred eEEEEECCCCCCcE--------------------EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence 47888988654432 25577889999999999999998764 468999999887642
Q ss_pred eeeeecCCCCeeEEEEecCCCceEEEEEcCCCc--EEEEecCCCeeeEecCCCcCEEEEeecccCCccEEEEEec-CC--
Q 001184 447 SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL--IRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV-DG-- 521 (1130)
Q Consensus 447 ~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~--v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg-- 521 (1130)
.+..+.+.+.+.+|+|||+. ++++.+.++. |.+||..+..+..+..+........|+| |++.|+..+. +|
T Consensus 240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp--DG~~i~f~s~~~g~~ 314 (435)
T PRK05137 240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSP--DGSQIVFESDRSGSP 314 (435)
T ss_pred --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcC--CCCEEEEEECCCCCC
Confidence 24556677889999999995 3456666665 6777855556667776776667777755 5566766653 33
Q ss_pred cEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCC
Q 001184 522 KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN 601 (1130)
Q Consensus 522 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 601 (1130)
.|.+||+...... .+......+....|+|||+.|+..... .+...|.+||..++.. +.+... ..+....|+|||+
T Consensus 315 ~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ia~~~~~-~~~~~i~~~d~~~~~~-~~lt~~--~~~~~p~~spDG~ 389 (435)
T PRK05137 315 QLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLIAFTKQG-GGQFSIGVMKPDGSGE-RILTSG--FLVEGPTWAPNGR 389 (435)
T ss_pred eEEEEECCCCCeE-EeecCCCcccCeEECCCCCEEEEEEcC-CCceEEEEEECCCCce-EeccCC--CCCCCCeECCCCC
Confidence 5777787654433 333334456678899999999987632 2346799999865543 333321 1356688999999
Q ss_pred EEEEEeCC------CcEEEEeCCCCceeEEEeccCCCCCcceEEEcC
Q 001184 602 RILAAGED------NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1130)
Q Consensus 602 ~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~ 642 (1130)
.|+..+.+ ..++++|+..+.. ..+...+ .+...+|+|
T Consensus 390 ~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~---~~~~p~Wsp 432 (435)
T PRK05137 390 VIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPG---DASDPAWSP 432 (435)
T ss_pred EEEEEEccCCCCCcceEEEEECCCCce-EEccCCC---CccCcccCC
Confidence 88775542 3588888876654 3443222 356667776
|
|
| >KOG2659 consensus LisH motif-containing protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-13 Score=131.53 Aligned_cols=173 Identities=18% Similarity=0.235 Sum_probs=130.9
Q ss_pred CcchHHHHHHHHHhhhhccHHHHHHHHHHhcCCCcc---------HHHHHHHHhccCHHHHHHHhccCCCcCCCccchhh
Q 001184 2 SSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFN---------MKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKI 72 (1130)
Q Consensus 2 ~~~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~---------~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~ 72 (1130)
+..++|+.|||+.||...||.++|..+.+|+|+..+ ...+|.+|..|+.++|++.++++..-.-+... .+
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~-~l 101 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR-EL 101 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch-hH
Confidence 346789999999999999999999999999999771 57799999999999999999998322111222 38
Q ss_pred hHHHHHhHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccccccccccccCCC--ChhHHHHHHHHHHhh
Q 001184 73 FFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD--TRSARTIMLVELKKL 150 (1130)
Q Consensus 73 ~~~i~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~--~~~~r~~~~~~l~~~ 150 (1130)
.|.+++|+++||+..+...+|+.|+|++|.|+...+++.++.|...|..-.++... ...... ....|.++.+.+...
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~-~sp~~~l~~~s~R~kvA~~vN~a 180 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQ-ESPSAELLSQSLRQKVASEVNSA 180 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcc-cCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887788888888887775554211 111111 245688888888776
Q ss_pred cccCcCccccccCCCCChHHHHHHHHHHHHHHHh
Q 001184 151 IEANPLFRDKLVFPSLKTSRLRTLINQSLNWQHQ 184 (1130)
Q Consensus 151 ~~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q~~ 184 (1130)
|-...- . -..++|..|++.-+..|..
T Consensus 181 iL~~~~---~-----~~~~~l~~llk~~~~~~~~ 206 (228)
T KOG2659|consen 181 ILASQE---H-----ESEPKLPFLLKLISWAQEE 206 (228)
T ss_pred HHHHhc---c-----cccchHHHHHHHHHHHHHH
Confidence 543111 0 1245788888655555533
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-12 Score=137.00 Aligned_cols=118 Identities=20% Similarity=0.337 Sum_probs=106.4
Q ss_pred CCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEE
Q 001184 833 EDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKT 911 (1130)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~ 911 (1130)
.+.|...+|+|||++||+.+ ||.+||||..+.+++..++.-.+...|++||| ||++|++|++|..|.||.+...+++.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEE
Confidence 44788899999999999998 99999999999999988888888999999999 99999999999999999999999999
Q ss_pred EEecCCCCeeEEEEcc-----------------------------------CC-------------CeEEEEeCCCcEEE
Q 001184 912 KLKGHQKHITGLAFST-----------------------------------NL-------------NILVSSGSDAQLIF 943 (1130)
Q Consensus 912 ~l~~h~~~V~~l~~s~-----------------------------------dg-------------~~L~s~s~Dg~i~v 943 (1130)
.-.+|...|..|+|.| ++ -++.|++.|..+.+
T Consensus 369 RGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcL 448 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCL 448 (636)
T ss_pred eccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEE
Confidence 9999999999999972 01 25788899999999
Q ss_pred EECCCCcc
Q 001184 944 WNTDTWEK 951 (1130)
Q Consensus 944 wd~~~~~~ 951 (1130)
||+.....
T Consensus 449 WDlteD~L 456 (636)
T KOG2394|consen 449 WDLTEDVL 456 (636)
T ss_pred Eecchhhc
Confidence 99987443
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-13 Score=142.98 Aligned_cols=276 Identities=16% Similarity=0.179 Sum_probs=212.9
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 426 (1130)
.-..+.+.|+.+|++ |+.|+..|.|..+|+.++++..... -...|..+.|-.+.+++|+
T Consensus 129 eFGPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~--------------------v~Etv~Dv~~LHneq~~AV 187 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEIN--------------------VMETVRDVTFLHNEQFFAV 187 (545)
T ss_pred ccCCeeeeecCCccE-EEecCCccceeeeecccceeeeeee--------------------hhhhhhhhhhhcchHHHHh
Confidence 346788999999996 6778889999999999998875321 2347889999999999998
Q ss_pred EeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEee
Q 001184 427 AFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCP 505 (1130)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~ 505 (1130)
+- ...+.|||-.+ ..+. .+..| ..|..+.|.|.-- +|++++..|.++.-| ..|+.+..+..-.+.+..++-
T Consensus 188 AQ-K~y~yvYD~~G-tElH---Clk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~q 259 (545)
T KOG1272|consen 188 AQ-KKYVYVYDNNG-TELH---CLKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQ 259 (545)
T ss_pred hh-hceEEEecCCC-cEEe---ehhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhc
Confidence 84 56799999665 3344 34433 4589999999865 899999999999999 899999999888888888877
Q ss_pred cccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEec
Q 001184 506 HQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG 585 (1130)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1130)
+|-. ..+-+|...|+|.+|.....+....+..|.++|.++++.++|+|+++.|. |..+.|||++....+.++..
T Consensus 260 NP~N--aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 260 NPYN--AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred CCcc--ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeec
Confidence 6543 68889999999999999999999999999999999999999999999997 99999999998776666654
Q ss_pred ccCceeEEEEEcCCCCEEEEEeCCCcEEEEeC-CCC--ceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 586 FRKKSAGVVQFDTTRNRILAAGEDNQIKFWDM-DNV--NMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 586 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~-~~~--~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
......+++|..| +++.+....+.||.- -.+ ..-...-.|.-...|..+.|.|-...|-+|-..|.-.|.-.
T Consensus 334 --p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVP 408 (545)
T KOG1272|consen 334 --PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVP 408 (545)
T ss_pred --CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEecc
Confidence 2256667787655 555556668999942 221 11111222222337899999997777777766665555433
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-11 Score=122.45 Aligned_cols=240 Identities=16% Similarity=0.172 Sum_probs=171.4
Q ss_pred ceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEeCCC--CCeEEEEEeCCCCcEEEEEeCC------CcEEEEEeec
Q 001184 835 VVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPP--PASTFLAFHPQDNNIIAIGMED------STIQIYNVRV 906 (1130)
Q Consensus 835 ~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~l~~sp~~~~~lasg~~d------g~v~iwd~~~ 906 (1130)
...+++|+.|...+++|.+...+||+.+-.+.....+.+. -.+..+-|-. +-+..+|+.+ ..|.|||=..
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~--N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRS--NYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhh--ceEEEecCCCCCCCCCceEEEEeccc
Confidence 3456999999999999999999999988654433222222 2233333322 2233345443 4699999767
Q ss_pred CeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE-E-c
Q 001184 907 DEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-N-H 984 (1130)
Q Consensus 907 ~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~-~ 984 (1130)
.+++.++. ...+|.++.+.+| ++++.- .+.|+||.....-+. .........+.+..++.-+.+..+||. | .
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~---l~~~et~~NPkGlC~~~~~~~k~~LafPg~k 157 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKL---LHVIETRSNPKGLCSLCPTSNKSLLAFPGFK 157 (346)
T ss_pred CcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhh---eeeeecccCCCceEeecCCCCceEEEcCCCc
Confidence 77787776 5688999999876 555554 567999998853211 122222233355666666666667776 3 4
Q ss_pred CCcEEEEECCCcee--eeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCc-EEEEeCCCcccccccCCCcccccCCCCCc
Q 001184 985 ETQLAIYDGSKMEC--IRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGS-IGVFDADSLRLRCRIAPSAYMSQASPNSQ 1061 (1130)
Q Consensus 985 d~~i~v~d~~~~~~--~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1061 (1130)
-|.|+|-|+...+. ...+..| .+.|.+++.+-+|.++||+|..|+ |||||..+|..+..++... .
T Consensus 158 ~GqvQi~dL~~~~~~~p~~I~AH---~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~---------d 225 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPNAPSIINAH---DSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV---------D 225 (346)
T ss_pred cceEEEEEhhhcCcCCceEEEcc---cCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC---------c
Confidence 68999999986555 2444444 899999999999999999999987 8999999999999987433 2
Q ss_pred eeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q 001184 1062 TVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1096 (1130)
Q Consensus 1062 ~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~ 1096 (1130)
.....+++|+| +..+|+++|+.|+|.++.+...+
T Consensus 226 ~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 226 RADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred hheEEEEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 34466788999 57899999999999999997655
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.4e-12 Score=144.72 Aligned_cols=223 Identities=11% Similarity=0.075 Sum_probs=145.2
Q ss_pred eccCCCCEEEEEEecCCCeEEEEEe--CcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC
Q 001184 343 TMHQGSSVVSMDFHPFHHTLLVVGC--GDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1130)
Q Consensus 343 ~~~h~~~V~~v~fspdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 420 (1130)
...+...+.+.+|||||++++++.. .+..|.+||+.+|+... +....+.+...+||||
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~~~~~~~~~~~SPD 253 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRHNGAPAFSPD 253 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccCCCCCcCCeEECCC
Confidence 3456778999999999997554432 24579999998886542 1122233456899999
Q ss_pred CCEEEEE-eCCC--eEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEc-CCCcEEEE--ecCCCeeeEec
Q 001184 421 GNFIGVA-FTKH--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG-DDKLIRVW--DLSGRKLFQFE 494 (1130)
Q Consensus 421 g~~las~-~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s-~d~~v~iw--d~~~~~~~~~~ 494 (1130)
|+.|+.. +.+| .|.+||+++++.. .+..+...+...+|+|||+ .|+..+ .++...|| |..+.....+.
T Consensus 254 G~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~Iy~~d~~~g~~~~lt 327 (429)
T PRK03629 254 GSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQVYKVNINGGAPQRIT 327 (429)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEE----EccCCCCCcCceEECCCCC--EEEEEeCCCCCceEEEEECCCCCeEEee
Confidence 9999865 3344 5889999887643 2344455688999999999 454444 34555555 55554455555
Q ss_pred CCCcCEEEEeecccCCccEEEEEecC---CcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEE
Q 001184 495 GHEAPVYSVCPHQKENIHFIFSTAVD---GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1130)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1130)
.+........|+ ++|+.|+..+.+ ..|.+||++++.... +.. ........|+|||++|+..+.++ +...+++
T Consensus 328 ~~~~~~~~~~~S--pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~~~s~~~-~~~~l~~ 402 (429)
T PRK03629 328 WEGSQNQDADVS--SDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVIYSSSQG-MGSVLNL 402 (429)
T ss_pred cCCCCccCEEEC--CCCCEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEEEEEEcCC-CceEEEE
Confidence 444455566675 455777665543 357888987765433 222 12244678999999999987532 2456888
Q ss_pred eeCCCCceeEEEecccCceeEEEEEcC
Q 001184 572 WNESEGALKRTYIGFRKKSAGVVQFDT 598 (1130)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1130)
+++ +|...+.+.++.. .+...+|+|
T Consensus 403 ~~~-~G~~~~~l~~~~~-~~~~p~Wsp 427 (429)
T PRK03629 403 VST-DGRFKARLPATDG-QVKFPAWSP 427 (429)
T ss_pred EEC-CCCCeEECccCCC-CcCCcccCC
Confidence 887 4555666666443 566677776
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-13 Score=142.94 Aligned_cols=231 Identities=14% Similarity=0.196 Sum_probs=191.2
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCe
Q 001184 410 ISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRK 489 (1130)
Q Consensus 410 ~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~ 489 (1130)
..-..+.++.+|++|+.|+..|.|-.+|..+++... .+. -...|.++.|..+.+ + ++....+.++|||..|..
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~---Ei~-v~Etv~Dv~~LHneq--~-~AVAQK~y~yvYD~~GtE 202 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF---EIN-VMETVRDVTFLHNEQ--F-FAVAQKKYVYVYDNNGTE 202 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeee---eee-hhhhhhhhhhhcchH--H-HHhhhhceEEEecCCCcE
Confidence 356789999999999999999999999999987543 222 345699999999887 4 444567899999999999
Q ss_pred eeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEE
Q 001184 490 LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHL 569 (1130)
Q Consensus 490 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1130)
++.++.| .+|..+.|-|.. -+|++++..|.++.-|+..++.+..+....+.+..++-+|-+..+-+|.. .|+|
T Consensus 203 lHClk~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----nGtV 275 (545)
T KOG1272|consen 203 LHCLKRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----NGTV 275 (545)
T ss_pred Eeehhhc-Cchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----CceE
Confidence 9999865 568888886544 67888999999999999999999888888888999999998888888875 9999
Q ss_pred EEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEE
Q 001184 570 VEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVV 649 (1130)
Q Consensus 570 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~ 649 (1130)
.+|.....+++..+..|.. +|.++++.++|.++++.|.|..++|||+++...+.++.... +...+++|..| +||
T Consensus 276 SlWSP~skePLvKiLcH~g-~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~---~a~~ls~Sqkg-lLA- 349 (545)
T KOG1272|consen 276 SLWSPNSKEPLVKILCHRG-PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPH---PASNLSLSQKG-LLA- 349 (545)
T ss_pred EecCCCCcchHHHHHhcCC-CcceEEECCCCcEEeecccccceeEeeeccccccceeecCC---Ccccccccccc-cee-
Confidence 9999999998888888776 89999999999999999999999999999887666655422 46788888766 344
Q ss_pred EeCCCcEEEEE
Q 001184 650 TTADQGIKILA 660 (1130)
Q Consensus 650 ~~~dg~i~iw~ 660 (1130)
.+....+.||.
T Consensus 350 ~~~G~~v~iw~ 360 (545)
T KOG1272|consen 350 LSYGDHVQIWK 360 (545)
T ss_pred eecCCeeeeeh
Confidence 44556889996
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.6e-12 Score=146.35 Aligned_cols=238 Identities=16% Similarity=0.146 Sum_probs=156.2
Q ss_pred CeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCC---CeEEEEEecCCcccee
Q 001184 370 GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTK---HLIHLYTYQGSNDLCQ 446 (1130)
Q Consensus 370 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d---~~i~vwd~~~~~~~~~ 446 (1130)
..|.+||...+... .+..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++...
T Consensus 184 ~~l~i~D~~g~~~~--------------------~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~- 242 (433)
T PRK04922 184 YALQVADSDGYNPQ--------------------TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL- 242 (433)
T ss_pred EEEEEECCCCCCce--------------------EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-
Confidence 46899998654432 244667789999999999999988743 469999998876432
Q ss_pred eeeeecCCCCeeEEEEecCCCceEEEEEcCCC--cEEEEecCCCeeeEecCCCcCEEEEeecccCCccEEEEEe-cCCc-
Q 001184 447 SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK--LIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA-VDGK- 522 (1130)
Q Consensus 447 ~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~--~v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg~- 522 (1130)
+..+.+...+++|+|||+. ++++.+.++ .|++||..+..+..+..+.......+|++ +++.|+..+ .+|.
T Consensus 243 ---l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~sp--DG~~l~f~sd~~g~~ 316 (433)
T PRK04922 243 ---VASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAP--DGKSIYFTSDRGGRP 316 (433)
T ss_pred ---eccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECC--CCCEEEEEECCCCCc
Confidence 3334455668899999995 344555555 59999954445566666666566777754 556676665 4455
Q ss_pred -EEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCC
Q 001184 523 -IKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN 601 (1130)
Q Consensus 523 -i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 601 (1130)
|.++++.+++.. .+..........+|+|||++++.... .++...|++||+.+++......+ . ......|+|+|+
T Consensus 317 ~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~-~~~~~~I~v~d~~~g~~~~Lt~~--~-~~~~p~~spdG~ 391 (433)
T PRK04922 317 QIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHG-SGGQYRIAVMDLSTGSVRTLTPG--S-LDESPSFAPNGS 391 (433)
T ss_pred eEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEC-CCCceeEEEEECCCCCeEECCCC--C-CCCCceECCCCC
Confidence 555565554432 22233344557899999999988753 22345799999988876533222 1 234568999999
Q ss_pred EEEEEeCC---CcEEEEeCCCCceeEEEeccCCCCCcceEEEcC
Q 001184 602 RILAAGED---NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1130)
Q Consensus 602 ~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~ 642 (1130)
+++..+.+ +.|+++++..+ ....+..+.+ .+...+|+|
T Consensus 392 ~i~~~s~~~g~~~L~~~~~~g~-~~~~l~~~~g--~~~~p~wsp 432 (433)
T PRK04922 392 MVLYATREGGRGVLAAVSTDGR-VRQRLVSADG--EVREPAWSP 432 (433)
T ss_pred EEEEEEecCCceEEEEEECCCC-ceEEcccCCC--CCCCCccCC
Confidence 88876653 46888888544 3444433222 456677776
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-12 Score=136.92 Aligned_cols=262 Identities=13% Similarity=0.202 Sum_probs=196.3
Q ss_pred CccceEEEEEeccCCeEEEeee-CCeEEeeecCCCCCCCCccccccc---cc----------------ccccCCCCccee
Q 001184 766 SASKVARLLYTNSGIGILALWS-NGVQKLWKWNRTEQNPSGKATAAV---AP----------------QHWQPSNGLLMT 825 (1130)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~---~~----------------~~w~~~~~~~~~ 825 (1130)
+....+.+..+|||+++++.|. --.|++||+..-+........+.. .+ .-+....|.-..
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~ 129 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYR 129 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeee
Confidence 6667788999999999988877 689999998765433222111111 00 001122222222
Q ss_pred ccCCCCCCCceeEEEEe-cCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEe
Q 001184 826 NDVPENAEDVVPCVALS-KNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNV 904 (1130)
Q Consensus 826 ~~~~~~~~~~i~~l~~s-~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~ 904 (1130)
..++ ..-..++++ +...++++|+...|+-++++.|+.+..+....+.+.++..++ -..+|++|+.+|.|..||.
T Consensus 130 ~RIP----~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDp 204 (703)
T KOG2321|consen 130 TRIP----KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWDP 204 (703)
T ss_pred eecC----cCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC-ccceEEecccCceEEEecc
Confidence 2121 122334443 455667777788899999999999999998889999999999 8889999999999999999
Q ss_pred ecCeEEEEEe------cCCCC-----eeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEE
Q 001184 905 RVDEVKTKLK------GHQKH-----ITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQF 973 (1130)
Q Consensus 905 ~~~~~~~~l~------~h~~~-----V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 973 (1130)
.+...+.++. .|.+. |+++.|+.||-.+++|+.+|.+.|||+.+.+ ++....+....++..+.|
T Consensus 205 R~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~-----pl~~kdh~~e~pi~~l~~ 279 (703)
T KOG2321|consen 205 RDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK-----PLLVKDHGYELPIKKLDW 279 (703)
T ss_pred hhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC-----ceeecccCCccceeeecc
Confidence 8876665553 34343 9999999999999999999999999999843 445555666688999999
Q ss_pred cCC--CcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCc
Q 001184 974 HSD--QVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSL 1041 (1130)
Q Consensus 974 s~d--~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~ 1041 (1130)
-+. +..+++.+...++|||-.+|+....+.+. ..++.+|+-|++.++++|-++..+..|-+...
T Consensus 280 ~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt----~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 280 QDTDQQNKVVSMDKRILKIWDECTGKPMASIEPT----SDLNDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred cccCCCceEEecchHHhhhcccccCCceeecccc----CCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence 665 55677777888999999999999888775 46999999999999999999888887766543
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.2e-12 Score=142.78 Aligned_cols=225 Identities=17% Similarity=0.141 Sum_probs=144.3
Q ss_pred eeccCCCCEEEEEEecCCCeEEEEEeCc--CeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC
Q 001184 342 CTMHQGSSVVSMDFHPFHHTLLVVGCGD--GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1130)
Q Consensus 342 ~~~~h~~~V~~v~fspdg~~llasg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 419 (1130)
....+...+.+.+|||||++++++...+ ..|.+||+.+++... +....+.+.+.+|||
T Consensus 190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g~~~~~~~SP 249 (427)
T PRK02889 190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKGSNSAPAWSP 249 (427)
T ss_pred EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCCCccceEECC
Confidence 3446788999999999999744443222 459999999887543 222334567899999
Q ss_pred CCCEEEE-EeCCCeEEEEEe--cCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCeeeEec
Q 001184 420 DGNFIGV-AFTKHLIHLYTY--QGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFE 494 (1130)
Q Consensus 420 dg~~las-~~~d~~i~vwd~--~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~~~~~ 494 (1130)
||+.|+. .+.++...||.+ .++. .. .+..+.+.+....|+|||+. +++++..++...||. ..+.....+.
T Consensus 250 DG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-l~f~s~~~g~~~Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 250 DGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS-IYFTSDRGGAPQIYRMPASGGAAQRVT 324 (427)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE-EEEEecCCCCcEEEEEECCCCceEEEe
Confidence 9998875 567777666665 4433 22 34556666778899999995 233444456667776 3444333333
Q ss_pred CCCcCEEEEeecccCCccEEEEEecCC---cEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEE
Q 001184 495 GHEAPVYSVCPHQKENIHFIFSTAVDG---KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1130)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1130)
.+.......+|+ ++|+.|+..+.++ .|.+||+.+++...... ........|+|||++|+..+.. .+...+++
T Consensus 325 ~~g~~~~~~~~S--pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~-~g~~~l~~ 399 (427)
T PRK02889 325 FTGSYNTSPRIS--PDGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQ-GGRSVLAA 399 (427)
T ss_pred cCCCCcCceEEC--CCCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEec-CCCEEEEE
Confidence 233333455664 5667887766554 69999998766443222 2234678999999999988753 23456777
Q ss_pred eeCCCCceeEEEecccCceeEEEEEcC
Q 001184 572 WNESEGALKRTYIGFRKKSAGVVQFDT 598 (1130)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1130)
.+. ++...+.+..+.. .+...+|+|
T Consensus 400 ~~~-~g~~~~~l~~~~g-~~~~p~wsp 424 (427)
T PRK02889 400 VSS-DGRIKQRLSVQGG-DVREPSWGP 424 (427)
T ss_pred EEC-CCCceEEeecCCC-CCCCCccCC
Confidence 776 4555555544322 455566766
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.4e-12 Score=134.48 Aligned_cols=252 Identities=12% Similarity=0.121 Sum_probs=163.8
Q ss_pred CEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEE-----cCCCCE
Q 001184 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW-----SPDGNF 423 (1130)
Q Consensus 349 ~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~-----spdg~~ 423 (1130)
.++...++-.|+++.+-- ...+++|+...+..... ++....+++. .-+|=+| .|+|--
T Consensus 125 ~~~~~~~~~~gd~lcFnv--g~~lyv~~~~g~~~~~~-------------pi~k~~y~gt--~P~cHdfn~~~a~~~g~d 187 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV--GRELYVYSYRGAADLSK-------------PIDKREYKGT--SPTCHDFNSFTATPKGLD 187 (636)
T ss_pred ceeeccccCCCCEEEEec--CCeEEEEEccCcchhcc-------------chhhhcccCC--CCceecccccccCCCCcc
Confidence 456666677777755433 34789999886443321 1111122222 2233333 456777
Q ss_pred EEEEeCCCeEEEEEecCCccceeeeeeec--CCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCCCcCEE
Q 001184 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDA--HVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVY 501 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~--h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~~~v~ 501 (1130)
|..|-..|.|.+.|....+ +...+.... ....|+++.|-|.+.. .++.+-.+|.+.++|.. +....+
T Consensus 188 llIGf~tGqvq~idp~~~~-~sklfne~r~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~~---------~~~~~t 256 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINFE-VSKLFNEERLINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDKE---------IVCGAT 256 (636)
T ss_pred eEEeeccCceEEecchhhH-HHHhhhhcccccccceEEEEEEeCCCc-eEEEEEecCceEEeecc---------ccccCC
Confidence 8888888999999876622 222111111 2467999999998876 57777789999999851 111222
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeE
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKR 581 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1130)
..++..-.++..+......+. .+...+..+......|...+|+|||++||+.+. ||.++|+|..+.+++.
T Consensus 257 ~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSq----DGfLRvF~fdt~eLlg 326 (636)
T KOG2394|consen 257 APSYQALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQ----DGFLRIFDFDTQELLG 326 (636)
T ss_pred CCcccccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEec----CceEEEeeccHHHHHH
Confidence 222222222233322211110 111233333334457999999999999999986 9999999999888776
Q ss_pred EEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEc
Q 001184 582 TYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN 641 (1130)
Q Consensus 582 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s 641 (1130)
.++..-+ ...|++|+|||++|++|++|.-|.||.+..++.+..-. +|...|..|+|.
T Consensus 327 ~mkSYFG-GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq--GHkSWVs~VaFD 383 (636)
T KOG2394|consen 327 VMKSYFG-GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ--GHKSWVSVVAFD 383 (636)
T ss_pred HHHhhcc-ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc--ccccceeeEeec
Confidence 6655444 78999999999999999999999999999988877655 445589999998
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=7e-12 Score=144.01 Aligned_cols=226 Identities=14% Similarity=0.114 Sum_probs=144.7
Q ss_pred eeeeccCCCCEEEEEEecCCCeEEEEEeC--cCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEE
Q 001184 340 VACTMHQGSSVVSMDFHPFHHTLLVVGCG--DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1130)
Q Consensus 340 ~~~~~~h~~~V~~v~fspdg~~llasg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 417 (1130)
......|...+.+.+|||||++++++... +..|.+||+.+++... +..+.+...+.+|
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~g~~~~~~~ 255 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VASFRGINGAPSF 255 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------eccCCCCccCceE
Confidence 33444577889999999999964444322 3469999998876542 2233344567899
Q ss_pred cCCCCEEEE-EeCCC--eEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEE-cCCCc--EEEEecCCCeee
Q 001184 418 SPDGNFIGV-AFTKH--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTC-GDDKL--IRVWDLSGRKLF 491 (1130)
Q Consensus 418 spdg~~las-~~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~-s~d~~--v~iwd~~~~~~~ 491 (1130)
||||+.|+. .+.++ .|.+||+.+++.. .+..+.......+|+|||+. ++.+ ..++. |.++|..+....
T Consensus 256 SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~iy~~dl~~g~~~ 329 (433)
T PRK04922 256 SPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQIYRVAASGGSAE 329 (433)
T ss_pred CCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCCE--EEEEECCCCCceEEEEECCCCCeE
Confidence 999998864 44555 5999999887632 24556556678999999994 4444 34555 566664443344
Q ss_pred EecCCCcCEEEEeecccCCccEEEEEecCC---cEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcE
Q 001184 492 QFEGHEAPVYSVCPHQKENIHFIFSTAVDG---KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSH 568 (1130)
Q Consensus 492 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1130)
.+..+.......+|+| +++.|+..+.++ .|.+||+.++... .+. +........|+|||++++..+.. .+...
T Consensus 330 ~lt~~g~~~~~~~~Sp--DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~-~g~~~ 404 (433)
T PRK04922 330 RLTFQGNYNARASVSP--DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATRE-GGRGV 404 (433)
T ss_pred EeecCCCCccCEEECC--CCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEec-CCceE
Confidence 4433334444567754 556777655433 5899998776544 332 22234567999999999887643 34668
Q ss_pred EEEeeCCCCceeEEEecccCceeEEEEEcC
Q 001184 569 LVEWNESEGALKRTYIGFRKKSAGVVQFDT 598 (1130)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1130)
|++++.. +...+.+..+. +.+...+|+|
T Consensus 405 L~~~~~~-g~~~~~l~~~~-g~~~~p~wsp 432 (433)
T PRK04922 405 LAAVSTD-GRVRQRLVSAD-GEVREPAWSP 432 (433)
T ss_pred EEEEECC-CCceEEcccCC-CCCCCCccCC
Confidence 9999985 44444444322 2455556665
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.5e-10 Score=117.71 Aligned_cols=345 Identities=11% Similarity=0.147 Sum_probs=207.8
Q ss_pred EEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEE
Q 001184 524 KAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRI 603 (1130)
Q Consensus 524 ~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 603 (1130)
.+|+..+......+....-++..+++||.|++|++.. ...|.+|+...+..+..+.. . .|.-+.|+|.+++|
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~-----~~~V~~~~g~~~~~l~~~~~--~-~V~~~~fSP~~kYL 86 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEH-----AAGVECWGGPSKAKLVRFRH--P-DVKYLDFSPNEKYL 86 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhh-----ccceEEccccchhheeeeec--C-CceecccCccccee
Confidence 3455444444444454666889999999999999876 45699999877765555542 2 68889999999999
Q ss_pred EEEeCC---------------CcEEEEeCCCCceeEEEeccCCCCCcc-eEEEcCCCCEEEEEeCCCcEEEEEcCCCchh
Q 001184 604 LAAGED---------------NQIKFWDMDNVNMLTSTEAEGGLPSLP-RLRFNKEGNLLVVTTADQGIKILANADGLRA 667 (1130)
Q Consensus 604 ~~~~~d---------------g~i~vwd~~~~~~~~~~~~~~~~~~i~-~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 667 (1130)
.+-+.. +.+.+||..+|..+..+.......... -+.|+-+.+++|-. -...+.|+++.....
T Consensus 87 ~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~- 164 (561)
T COG5354 87 VTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIE- 164 (561)
T ss_pred eeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccc-
Confidence 986543 349999999999998887665432234 67888888777655 345788888622210
Q ss_pred hhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeec
Q 001184 668 LRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELT 747 (1130)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~ 747 (1130)
.+ |- .
T Consensus 165 -----~~-----------------------p~---------------------------------------~-------- 169 (561)
T COG5354 165 -----EH-----------------------PF---------------------------------------K-------- 169 (561)
T ss_pred -----cC-----------------------ch---------------------------------------h--------
Confidence 00 00 0
Q ss_pred cccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceecc
Q 001184 748 EIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTND 827 (1130)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 827 (1130)
.-....|..+.++|.|+ ...+..|.... +
T Consensus 170 ----------------~lr~~gi~dFsisP~~n-------~~~la~~tPEk----------------------~------ 198 (561)
T COG5354 170 ----------------NLRPVGILDFSISPEGN-------HDELAYWTPEK----------------------L------ 198 (561)
T ss_pred ----------------hccccceeeEEecCCCC-------CceEEEEcccc----------------------C------
Confidence 00112344555555541 11122221110 0
Q ss_pred CCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEE-----------eCC
Q 001184 828 VPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIG-----------MED 896 (1130)
Q Consensus 828 ~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg-----------~~d 896 (1130)
+..+.+++|.+..+..+.+-....-.-..+.|.+ .|.+|.+- ...
T Consensus 199 -----------------------~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t~~ksnKsyfge 254 (561)
T COG5354 199 -----------------------NKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQV-LGKYLLVLVMTHTKSNKSYFGE 254 (561)
T ss_pred -----------------------CCCcEEEEEEccCCCeeeeeeeEeecccEEEEec-CCceEEEEEEEeeecccceecc
Confidence 0012233333322222221111111111223333 22211110 013
Q ss_pred CcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEe--CCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEc
Q 001184 897 STIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSG--SDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFH 974 (1130)
Q Consensus 897 g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s--~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 974 (1130)
..++|+++....+... ..-.++|...+|.|+++.+++.+ .+..+.++|+..+ .....+.. .-..+.|+
T Consensus 255 snLyl~~~~e~~i~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-----l~~~~Pe~----~rNT~~fs 324 (561)
T COG5354 255 SNLYLLRITERSIPVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-----LRFYFPEQ----KRNTIFFS 324 (561)
T ss_pred ceEEEEeeccccccee-ccccccceeeeecccCCceeEEecccccceeecccccc-----eEEecCCc----cccccccc
Confidence 4688888874433222 25578999999999998877766 5788999999874 22222222 22457899
Q ss_pred CCCcEEEE-E---cCCcEEEEECCCceeee-eeecCCCCCCCeEEEEECCCCCEEEEEe------CCCcEEEEeCCCccc
Q 001184 975 SDQVRLLV-N---HETQLAIYDGSKMECIR-QWVPQDVLSSPISSAAYSCNSQLIYATF------TDGSIGVFDADSLRL 1043 (1130)
Q Consensus 975 ~d~~~l~~-~---~d~~i~v~d~~~~~~~~-~~~~~~~~~~~v~~v~~s~dg~~l~t~~------~Dg~i~vwd~~~~~~ 1043 (1130)
|.+++++. + ..+.+-+||....-.+. .+.+. ..+-+.|||||+++.+.. .|..|.|||+.....
T Consensus 325 p~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~-----n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 325 PHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL-----NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred CcccEEEEecCCccccceEEeccCCceEEEEEeecC-----CceEeeccCCceEEEecCCCcccccCcceEEEEecCchh
Confidence 99999887 3 25789999988655444 55443 566788999999888776 378899999975543
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-11 Score=125.80 Aligned_cols=272 Identities=13% Similarity=0.170 Sum_probs=191.6
Q ss_pred CCCCEEEEEEecCCCeEEEEEe-CcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGC-GDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
...+|+.++|--|++.=+..+. .|..+...+......... .|+.. ......+.|..++.. || .|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~---------~~~l~~~~I~gl~~~-dg-~L 118 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAK---------TVSLGTKSIKGLKLA-DG-TL 118 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccc----ccccc---------ccccccccccchhhc-CC-EE
Confidence 4567888888877764344444 666777777766555432 13222 233445566666654 33 67
Q ss_pred EEEeCCCeEEEEEecCCccce-eeeeeecCCCCeeEEEEecCCCceEEEEEcCC--CcEEEEe-cCCCeeeEec------
Q 001184 425 GVAFTKHLIHLYTYQGSNDLC-QSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD--KLIRVWD-LSGRKLFQFE------ 494 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~-~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d--~~v~iwd-~~~~~~~~~~------ 494 (1130)
.+|-.+|.+.+|..+.+..-. ....+.. ...+..+.-++...+ ++++||.. +.+.||| ...+.+..-+
T Consensus 119 itc~~sG~l~~~~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~ 196 (412)
T KOG3881|consen 119 ITCVSSGNLQVRHDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDR 196 (412)
T ss_pred EEEecCCcEEEEeccCCccccccceeeec-CCceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCcc
Confidence 777889999999998543211 1112332 355777777777765 67779999 8999999 5554444322
Q ss_pred -CCCcCE--EEEeecccCCccEEEEEecCCcEEEEEccCCcce-eeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEE
Q 001184 495 -GHEAPV--YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR-VDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLV 570 (1130)
Q Consensus 495 -~h~~~v--~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1130)
+-.-+| +++.|.+......|++++.-+.+++||.+..... ..+.....+++++...|+|++++++.. .+.+.
T Consensus 197 L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~ 272 (412)
T KOG3881|consen 197 LGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLA 272 (412)
T ss_pred ccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhh
Confidence 122234 4556655544689999999999999999876544 477778889999999999999999875 88999
Q ss_pred EeeCCCCceeEE-EecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcC
Q 001184 571 EWNESEGALKRT-YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1130)
Q Consensus 571 ~wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~ 642 (1130)
.+|.++++.... +.+..+ .++.+..+|..++++++|-|+.+||+|+.+.+++...-... .++++.+.+
T Consensus 273 ~FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs---~lt~il~~~ 341 (412)
T KOG3881|consen 273 KFDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS---RLTFILLRD 341 (412)
T ss_pred eecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc---cccEEEecC
Confidence 999999998887 565444 89999999999999999999999999999977665544333 345555544
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2e-11 Score=140.59 Aligned_cols=225 Identities=14% Similarity=0.074 Sum_probs=147.4
Q ss_pred eeeccCCCCEEEEEEecCCCeEEEEEe--CcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEc
Q 001184 341 ACTMHQGSSVVSMDFHPFHHTLLVVGC--GDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1130)
Q Consensus 341 ~~~~~h~~~V~~v~fspdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 418 (1130)
.....|...+.+.+|||||++++++.. .+..|.+||+.+++... +..+.+.+.+.+||
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~~~g~~~~~~~S 254 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGNFPGMTFAPRFS 254 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eecCCCcccCcEEC
Confidence 334468889999999999997544432 24689999999886542 33455677889999
Q ss_pred CCCCEEEE-EeCCCe--EEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEc-CCC--cEEEEecCCCeeeE
Q 001184 419 PDGNFIGV-AFTKHL--IHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG-DDK--LIRVWDLSGRKLFQ 492 (1130)
Q Consensus 419 pdg~~las-~~~d~~--i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s-~d~--~v~iwd~~~~~~~~ 492 (1130)
|||+.|+. .+.++. |.+||+.++... .+..+.+.....+|+|||+. ++..+ .++ .|.+||..+.....
T Consensus 255 PDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy~~d~~g~~~~~ 328 (435)
T PRK05137 255 PDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLYVMNADGSNPRR 328 (435)
T ss_pred CCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCCeEEEEECCCCCeEE
Confidence 99998764 445554 777788877532 35556666788999999995 44443 333 67888866665666
Q ss_pred ecCCCcCEEEEeecccCCccEEEEEecC---CcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCC--c
Q 001184 493 FEGHEAPVYSVCPHQKENIHFIFSTAVD---GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGD--S 567 (1130)
Q Consensus 493 ~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~--~ 567 (1130)
+..+...+....|+| +++.|+..+.+ ..|.+||+...... .+. ....+....|+|||+.|+..+...... .
T Consensus 329 lt~~~~~~~~~~~Sp--dG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~ 404 (435)
T PRK05137 329 ISFGGGRYSTPVWSP--RGDLIAFTKQGGGQFSIGVMKPDGSGER-ILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAP 404 (435)
T ss_pred eecCCCcccCeEECC--CCCEEEEEEcCCCceEEEEEECCCCceE-ecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcc
Confidence 655555666677754 55677766543 35777887554332 222 223467889999999998876432221 4
Q ss_pred EEEEeeCCCCceeEEEecccCceeEEEEEcC
Q 001184 568 HLVEWNESEGALKRTYIGFRKKSAGVVQFDT 598 (1130)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1130)
.|+++|+..+.. +.+.. ...+...+|+|
T Consensus 405 ~L~~~dl~g~~~-~~l~~--~~~~~~p~Wsp 432 (435)
T PRK05137 405 KLYTVDLTGRNE-REVPT--PGDASDPAWSP 432 (435)
T ss_pred eEEEEECCCCce-EEccC--CCCccCcccCC
Confidence 788888866544 33332 21344455655
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-11 Score=123.09 Aligned_cols=341 Identities=13% Similarity=0.205 Sum_probs=217.2
Q ss_pred ceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEe-CCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcE
Q 001184 578 ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWD-MDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGI 656 (1130)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd-~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i 656 (1130)
..++.++|+.+ .++....-|..+-+++.++|.+++||- .+.++.-..+... ...+++++.+.++...|++|-..|++
T Consensus 15 ~ll~~~eG~~d-~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~-mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 15 ELLSKIEGSQD-DVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHY-MPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred hhhhhhcCchh-hhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhh-CCCCceEeeeeccceEEEEEEecceE
Confidence 34566777666 566666677778899999999999995 4455554444333 23478999999999999999999998
Q ss_pred EEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccc
Q 001184 657 KILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLED 736 (1130)
Q Consensus 657 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1130)
.-+.+.........+
T Consensus 93 tefs~sedfnkm~~~----------------------------------------------------------------- 107 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFL----------------------------------------------------------------- 107 (404)
T ss_pred EEEEhhhhhhhcchh-----------------------------------------------------------------
Confidence 877664432111100
Q ss_pred cCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccc
Q 001184 737 ISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHW 816 (1130)
Q Consensus 737 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w 816 (1130)
+.| ..|..++..+.|+-.-.++++.+.|..+.-.-...
T Consensus 108 -----r~~-------------------~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~------------------ 145 (404)
T KOG1409|consen 108 -----KDY-------------------LAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTES------------------ 145 (404)
T ss_pred -----hhh-------------------hhhhcceeeEEecCCceeEEEeccccceEEEeecc------------------
Confidence 001 23778888889988888899988886664321111
Q ss_pred cCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEE--ECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEE
Q 001184 817 QPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLF--NMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIG 893 (1130)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iw--d~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg 893 (1130)
|..+.... .....+++.+.-. +...|. .|.|..- ..+....+.++.+|.+.+++++|.+ ...+|.+|
T Consensus 146 ----~~~lg~Y~---~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg 215 (404)
T KOG1409|consen 146 ----GNRLGGYN---FETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSG 215 (404)
T ss_pred ----CCcccceE---eeccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEec
Confidence 11100000 0001111111111 333333 3555444 3456678889999999999999999 88999999
Q ss_pred eCCCcEEEEEeecCeE-EEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEe--------------
Q 001184 894 MEDSTIQIYNVRVDEV-KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQ-------------- 958 (1130)
Q Consensus 894 ~~dg~v~iwd~~~~~~-~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~-------------- 958 (1130)
..|..|.+||+...+- ...+.+|.+.|..+...+--+.|++++.||.|.+|+.+....+......
T Consensus 216 ~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn 295 (404)
T KOG1409|consen 216 ASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWN 295 (404)
T ss_pred cccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHH
Confidence 9999999999986543 4568899999999999988999999999999999999874433211100
Q ss_pred -----------ccCCCC---CCCeEEEEEcCCCcEEEEEcCCcEEEEECCC-----c--eeeeeeecCCCCCCCeEEEEE
Q 001184 959 -----------LPAGKL---PVGETRVQFHSDQVRLLVNHETQLAIYDGSK-----M--ECIRQWVPQDVLSSPISSAAY 1017 (1130)
Q Consensus 959 -----------~~~~~~---~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~-----~--~~~~~~~~~~~~~~~v~~v~~ 1017 (1130)
+..++- ...+...+-+....+...+..-.+|+.|.-- . ..+..+ +.....|++|.+
T Consensus 296 ~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~p---hei~tgItamhl 372 (404)
T KOG1409|consen 296 FRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIP---HEIKTGITAMHL 372 (404)
T ss_pred HHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccc---cccccceeEEEh
Confidence 000000 0111112222222222223333455544321 1 112222 122458999999
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCC
Q 001184 1018 SCNSQLIYATFTDGSIGVFDADS 1040 (1130)
Q Consensus 1018 s~dg~~l~t~~~Dg~i~vwd~~~ 1040 (1130)
-.+-.+|+|++.|..|+|||+..
T Consensus 373 qetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 373 QETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred hhhccceeecCCceEEEEEechh
Confidence 99999999999999999999863
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.9e-11 Score=125.26 Aligned_cols=278 Identities=13% Similarity=0.181 Sum_probs=181.4
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 426 (1130)
...++..++|++|+ ++|.+ .+..|+|++..++..+.. .....+.++.|||-|.+|.+
T Consensus 34 ~~~~~v~~~S~~G~-lfA~~-~~~~v~i~~~~~~~~~lt---------------------~~~~~~~~L~fSP~g~yL~T 90 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGR-LFAYS-DNQVVKVFEIATLKVVLC---------------------VELKKTYDLLFSPKGNYLLT 90 (566)
T ss_pred CCcceeEEEcCCCc-EEEEE-cCCeEEEEEccCCcEEEE---------------------eccceeeeeeeccccccccc
Confidence 34578889999998 46654 567999999988864321 11226899999999999976
Q ss_pred E-----eCC-----CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCC
Q 001184 427 A-----FTK-----HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGH 496 (1130)
Q Consensus 427 ~-----~~d-----~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h 496 (1130)
- ..+ ..+.+|+++++.... .+......-++..|+.|.. ++.=-..+.+++|+..+-....-.-|
T Consensus 91 ~e~~~i~~~~~~~~pn~~v~~vet~~~~s---~~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~~kl~ 164 (566)
T KOG2315|consen 91 WEPWAIYGPKNASNPNVLVYNVETGVQRS---QIQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQHKLS 164 (566)
T ss_pred ccccccccCCCCCCCceeeeeeccceehh---heehhhhcCcccccccchh---hhhhhhcceEEEEecCCccceeeeee
Confidence 2 122 347799999943222 2222222237899999987 33333345788888333222222234
Q ss_pred CcCEEEEeecccCCccEEEEE-----ecCCcEEEEE--------------------------------------------
Q 001184 497 EAPVYSVCPHQKENIHFIFST-----AVDGKIKAWL-------------------------------------------- 527 (1130)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~-----s~dg~i~vwd-------------------------------------------- 527 (1130)
...|..+.++|.+....+++- |.-+.|++|.
T Consensus 165 ~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn 244 (566)
T KOG2315|consen 165 VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTN 244 (566)
T ss_pred ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCC
Confidence 555666666555333333321 2223344443
Q ss_pred -------------ccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEE
Q 001184 528 -------------YDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVV 594 (1130)
Q Consensus 528 -------------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~ 594 (1130)
++.....+.+ ...++|.++.|+|+|+.++++.. -.-..+.++|++ +.++..+. .++-+++
T Consensus 245 ~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyG--fMPAkvtifnlr-~~~v~df~---egpRN~~ 317 (566)
T KOG2315|consen 245 ASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYG--FMPAKVTIFNLR-GKPVFDFP---EGPRNTA 317 (566)
T ss_pred ccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEe--cccceEEEEcCC-CCEeEeCC---CCCccce
Confidence 2211111111 23568999999999998887642 235688999975 55555553 2256678
Q ss_pred EEcCCCCEEEEEeC---CCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeC------CCcEEEEEcCCC
Q 001184 595 QFDTTRNRILAAGE---DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTA------DQGIKILANADG 664 (1130)
Q Consensus 595 ~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~------dg~i~iw~~~~~ 664 (1130)
-|+|.|++++.+|. .|.|-|||+.+.+++..+.... -+-+.|+|||+++++++. |+.++||+....
T Consensus 318 ~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~----tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 318 FFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN----TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred EECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC----ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 89999999998775 4889999999988888877553 477899999999999875 688999998554
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.3e-09 Score=119.04 Aligned_cols=206 Identities=16% Similarity=0.229 Sum_probs=134.3
Q ss_pred ceeEEEEecCCCEEEEEe--CCeEEEEECCC-ceeEEE---Ee----------CCCCCeEEEEEeCCCCcEEEEEe-CCC
Q 001184 835 VVPCVALSKNDSYVMSAG--GGKVSLFNMMN-FKVMTT---FM----------SPPPASTFLAFHPQDNNIIAIGM-EDS 897 (1130)
Q Consensus 835 ~i~~l~~s~dg~~la~~~--dg~i~iwd~~~-~~~~~~---~~----------~~~~~i~~l~~sp~~~~~lasg~-~dg 897 (1130)
....++++|++++|+++. +|.|.++++.. +..... +. .......++.|+| +++++++.+ ...
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D 166 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGAD 166 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTT
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCC
Confidence 345688888888888886 68888888876 333222 11 1234578999999 777666654 345
Q ss_pred cEEEEEeecCe--EE--EEEe-cCCCCeeEEEEccCCCeEEEEeC-CCcEEEEECC--CCcccceeeEecc-CCCC-CCC
Q 001184 898 TIQIYNVRVDE--VK--TKLK-GHQKHITGLAFSTNLNILVSSGS-DAQLIFWNTD--TWEKRKSIAIQLP-AGKL-PVG 967 (1130)
Q Consensus 898 ~v~iwd~~~~~--~~--~~l~-~h~~~V~~l~~s~dg~~L~s~s~-Dg~i~vwd~~--~~~~~~~~~~~~~-~~~~-~~~ 967 (1130)
.|++|++.... +. ..+. .....-..++|+||++++....+ +++|.++++. .+........... .... ...
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 246 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA 246 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence 79999998654 32 2232 23344688999999998877665 7789999998 3322222112211 1111 136
Q ss_pred eEEEEEcCCCcEEEEE--cCCcEEEEECC--Cc--eeeeeeecCCCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEeC--
Q 001184 968 ETRVQFHSDQVRLLVN--HETQLAIYDGS--KM--ECIRQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDA-- 1038 (1130)
Q Consensus 968 v~~~~~s~d~~~l~~~--~d~~i~v~d~~--~~--~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~-~Dg~i~vwd~-- 1038 (1130)
...++++|||++|.++ ..+.|.+|++. ++ +.+..+... ......++++|||++|+++. .++.|.+|++
T Consensus 247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~---G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG---GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES---SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC---CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 8899999999999986 46789999993 23 334444433 34578999999999999888 4578999966
Q ss_pred CCcccc
Q 001184 1039 DSLRLR 1044 (1130)
Q Consensus 1039 ~~~~~~ 1044 (1130)
++|.+.
T Consensus 324 ~tG~l~ 329 (345)
T PF10282_consen 324 DTGKLT 329 (345)
T ss_dssp TTTEEE
T ss_pred CCCcEE
Confidence 566654
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-09 Score=119.21 Aligned_cols=522 Identities=12% Similarity=0.112 Sum_probs=303.7
Q ss_pred ec-cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCC
Q 001184 343 TM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1130)
Q Consensus 343 ~~-~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 421 (1130)
++ +|...|.-+.|..+.+. |.+...+|.|.||-+..|..... .+-....+.|.+++|..||
T Consensus 66 tLeGH~~sV~vvTWNe~~QK-LTtSDt~GlIiVWmlykgsW~EE-----------------MiNnRnKSvV~SmsWn~dG 127 (1189)
T KOG2041|consen 66 TLEGHNASVMVVTWNENNQK-LTTSDTSGLIIVWMLYKGSWCEE-----------------MINNRNKSVVVSMSWNLDG 127 (1189)
T ss_pred hhccCcceEEEEEecccccc-ccccCCCceEEEEeeecccHHHH-----------------HhhCcCccEEEEEEEcCCC
Confidence 44 59999999999999986 88888999999999988765421 1223456789999999999
Q ss_pred CEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeE---------
Q 001184 422 NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQ--------- 492 (1130)
Q Consensus 422 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~--------- 492 (1130)
..++....||.|.|=.+++.+.... .+++. -...+.|++|.+ .++.+-..|.+.++|..|.....
T Consensus 128 ~kIcIvYeDGavIVGsvdGNRIwgK--eLkg~--~l~hv~ws~D~~--~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~ 201 (1189)
T KOG2041|consen 128 TKICIVYEDGAVIVGSVDGNRIWGK--ELKGQ--LLAHVLWSEDLE--QALFKKANGETHLYDNQGNFERKLEKDCEVNG 201 (1189)
T ss_pred cEEEEEEccCCEEEEeeccceecch--hcchh--eccceeecccHH--HHHhhhcCCcEEEecccccHHHhhhhceEEee
Confidence 9999999999999988877543221 22222 245789999999 56777778999999955542211
Q ss_pred ---ecCCCcCEEEEeecc------cCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecC
Q 001184 493 ---FEGHEAPVYSVCPHQ------KENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1130)
Q Consensus 493 ---~~~h~~~v~~~~~~~------~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1130)
+......|..+.|.. .++...|+.+-.+|.+.+..-++......+... -.+....|+++|..|+++|.+.
T Consensus 202 tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg-m~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 202 TGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG-MKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred eeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc-cEeecceecCCCcEEEEccCcc
Confidence 111222355555532 246678999999999998877666555555433 6788999999999999998643
Q ss_pred CC-----CcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceE
Q 001184 564 EG-----DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1130)
Q Consensus 564 ~~-----~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v 638 (1130)
+. .+.|+.|. .-|+.+.+++.. +..++.++|-..|-+++.+ .|+.|++=+++..-.-..+.. .|.-+
T Consensus 281 da~~~~d~n~v~Fys-p~G~i~gtlkvp-g~~It~lsWEg~gLriA~A-vdsfiyfanIRP~ykWgy~e~-----TvVy~ 352 (1189)
T KOG2041|consen 281 DADEPTDSNKVHFYS-PYGHIVGTLKVP-GSCITGLSWEGTGLRIAIA-VDSFIYFANIRPEYKWGYIEE-----TVVYV 352 (1189)
T ss_pred cccCccccceEEEec-cchhheEEEecC-CceeeeeEEcCCceEEEEE-ecceEEEEeecccceEEEeee-----EEEEE
Confidence 32 23666666 457778888764 4489999998776565554 468888877765432222210 01100
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccc
Q 001184 639 RFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTIL 718 (1130)
Q Consensus 639 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~ 718 (1130)
.--++. ..-.|.+||..++...++...+...- +++.+
T Consensus 353 y~~~e~-------p~y~i~Fwdtk~nek~vK~V~~~~~~-----------------a~~~e------------------- 389 (1189)
T KOG2041|consen 353 YQKEEL-------PQYGIMFWDTKTNEKTVKTVTHFENM-----------------AFYRE------------------- 389 (1189)
T ss_pred EccCCC-------cceEEEEEecccChhhhhhhcceeeh-----------------heecc-------------------
Confidence 000111 11246789988876665555432211 11111
Q ss_pred cCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCC-----CCCccceEEEEEeccCCeEEEeeeCCeEEe
Q 001184 719 NGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPES-----TDSASKVARLLYTNSGIGILALWSNGVQKL 793 (1130)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~l~~s~~g~~l~~~~~dg~i~i 793 (1130)
--.++.-..++.+.-+.. .........+.+-+. ...-..|.-.-..-++..++.++.+ .+.+
T Consensus 390 ----------hCvL~~~~d~~~i~e~s~--le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~i 456 (1189)
T KOG2041|consen 390 ----------HCVLINRQDDGVIPEYST--LENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFI 456 (1189)
T ss_pred ----------cEEEEeccccCCCcchhh--hhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccc-cEEE
Confidence 000111111222222210 000000000000000 0011222222333345555555554 5667
Q ss_pred eecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeC
Q 001184 794 WKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMS 872 (1130)
Q Consensus 794 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~ 872 (1130)
|.+...+....-. +.. .+...-..+.-.|. |+ |+++ +.. .+++.+
T Consensus 457 Why~~pK~~s~l~--------------~~k-------~rkegr~h~Ddtp~------ga~d~~l---~ys----~kt~~G 502 (1189)
T KOG2041|consen 457 WHYVLPKFNSVLA--------------GVK-------IRKEGRFHGDDTPE------GAQDRTL---EYS----TKTLLG 502 (1189)
T ss_pred EEEeccchhhhhh--------------hhh-------hcccccccCCCCcc------chhhcee---ecc----ceeecc
Confidence 7654432211000 000 00000001111111 11 2221 111 345667
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCccc
Q 001184 873 PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKR 952 (1130)
Q Consensus 873 ~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~ 952 (1130)
..++|.+++.+. ++|.++-..|.|+-|.+....+..... -...|..++.+-+..+|+....-|.+.+.|++-....
T Consensus 503 ~~DpICAl~~sd---k~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g 578 (1189)
T KOG2041|consen 503 SKDPICALCISD---KFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDG 578 (1189)
T ss_pred CCCcceeeeecc---eEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhhhhceeeeeecccccCc
Confidence 788999999864 789999999999999999887766654 3456889999888889999988899999988731111
Q ss_pred ceeeEeccCCCCCCCeEEEEEcCCCcEEEE-EcCCcEEEEEC
Q 001184 953 KSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDG 993 (1130)
Q Consensus 953 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~ 993 (1130)
..... +. ......|..+.|..|+..|++ -....++|++-
T Consensus 579 ~ql~~-~~-~~errDVWd~~Wa~dNp~llAlmeKtrmyifrg 618 (1189)
T KOG2041|consen 579 DQLKL-IY-TSERRDVWDYEWAQDNPNLLALMEKTRMYIFRG 618 (1189)
T ss_pred ceeee-ee-hhhhhhhhhhhhccCCchHHhhhhhceEEEecC
Confidence 11111 11 111145667777777665555 33444556553
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.1e-11 Score=121.29 Aligned_cols=245 Identities=10% Similarity=0.157 Sum_probs=179.2
Q ss_pred CCccEEEEEEcCCCC--EEEEEeCCCeEEEEEecCCccceee---eeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001184 408 SSISVSRVAWSPDGN--FIGVAFTKHLIHLYTYQGSNDLCQS---LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRV 482 (1130)
Q Consensus 408 h~~~V~~v~~spdg~--~las~~~d~~i~vwd~~~~~~~~~~---~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~i 482 (1130)
....|++++|--|++ .|..++.|..+..+.+......... .......++|..++.. || .|++|-.+|.+.+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg---~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG---TLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC---EEEEEecCCcEEE
Confidence 345788888887655 4555556777777777665443321 1233445667777765 34 5899999999999
Q ss_pred EecC-----CCeeeEecCCCcCEEEEeecccCCccEEEEEecC--CcEEEEEccCCcceeeecCC---------CccEEE
Q 001184 483 WDLS-----GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD--GKIKAWLYDNVGSRVDYDAP---------GLWCTT 546 (1130)
Q Consensus 483 wd~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d--g~i~vwd~~~~~~~~~~~~~---------~~~v~~ 546 (1130)
|... ...+..+..+ ..+..+.-++ ....++++|+.. ..+.+||++..+.++.-... .-+++.
T Consensus 130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~-~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTD-TDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred EeccCCccccccceeeecC-CceeeeccCC-CCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence 9933 3344444433 3444444333 233577789998 88999999988665532221 126788
Q ss_pred EEEecC--CCeEEEeeecCCCCcEEEEeeCCCCc-eeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 001184 547 MLYSAD--GSRLFSCGTSKEGDSHLVEWNESEGA-LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNML 623 (1130)
Q Consensus 547 ~~~s~~--~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 623 (1130)
+.|-+. ...|++++. .+++++||.+.++ ++..+.-. ..++.++...|+++++++|..-|.+..||.+.+...
T Consensus 208 i~Fl~g~~~~~fat~T~----~hqvR~YDt~~qRRPV~~fd~~-E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~ 282 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITR----YHQVRLYDTRHQRRPVAQFDFL-ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL 282 (412)
T ss_pred ceecCCCCCceEEEEec----ceeEEEecCcccCcceeEeccc-cCcceeeeecCCCcEEEEecccchhheecccCceee
Confidence 999987 888999976 8999999998654 55666543 448999999999999999999999999999999887
Q ss_pred EE-EeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 001184 624 TS-TEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGL 665 (1130)
Q Consensus 624 ~~-~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 665 (1130)
.. +....+ .|.++..+|.++++++++-|+.+||+|+.+..
T Consensus 283 g~~~kg~tG--sirsih~hp~~~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 283 GCGLKGITG--SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred ccccCCccC--CcceEEEcCCCceEEeeccceeEEEeecccch
Confidence 66 554444 79999999999999999999999999998853
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-09 Score=110.84 Aligned_cols=281 Identities=12% Similarity=0.117 Sum_probs=183.1
Q ss_pred CCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeC---CeEEeeecCCCCCCCCcccccccccc
Q 001184 738 SDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSN---GVQKLWKWNRTEQNPSGKATAAVAPQ 814 (1130)
Q Consensus 738 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~ 814 (1130)
++.|.+|++++.... +..+......+..+-++++|+++.|.++..+ |.+..|.+
T Consensus 15 s~gI~v~~ld~~~g~-----l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~i------------------ 71 (346)
T COG2706 15 SQGIYVFNLDTKTGE-----LSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRI------------------ 71 (346)
T ss_pred CCceEEEEEeCcccc-----cchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEE------------------
Confidence 467889998843221 1111113366778889999999999988765 55555543
Q ss_pred cccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe--CCeEEEEECCC-ceeEEE--EeCCCCC----------eEE
Q 001184 815 HWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMN-FKVMTT--FMSPPPA----------STF 879 (1130)
Q Consensus 815 ~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~-~~~~~~--~~~~~~~----------i~~ 879 (1130)
|..+|++...........+-..++++++|++++++. .|.|.++-++. |.+... ...|.+. +..
T Consensus 72 --D~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~ 149 (346)
T COG2706 72 --DPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS 149 (346)
T ss_pred --cCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence 444444332222112344448899999999999998 68999999865 333221 1223333 888
Q ss_pred EEEeCCCCcEEEEEeC-CCcEEEEEeecCeEEEEEe---cCCCCeeEEEEccCCCeEEEEeC-CCcEEEEECCCCccc-c
Q 001184 880 LAFHPQDNNIIAIGME-DSTIQIYNVRVDEVKTKLK---GHQKHITGLAFSTNLNILVSSGS-DAQLIFWNTDTWEKR-K 953 (1130)
Q Consensus 880 l~~sp~~~~~lasg~~-dg~v~iwd~~~~~~~~~l~---~h~~~V~~l~~s~dg~~L~s~s~-Dg~i~vwd~~~~~~~-~ 953 (1130)
..+.| ++++|++.+- --.|.+|++..|++...-. .....-..|+|+|++++.....+ +++|.+|..+..... .
T Consensus 150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~ 228 (346)
T COG2706 150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE 228 (346)
T ss_pred eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence 99999 7877776642 2469999999876543211 22334678999999999887776 899999999984211 1
Q ss_pred ee-eE-eccC-CCCCCCeEEEEEcCCCcEEEEEc--CCcEEEEECCCc-eeeeeeecCCCCCCCeEEEEECCCCCEEEEE
Q 001184 954 SI-AI-QLPA-GKLPVGETRVQFHSDQVRLLVNH--ETQLAIYDGSKM-ECIRQWVPQDVLSSPISSAAYSCNSQLIYAT 1027 (1130)
Q Consensus 954 ~~-~~-~~~~-~~~~~~v~~~~~s~d~~~l~~~~--d~~i~v~d~~~~-~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~ 1027 (1130)
.. .. .++. .........|..++||++|.+++ .+.|.+|.+... ..+........+...-....|+++|++|+++
T Consensus 229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence 11 11 1111 12236788999999999999975 346888887632 2233332222334556889999999999999
Q ss_pred eCC-CcEEEEeCC--Ccccc
Q 001184 1028 FTD-GSIGVFDAD--SLRLR 1044 (1130)
Q Consensus 1028 ~~D-g~i~vwd~~--~~~~~ 1044 (1130)
.++ ..|.||..+ +|++-
T Consensus 309 ~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 309 NQKSDNITVFERDKETGRLT 328 (346)
T ss_pred ccCCCcEEEEEEcCCCceEE
Confidence 965 468888554 55543
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.7e-10 Score=119.89 Aligned_cols=353 Identities=13% Similarity=0.145 Sum_probs=208.9
Q ss_pred cEEEEEccCCccee-eecC--CCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcC
Q 001184 522 KIKAWLYDNVGSRV-DYDA--PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT 598 (1130)
Q Consensus 522 ~i~vwd~~~~~~~~-~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1130)
.+.+|+........ .+.. ...+++..+++++|++++.+. +..+.|++..++..+.+... . .+..+.|+|
T Consensus 12 ~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~--~-~~~~L~fSP 83 (566)
T KOG2315|consen 12 GFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVEL--K-KTYDLLFSP 83 (566)
T ss_pred eeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEecc--c-eeeeeeecc
Confidence 45566554322222 2222 244578899999999999986 67899999888865444443 2 577899999
Q ss_pred CCCEEEEE-----eC-----CCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhh
Q 001184 599 TRNRILAA-----GE-----DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRAL 668 (1130)
Q Consensus 599 ~~~~l~~~-----~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 668 (1130)
.++++.+- .. .-.+.+|++.++.....+...... -.+..|++|..+.+ --..+.+.+|+..+-....
T Consensus 84 ~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~--~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~ 160 (566)
T KOG2315|consen 84 KGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQN--GWVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQ 160 (566)
T ss_pred cccccccccccccccCCCCCCCceeeeeeccceehhheehhhhc--Ccccccccchhhhh-hhhcceEEEEecCCcccee
Confidence 99988762 11 234789999996665555544332 25788988876443 3345688999986632221
Q ss_pred hhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeecc
Q 001184 669 RAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTE 748 (1130)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~ 748 (1130)
..+.. ..+....+||. +....-.+ -.--..+....+++|....
T Consensus 161 ~kl~~---------------~~i~~f~lSpg-----------p~~~~vAv-----------yvPe~kGaPa~vri~~~~~ 203 (566)
T KOG2315|consen 161 HKLSV---------------SGITMLSLSPG-----------PEPPFVAV-----------YVPEKKGAPASVRIYKYPE 203 (566)
T ss_pred eeeec---------------cceeeEEecCC-----------CCCceEEE-----------EccCCCCCCcEEEEecccc
Confidence 11111 11111233332 00000000 0001223335666776652
Q ss_pred cc--CCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceec
Q 001184 749 IV--DPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTN 826 (1130)
Q Consensus 749 ~~--~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 826 (1130)
.. .....+. .....=..+.|++-|..|++.... |++....+- ....++.+.+++ |.....
T Consensus 204 ~~~~~~~a~ks-------FFkadkvqm~WN~~gt~LLvLast------dVDktn~SY----YGEq~Lyll~t~-g~s~~V 265 (566)
T KOG2315|consen 204 EGQHQPVANKS-------FFKADKVQMKWNKLGTALLVLAST------DVDKTNASY----YGEQTLYLLATQ-GESVSV 265 (566)
T ss_pred ccccchhhhcc-------ccccceeEEEeccCCceEEEEEEE------eecCCCccc----cccceEEEEEec-CceEEE
Confidence 11 1111111 122233456777777655543321 010000000 001122233333 322222
Q ss_pred cCCCCCCCceeEEEEecCCCEEEEEe---CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCC---CcEE
Q 001184 827 DVPENAEDVVPCVALSKNDSYVMSAG---GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED---STIQ 900 (1130)
Q Consensus 827 ~~~~~~~~~i~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~d---g~v~ 900 (1130)
.+ ...++|.++.|+++++-+++.. --++.|||++. ..+..+ ..++-+++-|+| .|++|+.++-+ |.|.
T Consensus 266 ~L--~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mE 339 (566)
T KOG2315|consen 266 PL--LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDME 339 (566)
T ss_pred ec--CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceE
Confidence 23 3588999999999998887765 47899999864 344333 467788999999 78888877654 7899
Q ss_pred EEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeC------CCcEEEEECCC
Q 001184 901 IYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGS------DAQLIFWNTDT 948 (1130)
Q Consensus 901 iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~------Dg~i~vwd~~~ 948 (1130)
|||+.+.+++..+..-. -+-..|+|||+++++++. |..++||+...
T Consensus 340 vwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 340 VWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred EEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 99999999888887543 345799999999999876 77899999876
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.7e-09 Score=117.30 Aligned_cols=292 Identities=13% Similarity=0.189 Sum_probs=175.9
Q ss_pred EEEeeecCCCCcEEEEeeC--CCCceeEEEecccCceeEEEEEcCCCCEEEEEeC----CCcEEEEeCCCC--ce--eEE
Q 001184 556 LFSCGTSKEGDSHLVEWNE--SEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGE----DNQIKFWDMDNV--NM--LTS 625 (1130)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~vwd~~~~--~~--~~~ 625 (1130)
+++++......+.|++|++ .++++...-..........++++|++++|+++.+ ++.|..|++... ++ +..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 3444443223467777776 5555433222112224556889999999999876 568999987764 33 333
Q ss_pred EeccCCCCCcceEEEcCCCCEEEEEe-CCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeecccccccccc
Q 001184 626 TEAEGGLPSLPRLRFNKEGNLLVVTT-ADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAE 704 (1130)
Q Consensus 626 ~~~~~~~~~i~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~ 704 (1130)
....+. ....++++|++++|+++. .+|.+.++++................ ...|+
T Consensus 82 ~~~~g~--~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~-----------------g~g~~----- 137 (345)
T PF10282_consen 82 VPSGGS--SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHE-----------------GSGPN----- 137 (345)
T ss_dssp EEESSS--CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESE-----------------EEESS-----
T ss_pred eccCCC--CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccC-----------------CCCCc-----
Confidence 332222 457899999999999886 48999999987641111110000000 00000
Q ss_pred ccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEE
Q 001184 705 RVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILA 784 (1130)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~ 784 (1130)
+ .........++.++|+|+++++
T Consensus 138 --------------------------------------------------------~-~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 138 --------------------------------------------------------P-DRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp --------------------------------------------------------T-TTTSSTCEEEEEE-TTSSEEEE
T ss_pred --------------------------------------------------------c-cccccccceeEEECCCCCEEEE
Confidence 0 0113345678999999998888
Q ss_pred eee-CCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe--CCeEEEEEC
Q 001184 785 LWS-NGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNM 861 (1130)
Q Consensus 785 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~iwd~ 861 (1130)
... ...|.+|++......... .....+ ......+.++|+||++++.+.. +++|.++++
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~-----------------~~~~~~--~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~ 221 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTP-----------------VDSIKV--PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDY 221 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEE-----------------EEEEEC--STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred EecCCCEEEEEEEeCCCceEEE-----------------eecccc--ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEee
Confidence 754 467888876543211000 000011 3466788999999999998877 788999998
Q ss_pred C--Cce--eEEEEeCC------CCCeEEEEEeCCCCcEEEEEe-CCCcEEEEEee--cC--eEEEEEecCCCCeeEEEEc
Q 001184 862 M--NFK--VMTTFMSP------PPASTFLAFHPQDNNIIAIGM-EDSTIQIYNVR--VD--EVKTKLKGHQKHITGLAFS 926 (1130)
Q Consensus 862 ~--~~~--~~~~~~~~------~~~i~~l~~sp~~~~~lasg~-~dg~v~iwd~~--~~--~~~~~l~~h~~~V~~l~~s 926 (1130)
. ++. .+...... ......++++| |+++|+++. .+++|.+|++. ++ +.+..+.........++++
T Consensus 222 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp-dg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s 300 (345)
T PF10282_consen 222 DPSDGSLTEIQTISTLPEGFTGENAPAEIAISP-DGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFS 300 (345)
T ss_dssp ETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T-TSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-
T ss_pred cccCCceeEEEEeeeccccccccCCceeEEEec-CCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEe
Confidence 7 443 23333211 12578899999 677666554 56789999994 34 3344444334447899999
Q ss_pred cCCCeEEEEeC-CCcEEEEECCC
Q 001184 927 TNLNILVSSGS-DAQLIFWNTDT 948 (1130)
Q Consensus 927 ~dg~~L~s~s~-Dg~i~vwd~~~ 948 (1130)
|+|++|+++.. ++.|.+|+++.
T Consensus 301 ~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 301 PDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEEET
T ss_pred CCCCEEEEEecCCCeEEEEEEeC
Confidence 99999998875 56899998753
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.5e-10 Score=116.74 Aligned_cols=327 Identities=12% Similarity=0.211 Sum_probs=198.3
Q ss_pred EEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEe-----------CCCcE
Q 001184 544 CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG-----------EDNQI 612 (1130)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------~dg~i 612 (1130)
-+-+.|||-|.||++-. ..-|.+|--.+...++.|. |. .+.-+.|||..++|++-+ +...+
T Consensus 213 etyv~wSP~GTYL~t~H-----k~GI~lWGG~~f~r~~RF~--Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l 284 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFH-----KQGIALWGGESFDRIQRFY--HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQL 284 (698)
T ss_pred eeeEEecCCceEEEEEe-----ccceeeecCccHHHHHhcc--CC-CceeeecCCccceEEEecCCccccCcccCCCceE
Confidence 45689999999999987 4558999877766666665 22 588899999999999954 22579
Q ss_pred EEEeCCCCceeEEEeccCCCCC-cceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccc
Q 001184 613 KFWDMDNVNMLTSTEAEGGLPS-LPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSA 691 (1130)
Q Consensus 613 ~vwd~~~~~~~~~~~~~~~~~~-i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1130)
+|||+.+|.....+........ -.-+.||.|++++|.... ..|.||+...- ..+...
T Consensus 285 ~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf----~lld~K----------------- 342 (698)
T KOG2314|consen 285 IIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSF----MLLDKK----------------- 342 (698)
T ss_pred EEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCce----eeeccc-----------------
Confidence 9999999998888776432222 345689999999998776 47888875331 000000
Q ss_pred eeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceE
Q 001184 692 VVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVA 771 (1130)
Q Consensus 692 ~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~ 771 (1130)
.-....|.
T Consensus 343 ------------------------------------------------------------------------slki~gIr 350 (698)
T KOG2314|consen 343 ------------------------------------------------------------------------SLKISGIR 350 (698)
T ss_pred ------------------------------------------------------------------------ccCCcccc
Confidence 00223455
Q ss_pred EEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEE
Q 001184 772 RLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSA 851 (1130)
Q Consensus 772 ~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~ 851 (1130)
.+.|+|.+..|+. |. +.+.. ..
T Consensus 351 ~FswsP~~~llAY---------wt----------------------pe~~~---------~p------------------ 372 (698)
T KOG2314|consen 351 DFSWSPTSNLLAY---------WT----------------------PETNN---------IP------------------ 372 (698)
T ss_pred CcccCCCcceEEE---------Ec----------------------ccccC---------Cc------------------
Confidence 5666666543332 21 11000 00
Q ss_pred eCCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEE----------EeCCCcEEEEEeecCeE-EEEEecCCCCe
Q 001184 852 GGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAI----------GMEDSTIQIYNVRVDEV-KTKLKGHQKHI 920 (1130)
Q Consensus 852 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~las----------g~~dg~v~iwd~~~~~~-~~~l~~h~~~V 920 (1130)
..+.+..+.+++.+++-..+.-.-..|.|-. +|.+|++ .+.-..+.|+.+..... +..+ .-...|
T Consensus 373 --arvtL~evPs~~~iRt~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-elke~v 448 (698)
T KOG2314|consen 373 --ARVTLMEVPSKREIRTKNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-ELKESV 448 (698)
T ss_pred --ceEEEEecCccceeeeccceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee-ecchhe
Confidence 1122222223333322222221112233333 3333332 22223466777765432 2222 234678
Q ss_pred eEEEEccCCCeEEEEeCC---CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE----EcCCcEEEEEC
Q 001184 921 TGLAFSTNLNILVSSGSD---AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV----NHETQLAIYDG 993 (1130)
Q Consensus 921 ~~l~~s~dg~~L~s~s~D---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~----~~d~~i~v~d~ 993 (1130)
...+|-|.|+.+++.+.. .++.+|.+++..........+.. .....+.|+|.|+++++ +..+.+..+|+
T Consensus 449 i~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk----~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~ 524 (698)
T KOG2314|consen 449 IAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK----KFANTVFWSPKGRFVVVAALVSRRGDLEFYDT 524 (698)
T ss_pred eeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc----cccceEEEcCCCcEEEEEEecccccceEEEec
Confidence 999999999988876653 57899988852221111111111 45678999999999987 45889999999
Q ss_pred CCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeC------CCcEEEEeCCCc
Q 001184 994 SKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFT------DGSIGVFDADSL 1041 (1130)
Q Consensus 994 ~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~------Dg~i~vwd~~~~ 1041 (1130)
.-..+...-.+. -...+.+.|.|.|+|++|++. |.-.++|+....
T Consensus 525 ~~a~~k~~~~~e---h~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 525 DYADLKDTASPE---HFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred chhhhhhccCcc---ccccccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence 853333322222 135678999999999999985 556788888744
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.3e-09 Score=113.62 Aligned_cols=202 Identities=14% Similarity=0.166 Sum_probs=130.0
Q ss_pred eEEEEecCCCEEEEEe---CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeec-CeEE-E
Q 001184 837 PCVALSKNDSYVMSAG---GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV-DEVK-T 911 (1130)
Q Consensus 837 ~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~-~~~~-~ 911 (1130)
..++++|||+++.+.. +..|.+.|+.+++.+.++....+ ..-...++ +..+ +-+.||......+.+ ++.. .
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-~~vy~t~e-~~~~--~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-YHIFPTAN-DTFF--MHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-cEEEEecC-CccE--EEeecCceEEEEecCCCceEEe
Confidence 3578888998888765 57899999999998888875331 22222222 2222 122344444333321 2211 1
Q ss_pred ---EEecCCCCee-EEEEcc-CCCeEEEEeCCCcEEEEECCCCcccceeeEeccC------CCCCCCeEEEEEcCCCcEE
Q 001184 912 ---KLKGHQKHIT-GLAFST-NLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPA------GKLPVGETRVQFHSDQVRL 980 (1130)
Q Consensus 912 ---~l~~h~~~V~-~l~~s~-dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~------~~~~~~v~~~~~s~d~~~l 980 (1130)
.+.+-..++. .-.|++ ||+++..... |+|.+-|+...+........... +-.+....-++++++++.+
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 1111001110 014456 8887777666 99999997664433333222211 2233555569999999988
Q ss_pred EE-Ec----------CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCC-EEEEEe-CCCcEEEEeCCCccccccc
Q 001184 981 LV-NH----------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQ-LIYATF-TDGSIGVFDADSLRLRCRI 1047 (1130)
Q Consensus 981 ~~-~~----------d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~t~~-~Dg~i~vwd~~~~~~~~~~ 1047 (1130)
.+ .+ .+.|.++|..+++.+..+... ..+..+++||||+ +|++.. .++.|.|.|..+++.+..+
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG----~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG----HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC----CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 87 32 257999999999999998764 5899999999999 888777 5788999999999988887
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.1e-10 Score=129.07 Aligned_cols=223 Identities=15% Similarity=0.107 Sum_probs=140.2
Q ss_pred ecCCCccEEEEEEcCCCCEEEEEeCC---CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCc--
Q 001184 405 VKDSSISVSRVAWSPDGNFIGVAFTK---HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL-- 479 (1130)
Q Consensus 405 ~~~h~~~V~~v~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~-- 479 (1130)
+..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++... +....+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 34556788999999999999887543 268899998876322 2222333457899999996 3445566665
Q ss_pred EEEEecCCCeeeEecCCCcCEEEEeecccCCccEEEEEe-cCCc--EEEEEccCCcceeeecCCCccEEEEEEecCCCeE
Q 001184 480 IRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA-VDGK--IKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRL 556 (1130)
Q Consensus 480 v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1130)
|.+||..+..+..+..+.......+|++ |++.|+..+ .++. |.++|+.+++.. .+..........+|+|||+++
T Consensus 288 Iy~~dl~tg~~~~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~~~SpDG~~l 364 (448)
T PRK04792 288 IYVVDIATKALTRITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQNLGGSITPDGRSM 364 (448)
T ss_pred EEEEECCCCCeEECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCEE-EEecCCCCCcCeeECCCCCEE
Confidence 7777855555666666666667777865 456565544 3444 555566554432 222233334457899999999
Q ss_pred EEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCC-C--cEEEEeCCCCceeEEEeccCCCC
Q 001184 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED-N--QIKFWDMDNVNMLTSTEAEGGLP 633 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~~~~~~ 633 (1130)
+..+.. .+...|.++|+.+++... +.... ......|+|+|+.|+..+.+ + .+++++. +|.....+....+
T Consensus 365 ~~~~~~-~g~~~I~~~dl~~g~~~~-lt~~~--~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g-- 437 (448)
T PRK04792 365 IMVNRT-NGKFNIARQDLETGAMQV-LTSTR--LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQG-- 437 (448)
T ss_pred EEEEec-CCceEEEEEECCCCCeEE-ccCCC--CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCC--
Confidence 887642 234578888988876543 22211 12234799999988775543 3 3777787 4555555544322
Q ss_pred CcceEEEcC
Q 001184 634 SLPRLRFNK 642 (1130)
Q Consensus 634 ~i~~v~~s~ 642 (1130)
.+...+|+|
T Consensus 438 ~~~~p~Wsp 446 (448)
T PRK04792 438 EVKSPAWSP 446 (448)
T ss_pred CcCCCccCC
Confidence 466777776
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.5e-10 Score=129.05 Aligned_cols=237 Identities=15% Similarity=0.121 Sum_probs=149.8
Q ss_pred eEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCC---CeEEEEEecCCccceee
Q 001184 371 EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTK---HLIHLYTYQGSNDLCQS 447 (1130)
Q Consensus 371 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~ 447 (1130)
.|.++|.+.+... .+..+...+...+|||||+.||..+.+ ..|.+||+.+++...
T Consensus 180 ~l~~~d~~g~~~~--------------------~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-- 237 (430)
T PRK00178 180 TLQRSDYDGARAV--------------------TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-- 237 (430)
T ss_pred EEEEECCCCCCce--------------------EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--
Confidence 4778888755432 234566789999999999999887644 369999998876432
Q ss_pred eeeecCCCCeeEEEEecCCCceEEEEEcCCC--cEEEEecCCCeeeEecCCCcCEEEEeecccCCccEEEEEe-cCC--c
Q 001184 448 LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK--LIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA-VDG--K 522 (1130)
Q Consensus 448 ~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~--~v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg--~ 522 (1130)
+....+.+...+|+|||+. ++++.+.++ .|.+||..+.....+..+........|++ +++.++..+ .+| .
T Consensus 238 --l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~sp--Dg~~i~f~s~~~g~~~ 312 (430)
T PRK00178 238 --ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGK--DGRTLYFTSDRGGKPQ 312 (430)
T ss_pred --ccCCCCCcCCeEECCCCCE-EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECC--CCCEEEEEECCCCCce
Confidence 2333344567899999995 334555555 58888955555566666666666677754 556555544 344 4
Q ss_pred EEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCE
Q 001184 523 IKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNR 602 (1130)
Q Consensus 523 i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 602 (1130)
|.++++.+++... +...........|+|||+.++.... .++...|++||+.+++........ ......|+|+|+.
T Consensus 313 iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~-~~~~~~l~~~dl~tg~~~~lt~~~---~~~~p~~spdg~~ 387 (430)
T PRK00178 313 IYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHR-QDGNFHVAAQDLQRGSVRILTDTS---LDESPSVAPNGTM 387 (430)
T ss_pred EEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEc-cCCceEEEEEECCCCCEEEccCCC---CCCCceECCCCCE
Confidence 6666766554332 2222233445789999999988764 223457999999887654332221 1224579999998
Q ss_pred EEEEeCC---CcEEEEeCCCCceeEEEeccCCCCCcceEEEcC
Q 001184 603 ILAAGED---NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1130)
Q Consensus 603 l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~ 642 (1130)
++..+.+ ..|+++++... ....+....+ .+...+|+|
T Consensus 388 i~~~~~~~g~~~l~~~~~~g~-~~~~l~~~~g--~~~~p~ws~ 427 (430)
T PRK00178 388 LIYATRQQGRGVLMLVSINGR-VRLPLPTAQG--EVREPSWSP 427 (430)
T ss_pred EEEEEecCCceEEEEEECCCC-ceEECcCCCC--CcCCCccCC
Confidence 8876643 35777787543 3333433222 456667766
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.6e-10 Score=128.36 Aligned_cols=228 Identities=11% Similarity=0.022 Sum_probs=141.6
Q ss_pred cCCCCEEEEEEecCCCe--EEEEEeCcC--eEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC
Q 001184 345 HQGSSVVSMDFHPFHHT--LLVVGCGDG--EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~--llasg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 420 (1130)
.....+..-+|||||+. ++++...+| .|.+.++.+|+... +....+.....+||||
T Consensus 182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~~~p~wSPD 241 (428)
T PRK01029 182 QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQLMPTFSPR 241 (428)
T ss_pred cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCccceEECCC
Confidence 34556778899999975 333444443 58888888876543 2223344557899999
Q ss_pred CCEEEEEeC-----CCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--c--CCCeee
Q 001184 421 GNFIGVAFT-----KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--L--SGRKLF 491 (1130)
Q Consensus 421 g~~las~~~-----d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~--~~~~~~ 491 (1130)
|+.||..+. +..+.+|++.++..-.......++.+.....+|+|||+. ++++...++...||. . .+....
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~-Laf~s~~~g~~~ly~~~~~~~g~~~~ 320 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTR-LVFVSNKDGRPRIYIMQIDPEGQSPR 320 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECcccccceE
Confidence 999987653 223445777653211111112223344567899999995 333444566656664 3 234455
Q ss_pred EecCCCcCEEEEeecccCCccEEEEEecC---CcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcE
Q 001184 492 QFEGHEAPVYSVCPHQKENIHFIFSTAVD---GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSH 568 (1130)
Q Consensus 492 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1130)
.+..+...+....|+| ||+.|+..+.+ ..|.+||+.+++..... .....+....|+|||+.|+..+. ..+...
T Consensus 321 ~lt~~~~~~~~p~wSP--DG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wSpDG~~L~f~~~-~~g~~~ 396 (428)
T PRK01029 321 LLTKKYRNSSCPAWSP--DGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSWAIDSLHLVYSAG-NSNESE 396 (428)
T ss_pred EeccCCCCccceeECC--CCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEECCCCCEEEEEEC-CCCCce
Confidence 5655556667777755 55677665443 36899999877654432 22345678999999999887653 234678
Q ss_pred EEEeeCCCCceeEEEecccCceeEEEEEcCC
Q 001184 569 LVEWNESEGALKRTYIGFRKKSAGVVQFDTT 599 (1130)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~ 599 (1130)
|+++|+.+++......+ .+.+...+|+|-
T Consensus 397 L~~vdl~~g~~~~Lt~~--~g~~~~p~Ws~~ 425 (428)
T PRK01029 397 LYLISLITKKTRKIVIG--SGEKRFPSWGAF 425 (428)
T ss_pred EEEEECCCCCEEEeecC--CCcccCceecCC
Confidence 99999988776554432 224555677764
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.7e-11 Score=119.92 Aligned_cols=121 Identities=19% Similarity=0.429 Sum_probs=91.1
Q ss_pred cCCCCEEEEEEecCCCeEEEE-EeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVV-GCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llas-g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 423 (1130)
...+.|.+++|+|+|+.++++ |..++.|.|||++ ++.+. .-+...+..+.|||+|++
T Consensus 57 ~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~---------------------~~~~~~~n~i~wsP~G~~ 114 (194)
T PF08662_consen 57 KKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIF---------------------SFGTQPRNTISWSPDGRF 114 (194)
T ss_pred cCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeE---------------------eecCCCceEEEECCCCCE
Confidence 345579999999999975444 4567899999996 44332 123457889999999999
Q ss_pred EEEEeCC---CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEc------CCCcEEEEecCCCeeeEec
Q 001184 424 IGVAFTK---HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG------DDKLIRVWDLSGRKLFQFE 494 (1130)
Q Consensus 424 las~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s------~d~~v~iwd~~~~~~~~~~ 494 (1130)
||+++.+ |.|.+||+++.+.+. .. .|. .++.++|+|||+ +++++. .|+.++||+..|+.+....
T Consensus 115 l~~~g~~n~~G~l~~wd~~~~~~i~---~~-~~~-~~t~~~WsPdGr--~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~ 187 (194)
T PF08662_consen 115 LVLAGFGNLNGDLEFWDVRKKKKIS---TF-EHS-DATDVEWSPDGR--YLATATTSPRLRVDNGFKIWSFQGRLLYKKP 187 (194)
T ss_pred EEEEEccCCCcEEEEEECCCCEEee---cc-ccC-cEEEEEEcCCCC--EEEEEEeccceeccccEEEEEecCeEeEecc
Confidence 9998754 679999999766543 22 233 478999999999 566654 3889999998898876643
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-10 Score=114.10 Aligned_cols=262 Identities=12% Similarity=0.194 Sum_probs=174.5
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeec--CCCccEEEEEEcCCCC-
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVK--DSSISVSRVAWSPDGN- 422 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~v~~spdg~- 422 (1130)
..+-|.+|.|..+|. +||+|..+|.|.++.-+.... .+++++.... +.......++ .-...|..+.|.+++.
T Consensus 24 eadiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~---~ey~~~t~fq-shepEFDYLkSleieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 24 EADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYK---GEYNFQTEFQ-SHEPEFDYLKSLEIEEKINKIRWLDDGNL 98 (433)
T ss_pred hhcceeeEEeecccc-eEeecCCCCeEEEeecccccc---cceeeeeeee-ccCcccchhhhhhhhhhhhhceecCCCCc
Confidence 456799999999999 499999999999997653322 1111110000 0000000011 1235789999999765
Q ss_pred -EEEEEeCCCeEEEEEecCCccce--------------------------------eeee-eecCCCCeeEEEEecCCCc
Q 001184 423 -FIGVAFTKHLIHLYTYQGSNDLC--------------------------------QSLE-IDAHVGGVNDLAFSYPNKQ 468 (1130)
Q Consensus 423 -~las~~~d~~i~vwd~~~~~~~~--------------------------------~~~~-~~~h~~~V~~i~~s~d~~~ 468 (1130)
.+...+.|++|++|.+....... +... -.+|...|.+|+++.|+.
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E- 177 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE- 177 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-
Confidence 56667789999999985422110 0001 246888899999999998
Q ss_pred eEEEEEcCCCcEEEEe--cCCCe--eeEecCC-----CcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcc------
Q 001184 469 LCIVTCGDDKLIRVWD--LSGRK--LFQFEGH-----EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS------ 533 (1130)
Q Consensus 469 l~l~s~s~d~~v~iwd--~~~~~--~~~~~~h-----~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~------ 533 (1130)
.++++ .|=.|-+|+ ...+. +..++.+ +.-|++..|+|... +.++..+..|+|++.|++....
T Consensus 178 -t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 178 -TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred -eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchhh
Confidence 55655 577899999 34433 2333333 34578888988654 6788888899999999984221
Q ss_pred eeee----------cCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeC-CCCceeEEEecccCc-----------e-
Q 001184 534 RVDY----------DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE-SEGALKRTYIGFRKK-----------S- 590 (1130)
Q Consensus 534 ~~~~----------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~-~~~~~~~~~~~~~~~-----------~- 590 (1130)
.... ...-..|..+.|+.+|+++++-. --+|.+||+ ...+++.+++-|... .
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~I 329 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAI 329 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccch
Confidence 1111 11112578899999999999864 478999999 556777777665321 1
Q ss_pred --eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 001184 591 --AGVVQFDTTRNRILAAGEDNQIKFWDMDNVN 621 (1130)
Q Consensus 591 --v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 621 (1130)
-..++|+.++.++++|+....+++++...|.
T Consensus 330 fdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 330 FDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred hheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 1247899888999999999999999965543
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.5e-10 Score=117.16 Aligned_cols=286 Identities=11% Similarity=0.090 Sum_probs=191.1
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 426 (1130)
.-++..+.|||.|++ |++.. -..|.+|.-.....+.. --...|..+.|||+++||.+
T Consensus 32 ~~p~~~~~~SP~G~~-l~~~~-~~~V~~~~g~~~~~l~~---------------------~~~~~V~~~~fSP~~kYL~t 88 (561)
T COG5354 32 NWPVAYVSESPLGTY-LFSEH-AAGVECWGGPSKAKLVR---------------------FRHPDVKYLDFSPNEKYLVT 88 (561)
T ss_pred CcchhheeecCcchh-eehhh-ccceEEccccchhheee---------------------eecCCceecccCcccceeee
Confidence 447889999999985 66554 34689998776553321 11236899999999999998
Q ss_pred EeCCC---------------eEEEEEecCCccceeeeeeecCCCC--ee-EEEEecCCCceEEEEEcCCCcEEEEecCCC
Q 001184 427 AFTKH---------------LIHLYTYQGSNDLCQSLEIDAHVGG--VN-DLAFSYPNKQLCIVTCGDDKLIRVWDLSGR 488 (1130)
Q Consensus 427 ~~~d~---------------~i~vwd~~~~~~~~~~~~~~~h~~~--V~-~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~ 488 (1130)
-+..+ .+.+||+.+|..+. .+.+...+ .+ -+.|+-++++ ++-- -...++|++.++.
T Consensus 89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~---sf~~~~q~~~~Wp~~k~s~~D~y--~ARv-v~~sl~i~e~t~n 162 (561)
T COG5354 89 WSREPIIEPEIEISPFTSKNNVFVWDIASGMIVF---SFNGISQPYLGWPVLKFSIDDKY--VARV-VGSSLYIHEITDN 162 (561)
T ss_pred eccCCccChhhccCCccccCceeEEeccCceeEe---eccccCCcccccceeeeeecchh--hhhh-ccCeEEEEecCCc
Confidence 65443 49999999987554 34444444 55 6889999883 3332 2346888885332
Q ss_pred e-eeEecCC-CcCEEEEeecccCCccEEEEE-----ecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeee
Q 001184 489 K-LFQFEGH-EAPVYSVCPHQKENIHFIFST-----AVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGT 561 (1130)
Q Consensus 489 ~-~~~~~~h-~~~v~~~~~~~~~~~~~l~s~-----s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1130)
. ...+..- ...|....|+|..++..|+.- +.++++++|.+.....+.....-...-..+.|.+.|+++++-..
T Consensus 163 ~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~ 242 (561)
T COG5354 163 IEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVM 242 (561)
T ss_pred cccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEE
Confidence 2 1222211 255777788887676666543 56788999998865555543333333456888999998775432
Q ss_pred -------cCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEE--eCCCcEEEEeCCCCceeEEEeccCCC
Q 001184 562 -------SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAA--GEDNQIKFWDMDNVNMLTSTEAEGGL 632 (1130)
Q Consensus 562 -------~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~ 632 (1130)
+.-+...+++++++...+ ..... ..++|...+|.|.++.+++. -.+-.+.++|++.. ....+...
T Consensus 243 t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~-~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~--- 316 (561)
T COG5354 243 THTKSNKSYFGESNLYLLRITERSI-PVEKD-LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQ--- 316 (561)
T ss_pred EeeecccceeccceEEEEeeccccc-ceecc-ccccceeeeecccCCceeEEecccccceeecccccc-eEEecCCc---
Confidence 112357789999874333 33322 33489999999999877664 47888999998765 43333322
Q ss_pred CCcceEEEcCCCCEEEEEeCC---CcEEEEEcCCCchhh
Q 001184 633 PSLPRLRFNKEGNLLVVTTAD---QGIKILANADGLRAL 668 (1130)
Q Consensus 633 ~~i~~v~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~ 668 (1130)
.=+.+.|+|.+++++.++-| |.+.+|+......+.
T Consensus 317 -~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~ 354 (561)
T COG5354 317 -KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVA 354 (561)
T ss_pred -ccccccccCcccEEEEecCCccccceEEeccCCceEEE
Confidence 34678899999999987765 679999987764444
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.7e-10 Score=129.06 Aligned_cols=210 Identities=17% Similarity=0.116 Sum_probs=138.1
Q ss_pred ecCCCccEEEEEEcCCCCEEEEEeCC---CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCC--c
Q 001184 405 VKDSSISVSRVAWSPDGNFIGVAFTK---HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK--L 479 (1130)
Q Consensus 405 ~~~h~~~V~~v~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~--~ 479 (1130)
+..+...+.+.+|||||++||.++.+ ..|++||+.+++... +..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 34566678999999999999988654 479999999875332 3445566778999999985 344555544 5
Q ss_pred EEEEecCCCeeeEecCCCcCEEEEeecccCCccEEEEEec-CC--cEEEEEccCCcceeeecCCCccEEEEEEecCCCeE
Q 001184 480 IRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV-DG--KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRL 556 (1130)
Q Consensus 480 v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1130)
|++||..+.....+..+........|++ +++.|+..+. ++ .|.++|+.+... ..+...........|+|+|+++
T Consensus 260 i~~~d~~~~~~~~l~~~~~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i 336 (417)
T TIGR02800 260 IYVMDLDGKQLTRLTNGPGIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLI 336 (417)
T ss_pred EEEEECCCCCEEECCCCCCCCCCEEECC--CCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEE
Confidence 8888855555556655655555667754 5666665544 33 566777765443 3344445567788999999999
Q ss_pred EEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCceeEEEe
Q 001184 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDN---QIKFWDMDNVNMLTSTE 627 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~ 627 (1130)
+.+.... +...|++||+.++... .+... . ......|+|++++|+..+.++ .+++.+.. +.....+.
T Consensus 337 ~~~~~~~-~~~~i~~~d~~~~~~~-~l~~~-~-~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 337 AFVHREG-GGFNIAVMDLDGGGER-VLTDT-G-LDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred EEEEccC-CceEEEEEeCCCCCeE-EccCC-C-CCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECC
Confidence 9887421 2458999999876543 23221 1 233467999999888876654 45555543 44444443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.9e-10 Score=130.33 Aligned_cols=224 Identities=14% Similarity=0.085 Sum_probs=135.3
Q ss_pred eccCCCCEEEEEEecCCCeEEEEEeCcC--eEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC
Q 001184 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDG--EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1130)
Q Consensus 343 ~~~h~~~V~~v~fspdg~~llasg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 420 (1130)
...+...+.+.+|||||++++++...++ .|.+||+.+++... +....+.....+||||
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------------------lt~~~g~~~~~~wSPD 272 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------------------VTSFPGINGAPRFSPD 272 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ecCCCCCcCCeeECCC
Confidence 3456778899999999997555544443 58899998876532 1111223446899999
Q ss_pred CCEEEEE-eCCCe--EEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCC--cEEEEecCCCeeeEecC
Q 001184 421 GNFIGVA-FTKHL--IHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK--LIRVWDLSGRKLFQFEG 495 (1130)
Q Consensus 421 g~~las~-~~d~~--i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~--~v~iwd~~~~~~~~~~~ 495 (1130)
|+.|+.. +.++. |.+||+.+++.. .+..+.......+|+|||+. ++++...++ .|.++|..+.....+..
T Consensus 273 G~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~ 347 (448)
T PRK04792 273 GKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVSRLTF 347 (448)
T ss_pred CCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEEEEec
Confidence 9988764 55564 777888876532 24445566788999999995 334444444 45556644333444332
Q ss_pred CCcCEEEEeecccCCccEEEEEec-CCc--EEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEe
Q 001184 496 HEAPVYSVCPHQKENIHFIFSTAV-DGK--IKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEW 572 (1130)
Q Consensus 496 h~~~v~~~~~~~~~~~~~l~s~s~-dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1130)
........+|+| +++.|+..+. ++. |.++|++++.... +... .......|+|||++|+.... .++...++++
T Consensus 348 ~g~~~~~~~~Sp--DG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~-~~g~~~l~~~ 422 (448)
T PRK04792 348 EGEQNLGGSITP--DGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTT-YQGKQVLAAV 422 (448)
T ss_pred CCCCCcCeeECC--CCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEe-cCCceEEEEE
Confidence 222233456654 5566665544 444 4445666554332 2211 12234579999999988764 2345568888
Q ss_pred eCCCCceeEEEecccCceeEEEEEcC
Q 001184 573 NESEGALKRTYIGFRKKSAGVVQFDT 598 (1130)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1130)
+. +|...+.+..... .+...+|+|
T Consensus 423 ~~-~G~~~~~l~~~~g-~~~~p~Wsp 446 (448)
T PRK04792 423 SI-DGRFKARLPAGQG-EVKSPAWSP 446 (448)
T ss_pred EC-CCCceEECcCCCC-CcCCCccCC
Confidence 86 4656565654322 455566765
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.1e-10 Score=113.25 Aligned_cols=162 Identities=20% Similarity=0.378 Sum_probs=114.9
Q ss_pred EEEEEcCCCCEEEEEeC----------CCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001184 413 SRVAWSPDGNFIGVAFT----------KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRV 482 (1130)
Q Consensus 413 ~~v~~spdg~~las~~~----------d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~i 482 (1130)
..+.|+|+|++|+.-.. -+...+|.++..........+. ..++|.+++|+|+|+.+.+++|..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK-KEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc-CCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 46889999998876533 1345666664332222222222 345799999999999755566767889999
Q ss_pred EecCCCeeeEecCCCcCEEEEeecccCCccEEEEEecC---CcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEe
Q 001184 483 WDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD---GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSC 559 (1130)
Q Consensus 483 wd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1130)
||.+++.+..+. ...++.+.|+| +|++|++++.+ |.|.+||.++.+.+..... ..+..++|+|||++++++
T Consensus 88 yd~~~~~i~~~~--~~~~n~i~wsP--~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 88 YDVKGKKIFSFG--TQPRNTISWSP--DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLATA 161 (194)
T ss_pred EcCcccEeEeec--CCCceEEEECC--CCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEEEE
Confidence 997788888774 46778898865 55788888744 6799999997666655443 347899999999999998
Q ss_pred eec--CCCCcEEEEeeCCCCceeEE
Q 001184 560 GTS--KEGDSHLVEWNESEGALKRT 582 (1130)
Q Consensus 560 ~~~--~~~~~~i~~wd~~~~~~~~~ 582 (1130)
... ...++.++||+.. |+.+..
T Consensus 162 ~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EeccceeccccEEEEEec-CeEeEe
Confidence 753 2246778999974 555443
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-09 Score=108.83 Aligned_cols=192 Identities=15% Similarity=0.253 Sum_probs=121.1
Q ss_pred CCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCC----eeeEecCCC------------cCEEEEeecccCCccEEE
Q 001184 454 VGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGR----KLFQFEGHE------------APVYSVCPHQKENIHFIF 515 (1130)
Q Consensus 454 ~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~----~~~~~~~h~------------~~v~~~~~~~~~~~~~l~ 515 (1130)
..-|.++.|...|. +|++|..+|.|.++. ...+ ....+..|. ..|..+.|....+...++
T Consensus 25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 45689999999999 899999999999998 2222 222333343 357778888888888899
Q ss_pred EEecCCcEEEEEccCCcceee-----ecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCce
Q 001184 516 STAVDGKIKAWLYDNVGSRVD-----YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKS 590 (1130)
Q Consensus 516 s~s~dg~i~vwd~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~ 590 (1130)
..+.|.+|++|.+........ .......+.++..- +.+.. +- +. ...+.+.+...|.--
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p------~~~~~----~~-~v-----ea~prRv~aNaHtyh 166 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLP------VEGRH----DL-EV-----EASPRRVYANAHTYH 166 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeece------eeccc----cc-ee-----eeeeeeeccccceeE
Confidence 999999999998876444331 01111112222111 00000 00 00 012334555445557
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-eeEEEeccCC-----CCCcceEEEcCC-CCEEEEEeCCCcEEEEEcCC
Q 001184 591 AGVVQFDTTRNRILAAGEDNQIKFWDMDNVN-MLTSTEAEGG-----LPSLPRLRFNKE-GNLLVVTTADQGIKILANAD 663 (1130)
Q Consensus 591 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~-----~~~i~~v~~s~~-~~~l~~~~~dg~i~iw~~~~ 663 (1130)
+.++.++.|+..++++. |=.|.+|+++--. .......... ..-|++..|+|. -++++-.+..|+|++-|+..
T Consensus 167 iNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~ 245 (433)
T KOG1354|consen 167 INSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ 245 (433)
T ss_pred eeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence 88999999998888774 6789999986432 2222211111 124788899994 46777788899999999864
Q ss_pred C
Q 001184 664 G 664 (1130)
Q Consensus 664 ~ 664 (1130)
.
T Consensus 246 ~ 246 (433)
T KOG1354|consen 246 S 246 (433)
T ss_pred h
Confidence 3
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-09 Score=122.59 Aligned_cols=241 Identities=12% Similarity=0.064 Sum_probs=147.7
Q ss_pred CeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE---EEeCC--CeEEEEEecCCccc
Q 001184 370 GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG---VAFTK--HLIHLYTYQGSNDL 444 (1130)
Q Consensus 370 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la---s~~~d--~~i~vwd~~~~~~~ 444 (1130)
..|.+.|.+.+.... +......+.+-+|||||+.++ +...+ ..|.+.++.+|+..
T Consensus 165 ~~l~~~d~dG~~~~~--------------------lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~ 224 (428)
T PRK01029 165 GELWSVDYDGQNLRP--------------------LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK 224 (428)
T ss_pred ceEEEEcCCCCCceE--------------------cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce
Confidence 367777877655432 333445667889999998633 33333 36888888887643
Q ss_pred eeeeeeecCCCCeeEEEEecCCCceEEEEEcC----CCcEEEEe-cC---CCeeeEecCCCcCEEEEeecccCCccEEEE
Q 001184 445 CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD----DKLIRVWD-LS---GRKLFQFEGHEAPVYSVCPHQKENIHFIFS 516 (1130)
Q Consensus 445 ~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~----d~~v~iwd-~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 516 (1130)
+ +....+.....+|||||+. ++++... |-.+.+|+ .. +.......++.......+|+ +||+.|+.
T Consensus 225 ~----lt~~~g~~~~p~wSPDG~~-Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS--PDG~~Laf 297 (428)
T PRK01029 225 K----ILALQGNQLMPTFSPRKKL-LAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS--PDGTRLVF 297 (428)
T ss_pred E----eecCCCCccceEECCCCCE-EEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC--CCCCEEEE
Confidence 2 3334445567899999995 3333332 33455577 33 23222232333344566775 56666665
Q ss_pred Ee-cCCcEEEEEc--cC-CcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeE
Q 001184 517 TA-VDGKIKAWLY--DN-VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAG 592 (1130)
Q Consensus 517 ~s-~dg~i~vwd~--~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~ 592 (1130)
.+ .+|...+|.+ +. +.....+......+....|+|||+.|+..+. .++...|++||+.+++......+ ...+.
T Consensus 298 ~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~-~~g~~~I~v~dl~~g~~~~Lt~~--~~~~~ 374 (428)
T PRK01029 298 VSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSV-IKGVRQICVYDLATGRDYQLTTS--PENKE 374 (428)
T ss_pred EECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEc-CCCCcEEEEEECCCCCeEEccCC--CCCcc
Confidence 54 5676666654 32 2223334444456678899999999998764 23456899999998876544332 22456
Q ss_pred EEEEcCCCCEEEEEeC---CCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCC
Q 001184 593 VVQFDTTRNRILAAGE---DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1130)
Q Consensus 593 ~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~ 643 (1130)
...|+|||+.|+.... ...|+++|+.+++........+ .+...+|+|-
T Consensus 375 ~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g---~~~~p~Ws~~ 425 (428)
T PRK01029 375 SPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSG---EKRFPSWGAF 425 (428)
T ss_pred ceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC---cccCceecCC
Confidence 6889999998876443 3578999998877655443222 4566778774
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.7e-10 Score=129.71 Aligned_cols=212 Identities=17% Similarity=0.137 Sum_probs=136.8
Q ss_pred eeeccCCCCEEEEEEecCCCeEEEEEeCc--CeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEc
Q 001184 341 ACTMHQGSSVVSMDFHPFHHTLLVVGCGD--GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1130)
Q Consensus 341 ~~~~~h~~~V~~v~fspdg~~llasg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 418 (1130)
.....+...+.+.+|||||++++++...+ ..|++||+.+++... +..+.+.+.+++|+
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~~~~~~~~~~~~s 242 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------VASFPGMNGAPAFS 242 (417)
T ss_pred EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------eecCCCCccceEEC
Confidence 33445777899999999999744443322 479999999876542 22345567789999
Q ss_pred CCCCEEEEE-eCCC--eEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEE-EcCCC--cEEEEecCCCeeeE
Q 001184 419 PDGNFIGVA-FTKH--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVT-CGDDK--LIRVWDLSGRKLFQ 492 (1130)
Q Consensus 419 pdg~~las~-~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s-~s~d~--~v~iwd~~~~~~~~ 492 (1130)
|||+.|+.. +.++ .|.+||+.++... .+..+.......+|+|||+. |+. ...++ .|.++|..+.....
T Consensus 243 pDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~~--l~~~s~~~g~~~iy~~d~~~~~~~~ 316 (417)
T TIGR02800 243 PDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGKS--IAFTSDRGGSPQIYMMDADGGEVRR 316 (417)
T ss_pred CCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCCE--EEEEECCCCCceEEEEECCCCCEEE
Confidence 999988754 4343 5888898876532 24445555667899999994 443 33333 57777854444555
Q ss_pred ecCCCcCEEEEeecccCCccEEEEEecCC---cEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEE
Q 001184 493 FEGHEAPVYSVCPHQKENIHFIFSTAVDG---KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHL 569 (1130)
Q Consensus 493 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1130)
+..+...+....|++ ++.+++.++.++ .|.+||+.+..... +... .......|+|||++|+..... ++...+
T Consensus 317 l~~~~~~~~~~~~sp--dg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~p~~spdg~~l~~~~~~-~~~~~l 391 (417)
T TIGR02800 317 LTFRGGYNASPSWSP--DGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT-GLDESPSFAPNGRMILYATTR-GGRGVL 391 (417)
T ss_pred eecCCCCccCeEECC--CCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEeC-CCcEEE
Confidence 555556666777754 557787777665 78888887644332 2222 223456899999999888752 234456
Q ss_pred EEeeCCCCceeEEEe
Q 001184 570 VEWNESEGALKRTYI 584 (1130)
Q Consensus 570 ~~wd~~~~~~~~~~~ 584 (1130)
++.+.. +.....+.
T Consensus 392 ~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 392 GLVSTD-GRFRARLP 405 (417)
T ss_pred EEEECC-CceeeECC
Confidence 666643 44444443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.5e-09 Score=110.50 Aligned_cols=261 Identities=15% Similarity=0.117 Sum_probs=163.1
Q ss_pred CeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeC----------CCeEEEEEec
Q 001184 370 GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFT----------KHLIHLYTYQ 439 (1130)
Q Consensus 370 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~----------d~~i~vwd~~ 439 (1130)
++|.+.|..+++.+... -.+.... .+ +||||+.|.++.. +..|.+||..
T Consensus 27 ~~v~ViD~~~~~v~g~i------------------~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMT------------------DGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred ceEEEEECCCCEEEEEE------------------EccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 79999999998877531 1122222 24 9999998887755 6889999999
Q ss_pred CCccceeeeeeec-C---CCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEE
Q 001184 440 GSNDLCQSLEIDA-H---VGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFI 514 (1130)
Q Consensus 440 ~~~~~~~~~~~~~-h---~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 514 (1130)
+.+.+.....-.. + ...-..++++|||+.+++.--+.+..|.+.| .+++.+.++.--. ...-+. ..+.. .
T Consensus 86 t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~---t~e~~-~ 160 (352)
T TIGR02658 86 THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFP---TANDT-F 160 (352)
T ss_pred cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEE---ecCCc-c
Confidence 9886653321000 1 2234578999999953222234489999999 8888887776322 111111 11111 2
Q ss_pred EEEecCCcEEEEEccCCcceee-----ecCCCccE-EEEEEec-CCCeEEEeeecCCCCcEEEEeeCCC-----CceeEE
Q 001184 515 FSTAVDGKIKAWLYDNVGSRVD-----YDAPGLWC-TTMLYSA-DGSRLFSCGTSKEGDSHLVEWNESE-----GALKRT 582 (1130)
Q Consensus 515 ~s~s~dg~i~vwd~~~~~~~~~-----~~~~~~~v-~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~-----~~~~~~ 582 (1130)
..-+.||......++....... +.....++ ..-.|.+ +|+++.+.. .|.|++.|+.. .+.+..
T Consensus 161 ~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~-----eG~V~~id~~~~~~~~~~~~~~ 235 (352)
T TIGR02658 161 FMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTY-----TGKIFQIDLSSGDAKFLPAIEA 235 (352)
T ss_pred EEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEec-----CCeEEEEecCCCcceecceeee
Confidence 2334566655544443332211 11100000 0014455 787777654 58999999543 333332
Q ss_pred Ee------cccCceeEEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCC-
Q 001184 583 YI------GFRKKSAGVVQFDTTRNRILAAG----------EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGN- 645 (1130)
Q Consensus 583 ~~------~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~- 645 (1130)
+. +.....+..++++++++++++.. ..+.|.++|..+++.+..+.... .+..++++||++
T Consensus 236 ~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~---~~~~iavS~Dgkp 312 (352)
T TIGR02658 236 FTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH---EIDSINVSQDAKP 312 (352)
T ss_pred ccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC---ceeeEEECCCCCe
Confidence 22 11222344599999999888843 22579999999999999887643 578999999999
Q ss_pred EEEEEe-CCCcEEEEEcCCC
Q 001184 646 LLVVTT-ADQGIKILANADG 664 (1130)
Q Consensus 646 ~l~~~~-~dg~i~iw~~~~~ 664 (1130)
+|++.. .++.|.++|..++
T Consensus 313 ~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 313 LLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred EEEEeCCCCCcEEEEECcCC
Confidence 887666 5788999999887
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.9e-10 Score=127.33 Aligned_cols=226 Identities=12% Similarity=0.063 Sum_probs=139.1
Q ss_pred eeeeccCCCCEEEEEEecCCCeEEEEEeCc--CeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEE
Q 001184 340 VACTMHQGSSVVSMDFHPFHHTLLVVGCGD--GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1130)
Q Consensus 340 ~~~~~~h~~~V~~v~fspdg~~llasg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 417 (1130)
......+...+...+|||||++++++...+ ..|.+||+.+++... +....+.+...+|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~~~~ 250 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGAPAW 250 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCCeEE
Confidence 344456788899999999999755554333 369999999886543 1222334557899
Q ss_pred cCCCCEEEEE-eCCC--eEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCC--cEEEEe-cCCCeee
Q 001184 418 SPDGNFIGVA-FTKH--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK--LIRVWD-LSGRKLF 491 (1130)
Q Consensus 418 spdg~~las~-~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~--~v~iwd-~~~~~~~ 491 (1130)
||||+.|+.. +.++ .|.+||+.+++.. .+..+........|+|||+. ++++...++ .|.++| .+++ ..
T Consensus 251 SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~~d~~~g~-~~ 324 (430)
T PRK00178 251 SPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYKVNVNGGR-AE 324 (430)
T ss_pred CCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECCCCC-EE
Confidence 9999988754 4444 6888899887532 24455666778899999995 334444444 567777 4444 33
Q ss_pred EecCCCcCEEEEeecccCCccEEEEEec-CC--cEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcE
Q 001184 492 QFEGHEAPVYSVCPHQKENIHFIFSTAV-DG--KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSH 568 (1130)
Q Consensus 492 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1130)
.+...........|+ ++++.++..+. ++ .|.+||+.++..... .. ........|+|||+.++..+. ..+...
T Consensus 325 ~lt~~~~~~~~~~~S--pdg~~i~~~~~~~~~~~l~~~dl~tg~~~~l-t~-~~~~~~p~~spdg~~i~~~~~-~~g~~~ 399 (430)
T PRK00178 325 RVTFVGNYNARPRLS--ADGKTLVMVHRQDGNFHVAAQDLQRGSVRIL-TD-TSLDESPSVAPNGTMLIYATR-QQGRGV 399 (430)
T ss_pred EeecCCCCccceEEC--CCCCEEEEEEccCCceEEEEEECCCCCEEEc-cC-CCCCCCceECCCCCEEEEEEe-cCCceE
Confidence 333222223344565 45567766654 33 477888877654332 22 122235689999999988764 233567
Q ss_pred EEEeeCCCCceeEEEecccCceeEEEEEcC
Q 001184 569 LVEWNESEGALKRTYIGFRKKSAGVVQFDT 598 (1130)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1130)
|++++.. +...+.+... .+.+...+|+|
T Consensus 400 l~~~~~~-g~~~~~l~~~-~g~~~~p~ws~ 427 (430)
T PRK00178 400 LMLVSIN-GRVRLPLPTA-QGEVREPSWSP 427 (430)
T ss_pred EEEEECC-CCceEECcCC-CCCcCCCccCC
Confidence 8888875 3333344432 22445555655
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-08 Score=103.55 Aligned_cols=253 Identities=12% Similarity=0.210 Sum_probs=171.4
Q ss_pred CCCCceeEEEEecCCCEEEEEe----CCeEEEEECCC--ceeE--EEEeCCCCCeEEEEEeCCCCcEEEEEeC-CCcEEE
Q 001184 831 NAEDVVPCVALSKNDSYVMSAG----GGKVSLFNMMN--FKVM--TTFMSPPPASTFLAFHPQDNNIIAIGME-DSTIQI 901 (1130)
Q Consensus 831 ~~~~~i~~l~~s~dg~~la~~~----dg~i~iwd~~~--~~~~--~~~~~~~~~i~~l~~sp~~~~~lasg~~-dg~v~i 901 (1130)
......+-++++|+++.|.++. .|.|..|.++. |++. ........+-..+++++ ++++|+++.. .|.|.+
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v 115 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSV 115 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEE
Confidence 3566788899999999998875 36677776654 4443 22223334458899999 8888888775 478999
Q ss_pred EEeec-CeEEE--EEecCCCC----------eeEEEEccCCCeEEEEeC-CCcEEEEECCCCcccceeeEeccCCCCCCC
Q 001184 902 YNVRV-DEVKT--KLKGHQKH----------ITGLAFSTNLNILVSSGS-DAQLIFWNTDTWEKRKSIAIQLPAGKLPVG 967 (1130)
Q Consensus 902 wd~~~-~~~~~--~l~~h~~~----------V~~l~~s~dg~~L~s~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 967 (1130)
+-++. |.+.. .+..|.+. +....+.|++++|++.+- --.|.+|+++.+............+ .+
T Consensus 116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G---~G 192 (346)
T COG2706 116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPG---AG 192 (346)
T ss_pred EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCC---CC
Confidence 99965 43321 22335555 888999999999998764 2359999999877655555554333 77
Q ss_pred eEEEEEcCCCcEEEE-E-cCCcEEEEECCCc-eeeeeeec------CCCCCCCeEEEEECCCCCEEEEEeC-CCcEEEEe
Q 001184 968 ETRVQFHSDQVRLLV-N-HETQLAIYDGSKM-ECIRQWVP------QDVLSSPISSAAYSCNSQLIYATFT-DGSIGVFD 1037 (1130)
Q Consensus 968 v~~~~~s~d~~~l~~-~-~d~~i~v~d~~~~-~~~~~~~~------~~~~~~~v~~v~~s~dg~~l~t~~~-Dg~i~vwd 1037 (1130)
...|.|+|+++++.+ . -+++|.+|..... ..+..+.. .-.-.....+|.+++||++|.++.. ...|.+|.
T Consensus 193 PRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~ 272 (346)
T COG2706 193 PRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFS 272 (346)
T ss_pred cceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence 899999999998887 3 4899999998763 22222221 1112457788999999999998873 35788886
Q ss_pred CCC--cccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeC-CCcEEEEeCCCCcc
Q 001184 1038 ADS--LRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLT-DGSVKVIEPSETER 1097 (1130)
Q Consensus 1038 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-Dg~v~vW~~~~~~~ 1097 (1130)
+.. +++...-.. ..+...+-.+.++|. +++|+++.. +.+|.++.+.....
T Consensus 273 V~~~~g~L~~~~~~---------~teg~~PR~F~i~~~-g~~Liaa~q~sd~i~vf~~d~~TG 325 (346)
T COG2706 273 VDPDGGKLELVGIT---------PTEGQFPRDFNINPS-GRFLIAANQKSDNITVFERDKETG 325 (346)
T ss_pred EcCCCCEEEEEEEe---------ccCCcCCccceeCCC-CCEEEEEccCCCcEEEEEEcCCCc
Confidence 653 332211110 123344556888885 667777776 44799999876554
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.7e-10 Score=112.25 Aligned_cols=350 Identities=15% Similarity=0.187 Sum_probs=206.3
Q ss_pred eeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCeeeEec-CCCcCEEEEeecccCCccEEEEEecCCcEEE
Q 001184 449 EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFE-GHEAPVYSVCPHQKENIHFIFSTAVDGKIKA 525 (1130)
Q Consensus 449 ~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~v 525 (1130)
.++||.+.|++...-|-.. -+++.+.|.++|||- ..++.-..+. .-..+++++.+. .+...|+.|-..|++.-
T Consensus 19 ~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~--~e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYV--SESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeee--ccceEEEEEEecceEEE
Confidence 5789999999988888777 589999999999998 3343333332 223456666654 45578999999999988
Q ss_pred EEcc----CCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCC
Q 001184 526 WLYD----NVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN 601 (1130)
Q Consensus 526 wd~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 601 (1130)
+.+. ..........|...+..+.|+.....+++++. |..+.---.+.+..+..+.-... ..+..+.- .
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~----dk~~~~hc~e~~~~lg~Y~~~~~--~t~~~~d~--~ 166 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGK----DKQFAWHCTESGNRLGGYNFETP--ASALQFDA--L 166 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEecc----ccceEEEeeccCCcccceEeecc--CCCCceee--E
Confidence 8543 33444456677888999999999999999875 44443222333433322221110 01111111 1
Q ss_pred EEEEEeCCCcEEEEeCCC--CceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccc
Q 001184 602 RILAAGEDNQIKFWDMDN--VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETS 679 (1130)
Q Consensus 602 ~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 679 (1130)
+.+.|...|.|.+-.+.. -.++.++.. +...+.++.|.+....|++|..|..+.+||+.........+
T Consensus 167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~~--h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el-------- 236 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQNGCQLITTFNG--HTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYEL-------- 236 (404)
T ss_pred EEEecccccceEEEEEeecCCceEEEEcC--cccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeee--------
Confidence 455566667766665544 344555554 45589999999999999999999999999986542222222
Q ss_pred cccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEE
Q 001184 680 RASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVA 759 (1130)
Q Consensus 680 ~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~ 759 (1130)
T Consensus 237 -------------------------------------------------------------------------------- 236 (404)
T KOG1409|consen 237 -------------------------------------------------------------------------------- 236 (404)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcc-----ccccccccccc------CCCCcceeccC
Q 001184 760 MPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGK-----ATAAVAPQHWQ------PSNGLLMTNDV 828 (1130)
Q Consensus 760 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~-----~~~~~~~~~w~------~~~~~~~~~~~ 828 (1130)
.+|...+..+.+.+--+.+++++.||.|.+|+++........- ...-.++..|+ ...-.+.....
T Consensus 237 ----~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~c 312 (404)
T KOG1409|consen 237 ----QGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHC 312 (404)
T ss_pred ----ccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhh
Confidence 1255566666666667778888888888888876532211111 11111222232 22111111100
Q ss_pred CCCCCCceeEEEEecCCCEEEEEeCCeEEEEECC-------CceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEE
Q 001184 829 PENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMM-------NFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQI 901 (1130)
Q Consensus 829 ~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~-------~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~i 901 (1130)
+ .-...+...+-+....+...|..-.+|+-|.- +...+..+..-...|+++.+.. ...+|++++.|..|+|
T Consensus 313 r-kcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqe-tlglLvTsG~~Rvi~i 390 (404)
T KOG1409|consen 313 R-KCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQE-TLGLLVTSGTDRVIKI 390 (404)
T ss_pred h-hhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhh-hccceeecCCceEEEE
Confidence 0 00111222222222223333333345555431 1122333333345689999888 6778999999999999
Q ss_pred EEeec
Q 001184 902 YNVRV 906 (1130)
Q Consensus 902 wd~~~ 906 (1130)
||+..
T Consensus 391 wd~~~ 395 (404)
T KOG1409|consen 391 WDVRS 395 (404)
T ss_pred Eechh
Confidence 99863
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.2e-09 Score=110.70 Aligned_cols=287 Identities=14% Similarity=0.215 Sum_probs=183.9
Q ss_pred CCCCEEEEEEecCCCeEEEEEeC-----------cCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCG-----------DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSR 414 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 414 (1130)
|. .|.-+.|||+.+| |++-+. ...++|||+.+|...+. |.+ +++....-.-
T Consensus 249 Hp-~Vq~idfSP~EkY-LVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrs--F~~--------------~~~~~~~WP~ 310 (698)
T KOG2314|consen 249 HP-GVQFIDFSPNEKY-LVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRS--FPV--------------IKSPYLKWPI 310 (698)
T ss_pred CC-CceeeecCCccce-EEEecCCccccCcccCCCceEEEEEccccchhcc--eec--------------cCCCccccce
Confidence 44 6899999999996 676442 14699999999988763 221 1222222334
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcC--C---CcEEEEe-cCCC
Q 001184 415 VAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD--D---KLIRVWD-LSGR 488 (1130)
Q Consensus 415 v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~--d---~~v~iwd-~~~~ 488 (1130)
+.||.|++|+|--..| .|.||+..+-..+. ...+ .-..|....|+|.+. +||--.. + ..+.+-. .+++
T Consensus 311 frWS~DdKy~Arm~~~-sisIyEtpsf~lld-~Ksl--ki~gIr~FswsP~~~--llAYwtpe~~~~parvtL~evPs~~ 384 (698)
T KOG2314|consen 311 FRWSHDDKYFARMTGN-SISIYETPSFMLLD-KKSL--KISGIRDFSWSPTSN--LLAYWTPETNNIPARVTLMEVPSKR 384 (698)
T ss_pred EEeccCCceeEEeccc-eEEEEecCceeeec-cccc--CCccccCcccCCCcc--eEEEEcccccCCcceEEEEecCccc
Confidence 7899999999988775 59999876632221 1111 123588899999988 5553222 1 2345555 5555
Q ss_pred eeeEecCCCcCEEEEeecccCCccEEEEE----------ecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEE
Q 001184 489 KLFQFEGHEAPVYSVCPHQKENIHFIFST----------AVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFS 558 (1130)
Q Consensus 489 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----------s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1130)
.+++-.-| .|..+..+...+|.+|..- +.-..+.|+.++..........-...|...+|-|.|+.+++
T Consensus 385 ~iRt~nlf--nVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~v 462 (698)
T KOG2314|consen 385 EIRTKNLF--NVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAV 462 (698)
T ss_pred eeeeccce--eeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEE
Confidence 55544333 2444444445556666432 11224566666665555544445567889999999999887
Q ss_pred eeecCCCCcEEEEeeCCC-C---ceeEEEecccCceeEEEEEcCCCCEEEEE---eCCCcEEEEeCCCCceeEEEeccCC
Q 001184 559 CGTSKEGDSHLVEWNESE-G---ALKRTYIGFRKKSAGVVQFDTTRNRILAA---GEDNQIKFWDMDNVNMLTSTEAEGG 631 (1130)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~-~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~vwd~~~~~~~~~~~~~~~ 631 (1130)
.+. .+...++.+|..++ . .++..+.. ...+.+.|+|.|++++.+ |..|.+.++|+.......+- ...|
T Consensus 463 i~g-~~~k~tvsfY~~e~~~~~~~lVk~~dk---~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~-~~eh 537 (698)
T KOG2314|consen 463 ISG-NTVKNTVSFYAVETNIKKPSLVKELDK---KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTA-SPEH 537 (698)
T ss_pred EEc-cccccceeEEEeecCCCchhhhhhhcc---cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhcc-Cccc
Confidence 763 34467888888773 2 23344432 256679999999988875 46789999998753322221 1122
Q ss_pred CCCcceEEEcCCCCEEEEEeC------CCcEEEEEcCCC
Q 001184 632 LPSLPRLRFNKEGNLLVVTTA------DQGIKILANADG 664 (1130)
Q Consensus 632 ~~~i~~v~~s~~~~~l~~~~~------dg~i~iw~~~~~ 664 (1130)
. ..+.+.|.|.|+++++++. |...+||+....
T Consensus 538 ~-~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 538 F-AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred c-ccccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence 2 4688999999999999875 556788888665
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.5e-09 Score=112.91 Aligned_cols=193 Identities=13% Similarity=0.171 Sum_probs=150.4
Q ss_pred cCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEe------c------------CCCceEEEEEcCCCc
Q 001184 418 SPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFS------Y------------PNKQLCIVTCGDDKL 479 (1130)
Q Consensus 418 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s------~------------d~~~l~l~s~s~d~~ 479 (1130)
.|-+.|+|....||.+++||...++..........-.+.-++..|. | .+...+++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3456799999999999999998876433222222223344444542 1 112237888999999
Q ss_pred EEEEe-cCCCeeeEec--CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeE
Q 001184 480 IRVWD-LSGRKLFQFE--GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRL 556 (1130)
Q Consensus 480 v~iwd-~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1130)
|.+|+ ..|+.-..+. .|.++|+++.++. +-..|.+++.|+.+..|+.........+......+.+++++|||..+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~--~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQ--RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeeccc--ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 99999 7787777776 6999999998753 44689999999999999999988888888888889999999999999
Q ss_pred EEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCC-----CCEEEE-EeCCCcEEEEeCCC
Q 001184 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTT-----RNRILA-AGEDNQIKFWDMDN 619 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~-~~~dg~i~vwd~~~ 619 (1130)
+++ .++|.+||+++++.+..|.||.. +|+++.|... |.++++ ...+..+.+|-...
T Consensus 160 ~~a------s~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTA------SRQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eec------cceEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 998 46899999999999999999766 8999998876 666666 44566677886654
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-08 Score=110.73 Aligned_cols=192 Identities=17% Similarity=0.288 Sum_probs=147.1
Q ss_pred cCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEE-------------------
Q 001184 357 PFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW------------------- 417 (1130)
Q Consensus 357 pdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~------------------- 417 (1130)
|-+. ++|....||.++|||..+++......- ...-++.-++..|
T Consensus 3 ~~~~-~~A~~~~~g~l~iw~t~~~~~~~e~~p----------------~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~ 65 (541)
T KOG4547|consen 3 PALD-YFALSTGDGRLRIWDTAKNQLQQEFAP----------------IASLSGTCTYTKWGLSADYSPMKWLSLEKAKK 65 (541)
T ss_pred chhh-eEeecCCCCeEEEEEccCceeeeeecc----------------chhccCcceeEEEEEEeccchHHHHhHHHHhh
Confidence 3344 588889999999999998876542110 0011122223332
Q ss_pred -cCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecC
Q 001184 418 -SPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEG 495 (1130)
Q Consensus 418 -spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~ 495 (1130)
+.|-..||-|...|.|.+|++..|+.. ....-..|.+.|.++.++.+-. .|.|++.|+.+..|+ ..+..++.+.+
T Consensus 66 ~s~~t~~lvlgt~~g~v~~ys~~~g~it-~~~st~~h~~~v~~~~~~~~~~--ciyS~~ad~~v~~~~~~~~~~~~~~~~ 142 (541)
T KOG4547|consen 66 ASLDTSMLVLGTPQGSVLLYSVAGGEIT-AKLSTDKHYGNVNEILDAQRLG--CIYSVGADLKVVYILEKEKVIIRIWKE 142 (541)
T ss_pred ccCCceEEEeecCCccEEEEEecCCeEE-EEEecCCCCCcceeeecccccC--ceEecCCceeEEEEecccceeeeeecc
Confidence 223447788889999999999998743 3334468999999999998888 799999999999999 88888899999
Q ss_pred CCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecC-----CCeEEEeeecCCCCcEEE
Q 001184 496 HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSAD-----GSRLFSCGTSKEGDSHLV 570 (1130)
Q Consensus 496 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~~~~~~~~i~ 570 (1130)
....+.++++.+ |+.++++++ +.|++||+++.+....+.+|..+|+++.|..+ |.++++... ...-+.
T Consensus 143 ~~~~~~sl~is~--D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~---~~r~i~ 215 (541)
T KOG4547|consen 143 QKPLVSSLCISP--DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA---AERGIT 215 (541)
T ss_pred CCCccceEEEcC--CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc---ccccee
Confidence 889999999865 568888876 78999999999999999999999999999887 778777542 244566
Q ss_pred EeeCC
Q 001184 571 EWNES 575 (1130)
Q Consensus 571 ~wd~~ 575 (1130)
+|-..
T Consensus 216 ~w~v~ 220 (541)
T KOG4547|consen 216 VWVVE 220 (541)
T ss_pred EEEEE
Confidence 66543
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.4e-08 Score=112.09 Aligned_cols=305 Identities=11% Similarity=0.043 Sum_probs=180.9
Q ss_pred cEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCcee
Q 001184 512 HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSA 591 (1130)
Q Consensus 512 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 591 (1130)
..++.++.+|.+..+|..+++................ .++..+++++. ++.++.+|..+|+.+....... .+
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~----~g~l~ald~~tG~~~W~~~~~~--~~ 137 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTE----KGEVIALDAEDGKELWRAKLSS--EV 137 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcC----CCEEEEEECCCCcEeeeeccCc--ee
Confidence 5788888889999999888887776655443222222 24666766654 7899999999999887655322 22
Q ss_pred EE-EEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCC---cceEEEcCCCCEEEEEeCCCcEEEEEcCCCchh
Q 001184 592 GV-VQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPS---LPRLRFNKEGNLLVVTTADQGIKILANADGLRA 667 (1130)
Q Consensus 592 ~~-~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 667 (1130)
.+ ..+ .+..++.++.+|.|+.||.++|+.+........... ....... +..++.+..++.+..+|..++...
T Consensus 138 ~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 138 LSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred ecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEe
Confidence 21 112 345788888899999999999998877654332100 0111121 246777888899999998877322
Q ss_pred hhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeec
Q 001184 668 LRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELT 747 (1130)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~ 747 (1130)
...-... |. + .. ...++.+.
T Consensus 214 W~~~~~~-----------------------~~-----------------------------g------~~-~~~~~~~~- 233 (377)
T TIGR03300 214 WEQRVAL-----------------------PK-----------------------------G------RT-ELERLVDV- 233 (377)
T ss_pred eeecccc-----------------------CC-----------------------------C------CC-chhhhhcc-
Confidence 2100000 00 0 00 00000000
Q ss_pred cccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceecc
Q 001184 748 EIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTND 827 (1130)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 827 (1130)
. ....+ .+..+++++.+|.+..+|...++ .+|....+
T Consensus 234 ------------------~----~~p~~--~~~~vy~~~~~g~l~a~d~~tG~-------------~~W~~~~~------ 270 (377)
T TIGR03300 234 ------------------D----GDPVV--DGGQVYAVSYQGRVAALDLRSGR-------------VLWKRDAS------ 270 (377)
T ss_pred ------------------C----CccEE--ECCEEEEEEcCCEEEEEECCCCc-------------EEEeeccC------
Confidence 0 00011 14457777778888877654321 22332210
Q ss_pred CCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCC-CCCeEEEEEeCCCCcEEEEEeCCCcEEEEEee
Q 001184 828 VPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSP-PPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR 905 (1130)
Q Consensus 828 ~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~ 905 (1130)
. ....+ .++..+++++ +|.+..+|..+++.+...... .....+... .+..|++++.+|.|+++|..
T Consensus 271 ---~----~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 271 ---S----YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred ---C----ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEEEEEeCCCEEEEEECC
Confidence 0 11122 2344555555 899999999999887665321 222233333 23477889999999999999
Q ss_pred cCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEE
Q 001184 906 VDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFW 944 (1130)
Q Consensus 906 ~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vw 944 (1130)
+++.+.+++.+...+..--...+ +.|+.++.||.|+.+
T Consensus 339 tG~~~~~~~~~~~~~~~sp~~~~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 339 DGSFVARLKTDGSGIASPPVVVG-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CCCEEEEEEcCCCccccCCEEEC-CEEEEEeCCceEEEe
Confidence 99999998876654433222223 468889999988765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.6e-10 Score=132.56 Aligned_cols=202 Identities=18% Similarity=0.287 Sum_probs=159.2
Q ss_pred eccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCC
Q 001184 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1130)
Q Consensus 343 ~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 422 (1130)
..++-..|.++.=+|...+ .++|+.||.|++|.+..+..+.. |+. .|. ..|+.+.|+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~-Yltgs~dgsv~~~~w~~~~~v~~-----~rt------------~g~-s~vtr~~f~~qGn 2264 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPY-YLTGSQDGSVRMFEWGHGQQVVC-----FRT------------AGN-SRVTRSRFNHQGN 2264 (2439)
T ss_pred eecccCceeeecCCCCCce-EEecCCCceEEEEeccCCCeEEE-----eec------------cCc-chhhhhhhcccCC
Confidence 3456789999999999884 78999999999999998877652 221 133 7899999999999
Q ss_pred EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEc---CCCcEEEEe--cCCCeeeEecCCC
Q 001184 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG---DDKLIRVWD--LSGRKLFQFEGHE 497 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s---~d~~v~iwd--~~~~~~~~~~~h~ 497 (1130)
.+..+..||.+.+|.+.. +.....+.|.....+..|-. . .+++++ .++.+.+|| ..+..-..-..|.
T Consensus 2265 k~~i~d~dg~l~l~q~~p----k~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~ 2336 (2439)
T KOG1064|consen 2265 KFGIVDGDGDLSLWQASP----KPYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHD 2336 (2439)
T ss_pred ceeeeccCCceeecccCC----cceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceeeeecC
Confidence 999999999999999873 34446788999999999986 3 466654 578999999 4443333337899
Q ss_pred cCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCC
Q 001184 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577 (1130)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1130)
+.++++++.|.. ++|++||.+|.|++||++..+.+..+.. +. ...++++++. .|.+.||++...
T Consensus 2337 ~gaT~l~~~P~~--qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss----~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2337 GGATVLAYAPKH--QLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSS----EGNIKIWRLSEF 2400 (2439)
T ss_pred CCceEEEEcCcc--eEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCc----ccceEEEEcccc
Confidence 999999997655 7999999999999999998777665543 23 4557777765 899999999988
Q ss_pred ceeEEEeccc
Q 001184 578 ALKRTYIGFR 587 (1130)
Q Consensus 578 ~~~~~~~~~~ 587 (1130)
..+.++...+
T Consensus 2401 ~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2401 GLLHTFPSEH 2410 (2439)
T ss_pred chhhcCchhh
Confidence 8877776543
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-09 Score=115.58 Aligned_cols=241 Identities=14% Similarity=0.249 Sum_probs=172.8
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCC-ccc---eeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCc
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGS-NDL---CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL 479 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~-~~~---~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~ 479 (1130)
.+.||...|..++--.+.+-+++++.|++|++|.++.. ..+ ....++..|+.+|.++.|..+-+ .++++ |+.
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~g 805 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGG 805 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCc
Confidence 47899999999988888889999999999999999642 222 24567889999999999999988 66666 899
Q ss_pred EEEEe-cCCCeeeEec-----CCCcCEEEEeecccCCccEEEEE-ecCCcEEEEEccCCcceeeec-----CCCccEEEE
Q 001184 480 IRVWD-LSGRKLFQFE-----GHEAPVYSVCPHQKENIHFIFST-AVDGKIKAWLYDNVGSRVDYD-----APGLWCTTM 547 (1130)
Q Consensus 480 v~iwd-~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~-----~~~~~v~~~ 547 (1130)
|++|| .-|+.+.... +..+.|.++ ++-+..+++.+ +...+|+++|.+..+-..++. +...-+.++
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl---~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCL---ENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEec---ccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence 99999 8887765432 222344444 33344555555 788999999998876554432 344568999
Q ss_pred EEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEE-EeCCCCceeEEE
Q 001184 548 LYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKF-WDMDNVNMLTST 626 (1130)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v-wd~~~~~~~~~~ 626 (1130)
+..+.|+.++++-. .|.|.+.|.++|+.+..+..... ....++ .|..+.++....|.++.+ |..-.+....+.
T Consensus 883 aVa~~GN~lAa~LS----nGci~~LDaR~G~vINswrpmec-dllqla-apsdq~L~~saldHslaVnWhaldgimh~q~ 956 (1034)
T KOG4190|consen 883 AVADKGNKLAAALS----NGCIAILDARNGKVINSWRPMEC-DLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQD 956 (1034)
T ss_pred EeccCcchhhHHhc----CCcEEEEecCCCceeccCCcccc-hhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeecc
Confidence 99999999998875 89999999999998877664332 122222 345567777778889988 988777665554
Q ss_pred eccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 627 EAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 627 ~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
+.+.. ..--...-|..++++...+.+.+|.-
T Consensus 957 kpppe----pahflqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 957 KPPPE----PAHFLQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred CCCCc----chhhhhccCceeEEeccCcEEEEEec
Confidence 43321 11111123667888888888888853
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.9e-08 Score=108.70 Aligned_cols=190 Identities=12% Similarity=0.208 Sum_probs=115.4
Q ss_pred EEEEEecCCCeEEEEEeC----cCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEE
Q 001184 351 VSMDFHPFHHTLLVVGCG----DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1130)
Q Consensus 351 ~~v~fspdg~~llasg~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 426 (1130)
+-..|+|... ++|+++- .|+|.||- ++|+.-+.. ...- .+++++|+|..-.||.
T Consensus 19 ti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~V-----------------t~P~---hatSLCWHpe~~vLa~ 76 (1416)
T KOG3617|consen 19 TISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDV-----------------TYPV---HATSLCWHPEEFVLAQ 76 (1416)
T ss_pred cccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCccc-----------------ccce---ehhhhccChHHHHHhh
Confidence 3447888887 6777653 47888884 456643311 1112 3667999999999999
Q ss_pred EeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCeee-EecCCC--cCEE
Q 001184 427 AFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLF-QFEGHE--APVY 501 (1130)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~~-~~~~h~--~~v~ 501 (1130)
|-.-|.+.+|...+.+.- .....|..+|..+.||++|. .++|+..-|.|.+|. ..|+... .+..|. ..++
T Consensus 77 gwe~g~~~v~~~~~~e~h---tv~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~lt 151 (1416)
T KOG3617|consen 77 GWEMGVSDVQKTNTTETH---TVVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLT 151 (1416)
T ss_pred ccccceeEEEecCCceee---eeccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEeeeccccccchhhhhHhhceee
Confidence 999999999998775422 23457999999999999999 899999999999998 3344321 111232 3344
Q ss_pred EEeecccCCcc------EEEEEecCCcEE-EEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeC
Q 001184 502 SVCPHQKENIH------FIFSTAVDGKIK-AWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE 574 (1130)
Q Consensus 502 ~~~~~~~~~~~------~l~s~s~dg~i~-vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1130)
-.||.-..++. ..+..+++..+- .++.+.......... .=.|+|..++.++. +|+|+-.|-
T Consensus 152 l~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~k--------sgv~~g~~F~~~~~----~GtVyyvdq 219 (1416)
T KOG3617|consen 152 LWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEK--------SGVPKGTEFLFAGK----SGTVYYVDQ 219 (1416)
T ss_pred EEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccc--------cCCCCCcEEEEEcC----CceEEEEcC
Confidence 44443333211 123334443332 333321111111110 11467777777775 788887773
Q ss_pred CCCcee
Q 001184 575 SEGALK 580 (1130)
Q Consensus 575 ~~~~~~ 580 (1130)
.|+..
T Consensus 220 -~g~~~ 224 (1416)
T KOG3617|consen 220 -NGRQR 224 (1416)
T ss_pred -CCcEE
Confidence 34433
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.01 E-value=2e-07 Score=116.88 Aligned_cols=257 Identities=11% Similarity=0.103 Sum_probs=158.9
Q ss_pred eEEEEecCCC-EEEEEe-CCeEEEEECCCceeEEEEeC--C------------CCCeEEEEEeCCCCcEEEEE-eCCCcE
Q 001184 837 PCVALSKNDS-YVMSAG-GGKVSLFNMMNFKVMTTFMS--P------------PPASTFLAFHPQDNNIIAIG-MEDSTI 899 (1130)
Q Consensus 837 ~~l~~s~dg~-~la~~~-dg~i~iwd~~~~~~~~~~~~--~------------~~~i~~l~~sp~~~~~lasg-~~dg~v 899 (1130)
..+++++++. ++++-. ++.|++||..+. .+..+.+ . -.....+++.+ ++..|+++ ..++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 5688987654 444444 688999998654 3433332 1 12357899998 55555444 455789
Q ss_pred EEEEeecCeEEEEEecC-----------------CCCeeEEEEcc-CCCeEEEEeCCCcEEEEECCCCcccceee---Ee
Q 001184 900 QIYNVRVDEVKTKLKGH-----------------QKHITGLAFST-NLNILVSSGSDAQLIFWNTDTWEKRKSIA---IQ 958 (1130)
Q Consensus 900 ~iwd~~~~~~~~~l~~h-----------------~~~V~~l~~s~-dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~---~~ 958 (1130)
+++|..++.. .++.+- -..-+.++++| ++..+++.+.++.|++||..++....... ..
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 9999887653 333210 11236799999 55666777788999999988754321000 00
Q ss_pred ccCC-----CCCCCeEEEEEcCCCcEEEE--EcCCcEEEEECCCceeeeeeec-------------CCC-----CCCCeE
Q 001184 959 LPAG-----KLPVGETRVQFHSDQVRLLV--NHETQLAIYDGSKMECIRQWVP-------------QDV-----LSSPIS 1013 (1130)
Q Consensus 959 ~~~~-----~~~~~v~~~~~s~d~~~l~~--~~d~~i~v~d~~~~~~~~~~~~-------------~~~-----~~~~v~ 1013 (1130)
...+ ..-.....++++|++..|++ +.++.|++||+.++.......+ ..+ .-..-.
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 0000 01134567999999986655 4578999999987653211100 000 011336
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCc--ccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 001184 1014 SAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSA--YMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIE 1091 (1130)
Q Consensus 1014 ~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~ 1091 (1130)
+++++++|.++++-+.+++|++||..++.......... +.......+.-..+..+++++ +++++++-+.+++|++||
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence 89999999988888889999999998877553322110 000000011112455677777 578899988999999999
Q ss_pred CCCCcc
Q 001184 1092 PSETER 1097 (1130)
Q Consensus 1092 ~~~~~~ 1097 (1130)
+.+++.
T Consensus 887 ~~~~~~ 892 (1057)
T PLN02919 887 LNKGEA 892 (1057)
T ss_pred CCCCcc
Confidence 988764
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.3e-08 Score=94.19 Aligned_cols=192 Identities=18% Similarity=0.101 Sum_probs=135.4
Q ss_pred CCCCEEEEEEec---CCCeEEEEEeCcCeEEEEeCCCCceeec-ccceeeeccccccceeeeeecCCCccEEEEEEcCCC
Q 001184 346 QGSSVVSMDFHP---FHHTLLVVGCGDGEITLWDVGLRERLVS-KPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1130)
Q Consensus 346 h~~~V~~v~fsp---dg~~llasg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 421 (1130)
....+..+.|+- +|...++-+-.+|.|.++.....+.... .++.. .+-......++.|++-+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~--------------~ki~~~~~lslD~~~~~ 133 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS--------------KKISVVEALSLDISTSG 133 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccch--------------hhhhheeeeEEEeeccC
Confidence 445666677763 3443456666778888887654332210 01100 00001124578899999
Q ss_pred CEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCeeeE-ecCCCc
Q 001184 422 NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQ-FEGHEA 498 (1130)
Q Consensus 422 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~~~-~~~h~~ 498 (1130)
..++++..+|.+.+-+..... +.....+++|....+-+.|+..... ++.+||+|+.+..|| ..++.+.. .+-|..
T Consensus 134 ~~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~ 211 (339)
T KOG0280|consen 134 TKIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS 211 (339)
T ss_pred ceEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeec
Confidence 999999999999855544432 3344468899999999999987766 799999999999999 35566554 567999
Q ss_pred CEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCC
Q 001184 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGS 554 (1130)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 554 (1130)
.|.++.-++ +.+.++++|+.|-.|++||.++......-....+.|..+..+|.-.
T Consensus 212 GV~SI~ss~-~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 212 GVVSIYSSP-PKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIF 266 (339)
T ss_pred ceEEEecCC-CCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhh
Confidence 999997655 4568999999999999999997666655555567899999998543
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.4e-09 Score=114.62 Aligned_cols=283 Identities=13% Similarity=0.245 Sum_probs=186.8
Q ss_pred ccCCcccccccCCCC-CcccccCC-------cccceeeeccCCC--CEEEEEEecCCCe-EEEEEeCcCeEEEEeCCCCc
Q 001184 313 ASQSVDEATYPVPSQ-QATWSLDD-------LPRAVACTMHQGS--SVVSMDFHPFHHT-LLVVGCGDGEITLWDVGLRE 381 (1130)
Q Consensus 313 ~~~~~~~~~~s~~~~-~~~~~~~~-------~~~~~~~~~~h~~--~V~~v~fspdg~~-llasg~~dg~i~iwd~~~~~ 381 (1130)
..+.+.++.++|-|. ++..+..+ .|....+.++|-. .|-.+.|||.-.+ +-++......-.||++....
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 345677788888775 33333322 2555556666544 6778889875421 23334445567889886433
Q ss_pred eeecccceeeeccccccceeeeeecCCCccEEEEEEcCC-CCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEE
Q 001184 382 RLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD-GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDL 460 (1130)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i 460 (1130)
-.. ..-++.||..+|+.+.|.|. ...||+++.|-.+..||+.+... .......-..+-..+
T Consensus 103 ~~a----------------Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--p~ys~~~w~s~asqV 164 (1081)
T KOG0309|consen 103 SNA----------------IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--PFYSTSSWRSAASQV 164 (1081)
T ss_pred ccc----------------eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc--ceeeeecccccCcee
Confidence 221 11157899999999999995 45899999999999999988643 233344444557789
Q ss_pred EEecCCCceEEEEEcCCCcEEEEe--cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeec
Q 001184 461 AFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD 538 (1130)
Q Consensus 461 ~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 538 (1130)
+|+--.. .+.+.+..+.|++|| ..+.++..+++|...|+.+.|..... ..+.+.+.||+|+.||.+.........
T Consensus 165 kwnyk~p--~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~ 241 (1081)
T KOG0309|consen 165 KWNYKDP--NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRT 241 (1081)
T ss_pred eecccCc--chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeeccccccccccee
Confidence 9987666 466667778899999 55678899999999999998865433 467899999999999998765554332
Q ss_pred -CCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeC---------CC-CceeEEEecccCceeEEEEE--------cCC
Q 001184 539 -APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE---------SE-GALKRTYIGFRKKSAGVVQF--------DTT 599 (1130)
Q Consensus 539 -~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~---------~~-~~~~~~~~~~~~~~v~~~~~--------~~~ 599 (1130)
....++..-.+.|-|.-...--. .++..+.+++. .+ .+.+..|.||.+ .|...-| .-+
T Consensus 242 vtt~~piw~~r~~Pfg~g~~~mp~--~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d 318 (1081)
T KOG0309|consen 242 VTTNFPIWRGRYLPFGEGYCIMPM--VGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYD 318 (1081)
T ss_pred ccccCcceeccccccCceeEeccc--cCCeeeeeccccchhhhhccccCCcceeeecCcch-HHHHHhhhhcccccCCCC
Confidence 33446666677775543332211 12334444333 22 457889999877 3332222 222
Q ss_pred C--CEEEEEeCCCcEEEEeCCC
Q 001184 600 R--NRILAAGEDNQIKFWDMDN 619 (1130)
Q Consensus 600 ~--~~l~~~~~dg~i~vwd~~~ 619 (1130)
. -.|++-+.|..+++|-+.+
T Consensus 319 ~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 319 SRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ccceeEEEeecCCceEeeeccH
Confidence 2 2699999999999998754
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.4e-09 Score=128.42 Aligned_cols=202 Identities=13% Similarity=0.217 Sum_probs=164.6
Q ss_pred ecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001184 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1130)
Q Consensus 405 ~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd 484 (1130)
++.|-..|.++.=+|-..+-++|+.||.|++|....+..+....+ .|. ..|+.+.|+.+|. .+..+..||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt-~g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT-AGN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec-cCc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence 445667788888899889999999999999999998877654433 233 8899999999999 688888999999999
Q ss_pred cCCCeeeEecCCCcCEEEEeecccCCccEEEEEe---cCCcEEEEEccCCcc-eeeecCCCccEEEEEEecCCCeEEEee
Q 001184 485 LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA---VDGKIKAWLYDNVGS-RVDYDAPGLWCTTMLYSADGSRLFSCG 560 (1130)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1130)
...+.....+.|......+.|-. ..+++++ .++.+.+||.-.... -.....|.+.++++++.|..+.|++||
T Consensus 2280 ~~pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2280 ASPKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred cCCcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC
Confidence 88888888888999888888754 3466653 568899999754333 234477888999999999999999999
Q ss_pred ecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEecc
Q 001184 561 TSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE 629 (1130)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 629 (1130)
. +|.|++||++..++++.++. +. ...++++|+..|.++||++..-..+..+...
T Consensus 2356 r----~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2356 R----KGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred C----cCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCchh
Confidence 7 99999999999888877664 33 4578999999999999999988777766543
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.1e-09 Score=110.64 Aligned_cols=288 Identities=11% Similarity=0.121 Sum_probs=182.8
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCC-ceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCC
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLR-ERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 422 (1130)
.+|...|..++--.+.+. +++++.|.+|++|.+... ..+..... +-++..|+.+|..+.|-.|-+
T Consensus 732 ~GH~~~iRai~AidNENS-FiSASkDKTVKLWSik~EgD~~~tsaC-------------QfTY~aHkk~i~~igfL~~lr 797 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENS-FISASKDKTVKLWSIKPEGDEIGTSAC-------------QFTYQAHKKPIHDIGFLADLR 797 (1034)
T ss_pred cCcHHHhHHHHhcccccc-eeeccCCceEEEEEeccccCcccccee-------------eeEhhhccCcccceeeeeccc
Confidence 469999999865555543 789999999999998642 22211111 115779999999999999999
Q ss_pred EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecC-CCceEEEEEcCCCcEEEEe-cCCCeeeEec-----C
Q 001184 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP-NKQLCIVTCGDDKLIRVWD-LSGRKLFQFE-----G 495 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d-~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~-----~ 495 (1130)
+++++ ||-|++||.--|..+.+...-. ..+.+..+...++ .+.++++.|+...+|+++| ..++....++ +
T Consensus 798 ~i~Sc--D~giHlWDPFigr~Laq~~dap-k~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~ 874 (1034)
T KOG4190|consen 798 SIASC--DGGIHLWDPFIGRLLAQMEDAP-KEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPG 874 (1034)
T ss_pred eeeec--cCcceeecccccchhHhhhcCc-ccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCC
Confidence 99876 7889999987776655432222 2334455555554 4444556668899999999 7777766654 3
Q ss_pred CCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEE-eeC
Q 001184 496 HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE-WNE 574 (1130)
Q Consensus 496 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~-wd~ 574 (1130)
..+-+.++++.+ .|+.++.+-.+|+|.+.|.+++..+-.+.........++ .|..+.++.... +.++.+ |..
T Consensus 875 Pna~~R~iaVa~--~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sal----dHslaVnWha 947 (1034)
T KOG4190|consen 875 PNALTRAIAVAD--KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSAL----DHSLAVNWHA 947 (1034)
T ss_pred CchheeEEEecc--CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcc----cceeEeeehh
Confidence 445678888754 457899999999999999998776554433322222222 234444554433 666766 876
Q ss_pred CCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCC----CceeEEEeccCCCCCcceEEEcCCCCEEEEE
Q 001184 575 SEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN----VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVT 650 (1130)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~ 650 (1130)
..|........... + +-....-|..++++.....+.+|.-.. ...+..+....-.+..++++.-|-..-+..|
T Consensus 948 ldgimh~q~kpppe-p--ahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaG 1024 (1034)
T KOG4190|consen 948 LDGIMHLQDKPPPE-P--AHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAG 1024 (1034)
T ss_pred cCCeeeeccCCCCc-c--hhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhcc
Confidence 66655444332211 1 111222356677777777788874221 1222333333333356778887866666678
Q ss_pred eCCCcEEE
Q 001184 651 TADQGIKI 658 (1130)
Q Consensus 651 ~~dg~i~i 658 (1130)
...|.|.+
T Consensus 1025 ne~G~IaL 1032 (1034)
T KOG4190|consen 1025 NEHGAIAL 1032 (1034)
T ss_pred CCCCceee
Confidence 88888765
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-07 Score=93.61 Aligned_cols=201 Identities=13% Similarity=0.131 Sum_probs=140.1
Q ss_pred eeEEEEecCCCEEEEEe-CCeEEEEECCCceeEE--EEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEee-cCeEEE
Q 001184 836 VPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMT--TFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR-VDEVKT 911 (1130)
Q Consensus 836 i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~-~~~~~~ 911 (1130)
..++.|++.+.-++++. +|.+.+-+........ ..+.|.-++..+.|+..+..++.+|++|+.+..||++ .++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 45778888888888876 7888866665554444 7889999999999998788899999999999999998 445554
Q ss_pred E-EecCCCCeeEEEEcc-CCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCc--EEEEEcCCc
Q 001184 912 K-LKGHQKHITGLAFST-NLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV--RLLVNHETQ 987 (1130)
Q Consensus 912 ~-l~~h~~~V~~l~~s~-dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~~~~d~~ 987 (1130)
. -+.|...|.++.-+| ++.++++|+.|..|++||..+-.+ .+......++|..+..+|.-. .|+++--+.
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k------Pl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G 277 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK------PLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG 277 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC------ccccCccccceEEEEecchhhhHHHHHHHhcC
Confidence 4 567889999998886 467999999999999999985221 112222337899999998644 444454455
Q ss_pred EEEEECCCceee--eeeecCCCCCCCeEEEEECCCCCEEEEEe-CCCcEE-EEeCCCcc
Q 001184 988 LAIYDGSKMECI--RQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIG-VFDADSLR 1042 (1130)
Q Consensus 988 i~v~d~~~~~~~--~~~~~~~~~~~~v~~v~~s~dg~~l~t~~-~Dg~i~-vwd~~~~~ 1042 (1130)
.+|.+...+..- ..+..+..|.+-++.-.|.....+|||++ .|+.++ +|-..+++
T Consensus 278 ~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 278 AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 666665543221 12233333355555555644445788866 577755 78655554
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.4e-07 Score=111.93 Aligned_cols=257 Identities=11% Similarity=0.134 Sum_probs=158.4
Q ss_pred EEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEe-C
Q 001184 351 VSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF-T 429 (1130)
Q Consensus 351 ~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~-~ 429 (1130)
..+++++++..++++-+.++.|++||... ..+.... ............-..+-.....+++++++..|.++. .
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig-----~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIG-----STGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEc-----cCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence 46889986555778778889999999864 3332100 000000000000011223467899999988766654 4
Q ss_pred CCeEEEEEecCCccceeeee-------eecC-------CCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecC
Q 001184 430 KHLIHLYTYQGSNDLCQSLE-------IDAH-------VGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEG 495 (1130)
Q Consensus 430 d~~i~vwd~~~~~~~~~~~~-------~~~h-------~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~ 495 (1130)
++.|+++|..++. +..... ..+. -..-+.++|+|++.. ++++.+.++.|++||.....+..+.+
T Consensus 645 n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~-LyVad~~~~~I~v~d~~~g~v~~~~G 722 (1057)
T PLN02919 645 NHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEK-VYIAMAGQHQIWEYNISDGVTRVFSG 722 (1057)
T ss_pred CceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCe-EEEEECCCCeEEEEECCCCeEEEEec
Confidence 5789999987754 221100 0000 112468999995443 67788889999999944444444332
Q ss_pred C---------------CcCEEEEeecccCCcc-EEEEEecCCcEEEEEccCCcceeeec-------------CC------
Q 001184 496 H---------------EAPVYSVCPHQKENIH-FIFSTAVDGKIKAWLYDNVGSRVDYD-------------AP------ 540 (1130)
Q Consensus 496 h---------------~~~v~~~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~-------------~~------ 540 (1130)
. -.....+++++ ++. ++++.+.+++|++||++++....... ..
T Consensus 723 ~G~~~~~~g~~~~~~~~~~P~GIavsp--dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~ 800 (1057)
T PLN02919 723 DGYERNLNGSSGTSTSFAQPSGISLSP--DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE 800 (1057)
T ss_pred CCccccCCCCccccccccCccEEEEeC--CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence 1 12234577754 444 55666778999999998654322110 00
Q ss_pred --CccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEeccc-------------CceeEEEEEcCCCCEEEE
Q 001184 541 --GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR-------------KKSAGVVQFDTTRNRILA 605 (1130)
Q Consensus 541 --~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~~ 605 (1130)
-.....++++++|+.+++... ++.|++||..++...... +.. -.....++++++|+.+++
T Consensus 801 ~~l~~P~Gvavd~dG~LYVADs~----N~rIrviD~~tg~v~tia-G~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 801 VLLQHPLGVLCAKDGQIYVADSY----NHKIKKLDPATKRVTTLA-GTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred hhccCCceeeEeCCCcEEEEECC----CCEEEEEECCCCeEEEEe-ccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 012468899999987666653 889999999877654332 211 013556899999998888
Q ss_pred EeCCCcEEEEeCCCCce
Q 001184 606 AGEDNQIKFWDMDNVNM 622 (1130)
Q Consensus 606 ~~~dg~i~vwd~~~~~~ 622 (1130)
-+.++.|++||+.+++.
T Consensus 876 Dt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 876 DTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCcc
Confidence 88999999999998765
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.2e-07 Score=103.24 Aligned_cols=259 Identities=12% Similarity=0.095 Sum_probs=158.7
Q ss_pred CCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEE-EEEcCCCCEEEEEeCCCeEEEE
Q 001184 358 FHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSR-VAWSPDGNFIGVAFTKHLIHLY 436 (1130)
Q Consensus 358 dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-v~~spdg~~las~~~d~~i~vw 436 (1130)
++.. ++.++.+|.+..+|..+|+.+-...+ .+.+.+ ... .+..++.++.++.+..|
T Consensus 104 ~~~~-v~v~~~~g~l~ald~~tG~~~W~~~~--------------------~~~~~~~p~v--~~~~v~v~~~~g~l~a~ 160 (377)
T TIGR03300 104 DGGL-VFVGTEKGEVIALDAEDGKELWRAKL--------------------SSEVLSPPLV--ANGLVVVRTNDGRLTAL 160 (377)
T ss_pred cCCE-EEEEcCCCEEEEEECCCCcEeeeecc--------------------CceeecCCEE--ECCEEEEECCCCeEEEE
Confidence 3443 67788899999999999987642111 111111 111 34567777789999999
Q ss_pred EecCCccceeeeeeecCCCCe-----eEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCc-------CEEEE
Q 001184 437 TYQGSNDLCQSLEIDAHVGGV-----NDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA-------PVYSV 503 (1130)
Q Consensus 437 d~~~~~~~~~~~~~~~h~~~V-----~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~-------~v~~~ 503 (1130)
|.++|+.+... ......+ ...... + . .++.+..++.+..+| .+|+.+........ ....+
T Consensus 161 d~~tG~~~W~~---~~~~~~~~~~~~~sp~~~-~-~--~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~ 233 (377)
T TIGR03300 161 DAATGERLWTY---SRVTPALTLRGSASPVIA-D-G--GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDV 233 (377)
T ss_pred EcCCCceeeEE---ccCCCceeecCCCCCEEE-C-C--EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhcc
Confidence 99998765422 1111111 111222 2 3 467788889999999 78887655431100 00011
Q ss_pred eecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEE
Q 001184 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1130)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1130)
.-.|.-.+..++.++.+|.+..||.++++......... .... ..++..++++.. ++.|+.+|..+++.+...
T Consensus 234 ~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~--~~~p--~~~~~~vyv~~~----~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 234 DGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS--YQGP--AVDDNRLYVTDA----DGVVVALDRRSGSELWKN 305 (377)
T ss_pred CCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC--ccCc--eEeCCEEEEECC----CCeEEEEECCCCcEEEcc
Confidence 11111123578888899999999999887766554221 1112 234566666653 899999999999877655
Q ss_pred ecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEE
Q 001184 584 IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659 (1130)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw 659 (1130)
............. .++.+++++.+|.|+++|..+++.+..++.+... -.....+. +..|++++.||.|..+
T Consensus 306 ~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~-~~~sp~~~--~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 306 DELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSG-IASPPVVV--GDGLLVQTRDGDLYAF 376 (377)
T ss_pred ccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCc-cccCCEEE--CCEEEEEeCCceEEEe
Confidence 3222212222222 3678999999999999999999999888765421 11222222 3458889999998765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.3e-07 Score=101.74 Aligned_cols=197 Identities=13% Similarity=-0.012 Sum_probs=120.6
Q ss_pred CCEEEEEEecCCCeEEEEEeC---cCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 348 SSVVSMDFHPFHHTLLVVGCG---DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 348 ~~V~~v~fspdg~~llasg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
..+..-.|||||+++++..+. +..|.++|+.+|+... +....+.+...+|||||+.|
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~~~~SPDG~~l 247 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVVSDVSKDGSKL 247 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEeeEECCCCCEE
Confidence 377889999999863443332 3569999998887653 22344556678899999987
Q ss_pred EEEeC---CCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCC--cEEEEecCCCeeeEecCCCcC
Q 001184 425 GVAFT---KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK--LIRVWDLSGRKLFQFEGHEAP 499 (1130)
Q Consensus 425 as~~~---d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~--~v~iwd~~~~~~~~~~~h~~~ 499 (1130)
+.... +..|.++|+.+++. ++ +..+.+......|+|||+.++ ++....+ .|.+.|..+.....+......
T Consensus 248 a~~~~~~g~~~Iy~~dl~~g~~-~~---LT~~~~~d~~p~~SPDG~~I~-F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~ 322 (419)
T PRK04043 248 LLTMAPKGQPDIYLYDTNTKTL-TQ---ITNYPGIDVNGNFVEDDKRIV-FVSDRLGYPNIFMKKLNSGSVEQVVFHGKN 322 (419)
T ss_pred EEEEccCCCcEEEEEECCCCcE-EE---cccCCCccCccEECCCCCEEE-EEECCCCCceEEEEECCCCCeEeCccCCCc
Confidence 76532 35688888877753 22 333443344568999999643 3333334 577777444444333322111
Q ss_pred EEEEeecccCCccEEEEEecC---------CcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEE
Q 001184 500 VYSVCPHQKENIHFIFSTAVD---------GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLV 570 (1130)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~d---------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1130)
...|+ ++|+.|+..+.. ..|.+.|++.+.... +... .......|+|||+.++..... .+...+.
T Consensus 323 --~~~~S--PDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~~-~~~~~L~ 395 (419)
T PRK04043 323 --NSSVS--TYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKYL-GNQSALG 395 (419)
T ss_pred --CceEC--CCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEcc-CCcEEEE
Confidence 23554 556666655543 256777877665433 3322 223468899999999887643 3355677
Q ss_pred EeeCCC
Q 001184 571 EWNESE 576 (1130)
Q Consensus 571 ~wd~~~ 576 (1130)
+.++..
T Consensus 396 ~~~l~g 401 (419)
T PRK04043 396 IIRLNY 401 (419)
T ss_pred EEecCC
Confidence 777654
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.1e-06 Score=85.44 Aligned_cols=210 Identities=18% Similarity=0.188 Sum_probs=140.7
Q ss_pred EEEEecCCCEEEEEeCCeEEEEECCCc--eeEEEE---eCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEE
Q 001184 838 CVALSKNDSYVMSAGGGKVSLFNMMNF--KVMTTF---MSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK 912 (1130)
Q Consensus 838 ~l~~s~dg~~la~~~dg~i~iwd~~~~--~~~~~~---~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 912 (1130)
.++.+.||++||+-.|..|.|=..++. .++... +.....-+.++||| |+.+||.+...|+|++||+....+. .
T Consensus 2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~lf-~ 79 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSELF-V 79 (282)
T ss_pred ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccceeE-E
Confidence 367889999999999999888766542 222222 23345578899999 9999999999999999999864432 3
Q ss_pred Eec-C------CCCeeEEEEccC------CCeEEEEeCCCcEEEEECCCC--cccceeeEeccCCCCCCCeEEEEEcCCC
Q 001184 913 LKG-H------QKHITGLAFSTN------LNILVSSGSDAQLIFWNTDTW--EKRKSIAIQLPAGKLPVGETRVQFHSDQ 977 (1130)
Q Consensus 913 l~~-h------~~~V~~l~~s~d------g~~L~s~s~Dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 977 (1130)
+.. + ...|.+|.|.+- ...|++...+|.++=|-+..+ +.-.....-....+.+.+|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 321 1 245777777543 225677777888877766432 1111111122233455799999999999
Q ss_pred cEEEEEc-----C-------CcEEEEECCCceeeee--------------------------eecCCCCCCCeEEEEECC
Q 001184 978 VRLLVNH-----E-------TQLAIYDGSKMECIRQ--------------------------WVPQDVLSSPISSAAYSC 1019 (1130)
Q Consensus 978 ~~l~~~~-----d-------~~i~v~d~~~~~~~~~--------------------------~~~~~~~~~~v~~v~~s~ 1019 (1130)
++|+++. + -.+..|.+-++.+... +.........|..|..||
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP 239 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP 239 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECC
Confidence 9888741 1 1355665433221111 000111256899999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCcccccccCC
Q 001184 1020 NSQLIYATFTDGSIGVFDADSLRLRCRIAP 1049 (1130)
Q Consensus 1020 dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1049 (1130)
||+.||+...+|.|.+|++.+.++......
T Consensus 240 dg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 240 DGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred CCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 999999999999999999999888776653
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.7e-08 Score=101.60 Aligned_cols=167 Identities=17% Similarity=0.124 Sum_probs=111.1
Q ss_pred CEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEe
Q 001184 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF 428 (1130)
Q Consensus 349 ~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~ 428 (1130)
.+..+.++|.++ +||++..+....++++..... ..+.++.. ....-..+++.+..+......-..+
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~----~~kl~~~~---------~v~~~~~ai~~~~~~~sv~v~dkag 129 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPK----GAKLLDVS---------CVPKRPTAISFIREDTSVLVADKAG 129 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCC----cceeeeEe---------ecccCcceeeeeeccceEEEEeecC
Confidence 455667788887 688887777766777654332 11222111 1112223344444333333333344
Q ss_pred CCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEe-cCCCcCEEEEeec
Q 001184 429 TKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQF-EGHEAPVYSVCPH 506 (1130)
Q Consensus 429 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~-~~h~~~v~~~~~~ 506 (1130)
....+.+|....+.+. .+-||-..+++++|+||++ +++++..|..|+|-. ..-..+..| -||+.-|..++..
T Consensus 130 D~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~ 203 (390)
T KOG3914|consen 130 DVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT 203 (390)
T ss_pred CceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeeeeec
Confidence 5556666766654433 3568999999999999999 899999999999987 444444443 4899999999874
Q ss_pred ccCCccEEEEEecCCcEEEEEccCCcceeeec
Q 001184 507 QKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD 538 (1130)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 538 (1130)
+ +..|+++|.|+++++||+.++.....+.
T Consensus 204 ~---~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 204 D---NYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred c---CceeeecCCCCcEEEEecccCCcccccc
Confidence 3 3568999999999999999988775443
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.82 E-value=0.00084 Score=78.11 Aligned_cols=622 Identities=12% Similarity=0.103 Sum_probs=302.8
Q ss_pred EEEecCCCeEEEEEeCcCeEEEEeCC-CCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCC
Q 001184 353 MDFHPFHHTLLVVGCGDGEITLWDVG-LRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKH 431 (1130)
Q Consensus 353 v~fspdg~~llasg~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~ 431 (1130)
-..+++|.+ ...|..+|.+...-+. +++......+++ .+-+...-..|+..-++| .|.+|+.-|
T Consensus 263 ~~v~~~~~~-yLl~d~~G~Lf~l~l~~~~e~~s~~~lkv-------------e~lge~siassi~~L~ng-~lFvGS~~g 327 (1096)
T KOG1897|consen 263 GRVDLQGSR-YLLGDEDGMLFKLLLSHTGETVSGLDLKV-------------EYLGETSIASSINYLDNG-VLFVGSRFG 327 (1096)
T ss_pred ccccCCccE-EEEecCCCcEEEEEeecccccccceEEEE-------------EecCCcchhhhhhcccCc-eEEEeccCC
Confidence 345667775 5567788887766555 555443211111 123555566777777776 666777666
Q ss_pred eEEEEEecCCccc----eeeeeeecCCCCeeEEEEecCC---CceEEEEEc---CCCcEEEEe--cC--CCeeeEecCCC
Q 001184 432 LIHLYTYQGSNDL----CQSLEIDAHVGGVNDLAFSYPN---KQLCIVTCG---DDKLIRVWD--LS--GRKLFQFEGHE 497 (1130)
Q Consensus 432 ~i~vwd~~~~~~~----~~~~~~~~h~~~V~~i~~s~d~---~~l~l~s~s---~d~~v~iwd--~~--~~~~~~~~~h~ 497 (1130)
.=.+-.+.+.... ....++ ..-++|.+++.-... +. -++||+ .||++|+.. .. .-....+.| -
T Consensus 328 dSqLi~L~~e~d~gsy~~ilet~-~NLgPI~Dm~Vvd~d~q~q~-qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-i 404 (1096)
T KOG1897|consen 328 DSQLIKLNTEPDVGSYVVILETF-VNLGPIVDMCVVDLDRQGQG-QIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-I 404 (1096)
T ss_pred ceeeEEccccCCCCchhhhhhhc-ccccceeeEEEEeccccCCc-eEEEEeCCCCCCcEEEEecccccceeeEeecCC-c
Confidence 5455555442221 000111 234578888776533 22 456654 589999987 22 222334445 3
Q ss_pred cCEEEEe--ecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEec-CCCeEEEeeecCCCCcEEEEeeC
Q 001184 498 APVYSVC--PHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSA-DGSRLFSCGTSKEGDSHLVEWNE 574 (1130)
Q Consensus 498 ~~v~~~~--~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~ 574 (1130)
..++.+. +.++.+. +|+.+--+.+ ++..+...-......+-......+..+. .|+.|+-.. ...|++++-
T Consensus 405 kg~w~lk~~v~~~~d~-ylvlsf~~eT-rvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT-----s~~iRl~ss 477 (1096)
T KOG1897|consen 405 KGMWSLKSMVDENYDN-YLVLSFISET-RVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVT-----SNSIRLVSS 477 (1096)
T ss_pred cceeEeeccccccCCc-EEEEEeccce-EEEEEccceEEeccccccccCceEEEEccCCceEEEEe-----cccEEEEcc
Confidence 4566666 5555554 4433322222 2333322211111111111122222221 333333332 446777774
Q ss_pred CCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCC--C----CEEE
Q 001184 575 SEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE--G----NLLV 648 (1130)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~--~----~~l~ 648 (1130)
. .....+.... .+++...+.+...++.++.++.+...++..+. +.....+.-...|.|+.++|- + ++++
T Consensus 478 ~--~~~~~W~~p~--~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~a 552 (1096)
T KOG1897|consen 478 A--GLRSEWRPPG--KITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLA 552 (1096)
T ss_pred h--hhhhcccCCC--ceEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEE
Confidence 4 2223333222 23333444455577777777777777776665 333333333346889999873 2 3788
Q ss_pred EEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCC
Q 001184 649 VTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGI 728 (1130)
Q Consensus 649 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1130)
+|..+..+.+.-...........+... ..-|. +-++ .....+
T Consensus 553 VG~Ws~~~~~l~~~pd~~~~~~~~l~~-------------------~~iPR---------------SIl~----~~~e~d 594 (1096)
T KOG1897|consen 553 VGLWSDISMILTFLPDLILITHEQLSG-------------------EIIPR---------------SILL----TTFEGD 594 (1096)
T ss_pred EEeecceEEEEEECCCcceeeeeccCC-------------------Cccch---------------heee----EEeecc
Confidence 887766655543322211111100000 00010 0011 011123
Q ss_pred CCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccc
Q 001184 729 EKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKAT 808 (1130)
Q Consensus 729 ~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 808 (1130)
..++.++..||.+..|.++...-...... ...-...++.--.|+..++.-+.+.+|.=..+|..
T Consensus 595 ~~yLlvalgdG~l~~fv~d~~tg~lsd~K----k~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~------------ 658 (1096)
T KOG1897|consen 595 IHYLLVALGDGALLYFVLDINTGQLSDRK----KVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSS------------ 658 (1096)
T ss_pred ceEEEEEcCCceEEEEEEEcccceEcccc----ccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEec------------
Confidence 56677777788877776654221000000 00012233344445544444444444433333321
Q ss_pred cccccccccCCCCcceeccCCCCCCCceeE-EEEe--cCCCEEEEEeCCeEEEEECCCcee--EEEEeCCCCCeEEEEEe
Q 001184 809 AAVAPQHWQPSNGLLMTNDVPENAEDVVPC-VALS--KNDSYVMSAGGGKVSLFNMMNFKV--MTTFMSPPPASTFLAFH 883 (1130)
Q Consensus 809 ~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~-l~~s--~dg~~la~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s 883 (1130)
++++....+. -..+.. +.|+ .-...++++..+.+++.-+..-+. +++... ......+++.
T Consensus 659 -----------n~kLv~spls---~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl-~~~prrI~~q 723 (1096)
T KOG1897|consen 659 -----------NGKLVYSPLS---LKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPL-GESPRRICYQ 723 (1096)
T ss_pred -----------CCcEEEeccc---hHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecC-CCChhheEec
Confidence 1122211110 011111 1122 223466777777777776554322 233322 2335556666
Q ss_pred CCCCcEEEEEeCC-----------C---cEEEEEeecCeEEEEEec----CCCCeeEEEEccC-CCeEEEEeC-------
Q 001184 884 PQDNNIIAIGMED-----------S---TIQIYNVRVDEVKTKLKG----HQKHITGLAFSTN-LNILVSSGS------- 937 (1130)
Q Consensus 884 p~~~~~lasg~~d-----------g---~v~iwd~~~~~~~~~l~~----h~~~V~~l~~s~d-g~~L~s~s~------- 937 (1130)
+ ...++++.+.- . .++++|-++-+.+...+- -...|.+..|..| +.++++|..
T Consensus 724 ~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ 802 (1096)
T KOG1897|consen 724 E-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDEN 802 (1096)
T ss_pred c-cceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCC
Confidence 5 34444433321 1 255666555444332211 0123455568877 677777764
Q ss_pred ---CCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEE
Q 001184 938 ---DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISS 1014 (1130)
Q Consensus 938 ---Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~ 1014 (1130)
.|.|.++............-.. ......+.-.-...++++-+..+++|++.+.+.++.- ..+..++..
T Consensus 803 ep~~GRIivfe~~e~~~L~~v~e~~------v~Gav~aL~~fngkllA~In~~vrLye~t~~~eLr~e---~~~~~~~~a 873 (1096)
T KOG1897|consen 803 EPVNGRIIVFEFEELNSLELVAETV------VKGAVYALVEFNGKLLAGINQSVRLYEWTTERELRIE---CNISNPIIA 873 (1096)
T ss_pred CcccceEEEEEEecCCceeeeeeee------eccceeehhhhCCeEEEecCcEEEEEEccccceehhh---hcccCCeEE
Confidence 4778888877622211111100 1112233333344566677789999999988554443 334678999
Q ss_pred EEECCCCCEEEEEeCCCcEEEEeCC--CcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 001184 1015 AAYSCNSQLIYATFTDGSIGVFDAD--SLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEP 1092 (1130)
Q Consensus 1015 v~~s~dg~~l~t~~~Dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~ 1092 (1130)
+...-.|..+++|..=+++.+-... .|.+....+ .+ ++ .+.+++..- +.+.++-+..+|.+++-..
T Consensus 874 L~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evAr--D~------~p--~Wmtaveil--~~d~ylgae~~gNlf~v~~ 941 (1096)
T KOG1897|consen 874 LDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVAR--DY------NP--NWMTAVEIL--DDDTYLGAENSGNLFTVRK 941 (1096)
T ss_pred EEEEecCcEEEEeeccceEEEEEEeccCCceEEeeh--hh------Cc--cceeeEEEe--cCceEEeecccccEEEEEe
Confidence 9999999999999977776665444 433432222 22 22 223333332 3456777788999988877
Q ss_pred CCC
Q 001184 1093 SET 1095 (1130)
Q Consensus 1093 ~~~ 1095 (1130)
.+.
T Consensus 942 d~~ 944 (1096)
T KOG1897|consen 942 DSD 944 (1096)
T ss_pred cCC
Confidence 643
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.8e-06 Score=91.23 Aligned_cols=226 Identities=15% Similarity=0.162 Sum_probs=140.9
Q ss_pred CCeEEEEECCCceeEEEEeCCC--CCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCC
Q 001184 853 GGKVSLFNMMNFKVMTTFMSPP--PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLN 930 (1130)
Q Consensus 853 dg~i~iwd~~~~~~~~~~~~~~--~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~ 930 (1130)
+|+|..||..+++.+....... ....+.. .+ ++..+++++.++.|+.||..+|+.+-++.. .+.+.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~-~~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATA-VP-DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETE-EE-ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceE-EE-eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence 5889999999999998886421 2222222 32 344566678999999999999999877765 23222212 23456
Q ss_pred eEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE-EcCCcEEEEECCCceeeeeeecCCCCC
Q 001184 931 ILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGSKMECIRQWVPQDVLS 1009 (1130)
Q Consensus 931 ~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~ 1009 (1130)
.++.++.|+.++.+|..+++..-......... . ..........++..+++ ..++.+..+|+++|+.+..........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPP-A-GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCT-C-STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred ccccccceeeeEecccCCcceeeeeccccccc-c-ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 77777788899999999988654421111111 1 11122222223555555 559999999999999988876643111
Q ss_pred -CC------eEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEe
Q 001184 1010 -SP------ISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGL 1082 (1130)
Q Consensus 1010 -~~------v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 1082 (1130)
.. +.+-....++ .++.++.++.+..+|+.+++.+-... .. . ... .... .+..|+.++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~---------~-~~~---~~~~-~~~~l~~~~ 219 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-IS---------G-IYS---LPSV-DGGTLYVTS 219 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS-----------ECE---CEEC-CCTEEEEEE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CC---------C-ccC---Ccee-eCCEEEEEe
Confidence 11 2233333355 67777777754444999999553222 11 1 111 1123 456777777
Q ss_pred CCCcEEEEeCCCCccCCc
Q 001184 1083 TDGSVKVIEPSETERKWG 1100 (1130)
Q Consensus 1083 ~Dg~v~vW~~~~~~~~w~ 1100 (1130)
.++.|..||+.+++.+|.
T Consensus 220 ~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 220 SDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp TTTEEEEEETTTTEEEEE
T ss_pred CCCEEEEEECCCCCEEeE
Confidence 999999999999999995
|
... |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.2e-06 Score=87.27 Aligned_cols=187 Identities=11% Similarity=0.136 Sum_probs=130.1
Q ss_pred EEEEecCCCEEEEEe------CCeEEEEECC-CceeEEEEeCCCCCeEEEEEeCCCCcEEEEEe----------------
Q 001184 838 CVALSKNDSYVMSAG------GGKVSLFNMM-NFKVMTTFMSPPPASTFLAFHPQDNNIIAIGM---------------- 894 (1130)
Q Consensus 838 ~l~~s~dg~~la~~~------dg~i~iwd~~-~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~---------------- 894 (1130)
.-+||+||++|.+.. .|.|-|||.. +.+.+.++..+.-.-..+.+.| |++.|+++.
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecCh
Confidence 468999999999874 3779999998 7888899988887788899999 776666652
Q ss_pred --CCCcEEEEEeecCeEEEE--E--ecCCCCeeEEEEccCCCeEEEEeCCC-------cEEEEECCCCcccceeeEec-c
Q 001184 895 --EDSTIQIYNVRVDEVKTK--L--KGHQKHITGLAFSTNLNILVSSGSDA-------QLIFWNTDTWEKRKSIAIQL-P 960 (1130)
Q Consensus 895 --~dg~v~iwd~~~~~~~~~--l--~~h~~~V~~l~~s~dg~~L~s~s~Dg-------~i~vwd~~~~~~~~~~~~~~-~ 960 (1130)
.+-++...|..+|+++.+ + .-|...|..|++.++|..++..-..| .|.+++... ......... .
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~ 211 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQ 211 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHH
Confidence 123466667788988877 4 33788899999999987666543332 133343332 111110000 0
Q ss_pred CCCCCCCeEEEEEcCCCcEEEEE--cCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEE
Q 001184 961 AGKLPVGETRVQFHSDQVRLLVN--HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIG 1034 (1130)
Q Consensus 961 ~~~~~~~v~~~~~s~d~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~ 1034 (1130)
.......+-+|++++++.+++++ ..+.+.+||..++..+...... .+..++-.+++ ++++.+ .|.+.
T Consensus 212 ~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~-----D~cGva~~~~~-f~~ssG-~G~~~ 280 (305)
T PF07433_consen 212 WRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP-----DACGVAPTDDG-FLVSSG-QGQLI 280 (305)
T ss_pred HHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC-----ceeeeeecCCc-eEEeCC-CccEE
Confidence 01122678999999999988875 4788999999999998876654 56677777666 666655 45433
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.1e-09 Score=117.60 Aligned_cols=217 Identities=16% Similarity=0.229 Sum_probs=160.2
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCC-cEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK-LIRV 482 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~-~v~i 482 (1130)
+++.|....+|++||-+.++|+.|+..|.|++|++.+|.... ...+|..+|+-+.=+.||.. .|.+++... ...+
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~-~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST-QLTSSSSSSPLSAL 1171 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce-eeeeccccCchHHH
Confidence 477899999999999999999999999999999999998765 56899999999999999984 233333333 6789
Q ss_pred Ee--cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecC----CCccEEEEEEecCCCeE
Q 001184 483 WD--LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA----PGLWCTTMLYSADGSRL 556 (1130)
Q Consensus 483 wd--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l 556 (1130)
|+ ..+...++|.+. .++.|+.+. ..-+.|+.-....+||+.+.....++-. ....-+...|+|+..++
T Consensus 1172 W~~~s~~~~~Hsf~ed----~~vkFsn~~--q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDED----KAVKFSNSL--QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred hccccccCcccccccc----ceeehhhhH--HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 99 566677766642 345554432 3334455556778999999877665322 12234678899999988
Q ss_pred EEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcc
Q 001184 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLP 636 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~ 636 (1130)
+--| .+||.+..+.++.|..... ...-.|+|.|..++.-++ |||+++.+.++....-. -.
T Consensus 1246 lndG---------vLWDvR~~~aIh~FD~ft~--~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld----qc 1305 (1516)
T KOG1832|consen 1246 LNDG---------VLWDVRIPEAIHRFDQFTD--YGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD----QC 1305 (1516)
T ss_pred eeCc---------eeeeeccHHHHhhhhhhee--cccccccCCCceEEeech-----hhhhHHHHHHhcCcccc----ce
Confidence 7643 5799998888888775442 333569999999999887 99999998887665432 26
Q ss_pred eEEEcCCCCEEEEE
Q 001184 637 RLRFNKEGNLLVVT 650 (1130)
Q Consensus 637 ~v~~s~~~~~l~~~ 650 (1130)
.+.|+..|..++..
T Consensus 1306 ~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1306 AVTFNSTGDVMYAM 1319 (1516)
T ss_pred EEEeccCccchhhh
Confidence 77888888766543
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.1e-06 Score=85.78 Aligned_cols=209 Identities=17% Similarity=0.204 Sum_probs=146.1
Q ss_pred ceeEEEEec-CCCEEEEEe-CCe-EEEEECCCceeEEEEeCCCCCe--EEEEEeCCCCcEEEEEeC-----CCcEEEEEe
Q 001184 835 VVPCVALSK-NDSYVMSAG-GGK-VSLFNMMNFKVMTTFMSPPPAS--TFLAFHPQDNNIIAIGME-----DSTIQIYNV 904 (1130)
Q Consensus 835 ~i~~l~~s~-dg~~la~~~-dg~-i~iwd~~~~~~~~~~~~~~~~i--~~l~~sp~~~~~lasg~~-----dg~v~iwd~ 904 (1130)
....++.+| ++..++.+- -|+ ..+||..+++....+....+.- -.-+||+ ||++|++.-. .|.|-|||.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEEC
Confidence 345678888 455556665 354 8999999999998887554442 2578999 8888877643 478999999
Q ss_pred e-cCeEEEEEecCCCCeeEEEEccCCCeEEEEeC------------------CCcEEEEECCCCcccceeeEeccCCCCC
Q 001184 905 R-VDEVKTKLKGHQKHITGLAFSTNLNILVSSGS------------------DAQLIFWNTDTWEKRKSIAIQLPAGKLP 965 (1130)
Q Consensus 905 ~-~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~------------------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 965 (1130)
. +.+.+.++..|--.-..+.+.|||+.|+.+-. +-++.+-|..+++.... ..++...+.
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q--~~Lp~~~~~ 162 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQ--VELPPDLHQ 162 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeee--eecCccccc
Confidence 9 67888889888777778999999988887642 23455566666654333 223333444
Q ss_pred CCeEEEEEcCCCcEEEEEc-C-----Cc--EEEEECCCceeeeeeecC----CCCCCCeEEEEECCCCCEEEEEe-CCCc
Q 001184 966 VGETRVQFHSDQVRLLVNH-E-----TQ--LAIYDGSKMECIRQWVPQ----DVLSSPISSAAYSCNSQLIYATF-TDGS 1032 (1130)
Q Consensus 966 ~~v~~~~~s~d~~~l~~~~-d-----~~--i~v~d~~~~~~~~~~~~~----~~~~~~v~~v~~s~dg~~l~t~~-~Dg~ 1032 (1130)
..+..+++.++|..++... . .. +.+++. ++.+..+... .....-+-+|+++++|.++++++ .-+.
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 7899999999999888731 1 11 333433 3323333221 12256899999999999887766 6789
Q ss_pred EEEEeCCCcccccccC
Q 001184 1033 IGVFDADSLRLRCRIA 1048 (1130)
Q Consensus 1033 i~vwd~~~~~~~~~~~ 1048 (1130)
+.+||..+++++....
T Consensus 241 ~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 241 VAVWDAATGRLLGSVP 256 (305)
T ss_pred EEEEECCCCCEeeccc
Confidence 9999999999887765
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.1e-06 Score=81.40 Aligned_cols=231 Identities=12% Similarity=0.147 Sum_probs=135.4
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEecCCc--cceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeE
Q 001184 415 VAWSPDGNFIGVAFTKHLIHLYTYQGSN--DLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQ 492 (1130)
Q Consensus 415 v~~spdg~~las~~~d~~i~vwd~~~~~--~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~ 492 (1130)
++.++||+.||+. .|..|.|-..+..= .+.....-+.....=+.++||||+. +||.+...|+|+++|..|..+..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~t--lLa~a~S~G~i~vfdl~g~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCT--LLAYAESTGTIRVFDLMGSELFV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCc--EEEEEcCCCeEEEEecccceeEE
Confidence 5678999999987 45566665554321 1111111122223457899999999 89999999999999977777766
Q ss_pred ecCC-------CcCEEEEeecccCC----ccEEEEEecCCcEEEEEccCC-----cceeeecC---CCccEEEEEEecCC
Q 001184 493 FEGH-------EAPVYSVCPHQKEN----IHFIFSTAVDGKIKAWLYDNV-----GSRVDYDA---PGLWCTTMLYSADG 553 (1130)
Q Consensus 493 ~~~h-------~~~v~~~~~~~~~~----~~~l~s~s~dg~i~vwd~~~~-----~~~~~~~~---~~~~v~~~~~s~~~ 553 (1130)
+... ...|..+.|..... ...|+.-..+|.++-|-+..+ .....+.. ....|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 6532 24556666643221 235677778888888876432 11222222 34589999999999
Q ss_pred CeEEEeeecCCCCcE-------EEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEE
Q 001184 554 SRLFSCGTSKEGDSH-------LVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTST 626 (1130)
Q Consensus 554 ~~l~~~~~~~~~~~~-------i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 626 (1130)
++|+++|.....++. +..|.+-++.+ ......+.+.+.-.... +..+|.+-+.+.....
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~P-----------yyk~v~~~~~~~~~~~~---~~~~~~~~~~~~fs~~ 225 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSP-----------YYKQVTSSEDDITASSK---RRGLLRIPSFKFFSRQ 225 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCCC-----------cEEEccccCcccccccc---ccceeeccceeeeecc
Confidence 999998864332211 22222211111 11111111111111111 1223443332222211
Q ss_pred eccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 627 EAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 627 ~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
......|..+..||||..||+...+|.|.+|++..-
T Consensus 226 --~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 226 --GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred --ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 122347899999999999999999999999999765
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.9e-06 Score=92.65 Aligned_cols=308 Identities=9% Similarity=0.043 Sum_probs=168.5
Q ss_pred cEEEEEecCCcEEEEEccCCcceeeecCCCc----------cEE-EEEEecCCCeEEEeeecCCCCcEEEEeeCCCCcee
Q 001184 512 HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL----------WCT-TMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK 580 (1130)
Q Consensus 512 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~----------~v~-~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1130)
..++.++.+|.+.-+|.++++.......... .+. .+.. ++..++.++. ++.++.+|.++|+.+
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~----~g~l~ald~~tG~~~ 143 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSE----KGQVYALNAEDGEVA 143 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcC----CCEEEEEECCCCCCc
Confidence 3566666677777777777766665443221 000 0111 3445555543 789999999999988
Q ss_pred EEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCC---cceEEEcCCCCEEEEEeCCCcEE
Q 001184 581 RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPS---LPRLRFNKEGNLLVVTTADQGIK 657 (1130)
Q Consensus 581 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---i~~v~~s~~~~~l~~~~~dg~i~ 657 (1130)
........ ......+ .+..++.+..++.++.+|..+|+.+........... ...... .+..++.++.+|.+.
T Consensus 144 W~~~~~~~-~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~ 218 (394)
T PRK11138 144 WQTKVAGE-ALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVS 218 (394)
T ss_pred ccccCCCc-eecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEE
Confidence 77654321 1111112 245777888899999999999998877764321000 011111 133577788889998
Q ss_pred EEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCccccccc
Q 001184 658 ILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDI 737 (1130)
Q Consensus 658 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1130)
.++..++....+.-.. .|. + ..
T Consensus 219 a~d~~~G~~~W~~~~~-----------------------~~~-----------------------------~------~~ 240 (394)
T PRK11138 219 AVLMEQGQLIWQQRIS-----------------------QPT-----------------------------G------AT 240 (394)
T ss_pred EEEccCChhhheeccc-----------------------cCC-----------------------------C------cc
Confidence 8898887433221000 000 0 00
Q ss_pred CCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCccccccccccccc
Q 001184 738 SDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQ 817 (1130)
Q Consensus 738 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~ 817 (1130)
..-++++. .... .+ .+..+++++.+|.+..+|...+. .+|.
T Consensus 241 -~~~~~~~~-------------------~~sP----~v--~~~~vy~~~~~g~l~ald~~tG~-------------~~W~ 281 (394)
T PRK11138 241 -EIDRLVDV-------------------DTTP----VV--VGGVVYALAYNGNLVALDLRSGQ-------------IVWK 281 (394)
T ss_pred -chhccccc-------------------CCCc----EE--ECCEEEEEEcCCeEEEEECCCCC-------------EEEe
Confidence 00000000 0000 00 13445566666776665543321 1233
Q ss_pred CCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEeCC-CCCeEEEEEeCCCCcEEEEEeCC
Q 001184 818 PSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSP-PPASTFLAFHPQDNNIIAIGMED 896 (1130)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~sp~~~~~lasg~~d 896 (1130)
...+ ....+.. .++..++...+|.+..+|..+++.+-..... .....+..+. + ..|++++.+
T Consensus 282 ~~~~-------------~~~~~~~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~-g~l~v~~~~ 344 (394)
T PRK11138 282 REYG-------------SVNDFAV-DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--N-GYLVVGDSE 344 (394)
T ss_pred ecCC-------------CccCcEE-ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--C-CEEEEEeCC
Confidence 2111 0111222 2344444444899999999999876544321 1122333332 3 356788999
Q ss_pred CcEEEEEeecCeEEEEEecCCCCeeE-EEEccCCCeEEEEeCCCcEEEEEC
Q 001184 897 STIQIYNVRVDEVKTKLKGHQKHITG-LAFSTNLNILVSSGSDAQLIFWNT 946 (1130)
Q Consensus 897 g~v~iwd~~~~~~~~~l~~h~~~V~~-l~~s~dg~~L~s~s~Dg~i~vwd~ 946 (1130)
|.|++.|..+|+.+.+.+-....+.+ ..+ .+..|+.++.||.|+.+++
T Consensus 345 G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 345 GYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 99999999999988877644333332 222 2458888999999887754
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.9e-06 Score=82.63 Aligned_cols=227 Identities=13% Similarity=0.017 Sum_probs=144.3
Q ss_pred EEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCC-CEEEEEeCCCeEEEEEecC
Q 001184 362 LLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG-NFIGVAFTKHLIHLYTYQG 440 (1130)
Q Consensus 362 llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~las~~~d~~i~vwd~~~ 440 (1130)
+||.|+..|...+|...+.+.... ....|...|+-+.=.-|. -.+..++.|.++++.+++.
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~------------------~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~ 147 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLY------------------QCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSG 147 (344)
T ss_pred EEEeccccceeeeecccCccccee------------------eecccccchhhhhhhcccccceeeccCCcceeEEEEec
Confidence 489999999999999987654321 122333323222111122 2466678899999999987
Q ss_pred CccceeeeeeecCCC--CeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCeeeE--ecCCCcCEEEEeecccCCccEE
Q 001184 441 SNDLCQSLEIDAHVG--GVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQ--FEGHEAPVYSVCPHQKENIHFI 514 (1130)
Q Consensus 441 ~~~~~~~~~~~~h~~--~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l 514 (1130)
+.... .-|.. .+.++++++|++ ++++.+....|..|. .+++.+.. ....+..-.+..| +.+...+
T Consensus 148 ~s~~~-----~~h~~~~~~ns~~~snd~~--~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~--s~~~~~F 218 (344)
T KOG4532|consen 148 DSNKF-----AVHNQNLTQNSLHYSNDPS--WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSF--SENDLQF 218 (344)
T ss_pred Ccccc-----eeeccccceeeeEEcCCCc--eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeee--ccCcceE
Confidence 65322 23433 388999999999 889999999999988 44444433 2233333445555 4455789
Q ss_pred EEEecCCcEEEEEccCCccee-----eecCCCccEEEEEEecCCCe-EEEeeecCCCCcEEEEeeCCCCceeEEEecccC
Q 001184 515 FSTAVDGKIKAWLYDNVGSRV-----DYDAPGLWCTTMLYSADGSR-LFSCGTSKEGDSHLVEWNESEGALKRTYIGFRK 588 (1130)
Q Consensus 515 ~s~s~dg~i~vwd~~~~~~~~-----~~~~~~~~v~~~~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~ 588 (1130)
+++..||++.|||++...... ....|.+.+..+.|++.|.. |+.-+ ..-+.+.+.|++++...+.+....+
T Consensus 219 Av~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~s---Ehfs~~hv~D~R~~~~~q~I~i~~d 295 (344)
T KOG4532|consen 219 AVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFIS---EHFSRVHVVDTRNYVNHQVIVIPDD 295 (344)
T ss_pred EEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEe---cCcceEEEEEcccCceeeEEecCcc
Confidence 999999999999998866544 34457778999999986643 22222 2367899999998876555443222
Q ss_pred -------ceeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001184 589 -------KSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1130)
Q Consensus 589 -------~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 619 (1130)
..+...+|+.++..+.+..++ .+.-|++..
T Consensus 296 ~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 296 VERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred ccccccccccccccccCCCcccccccch-hhheeeccc
Confidence 124455566665555554443 233444443
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.8e-07 Score=89.17 Aligned_cols=208 Identities=15% Similarity=0.209 Sum_probs=129.8
Q ss_pred CEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEe
Q 001184 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF 428 (1130)
Q Consensus 349 ~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~ 428 (1130)
.|+.+.|+-+- .|+++..++.+......++.++. .|+-..... +.+++..|.+.-.+-+.+--+..+++++
T Consensus 38 ~~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~~i~--~~~~~a~~sep~p~~~~s~~~t~V~~~~ 108 (319)
T KOG4714|consen 38 KLSKVSLSAEY--ILFTGETSSQIISLGKGRGRCIS-----LWERDDGID--PFKVLAKNSEIDPNDACTMTDNRVCIGY 108 (319)
T ss_pred EEEEeechhhh--eeecccchhheeeeccceEEEec-----hhhcccCcC--ceeeeeccCCCCCcccccccCCceEecC
Confidence 37777777764 58888888888887776665543 222222111 1223445555545555555678899999
Q ss_pred CCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCC------cEEEEec--CCCeeeEecCCCcCE
Q 001184 429 TKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK------LIRVWDL--SGRKLFQFEGHEAPV 500 (1130)
Q Consensus 429 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~------~v~iwd~--~~~~~~~~~~h~~~v 500 (1130)
.||.+.+.+.+.- ++....+..-...-.+.++...+. .+.++ .=| ..+.|+. .+..+.... ....|
T Consensus 109 ~dg~~~v~s~~~~--~~~~~~i~~~~~~~as~~~~~~~~--~i~s~-~~g~~n~~d~~~a~~~~p~~t~~~~~~-~~~~v 182 (319)
T KOG4714|consen 109 ADGSLAVFSTDKD--LALMSRIPSIHSGSASRKICRHGN--SILSG-GCGNWNAQDNFYANTLDPIKTLIPSKK-ALDAV 182 (319)
T ss_pred CCceEEEEechHH--Hhhhhhcccccccccccceeeccc--EEecC-CcceEeeccceeeeccccccccccccc-ccccc
Confidence 9999999998762 221111221111222333444454 33333 222 2344441 111111111 22348
Q ss_pred EEEeecccCCccEEEEEecCCcEEEEEccCCccee-eecCCCccEEEEEEec-CCCeEEEeeecCCCCcEEEEeeCCC
Q 001184 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV-DYDAPGLWCTTMLYSA-DGSRLFSCGTSKEGDSHLVEWNESE 576 (1130)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1130)
.++|-+|... +++++|+.||.+-+||.++..... .+..|..++..+-|.| ++..|++++. +|.+..||..+
T Consensus 183 ~~l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas~ 255 (319)
T KOG4714|consen 183 TALCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAST 255 (319)
T ss_pred hhhhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCCC
Confidence 9999888665 789999999999999999875544 5667888999999998 5678888876 99999999764
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.6e-07 Score=101.78 Aligned_cols=293 Identities=12% Similarity=0.190 Sum_probs=184.3
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCC-
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN- 422 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~- 422 (1130)
+.-.+.+.++..+|.|+- +|.++.-| +.+-|+...-... +. +..-..-.|..+.|||...
T Consensus 21 l~v~~~~~a~si~p~grd-i~lAsr~g-l~i~dld~p~~pp----r~-------------l~h~tpw~vad~qws~h~a~ 81 (1081)
T KOG0309|consen 21 LKVDGGFNAVSINPSGRD-IVLASRQG-LYIIDLDDPFTPP----RW-------------LHHITPWQVADVQWSPHPAK 81 (1081)
T ss_pred EEecCcccceeeccccch-hhhhhhcC-eEEEeccCCCCCc----ee-------------eeccCcchhcceecccCCCC
Confidence 345678999999999986 77777654 4566665422110 00 0111122466778887532
Q ss_pred -EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCeeeEecCCCcC
Q 001184 423 -FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAP 499 (1130)
Q Consensus 423 -~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~~~~~~h~~~ 499 (1130)
+-++......-.+|++.....-...+.+.||..+|+++.|.|.... ++++++.|-.+..|| .-...+..+..-...
T Consensus 82 ~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd-Vlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~ 160 (1081)
T KOG0309|consen 82 PYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD-VLATCSVDTYVHAWDMRSPHRPFYSTSSWRSA 160 (1081)
T ss_pred ceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc-ceeeccccccceeeeccCCCcceeeeeccccc
Confidence 4444444555779998765444444568899999999999998877 899999999999999 334566666655666
Q ss_pred EEEEeecccCCccEEEEEecCCcEEEEEccCCcce-eeecCCCccEEEEEEecC-CCeEEEeeecCCCCcEEEEeeCCCC
Q 001184 500 VYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR-VDYDAPGLWCTTMLYSAD-GSRLFSCGTSKEGDSHLVEWNESEG 577 (1130)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1130)
-..+.|+... +. +++.+..+.|++||.+.+... ..+..+...++.+.|..- ...+.+++. +++|..||....
T Consensus 161 asqVkwnyk~-p~-vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~----d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 161 ASQVKWNYKD-PN-VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSN----DGTVKFWDYSKS 234 (1081)
T ss_pred CceeeecccC-cc-hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCC----CCceeeeccccc
Confidence 7778886533 33 444555678999999887654 466667777888887653 233445443 999999998654
Q ss_pred ceeEEEecccCceeEEEEEcCCCCEEEE--EeCCCcEEE---------EeCCC-CceeEEEeccCCCCCcceEEEcCC--
Q 001184 578 ALKRTYIGFRKKSAGVVQFDTTRNRILA--AGEDNQIKF---------WDMDN-VNMLTSTEAEGGLPSLPRLRFNKE-- 643 (1130)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~v---------wd~~~-~~~~~~~~~~~~~~~i~~v~~s~~-- 643 (1130)
..........+.++..-++.|-|.-.+. --.+..+.+ |+..+ .+++..+.+|.. .|....|-..
T Consensus 235 t~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D--~V~eFlWR~r~e 312 (1081)
T KOG0309|consen 235 TTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD--VVLEFLWRKRKE 312 (1081)
T ss_pred ccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcch--HHHHHhhhhccc
Confidence 3332222223445555556665542222 111113333 33333 346777776654 4444444322
Q ss_pred --------CCEEEEEeCCCcEEEEEcCCC
Q 001184 644 --------GNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 644 --------~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
.-.|++-+.|.++++|-+.+.
T Consensus 313 ~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 313 CDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred ccCCCCccceeEEEeecCCceEeeeccHH
Confidence 236899999999999998653
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=7.2e-06 Score=92.70 Aligned_cols=197 Identities=10% Similarity=-0.028 Sum_probs=122.2
Q ss_pred cEEEEEEcCCCCE-EEEEeCC---CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCC--CcEEEEe
Q 001184 411 SVSRVAWSPDGNF-IGVAFTK---HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD--KLIRVWD 484 (1130)
Q Consensus 411 ~V~~v~~spdg~~-las~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d--~~v~iwd 484 (1130)
.+..-.|||||+. ++..+.+ ..|.++|+.+++... +....+......|+|||+. ++++.+.+ ..|.++|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~----lt~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK----IASSQGMLVVSDVSKDGSK-LLLTMAPKGQPDIYLYD 263 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE----EecCCCcEEeeEECCCCCE-EEEEEccCCCcEEEEEE
Confidence 6788999999985 6654433 569999998876432 3334555677889999986 34444444 4677778
Q ss_pred cCCCeeeEecCCCcCEEEEeecccCCccEEEEEe-cCC--cEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeee
Q 001184 485 LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA-VDG--KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGT 561 (1130)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1130)
..+.....+..+........|+| ||+.|+-.+ ..+ .|.+.|+++++...... .+.. ...|+|||++++....
T Consensus 264 l~~g~~~~LT~~~~~d~~p~~SP--DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~~--~~~~SPDG~~Ia~~~~ 338 (419)
T PRK04043 264 TNTKTLTQITNYPGIDVNGNFVE--DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGKN--NSSVSTYKNYIVYSSR 338 (419)
T ss_pred CCCCcEEEcccCCCccCccEECC--CCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCCc--CceECCCCCEEEEEEc
Confidence 55555566655544333445654 555555444 334 56666776655533222 1211 2489999999988775
Q ss_pred cCC-----CCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCC---CcEEEEeCCCC
Q 001184 562 SKE-----GDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED---NQIKFWDMDNV 620 (1130)
Q Consensus 562 ~~~-----~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~ 620 (1130)
..+ +...|++.|+.++.... +... . ......|+|||+.++....+ ..+.+.+++..
T Consensus 339 ~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 339 ETNNEFGKNTFNLYLISTNSDYIRR-LTAN-G-VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CCCcccCCCCcEEEEEECCCCCeEE-CCCC-C-CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 322 12579999998886543 3322 1 22347899999987776543 23666777543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.4e-05 Score=80.02 Aligned_cols=183 Identities=15% Similarity=0.179 Sum_probs=119.5
Q ss_pred eeEEEEe-cCCCEEEEEeCCeEEEEECCCceeEEEEeC-----CCCCeEEEEEeCCCCcEEEEEeCC--------CcEEE
Q 001184 836 VPCVALS-KNDSYVMSAGGGKVSLFNMMNFKVMTTFMS-----PPPASTFLAFHPQDNNIIAIGMED--------STIQI 901 (1130)
Q Consensus 836 i~~l~~s-~dg~~la~~~dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~sp~~~~~lasg~~d--------g~v~i 901 (1130)
...+++. +++.+ +++..+.+.++|..+++....... .....+.+++.| +|.+.++.... |.|+.
T Consensus 42 ~~G~~~~~~~g~l-~v~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRL-YVADSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEE-EEEETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEE-EEEEcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEE
Confidence 6677787 66555 445555566669998866544442 335578899999 78877766544 44666
Q ss_pred EEeecCeEEEEEecCCCCeeEEEEccCCCeEE-EEeCCCcEEEEECCCCcc-cc-eeeE-eccCCCCCCCeEEEEEcCCC
Q 001184 902 YNVRVDEVKTKLKGHQKHITGLAFSTNLNILV-SSGSDAQLIFWNTDTWEK-RK-SIAI-QLPAGKLPVGETRVQFHSDQ 977 (1130)
Q Consensus 902 wd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~-s~s~Dg~i~vwd~~~~~~-~~-~~~~-~~~~~~~~~~v~~~~~s~d~ 977 (1130)
++.. ++...... .-.....|+|+||++.|+ +-+..+.|..+++..... .. .... ..... ......+++..+|
T Consensus 120 ~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~g~pDG~~vD~~G 195 (246)
T PF08450_consen 120 IDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGG--PGYPDGLAVDSDG 195 (246)
T ss_dssp EETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSS--SCEEEEEEEBTTS
T ss_pred ECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCC--CcCCCcceEcCCC
Confidence 6655 45433333 345578999999999776 556678888888875332 11 1111 11111 1347789999999
Q ss_pred cEEEEE-cCCcEEEEECCCceeeeeeecCCCCCCCeEEEEE-CCCCCEEEEEe
Q 001184 978 VRLLVN-HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAY-SCNSQLIYATF 1028 (1130)
Q Consensus 978 ~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~-s~dg~~l~t~~ 1028 (1130)
.+.++. ..+.|.+++.. |+.+..+... ...+++++| -+|.+.|+..+
T Consensus 196 ~l~va~~~~~~I~~~~p~-G~~~~~i~~p---~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 196 NLWVADWGGGRIVVFDPD-GKLLREIELP---VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp -EEEEEETTTEEEEEETT-SCEEEEEE-S---SSSEEEEEEESTTSSEEEEEE
T ss_pred CEEEEEcCCCEEEEECCC-ccEEEEEcCC---CCCEEEEEEECCCCCEEEEEe
Confidence 987774 68899999988 8888887766 358999999 46767666554
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.6e-06 Score=82.03 Aligned_cols=176 Identities=9% Similarity=-0.004 Sum_probs=121.3
Q ss_pred EEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCc
Q 001184 363 LVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSN 442 (1130)
Q Consensus 363 lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~ 442 (1130)
+..++.|.++++.+++.+..... +.-..-.+.++++|+|++++++.+....|..|.+....
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~-------------------~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~s 191 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFA-------------------VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDES 191 (344)
T ss_pred eeeccCCcceeEEEEecCcccce-------------------eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCcc
Confidence 55677888999998876543321 11111238899999999999999999999999997654
Q ss_pred cceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCC-eee----EecCCCcCEEEEeecccCCccEEEE
Q 001184 443 DLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGR-KLF----QFEGHEAPVYSVCPHQKENIHFIFS 516 (1130)
Q Consensus 443 ~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~-~~~----~~~~h~~~v~~~~~~~~~~~~~l~s 516 (1130)
............+.-.+..|+.... .+|++..||++.||| .... +.. +-..|.+.+..+.|++.+-..+|+.
T Consensus 192 ey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~ 269 (344)
T KOG4532|consen 192 EYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFI 269 (344)
T ss_pred ceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEE
Confidence 4332223344455667889998887 799999999999999 3322 222 2235889999999987665567777
Q ss_pred EecCCcEEEEEccCCcceeeecCCC--------ccEEEEEEecCCCeEEEe
Q 001184 517 TAVDGKIKAWLYDNVGSRVDYDAPG--------LWCTTMLYSADGSRLFSC 559 (1130)
Q Consensus 517 ~s~dg~i~vwd~~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l~~~ 559 (1130)
.-.-+.+.+-|+++......+.... ..+....|+.++..+.+.
T Consensus 270 sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~ 320 (344)
T KOG4532|consen 270 SEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVK 320 (344)
T ss_pred ecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccc
Confidence 7677889999998876554332221 125555666655555444
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.9e-05 Score=81.10 Aligned_cols=219 Identities=16% Similarity=0.106 Sum_probs=137.4
Q ss_pred eEEEEec-CCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEe-CCCCcEEEEEeCCCcEEEEEeecCeEEEEE
Q 001184 837 PCVALSK-NDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFH-PQDNNIIAIGMEDSTIQIYNVRVDEVKTKL 913 (1130)
Q Consensus 837 ~~l~~s~-dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s-p~~~~~lasg~~dg~v~iwd~~~~~~~~~l 913 (1130)
.+.+|.+ ++.++.+.. .+.|..|+..+++... +.... ...+++. + ++.+++ +... .+.++|..+++.....
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~-~g~l~v-~~~~-~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRP-DGRLYV-ADSG-GIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECT-TSEEEE-EETT-CEEEEETTTTEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEcc-CCEEEE-EEcC-ceEEEecCCCcEEEEe
Confidence 3578887 555555554 7899999998876644 32222 7778888 5 665554 4444 4666698888654433
Q ss_pred ec-----CCCCeeEEEEccCCCeEEEEeCC--------CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEE
Q 001184 914 KG-----HQKHITGLAFSTNLNILVSSGSD--------AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRL 980 (1130)
Q Consensus 914 ~~-----h~~~V~~l~~s~dg~~L~s~s~D--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 980 (1130)
.. .....+.+++.|+|++.++.... |.|..++.. ++.. ...... .....++|+||++.|
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~-~~~~~~------~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVT-VVADGL------GFPNGIAFSPDGKTL 148 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEE-EEEEEE------SSEEEEEEETTSSEE
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEE-EEecCc------ccccceEECCcchhe
Confidence 32 33457899999999988876654 446666666 3321 111111 446789999999988
Q ss_pred EEE--cCCcEEEEECCC-ce-e--eeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccc
Q 001184 981 LVN--HETQLAIYDGSK-ME-C--IRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMS 1054 (1130)
Q Consensus 981 ~~~--~d~~i~v~d~~~-~~-~--~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~ 1054 (1130)
++. ..+.|..|++.. +. . ...+.......+....+++..+|++.++....+.|.+++.+ |+++..+....
T Consensus 149 yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~--- 224 (246)
T PF08450_consen 149 YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV--- 224 (246)
T ss_dssp EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS---
T ss_pred eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC---
Confidence 763 577788888853 22 1 12221111112347899999999988888789999999988 88877776322
Q ss_pred cCCCCCceeeeEEEEEcCCCCC-EEEEE
Q 001184 1055 QASPNSQTVFPLVVTSHPQEPN-QLAVG 1081 (1130)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~~~~~~-~l~s~ 1081 (1130)
..+++++|-..+.+ +++|.
T Consensus 225 --------~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 225 --------PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp --------SSEEEEEEESTTSSEEEEEE
T ss_pred --------CCEEEEEEECCCCCEEEEEe
Confidence 24667888533434 44443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.7e-06 Score=83.97 Aligned_cols=95 Identities=20% Similarity=0.342 Sum_probs=72.2
Q ss_pred CeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEE-EEEecCCCCeeEEEEccC-CCe
Q 001184 854 GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVK-TKLKGHQKHITGLAFSTN-LNI 931 (1130)
Q Consensus 854 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~-~~l~~h~~~V~~l~~s~d-g~~ 931 (1130)
+..++|+++..+.+..-......|++++-+|...+++++|+.||.+-+||.+..... ..++.|..+|+-+-|+|. +..
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence 344555554333222222223449999999977789999999999999999877543 346789999999999984 679
Q ss_pred EEEEeCCCcEEEEECCC
Q 001184 932 LVSSGSDAQLIFWNTDT 948 (1130)
Q Consensus 932 L~s~s~Dg~i~vwd~~~ 948 (1130)
|+++++||.+..||..+
T Consensus 239 Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeEecCCCcEEEEcCCC
Confidence 99999999999999875
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.5e-05 Score=88.96 Aligned_cols=187 Identities=13% Similarity=0.109 Sum_probs=111.6
Q ss_pred EEEEEcCCCcEEEEe-cCCCeeeEecCCCc-CE-E-----EEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCC
Q 001184 470 CIVTCGDDKLIRVWD-LSGRKLFQFEGHEA-PV-Y-----SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG 541 (1130)
Q Consensus 470 ~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~-~v-~-----~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 541 (1130)
.++.++.++.+.-+| .+|+.+........ .. . .+.-.+.-.+..++.++.+|.+..+|.++++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 467777788888888 78887766542210 00 0 0000111123567788889999999999998888766544
Q ss_pred ccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCce----eEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001184 542 LWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKS----AGVVQFDTTRNRILAAGEDNQIKFWDM 617 (1130)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg~i~vwd~ 617 (1130)
....+..+. ++ .++++.. ++.|+.+|.++|+.+..+....... ...-.. .+..++.++.+|.+..+|.
T Consensus 151 ~~~ssP~v~-~~-~v~v~~~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 151 EALSRPVVS-DG-LVLVHTS----NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ceecCCEEE-CC-EEEEECC----CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence 322222222 33 4444432 7899999999999887775421100 001111 1346777888999999999
Q ss_pred CCCceeEEEeccCCC--CC---cceEEEcC--CCCEEEEEeCCCcEEEEEcCCC
Q 001184 618 DNVNMLTSTEAEGGL--PS---LPRLRFNK--EGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 618 ~~~~~~~~~~~~~~~--~~---i~~v~~s~--~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
.+|+.+......... .. ...+..+| .+..+++++.+|.+..+|..++
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG 276 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG 276 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC
Confidence 999876654322110 00 11111222 2456777778888888888776
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.8e-06 Score=86.70 Aligned_cols=248 Identities=13% Similarity=0.147 Sum_probs=146.5
Q ss_pred eecCCCccEEEEEEcCCCC-EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001184 404 IVKDSSISVSRVAWSPDGN-FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRV 482 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~-~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~i 482 (1130)
++.+|...|..++|||..+ ++..++.+.+|+|.|+++..++. .+..| ..+++++|.-|..+ +++.|-..|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 6889999999999999877 78889999999999999976554 45556 78999999999877 8999999999999
Q ss_pred Ee--cCCCeeeEecC--CCcCEEEEeeccc----CCccEEEEEecCCcEEEEEccCCcce--eeecC-CCccEEEEEEec
Q 001184 483 WD--LSGRKLFQFEG--HEAPVYSVCPHQK----ENIHFIFSTAVDGKIKAWLYDNVGSR--VDYDA-PGLWCTTMLYSA 551 (1130)
Q Consensus 483 wd--~~~~~~~~~~~--h~~~v~~~~~~~~----~~~~~l~s~s~dg~i~vwd~~~~~~~--~~~~~-~~~~v~~~~~s~ 551 (1130)
|| .....+..+.+ ...+|..++..+. +.+.+++..+.+ ...|++...... ..... ..+.+.++.+.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99 33334444433 2344554432211 122344433332 345654332221 11221 233566677777
Q ss_pred CCCeEEEeeecCCCCcEEE----EeeCCCCceeEEEeccc-Cc------eeEEEEEcCCCCEEEE-EeCCCcEEEEeCCC
Q 001184 552 DGSRLFSCGTSKEGDSHLV----EWNESEGALKRTYIGFR-KK------SAGVVQFDTTRNRILA-AGEDNQIKFWDMDN 619 (1130)
Q Consensus 552 ~~~~l~~~~~~~~~~~~i~----~wd~~~~~~~~~~~~~~-~~------~v~~~~~~~~~~~l~~-~~~dg~i~vwd~~~ 619 (1130)
-.+.++....+...-.+++ --|-.+|..+....... +. .-..+.-.++.++++. ++..+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 5566655443211111111 11222333322111100 10 0111223455566555 55668899999999
Q ss_pred CceeEEEeccCCCCCcceEEEcC-C-CCEEEEEeCCCcEEEEEcC
Q 001184 620 VNMLTSTEAEGGLPSLPRLRFNK-E-GNLLVVTTADQGIKILANA 662 (1130)
Q Consensus 620 ~~~~~~~~~~~~~~~i~~v~~s~-~-~~~l~~~~~dg~i~iw~~~ 662 (1130)
++.++++.... +|..+.... + +.+|++- .|..++||..+
T Consensus 421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~L-Td~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALSE---PVLDICPNDTNGSSYLALL-TDDRVHIYKNE 461 (463)
T ss_pred hheeeecccCc---ceeecceeecCCcchhhhe-ecceEEEEecC
Confidence 99999987763 566655433 3 3455555 45578887654
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.9e-06 Score=85.35 Aligned_cols=248 Identities=16% Similarity=0.222 Sum_probs=152.5
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCc--cceeeeeeecCC------------CCeeEEEEecCCCceEEEEE
Q 001184 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSN--DLCQSLEIDAHV------------GGVNDLAFSYPNKQLCIVTC 474 (1130)
Q Consensus 409 ~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~--~~~~~~~~~~h~------------~~V~~i~~s~d~~~l~l~s~ 474 (1130)
...|+++.|...|.|||+|...|.|.+|.-.... ..+-...+++|. ..|..|.|..++.+-.++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4579999999999999999988999999865432 122223455664 34788888877665467777
Q ss_pred cCCCcEEEEecCCCeeeEec----------CCCcCEEEEeecccCCccEEE-EEe-cCCcEEEEEccCCcceeeecCCCc
Q 001184 475 GDDKLIRVWDLSGRKLFQFE----------GHEAPVYSVCPHQKENIHFIF-STA-VDGKIKAWLYDNVGSRVDYDAPGL 542 (1130)
Q Consensus 475 s~d~~v~iwd~~~~~~~~~~----------~h~~~v~~~~~~~~~~~~~l~-s~s-~dg~i~vwd~~~~~~~~~~~~~~~ 542 (1130)
+.|++|++|..-.+-++... ...+++++..- ++. -.+ .|..|.. ..++..-..|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~-------l~lprls~hd~iiaa-----~p~rvyaNaH~y 173 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKE-------LLLPRLSEHDEIIAA-----KPCRVYANAHPY 173 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHH-------hhcccccccceEEEe-----ccceecccccee
Confidence 88999999993332222111 11222222110 000 000 0111111 111222245667
Q ss_pred cEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCce---eEEEecccC----ceeEEEEEcCCC-CEEEEEeCCCcEEE
Q 001184 543 WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL---KRTYIGFRK----KSAGVVQFDTTR-NRILAAGEDNQIKF 614 (1130)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~----~~v~~~~~~~~~-~~l~~~~~dg~i~v 614 (1130)
.+.++.|..|...++++- +-.|.+|++.-..- +..+..|.- ..+++..|+|.. +.+.-.+..|.|++
T Consensus 174 hiNSiS~NsD~et~lSaD-----dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 174 HINSISFNSDKETLLSAD-----DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred EeeeeeecCchheeeecc-----ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 799999999999999874 78899999764322 122222221 246777888865 45555777899999
Q ss_pred EeCCCCce------eEE--Eec------cCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhccc
Q 001184 615 WDMDNVNM------LTS--TEA------EGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETR 674 (1130)
Q Consensus 615 wd~~~~~~------~~~--~~~------~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 674 (1130)
-|++...+ +.. +.. .+-...|..+.|+++|+++++-.. -+++|||+.....+++++.-|
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechH
Confidence 99974321 111 110 112236788999999999887654 589999998776666655433
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.9e-06 Score=85.38 Aligned_cols=255 Identities=14% Similarity=0.237 Sum_probs=162.9
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeec---ccceeeeccccccceeeeeec--CCCccEEEEEEcCC
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVS---KPFKIWDMSNCSMMLQAAIVK--DSSISVSRVAWSPD 420 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~v~~spd 420 (1130)
..+.|++|.|.-.|.| |++|...|.|.++.-+...--.. .+|+-++. ....++ .-...|..+.|-.+
T Consensus 25 ead~ItaVefd~tg~Y-latGDkgGRVvlfer~~s~~ceykf~teFQshe~-------EFDYLkSleieEKin~I~w~~~ 96 (460)
T COG5170 25 EADKITAVEFDETGLY-LATGDKGGRVVLFEREKSYGCEYKFFTEFQSHEL-------EFDYLKSLEIEEKINAIEWFDD 96 (460)
T ss_pred ccceeeEEEeccccce-EeecCCCceEEEeecccccccchhhhhhhccccc-------chhhhhhccHHHHhhheeeecC
Confidence 4578999999999985 99998889999998665431000 01111000 000111 11346888999876
Q ss_pred CC--EEEEEeCCCeEEEEEecCCc-------------------------cc--------------eeee-eeecCCCCee
Q 001184 421 GN--FIGVAFTKHLIHLYTYQGSN-------------------------DL--------------CQSL-EIDAHVGGVN 458 (1130)
Q Consensus 421 g~--~las~~~d~~i~vwd~~~~~-------------------------~~--------------~~~~-~~~~h~~~V~ 458 (1130)
+. .++..+.|++|++|.+.... .+ .+.. .-..|...|.
T Consensus 97 t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiN 176 (460)
T COG5170 97 TGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHIN 176 (460)
T ss_pred CCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEee
Confidence 54 45566789999999985420 00 0000 1146777889
Q ss_pred EEEEecCCCceEEEEEcCCCcEEEEe--c-CCC-eeeEecCCC-----cCEEEEeecccCCccEEEEEecCCcEEEEEcc
Q 001184 459 DLAFSYPNKQLCIVTCGDDKLIRVWD--L-SGR-KLFQFEGHE-----APVYSVCPHQKENIHFIFSTAVDGKIKAWLYD 529 (1130)
Q Consensus 459 ~i~~s~d~~~l~l~s~s~d~~v~iwd--~-~~~-~~~~~~~h~-----~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~ 529 (1130)
+++|..|.+ .++++ .|=.|-+|+ . .+. .+..++.|. .-|++..|+|... ..+...+..|.|++-|++
T Consensus 177 SiS~NsD~e--t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c-n~fmYSsSkG~Ikl~DlR 252 (460)
T COG5170 177 SISFNSDKE--TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC-NVFMYSSSKGEIKLNDLR 252 (460)
T ss_pred eeeecCchh--eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc-ceEEEecCCCcEEehhhh
Confidence 999999888 45555 577899999 2 222 233344443 4577888887554 566777788999999998
Q ss_pred CCc------ceee--e--------cCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCC-ceeEEEecccC----
Q 001184 530 NVG------SRVD--Y--------DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG-ALKRTYIGFRK---- 588 (1130)
Q Consensus 530 ~~~------~~~~--~--------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~---- 588 (1130)
... .... + ......|..+.|+++|+++++-. --+|.+||.... .++.+..-|..
T Consensus 253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-----yltvkiwDvnm~k~pikTi~~h~~l~~~ 327 (460)
T COG5170 253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-----YLTVKIWDVNMAKNPIKTIPMHCDLMDE 327 (460)
T ss_pred hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-----cceEEEEecccccCCceeechHHHHHHH
Confidence 321 1111 1 11223678899999999999865 578999998753 45666644422
Q ss_pred -------cee---EEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001184 589 -------KSA---GVVQFDTTRNRILAAGEDNQIKFWDM 617 (1130)
Q Consensus 589 -------~~v---~~~~~~~~~~~l~~~~~dg~i~vwd~ 617 (1130)
..| ..+.|+.+.+.+++|+..+..-+|-.
T Consensus 328 l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 328 LNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred HHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 112 23678888888999888777766653
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.1e-06 Score=92.10 Aligned_cols=114 Identities=11% Similarity=0.096 Sum_probs=88.9
Q ss_pred EEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 001184 544 CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNML 623 (1130)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 623 (1130)
.+-..|.|...++++++.+....|.|.||- .+|++.+...- .-.+.++||+|..-.++.|-+-|.+.+|...+.+.-
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~--P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h 94 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY--PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH 94 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc--ceehhhhccChHHHHHhhccccceeEEEecCCceee
Confidence 344678999999999988888889999986 56665443332 113556999998878888888999999998776654
Q ss_pred EEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001184 624 TSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANA 662 (1130)
Q Consensus 624 ~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~ 662 (1130)
..... +..+|..+.||++|..+.++..-|.+.+|...
T Consensus 95 tv~~t--h~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 95 TVVET--HPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeccC--CCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 44433 34489999999999999999999999999876
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00017 Score=75.52 Aligned_cols=203 Identities=20% Similarity=0.221 Sum_probs=133.6
Q ss_pred EEEEecCCCEEEEEe---CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEee-cCeEEEEE
Q 001184 838 CVALSKNDSYVMSAG---GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR-VDEVKTKL 913 (1130)
Q Consensus 838 ~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~-~~~~~~~l 913 (1130)
.+++|.||+++.+.. .-.|.|.|+..++.+.++.... +..+--++ +.-+.+-+.||++.-..+. .|+...+-
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~~--~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPSG--NRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEEE--TTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEecC--CCceEEEecCCceEEEEECCCCCEeEee
Confidence 357888999888876 4779999999999998887433 33333233 3457788899999998887 55554322
Q ss_pred ----ecCCCCe-eEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccC------CCCCCCeEEEEEcCCCcEEEE
Q 001184 914 ----KGHQKHI-TGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPA------GKLPVGETRVQFHSDQVRLLV 982 (1130)
Q Consensus 914 ----~~h~~~V-~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~------~~~~~~v~~~~~s~d~~~l~~ 982 (1130)
..-.+++ ..-+++.++..++-.+-+|.|+--|+............... +=.+++-..+++++....|.+
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 1122222 24455556667777888999988888876543333333221 112245566888877666655
Q ss_pred ----EcC-------CcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCC-EEEEEe-CCCcEEEEeCCCcccccccC
Q 001184 983 ----NHE-------TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQ-LIYATF-TDGSIGVFDADSLRLRCRIA 1048 (1130)
Q Consensus 983 ----~~d-------~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~t~~-~Dg~i~vwd~~~~~~~~~~~ 1048 (1130)
+.+ ..|-+||+.+++.+..+... .++.+|.+|.|.+ +|++.+ .++.+.|||..+|+.+..+.
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~----~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE----HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE----EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeCC----CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 212 24889999999999998864 4788999999888 665544 57999999999999988876
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.8e-06 Score=87.80 Aligned_cols=211 Identities=10% Similarity=0.157 Sum_probs=144.2
Q ss_pred cCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCC----CeeeEecCCCcCEEEEeecccCCccEEEEEec-CCcEEEE
Q 001184 452 AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSG----RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV-DGKIKAW 526 (1130)
Q Consensus 452 ~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~vw 526 (1130)
-|.+.|+.+.-+.. + ++.+++.||.++.|..+. +.+..+..|-+.|.+++.+ -++.++.|.+. |..++++
T Consensus 7 mhrd~i~hv~~tka-~--fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S--~dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 7 MHRDVITHVFPTKA-K--FIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVS--YDGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred cccceeeeEeeehh-h--eEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcc--ccceeEeeccCcccceeEE
Confidence 47777877766643 3 799999999999999443 2345567788888888774 45577888777 9999999
Q ss_pred EccCCcceee--ecCCCccEEEEEEecCC--CeEEEeeecCCCCcEEEEeeCCCCc-eeEEEecccCceeEEEEEcCCCC
Q 001184 527 LYDNVGSRVD--YDAPGLWCTTMLYSADG--SRLFSCGTSKEGDSHLVEWNESEGA-LKRTYIGFRKKSAGVVQFDTTRN 601 (1130)
Q Consensus 527 d~~~~~~~~~--~~~~~~~v~~~~~s~~~--~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~ 601 (1130)
|+++....-. +......+. .+...| .-+++.+. -.++.+.++|-.... ....+.+.+-.+|.++.+.+.+.
T Consensus 82 DvEn~DminmiKL~~lPg~a~--wv~skGd~~s~IAVs~--~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D 157 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAE--WVTSKGDKISLIAVSL--FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD 157 (558)
T ss_pred EeeccchhhhcccccCCCceE--EecCCCCeeeeEEeec--ccCCCcEEECCcCCcCccceecccccCceEEEEeecccc
Confidence 9987554422 222222121 122223 22222221 237889999976543 44455555666899999999999
Q ss_pred EEEEEeCCCcEEEEeCCC------CceeEEEec-------cCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhh
Q 001184 602 RILAAGEDNQIKFWDMDN------VNMLTSTEA-------EGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRAL 668 (1130)
Q Consensus 602 ~l~~~~~dg~i~vwd~~~------~~~~~~~~~-------~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 668 (1130)
.+++....|.|.-|.... .+....++. ........++.|+|++..+.+-+.|..|+++...++ ...
T Consensus 158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG-klv 236 (558)
T KOG0882|consen 158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG-KLV 236 (558)
T ss_pred ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc-hhh
Confidence 999999999999999873 111111111 112235689999999999999999999999999988 555
Q ss_pred hhhc
Q 001184 669 RAIE 672 (1130)
Q Consensus 669 ~~~~ 672 (1130)
+.++
T Consensus 237 qeiD 240 (558)
T KOG0882|consen 237 QEID 240 (558)
T ss_pred hhhh
Confidence 5544
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.6e-07 Score=91.78 Aligned_cols=160 Identities=15% Similarity=0.099 Sum_probs=101.4
Q ss_pred eeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE----EcCCcEEEEECCC
Q 001184 920 ITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV----NHETQLAIYDGSK 995 (1130)
Q Consensus 920 V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~----~~d~~i~v~d~~~ 995 (1130)
+..+..++++++||++..+....++++........ ....... +..-..+.|..+.....+ ++...+.+|....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~k-l~~~~~v--~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~ 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAK-LLDVSCV--PKRPTAISFIREDTSVLVADKAGDVYSFDILSADS 141 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcce-eeeEeec--ccCcceeeeeeccceEEEEeecCCceeeeeecccc
Confidence 34456677788888888777777777665433111 1111100 022334444444443332 3456677777666
Q ss_pred ceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCC
Q 001184 996 MECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEP 1075 (1130)
Q Consensus 996 ~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1075 (1130)
+.+... .+|-+-++.++||||+++|.++..|..|||-.+..--.+..+-. +|.+-+..+++. ++
T Consensus 142 ~~~~~~----lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl--------GH~eFVS~isl~----~~ 205 (390)
T KOG3914|consen 142 GRCEPI----LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL--------GHKEFVSTISLT----DN 205 (390)
T ss_pred cCcchh----hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc--------ccHhheeeeeec----cC
Confidence 443322 34478999999999999999999999999998875554444321 123333334443 46
Q ss_pred CEEEEEeCCCcEEEEeCCCCccC
Q 001184 1076 NQLAVGLTDGSVKVIEPSETERK 1098 (1130)
Q Consensus 1076 ~~l~s~~~Dg~v~vW~~~~~~~~ 1098 (1130)
+.|++||.|++|++||+.++..-
T Consensus 206 ~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 206 YLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred ceeeecCCCCcEEEEecccCCcc
Confidence 78999999999999999998864
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00035 Score=68.32 Aligned_cols=137 Identities=9% Similarity=-0.011 Sum_probs=87.9
Q ss_pred cEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCcee
Q 001184 512 HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSA 591 (1130)
Q Consensus 512 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 591 (1130)
.+++.|+-.+.+.--|..++....+-.... .+.+-+.- -|++++.+.. .+.+++.+.++|.....+.....-.+
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~-RiE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~~vk~ 97 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGV-RIECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILETVKV 97 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCc-eeeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehhhhcc
Confidence 455666666666666666655554332222 22222222 4677888887 88999999999988777765333122
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 001184 592 GVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIK 657 (1130)
Q Consensus 592 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~ 657 (1130)
.....+++..+..|+.|+..+..|..+..++...+..+. ...+-+..|-...|..+...|.+.
T Consensus 98 -~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~--~f~sP~i~~g~~sly~a~t~G~vl 160 (354)
T KOG4649|consen 98 -RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG--TFVSPVIAPGDGSLYAAITAGAVL 160 (354)
T ss_pred -ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc--eeccceecCCCceEEEEeccceEE
Confidence 245678899999999999999999999999888776654 233344555233344454555443
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.8e-06 Score=90.26 Aligned_cols=257 Identities=14% Similarity=0.117 Sum_probs=169.7
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCE
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 423 (1130)
+-|.+.|+.|.-+-.. ++.+++.||.++.|.-..-.-+. | ..-+..|-+.|.+++.|-||..
T Consensus 6 ymhrd~i~hv~~tka~--fiiqASlDGh~KFWkKs~isGvE---f-------------VKhFraHL~~I~sl~~S~dg~L 67 (558)
T KOG0882|consen 6 YMHRDVITHVFPTKAK--FIIQASLDGHKKFWKKSRISGVE---F-------------VKHFRAHLGVILSLAVSYDGWL 67 (558)
T ss_pred hcccceeeeEeeehhh--eEEeeecchhhhhcCCCCcccee---e-------------hhhhHHHHHHHHhhhcccccee
Confidence 3488888888776654 68999999999999754311111 0 0125678899999999999999
Q ss_pred EEEEeC-CCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCC-CceEEEEEcCCCcEEEEe--cCC-CeeeEecCCCc
Q 001184 424 IGVAFT-KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPN-KQLCIVTCGDDKLIRVWD--LSG-RKLFQFEGHEA 498 (1130)
Q Consensus 424 las~~~-d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~-~~l~l~s~s~d~~v~iwd--~~~-~~~~~~~~h~~ 498 (1130)
+++.+. |..++++|++.-..+.-. .+..-.+.+. +..++.. ..++.++.-.++.+.|+| .++ +....-.-|..
T Consensus 68 ~~Sv~d~Dhs~KvfDvEn~Dminmi-KL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~s 145 (558)
T KOG0882|consen 68 FRSVEDPDHSVKVFDVENFDMINMI-KLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFS 145 (558)
T ss_pred EeeccCcccceeEEEeeccchhhhc-ccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccC
Confidence 999877 999999999875543211 1221222221 1222221 111444555688999999 344 23344456999
Q ss_pred CEEEEeecccCCccEEEEEecCCcEEEEEccC----Cc--cee---------eecCCCccEEEEEEecCCCeEEEeeecC
Q 001184 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN----VG--SRV---------DYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1130)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~----~~--~~~---------~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1130)
+|..+.+.+.. ...++....|.|.-|..+. .+ ... .+........++.|+|+|..+.+.+.
T Consensus 146 PV~~i~y~qa~--Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~-- 221 (558)
T KOG0882|consen 146 PVKKIRYNQAG--DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP-- 221 (558)
T ss_pred ceEEEEeeccc--cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCc--
Confidence 99999987665 5688888889999998763 11 111 12222335789999999999998875
Q ss_pred CCCcEEEEeeCCCCceeEEEecc--------------------------------cCceeEEEEEcCCCCEEEEEeCCCc
Q 001184 564 EGDSHLVEWNESEGALKRTYIGF--------------------------------RKKSAGVVQFDTTRNRILAAGEDNQ 611 (1130)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~--------------------------------~~~~v~~~~~~~~~~~l~~~~~dg~ 611 (1130)
+..|++++.++|++++.+... .......++|...+++|+-|+-=|
T Consensus 222 --DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g- 298 (558)
T KOG0882|consen 222 --DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG- 298 (558)
T ss_pred --ccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-
Confidence 899999999998876654311 111223356777777777766544
Q ss_pred EEEEeCCCCceeEEEe
Q 001184 612 IKFWDMDNVNMLTSTE 627 (1130)
Q Consensus 612 i~vwd~~~~~~~~~~~ 627 (1130)
|+|.++.++++++.+.
T Consensus 299 ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 299 IKVINLDTNTVVRILG 314 (558)
T ss_pred EEEEEeecCeEEEEec
Confidence 7777777776666553
|
|
| >KOG0396 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.2e-07 Score=91.68 Aligned_cols=119 Identities=14% Similarity=0.217 Sum_probs=98.9
Q ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHhcCCC--------ccHHHHHHHHhccCHHHHHHHhccCC-CcCCCccchhhhHH
Q 001184 5 SRELVFLILQFLDEEKFKESVHRLEQESGFF--------FNMKYFEEKALAGEWDEIEKYLSGFT-KVDDNRYSMKIFFE 75 (1130)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~--------~~~~~~~~~i~~g~w~~~~~~l~~~~-~~~~~~~~~~~~~~ 75 (1130)
++=+.|+|..||..+||.++|..|-++|++. .++..++++|++|+...|+.-.+.-. .+. +....+-|.
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk--K~~S~lEf~ 192 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK--KEESSLEFQ 192 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--hccchhhhH
Confidence 4558899999999999999999999999985 13778999999999999988776541 111 222347899
Q ss_pred HHHhHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccccc
Q 001184 76 IRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFR 125 (1130)
Q Consensus 76 i~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 125 (1130)
++.|.|+||+..+++.+|+.+.++.+.|......++++....+|.++...
T Consensus 193 lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t 242 (389)
T KOG0396|consen 193 LRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYT 242 (389)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCcccc
Confidence 99999999999999999999999999999876678888888888876443
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.9e-05 Score=83.29 Aligned_cols=192 Identities=18% Similarity=0.162 Sum_probs=119.6
Q ss_pred CCCEEEEE-eCCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEE-ecCCC---
Q 001184 844 NDSYVMSA-GGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKL-KGHQK--- 918 (1130)
Q Consensus 844 dg~~la~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~~--- 918 (1130)
++..++++ .++.|..||..+|+.+............... .+..+++++.++.|+.+|..+|+.+-.. .....
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~---~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV---DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE---ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee---cccccccccceeeeEecccCCcceeeeeccccccccc
Confidence 44555555 5899999999999998888753221122222 2335566778889999999999988874 33211
Q ss_pred CeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCC----CCeEEEEEcCCCcEEEEEcCCcEEEEECC
Q 001184 919 HITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLP----VGETRVQFHSDQVRLLVNHETQLAIYDGS 994 (1130)
Q Consensus 919 ~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~----~~v~~~~~s~d~~~l~~~~d~~i~v~d~~ 994 (1130)
.........++..++.+..++.|..+|+++|+..-............ .....-....++..++++.++.+.-+|..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~ 191 (238)
T PF13360_consen 112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLA 191 (238)
T ss_dssp TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETT
T ss_pred cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECC
Confidence 12233334448889999989999999999987654443322111100 11122223335555555556654444999
Q ss_pred CceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccc
Q 001184 995 KMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLR 1044 (1130)
Q Consensus 995 ~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~ 1044 (1130)
+++.+.... . ..+.. ....++..|+.++.++.|..||+.+|+..
T Consensus 192 tg~~~w~~~-~----~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 192 TGEKLWSKP-I----SGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp TTEEEEEEC-S----S-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred CCCEEEEec-C----CCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 999664222 1 12222 13567788888889999999999999864
|
... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.6e-05 Score=93.89 Aligned_cols=275 Identities=10% Similarity=0.120 Sum_probs=162.4
Q ss_pred ccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCC
Q 001184 767 ASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDS 846 (1130)
Q Consensus 767 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~ 846 (1130)
...|.++.|-.++..++.+...|.|.+-|..+.... +.+.-...|.+++||||++
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-------------------------ivg~vd~GI~aaswS~Dee 122 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-------------------------IVGNVDNGISAASWSPDEE 122 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-------------------------eeeeccCceEEEeecCCCc
Confidence 478999999999999999999999987654332211 1123577899999999999
Q ss_pred EEEEEeCCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCe-----EEEEEe-----cC
Q 001184 847 YVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE-----VKTKLK-----GH 916 (1130)
Q Consensus 847 ~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~-----~~~~l~-----~h 916 (1130)
.++....+...++...+..++.....+. .-.+ .++.+ ..++...=.-+.-..|+ .+...+ .-
T Consensus 123 ~l~liT~~~tll~mT~~f~~i~E~~L~~------d~~~-~sk~v-~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~ 194 (1265)
T KOG1920|consen 123 LLALITGRQTLLFMTKDFEPIAEKPLDA------DDER-KSKFV-NVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQ 194 (1265)
T ss_pred EEEEEeCCcEEEEEeccccchhcccccc------cccc-ccccc-eecccccceeeecchhhhcccccccccccccchhh
Confidence 9999886444444444444443322111 1111 12222 22222211111111111 000000 11
Q ss_pred CCCeeEEEEccCCCeEEEEe-----CCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE----EcCCc
Q 001184 917 QKHITGLAFSTNLNILVSSG-----SDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV----NHETQ 987 (1130)
Q Consensus 917 ~~~V~~l~~s~dg~~L~s~s-----~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~----~~d~~ 987 (1130)
.+.=+.|.|--||+++|+.. ....|+|||-+ +..... .......-.+++|-|.|.++++ ++++.
T Consensus 195 ~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~------se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~ 267 (1265)
T KOG1920|consen 195 DDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNST------SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD 267 (1265)
T ss_pred ccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcc------cCcccccccceeecCCCCeEeeeeecCCCCc
Confidence 22235699999999998832 23789999988 322111 1111244568999999999998 35778
Q ss_pred EEEEECCCceeeeeeecCCCC-CCCeEEEEECCCCCEEEE---EeCCCcEEEEeCCCcccccccCCCcccccCCCCCcee
Q 001184 988 LAIYDGSKMECIRQWVPQDVL-SSPISSAAYSCNSQLIYA---TFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTV 1063 (1130)
Q Consensus 988 i~v~d~~~~~~~~~~~~~~~~-~~~v~~v~~s~dg~~l~t---~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 1063 (1130)
|.+|.-.... -..+...... ..+|..++|+.++..||+ ......|++|-..+...-...... . ....
T Consensus 268 IvffErNGL~-hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~--~------~~~~ 338 (1265)
T KOG1920|consen 268 IVFFERNGLR-HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQ--F------SQKA 338 (1265)
T ss_pred EEEEecCCcc-ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEe--c------cccc
Confidence 9999865322 2222111111 334999999999999998 444555999988765432221110 0 1111
Q ss_pred eeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 001184 1064 FPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1093 (1130)
Q Consensus 1064 ~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~ 1093 (1130)
-+.|+|..+..|..-..+|...+.++.
T Consensus 339 ---~~~W~p~~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 339 ---LLMWDPVTEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred ---cccccCCCceeEEEEecCCcEEEEEEE
Confidence 178888777777777678877777764
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00035 Score=68.37 Aligned_cols=115 Identities=10% Similarity=0.076 Sum_probs=79.4
Q ss_pred EEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCeE
Q 001184 354 DFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLI 433 (1130)
Q Consensus 354 ~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i 433 (1130)
..-||.+++++.|+..+.+.--|..+|+.+-... + ...|-+-+.- -|++++.|...|.+
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We~i-----------------l---g~RiE~sa~v-vgdfVV~GCy~g~l 75 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-----------------L---GVRIECSAIV-VGDFVVLGCYSGGL 75 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCcEEeehh-----------------h---CceeeeeeEE-ECCEEEEEEccCcE
Confidence 3455667789999999999999999998764211 1 1122222221 47789999999999
Q ss_pred EEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEec
Q 001184 434 HLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFE 494 (1130)
Q Consensus 434 ~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~ 494 (1130)
.+-+.++|........+.. -=......+++. ++..|+.|++.+..| .+..++...+
T Consensus 76 Yfl~~~tGs~~w~f~~~~~---vk~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 76 YFLCVKTGSQIWNFVILET---VKVRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred EEEEecchhheeeeeehhh---hccceEEcCCCc--eEEEecCCCcEEEecccccceEEecc
Confidence 9999999976653322221 112234556777 899999999999999 7767766644
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.2e-06 Score=94.44 Aligned_cols=179 Identities=17% Similarity=0.237 Sum_probs=134.0
Q ss_pred CCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeE
Q 001184 844 NDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITG 922 (1130)
Q Consensus 844 dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 922 (1130)
++..++.|+ ...+..+|+.+.+..+......+.|+-++. +++++.+|...|+|.+-|..+.+.+.++..|++.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 445566666 788999999999888887766656776765 6789999999999999999999999999999999987
Q ss_pred EEEccCCCeEEEEeC---------CCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCC--CcEEEEEcCCcEEEE
Q 001184 923 LAFSTNLNILVSSGS---------DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSD--QVRLLVNHETQLAIY 991 (1130)
Q Consensus 923 l~~s~dg~~L~s~s~---------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--~~~l~~~~d~~i~v~ 991 (1130)
+.. .|+.|+++|. |..|+|||+..-+.. .+++++.+ ..-+.|.|. .+.++++..|...+-
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral--~PI~~~~~-----P~flrf~Psl~t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL--SPIQFPYG-----PQFLRFHPSLTTRLAVTSQSGQFQFV 293 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhcc--CCcccccC-----chhhhhcccccceEEEEecccceeec
Confidence 665 5899999985 667899999884432 22222222 234556664 344555788899988
Q ss_pred ECCC-cee---eeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEe
Q 001184 992 DGSK-MEC---IRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFD 1037 (1130)
Q Consensus 992 d~~~-~~~---~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd 1037 (1130)
|..+ +.. +..+.+. ...+.++++|++|..||.|..+|.|.+|-
T Consensus 294 d~~~lsNP~~~~~~v~p~---~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNPN---GSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccccCCCccceeEEccC---CCcceeEEecCCCceEEEecccCcEeeec
Confidence 8432 222 2222222 45599999999999999999999999996
|
|
| >PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10 | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.6e-07 Score=84.50 Aligned_cols=135 Identities=22% Similarity=0.218 Sum_probs=97.0
Q ss_pred HHHHHHHHhccCHHHHHHHhccCCCcCCCccchhhhHHHHHhHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHH
Q 001184 38 MKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQ 117 (1130)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ 117 (1130)
...++++|++|+++.|++.++......... ...+.|.|+.|+|+||+..++..+|+.+.|+.+.|......+.++.+..
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~-~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKR-NSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhc-CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 568999999999999999998873221111 2348999999999999999999999999999997765434577888888
Q ss_pred hhccccccc--ccccccCCCChhHHHHHHHHHHhhcccCcCccccccCCCCC-hHHHHHHHHHHHHHHH
Q 001184 118 LLTLENFRE--NEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLK-TSRLRTLINQSLNWQH 183 (1130)
Q Consensus 118 ll~~~~~~~--~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~ll~qa~~~q~ 183 (1130)
+|...+..+ ...+...-+ .+.|.++.+.+.+.+-...- +| .+.|..++.+....+.
T Consensus 84 lL~~~~~~~~~~s~~~~l~~-~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l~ 142 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKELLS-PERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSALK 142 (145)
T ss_pred HHHcCCcccccchHHHHHhC-hHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHhh
Confidence 888776554 222222222 37788888888876544211 33 4668888887765543
|
RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined []. |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.8e-07 Score=62.24 Aligned_cols=39 Identities=28% Similarity=0.572 Sum_probs=37.1
Q ss_pred CeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEE
Q 001184 907 DEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945 (1130)
Q Consensus 907 ~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd 945 (1130)
++++.++.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00011 Score=82.05 Aligned_cols=265 Identities=16% Similarity=0.180 Sum_probs=143.6
Q ss_pred ecCCCeEEEEE--------eCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEE
Q 001184 356 HPFHHTLLVVG--------CGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1130)
Q Consensus 356 spdg~~llasg--------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 427 (1130)
|||++++|+.- +..+.+.|||+++++.... ......+....|||||+++|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l--------------------~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPL--------------------TPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEES--------------------S-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEEC--------------------cCCccccccceeecCCCeeEEE
Confidence 68888755522 2245789999998776541 1115678899999999999998
Q ss_pred eCCCeEEEEEecCCccceeeeeeecC----------------CCCeeEEEEecCCCceEEEEEc-CCCcEEE--------
Q 001184 428 FTKHLIHLYTYQGSNDLCQSLEIDAH----------------VGGVNDLAFSYPNKQLCIVTCG-DDKLIRV-------- 482 (1130)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~~~~~~h----------------~~~V~~i~~s~d~~~l~l~s~s-~d~~v~i-------- 482 (1130)
. ++.|.+++..++...+. +..|- -+.-..+-|||||++ |+... .+..|+.
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~~~~~~~~ 135 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEYPLPDYSP 135 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EEEEEEESS
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceEEeeccCC
Confidence 6 57899999887743321 22220 122356889999995 33322 2232322
Q ss_pred ---------------------------Ee-cCCCeee--Ee---cCCCcCEEEEeecccCCccEEE--EEecCC---cEE
Q 001184 483 ---------------------------WD-LSGRKLF--QF---EGHEAPVYSVCPHQKENIHFIF--STAVDG---KIK 524 (1130)
Q Consensus 483 ---------------------------wd-~~~~~~~--~~---~~h~~~v~~~~~~~~~~~~~l~--s~s~dg---~i~ 524 (1130)
+| .+++... .. ..-...+..+.|.++ +..|+ ....+. .+.
T Consensus 136 ~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d--~~~l~~~~~nR~q~~~~l~ 213 (353)
T PF00930_consen 136 PDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPD--GKRLWVQWLNRDQNRLDLV 213 (353)
T ss_dssp STESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEET--TEEEEEEEEETTSTEEEEE
T ss_pred ccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCC--CcEEEEEEcccCCCEEEEE
Confidence 22 1111100 00 112223444555433 23222 222222 345
Q ss_pred EEEccCCcceeeecC-CCccE---EEEEEe-cCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCcee-EEEEEcC
Q 001184 525 AWLYDNVGSRVDYDA-PGLWC---TTMLYS-ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSA-GVVQFDT 598 (1130)
Q Consensus 525 vwd~~~~~~~~~~~~-~~~~v---~~~~~s-~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v-~~~~~~~ 598 (1130)
++|..++........ ...++ ....|. +++..++..+. .++-..|++++...+... .+.... ..| ..+.+++
T Consensus 214 ~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~-~lT~G~-~~V~~i~~~d~ 290 (353)
T PF00930_consen 214 LCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPR-QLTSGD-WEVTSILGWDE 290 (353)
T ss_dssp EEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEE-ESS-SS-S-EEEEEEEEC
T ss_pred EEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEccccccee-ccccCc-eeecccceEcC
Confidence 556665544432221 22222 245554 88888887775 777889999998877644 333222 245 4578888
Q ss_pred CCCEEEE-EeC----CCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeC
Q 001184 599 TRNRILA-AGE----DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTA 652 (1130)
Q Consensus 599 ~~~~l~~-~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~ 652 (1130)
+++.|+. +.. ...|+.-++..+..+..+...... ...+.|||++++++....
T Consensus 291 ~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~--~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 291 DNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD--HYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp TSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST--TEEEEE-TTSSEEEEEEE
T ss_pred CCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC--ceEEEECCCCCEEEEEEc
Confidence 8876654 443 235666677723344455444331 158999999998876543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.1e-06 Score=88.68 Aligned_cols=166 Identities=16% Similarity=0.112 Sum_probs=124.4
Q ss_pred EEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCC
Q 001184 351 VSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTK 430 (1130)
Q Consensus 351 ~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d 430 (1130)
+.++||-+-.-+-++.+.+-.|-|-|+++|-.-. + ..++.|.++.|...+.++..|+.+
T Consensus 215 ~~CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f-~sksDVfAlQf~~s~nLv~~GcRn 273 (425)
T KOG2695|consen 215 WSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------F-QSKSDVFALQFAGSDNLVFNGCRN 273 (425)
T ss_pred hhhhhhhccceeeecccccceeEEEEeecccccc--------------------c-ccchhHHHHHhcccCCeeEecccC
Confidence 3446664432223445557788999998876432 2 246679999999989999999999
Q ss_pred CeEEEEEecCCcc--ceeeeeeecCCCCeeEEEEec-CCCceEEEEEcCCCcEEEEe-cCCCe---eeEecCCCcCEEEE
Q 001184 431 HLIHLYTYQGSND--LCQSLEIDAHVGGVNDLAFSY-PNKQLCIVTCGDDKLIRVWD-LSGRK---LFQFEGHEAPVYSV 503 (1130)
Q Consensus 431 ~~i~vwd~~~~~~--~~~~~~~~~h~~~V~~i~~s~-d~~~l~l~s~s~d~~v~iwd-~~~~~---~~~~~~h~~~v~~~ 503 (1130)
|.|..+|+..+.. ...... --|...|+++.... +++ +|++.+.+|.|++|| .--++ +..+.||-..-.-+
T Consensus 274 geI~~iDLR~rnqG~~~~a~r-lyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l 350 (425)
T KOG2695|consen 274 GEIFVIDLRCRNQGNGWCAQR-LYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYL 350 (425)
T ss_pred CcEEEEEeeecccCCCcceEE-EEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeeccccccccc
Confidence 9999999987522 111222 34899999998887 566 789999999999999 44444 88999998877777
Q ss_pred eecccCCccEEEEEecCCcEEEEEccCCcceeeecCC
Q 001184 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP 540 (1130)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 540 (1130)
-++-.+....++++++|-..|+|.++.+....++...
T Consensus 351 ~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 351 PAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred ccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 6776777789999999999999999988777665543
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00022 Score=74.77 Aligned_cols=137 Identities=9% Similarity=0.053 Sum_probs=87.8
Q ss_pred CcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeee--c----CCCCcEEEEeeCCCCceeEEEecccC---c--
Q 001184 521 GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGT--S----KEGDSHLVEWNESEGALKRTYIGFRK---K-- 589 (1130)
Q Consensus 521 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~----~~~~~~i~~wd~~~~~~~~~~~~~~~---~-- 589 (1130)
+++.++|.++++..-.+.. +..-.+..+||++.++++.. + ++..-.|.+||..+-.....+.-... .
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 3677777776655443332 22334678999999987653 1 11244688999999887765543221 1
Q ss_pred -eeEEEEEcCCCCEEEEE--eCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 590 -SAGVVQFDTTRNRILAA--GEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 590 -~v~~~~~~~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
.....+++.++++++.. +-...|.|-|+..++.+..+...+ +..+.-+. ..-+.+.+.||.+.-..+...
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~ 167 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSG-NRGFSMLCGDGSLLTVTLDAD 167 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEE-TTEEEEEETTSCEEEEEETST
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecC-CCceEEEecCCceEEEEECCC
Confidence 12236788999988774 445679999999999988887654 22222222 245778889999998888743
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00015 Score=82.18 Aligned_cols=103 Identities=18% Similarity=0.158 Sum_probs=74.0
Q ss_pred CCceeEEEEecCCCEEEEEe--CCeEEEEECCCcee------------EEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCc
Q 001184 833 EDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKV------------MTTFMSPPPASTFLAFHPQDNNIIAIGMEDST 898 (1130)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~------------~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~ 898 (1130)
......+++||||+++++++ +.+|.|.|+.+.+. ..+.+. .......+|.+ +|....+-.-|..
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg-~G~aytslf~dsq 397 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDG-RGNAYTTLFLDSQ 397 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECC-CCCEEEeEeecce
Confidence 45667899999999999887 78999999987553 333332 23345678888 6788888899999
Q ss_pred EEEEEeec----------CeEEEEEecCCCCeeE-----EEEccCCCeEEEEeC
Q 001184 899 IQIYNVRV----------DEVKTKLKGHQKHITG-----LAFSTNLNILVSSGS 937 (1130)
Q Consensus 899 v~iwd~~~----------~~~~~~l~~h~~~V~~-----l~~s~dg~~L~s~s~ 937 (1130)
|..|++.+ ...+.++.-|-.+..- =.-.|||++|++...
T Consensus 398 v~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 398 IVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred eEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 99999986 3556666555443221 123689999998754
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.4e-06 Score=87.91 Aligned_cols=165 Identities=13% Similarity=0.147 Sum_probs=123.4
Q ss_pred eEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCC----cc
Q 001184 458 NDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV----GS 533 (1130)
Q Consensus 458 ~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~----~~ 533 (1130)
+.++|+-+-.. +-++.+.+..|-+-|..+.....|. ..+.|.++.|+... ++++.|+.+|.|..+|++.. ..
T Consensus 215 ~~CawSlni~g-yhfs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~--nLv~~GcRngeI~~iDLR~rnqG~~~ 290 (425)
T KOG2695|consen 215 WSCAWSLNIMG-YHFSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSD--NLVFNGCRNGEIFVIDLRCRNQGNGW 290 (425)
T ss_pred hhhhhhhccce-eeecccccceeEEEEeecccccccc-cchhHHHHHhcccC--CeeEecccCCcEEEEEeeecccCCCc
Confidence 34466654433 2366677788888895554555555 67788888886544 69999999999999999876 23
Q ss_pred eeeecCCCccEEEEEEec-CCCeEEEeeecCCCCcEEEEeeCCCCce---eEEEecccCcee-EEEEEcCCCCEEEEEeC
Q 001184 534 RVDYDAPGLWCTTMLYSA-DGSRLFSCGTSKEGDSHLVEWNESEGAL---KRTYIGFRKKSA-GVVQFDTTRNRILAAGE 608 (1130)
Q Consensus 534 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~ 608 (1130)
....-.|+..|+++..-. ++++|.+.+. +|+|.+||.+--++ ++.+.||.+... .-+.+.+....+++++.
T Consensus 291 ~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M----~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~Gd 366 (425)
T KOG2695|consen 291 CAQRLYHDSSVTSLQILQFSQQKLMASDM----TGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGD 366 (425)
T ss_pred ceEEEEcCcchhhhhhhccccceEeeccC----cCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccC
Confidence 334445777788888776 7777777665 89999999987666 899999866322 22456677789999999
Q ss_pred CCcEEEEeCCCCceeEEEeccC
Q 001184 609 DNQIKFWDMDNVNMLTSTEAEG 630 (1130)
Q Consensus 609 dg~i~vwd~~~~~~~~~~~~~~ 630 (1130)
|-..|||.++.|.++.+++...
T Consensus 367 DcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 367 DCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred eeEEEEEecccCceeeccCCCC
Confidence 9999999999999999887654
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.7e-05 Score=82.18 Aligned_cols=247 Identities=14% Similarity=0.098 Sum_probs=146.0
Q ss_pred CCCCCceeEEEEecCCC-EEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecC
Q 001184 830 ENAEDVVPCVALSKNDS-YVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD 907 (1130)
Q Consensus 830 ~~~~~~i~~l~~s~dg~-~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 907 (1130)
.++...|..++|||..+ ++..++ +.+|.|.|+++..+...+..+ ..+.+++|.-++..++..|..+|.|.|||+...
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 36788999999999888 666677 889999999999999988877 789999999988899999999999999999854
Q ss_pred eE-EEEEec--CCCCeeEEE------EccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCc
Q 001184 908 EV-KTKLKG--HQKHITGLA------FSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV 978 (1130)
Q Consensus 908 ~~-~~~l~~--h~~~V~~l~------~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 978 (1130)
+- +..+.+ ...+|..++ ..+-|.+|+.+..+ +..|++.....-... ...-..++...++++.+-.+
T Consensus 269 ~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~---vlele~pG~cismqy~~~sn 343 (463)
T KOG1645|consen 269 EGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPC---VLELEPPGICISMQYHGVSN 343 (463)
T ss_pred CchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCc---ccccCCCcceeeeeecCccc
Confidence 21 222221 122333333 33446666666655 678887653321111 11112224555666666545
Q ss_pred EEEEEc-C-------CcEEE-EECCCceeeeeeecCC-CC----CCCeEEEEECCCCCEEEEEe-CCCcEEEEeCCCccc
Q 001184 979 RLLVNH-E-------TQLAI-YDGSKMECIRQWVPQD-VL----SSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRL 1043 (1130)
Q Consensus 979 ~l~~~~-d-------~~i~v-~d~~~~~~~~~~~~~~-~~----~~~v~~v~~s~dg~~l~t~~-~Dg~i~vwd~~~~~~ 1043 (1130)
.++++. . ..+-+ -|-.+|..+..-.... +- -..-.++.=.+|..+|+.-+ +-+.+.+||..+++.
T Consensus 344 h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ev 423 (463)
T KOG1645|consen 344 HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEV 423 (463)
T ss_pred eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhhe
Confidence 555431 1 01111 1222333332221111 00 00111222245666555444 557899999999999
Q ss_pred ccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 001184 1044 RCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSE 1094 (1130)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~ 1094 (1130)
..++.... -+.+++....++.-++..-.|..++|++.+.
T Consensus 424 vQ~l~~~e------------pv~Dicp~~~n~~syLa~LTd~~v~Iyk~es 462 (463)
T KOG1645|consen 424 VQTLALSE------------PVLDICPNDTNGSSYLALLTDDRVHIYKNES 462 (463)
T ss_pred eeecccCc------------ceeecceeecCCcchhhheecceEEEEecCC
Confidence 88876332 2334444333333344444466688887643
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00016 Score=85.78 Aligned_cols=279 Identities=13% Similarity=0.174 Sum_probs=159.0
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 426 (1130)
.+.|.++.|.-++.. ++.+..+|.|.+-|.++.... +...-...|.+++||||++.+|.
T Consensus 68 d~~i~s~~fl~d~~~-i~v~~~~G~iilvd~et~~~e--------------------ivg~vd~GI~aaswS~Dee~l~l 126 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNS-ICVITALGDIILVDPETLELE--------------------IVGNVDNGISAASWSPDEELLAL 126 (1265)
T ss_pred CcceEEEEEecccce-EEEEecCCcEEEEccccccee--------------------eeeeccCceEEEeecCCCcEEEE
Confidence 369999999999885 777888999999998876654 23445678999999999999999
Q ss_pred EeCCCeEEEEEecCCccceeeeeeec---CCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEE
Q 001184 427 AFTKHLIHLYTYQGSNDLCQSLEIDA---HVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYS 502 (1130)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~---h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~ 502 (1130)
.+..+++.+-+- +-..+... .+.. ..+..-.+-|-....+ +-|+ .|...--+ ...............=++
T Consensus 127 iT~~~tll~mT~-~f~~i~E~-~L~~d~~~~sk~v~VGwGrkeTq---frgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~ 200 (1265)
T KOG1920|consen 127 ITGRQTLLFMTK-DFEPIAEK-PLDADDERKSKFVNVGWGRKETQ---FRGS-EGRQAARQKIEKEKALEQIEQDDHKTS 200 (1265)
T ss_pred EeCCcEEEEEec-cccchhcc-ccccccccccccceeccccccee---eecc-hhhhcccccccccccccchhhccCCce
Confidence 988887766442 11111100 0100 0111222333222211 1111 01111111 000000000011122234
Q ss_pred EeecccCCccEEEEE-----ecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCC
Q 001184 503 VCPHQKENIHFIFST-----AVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577 (1130)
Q Consensus 503 ~~~~~~~~~~~l~s~-----s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1130)
++| .+||+++++. ...+.|++||-+ +.....-.....--.+++|-|.|..+++.....+ ++.|.++.. +|
T Consensus 201 IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~IvffEr-NG 275 (1265)
T KOG1920|consen 201 ISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDIVFFER-NG 275 (1265)
T ss_pred EEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC-CCcEEEEec-CC
Confidence 666 5777888873 223789999977 2222222222333468999999999998875443 557888874 34
Q ss_pred ceeEEEe--cc-cCceeEEEEEcCCCCEEEE---EeCCCcEEEEeCCCCcee--EEEeccCCCCCcceEEEcCCC-CEEE
Q 001184 578 ALKRTYI--GF-RKKSAGVVQFDTTRNRILA---AGEDNQIKFWDMDNVNML--TSTEAEGGLPSLPRLRFNKEG-NLLV 648 (1130)
Q Consensus 578 ~~~~~~~--~~-~~~~v~~~~~~~~~~~l~~---~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~i~~v~~s~~~-~~l~ 648 (1130)
-.-..|. -. ....+..++|+.++..|++ ......|++|-..+.... +.+..... .-+.|+|.. ..+.
T Consensus 276 L~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~----~~~~W~p~~~~~L~ 351 (1265)
T KOG1920|consen 276 LRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQK----ALLMWDPVTEKTLH 351 (1265)
T ss_pred ccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccc----ccccccCCCceeEE
Confidence 3322221 11 1223788999999998888 455556999998876533 33333322 227888833 3344
Q ss_pred EEeCCCcEEEEEc
Q 001184 649 VTTADQGIKILAN 661 (1130)
Q Consensus 649 ~~~~dg~i~iw~~ 661 (1130)
+...+|...++++
T Consensus 352 v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 352 VLRESGQRLVRDF 364 (1265)
T ss_pred EEecCCcEEEEEE
Confidence 4446777666664
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00014 Score=81.43 Aligned_cols=288 Identities=14% Similarity=0.093 Sum_probs=168.0
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
|...|.--+++-.+++ ++.|+.-|.+++|+-.+++.... ...+-.+.+..+..|++..++|
T Consensus 32 ~~~~v~lTc~dst~~~-l~~GsS~G~lyl~~R~~~~~~~~------------------~~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEY-LAMGSSAGSVYLYNRHTGEMRKL------------------KNEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCce-EEEecccceEEEEecCchhhhcc------------------cccCccceEEEEEecchhHhhh
Confidence 5567777778888885 89999999999999998876542 1223456677888999999999
Q ss_pred EEeCCCeEEEEEecCCccceeeee--e-ecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCC-----eeeEecCCC
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLE--I-DAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGR-----KLFQFEGHE 497 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~--~-~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~-----~~~~~~~h~ 497 (1130)
.|+..|.|.++-+..+........ . ..|...|++++|++|+. .+++|...|.|.+-..+.. ..+.+....
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 999999999999877443222111 1 23778999999999999 7999999999988774331 123334456
Q ss_pred cCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCc--cEEEEEEecC----CCeEEEeeecCCCCcEEEE
Q 001184 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL--WCTTMLYSAD----GSRLFSCGTSKEGDSHLVE 571 (1130)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--~v~~~~~s~~----~~~l~~~~~~~~~~~~i~~ 571 (1130)
+.|..+.+. ++.+|++.. -.. .+++.+...-...-..... .-...+|-|. ..-.+.|+ ....++
T Consensus 171 s~IVQlD~~---q~~LLVStl-~r~-~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~Iyca-----RPG~Rl 240 (726)
T KOG3621|consen 171 SEIVQLDYL---QSYLLVSTL-TRC-ILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCA-----RPGLRL 240 (726)
T ss_pred cceEEeecc---cceehHhhh-hhh-heeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEe-----cCCCce
Confidence 777777653 223333333 222 2344443221111111111 1233444443 33344443 334566
Q ss_pred eeCC-CCceeEEEecc-------------cC---c-------eeEEEE----EcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 001184 572 WNES-EGALKRTYIGF-------------RK---K-------SAGVVQ----FDTTRNRILAAGEDNQIKFWDMDNVNML 623 (1130)
Q Consensus 572 wd~~-~~~~~~~~~~~-------------~~---~-------~v~~~~----~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 623 (1130)
|... .|..+++..-. .. . .-..+. +.-.+.++++-++-| |+|+|.++.+.+
T Consensus 241 Wead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v~ 319 (726)
T KOG3621|consen 241 WEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQVY 319 (726)
T ss_pred EEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceEE
Confidence 6543 24433332100 00 0 000000 111123455555544 899998876655
Q ss_pred EEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhh
Q 001184 624 TSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRA 670 (1130)
Q Consensus 624 ~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 670 (1130)
.-..... .|..++. .++-|++-..|+.+++..+.+..+.+..
T Consensus 320 l~se~~~---DI~dVs~--~~neiFvL~~d~~l~~~sv~s~qr~l~~ 361 (726)
T KOG3621|consen 320 LWSEGGH---DILDVSH--CGNEIFVLNLDRGLKVESVASRQRKLES 361 (726)
T ss_pred EeecCCC---ceeEEee--cCceEEEEecCCceeEEEeehhHHHHHH
Confidence 4432222 4555544 4666778888888888888776554443
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.9e-05 Score=86.81 Aligned_cols=244 Identities=11% Similarity=0.041 Sum_probs=145.1
Q ss_pred cCCCEEEEEe--CCeEEEEECCCceeEEEEeCCC-CCeEEEE-------------------EeCCCCcEE-EEEeCCCcE
Q 001184 843 KNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPP-PASTFLA-------------------FHPQDNNII-AIGMEDSTI 899 (1130)
Q Consensus 843 ~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~-------------------~sp~~~~~l-asg~~dg~v 899 (1130)
-||+++.+-. ...|-..++...++-+.+..+. ..+..++ ++| +++.+ .+.-..+.+
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~Plpn-DGk~l~~~~ey~~~v 217 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPN-DGKDLDDPKKYRSLF 217 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCC-CCCEeecccceeEEE
Confidence 4889998877 4667777777666655444211 1222222 334 44433 223344667
Q ss_pred EEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCC----cEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcC
Q 001184 900 QIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDA----QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHS 975 (1130)
Q Consensus 900 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 975 (1130)
.+.|.++.+...++..-. ....++++|||+++++.+.+. ++..-+... ......+... ..-++.+
T Consensus 218 SvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e--~d~~vvfni~--------~iea~vk 286 (635)
T PRK02888 218 TAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE--RDWVVVFNIA--------RIEEAVK 286 (635)
T ss_pred EEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeecccc--CceEEEEchH--------HHHHhhh
Confidence 788888777766655322 446789999999998886322 222222211 1000000000 0013456
Q ss_pred CCcEEEEEcCCcEEEEECCC----c-eeeeeeecCCCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEeCCCccccc--cc
Q 001184 976 DQVRLLVNHETQLAIYDGSK----M-ECIRQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRLRC--RI 1047 (1130)
Q Consensus 976 d~~~l~~~~d~~i~v~d~~~----~-~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~-~Dg~i~vwd~~~~~~~~--~~ 1047 (1130)
+|++..+ .+++|.+.|..+ + +.+..+.. ......+.+||||+++++++ .+.+|.|.|+.+.+... .+
T Consensus 287 dGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPV----GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 287 AGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPV----PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI 361 (635)
T ss_pred CCCEEEE-CCCEEEEEECCccccCCcceEEEEEC----CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence 7887766 467899999998 3 44454444 35778999999999888777 58999999999866421 11
Q ss_pred CCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC------CccCCcccccCC
Q 001184 1048 APSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSE------TERKWGVAVPVD 1106 (1130)
Q Consensus 1048 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~------~~~~w~~~~p~~ 1106 (1130)
.....+... ..-...++..+|.+ +++..+|-..|..|..|++.+ ++..|.+..-++
T Consensus 362 ~~~~~vvae--vevGlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~d 423 (635)
T PRK02888 362 KPRDAVVAE--PELGLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLD 423 (635)
T ss_pred CccceEEEe--eccCCCcceEEECC-CCCEEEeEeecceeEEEehHHHHHHhccccCCcceeccc
Confidence 111100000 00123456688877 478899999999999999986 444465554443
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.02 Score=67.33 Aligned_cols=637 Identities=12% Similarity=0.081 Sum_probs=299.7
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC----
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD---- 420 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd---- 420 (1130)
+...-..|+.+-++| +|++||.-|.=.+-.+.+......+ .. ....+ ..-++|..++.-.+
T Consensus 304 ge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gsy-~~-----------ilet~-~NLgPI~Dm~Vvd~d~q~ 368 (1096)
T KOG1897|consen 304 GETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGSY-VV-----------ILETF-VNLGPIVDMCVVDLDRQG 368 (1096)
T ss_pred CCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCch-hh-----------hhhhc-ccccceeeEEEEeccccC
Confidence 344445666677777 5888988776566665543222100 00 00001 12246666665432
Q ss_pred CCEEEEEe---CCCeEEEEEecCCccceeeeeeecCCCCeeEEE--EecCCCceEEEEEcCCCcEEEEecCCCeeeE-ec
Q 001184 421 GNFIGVAF---TKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLA--FSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQ-FE 494 (1130)
Q Consensus 421 g~~las~~---~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~--~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~-~~ 494 (1130)
+..+++|+ .||++++..-.-+-.......+.| -..++.+. +.++-...++++-. +.-++...+++...+ ..
T Consensus 369 q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~--~eTrvl~i~~e~ee~~~~ 445 (1096)
T KOG1897|consen 369 QGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFI--SETRVLNISEEVEETEDP 445 (1096)
T ss_pred CceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEec--cceEEEEEccceEEeccc
Confidence 23455553 478898876543322222234555 34577777 44433321333332 223444434432111 11
Q ss_pred CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeC
Q 001184 495 GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE 574 (1130)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1130)
+.......+..+.- +++.|+-.. ...||+++-. .....+..... ++..+.+.+...++.++. ++.+...++
T Consensus 446 gf~~~~~Tif~S~i-~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~~-~ti~~~~~n~sqVvvA~~----~~~l~y~~i 516 (1096)
T KOG1897|consen 446 GFSTDEQTIFCSTI-NGNQLVQVT-SNSIRLVSSA--GLRSEWRPPGK-ITIGVVSANASQVVVAGG----GLALFYLEI 516 (1096)
T ss_pred cccccCceEEEEcc-CCceEEEEe-cccEEEEcch--hhhhcccCCCc-eEEEEEeecceEEEEecC----ccEEEEEEe
Confidence 22222222222211 112222211 2345555433 22223333333 333333444445555542 455666666
Q ss_pred CCCceeEEEecccCceeEEEEEcCCC---C---EEEEEeCCCcEEEEe-CCCCceeEEEeccC--CCCCcceEEEcCCCC
Q 001184 575 SEGALKRTYIGFRKKSAGVVQFDTTR---N---RILAAGEDNQIKFWD-MDNVNMLTSTEAEG--GLPSLPRLRFNKEGN 645 (1130)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~~~~~---~---~l~~~~~dg~i~vwd-~~~~~~~~~~~~~~--~~~~i~~v~~s~~~~ 645 (1130)
..+.+.......-...+.|+.++|-+ + +++.|..+..+.+.- ......+....... -...|.-..+-.|..
T Consensus 517 ~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~ 596 (1096)
T KOG1897|consen 517 EDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIH 596 (1096)
T ss_pred eccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccce
Confidence 65554333333334478899888753 2 677787766555443 33343333322221 112344455556688
Q ss_pred EEEEEeCCCcEEEEEcCCCchhhhhhcccccccc-cccccccccccceeeccc--cccccccccC-CCCCC-----CCcc
Q 001184 646 LLVVTTADQGIKILANADGLRALRAIETRAYETS-RASTEMKVPGSAVVTTIT--PVLSKAERVD-RSSPA-----RPST 716 (1130)
Q Consensus 646 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s--p~~~~~~~~~-~~~~~-----~~~~ 716 (1130)
+|.++..||.+.-+.++...-.....+....... .....+.......+.+.+ |.......++ ...|. ....
T Consensus 597 yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c 676 (1096)
T KOG1897|consen 597 YLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMC 676 (1096)
T ss_pred EEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhc
Confidence 9999999999887766443222221111000000 000001111111111111 1100000000 00000 0000
Q ss_pred cccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeec
Q 001184 717 ILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKW 796 (1130)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~ 796 (1130)
.+.. ..-+..++.+ ..+.+++..++.... ....++|. ......+++.+....+.+.+.......
T Consensus 677 ~f~s-----~a~~d~l~~~-~~~~l~i~tid~iqk---l~irtvpl----~~~prrI~~q~~sl~~~v~s~r~e~~~--- 740 (1096)
T KOG1897|consen 677 PFNS-----DAYPDSLASA-NGGALTIGTIDEIQK---LHIRTVPL----GESPRRICYQESSLTFGVLSNRIESSA--- 740 (1096)
T ss_pred cccc-----ccCCceEEEe-cCCceEEEEecchhh---cceeeecC----CCChhheEecccceEEEEEecccccch---
Confidence 0100 0001112222 224555555554332 11112232 233455666664443333333211110
Q ss_pred CCCCCCCCcccccccccccccCCCCcceeccCCC--CCCCceeEEEEecC-CCEEEEEe-----------CCeEEEEECC
Q 001184 797 NRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPE--NAEDVVPCVALSKN-DSYVMSAG-----------GGKVSLFNMM 862 (1130)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~--~~~~~i~~l~~s~d-g~~la~~~-----------dg~i~iwd~~ 862 (1130)
.. .+.......++++|.++-+.+...-.. .....+.++.|..| +.++++|. .|.|.+|...
T Consensus 741 ----~~-~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~ 815 (1096)
T KOG1897|consen 741 ----EY-YGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFE 815 (1096)
T ss_pred ----hh-cCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEe
Confidence 00 011111123456676666544422111 11223444557777 77887763 2778888877
Q ss_pred CceeEEEEeCC--CCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCc
Q 001184 863 NFKVMTTFMSP--PPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQ 940 (1130)
Q Consensus 863 ~~~~~~~~~~~--~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~ 940 (1130)
.+..+.....+ .+.+.++..- ++++|| +-+..|++|+..+.+.++.-..|..++..+...-.|..++.|+--+.
T Consensus 816 e~~~L~~v~e~~v~Gav~aL~~f--ngkllA--~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S 891 (1096)
T KOG1897|consen 816 ELNSLELVAETVVKGAVYALVEF--NGKLLA--GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRS 891 (1096)
T ss_pred cCCceeeeeeeeeccceeehhhh--CCeEEE--ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccce
Confidence 64443333222 3445555433 567775 34678999999999777777788999999999999999999998888
Q ss_pred EEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCc----------eeeeeeecC-----
Q 001184 941 LIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKM----------ECIRQWVPQ----- 1005 (1130)
Q Consensus 941 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~----------~~~~~~~~~----- 1005 (1130)
+.+--.+..+. ........-.+...+++.+-.+..++.+-.++.+.+....+. +....|..+
T Consensus 892 itll~y~~~eg---~f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~ 968 (1096)
T KOG1897|consen 892 ITLLQYKGDEG---NFEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNK 968 (1096)
T ss_pred EEEEEEeccCC---ceEEeehhhCccceeeEEEecCceEEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceee
Confidence 77665554321 122233333446778888888888887766666665543321 011111111
Q ss_pred CCCCCCeEE--EEECCCCCEEEEEeCCCcEEEE
Q 001184 1006 DVLSSPISS--AAYSCNSQLIYATFTDGSIGVF 1036 (1130)
Q Consensus 1006 ~~~~~~v~~--v~~s~dg~~l~t~~~Dg~i~vw 1036 (1130)
..|..-|.. -..+|-+.-+..|..+|.|-+-
T Consensus 969 f~hg~lv~~~~~s~~~~~~~vlfgTv~GsIG~i 1001 (1096)
T KOG1897|consen 969 FRHGSLVMQLGDSMIPLEPKVLFGTVNGSIGII 1001 (1096)
T ss_pred eeecceEeeccccccCCCCcEEEEEccceEEEE
Confidence 111223333 1334555567778889988766
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00013 Score=81.51 Aligned_cols=298 Identities=13% Similarity=0.112 Sum_probs=158.4
Q ss_pred cCCCCEEEEE---------eCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchh
Q 001184 597 DTTRNRILAA---------GEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRA 667 (1130)
Q Consensus 597 ~~~~~~l~~~---------~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 667 (1130)
|||+++++.. +..+.+.++|+.+++....... ...+....|||+|+.++... ++.|.+++..++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~---~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP---PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E---ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC---ccccccceeecCCCeeEEEe-cCceEEEECCCCCeE
Confidence 5677766663 2346799999999766554433 23688999999999998885 578999887666221
Q ss_pred hhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeec
Q 001184 668 LRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELT 747 (1130)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~ 747 (1130)
.-+..+ ...+. .|- --|-..
T Consensus 77 ~lT~dg-~~~i~------------------------------------------------------nG~-----~dwvye 96 (353)
T PF00930_consen 77 QLTTDG-EPGIY------------------------------------------------------NGV-----PDWVYE 96 (353)
T ss_dssp ESES---TTTEE------------------------------------------------------ESB-------HHHH
T ss_pred Eecccc-ceeEE------------------------------------------------------cCc-----cceecc
Confidence 111111 00000 000 001110
Q ss_pred cccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeC-CeEEeeecC---CCCC----------CCCccccccccc
Q 001184 748 EIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSN-GVQKLWKWN---RTEQ----------NPSGKATAAVAP 813 (1130)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~iw~~~---~~~~----------~~~~~~~~~~~~ 813 (1130)
+. --+.-..+.|||||++|+...-| ..+..+.+. .... ...|.......+
T Consensus 97 EE----------------v~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l 160 (353)
T PF00930_consen 97 EE----------------VFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSL 160 (353)
T ss_dssp HH----------------TSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEE
T ss_pred cc----------------ccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEE
Confidence 00 01122457788888887776653 333333222 1110 112333344456
Q ss_pred ccccCCCCcceeccCC---CCCCCceeEEEEecCCCEEE-EEe--C-C--eEEEEECCCceeEEEEeC-CCC---CeEEE
Q 001184 814 QHWQPSNGLLMTNDVP---ENAEDVVPCVALSKNDSYVM-SAG--G-G--KVSLFNMMNFKVMTTFMS-PPP---ASTFL 880 (1130)
Q Consensus 814 ~~w~~~~~~~~~~~~~---~~~~~~i~~l~~s~dg~~la-~~~--d-g--~i~iwd~~~~~~~~~~~~-~~~---~i~~l 880 (1130)
.++++.+++......+ .....-+..+.|+++++.|+ .-. + . .+.+.|..++.+...... ... .....
T Consensus 161 ~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~ 240 (353)
T PF00930_consen 161 FVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPP 240 (353)
T ss_dssp EEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEE
T ss_pred EEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeeccc
Confidence 6788888876543333 23466788999999999444 333 2 2 377778877665444332 122 23355
Q ss_pred EEe-CCCCcEEEEEeCCCcEEEEEee--cCeEEEEEecCCCCeeE-EEEccCCCeEE-EEeCC--C--cEEEEECC-CCc
Q 001184 881 AFH-PQDNNIIAIGMEDSTIQIYNVR--VDEVKTKLKGHQKHITG-LAFSTNLNILV-SSGSD--A--QLIFWNTD-TWE 950 (1130)
Q Consensus 881 ~~s-p~~~~~lasg~~dg~v~iwd~~--~~~~~~~l~~h~~~V~~-l~~s~dg~~L~-s~s~D--g--~i~vwd~~-~~~ 950 (1130)
.|. +++..+|.....||.-+||-+. ++. ...+....-.|+. +.++++++.+. ++..+ + .|..-+++ .++
T Consensus 241 ~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~ 319 (353)
T PF00930_consen 241 HFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE 319 (353)
T ss_dssp EE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE
T ss_pred ccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC
Confidence 665 6577777777788876666554 444 4466655666755 67888877665 44442 2 34444555 222
Q ss_pred ccceeeEeccCCCCCCCeEEEEEcCCCcEEEE
Q 001184 951 KRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1130)
Q Consensus 951 ~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 982 (1130)
. ..+... . .....+.|||+|++++.
T Consensus 320 ~-----~~LT~~-~-~~~~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 320 P-----KCLTCE-D-GDHYSASFSPDGKYYVD 344 (353)
T ss_dssp E-----EESSTT-S-STTEEEEE-TTSSEEEE
T ss_pred e-----EeccCC-C-CCceEEEECCCCCEEEE
Confidence 1 111111 1 11168999999999886
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00032 Score=80.17 Aligned_cols=203 Identities=17% Similarity=0.184 Sum_probs=137.1
Q ss_pred EEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCC-eEEEEEeCCCCcEEEEEeCCC-----cEEEEEeecC----
Q 001184 839 VALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPA-STFLAFHPQDNNIIAIGMEDS-----TIQIYNVRVD---- 907 (1130)
Q Consensus 839 l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~-i~~l~~sp~~~~~lasg~~dg-----~v~iwd~~~~---- 907 (1130)
-++++.+..++.|+ +|.|.+.+- +.+.+..++.+... |+.+.... +..+|++-++|+ .|+||+++.-
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 35678888899988 898888875 33455667766666 55555544 556777777665 4899998732
Q ss_pred --eEEE--EEec-----CCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCc
Q 001184 908 --EVKT--KLKG-----HQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV 978 (1130)
Q Consensus 908 --~~~~--~l~~-----h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 978 (1130)
.++. .+.. ...++.+++.+.+-+.+|+|-.||.|..+.-+--+.+.... ...+....+|+.+++-.|+.
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~--~~~~~~~~pITgL~~~~d~~ 184 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQ--DYSHRGKEPITGLALRSDGK 184 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccce--eeeccCCCCceeeEEecCCc
Confidence 2331 2222 35678899999999999999999999998655433332222 22223347899999999998
Q ss_pred E-EEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccC
Q 001184 979 R-LLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIA 1048 (1130)
Q Consensus 979 ~-l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~ 1048 (1130)
- +.+.....|.+|.+.. +. ........|+.++.|..|++-..-+++++ +..+.+|+.........+.
T Consensus 185 s~lFv~Tt~~V~~y~l~g-r~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 185 SVLFVATTEQVMLYSLSG-RT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred eeEEEEecceeEEEEecC-CC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 7 5557788899999984 33 22222344478899999987655355555 4679999988555444443
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0077 Score=64.83 Aligned_cols=279 Identities=14% Similarity=0.081 Sum_probs=137.2
Q ss_pred EEecCCCeEEEEEeCcCe--EEEEeCCCCceeecccceeeeccccccceeeeeecCC-CccEEEEEEcCCCCEEEEEeCC
Q 001184 354 DFHPFHHTLLVVGCGDGE--ITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDS-SISVSRVAWSPDGNFIGVAFTK 430 (1130)
Q Consensus 354 ~fspdg~~llasg~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~spdg~~las~~~d 430 (1130)
+|.+||++||+.+..||. +.+.|+.+++... +... ........++|+++.++.....
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~~ 101 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKNG 101 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEETT
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEECC
Confidence 578999988988877764 6677888887653 2222 1223356778999988877666
Q ss_pred CeEEEEEecCCccceeeeeeecCCCCeeEEEEe--cCCCceEEEEEc---CC-------------------CcEEEEecC
Q 001184 431 HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFS--YPNKQLCIVTCG---DD-------------------KLIRVWDLS 486 (1130)
Q Consensus 431 ~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s--~d~~~l~l~s~s---~d-------------------~~v~iwd~~ 486 (1130)
..|+--|+++.+.. . .+......+-...|. .|+. .++..- .| +.|.--|..
T Consensus 102 ~~l~~vdL~T~e~~-~--vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~ 176 (386)
T PF14583_consen 102 RSLRRVDLDTLEER-V--VYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK 176 (386)
T ss_dssp TEEEEEETTT--EE-E--EEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT
T ss_pred CeEEEEECCcCcEE-E--EEECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC
Confidence 78999999886632 2 234445556556664 3444 333221 11 123333422
Q ss_pred CCeeeEecCCCcCEEEEeecccCCccEEEEEec---CC-cEEEEEccCCccee-ee--cCCCccEEEEEEecCCCeEEEe
Q 001184 487 GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV---DG-KIKAWLYDNVGSRV-DY--DAPGLWCTTMLYSADGSRLFSC 559 (1130)
Q Consensus 487 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~---dg-~i~vwd~~~~~~~~-~~--~~~~~~v~~~~~s~~~~~l~~~ 559 (1130)
+.....+..-...+..+.|+|... .+|.-|-+ +. .-|||-+++..... .+ ......+..=-|.|||..+...
T Consensus 177 tG~~~~v~~~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~ 255 (386)
T PF14583_consen 177 TGERKVVFEDTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYD 255 (386)
T ss_dssp T--EEEEEEESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEE
T ss_pred CCceeEEEecCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEE
Confidence 233333333455667777877543 34444422 22 13667665433322 11 1223456667799999988775
Q ss_pred ee-cCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCC----------------CcEEEEeCCCCce
Q 001184 560 GT-SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED----------------NQIKFWDMDNVNM 622 (1130)
Q Consensus 560 ~~-~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------------g~i~vwd~~~~~~ 622 (1130)
+. .+..+..|.-+|..+++........ ...-.-.++||++++.=+.| --|+++++..++.
T Consensus 256 ~~~~~~~~~~i~~~d~~t~~~~~~~~~p---~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~ 332 (386)
T PF14583_consen 256 SYTPGGQDFWIAGYDPDTGERRRLMEMP---WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRF 332 (386)
T ss_dssp EEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEE
T ss_pred eecCCCCceEEEeeCCCCCCceEEEeCC---ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCce
Confidence 54 2333667888899888665433321 23345567888877663332 2567788887765
Q ss_pred eEEEecc--------CCCCCcceEEEcCCCCEEEEEe-CCCcEEEEEc
Q 001184 623 LTSTEAE--------GGLPSLPRLRFNKEGNLLVVTT-ADQGIKILAN 661 (1130)
Q Consensus 623 ~~~~~~~--------~~~~~i~~v~~s~~~~~l~~~~-~dg~i~iw~~ 661 (1130)
....... .....-....|+|||++++..+ ..|...||-+
T Consensus 333 ~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 333 RKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred eeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 4322211 0011235689999999876655 4666666644
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.13 E-value=9.8e-06 Score=56.82 Aligned_cols=39 Identities=31% Similarity=0.528 Sum_probs=36.8
Q ss_pred ceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEE
Q 001184 864 FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYN 903 (1130)
Q Consensus 864 ~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd 903 (1130)
++++.++.+|...|.+++|+| ++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 467899999999999999999 899999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00011 Score=83.07 Aligned_cols=189 Identities=17% Similarity=0.222 Sum_probs=129.0
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccce
Q 001184 875 PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS 954 (1130)
Q Consensus 875 ~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~ 954 (1130)
..++|++++ +++++-|+.+|.|++++.+..- .+...|+.. ..+|.+++||+.||+|.|-.+.+.+....
T Consensus 40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVH---DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hHHHHHHhh---cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 456777774 4799999999999999987443 333345443 55799999999999999999988665433
Q ss_pred eeEeccCCCCCCCeEEEEEcCC-----CcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeC
Q 001184 955 IAIQLPAGKLPVGETRVQFHSD-----QVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFT 1029 (1130)
Q Consensus 955 ~~~~~~~~~~~~~v~~~~~s~d-----~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~ 1029 (1130)
.... .++.+++++|| .+.++++....+.++.-.-..-......+ ...++|.++.|. |.++|=++.
T Consensus 109 ~df~-------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~-~~eG~I~~i~W~--g~lIAWand 178 (846)
T KOG2066|consen 109 YDFK-------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLS-EGEGPIHSIKWR--GNLIAWAND 178 (846)
T ss_pred EecC-------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeee-cCccceEEEEec--CcEEEEecC
Confidence 3322 67889999998 44555554444777765422222222121 126899999996 778888775
Q ss_pred CCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 001184 1030 DGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1093 (1130)
Q Consensus 1030 Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~ 1093 (1130)
+| |+|||..+++.+..+.+....+ ......-.+.|.+. ..|+.|=.| +|++..+.
T Consensus 179 ~G-v~vyd~~~~~~l~~i~~p~~~~-----R~e~fpphl~W~~~--~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 179 DG-VKVYDTPTRQRLTNIPPPSQSV-----RPELFPPHLHWQDE--DRLVIGWGD-SVKICSIK 233 (846)
T ss_pred CC-cEEEeccccceeeccCCCCCCC-----CcccCCCceEecCC--CeEEEecCC-eEEEEEEe
Confidence 55 8999999999998887655221 12234445778764 566665544 48888887
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00066 Score=77.73 Aligned_cols=201 Identities=13% Similarity=0.147 Sum_probs=129.8
Q ss_pred EEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCC-CEEEEEeCCC-
Q 001184 354 DFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG-NFIGVAFTKH- 431 (1130)
Q Consensus 354 ~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~las~~~d~- 431 (1130)
+|++.+. .+|.|+.+|.|.+.+-. -... . -+..+...|...-|.-++ .+|++.+.|+
T Consensus 30 c~~s~~~-~vvigt~~G~V~~Ln~s--~~~~-~-----------------~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~ 88 (933)
T KOG2114|consen 30 CCSSSTG-SVVIGTADGRVVILNSS--FQLI-R-----------------GFQAYEQSIVQFLYILNKQNFLFSVGEDEQ 88 (933)
T ss_pred EEcCCCc-eEEEeeccccEEEeccc--ceee-e-----------------hheecchhhhhHhhcccCceEEEEEeecCC
Confidence 3567666 59999999988877643 2110 0 133444443333344444 6788777664
Q ss_pred ----eEEEEEecCCccce---ee--eeeec-----CCCCeeEEEEecCCCceEEEEEcCCCcEEEEe---c--CCCeeeE
Q 001184 432 ----LIHLYTYQGSNDLC---QS--LEIDA-----HVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD---L--SGRKLFQ 492 (1130)
Q Consensus 432 ----~i~vwd~~~~~~~~---~~--~~~~~-----h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd---~--~~~~~~~ 492 (1130)
.++|||++.-+.-. .. ..+.+ ...++.+++.+.+-+ .+|.|-.+|.|..+. . .|....-
T Consensus 89 ~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~--~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~ 166 (933)
T KOG2114|consen 89 GNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK--TIVCGFTNGLVICYKGDILRDRGSRQDY 166 (933)
T ss_pred CCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc--EEEEEecCcEEEEEcCcchhccccceee
Confidence 58999986431111 11 11222 355789999999977 789999999999886 1 2332233
Q ss_pred ecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCccee-eecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEE
Q 001184 493 FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV-DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1130)
Q Consensus 493 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1130)
...-..+|+.+++...+ ..++-...-..|.+|.+....+.. .+..++....|..+++....+++++ ...+++
T Consensus 167 ~~~~~~pITgL~~~~d~--~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-----~e~l~f 239 (933)
T KOG2114|consen 167 SHRGKEPITGLALRSDG--KSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-----SEFLYF 239 (933)
T ss_pred eccCCCCceeeEEecCC--ceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-----CceEEE
Confidence 33456799999986544 332333345678999988655333 4777888999999998777566665 568999
Q ss_pred eeCCCCceeEEEe
Q 001184 572 WNESEGALKRTYI 584 (1130)
Q Consensus 572 wd~~~~~~~~~~~ 584 (1130)
|+.........+.
T Consensus 240 Y~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 240 YDSDGRGPCFAFE 252 (933)
T ss_pred EcCCCcceeeeec
Confidence 9987666666665
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0018 Score=75.71 Aligned_cols=240 Identities=11% Similarity=0.136 Sum_probs=139.3
Q ss_pred CEEEEEe-CCeEEEEECCCceeEEEEeCCCCC-----e-EEEEEeCCCCcEEEEEe---------CCCcEEEEEeecCeE
Q 001184 846 SYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPA-----S-TFLAFHPQDNNIIAIGM---------EDSTIQIYNVRVDEV 909 (1130)
Q Consensus 846 ~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~-----i-~~l~~sp~~~~~lasg~---------~dg~v~iwd~~~~~~ 909 (1130)
..++.++ +|.|..+|.++++.+-.+...... + .+..+. + .++++++ .+|.|+-+|..+|+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 4455554 899999999999999887643321 1 122232 2 3444554 367899999999988
Q ss_pred EEEEecCCC--------------------Ce-eEEEEccCCCeEEEEeCCC------------------cEEEEECCCCc
Q 001184 910 KTKLKGHQK--------------------HI-TGLAFSTNLNILVSSGSDA------------------QLIFWNTDTWE 950 (1130)
Q Consensus 910 ~~~l~~h~~--------------------~V-~~l~~s~dg~~L~s~s~Dg------------------~i~vwd~~~~~ 950 (1130)
+-++..... .| ...++.+.+..++.++.++ .|.-.|+++++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 776653211 11 1244555567788777665 68888999887
Q ss_pred ccceeeEeccC-----CCCCCCeEEEEEcCCCc---EEEE-EcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCC
Q 001184 951 KRKSIAIQLPA-----GKLPVGETRVQFHSDQV---RLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNS 1021 (1130)
Q Consensus 951 ~~~~~~~~~~~-----~~~~~~v~~~~~s~d~~---~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg 1021 (1130)
..-........ ......+..+. .-+|. .+++ +.++.+...|..+|+.+-..... ...++.+|
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~------~~~~~~~~-- 338 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV------EQPMAYDP-- 338 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee------ccccccCC--
Confidence 64332211110 00000111111 12333 3344 56899999999999988765432 11233344
Q ss_pred CEEEEE------------------eCCCcEEEEeCCCcccccccCCCcccccCCCCCcee--eeEEEEEcCCCCCEEEEE
Q 001184 1022 QLIYAT------------------FTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTV--FPLVVTSHPQEPNQLAVG 1081 (1130)
Q Consensus 1022 ~~l~t~------------------~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~s~ 1081 (1130)
..++.+ ..+|.+.-.|+.+|+.+-+.......... ..+... .++.+ .+.+|+++
T Consensus 339 ~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~-~~g~~~~~~~~~~-----~g~~v~~g 412 (488)
T cd00216 339 GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSW-NIGFPHWGGSLAT-----AGNLVFAG 412 (488)
T ss_pred ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCcccccc-ccCCcccCcceEe-----cCCeEEEE
Confidence 223332 23578888899998877665533100000 000000 11112 35688999
Q ss_pred eCCCcEEEEeCCCCccCCcccc
Q 001184 1082 LTDGSVKVIEPSETERKWGVAV 1103 (1130)
Q Consensus 1082 ~~Dg~v~vW~~~~~~~~w~~~~ 1103 (1130)
+.||.|.-+|..+++..|....
T Consensus 413 ~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 413 AADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred CCCCeEEEEECCCCceeeEEEC
Confidence 9999999999999999998765
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.5e-06 Score=51.25 Aligned_cols=27 Identities=33% Similarity=0.537 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhhhccHHHHHHHHHHhc
Q 001184 6 RELVFLILQFLDEEKFKESVHRLEQES 32 (1130)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Es 32 (1130)
+++++||++||.+.||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 579999999999999999999999997
|
The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.06 E-value=7.8e-05 Score=85.25 Aligned_cols=181 Identities=8% Similarity=0.101 Sum_probs=130.4
Q ss_pred CCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCc
Q 001184 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA 498 (1130)
Q Consensus 420 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~ 498 (1130)
++..++.|+....+..+|+.+.+..+. ..-..+.|.-+.. +++ .+.+|...|+|.+-| .+-+.++++..|++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~---~~v~a~~v~imR~--Nnr--~lf~G~t~G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRT---TNVSASGVTIMRY--NNR--NLFCGDTRGTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeee---eeccCCceEEEEe--cCc--EEEeecccceEEeecCCcCceeeeeecccc
Confidence 455777788888899999998775542 2222223544443 466 799999999999999 88999999999999
Q ss_pred CEEEEeecccCCccEEEEEec---------CCcEEEEEccCCcceeeecCCCccEEEEEEecC-CCeEEEeeecCCCCcE
Q 001184 499 PVYSVCPHQKENIHFIFSTAV---------DGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSAD-GSRLFSCGTSKEGDSH 568 (1130)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~---------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~ 568 (1130)
.|..+.. .|+.|+++|. |.-|+|||++..+.+..+..+..+ .-+.|.|. ...+++++. .|+
T Consensus 219 siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~----sGq 289 (1118)
T KOG1275|consen 219 SISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQ----SGQ 289 (1118)
T ss_pred ceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEec----ccc
Confidence 9998865 4478888875 566899999988777665555443 44666764 344555554 778
Q ss_pred EEEeeC---CCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001184 569 LVEWNE---SEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWD 616 (1130)
Q Consensus 569 i~~wd~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 616 (1130)
..+-|. .+...-.......+..+..++++++++.++.|..+|.|.+|.
T Consensus 290 ~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 290 FQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 888883 222221222222333588899999999999999999999997
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0045 Score=72.28 Aligned_cols=110 Identities=12% Similarity=0.076 Sum_probs=67.5
Q ss_pred cEEEEEecCCcEEEEEccCCcceeeecCCCc------cE--EEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEE
Q 001184 512 HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL------WC--TTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1130)
Q Consensus 512 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~------~v--~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1130)
..++.++.++.+.-.|..+++....+..... .+ ..+.+. ++..++.+.. ++.|+-+|.++|+.+..+
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~----~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTF----DGRLVALDAETGKQVWKF 136 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecC----CCeEEEEECCCCCEeeee
Confidence 3566777788888888888777766544322 00 011111 2245555543 889999999999998777
Q ss_pred ecccCc----eeE-EEEEcCCCCEEEEEe---------CCCcEEEEeCCCCceeEEEec
Q 001184 584 IGFRKK----SAG-VVQFDTTRNRILAAG---------EDNQIKFWDMDNVNMLTSTEA 628 (1130)
Q Consensus 584 ~~~~~~----~v~-~~~~~~~~~~l~~~~---------~dg~i~vwd~~~~~~~~~~~~ 628 (1130)
...... .+. ...+. +..++.++ .+|.++.+|..+|+.+-....
T Consensus 137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 643220 011 11222 24555553 368899999999998877655
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0025 Score=68.45 Aligned_cols=285 Identities=14% Similarity=0.080 Sum_probs=142.5
Q ss_pred EEEEEeccCCeEEEeee-CCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEE
Q 001184 771 ARLLYTNSGIGILALWS-NGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVM 849 (1130)
Q Consensus 771 ~~l~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la 849 (1130)
..=+|.++|+.|+.++. +|.-.+|-+ |+.+++..+. ..+.........++++.+.++
T Consensus 39 ~~~~ft~dG~kllF~s~~dg~~nly~l--------------------DL~t~~i~QL--Tdg~g~~~~g~~~s~~~~~~~ 96 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDGNRNLYLL--------------------DLATGEITQL--TDGPGDNTFGGFLSPDDRALY 96 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTSS-EEEEE--------------------ETTT-EEEE-----SS-B-TTT-EE-TTSSEEE
T ss_pred cCCCcCCCCCEEEEEeccCCCcceEEE--------------------EcccCEEEEC--ccCCCCCccceEEecCCCeEE
Confidence 34567899988888776 555555532 4455554442 222222233466778888876
Q ss_pred EEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeC-CCCcEEEEEeC----------------------CCcEEEEEee
Q 001184 850 SAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHP-QDNNIIAIGME----------------------DSTIQIYNVR 905 (1130)
Q Consensus 850 ~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp-~~~~~lasg~~----------------------dg~v~iwd~~ 905 (1130)
... +..|+-.|+.+.+....+..+...+-...|.. .++..++-.-. ...|.-.|+.
T Consensus 97 Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~ 176 (386)
T PF14583_consen 97 YVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK 176 (386)
T ss_dssp EEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT
T ss_pred EEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC
Confidence 654 67899999999988777776666665566643 24555432211 1235556777
Q ss_pred cCeEEEEEecCCCCeeEEEEccCCCeEEEEeC----CCc-EEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEE
Q 001184 906 VDEVKTKLKGHQKHITGLAFSTNLNILVSSGS----DAQ-LIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRL 980 (1130)
Q Consensus 906 ~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~----Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 980 (1130)
+|+....+. -...+..+.|||....++.=+. |.. -+||-+.+....... +........+..=.|+|||..+
T Consensus 177 tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~---v~~~~~~e~~gHEfw~~DG~~i 252 (386)
T PF14583_consen 177 TGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKK---VHRRMEGESVGHEFWVPDGSTI 252 (386)
T ss_dssp T--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EE---SS---TTEEEEEEEE-TTSS-E
T ss_pred CCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCccee---eecCCCCcccccccccCCCCEE
Confidence 777655554 3456778999997665555443 322 367777653322111 1122223566677899999987
Q ss_pred EE-E-----cCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCC----------------cEEEEeC
Q 001184 981 LV-N-----HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG----------------SIGVFDA 1038 (1130)
Q Consensus 981 ~~-~-----~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg----------------~i~vwd~ 1038 (1130)
.. + .+..|.-+|+.+++....... ......-.++||++++-=+.|. .|+++++
T Consensus 253 ~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~ 327 (386)
T PF14583_consen 253 WYDSYTPGGQDFWIAGYDPDTGERRRLMEM-----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDV 327 (386)
T ss_dssp EEEEEETTT--EEEEEE-TTT--EEEEEEE------SEEEEEE-TTSSEEEEEE-------------------EEEEEET
T ss_pred EEEeecCCCCceEEEeeCCCCCCceEEEeC-----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEecc
Confidence 75 2 244577788888866443222 2455666789999887655442 5677888
Q ss_pred CCcccccccCCC--ccccc-C--CCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 001184 1039 DSLRLRCRIAPS--AYMSQ-A--SPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEP 1092 (1130)
Q Consensus 1039 ~~~~~~~~~~~~--~~~~~-~--~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~ 1092 (1130)
+.++......+. ..+.. . ..|.| ..|+|++...|.++...|...|+-+
T Consensus 328 ~~~~~~~l~~h~~sw~v~~~~~q~~hPh------p~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 328 EAGRFRKLARHDTSWKVLDGDRQVTHPH------PSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp TTTEEEEEEE-------BTTBSSTT----------EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred ccCceeeeeeccCcceeecCCCccCCCC------CccCCCCCEEEEECCCCCCccEEEE
Confidence 877653222111 00000 0 01333 7899976666667777887776644
|
|
| >smart00668 CTLH C-terminal to LisH motif | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.3e-06 Score=64.85 Aligned_cols=53 Identities=38% Similarity=0.537 Sum_probs=42.8
Q ss_pred cHHHHHHHHhccCHHHHHHHhccCCCcCCCccchhhhHHHHHhHHHHHHhcCCH
Q 001184 37 NMKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRHDR 90 (1130)
Q Consensus 37 ~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lell~~~~~ 90 (1130)
++..++++|+.|+|++|++.++..........+ .+.|.|++|+|+||++.++.
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 367899999999999999999888443322223 49999999999999998764
|
Alpha-helical motif of unknown function. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0059 Score=70.38 Aligned_cols=251 Identities=15% Similarity=0.070 Sum_probs=135.3
Q ss_pred CEEEEEEecCCCeEEEEEeCcC----eEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 349 SVVSMDFHPFHHTLLVVGCGDG----EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 349 ~V~~v~fspdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
.+..+++||||++++++-+..| .+++.|+.+|+.+.. . +.. ..-.+++|.+|++.|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~-----------------i~~--~~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-G-----------------IEN--PKFSSVSWSDDGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-E-----------------EEE--EESEEEEECTTSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-c-----------------ccc--cccceEEEeCCCCEE
Confidence 3446789999997666545444 499999999977642 0 111 112249999999987
Q ss_pred EEEeCCC-----------eEEEEEecCCccceeeeeeecCCCC--eeEEEEecCCCceEEEEEcCC--CcEEEEecCC--
Q 001184 425 GVAFTKH-----------LIHLYTYQGSNDLCQSLEIDAHVGG--VNDLAFSYPNKQLCIVTCGDD--KLIRVWDLSG-- 487 (1130)
Q Consensus 425 as~~~d~-----------~i~vwd~~~~~~~~~~~~~~~h~~~--V~~i~~s~d~~~l~l~s~s~d--~~v~iwd~~~-- 487 (1130)
+....+. .|..|++.++..-. ...+.+.... ...+..++|++.+++.+.+.. ..+.+.|...
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~ 263 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG 263 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC
Confidence 7665333 37777776654321 1234443333 568899999996333333332 3577777332
Q ss_pred ---CeeeEecCCCcCEEEEeecccCCccEEEEE---ecCCcEEEEEccCCcc---eeeecCCCccEEEEEEecCCCeEEE
Q 001184 488 ---RKLFQFEGHEAPVYSVCPHQKENIHFIFST---AVDGKIKAWLYDNVGS---RVDYDAPGLWCTTMLYSADGSRLFS 558 (1130)
Q Consensus 488 ---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~---s~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1130)
.....+......+....-+. + +.+++.. ...+.|...++..... ...+..+...+.-..+...+.+|+.
T Consensus 264 ~~~~~~~~l~~~~~~~~~~v~~~-~-~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl 341 (414)
T PF02897_consen 264 SPDAKPKLLSPREDGVEYYVDHH-G-DRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVL 341 (414)
T ss_dssp TSS-SEEEEEESSSS-EEEEEEE-T-TEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEE
T ss_pred CCcCCcEEEeCCCCceEEEEEcc-C-CEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEE
Confidence 23444443343343322222 2 2333333 2235666667776653 2234444443333334445566665
Q ss_pred eeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEE--Ee--CCCcEEEEeCCCCcee
Q 001184 559 CGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILA--AG--EDNQIKFWDMDNVNML 623 (1130)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~--~dg~i~vwd~~~~~~~ 623 (1130)
... .++...|+++++..+...........+.+..+...++++.+.. .+ .-++++.||+.+++..
T Consensus 342 ~~~-~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 342 SYR-ENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEE-ETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEE-ECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 543 3557789999988455555555444445566655566654333 22 2367888899888754
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00024 Score=80.56 Aligned_cols=182 Identities=13% Similarity=0.160 Sum_probs=126.1
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
..+.++|++++. .+++-|+.+|.|++.+....- . ....|+.. ..+|.++|
T Consensus 38 ~~D~is~~av~~---~~~~~GtH~g~v~~~~~~~~~--~-------------------~~~~~s~~------~~~Gey~a 87 (846)
T KOG2066|consen 38 QNDAISCCAVHD---KFFALGTHRGAVYLTTCQGNP--K-------------------TNFDHSSS------ILEGEYVA 87 (846)
T ss_pred hhhHHHHHHhhc---ceeeeccccceEEEEecCCcc--c-------------------cccccccc------ccCCceEE
Confidence 456788888875 479999999999999986432 1 12234333 66899999
Q ss_pred EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecC-----CCceEEEEEcCCCcEEEEe--cCCCe-eeEecCCC
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP-----NKQLCIVTCGDDKLIRVWD--LSGRK-LFQFEGHE 497 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d-----~~~l~l~s~s~d~~v~iwd--~~~~~-~~~~~~h~ 497 (1130)
+|+.||+|.|-.+-+.+... .+ .-..++.+++++|| .+ .+++||.-| +.++. .-|.. -..+..-.
T Consensus 88 sCS~DGkv~I~sl~~~~~~~---~~-df~rpiksial~Pd~~~~~sk--~fv~GG~ag-lvL~er~wlgnk~~v~l~~~e 160 (846)
T KOG2066|consen 88 SCSDDGKVVIGSLFTDDEIT---QY-DFKRPIKSIALHPDFSRQQSK--QFVSGGMAG-LVLSERNWLGNKDSVVLSEGE 160 (846)
T ss_pred EecCCCcEEEeeccCCccce---eE-ecCCcceeEEeccchhhhhhh--heeecCcce-EEEehhhhhcCccceeeecCc
Confidence 99999999999998876543 12 24567999999998 34 689999888 77776 22322 23466678
Q ss_pred cCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCc------cEEEEEEecCCCeEEEeeecCCCCcEEEE
Q 001184 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL------WCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1130)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~------~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1130)
++|.+++|.. ++++-++ |-.|++||....+.+..+..... ....+.|.++.+.++--+ .+|++
T Consensus 161 G~I~~i~W~g----~lIAWan-d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~------d~v~i 229 (846)
T KOG2066|consen 161 GPIHSIKWRG----NLIAWAN-DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWG------DSVKI 229 (846)
T ss_pred cceEEEEecC----cEEEEec-CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecC------CeEEE
Confidence 9999999843 4666665 45579999988777665544333 234577777766555443 35677
Q ss_pred eeCC
Q 001184 572 WNES 575 (1130)
Q Consensus 572 wd~~ 575 (1130)
..++
T Consensus 230 ~~I~ 233 (846)
T KOG2066|consen 230 CSIK 233 (846)
T ss_pred EEEe
Confidence 6665
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00034 Score=77.40 Aligned_cols=134 Identities=12% Similarity=0.047 Sum_probs=92.9
Q ss_pred CcccccCCcccceeeeccCCCCEEEEEEecCCCeEEEEE----eCcCe----EEEEeCCCCceeecccceeeeccccccc
Q 001184 328 QATWSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVG----CGDGE----ITLWDVGLRERLVSKPFKIWDMSNCSMM 399 (1130)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg----~~dg~----i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 399 (1130)
++.++.....-+++..+.-+....++.||-...+.+.+- +.+|. -.+|++..++..+.
T Consensus 186 l~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrv-------------- 251 (545)
T PF11768_consen 186 LHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRV-------------- 251 (545)
T ss_pred EEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEE--------------
Confidence 344444444445555555666778888887554444432 23443 34666654433221
Q ss_pred eeeeeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCc
Q 001184 400 LQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL 479 (1130)
Q Consensus 400 ~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~ 479 (1130)
.-+--.....|.|++++|+.+.|+.|+.||.|++||...+... +..+.-..+.++|+|+|. ++++|+..|.
T Consensus 252 --svtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qGe 322 (545)
T PF11768_consen 252 --SVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQGE 322 (545)
T ss_pred --EEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCce
Confidence 1122356778999999999999999999999999999776322 223445688999999999 8999999999
Q ss_pred EEEEe
Q 001184 480 IRVWD 484 (1130)
Q Consensus 480 v~iwd 484 (1130)
+.+||
T Consensus 323 lQ~FD 327 (545)
T PF11768_consen 323 LQCFD 327 (545)
T ss_pred EEEEE
Confidence 99999
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00076 Score=75.94 Aligned_cols=228 Identities=11% Similarity=0.135 Sum_probs=123.1
Q ss_pred ccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCC
Q 001184 767 ASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDS 846 (1130)
Q Consensus 767 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~ 846 (1130)
......+.++|+|+.+++ ..+|...++.... ......+.....+|.++++
T Consensus 32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~~-----------------------------~r~k~~G~g~~~vw~~~n~ 81 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTALA-----------------------------WRNKAFGSGLSFVWSSRNR 81 (443)
T ss_dssp SS--SEEEE-TTSSEEEE-EETTEEEEEETTT-----------------------------TEEEEEEE-SEEEE-TSSE
T ss_pred CcCCeeEEECCCCCEEEE-EcCCEEEEEEccC-----------------------------CcccccCceeEEEEecCcc
Confidence 344678999999998888 6667777775110 0001234556788988776
Q ss_pred EEEEEeCCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEc
Q 001184 847 YVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFS 926 (1130)
Q Consensus 847 ~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s 926 (1130)
+.+.-..++|.|+.--..+..+.+... ..+..+- +|.+|...+.+ .|.+||..+++.+.++... +|..+.|+
T Consensus 82 yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If----~G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws 153 (443)
T PF04053_consen 82 YAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIF----GGNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWS 153 (443)
T ss_dssp EEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-
T ss_pred EEEEECCCeEEEEEcCccccceEEcCC-cccceEE----cCcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEE
Confidence 555555788999743333332333322 1233333 26677766555 7999999999999998743 38999999
Q ss_pred cCCCeEEEEeCCCcEEEEECCCCc-------ccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceee
Q 001184 927 TNLNILVSSGSDAQLIFWNTDTWE-------KRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECI 999 (1130)
Q Consensus 927 ~dg~~L~s~s~Dg~i~vwd~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~ 999 (1130)
++|.+++..+.+ .+.+++.+... .......... .....|.+.+|..| .++.+... +++-+--.....+
T Consensus 154 ~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~--E~~~~IkSg~W~~d-~fiYtT~~-~lkYl~~Ge~~~i 228 (443)
T PF04053_consen 154 DDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIH--EISERIKSGCWVED-CFIYTTSN-HLKYLVNGETGII 228 (443)
T ss_dssp TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEE--EE-S--SEEEEETT-EEEEE-TT-EEEEEETTEEEEE
T ss_pred CCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEE--EecceeEEEEEEcC-EEEEEcCC-eEEEEEcCCcceE
Confidence 999999999866 57777765430 0000000110 00267888999888 45545444 7766433333333
Q ss_pred eeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCccc
Q 001184 1000 RQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRL 1043 (1130)
Q Consensus 1000 ~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~ 1043 (1130)
..+ ..++.-+.+.+..+.++....|+.|..+.+.....
T Consensus 229 ~~l------d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~~ 266 (443)
T PF04053_consen 229 AHL------DKPLYLLGYLPKENRLYLIDRDGNVISYELDLSEL 266 (443)
T ss_dssp EE-------SS--EEEEEETTTTEEEEE-TT--EEEEE--HHHH
T ss_pred EEc------CCceEEEEEEccCCEEEEEECCCCEEEEEECHHHH
Confidence 333 45788888999888899999999999998875543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0036 Score=69.58 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=80.2
Q ss_pred CCceeEEEEecC-CCEEEEE----e-CCe----EEEEECCCceeEEE--E-eCCCCCeEEEEEeCCCCcEEEEEeCCCcE
Q 001184 833 EDVVPCVALSKN-DSYVMSA----G-GGK----VSLFNMMNFKVMTT--F-MSPPPASTFLAFHPQDNNIIAIGMEDSTI 899 (1130)
Q Consensus 833 ~~~i~~l~~s~d-g~~la~~----~-dg~----i~iwd~~~~~~~~~--~-~~~~~~i~~l~~sp~~~~~lasg~~dg~v 899 (1130)
+....++.||.. ...+.+. + +|. ..+|++...+..+. . -.....+.+++++| +...|+.|+.||+|
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSI 283 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence 334466777753 3333332 1 333 45677765543222 1 13567899999999 88889999999999
Q ss_pred EEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCC
Q 001184 900 QIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTW 949 (1130)
Q Consensus 900 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~ 949 (1130)
.+||...+... +..+.-..+.++|+|+|..+++|+..|.+.+||+.-+
T Consensus 284 iLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 284 ILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 99998766332 3334556788999999999999999999999998764
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0018 Score=72.96 Aligned_cols=225 Identities=11% Similarity=0.071 Sum_probs=120.2
Q ss_pred ecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001184 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1130)
Q Consensus 405 ~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd 484 (1130)
+.........+.++|+|+++++++ ||.-.|+.... .+. ...+.-...+|.+.++ +|+-...++|.|+.
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~---~r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALA---WRN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYK 95 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTT---TEE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEE
T ss_pred CCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccC---Ccc-----cccCceeEEEEecCcc---EEEEECCCeEEEEE
Confidence 444555688999999999999954 67777777332 221 1234456789998665 56666688999976
Q ss_pred -cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecC
Q 001184 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1130)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1130)
.+......+... ..+..+.. |.+|...+ ++.|.+||+++...+..+... +|..+.|+++|++++..+
T Consensus 96 n~~~~~~k~i~~~-~~~~~If~-----G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t--- 163 (443)
T PF04053_consen 96 NFKNEVVKSIKLP-FSVEKIFG-----GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT--- 163 (443)
T ss_dssp TTEE-TT-----S-S-EEEEE------SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE----
T ss_pred cCccccceEEcCC-cccceEEc-----CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe---
Confidence 555444444321 23444422 45555554 448999999998888877654 389999999999999987
Q ss_pred CCCcEEEEeeCCCC-----------ceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCC
Q 001184 564 EGDSHLVEWNESEG-----------ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGL 632 (1130)
Q Consensus 564 ~~~~~i~~wd~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 632 (1130)
+..+++++.... .....+... ...|.+.+|..+ .++-.+.. +|+. +-+|+.-.......
T Consensus 164 --~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~-~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~-- 233 (443)
T PF04053_consen 164 --KDSIYILKYNLEAVAAIPEEGVEDAFELIHEI-SERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDK-- 233 (443)
T ss_dssp --S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE--S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--
T ss_pred --CCeEEEEEecchhcccccccCchhceEEEEEe-cceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCC--
Confidence 556777664322 022222211 225667777655 33333333 6665 33444322222221
Q ss_pred CCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 633 PSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 633 ~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
++.-+.+.+..+.+.....++.+..+.+...
T Consensus 234 -~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 234 -PLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp ---EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred -ceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 5677778887788999999999999887654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0061 Score=67.88 Aligned_cols=251 Identities=16% Similarity=0.223 Sum_probs=133.2
Q ss_pred CEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceee------c------------ccceeeeccccc------cceeeee
Q 001184 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLV------S------------KPFKIWDMSNCS------MMLQAAI 404 (1130)
Q Consensus 349 ~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~------~------------~~~~~~~~~~~~------~~~~~~~ 404 (1130)
.|+++.|+++... |++|...|.|.||.+...+... . .+-++.|+.... ...+...
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 6899999999775 8999999999999886543321 0 011233333211 1234445
Q ss_pred ecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeec------CCCCeeEEEEec-----CC-CceEEE
Q 001184 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDA------HVGGVNDLAFSY-----PN-KQLCIV 472 (1130)
Q Consensus 405 ~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~------h~~~V~~i~~s~-----d~-~~l~l~ 472 (1130)
+....+.|++++.| |=-++|.|..+|.+.|.|+++...+.. ..+.. ....|+++.|+- |+ ..++++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 66778999999998 555999999999999999977654432 22222 334688888872 22 124788
Q ss_pred EEcCCCcEEEEe-c-C--CCeeeEe----cCCCcCEEEEeecccCCc-------------------cEEEEEecCCcEEE
Q 001184 473 TCGDDKLIRVWD-L-S--GRKLFQF----EGHEAPVYSVCPHQKENI-------------------HFIFSTAVDGKIKA 525 (1130)
Q Consensus 473 s~s~d~~v~iwd-~-~--~~~~~~~----~~h~~~v~~~~~~~~~~~-------------------~~l~s~s~dg~i~v 525 (1130)
.|...|.+.+|. . . +.....+ ..+.++|..+..-...++ +-++....+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 888899999997 2 1 3222222 246677766653211111 22444555788999
Q ss_pred EEccCCcceeeecCCCccEEEEEEe-----cCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccC---ceeEEEEEc
Q 001184 526 WLYDNVGSRVDYDAPGLWCTTMLYS-----ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRK---KSAGVVQFD 597 (1130)
Q Consensus 526 wd~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~---~~v~~~~~~ 597 (1130)
+...+.+...........+..+.+- ..+..|++... +|.++++.+..-+.+..+.-... ..+...+++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~----~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN----NGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET----TSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEEC----CCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9887766655444332344455553 24455555543 89999999998887776664321 122335566
Q ss_pred CCCCEEEEE
Q 001184 598 TTRNRILAA 606 (1130)
Q Consensus 598 ~~~~~l~~~ 606 (1130)
++|..++-.
T Consensus 316 ~~Gdi~~~~ 324 (395)
T PF08596_consen 316 RNGDIFYWT 324 (395)
T ss_dssp TTS-EEEE-
T ss_pred CCCCEEEEe
Confidence 666644444
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >smart00667 LisH Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.1e-05 Score=53.07 Aligned_cols=32 Identities=34% Similarity=0.513 Sum_probs=29.6
Q ss_pred chHHHHHHHHHhhhhccHHHHHHHHHHhcCCC
Q 001184 4 LSRELVFLILQFLDEEKFKESVHRLEQESGFF 35 (1130)
Q Consensus 4 ~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~ 35 (1130)
.++++.++|+|||...||.+|+.+|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999974
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0064 Score=68.81 Aligned_cols=199 Identities=15% Similarity=0.134 Sum_probs=106.5
Q ss_pred EEEecCCCEEEEEeCC------------eEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeec
Q 001184 839 VALSKNDSYVMSAGGG------------KVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV 906 (1130)
Q Consensus 839 l~~s~dg~~la~~~dg------------~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 906 (1130)
++.+|.|..+|...|. .|+||+... +.+..+.-..+.+.++.|+. +..++ +-..||.+++||+..
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG-~ll~~i~w~~~~iv~~~wt~-~e~Lv-vV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSG-KLLSSIPWDSGRIVGMGWTD-DEELV-VVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCC-CEeEEEEECCCCEEEEEECC-CCeEE-EEEcCCEEEEEeCCC
Confidence 4556666666655443 599999865 45555554448999999997 55544 566899999999863
Q ss_pred Ce------EEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCC----CCCeEE-EEEcC
Q 001184 907 DE------VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKL----PVGETR-VQFHS 975 (1130)
Q Consensus 907 ~~------~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~----~~~v~~-~~~s~ 975 (1130)
.. .+....-....+....+..+| ++.-..++.+.+-+-.............+.... ...... ..++.
T Consensus 111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~ 188 (410)
T PF04841_consen 111 EFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS 188 (410)
T ss_pred ceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeec
Confidence 33 111111122223333444455 333334444443322221100000001111100 011111 23444
Q ss_pred CCcEEEE-EcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCC
Q 001184 976 DQVRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAP 1049 (1130)
Q Consensus 976 d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1049 (1130)
+....+. ..++.+.+.+....+. +.. .+++..|++||+|++||.-..+|.+.|....-.+..+.+..
T Consensus 189 ~~~~~i~~~~g~~i~~i~~~~~~~---i~~----~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~ 256 (410)
T PF04841_consen 189 DRVVEILLANGETIYIIDENSFKQ---IDS----DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT 256 (410)
T ss_pred CcceEEEEecCCEEEEEEcccccc---ccC----CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec
Confidence 4443333 4445555444322211 111 36899999999999999999999999998776666666653
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0061 Score=62.72 Aligned_cols=191 Identities=12% Similarity=0.159 Sum_probs=109.1
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
-...+..++|.|+.+.|+++....+.|...+.+ |+.++..+ +.+ .+..-.|++..++.+++
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~vl 80 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP-----------------LDG-FGDYEGITYLGNGRYVL 80 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE------------------SS--SSEEEEEE-STTEEEE
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe-----------------CCC-CCCceeEEEECCCEEEE
Confidence 345699999999988888888888999989874 77765322 223 34677899988888887
Q ss_pred EEeCCCeEEEEEecCCcc-c--ee--eeee--e-cCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecC----CCeeeE-
Q 001184 426 VAFTKHLIHLYTYQGSND-L--CQ--SLEI--D-AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS----GRKLFQ- 492 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~-~--~~--~~~~--~-~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~----~~~~~~- 492 (1130)
+--.++.+.++++..... + .. ...+ . .++..+-.++|.+.++. |+.+-+..-..|+... +..+..
T Consensus 81 ~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~~ 158 (248)
T PF06977_consen 81 SEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFVS 158 (248)
T ss_dssp EETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred EEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceeec
Confidence 776789999999844321 1 11 1111 1 35567999999999884 4455556666666622 222211
Q ss_pred -------ecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCC---------ccEEEEEEecCCCeE
Q 001184 493 -------FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG---------LWCTTMLYSADGSRL 556 (1130)
Q Consensus 493 -------~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l 556 (1130)
.......+.++.++|. .+++++.......|..+|. .++....+.... .....|+|.++|++.
T Consensus 159 ~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY 236 (248)
T PF06977_consen 159 DDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY 236 (248)
T ss_dssp E-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred cccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence 1124456788888875 4567777778888888884 344333322222 257899999999766
Q ss_pred EEe
Q 001184 557 FSC 559 (1130)
Q Consensus 557 ~~~ 559 (1130)
++.
T Consensus 237 Ivs 239 (248)
T PF06977_consen 237 IVS 239 (248)
T ss_dssp EEE
T ss_pred EEc
Confidence 664
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00059 Score=76.49 Aligned_cols=150 Identities=11% Similarity=0.125 Sum_probs=101.1
Q ss_pred eEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEE-EecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCccccee
Q 001184 877 STFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK-LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSI 955 (1130)
Q Consensus 877 i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~-l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~ 955 (1130)
+.--+++. .+.+++.|+.-|.+++|+-..++.... ..+-.+.+.....|++..++|.|+..|.|.++-+.........
T Consensus 36 v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~ 114 (726)
T KOG3621|consen 36 VKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD 114 (726)
T ss_pred EEEEEeec-CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence 33334455 678999999999999999888765433 3344566777788999999999999999999998885544444
Q ss_pred eEeccCCCCCCCeEEEEEcCCCcEEEEEc-CCcEEEEECCCc-eeeeeeecCCCCCCCeEEEEECCCCCEEEEEe
Q 001184 956 AIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKM-ECIRQWVPQDVLSSPISSAAYSCNSQLIYATF 1028 (1130)
Q Consensus 956 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~-~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~ 1028 (1130)
........++..|++++|++++..+.+|+ .|.|..-.+..- ........-....++|..+.+. ++.+|++..
T Consensus 115 ~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl 188 (726)
T KOG3621|consen 115 YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTL 188 (726)
T ss_pred eeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhh
Confidence 44433344568999999999999999975 567777666651 1110000011125677777765 344444444
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.75 E-value=1.2e-05 Score=88.16 Aligned_cols=205 Identities=14% Similarity=0.185 Sum_probs=132.7
Q ss_pred CCCCEEEEEEecCCC-eEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC-CCCE
Q 001184 346 QGSSVVSMDFHPFHH-TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNF 423 (1130)
Q Consensus 346 h~~~V~~v~fspdg~-~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~ 423 (1130)
....+.|++++-+.+ -++++|..+|.|-+-.+....-- ...+..+|....++++|++ |...
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~ 117 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNH 117 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHH
Confidence 445777887665543 58999999999999887543211 1124668888999999999 7778
Q ss_pred EEEEe----CCCeEEEEEecCCc--cceeeeeeec-CCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCC
Q 001184 424 IGVAF----TKHLIHLYTYQGSN--DLCQSLEIDA-HVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGH 496 (1130)
Q Consensus 424 las~~----~d~~i~vwd~~~~~--~~~~~~~~~~-h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h 496 (1130)
||.|- .|..+.|||+.++- .... ..+.+ -.....+++|..+.+ ++.+|...+.++++|....+...-.-.
T Consensus 118 LAagldkhrnds~~~Iwdi~s~ltvPke~-~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~svn 194 (783)
T KOG1008|consen 118 LAAGLDKHRNDSSLKIWDINSLLTVPKES-PLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSVN 194 (783)
T ss_pred HHhhhhhhcccCCccceecccccCCCccc-cccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhhh
Confidence 88873 35679999998862 1111 11222 334567899998888 789999999999999544333332223
Q ss_pred CcCEEEEeecccCCccEEEEEecCCcEEEEE-ccCCcceeeecCCC-----ccEEEEEEecCCC-eEEEeeecCCCCcEE
Q 001184 497 EAPVYSVCPHQKENIHFIFSTAVDGKIKAWL-YDNVGSRVDYDAPG-----LWCTTMLYSADGS-RLFSCGTSKEGDSHL 569 (1130)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd-~~~~~~~~~~~~~~-----~~v~~~~~s~~~~-~l~~~~~~~~~~~~i 569 (1130)
+..+..+.+.|- .++++++-. ||.|.+|| ..+.+..+....+. ..+..++|+|... .+++... ..++|
T Consensus 195 Tk~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~tI 269 (783)
T KOG1008|consen 195 TKYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSITI 269 (783)
T ss_pred hhhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---CcceE
Confidence 344555555541 224665554 99999999 44444333221121 2488999999654 3444443 37889
Q ss_pred EEeeCC
Q 001184 570 VEWNES 575 (1130)
Q Consensus 570 ~~wd~~ 575 (1130)
+++|+.
T Consensus 270 rlydi~ 275 (783)
T KOG1008|consen 270 RLYDIC 275 (783)
T ss_pred EEeccc
Confidence 999874
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.014 Score=65.97 Aligned_cols=186 Identities=9% Similarity=0.110 Sum_probs=101.5
Q ss_pred CceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEe-------CCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeec
Q 001184 834 DVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFM-------SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV 906 (1130)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 906 (1130)
+.+.++.|+.+..+++...||.+++||+.... ...+. .....+.+..+.. +|-.+ -..++.+++.+--.
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~-~Givv--Lt~~~~~~~v~n~~ 156 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYK-NGIVV--LTGNNRFYVVNNID 156 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCC-CCEEE--ECCCCeEEEEeCcc
Confidence 78999999999999998889999999987443 11111 1112222223333 44333 33445554432222
Q ss_pred Ce-EEEEE---ec-----CCC-CeeE-EEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcC
Q 001184 907 DE-VKTKL---KG-----HQK-HITG-LAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHS 975 (1130)
Q Consensus 907 ~~-~~~~l---~~-----h~~-~V~~-l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 975 (1130)
.. ....+ .. |.- .+.. ..++.+....+....++.+.+-+-...+. . ....++..+++||
T Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~-------i---~~~~~i~~iavSp 226 (410)
T PF04841_consen 157 EPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ-------I---DSDGPIIKIAVSP 226 (410)
T ss_pred ccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc-------c---cCCCCeEEEEECC
Confidence 11 11111 11 000 1111 23444555555555555555333322110 1 1125799999999
Q ss_pred CCcEEEE-EcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEe
Q 001184 976 DQVRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFD 1037 (1130)
Q Consensus 976 d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd 1037 (1130)
+|+++|. ..++.+.+...+-.+.+..+.... ......|.|..+...++.- ...|.+..
T Consensus 227 ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~--~~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 227 NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDS--KSPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred CCCEEEEEECCCCEEEEECcccceeEEeecCc--CCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 9999998 677899998877666666655442 3466778887665433333 33444444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.084 Score=61.94 Aligned_cols=61 Identities=11% Similarity=0.130 Sum_probs=43.6
Q ss_pred CeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecC
Q 001184 854 GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGH 916 (1130)
Q Consensus 854 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h 916 (1130)
|.|.-+|+.+++..-..+............ .+.+++.++.+|.++.+|.++|+.+-..+-.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 568889999998887766433222222222 3447777888999999999999999887654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0023 Score=71.97 Aligned_cols=196 Identities=15% Similarity=0.114 Sum_probs=116.2
Q ss_pred cceeeecc-CCCCEEEEEEecCCCeEEEEEeCc---CeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEE
Q 001184 338 RAVACTMH-QGSSVVSMDFHPFHHTLLVVGCGD---GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVS 413 (1130)
Q Consensus 338 ~~~~~~~~-h~~~V~~v~fspdg~~llasg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 413 (1130)
+...+.+. -...+..-+|+|+++.+....-.. ..+.++|+++++...... -.+.-.
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--------------------~~g~~~ 241 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--------------------FNGNNG 241 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--------------------cCCccC
Confidence 44444444 456788889999999744443222 359999999887654211 222334
Q ss_pred EEEEcCCCCEEEEEe-CCC--eEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE--ecCCC
Q 001184 414 RVAWSPDGNFIGVAF-TKH--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW--DLSGR 488 (1130)
Q Consensus 414 ~v~~spdg~~las~~-~d~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw--d~~~~ 488 (1130)
.-+|||||++||.+. .|| .|.+.|+.++...+ +..-.+.-..-.|+|||+. ++++.+..|.-.|| |..|.
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~ 316 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGS 316 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCC
Confidence 578999999888764 445 46677777765222 3333333347789999997 45555566654444 56666
Q ss_pred eeeEecCCCcCEEEEeecccCCccEEEEEecC-Cc--EEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeee
Q 001184 489 KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD-GK--IKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGT 561 (1130)
Q Consensus 489 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-g~--i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1130)
....+....+.-..-. .++||.+++..+.. |. |.+.|+.+... ............-.+.++|+.+...+.
T Consensus 317 ~~~riT~~~~~~~~p~--~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 317 QVTRLTFSGGGNSNPV--WSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred ceeEeeccCCCCcCcc--CCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEecc
Confidence 6555543333222333 35677777776643 44 55555555443 222222333445667888888877653
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.019 Score=63.93 Aligned_cols=240 Identities=12% Similarity=0.147 Sum_probs=134.4
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccc----------------------------------------eeeeee
Q 001184 411 SVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDL----------------------------------------CQSLEI 450 (1130)
Q Consensus 411 ~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~----------------------------------------~~~~~~ 450 (1130)
.|+.+.|+++..-||+|...|.|.||.....+.. .+..-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5889999999999999999999999877432111 111123
Q ss_pred ecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCee-eE--ecC------CCcCEEEEeec---ccCCc---cEEE
Q 001184 451 DAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKL-FQ--FEG------HEAPVYSVCPH---QKENI---HFIF 515 (1130)
Q Consensus 451 ~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~-~~--~~~------h~~~v~~~~~~---~~~~~---~~l~ 515 (1130)
+...++|++++.|.-| +++.|..+|.+.|.|..|..+ +. +.. ....|+++.|. ...|+ -.++
T Consensus 83 ~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp ---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 3446889999998666 799999999999999766544 22 122 23457777765 22333 5788
Q ss_pred EEecCCcEEEEEccC-Cccee------eecCCCccEEEEE-EecC---------------------CCeEEEeeecCCCC
Q 001184 516 STAVDGKIKAWLYDN-VGSRV------DYDAPGLWCTTML-YSAD---------------------GSRLFSCGTSKEGD 566 (1130)
Q Consensus 516 s~s~dg~i~vwd~~~-~~~~~------~~~~~~~~v~~~~-~s~~---------------------~~~l~~~~~~~~~~ 566 (1130)
.|...|.+.+|.+.- ....+ ....+..++..+. ++.+ ..++++++ +
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-----e 234 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-----E 234 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE------S
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-----c
Confidence 999999999998752 22211 1113334444444 3222 12445554 6
Q ss_pred cEEEEeeCCCCceeEEEecccCceeEEEEEc-----CCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCC--CCCcceEE
Q 001184 567 SHLVEWNESEGALKRTYIGFRKKSAGVVQFD-----TTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGG--LPSLPRLR 639 (1130)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~i~~v~ 639 (1130)
..++++...+.+....... .......+++- ..+..|++-..+|.+++|.+..-+.+........ ...+....
T Consensus 235 ~~irv~~~~~~k~~~K~~~-~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFD-DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp SEEEEE-TT---EEEEE-S-S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred cceEEEeCCCCcccceeec-cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 7899999887776555442 11123334442 2455788888999999999999998888776431 11355677
Q ss_pred EcCCCCEEEEEeCCCcEEEEE
Q 001184 640 FNKEGNLLVVTTADQGIKILA 660 (1130)
Q Consensus 640 ~s~~~~~l~~~~~dg~i~iw~ 660 (1130)
++++|..++..+.. .+.++.
T Consensus 314 is~~Gdi~~~~gps-E~~l~s 333 (395)
T PF08596_consen 314 ISRNGDIFYWTGPS-EIQLFS 333 (395)
T ss_dssp E-TTS-EEEE-SSS-EEEEEE
T ss_pred ECCCCCEEEEeCcc-cEEEEE
Confidence 88888877666443 344443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.094 Score=61.53 Aligned_cols=148 Identities=9% Similarity=0.086 Sum_probs=88.4
Q ss_pred cEEEEEeecCeEEEEEecCCCCeeE---------EEEccCCC---eEEEEeCCCcEEEEECCCCcccceeeE--------
Q 001184 898 TIQIYNVRVDEVKTKLKGHQKHITG---------LAFSTNLN---ILVSSGSDAQLIFWNTDTWEKRKSIAI-------- 957 (1130)
Q Consensus 898 ~v~iwd~~~~~~~~~l~~h~~~V~~---------l~~s~dg~---~L~s~s~Dg~i~vwd~~~~~~~~~~~~-------- 957 (1130)
+|.-.|++||+..-.++.....++. +....+|+ .++.+..+|.+.+.|..+++.......
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~ 351 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT 351 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence 5667788899988776643222222 22224666 788999999999999999876321000
Q ss_pred ec--cCC---------------CC-----C-----CCeEEEEEcCCCcEEEEE-c-------------------------
Q 001184 958 QL--PAG---------------KL-----P-----VGETRVQFHSDQVRLLVN-H------------------------- 984 (1130)
Q Consensus 958 ~~--~~~---------------~~-----~-----~~v~~~~~s~d~~~l~~~-~------------------------- 984 (1130)
.. ..+ .. + ..-...+++|+..++++. .
T Consensus 352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~ 431 (527)
T TIGR03075 352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT 431 (527)
T ss_pred ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence 00 000 00 0 001125666666655541 1
Q ss_pred --------CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCC
Q 001184 985 --------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAP 1049 (1130)
Q Consensus 985 --------d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1049 (1130)
-+.+.-+|+.+|+..-....... ...+. +.-.|.+++.++.||.++.+|.++|+.+.+++.
T Consensus 432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p---~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 432 IKPPPDDHMGSLIAWDPITGKIVWEHKEDFP---LWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred cCCCCCCCceeEEEEeCCCCceeeEecCCCC---CCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 13477788888887766543311 11111 222556777788899999999999999988764
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.016 Score=65.30 Aligned_cols=211 Identities=14% Similarity=0.142 Sum_probs=148.5
Q ss_pred CceeEEEEecCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeC---CCcEEEEEeecCe
Q 001184 834 DVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGME---DSTIQIYNVRVDE 908 (1130)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~---dg~v~iwd~~~~~ 908 (1130)
..-..+++++++..+.... ++.|.+.|..+.+......... ....++++| ++..+.++.. ++++.+.|..+.+
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCe
Confidence 3345788889988666555 6889999988877777665322 677899999 5555555544 6889999999998
Q ss_pred EEEEEecCCCCeeEEEEccCCCeEEEEe-CCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEc---
Q 001184 909 VKTKLKGHQKHITGLAFSTNLNILVSSG-SDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--- 984 (1130)
Q Consensus 909 ~~~~l~~h~~~V~~l~~s~dg~~L~s~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--- 984 (1130)
.+.....-..+ ..++++|+|+.+..+. .++.|.+.|........ . ..............+.++++|.++.+..
T Consensus 152 ~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~-~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 152 VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-G-SVGSLVGVGTGPAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-c-ccccccccCCCCceEEECCCCCEEEEEeccC
Confidence 88886544445 8999999999766655 78899999977644321 0 0000011124557899999999887732
Q ss_pred -CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeC-CCcEEEEeCCCcccccccCCCc
Q 001184 985 -ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFT-DGSIGVFDADSLRLRCRIAPSA 1051 (1130)
Q Consensus 985 -d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~-Dg~i~vwd~~~~~~~~~~~~~~ 1051 (1130)
++.+...|..++.....-..... . ....+.++|+|+.+.+... .+.+.+-|..+......+....
T Consensus 229 ~~~~v~~id~~~~~v~~~~~~~~~-~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~ 295 (381)
T COG3391 229 GSNNVLKIDTATGNVTATDLPVGS-G-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGN 295 (381)
T ss_pred CCceEEEEeCCCceEEEecccccc-C-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccc
Confidence 25888999998887766322211 2 4567899999999988854 4889999999888776655433
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.025 Score=58.31 Aligned_cols=202 Identities=11% Similarity=0.095 Sum_probs=113.7
Q ss_pred CCCCceeEEEEecCCCEEEEEe--CCeEEEEECCCceeEEEEeCC-CCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecC
Q 001184 831 NAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSP-PPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD 907 (1130)
Q Consensus 831 ~~~~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 907 (1130)
+-...+..++++|+.+.|++.. .+.|..++. +|+.++.+... .+..-.+++.. ++.++++.-.++.+.++++...
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~ 96 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDD 96 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE---
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEecc
Confidence 3455699999999877665555 577888887 47888887643 35678889987 7777776666899999998432
Q ss_pred ------eEEEEEe-----cCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCC---CcccceeeE-ecc-CCCCCCCeEEE
Q 001184 908 ------EVKTKLK-----GHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDT---WEKRKSIAI-QLP-AGKLPVGETRV 971 (1130)
Q Consensus 908 ------~~~~~l~-----~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~---~~~~~~~~~-~~~-~~~~~~~v~~~ 971 (1130)
.....+. .+...+-.|+|.+.++.|+.+-...-..++.+.. ......... ... ....-..+..+
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l 176 (248)
T PF06977_consen 97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGL 176 (248)
T ss_dssp -TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EE
T ss_pred ccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccce
Confidence 1112221 2445689999999988888887777777777664 111111110 011 11112457889
Q ss_pred EEcCCCcEEEE-E-cCCcEEEEECCCceeeeeeecCCCC------CCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 001184 972 QFHSDQVRLLV-N-HETQLAIYDGSKMECIRQWVPQDVL------SSPISSAAYSCNSQLIYATFTDGSIGVF 1036 (1130)
Q Consensus 972 ~~s~d~~~l~~-~-~d~~i~v~d~~~~~~~~~~~~~~~~------~~~v~~v~~s~dg~~l~t~~~Dg~i~vw 1036 (1130)
.++|....|.+ + .+..+.++| .+|+.+..+.-..+. -..--.|+|.++|.+.+ .++-+..+++
T Consensus 177 ~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 177 SYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp EEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred EEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence 99987654444 5 467788888 667776655443211 12467899999996544 4566666655
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0067 Score=72.11 Aligned_cols=149 Identities=15% Similarity=0.122 Sum_probs=102.2
Q ss_pred CCcEEEEE-eCCCcEEEEEeecCeEEEEEecCCCC-eeEEEEcc-----CCCeEEEEeCCCcEEEEECCCCcccceeeEe
Q 001184 886 DNNIIAIG-MEDSTIQIYNVRVDEVKTKLKGHQKH-ITGLAFST-----NLNILVSSGSDAQLIFWNTDTWEKRKSIAIQ 958 (1130)
Q Consensus 886 ~~~~lasg-~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~-----dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~ 958 (1130)
+..+|+.. .....|+-.|++.|+.+..+..|... |..++-.. +...-+.|-.+..+..||..-... .....+
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-k~v~~~ 570 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-KLVDSQ 570 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC-ceeecc
Confidence 44454443 45678999999999999999988754 55443321 123445566677899999876331 111111
Q ss_pred ccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeC
Q 001184 959 LPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDA 1038 (1130)
Q Consensus 959 ~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~ 1038 (1130)
..........++++-+.+|.+++.+.+|.||+||-- |..-++..+ +.+.+|.+|+.+.||++|++.+ +..+.+++.
T Consensus 571 ~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~AKT~lp--~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 571 SKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GKRAKTALP--GLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ccccccCCCceEEEecCCceEEEEeCCCcEEeeccc-chhhhhcCC--CCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 222233467899999999998888999999999954 333333322 2278999999999999999888 678888875
Q ss_pred C
Q 001184 1039 D 1039 (1130)
Q Consensus 1039 ~ 1039 (1130)
.
T Consensus 647 ~ 647 (794)
T PF08553_consen 647 L 647 (794)
T ss_pred e
Confidence 3
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0074 Score=67.94 Aligned_cols=191 Identities=16% Similarity=0.141 Sum_probs=113.8
Q ss_pred cCCCccEEEEEEcCCCCEEEEEe---CC-CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001184 406 KDSSISVSRVAWSPDGNFIGVAF---TK-HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR 481 (1130)
Q Consensus 406 ~~h~~~V~~v~~spdg~~las~~---~d-~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~ 481 (1130)
..-...+..-+|+|+++.++..+ .. ..+.++|+.+++.... ..+.++ -...+|+|||+. ++++...|+...
T Consensus 189 ~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i-~~~~g~---~~~P~fspDG~~-l~f~~~rdg~~~ 263 (425)
T COG0823 189 TDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI-LNFNGN---NGAPAFSPDGSK-LAFSSSRDGSPD 263 (425)
T ss_pred cccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee-eccCCc---cCCccCCCCCCE-EEEEECCCCCcc
Confidence 34455677889999999877653 22 4699999999875432 233444 456799999997 566777777655
Q ss_pred E--EecCCCeeeEecCCCcCEEEEeecccCCccEEEEE-ecCCcEEEE--EccCCcceeeecCCCccEEEEEEecCCCeE
Q 001184 482 V--WDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFST-AVDGKIKAW--LYDNVGSRVDYDAPGLWCTTMLYSADGSRL 556 (1130)
Q Consensus 482 i--wd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-s~dg~i~vw--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1130)
| .|..++.+..+..-.+.-..-.| +++|+.++-. +..|.-.|| +.+..... .+......-..-.++|||+++
T Consensus 264 iy~~dl~~~~~~~Lt~~~gi~~~Ps~--spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~~~~~~~p~~SpdG~~i 340 (425)
T COG0823 264 IYLMDLDGKNLPRLTNGFGINTSPSW--SPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFSGGGNSNPVWSPDGDKI 340 (425)
T ss_pred EEEEcCCCCcceecccCCccccCccC--CCCCCEEEEEeCCCCCcceEEECCCCCcee-EeeccCCCCcCccCCCCCCEE
Confidence 5 55666666555533332223334 4566666655 445554555 55444432 222222222377899999999
Q ss_pred EEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEe
Q 001184 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG 607 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 607 (1130)
+..+.. .+.-.|.+.|+.++..++.+.... ....-.+.+++..++..+
T Consensus 341 ~~~~~~-~g~~~i~~~~~~~~~~~~~lt~~~--~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 341 VFESSS-GGQWDIDKNDLASGGKIRILTSTY--LNESPSWAPNGRMIMFSS 388 (425)
T ss_pred EEEecc-CCceeeEEeccCCCCcEEEccccc--cCCCCCcCCCCceEEEec
Confidence 998742 223457777777666444443211 233355777777666544
|
|
| >KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00076 Score=70.85 Aligned_cols=111 Identities=10% Similarity=0.112 Sum_probs=88.8
Q ss_pred HHHHHHHHHhhhhccHHHHHHHHHHhcCCCcc----------HHHHHHHHhccCHHHHHHHhccCCCcCCCccchhhhHH
Q 001184 6 RELVFLILQFLDEEKFKESVHRLEQESGFFFN----------MKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFE 75 (1130)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~----------~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~ 75 (1130)
+.+..+|..++...|..+.+..|-+|||...+ +.++-++|..|+-.-|++.+.......... ...+.|.
T Consensus 117 ~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~-~s~LE~~ 195 (394)
T KOG2817|consen 117 QVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK-SSSLEFK 195 (394)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc-cccHHHH
Confidence 33689999999999999999999999998752 678999999999999999987652111111 2248999
Q ss_pred HHHhHHHHHHhcCCHH--HHHHHHHhhcccccccCHHHHHHHHH
Q 001184 76 IRKQKYLEALDRHDRA--KAVEILVKDLKVFSTFNEELFKEITQ 117 (1130)
Q Consensus 76 i~~~~~lell~~~~~~--~a~~~l~~~~~~~~~~~~~~~~~l~~ 117 (1130)
+..+.|++++..|... +|+...|+.++|+.......++.|-.
T Consensus 196 Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~ 239 (394)
T KOG2817|consen 196 LHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMG 239 (394)
T ss_pred HHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHH
Confidence 9999999999999888 99999999999996544444444433
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.14 Score=57.79 Aligned_cols=258 Identities=12% Similarity=0.136 Sum_probs=161.7
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCE
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 423 (1130)
+.-......+++.|+|..+.++-.....+.+-+........ ....-...-..++.++++..
T Consensus 27 ~~~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~-------------------~~~~g~~~p~~i~v~~~~~~ 87 (381)
T COG3391 27 ISLGRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQ-------------------SLSVGGVYPAGVAVNPAGNK 87 (381)
T ss_pred eecCCCCceeEEcCccCEEEEEeecCceeeecccccceeee-------------------eccCCCccccceeeCCCCCe
Confidence 33333677888899996555554333344444443111110 01111134567899999885
Q ss_pred EE-EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEc-CCCcEEEEe-cCCCeeeEecCCCcCE
Q 001184 424 IG-VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG-DDKLIRVWD-LSGRKLFQFEGHEAPV 500 (1130)
Q Consensus 424 la-s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s-~d~~v~iwd-~~~~~~~~~~~h~~~v 500 (1130)
+. ....+..|.+.|..+.+..... ..+. ....++++++++.++++-.. .++++.+.| .+++.+.....-..+
T Consensus 88 vyv~~~~~~~v~vid~~~~~~~~~~--~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P- 162 (381)
T COG3391 88 VYVTTGDSNTVSVIDTATNTVLGSI--PVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP- 162 (381)
T ss_pred EEEecCCCCeEEEEcCcccceeeEe--eecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-
Confidence 54 4445688999997776544321 1222 57789999999864333333 479999999 778777775433334
Q ss_pred EEEeecccCCccEEE-EEecCCcEEEEEccCCccee-e---ecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC
Q 001184 501 YSVCPHQKENIHFIF-STAVDGKIKAWLYDNVGSRV-D---YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1130)
Q Consensus 501 ~~~~~~~~~~~~~l~-s~s~dg~i~vwd~~~~~~~~-~---~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1130)
..+++.+ ++..++ +-..+++|.+.|........ . ..........+.++|+|.++.+.-. .+.++.+...|..
T Consensus 163 ~~~a~~p--~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~-~~~~~~v~~id~~ 239 (381)
T COG3391 163 TGVAVDP--DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVAND-GSGSNNVLKIDTA 239 (381)
T ss_pred ceEEECC--CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEec-cCCCceEEEEeCC
Confidence 6777754 445444 44578999999966543332 0 1122234567899999998777653 1223689999998
Q ss_pred CCceeEE-EecccCceeEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCceeEEEecc
Q 001184 576 EGALKRT-YIGFRKKSAGVVQFDTTRNRILAAGE-DNQIKFWDMDNVNMLTSTEAE 629 (1130)
Q Consensus 576 ~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~ 629 (1130)
++..... +..... ....+.++|+|+.+.+... .+.+.+-|..+..........
T Consensus 240 ~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~ 294 (381)
T COG3391 240 TGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG 294 (381)
T ss_pred CceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence 8877665 332222 3455789999998888744 488999999888777765443
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0075 Score=70.96 Aligned_cols=189 Identities=11% Similarity=0.061 Sum_probs=106.0
Q ss_pred CceeEEEEecCCCEEEEEe-------CC--eEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCC--------
Q 001184 834 DVVPCVALSKNDSYVMSAG-------GG--KVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED-------- 896 (1130)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~-------dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~d-------- 896 (1130)
..+...++||||+.++... |. .|.+++.. +.. ..+.. ....+.-.|+| ++..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence 4678899999999887654 32 46666653 333 33322 22478899999 66655555322
Q ss_pred ----CcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEE---EECCCCcccceeeEeccCCCCCCCeE
Q 001184 897 ----STIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIF---WNTDTWEKRKSIAIQLPAGKLPVGET 969 (1130)
Q Consensus 897 ----g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~v---wd~~~~~~~~~~~~~~~~~~~~~~v~ 969 (1130)
+.+++.++..++... ...+.|..+.|||||.+++... ++.|++ -....++........+.. .....+.
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~-~l~~~~~ 500 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGP-GLGDTAV 500 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeec-ccCCccc
Confidence 233333444443322 2346799999999999988776 477777 444444322211222211 1223457
Q ss_pred EEEEcCCCcEEEEEcCCcEEEEECCC-ceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEE
Q 001184 970 RVQFHSDQVRLLVNHETQLAIYDGSK-MECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIG 1034 (1130)
Q Consensus 970 ~~~~s~d~~~l~~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~ 1034 (1130)
++.|..++.+++...+....+|.+.- |.....+ .......++.+++=+++ .|+.+..+|.+.
T Consensus 501 ~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~-~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 501 SLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDAL-PSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cceEecCCEEEEEecCCCCceEEEecCCcccccc-CCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 89999999977654433344444432 2222221 22222457777777753 355555566433
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.025 Score=60.58 Aligned_cols=185 Identities=15% Similarity=0.088 Sum_probs=112.1
Q ss_pred eEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEeC-----CCCCeEEEEEeCCCCcEEEEEeC-----C----CcEEEE
Q 001184 837 PCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMS-----PPPASTFLAFHPQDNNIIAIGME-----D----STIQIY 902 (1130)
Q Consensus 837 ~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~sp~~~~~lasg~~-----d----g~v~iw 902 (1130)
.++..-.++..|+++ +..+.+++.+++..+..+.. .....+.+.+.| +|.+.+.... . ..=.||
T Consensus 69 ~~~~~~d~~g~Lv~~-~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~ly 146 (307)
T COG3386 69 SSGALIDAGGRLIAC-EHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLY 146 (307)
T ss_pred ccceeecCCCeEEEE-ccccEEEeccCCceeEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEE
Confidence 444443344444443 44456666665555333321 123456778888 6776665444 1 112466
Q ss_pred Eee-cCeEEEEEecCCCCeeEEEEccCCCeEEEEeCC-CcEEEEECCC--CcccceeeEeccCCCCCCCeEEEEEcCCCc
Q 001184 903 NVR-VDEVKTKLKGHQKHITGLAFSTNLNILVSSGSD-AQLIFWNTDT--WEKRKSIAIQLPAGKLPVGETRVQFHSDQV 978 (1130)
Q Consensus 903 d~~-~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D-g~i~vwd~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 978 (1130)
.+. .+..+..+..|-..-++|+||||++.|..+... +.|.-|++.. +.......... ....+...-.++...+|.
T Consensus 147 r~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~-~~~~~G~PDG~~vDadG~ 225 (307)
T COG3386 147 RVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVD-FDEEPGLPDGMAVDADGN 225 (307)
T ss_pred EEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEE-ccCCCCCCCceEEeCCCC
Confidence 665 566666677666666889999999888877664 7788887763 22111111111 111335566788888999
Q ss_pred EEEEEc-C-CcEEEEECCCceeeeeeecCCCCCCCeEEEEEC-CCCCEEEEEe
Q 001184 979 RLLVNH-E-TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYS-CNSQLIYATF 1028 (1130)
Q Consensus 979 ~l~~~~-d-~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s-~dg~~l~t~~ 1028 (1130)
+.++.. + +.|.+|+.. |+.+..+..+ ...+++++|- ++.+.|+..+
T Consensus 226 lw~~a~~~g~~v~~~~pd-G~l~~~i~lP---~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 226 LWVAAVWGGGRVVRFNPD-GKLLGEIKLP---VKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EEEecccCCceEEEECCC-CcEEEEEECC---CCCCccceEeCCCcCEEEEEe
Confidence 886543 3 389999999 9998888776 3678888884 4556555555
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.09 Score=56.61 Aligned_cols=233 Identities=15% Similarity=0.144 Sum_probs=133.9
Q ss_pred ccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeE
Q 001184 777 NSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKV 856 (1130)
Q Consensus 777 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i 856 (1130)
..++.|+.|.++| +.++++... ..... + .+...|..+...++-+.+++-+|+.+
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~---------------------~~~~~--i--~~~~~I~ql~vl~~~~~llvLsd~~l 58 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDP---------------------SKPTR--I--LKLSSITQLSVLPELNLLLVLSDGQL 58 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCC---------------------cccee--E--eecceEEEEEEecccCEEEEEcCCcc
Confidence 4577889998888 777765110 00000 0 12334999999999999998899999
Q ss_pred EEEECCCceeEEEE--------------eCCCCCeEEEE--EeCCCCcEEEEEeCCCcEEEEEeecC-----eEEEEEec
Q 001184 857 SLFNMMNFKVMTTF--------------MSPPPASTFLA--FHPQDNNIIAIGMEDSTIQIYNVRVD-----EVKTKLKG 915 (1130)
Q Consensus 857 ~iwd~~~~~~~~~~--------------~~~~~~i~~l~--~sp~~~~~lasg~~dg~v~iwd~~~~-----~~~~~l~~ 915 (1130)
.++++......... ......+...+ -...+...|+++.. ..|.+|..... +....+.-
T Consensus 59 ~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~k-k~i~i~~~~~~~~~f~~~~ke~~l 137 (275)
T PF00780_consen 59 YVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVK-KKILIYEWNDPRNSFSKLLKEISL 137 (275)
T ss_pred EEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEEC-CEEEEEEEECCcccccceeEEEEc
Confidence 99998765444311 11223344444 11224456665544 48999888753 34455543
Q ss_pred CCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccC-----CCCCCCeEEEEEcCCCcEEEEEcCCcEEE
Q 001184 916 HQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPA-----GKLPVGETRVQFHSDQVRLLVNHETQLAI 990 (1130)
Q Consensus 916 h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~s~d~~~l~~~~d~~i~v 990 (1130)
.+.+.+++|. ++.++.+..++ ..+.|+.++............ .........+.--+++.+|++.+ . +-+
T Consensus 138 -p~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~-~-~g~ 211 (275)
T PF00780_consen 138 -PDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYD-N-IGV 211 (275)
T ss_pred -CCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEec-c-eEE
Confidence 4778999998 55777777555 788899975542221111100 00011222333334456666533 2 333
Q ss_pred EECCCceeee-eeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccC
Q 001184 991 YDGSKMECIR-QWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIA 1048 (1130)
Q Consensus 991 ~d~~~~~~~~-~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~ 1048 (1130)
|=-..|+..+ ..... .....++++. ..||++.+. +.|.||++.+++++..+.
T Consensus 212 fv~~~G~~~r~~~i~W---~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 212 FVNKNGEPSRKSTIQW---SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIP 264 (275)
T ss_pred EEcCCCCcCcccEEEc---CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence 3223444333 22222 3355566663 558887764 569999999999877765
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00012 Score=80.63 Aligned_cols=207 Identities=17% Similarity=0.200 Sum_probs=133.1
Q ss_pred CeEEEEEeCC-CCcEEEEEeCCCcEEEEEeecCeE--EEEEecCCCCeeEEEEcc-CCCeEEEEe----CCCcEEEEECC
Q 001184 876 ASTFLAFHPQ-DNNIIAIGMEDSTIQIYNVRVDEV--KTKLKGHQKHITGLAFST-NLNILVSSG----SDAQLIFWNTD 947 (1130)
Q Consensus 876 ~i~~l~~sp~-~~~~lasg~~dg~v~iwd~~~~~~--~~~l~~h~~~V~~l~~s~-dg~~L~s~s----~Dg~i~vwd~~ 947 (1130)
.+.|++..-+ +..++++|..+|.|-+-.+....- -....+|....++++|++ |.++||.|- .|..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 3455554442 346899999999999887764322 244567888999999988 445666652 36779999999
Q ss_pred CCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-cCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECC-CCCEEE
Q 001184 948 TWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSC-NSQLIY 1025 (1130)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~-dg~~l~ 1025 (1130)
+.-........+.. .......+++|-.+.+.+.+| ..+.+.++|++.......... ...+..+.++| .+.|++
T Consensus 138 s~ltvPke~~~fs~-~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn----Tk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 138 SLLTVPKESPLFSS-STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN----TKYVQGITVDPFSPNYFC 212 (783)
T ss_pred cccCCCcccccccc-ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh----hhhcccceecCCCCCcee
Confidence 85211111111111 122456688888888888885 567899999884322221111 23667788888 777887
Q ss_pred EEeCCCcEEEEe-CCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCC-cEEEEeCCC
Q 001184 1026 ATFTDGSIGVFD-ADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDG-SVKVIEPSE 1094 (1130)
Q Consensus 1026 t~~~Dg~i~vwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg-~v~vW~~~~ 1094 (1130)
+-. ||.|.+|| ..+-+-......+. ..........++|.|....++++...|. +|+++++..
T Consensus 213 s~~-dg~iAiwD~~rnienpl~~i~~~------~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 213 SNS-DGDIAIWDTYRNIENPLQIILRN------ENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ccc-cCceeeccchhhhccHHHHHhhC------CCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 666 99999999 44333222221111 1122233667999998888899988864 788998863
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0071 Score=65.77 Aligned_cols=147 Identities=13% Similarity=0.112 Sum_probs=104.8
Q ss_pred cEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCe-------EEEEeCCCcEEEEECCCCcccceeeEecc
Q 001184 888 NIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNI-------LVSSGSDAQLIFWNTDTWEKRKSIAIQLP 960 (1130)
Q Consensus 888 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~-------L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~ 960 (1130)
.+|.++.....++-.|++.|+.+..++-|.+ |+-+.+.||.+. -+.|-.|..|.-||..-...-.....+..
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence 4555666667788999999999999998877 888888887542 22344577899999874322112222222
Q ss_pred CCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 001184 961 AGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039 (1130)
Q Consensus 961 ~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~ 1039 (1130)
.........|++-..+|..++.+.+|.|++||- .+..-++..+. ...+|..+..+.||++|++.+ +.++.+-++.
T Consensus 426 qy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPg--LG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPG--LGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccc--cCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 223336778888889998888899999999998 44444433332 278999999999999999877 6677777654
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.059 Score=54.23 Aligned_cols=241 Identities=12% Similarity=0.126 Sum_probs=135.3
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCe-EEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGE-ITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
-...-..++|+|.-.+-++.+-.-|+ ..++|.++++...... ..... -+-+| =.|||||.+|
T Consensus 66 lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~----------s~~~R-HfyGH------Gvfs~dG~~L 128 (366)
T COG3490 66 LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV----------SQEGR-HFYGH------GVFSPDGRLL 128 (366)
T ss_pred cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe----------cccCc-eeecc------cccCCCCcEE
Confidence 33445568899987766676666665 5788988776543100 00011 13345 3599999999
Q ss_pred EEEeCC-----CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcC------------------CCcEE
Q 001184 425 GVAFTK-----HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD------------------DKLIR 481 (1130)
Q Consensus 425 as~~~d-----~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~------------------d~~v~ 481 (1130)
...-.| |.|-|||...+ +...-++..|.-.-..+.|.+||+ .++.+.. .-++.
T Consensus 129 YATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGr--tlvvanGGIethpdfgR~~lNldsMePSlv 204 (366)
T COG3490 129 YATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGR--TLVVANGGIETHPDFGRTELNLDSMEPSLV 204 (366)
T ss_pred EeecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCc--EEEEeCCceecccccCccccchhhcCccEE
Confidence 876333 78999999854 455567888888889999999999 4444421 11344
Q ss_pred EEe-cCCCeeeEe--c--CCCcCEEEEeecccCCccEEEEEecCCc-----EEEEEccCCcceeeecCC-------CccE
Q 001184 482 VWD-LSGRKLFQF--E--GHEAPVYSVCPHQKENIHFIFSTAVDGK-----IKAWLYDNVGSRVDYDAP-------GLWC 544 (1130)
Q Consensus 482 iwd-~~~~~~~~~--~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~-----i~vwd~~~~~~~~~~~~~-------~~~v 544 (1130)
+.| .+|..+.+. . .+.-.|..++.. .|+..++.+-..|. -.+=-...++....+... ...|
T Consensus 205 lld~atG~liekh~Lp~~l~~lSiRHld~g--~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYi 282 (366)
T COG3490 205 LLDAATGNLIEKHTLPASLRQLSIRHLDIG--RDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYI 282 (366)
T ss_pred EEeccccchhhhccCchhhhhcceeeeeeC--CCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhh
Confidence 555 566555332 2 233445555542 33333322221111 000001111111111111 1246
Q ss_pred EEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001184 545 TTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDM 617 (1130)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 617 (1130)
-+++.+.+..+++..+. ..+...+||..+|..+..-.-.. +.-+.+...-+++.+.+|.+.++..
T Consensus 283 gsiA~n~~~glV~lTSP---~GN~~vi~da~tG~vv~~a~l~d-----aaGva~~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 283 GSIAANRRDGLVALTSP---RGNRAVIWDAATGAVVSEAALPD-----AAGVAAAKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred hheeecccCCeEEEecC---CCCeEEEEEcCCCcEEecccccc-----cccceeccCceEEecCCceEEeccc
Confidence 67888777777776653 25678899999998875543211 1222334445666677788887743
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.08 Score=56.76 Aligned_cols=223 Identities=17% Similarity=0.085 Sum_probs=134.1
Q ss_pred EEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCe
Q 001184 353 MDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHL 432 (1130)
Q Consensus 353 v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~ 432 (1130)
-.|.|+...++.+--..+.|.-|+..+++... +. +.+.+.++..-.++..|+++.. -
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~~-~p~~~~~~~~~d~~g~Lv~~~~--g 86 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------FP-SPGGFSSGALIDAGGRLIACEH--G 86 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------EE-CCCCcccceeecCCCeEEEEcc--c
Confidence 35777777777777778899999998776542 11 2233455555445555555532 3
Q ss_pred EEEEEecCCccceeeeee-ecC-CCCeeEEEEecCCCceEEEEEcC-----------CCcEEEEecCCCeeeEecCCCcC
Q 001184 433 IHLYTYQGSNDLCQSLEI-DAH-VGGVNDLAFSYPNKQLCIVTCGD-----------DKLIRVWDLSGRKLFQFEGHEAP 499 (1130)
Q Consensus 433 i~vwd~~~~~~~~~~~~~-~~h-~~~V~~i~~s~d~~~l~l~s~s~-----------d~~v~iwd~~~~~~~~~~~h~~~ 499 (1130)
+.+++.+++......... .+. ...-+++...|+|. +.++... -|.|+-.|..+..+..+..+-..
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~ 164 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTI 164 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEe
Confidence 677777655542222111 122 24567889999998 3333222 12344444457777777777777
Q ss_pred EEEEeecccCCccEEEEE-ecCCcEEEEEccC-----Ccc--eeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEE
Q 001184 500 VYSVCPHQKENIHFIFST-AVDGKIKAWLYDN-----VGS--RVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1130)
Q Consensus 500 v~~~~~~~~~~~~~l~s~-s~dg~i~vwd~~~-----~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1130)
-+.++|+|+. +.++.+ +..+.|..|+++. ... ...........-.++...+|.+.+++.. +.+.|..
T Consensus 165 ~NGla~SpDg--~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~---~g~~v~~ 239 (307)
T COG3386 165 PNGLAFSPDG--KTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW---GGGRVVR 239 (307)
T ss_pred cCceEECCCC--CEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc---CCceEEE
Confidence 7889997654 455544 5558888887762 111 1222233445667788888888764432 1248999
Q ss_pred eeCCCCceeEEEecccCceeEEEEEc-CCCCEEEEEe
Q 001184 572 WNESEGALKRTYIGFRKKSAGVVQFD-TTRNRILAAG 607 (1130)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 607 (1130)
|+.. |+++..+.-... .+.+++|. ++.+.|+..+
T Consensus 240 ~~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 240 FNPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred ECCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence 9987 888888887644 56666664 4455555544
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.038 Score=55.54 Aligned_cols=238 Identities=16% Similarity=0.121 Sum_probs=140.2
Q ss_pred eeEEEEecCCCE-EEEEe-CCe-EEEEECCCceeEEEEeCCCCC--eEEEEEeCCCCcEEEEEeCC-----CcEEEEEee
Q 001184 836 VPCVALSKNDSY-VMSAG-GGK-VSLFNMMNFKVMTTFMSPPPA--STFLAFHPQDNNIIAIGMED-----STIQIYNVR 905 (1130)
Q Consensus 836 i~~l~~s~dg~~-la~~~-dg~-i~iwd~~~~~~~~~~~~~~~~--i~~l~~sp~~~~~lasg~~d-----g~v~iwd~~ 905 (1130)
...++++|.-.. ++.+- -|+ ..++|..+.+...++....+. .-.=.||| ||.+|...-.| |.|-|||..
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecc
Confidence 345777775543 33343 355 788999888877776543332 22346999 88888755443 679999998
Q ss_pred cC-eEEEEEecCCCCeeEEEEccCCCeEEEEeCC------------------CcEEEEECCCCcccceeeEeccCCCCCC
Q 001184 906 VD-EVKTKLKGHQKHITGLAFSTNLNILVSSGSD------------------AQLIFWNTDTWEKRKSIAIQLPAGKLPV 966 (1130)
Q Consensus 906 ~~-~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~ 966 (1130)
.+ +.+..+..|.-.-..+.+.+||+.|+.+... -++.+-|..+++..... .++......
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh--~Lp~~l~~l 226 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKH--TLPASLRQL 226 (366)
T ss_pred cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhc--cCchhhhhc
Confidence 54 5567788887777889999999999987541 12333343333322211 112112225
Q ss_pred CeEEEEEcCCCcEEEEE------cCCcEEEEECCCceeeeeeecCC----CCCCCeEEEEECCCCCEEEEEe-CCCcEEE
Q 001184 967 GETRVQFHSDQVRLLVN------HETQLAIYDGSKMECIRQWVPQD----VLSSPISSAAYSCNSQLIYATF-TDGSIGV 1035 (1130)
Q Consensus 967 ~v~~~~~s~d~~~l~~~------~d~~i~v~d~~~~~~~~~~~~~~----~~~~~v~~v~~s~dg~~l~t~~-~Dg~i~v 1035 (1130)
.+..++..+||+.++.+ +|.--.|=....++.+.-+.... ....-|-+++..-+..+++..+ ..+...+
T Consensus 227 SiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi 306 (366)
T COG3490 227 SIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVI 306 (366)
T ss_pred ceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEE
Confidence 78889999999988763 12222222222333333322211 1134567788877666666655 5567889
Q ss_pred EeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 001184 1036 FDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEP 1092 (1130)
Q Consensus 1036 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~ 1092 (1130)
||..+|..+....... . .. +.- ...-+++.+.+|.++++.-
T Consensus 307 ~da~tG~vv~~a~l~d----a-------aG--va~---~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 307 WDAATGAVVSEAALPD----A-------AG--VAA---AKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred EEcCCCcEEecccccc----c-------cc--cee---ccCceEEecCCceEEeccc
Confidence 9999999875543211 0 11 111 2234566666888887743
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.16 Score=58.54 Aligned_cols=243 Identities=13% Similarity=0.144 Sum_probs=123.1
Q ss_pred cEEEEEEcCCCCEEEEE-eCC----CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCC--------
Q 001184 411 SVSRVAWSPDGNFIGVA-FTK----HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD-------- 477 (1130)
Q Consensus 411 ~V~~v~~spdg~~las~-~~d----~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d-------- 477 (1130)
.+...++||||+++|.+ +.. ..++++|+++|+.+... +... ....+.|.+|++. ++.+...+
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~--i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG--IENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE--EEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CCG
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc--cccc--ccceEEEeCCCCE-EEEEEeCcccccccCC
Confidence 45578999999999876 333 36999999999755422 2211 1233999999985 34443222
Q ss_pred --CcEEEEe-cCCCe--eeEecCCCcC--EEEEeecccCCccEEEEEecC----CcEEEEEccCC----cceeeecCCCc
Q 001184 478 --KLIRVWD-LSGRK--LFQFEGHEAP--VYSVCPHQKENIHFIFSTAVD----GKIKAWLYDNV----GSRVDYDAPGL 542 (1130)
Q Consensus 478 --~~v~iwd-~~~~~--~~~~~~h~~~--v~~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~----~~~~~~~~~~~ 542 (1130)
..|+.|. -+... ...+.+.... ...+.. +.++++|+..+.. ..+.+.++... .....+.....
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~--s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~ 277 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSR--SKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED 277 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE---TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEe--cCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence 2367777 33322 2344444433 334444 5566776654332 23566666653 12222222222
Q ss_pred cE-EEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCce---eEEEecccCceeEEEEEcCCCCEEEEE-eCCC--cEEEE
Q 001184 543 WC-TTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL---KRTYIGFRKKSAGVVQFDTTRNRILAA-GEDN--QIKFW 615 (1130)
Q Consensus 543 ~v-~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg--~i~vw 615 (1130)
.+ ..+... +..+...+...-..+.|...++..... ...+..+.. .+....+...+++|+.. ..++ .|+++
T Consensus 278 ~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~ 354 (414)
T PF02897_consen 278 GVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDE-DVSLEDVSLFKDYLVLSYRENGSSRLRVY 354 (414)
T ss_dssp S-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SS-SEEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred ceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCC-ceeEEEEEEECCEEEEEEEECCccEEEEE
Confidence 23 333333 443333332334467888888877653 224444333 22323333345555553 3443 58899
Q ss_pred eCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeC----CCcEEEEEcCCC
Q 001184 616 DMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTA----DQGIKILANADG 664 (1130)
Q Consensus 616 d~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~ 664 (1130)
++..+.....+..... +.|..+...+++..+..... -+++..||+.++
T Consensus 355 ~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~ 406 (414)
T PF02897_consen 355 DLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG 406 (414)
T ss_dssp ETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred ECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 9984555555554432 23555555555554443322 246677777766
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.076 Score=63.48 Aligned_cols=103 Identities=11% Similarity=0.153 Sum_probs=70.3
Q ss_pred CCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCC-------CCEEEEEeCCCcEEEEeCCCCc--e
Q 001184 552 DGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTT-------RNRILAAGEDNQIKFWDMDNVN--M 622 (1130)
Q Consensus 552 ~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~l~~~~~dg~i~vwd~~~~~--~ 622 (1130)
+.++|+... .....|+-.|++.|+.+..+..+...++ ..+.|+ ....+.|-.++.+..||.+-.. +
T Consensus 492 d~~mil~~~---~~~~~ly~mDLe~GKVV~eW~~~~~~~v--~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~ 566 (794)
T PF08553_consen 492 DRNMILLDP---NNPNKLYKMDLERGKVVEEWKVHDDIPV--VDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKL 566 (794)
T ss_pred ccceEeecC---CCCCceEEEecCCCcEEEEeecCCCcce--eEecccccccccCCCceEEEECCCceEEeccCCCCCce
Confidence 444555432 2367899999999999999998776444 444453 2346677788899999988632 2
Q ss_pred eEE-EeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001184 623 LTS-TEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1130)
Q Consensus 623 ~~~-~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~ 660 (1130)
+.. ...........|++-+.+| +||+|+.+|.||+||
T Consensus 567 v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd 604 (794)
T PF08553_consen 567 VDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYD 604 (794)
T ss_pred eeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeec
Confidence 211 1111233356778777776 689999999999998
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.15 Score=55.00 Aligned_cols=229 Identities=13% Similarity=0.096 Sum_probs=124.9
Q ss_pred ecCCCEEEEEeCCeEEEEECC-CceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEE--------
Q 001184 842 SKNDSYVMSAGGGKVSLFNMM-NFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK-------- 912 (1130)
Q Consensus 842 s~dg~~la~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~-------- 912 (1130)
...++.|+.|.++.+.+++.. ......... ...|..+...| .-..|++-+ |+.++++++..-.....
T Consensus 4 ~~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~--~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 4 DSWGDRLLVGTEDGLYVYDLSDPSKPTRILK--LSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred ccCCCEEEEEECCCEEEEEecCCccceeEee--cceEEEEEEec-ccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence 456788888885449999993 333333332 23399999999 444444443 59999999875433321
Q ss_pred ------EecCCCCeeEEE--EccCCCeEEEEeCCCcEEEEECCCCcccc-eeeEeccCCCCCCCeEEEEEcCCCcEEEEE
Q 001184 913 ------LKGHQKHITGLA--FSTNLNILVSSGSDAQLIFWNTDTWEKRK-SIAIQLPAGKLPVGETRVQFHSDQVRLLVN 983 (1130)
Q Consensus 913 ------l~~h~~~V~~l~--~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 983 (1130)
-......+...+ -...+...+.+...+.|.+|......... .... +...+..+..++|. +..++++
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~k---e~~lp~~~~~i~~~--~~~i~v~ 154 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLK---EISLPDPPSSIAFL--GNKICVG 154 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeE---EEEcCCCcEEEEEe--CCEEEEE
Confidence 011222344444 12233334444445588888887642111 1111 11222678888888 6667777
Q ss_pred cCCcEEEEECCCceeeeeeecCCC---------CCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccc
Q 001184 984 HETQLAIYDGSKMECIRQWVPQDV---------LSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMS 1054 (1130)
Q Consensus 984 ~d~~i~v~d~~~~~~~~~~~~~~~---------~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~ 1054 (1130)
..+...+.|+.++.....+..... ...++..+... ++.+|++- |..-..-|. .|+....- ..
T Consensus 155 ~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~-----~i 225 (275)
T PF00780_consen 155 TSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKS-----TI 225 (275)
T ss_pred eCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCccc-----EE
Confidence 788899999997776554432211 12344444444 45666653 333333344 34422211 01
Q ss_pred cCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCcc
Q 001184 1055 QASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETER 1097 (1130)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~~ 1097 (1130)
.+ . ..+..+.+.. + +|+..+.++ |.||++.+++.
T Consensus 226 ~W---~--~~p~~~~~~~--p-yli~~~~~~-iEV~~~~~~~l 259 (275)
T PF00780_consen 226 QW---S--SAPQSVAYSS--P-YLIAFSSNS-IEVRSLETGEL 259 (275)
T ss_pred Ec---C--CchhEEEEEC--C-EEEEECCCE-EEEEECcCCcE
Confidence 11 1 1233455543 3 555555444 99999999874
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.098 Score=57.69 Aligned_cols=176 Identities=17% Similarity=0.174 Sum_probs=103.1
Q ss_pred eEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC----CCEEEEEeC---------C-CeEEEE
Q 001184 371 EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD----GNFIGVAFT---------K-HLIHLY 436 (1130)
Q Consensus 371 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd----g~~las~~~---------d-~~i~vw 436 (1130)
.|+|.|..+.+.+....+.- ..+-..+..+.+..+ ..+|++|+. . |.|.++
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~---------------~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~ 67 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEP---------------NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVF 67 (321)
T ss_dssp EEEEEETTTSSEEEEEEEET---------------TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEE
T ss_pred EEEEEeCCCCeEEEEEECCC---------------CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEE
Confidence 67888888877665332210 011112334444443 468887743 2 889999
Q ss_pred EecCC----ccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEec--CCCcCEEEEeecccC
Q 001184 437 TYQGS----NDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFE--GHEAPVYSVCPHQKE 509 (1130)
Q Consensus 437 d~~~~----~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~--~h~~~v~~~~~~~~~ 509 (1130)
++... ..++.... ....++|++++-- .+. ++++. .+.|.+|+ ...+.+.... .....+.++... .
T Consensus 68 ~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~--lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~ 139 (321)
T PF03178_consen 68 EISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR--LVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--K 139 (321)
T ss_dssp EECSS-----EEEEEEE-EEESS-EEEEEEE-TTE--EEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--T
T ss_pred EEEcccccceEEEEEEE-EeecCcceEhhhh-CCE--EEEee--cCEEEEEEccCcccchhhheecceEEEEEEecc--c
Confidence 99884 23333333 3457889999877 343 34444 37899999 4444132222 233366666543 2
Q ss_pred CccEEEEEecCCcEEEEEccCCcc-ee--eecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC
Q 001184 510 NIHFIFSTAVDGKIKAWLYDNVGS-RV--DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1130)
Q Consensus 510 ~~~~l~s~s~dg~i~vwd~~~~~~-~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1130)
++++.|.....+.++.++.... .. .......+++++.|-++++.++.+- .+|.+.++...
T Consensus 140 --~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D----~~gnl~~l~~~ 202 (321)
T PF03178_consen 140 --NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD----KDGNLFVLRYN 202 (321)
T ss_dssp --TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE----TTSEEEEEEE-
T ss_pred --cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc----CCCeEEEEEEC
Confidence 5899999889888887665333 22 2233456789999987777666553 37888887754
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.66 Score=51.83 Aligned_cols=286 Identities=13% Similarity=0.136 Sum_probs=157.7
Q ss_pred cCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEec-----CCCEEEEEe
Q 001184 778 SGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSK-----NDSYVMSAG 852 (1130)
Q Consensus 778 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~-----dg~~la~~~ 852 (1130)
+...|++|+-.|.++||+.......+.. .++.. .-+.+|..+..-. +...||+-.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~----------------lllE~----~l~~PILqv~~G~F~s~~~~~~LaVLh 95 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPED----------------LLLET----QLKDPILQVECGKFVSGSEDLQLAVLH 95 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCcc----------------EEEEE----ecCCcEEEEEeccccCCCCcceEEEec
Confidence 3467889999999999986443332221 11111 2345566555432 334666656
Q ss_pred CCeEEEEECCC--ce-------eEEEEeCCC--CCeEEEEEeCC----CCcEEEEEeCCCcEEEEEeecCeEEEEEecCC
Q 001184 853 GGKVSLFNMMN--FK-------VMTTFMSPP--PASTFLAFHPQ----DNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQ 917 (1130)
Q Consensus 853 dg~i~iwd~~~--~~-------~~~~~~~~~--~~i~~l~~sp~----~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~ 917 (1130)
-..+.||.+.. +. .+..+..|. .....++.-|. +..++.+-+.||.+.+|+-+.-.....+.. .
T Consensus 96 P~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~ 174 (418)
T PF14727_consen 96 PRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-F 174 (418)
T ss_pred CCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-C
Confidence 77788887621 11 122222232 22333444332 247899999999999999876655455544 2
Q ss_pred CCeeEEEEccCCCeEEEEeCCCcEEEEECCCCc-------------------ccceeeEeccCCCCCCCeEEEEEcCCCc
Q 001184 918 KHITGLAFSTNLNILVSSGSDAQLIFWNTDTWE-------------------KRKSIAIQLPAGKLPVGETRVQFHSDQV 978 (1130)
Q Consensus 918 ~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~-------------------~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 978 (1130)
--...++|.+.-..+++++.+..+.-|....-. +.........-+.....+..+.++....
T Consensus 175 llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~ 254 (418)
T PF14727_consen 175 LLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSES 254 (418)
T ss_pred CCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCc
Confidence 223457888888899999998888888753200 0001111111111112233334443444
Q ss_pred EEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEE----CCCCC---EEEEEeCCCcEEEEeCCCcccccccCCCc
Q 001184 979 RLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAY----SCNSQ---LIYATFTDGSIGVFDADSLRLRCRIAPSA 1051 (1130)
Q Consensus 979 ~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~----s~dg~---~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~ 1051 (1130)
.+++=..+++.+.+.. |......+-. -.+.....| ..++. .++.++.++++.||.=.+....+.+.
T Consensus 255 ~IvvLger~Lf~l~~~-G~l~~~krLd---~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~--- 327 (418)
T PF14727_consen 255 DIVVLGERSLFCLKDN-GSLRFQKRLD---YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLP--- 327 (418)
T ss_pred eEEEEecceEEEEcCC-CeEEEEEecC---CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCC---
Confidence 4444445566666653 4433332222 112222222 12322 57888889999999866555555543
Q ss_pred ccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCccCCc
Q 001184 1052 YMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWG 1100 (1130)
Q Consensus 1052 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~~~w~ 1100 (1130)
+....+.++..+.-+.+|++-+.+|.+.+-=+-+++.-..
T Consensus 328 ---------~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~~~ 367 (418)
T PF14727_consen 328 ---------HVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPSLFQ 367 (418)
T ss_pred ---------CCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCCcccc
Confidence 1122344444444567999999999999987777775443
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.35 Score=49.59 Aligned_cols=189 Identities=12% Similarity=0.142 Sum_probs=120.7
Q ss_pred CCceeEEEEecCCCEEEEEe-CC--eEEEEECCCceeEEEEeCCCC-CeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCe
Q 001184 833 EDVVPCVALSKNDSYVMSAG-GG--KVSLFNMMNFKVMTTFMSPPP-ASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE 908 (1130)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~-dg--~i~iwd~~~~~~~~~~~~~~~-~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~ 908 (1130)
......+.|..+|.++-+.+ -| .|+.+|+.+++......-... ---.++.. ++++....-.++...+||..+-+
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccce
Confidence 44566788888888877776 34 599999999998776653322 12334444 44666667788999999999999
Q ss_pred EEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE-EcCCc
Q 001184 909 VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQ 987 (1130)
Q Consensus 909 ~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~ 987 (1130)
.+.++.- .+.=+.|+ .||+.|+..+....|.++|.++.+......... .+..-..+..+.+. +|...|- =....
T Consensus 122 ~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~-~g~pv~~LNELE~i-~G~IyANVW~td~ 196 (264)
T PF05096_consen 122 KIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD-NGRPVSNLNELEYI-NGKIYANVWQTDR 196 (264)
T ss_dssp EEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE-TTEE---EEEEEEE-TTEEEEEETTSSE
T ss_pred EEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEE-CCEECCCcEeEEEE-cCEEEEEeCCCCe
Confidence 9988864 35667777 578888888888899999998876655443332 11111345556665 5554443 24678
Q ss_pred EEEEECCCceeeeeeecC---------C---CCCCCeEEEEECCCCCEEEEEe
Q 001184 988 LAIYDGSKMECIRQWVPQ---------D---VLSSPISSAAYSCNSQLIYATF 1028 (1130)
Q Consensus 988 i~v~d~~~~~~~~~~~~~---------~---~~~~~v~~v~~s~dg~~l~t~~ 1028 (1130)
|...|..+|+....+... . ....-.+.||+.|++..|+..+
T Consensus 197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 889999999988765211 0 0134579999998877666555
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.093 Score=61.96 Aligned_cols=201 Identities=13% Similarity=0.102 Sum_probs=108.6
Q ss_pred CCeEEEEEeCCCCcEEEEEe------CCC--cEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCC--------
Q 001184 875 PASTFLAFHPQDNNIIAIGM------EDS--TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSD-------- 938 (1130)
Q Consensus 875 ~~i~~l~~sp~~~~~lasg~------~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D-------- 938 (1130)
..+...+++| +++.+|... .|+ .|.+++. .+.......+. ..+.-.|+|||+.|.+....
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4578899999 666655544 244 4555554 23222223332 37889999999988877533
Q ss_pred ----CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEE---EECCCceeeee-----eecCC
Q 001184 939 ----AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAI---YDGSKMECIRQ-----WVPQD 1006 (1130)
Q Consensus 939 ----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v---~d~~~~~~~~~-----~~~~~ 1006 (1130)
+.+.+.+++.++... .....|..+.|||||..++.-.+++|++ -....|. ... +..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---------~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~~l~~-- 493 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---------RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPREVGP-- 493 (591)
T ss_pred cCCCceEEEEeccCchhhh---------ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccEEeec--
Confidence 122222333322111 1235799999999999999866778877 4544554 111 111
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC-cccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCC
Q 001184 1007 VLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS-LRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDG 1085 (1130)
Q Consensus 1007 ~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg 1085 (1130)
.....+.++.|..++.++ ++..++...+|.+.- |.....+.... ....++.++-.+ .-+..+..+|
T Consensus 494 ~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n---------~~~~v~~vaa~~---~~iyv~~~~g 560 (591)
T PRK13616 494 GLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRN---------LSAPVVAVAASP---STVYVTDARA 560 (591)
T ss_pred ccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCC---------ccCceEEEecCC---ceEEEEcCCc
Confidence 113346889999999965 555555555564332 22211111110 112234455444 2466667777
Q ss_pred cEEEEeCCCCccCCccccc
Q 001184 1086 SVKVIEPSETERKWGVAVP 1104 (1130)
Q Consensus 1086 ~v~vW~~~~~~~~w~~~~p 1104 (1130)
.+.+=.-.++..-|..-.+
T Consensus 561 ~~~l~~~~~~~~~W~ev~~ 579 (591)
T PRK13616 561 VLQLPNSDSGDQYWREVPG 579 (591)
T ss_pred eEEecCCCCCCCCceECcc
Confidence 3333222344455854443
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.048 Score=64.65 Aligned_cols=227 Identities=9% Similarity=0.040 Sum_probs=116.4
Q ss_pred eEEEEECCCceeEEEEeCCCCCe-EEEEEeCCCCcEEEEEeCC------CcEEEEEeecCeEEE--EEecCCCCeeEEEE
Q 001184 855 KVSLFNMMNFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGMED------STIQIYNVRVDEVKT--KLKGHQKHITGLAF 925 (1130)
Q Consensus 855 ~i~iwd~~~~~~~~~~~~~~~~i-~~l~~sp~~~~~lasg~~d------g~v~iwd~~~~~~~~--~l~~h~~~V~~l~~ 925 (1130)
.+..||..+.+-...-....... .+++. - ++.+.+.|+.+ ..+..||..+..-.. .+....... .+.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~--~~~ 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-V-DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF--SLA 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-E-CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce--eEE
Confidence 46778877654332211111111 22333 2 66788888754 347788877664221 111111111 122
Q ss_pred ccCCCeEEEEeCCC-----cEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEc-C--------------
Q 001184 926 STNLNILVSSGSDA-----QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-E-------------- 985 (1130)
Q Consensus 926 s~dg~~L~s~s~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d-------------- 985 (1130)
.-+|+..+.||.++ ++..||..+.+.........+.. ....+ .-+|...+.|. +
T Consensus 349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~----~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~ 422 (557)
T PHA02713 349 VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALS----SYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSI 422 (557)
T ss_pred EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccc----cccEE--EECCEEEEEeCCCcccccccccccccc
Confidence 33677778888764 47889988754322211111111 11111 22566555542 2
Q ss_pred ---------CcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCC------CcEEEEeCCC-cccccccCC
Q 001184 986 ---------TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD------GSIGVFDADS-LRLRCRIAP 1049 (1130)
Q Consensus 986 ---------~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D------g~i~vwd~~~-~~~~~~~~~ 1049 (1130)
..+..||..+.+-...-.... ......+..-+|++.+.|+.+ ..+..||..+ .+....-..
T Consensus 423 ~~~~~~~~~~~ve~YDP~td~W~~v~~m~~---~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m 499 (557)
T PHA02713 423 DMEEDTHSSNKVIRYDTVNNIWETLPNFWT---GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTT 499 (557)
T ss_pred cccccccccceEEEECCCCCeEeecCCCCc---ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcccc
Confidence 347788888765432211111 111111223467777777754 2467899887 444322111
Q ss_pred CcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCC--cEEEEeCCCCccCCcccccCCCC
Q 001184 1050 SAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDG--SVKVIEPSETERKWGVAVPVDNG 1108 (1130)
Q Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg--~v~vW~~~~~~~~w~~~~p~~~~ 1108 (1130)
.. . .....+.+. ++.+.++||.|| ++..+|+.+.+ |....|--..
T Consensus 500 ~~----~----r~~~~~~~~----~~~iyv~Gg~~~~~~~e~yd~~~~~--W~~~~~~~~~ 546 (557)
T PHA02713 500 ES----R----LSALHTILH----DNTIMMLHCYESYMLQDTFNVYTYE--WNHICHQHSN 546 (557)
T ss_pred Cc----c----cccceeEEE----CCEEEEEeeecceeehhhcCccccc--ccchhhhcCC
Confidence 11 0 111122222 578999999998 78889998888 9887776543
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.76 Score=49.02 Aligned_cols=193 Identities=10% Similarity=0.068 Sum_probs=94.6
Q ss_pred EEEEecCCCEEEEEeCCeEEEEECCCcee-EEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecC
Q 001184 838 CVALSKNDSYVMSAGGGKVSLFNMMNFKV-MTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGH 916 (1130)
Q Consensus 838 ~l~~s~dg~~la~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h 916 (1130)
.+....++..++++..|.|..=. +.++. ..........+..+..++ ++++++++..-....-||--...-...-+.-
T Consensus 108 ~i~~l~~~~~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~ 185 (302)
T PF14870_consen 108 GITALGDGSAELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNS 185 (302)
T ss_dssp EEEEEETTEEEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--S
T ss_pred EEEEcCCCcEEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCc
Confidence 33333444444444445433322 12222 222334456788888888 8998888855544456664322111222234
Q ss_pred CCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCc
Q 001184 917 QKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKM 996 (1130)
Q Consensus 917 ~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~ 996 (1130)
+..|.+|.|+||+...+.+ ..|.|++=+.......-.. ...+.....-.+..++|.+++...+++..+.+ +...+.|
T Consensus 186 ~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~-~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgG 262 (302)
T PF14870_consen 186 SRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSE-PIIPIKTNGYGILDLAYRPPNEIWAVGGSGTL-LVSTDGG 262 (302)
T ss_dssp SS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE----B-TTSS--S-EEEEEESSSS-EEEEESTT-E-EEESSTT
T ss_pred cceehhceecCCCCEEEEe-CCcEEEEccCCCCcccccc-ccCCcccCceeeEEEEecCCCCEEEEeCCccE-EEeCCCC
Confidence 5789999999998766644 8888887762211100000 00111122245889999999999998877754 4455556
Q ss_pred eeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 001184 997 ECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVF 1036 (1130)
Q Consensus 997 ~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vw 1036 (1130)
+.-..-..........+.|.|.++.+-++.| .+|.|.-|
T Consensus 263 ktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 263 KTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp SS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred ccceECccccCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 6555444333335678999998776666655 58887665
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.39 Score=53.44 Aligned_cols=83 Identities=13% Similarity=-0.043 Sum_probs=53.8
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcC--------------CC
Q 001184 1009 SSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHP--------------QE 1074 (1130)
Q Consensus 1009 ~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~ 1074 (1130)
...+.+++.+|++++.|+..+=|+|.++|+.++..+..+..-. .++..+.-...-.. ..
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYR-------dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~ 379 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYR-------DAQCGWIEVPEEGDRDRSNSNSPKSSSRFA 379 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCc-------cceEEEEEeecccccccccccccCCCCcce
Confidence 4568999999999998888777999999999988775553211 00100000000000 01
Q ss_pred CCEEEEEeCCCcEEEEeCCCCccC
Q 001184 1075 PNQLAVGLTDGSVKVIEPSETERK 1098 (1130)
Q Consensus 1075 ~~~l~s~~~Dg~v~vW~~~~~~~~ 1098 (1130)
-.+++-+-..|.|.||++..++.-
T Consensus 380 l~LvIyaprRg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 380 LFLVIYAPRRGILEVWSMRQGPRV 403 (415)
T ss_pred EEEEEEeccCCeEEEEecCCCCEE
Confidence 125566777999999999988753
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.53 Score=52.42 Aligned_cols=85 Identities=12% Similarity=0.211 Sum_probs=61.7
Q ss_pred CccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCC-----------------E-
Q 001184 541 GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN-----------------R- 602 (1130)
Q Consensus 541 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----------------~- 602 (1130)
...+.+++.+|++++.++. |.-|+|.++|+.++..++.++|..+..+.-+.....+. +
T Consensus 307 ~R~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred CceEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 3457889999998877764 45899999999999999999988775444332222111 2
Q ss_pred EEEEeCCCcEEEEeCCCCceeEEEecc
Q 001184 603 ILAAGEDNQIKFWDMDNVNMLTSTEAE 629 (1130)
Q Consensus 603 l~~~~~dg~i~vwd~~~~~~~~~~~~~ 629 (1130)
++-+-.-|.|.||.+.+|..+..+...
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEEEeC
Confidence 333667899999999999888777643
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.45 Score=52.04 Aligned_cols=237 Identities=13% Similarity=0.092 Sum_probs=108.9
Q ss_pred cCCeEEEee-eCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe---C
Q 001184 778 SGIGILALW-SNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG---G 853 (1130)
Q Consensus 778 ~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~---d 853 (1130)
+.++|++.+ ..+.|.+.|..+....|.-...... .++... ..-.....+..-|+|+.++++- +
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~---------~ev~~k----~g~s~PHT~Hclp~G~imIS~lGd~~ 152 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEP---------EEVFEK----TGLSRPHTVHCLPDGRIMISALGDAD 152 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-H---------HHHHHH----H-EEEEEEEEE-SS--EEEEEEEETT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCH---------HHHHhh----cCCCCCceeeecCCccEEEEeccCCC
Confidence 456677766 4788999888765444332211110 000000 0011222334457888887762 2
Q ss_pred ----CeEEEEECCCceeEEEEeCCCC---CeEEEEEeCCCCcEEEEEeC--------------------CCcEEEEEeec
Q 001184 854 ----GKVSLFNMMNFKVMTTFMSPPP---ASTFLAFHPQDNNIIAIGME--------------------DSTIQIYNVRV 906 (1130)
Q Consensus 854 ----g~i~iwd~~~~~~~~~~~~~~~---~i~~l~~sp~~~~~lasg~~--------------------dg~v~iwd~~~ 906 (1130)
|.+.++|-++.+.+...+.... --..+-+.| ..+++++... ..++.+||+.+
T Consensus 153 G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~ 231 (461)
T PF05694_consen 153 GNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST 231 (461)
T ss_dssp S-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT
T ss_pred CCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC
Confidence 5699999999988888764322 245667788 6666766543 34799999999
Q ss_pred CeEEEEEecCCC--CeeEEEEccC--CCeEEEEe-CCCcEEE-EECCCCcccceeeEeccCCCC---------------C
Q 001184 907 DEVKTKLKGHQK--HITGLAFSTN--LNILVSSG-SDAQLIF-WNTDTWEKRKSIAIQLPAGKL---------------P 965 (1130)
Q Consensus 907 ~~~~~~l~~h~~--~V~~l~~s~d--g~~L~s~s-~Dg~i~v-wd~~~~~~~~~~~~~~~~~~~---------------~ 965 (1130)
.+.++++.--.. ...-|.|..+ ..+=++++ -..+|.. |.-+.++-.....+.++.... +
T Consensus 232 r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P 311 (461)
T PF05694_consen 232 RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVP 311 (461)
T ss_dssp TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-
T ss_pred CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCC
Confidence 999999874332 3456677554 33333322 3334443 333444444444444433210 3
Q ss_pred CCeEEEEEcCCCcEEEEEc--CCcEEEEECCCc---eeeeeeecCC-------------CCCCCeEEEEECCCCCEEEEE
Q 001184 966 VGETRVQFHSDQVRLLVNH--ETQLAIYDGSKM---ECIRQWVPQD-------------VLSSPISSAAYSCNSQLIYAT 1027 (1130)
Q Consensus 966 ~~v~~~~~s~d~~~l~~~~--d~~i~v~d~~~~---~~~~~~~~~~-------------~~~~~v~~v~~s~dg~~l~t~ 1027 (1130)
.-++.|..|.|.++|.++. .|.++.||+.+- +.+.++.... ...+....+..|-||+.|...
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 4579999999999999974 899999999863 2333322110 112334778889999977776
Q ss_pred e
Q 001184 1028 F 1028 (1130)
Q Consensus 1028 ~ 1028 (1130)
+
T Consensus 392 n 392 (461)
T PF05694_consen 392 N 392 (461)
T ss_dssp -
T ss_pred e
Confidence 5
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.003 Score=43.40 Aligned_cols=39 Identities=33% Similarity=0.609 Sum_probs=34.8
Q ss_pred CeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEE
Q 001184 907 DEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945 (1130)
Q Consensus 907 ~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd 945 (1130)
+++...+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355677788999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0052 Score=68.34 Aligned_cols=94 Identities=16% Similarity=0.397 Sum_probs=71.3
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEE-EEEEcCCCCEEE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVS-RVAWSPDGNFIG 425 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~v~~spdg~~la 425 (1130)
...|.-+.|+|.-. ++|.+..+|.|.+..++- + |+|. +.-|...++ +++|.|||+.||
T Consensus 20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n~-q-------Rlwt------------ip~p~~~v~~sL~W~~DGklla 78 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLNW-Q-------RLWT------------IPIPGENVTASLCWRPDGKLLA 78 (665)
T ss_pred ccceEEEEEcCccc-hhheeccCCcEEEEEecc-c-------eeEe------------ccCCCCccceeeeecCCCCEEE
Confidence 45788899999887 799999999999988772 2 2343 333555566 999999999999
Q ss_pred EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEe
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFS 463 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s 463 (1130)
+|-.||+|++-|++++..+... ...-...|.++-|.
T Consensus 79 Vg~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 79 VGFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWD 114 (665)
T ss_pred EEecCCeEEEEEccCCCceecc--ccccccchheeecc
Confidence 9999999999999998755431 12234456777775
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0056 Score=68.15 Aligned_cols=93 Identities=11% Similarity=0.132 Sum_probs=77.1
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCee-EEEEccCCCeEEEEeCCCcEEEEECCCCcccc
Q 001184 875 PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHIT-GLAFSTNLNILVSSGSDAQLIFWNTDTWEKRK 953 (1130)
Q Consensus 875 ~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~-~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~ 953 (1130)
..+.-+.|+| .-.++|++..+|.|-++.+. .+.+.++.-|..+++ +++|.|||+.||.|-.||+|++-|++++....
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4577899999 88999999999999999998 777888887888888 99999999999999999999999999987655
Q ss_pred eeeEeccCCCCCCCeEEEEEc
Q 001184 954 SIAIQLPAGKLPVGETRVQFH 974 (1130)
Q Consensus 954 ~~~~~~~~~~~~~~v~~~~~s 974 (1130)
...... ...+.++.|+
T Consensus 99 ~~~~s~-----e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSV-----ETDISKGIWD 114 (665)
T ss_pred cccccc-----ccchheeecc
Confidence 532221 2456667776
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.16 Score=56.12 Aligned_cols=176 Identities=15% Similarity=0.111 Sum_probs=106.1
Q ss_pred cEEEEe-cCCCeeeEecC-CCcCEEEEeecccC-----CccEEEEEec----------CCcEEEEEccCC----ccee--
Q 001184 479 LIRVWD-LSGRKLFQFEG-HEAPVYSVCPHQKE-----NIHFIFSTAV----------DGKIKAWLYDNV----GSRV-- 535 (1130)
Q Consensus 479 ~v~iwd-~~~~~~~~~~~-h~~~v~~~~~~~~~-----~~~~l~s~s~----------dg~i~vwd~~~~----~~~~-- 535 (1130)
.|++.| .+.+.+..+.- ....+.+++...-. ...+++.|+. .|+|.++++... ....
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 577888 66666655442 22334444432211 2467777753 289999999884 1111
Q ss_pred eecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc-eeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEE
Q 001184 536 DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA-LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKF 614 (1130)
Q Consensus 536 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 614 (1130)
.-....++|++++-- +++ |+++. .+.|++|++...+ ....-..+....+.+ ....++++++|..-..+.+
T Consensus 83 ~~~~~~g~V~ai~~~-~~~-lv~~~-----g~~l~v~~l~~~~~l~~~~~~~~~~~i~s--l~~~~~~I~vgD~~~sv~~ 153 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGR-LVVAV-----GNKLYVYDLDNSKTLLKKAFYDSPFYITS--LSVFKNYILVGDAMKSVSL 153 (321)
T ss_dssp EEEEESS-EEEEEEE-TTE-EEEEE-----TTEEEEEEEETTSSEEEEEEE-BSSSEEE--EEEETTEEEEEESSSSEEE
T ss_pred EEEeecCcceEhhhh-CCE-EEEee-----cCEEEEEEccCcccchhhheecceEEEEE--EeccccEEEEEEcccCEEE
Confidence 112235578888766 444 55554 6789999998877 544433323323444 4444679999998888888
Q ss_pred EeCCC-CceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001184 615 WDMDN-VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANAD 663 (1130)
Q Consensus 615 wd~~~-~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 663 (1130)
+..+. ...+..+........+.++.|-+++..++++..+|.+.++....
T Consensus 154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 154 LRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 86543 33344444443344678888886667999999999999998753
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.73 E-value=1.3 Score=48.85 Aligned_cols=112 Identities=24% Similarity=0.278 Sum_probs=58.9
Q ss_pred CEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC----CCEE
Q 001184 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD----GNFI 424 (1130)
Q Consensus 349 ~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd----g~~l 424 (1130)
..++++|.|||+ +++ +...|.|++++ ..+.... .+. +. ..+..........++++|+ +.+.
T Consensus 3 ~P~~~a~~pdG~-l~v-~e~~G~i~~~~-~~g~~~~--~v~--~~--------~~v~~~~~~gllgia~~p~f~~n~~lY 67 (331)
T PF07995_consen 3 NPRSMAFLPDGR-LLV-AERSGRIWVVD-KDGSLKT--PVA--DL--------PEVFADGERGLLGIAFHPDFASNGYLY 67 (331)
T ss_dssp SEEEEEEETTSC-EEE-EETTTEEEEEE-TTTEECE--EEE--E---------TTTBTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred CceEEEEeCCCc-EEE-EeCCceEEEEe-CCCcCcc--eec--cc--------ccccccccCCcccceeccccCCCCEEE
Confidence 568999999997 555 46699999999 4444311 000 00 0123455678899999995 4333
Q ss_pred EEEeCC--------CeEEEEEecCCc-cce---ee-eeeec---CCCCeeEEEEecCCCceEEEEEcCC
Q 001184 425 GVAFTK--------HLIHLYTYQGSN-DLC---QS-LEIDA---HVGGVNDLAFSYPNKQLCIVTCGDD 477 (1130)
Q Consensus 425 as~~~d--------~~i~vwd~~~~~-~~~---~~-~~~~~---h~~~V~~i~~s~d~~~l~l~s~s~d 477 (1130)
++.+.. ..|.-|....+. .+. .. ..+.. ....-..|+|.|||. +.++.+..
T Consensus 68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~--LYvs~G~~ 134 (331)
T PF07995_consen 68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK--LYVSVGDG 134 (331)
T ss_dssp EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE--EEEEEB-T
T ss_pred EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc--EEEEeCCC
Confidence 333321 245555555441 111 11 11111 233456799999996 44554443
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.45 Score=50.02 Aligned_cols=145 Identities=12% Similarity=0.085 Sum_probs=90.7
Q ss_pred CceeEEEEecCCCEEEEEe--CCe--EEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEE-eecCe
Q 001184 834 DVVPCVALSKNDSYVMSAG--GGK--VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYN-VRVDE 908 (1130)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~--dg~--i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd-~~~~~ 908 (1130)
..+.+.++|+||+.+|... ++. ++++... ....... ....++...|++ ++.+.++...+...+++. ..++.
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCc
Confidence 3688999999999887765 444 5555443 3322221 234788889999 688887777777777774 23332
Q ss_pred EEE-EEe--cCCCCeeEEEEccCCCeEEEEe---CCCcEEEEECCCCccc----ceeeEeccCCCCCCCeEEEEEcCCCc
Q 001184 909 VKT-KLK--GHQKHITGLAFSTNLNILVSSG---SDAQLIFWNTDTWEKR----KSIAIQLPAGKLPVGETRVQFHSDQV 978 (1130)
Q Consensus 909 ~~~-~l~--~h~~~V~~l~~s~dg~~L~s~s---~Dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~v~~~~~s~d~~ 978 (1130)
... .+. .-.+.|+++.+||||.+++... .++.|.+=-+...... ......... .....+..+.|.+++.
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~-~~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAP-PLLSDVTDVAWSDDST 178 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecc-cccCcceeeeecCCCE
Confidence 221 121 1122899999999999888766 3567777665532221 111111111 1125788999999999
Q ss_pred EEEEE
Q 001184 979 RLLVN 983 (1130)
Q Consensus 979 ~l~~~ 983 (1130)
+++..
T Consensus 179 L~V~~ 183 (253)
T PF10647_consen 179 LVVLG 183 (253)
T ss_pred EEEEe
Confidence 88874
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=2.7 Score=51.33 Aligned_cols=243 Identities=9% Similarity=0.020 Sum_probs=118.3
Q ss_pred ccEEEEEEcCCCCEEEEEeCC-----CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCC-----Cc
Q 001184 410 ISVSRVAWSPDGNFIGVAFTK-----HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD-----KL 479 (1130)
Q Consensus 410 ~~V~~v~~spdg~~las~~~d-----~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d-----~~ 479 (1130)
-.+..+.|||||++||.+... ..|++-|+.+|..+.. .+.+ .-..++|++|++. ++++...+ ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~---~~~~~~w~~D~~~-~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN---VEPSFVWANDSWT-FYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC---cceEEEEeeCCCE-EEEEEecCCCCCCCE
Confidence 357788999999999886432 3688999988764321 1222 1256999999986 34443322 35
Q ss_pred EEEEe-cCC--CeeeEecCCCcCEEEEeecccCCccEEEEEec---CCcEEEEEccC--CcceeeecCCCccEEEEEEec
Q 001184 480 IRVWD-LSG--RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV---DGKIKAWLYDN--VGSRVDYDAPGLWCTTMLYSA 551 (1130)
Q Consensus 480 v~iwd-~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~---dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~s~ 551 (1130)
|+.|+ .++ +-...+........ +......++.+++..+. ++.+.+++.+. ......+.........+. .
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~- 277 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-H- 277 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-e-
Confidence 77777 444 22333433333333 22222334555544433 35688888532 222222222222222222 2
Q ss_pred CCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecc-cCceeEEEEEcCCCCEEEEEeCCCcEEEE--eCCCCceeEEEec
Q 001184 552 DGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGF-RKKSAGVVQFDTTRNRILAAGEDNQIKFW--DMDNVNMLTSTEA 628 (1130)
Q Consensus 552 ~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vw--d~~~~~~~~~~~~ 628 (1130)
.+..+...+..+.....|...++........+..+ .+..+..+.+. .+..+++...+|.-+++ +..++ .+..+..
T Consensus 278 ~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~ 355 (686)
T PRK10115 278 YQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAF 355 (686)
T ss_pred CCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecC
Confidence 23444443322223455666666532222344444 33367777776 33455556666665554 44333 3333332
Q ss_pred cCCCCCcceEEEc--CCCC-EEEEEeC---CCcEEEEEcCCC
Q 001184 629 EGGLPSLPRLRFN--KEGN-LLVVTTA---DQGIKILANADG 664 (1130)
Q Consensus 629 ~~~~~~i~~v~~s--~~~~-~l~~~~~---dg~i~iw~~~~~ 664 (1130)
... ..+..+.++ +++. ++++.+. -+.+..+|..++
T Consensus 356 ~~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 356 DDP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred CCC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 111 112222333 3333 3433332 356777776654
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.17 Score=43.96 Aligned_cols=102 Identities=16% Similarity=0.171 Sum_probs=65.2
Q ss_pred EEEEEEec---CCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEE
Q 001184 350 VVSMDFHP---FHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1130)
Q Consensus 350 V~~v~fsp---dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 426 (1130)
|+++++.+ ||..-|++|+.|..|+||+=+ +.+.. + ...+.|++++-... ..++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~E-------------------i-~e~~~v~~L~~~~~-~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAE-------------------I-TETDKVTSLCSLGG-GRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEE-------------------E-ecccceEEEEEcCC-CEEEE
Confidence 56666554 555668999999999999854 22221 1 23457888887776 56899
Q ss_pred EeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEec---CCCceEEEEEcCCCcEE
Q 001184 427 AFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY---PNKQLCIVTCGDDKLIR 481 (1130)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~---d~~~l~l~s~s~d~~v~ 481 (1130)
+..+|+|-+|+-... +- ..+ .+..+.++++.. ||.. -|++|-.+|.|-
T Consensus 59 ~l~NGTVGvY~~~~R--lW---RiK-SK~~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 59 ALANGTVGVYDRSQR--LW---RIK-SKNQVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EecCCEEEEEeCcce--ee---eec-cCCCeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 999999999986331 12 122 222366665543 3433 578887777664
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0077 Score=41.24 Aligned_cols=34 Identities=32% Similarity=0.542 Sum_probs=31.1
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYT 437 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd 437 (1130)
.+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 7 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 7 TLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4567888999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.22 Score=52.28 Aligned_cols=150 Identities=15% Similarity=0.116 Sum_probs=89.0
Q ss_pred CeEEEEEeCCCCcEEEEEe-CCCcEEEEEeecCeEEEE-EecCCCCeeEEEEccCCCeEEEEeCCCcEEEEE-CCCCccc
Q 001184 876 ASTFLAFHPQDNNIIAIGM-EDSTIQIYNVRVDEVKTK-LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN-TDTWEKR 952 (1130)
Q Consensus 876 ~i~~l~~sp~~~~~lasg~-~dg~v~iwd~~~~~~~~~-l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd-~~~~~~~ 952 (1130)
.+.+.++++ ++..+|... .++.-.+|-...+..... +.+ ..++...|++++...+....+...+++. ...++.
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~- 100 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG- 100 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcc-
Confidence 688999999 565554443 333344444443333333 233 3688899999988777777677777774 223222
Q ss_pred ceeeEeccCCCCCCCeEEEEEcCCCcEEEEE----cCCcEEEEECC---Cc--eee-eeeecCCCCCCCeEEEEECCCCC
Q 001184 953 KSIAIQLPAGKLPVGETRVQFHSDQVRLLVN----HETQLAIYDGS---KM--ECI-RQWVPQDVLSSPISSAAYSCNSQ 1022 (1130)
Q Consensus 953 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~----~d~~i~v~d~~---~~--~~~-~~~~~~~~~~~~v~~v~~s~dg~ 1022 (1130)
.......+... ..|..+.+||||..++.- .++.+.+--+. .+ ..+ ............++.++|.+++.
T Consensus 101 ~~~~v~~~~~~--~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 101 EPVEVDWPGLR--GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST 178 (253)
T ss_pred eeEEecccccC--CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence 12222222111 279999999999999973 26777766543 23 111 11111111246889999999999
Q ss_pred EEEEEeCCC
Q 001184 1023 LIYATFTDG 1031 (1130)
Q Consensus 1023 ~l~t~~~Dg 1031 (1130)
+++.+...+
T Consensus 179 L~V~~~~~~ 187 (253)
T PF10647_consen 179 LVVLGRSAG 187 (253)
T ss_pred EEEEeCCCC
Confidence 888777543
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.34 E-value=2.5 Score=47.40 Aligned_cols=277 Identities=12% Similarity=0.154 Sum_probs=144.4
Q ss_pred cCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC-----CCCEEEEEeCCC
Q 001184 357 PFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-----DGNFIGVAFTKH 431 (1130)
Q Consensus 357 pdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-----dg~~las~~~d~ 431 (1130)
++++..+++|+..|.++||+...++.... .+ ..-..-+.+|..++.-+ +...||+- .-.
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~-~l--------------llE~~l~~PILqv~~G~F~s~~~~~~LaVL-hP~ 97 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPE-DL--------------LLETQLKDPILQVECGKFVSGSEDLQLAVL-HPR 97 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCc-cE--------------EEEEecCCcEEEEEeccccCCCCcceEEEe-cCC
Confidence 34444689999999999999965442211 00 01122345666666532 33466664 556
Q ss_pred eEEEEEecCCccc------eeeeeeecCCCC--eeEEEEec----CCCceEEEEEcCCCcEEEEecCCCeeeE-ecC--C
Q 001184 432 LIHLYTYQGSNDL------CQSLEIDAHVGG--VNDLAFSY----PNKQLCIVTCGDDKLIRVWDLSGRKLFQ-FEG--H 496 (1130)
Q Consensus 432 ~i~vwd~~~~~~~------~~~~~~~~h~~~--V~~i~~s~----d~~~l~l~s~s~d~~v~iwd~~~~~~~~-~~~--h 496 (1130)
.+.||.+...... .....+..|.-. ...++.-| .|+. .++.=+-||.+.+++.+.-.... +.+ .
T Consensus 98 kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~-~IcVQS~DG~L~~feqe~~~f~~~lp~~ll 176 (418)
T PF14727_consen 98 KLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRD-FICVQSMDGSLSFFEQESFAFSRFLPDFLL 176 (418)
T ss_pred EEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCce-EEEEEecCceEEEEeCCcEEEEEEcCCCCC
Confidence 7889988322111 111122233322 22333322 2233 78889999999999955544332 222 3
Q ss_pred CcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcce-----------------------eeecCCCcc---EEEEEEe
Q 001184 497 EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR-----------------------VDYDAPGLW---CTTMLYS 550 (1130)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-----------------------~~~~~~~~~---v~~~~~s 550 (1130)
.+|+ ++.+.. +.+++++.+..+..|........ +.+.. +.. +..+.++
T Consensus 177 PgPl---~Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~~l~i~v~~~~ 250 (418)
T PF14727_consen 177 PGPL---CYCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQALDIQVVRFS 250 (418)
T ss_pred CcCe---EEeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEEC-CceeEEEEEEEcC
Confidence 3443 444444 46888888888888865321000 01111 112 3333343
Q ss_pred cCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcC----CC---CEEEEEeCCCcEEEEeCCCCcee
Q 001184 551 ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT----TR---NRILAAGEDNQIKFWDMDNVNML 623 (1130)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~----~~---~~l~~~~~dg~i~vwd~~~~~~~ 623 (1130)
.....+++-+ ...+.+.+. +|.+....+- ...+.....+.. ++ ..++.++.++.+.||.-. +++
T Consensus 251 ~~~~~IvvLg-----er~Lf~l~~-~G~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~--~L~ 321 (418)
T PF14727_consen 251 SSESDIVVLG-----ERSLFCLKD-NGSLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT--TLV 321 (418)
T ss_pred CCCceEEEEe-----cceEEEEcC-CCeEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC--eEE
Confidence 3444455544 667877775 4544333222 221222222221 22 258889999999998643 333
Q ss_pred EEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 001184 624 TSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGL 665 (1130)
Q Consensus 624 ~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 665 (1130)
.........-.+....|..-...+++-+.+|.+.+--+.+..
T Consensus 322 WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 322 WSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred EecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence 333322221122223333345578888999999998776653
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.75 Score=45.22 Aligned_cols=98 Identities=11% Similarity=0.101 Sum_probs=61.8
Q ss_pred EEEEeccCCeEEEeee-CCeEEeeecCC--CCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEE
Q 001184 772 RLLYTNSGIGILALWS-NGVQKLWKWNR--TEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYV 848 (1130)
Q Consensus 772 ~l~~s~~g~~l~~~~~-dg~i~iw~~~~--~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l 848 (1130)
.++|+.+.+.+....+ +-.|.-||.+. +..+- .-.++++...+..... ..-.+++..+|.+.
T Consensus 162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~sn--------r~~i~dlrk~~~~e~~-------~PDGm~ID~eG~L~ 226 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSN--------RKVIFDLRKSQPFESL-------EPDGMTIDTEGNLY 226 (310)
T ss_pred cccccccCcEEEEEccCceEEeeeecCCCcccccC--------cceeEEeccCCCcCCC-------CCCcceEccCCcEE
Confidence 4566666666655544 55666676432 22111 1123444433222211 12345667788876
Q ss_pred EEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeC
Q 001184 849 MSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHP 884 (1130)
Q Consensus 849 a~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp 884 (1130)
++.- .++|.-.|..+|+.+.++..+...|+++||--
T Consensus 227 Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 227 VATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred EEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 6665 78999999999999999999999999999954
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.23 Score=58.77 Aligned_cols=235 Identities=13% Similarity=0.143 Sum_probs=130.3
Q ss_pred cCCCEEEEEe-C------CeEEEEECCCceeEEEEeC-CCCCeEEEEEeCCCCcEEEEEeCC-C-----cEEEEEeecCe
Q 001184 843 KNDSYVMSAG-G------GKVSLFNMMNFKVMTTFMS-PPPASTFLAFHPQDNNIIAIGMED-S-----TIQIYNVRVDE 908 (1130)
Q Consensus 843 ~dg~~la~~~-d------g~i~iwd~~~~~~~~~~~~-~~~~i~~l~~sp~~~~~lasg~~d-g-----~v~iwd~~~~~ 908 (1130)
..+.++++|+ . ..+..||..+++-.....- ......++++. ++.+.++|+.| | ++..||..+++
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 3455666665 3 3488999887744333222 22224445555 46888999999 3 57788877654
Q ss_pred EEE--EEecCCCCeeEEEEccCCCeEEEEeCCCc-----EEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEE
Q 001184 909 VKT--KLKGHQKHITGLAFSTNLNILVSSGSDAQ-----LIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLL 981 (1130)
Q Consensus 909 ~~~--~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 981 (1130)
=.. .+.......... .-+|...|+||.||. +..||..+.+......... ..-..-...-+|.+.+
T Consensus 361 W~~~a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~------~r~~~gv~~~~g~iYi 432 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT------RRSGHGVAVLGGKLYI 432 (571)
T ss_pred eeccCCccCccccceeE--EECCEEEEEeccccccccccEEEecCCCCcccccCCCCc------ceeeeEEEEECCEEEE
Confidence 222 222111111111 226888889999864 7778877754322221111 1111222233555555
Q ss_pred E-EcC------CcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCc-----EEEEeCCCcccccccCC
Q 001184 982 V-NHE------TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGS-----IGVFDADSLRLRCRIAP 1049 (1130)
Q Consensus 982 ~-~~d------~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~-----i~vwd~~~~~~~~~~~~ 1049 (1130)
+ |.+ ..+..||..+......-..... .... .++ .-++.+.+.|+.|+. |..||..+.+....-..
T Consensus 433 ~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~-R~~~-g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m 509 (571)
T KOG4441|consen 433 IGGGDGSSNCLNSVECYDPETNTWTLIAPMNTR-RSGF-GVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM 509 (571)
T ss_pred EcCcCCCccccceEEEEcCCCCceeecCCcccc-cccc-eEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccC
Confidence 5 322 4588999887665443222210 1111 222 336888888887763 78899888775433211
Q ss_pred CcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCC-----cEEEEeCCCCccCCccccc
Q 001184 1050 SAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDG-----SVKVIEPSETERKWGVAVP 1104 (1130)
Q Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg-----~v~vW~~~~~~~~w~~~~p 1104 (1130)
.. ..+...+.+. ++.+.++|+.|| +|..||..+.+ |....+
T Consensus 510 ~~--------~rs~~g~~~~----~~~ly~vGG~~~~~~l~~ve~ydp~~d~--W~~~~~ 555 (571)
T KOG4441|consen 510 TS--------PRSAVGVVVL----GGKLYAVGGFDGNNNLNTVECYDPETDT--WTEVTE 555 (571)
T ss_pred cc--------ccccccEEEE----CCEEEEEecccCccccceeEEcCCCCCc--eeeCCC
Confidence 11 0111111122 578999999988 58889888877 987777
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.09 E-value=1.1 Score=49.15 Aligned_cols=141 Identities=12% Similarity=0.095 Sum_probs=70.9
Q ss_pred CccEEEEEe-cCCcEEEEEccCCcc----eeeecC-------CCccEEEEEEecCCCeEEEeeec--CCCCcEEEEeeCC
Q 001184 510 NIHFIFSTA-VDGKIKAWLYDNVGS----RVDYDA-------PGLWCTTMLYSADGSRLFSCGTS--KEGDSHLVEWNES 575 (1130)
Q Consensus 510 ~~~~l~s~s-~dg~i~vwd~~~~~~----~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~~--~~~~~~i~~wd~~ 575 (1130)
+.++|+..+ ..++|.+.|+.+.-. ...++. .-.....+-.-|+|+.++++-.+ +++.|-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 335666666 567899998874221 112221 00123445566899888876533 3556789999988
Q ss_pred CCceeEEEecccCc--eeEEEEEcCCCCEEEEEe--------------------CCCcEEEEeCCCCceeEEEeccCCCC
Q 001184 576 EGALKRTYIGFRKK--SAGVVQFDTTRNRILAAG--------------------EDNQIKFWDMDNVNMLTSTEAEGGLP 633 (1130)
Q Consensus 576 ~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~--------------------~dg~i~vwd~~~~~~~~~~~~~~~~~ 633 (1130)
+.+........... .-..+.+.|..+.+++.. ...++.+||+.+.+.++++.......
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 88888777654332 233477888888888864 23579999999999999998764322
Q ss_pred CcceEEE--cCCCCEEEEE
Q 001184 634 SLPRLRF--NKEGNLLVVT 650 (1130)
Q Consensus 634 ~i~~v~~--s~~~~~l~~~ 650 (1130)
....+.| .|+..+=+++
T Consensus 246 ~pLEvRflH~P~~~~gFvg 264 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVG 264 (461)
T ss_dssp EEEEEEE-SSTT--EEEEE
T ss_pred ceEEEEecCCCCccceEEE
Confidence 2344555 4445544444
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.00 E-value=1.2 Score=54.30 Aligned_cols=245 Identities=12% Similarity=0.048 Sum_probs=123.5
Q ss_pred CCCEEEEEeCCeEEEEECCCceeEEEEeCCCCC--------eEEEEEeC---------------CCCcEEEEEeCCCcEE
Q 001184 844 NDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPA--------STFLAFHP---------------QDNNIIAIGMEDSTIQ 900 (1130)
Q Consensus 844 dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~--------i~~l~~sp---------------~~~~~lasg~~dg~v~ 900 (1130)
++.+.++..++.|.-.|..+|+.+-++...... ...+++.. .++..|+.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 444444444788999999999888777632211 12233321 0234777888999999
Q ss_pred EEEeecCeEEEEEecCCCCee-------------EEEEcc--CCCeEEEEeC----------CCcEEEEECCCCccccee
Q 001184 901 IYNVRVDEVKTKLKGHQKHIT-------------GLAFST--NLNILVSSGS----------DAQLIFWNTDTWEKRKSI 955 (1130)
Q Consensus 901 iwd~~~~~~~~~l~~h~~~V~-------------~l~~s~--dg~~L~s~s~----------Dg~i~vwd~~~~~~~~~~ 955 (1130)
-.|.++|+.+..+.. .+.|. .+.-+| .+..++.++. +|.|+-+|..+++.+=..
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998876532 12110 011111 1345665543 688999999998865333
Q ss_pred eEeccCCCCCCCeEEEEEcCCCcEEEEEcCC--cEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcE
Q 001184 956 AIQLPAGKLPVGETRVQFHSDQVRLLVNHET--QLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSI 1033 (1130)
Q Consensus 956 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~--~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i 1033 (1130)
....+... . .-+++.....+..+ ...-+|.+.+....-. . .+ +..+....+........+.|
T Consensus 353 ~~g~p~~~---~-----~~~~g~~~~~gg~n~W~~~s~D~~~glvy~pt--G----n~--~pd~~g~~r~~~~n~y~~sl 416 (764)
T TIGR03074 353 DPGNPDPT---A-----PPAPGETYTRNTPNSWSVASYDEKLGLVYLPM--G----NQ--TPDQWGGDRTPADEKYSSSL 416 (764)
T ss_pred ecCCCCcc---c-----CCCCCCEeccCCCCccCceEEcCCCCeEEEeC--C----Cc--cccccCCccccCcccccceE
Confidence 22111110 0 00122222111111 2334444444332211 0 00 01111111100011124557
Q ss_pred EEEeCCCcccccccCCCcc-cccCCCCCceeeeEEEEEcCCCCC---EEEEEeCCCcEEEEeCCCCccCCccc-ccCCCC
Q 001184 1034 GVFDADSLRLRCRIAPSAY-MSQASPNSQTVFPLVVTSHPQEPN---QLAVGLTDGSVKVIEPSETERKWGVA-VPVDNG 1108 (1130)
Q Consensus 1034 ~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~l~s~~~Dg~v~vW~~~~~~~~w~~~-~p~~~~ 1108 (1130)
.-.|++||+..-.++.... .=..+.....+ .+.+. ..++. .++.++.+|.+.+.|..+++..|.+. .|++.|
T Consensus 417 vALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~-L~d~~--~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e~~vp~~ 493 (764)
T TIGR03074 417 VALDATTGKERWVFQTVHHDLWDMDVPAQPS-LVDLP--DADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEEVPVPQG 493 (764)
T ss_pred EEEeCCCCceEEEecccCCccccccccCCce-EEeee--cCCCcEeeEEEEECCCCEEEEEECCCCCEEeeceeecCCcc
Confidence 7788888887765543110 00000011111 11121 11342 89999999999999999999999753 355544
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.99 E-value=5.6 Score=48.23 Aligned_cols=108 Identities=16% Similarity=0.066 Sum_probs=63.1
Q ss_pred EEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEE--EeCCCccccccc
Q 001184 970 RVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGV--FDADSLRLRCRI 1047 (1130)
Q Consensus 970 ~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~v--wd~~~~~~~~~~ 1047 (1130)
-.+..|-..+++++-...+++||+...+.++...... ....|+.+++- +..+++|...-.+.. |+-+..+++.-.
T Consensus 938 v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~-~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~n~l~~fa 1014 (1205)
T KOG1898|consen 938 VGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKF-IPNRISSIQTY--GARIVVGDIQESVHFVRYRREDNQLIVFA 1014 (1205)
T ss_pred ceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhcc-CceEEEEEeec--ceEEEEeeccceEEEEEEecCCCeEEEEe
Confidence 3556677778888888899999998777766544332 24567777764 567777775555444 454444443222
Q ss_pred CCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 001184 1048 APSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEP 1092 (1130)
Q Consensus 1048 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~ 1092 (1130)
... -..+++++..- |.+.++.|..=|.+.+-++
T Consensus 1015 dD~----------~pR~Vt~~~~l--D~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1015 DDP----------VPRHVTALELL--DYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred CCC----------ccceeeEEEEe--cCCceeeccccCcEEEEEC
Confidence 211 11223333322 3457888877776644443
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=95.93 E-value=3 Score=44.62 Aligned_cols=153 Identities=17% Similarity=0.213 Sum_probs=81.2
Q ss_pred CCCceeEEEEecCCCEEEEEeCCeE-EEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEee-cCeE
Q 001184 832 AEDVVPCVALSKNDSYVMSAGGGKV-SLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR-VDEV 909 (1130)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~dg~i-~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~-~~~~ 909 (1130)
....+..+..++||++++++..|.+ .-||.-...-...-......|..|.|.| ++.+.+.+ ..|.|++=+.. ..+.
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDDGET 220 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEEe-CCcEEEEccCCCCccc
Confidence 4567888899999999999997764 5677543212222223467899999999 67766644 88888887621 1121
Q ss_pred EEE----EecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcC
Q 001184 910 KTK----LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHE 985 (1130)
Q Consensus 910 ~~~----l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d 985 (1130)
-.. +..-.-.+..++|.+++...++++ .|.+ +...+.++. -.........+.....+.|.++.+-++.+.+
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGkt---W~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~ 295 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKT---WQKDRVGENVPSNLYRIVFVNPDKGFVLGQD 295 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS----EE-GGGTTSSS---EEEEEETTEEEEE-ST
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCcc---ceECccccCCCCceEEEEEcCCCceEEECCC
Confidence 111 111223478999999877777555 4444 344554432 1111111223467889999888888888988
Q ss_pred CcEEEE
Q 001184 986 TQLAIY 991 (1130)
Q Consensus 986 ~~i~v~ 991 (1130)
|.+.-|
T Consensus 296 G~ll~~ 301 (302)
T PF14870_consen 296 GVLLRY 301 (302)
T ss_dssp TEEEEE
T ss_pred cEEEEe
Confidence 877655
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.35 Score=57.51 Aligned_cols=187 Identities=14% Similarity=0.090 Sum_probs=97.0
Q ss_pred cCCCEEEEEe-C------CeEEEEECCCceeEEEEeCCCCCe-EEEEEeCCCCcEEEEEeCCC-----cEEEEEeecCeE
Q 001184 843 KNDSYVMSAG-G------GKVSLFNMMNFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGMEDS-----TIQIYNVRVDEV 909 (1130)
Q Consensus 843 ~dg~~la~~~-d------g~i~iwd~~~~~~~~~~~~~~~~i-~~l~~sp~~~~~lasg~~dg-----~v~iwd~~~~~~ 909 (1130)
-++...+.|+ + ..+..||..+..-...-.-..... .+++. - ++++.+.|+.++ ++..||..+.+=
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~-~-~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV-I-DDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE-E-CCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 3667777766 3 247788987764322111111111 12222 2 678888888764 488899876532
Q ss_pred --EEEEecCCCCeeEEEEccCCCeEEEEeCCC-----------------------cEEEEECCCCcccceeeEeccCCCC
Q 001184 910 --KTKLKGHQKHITGLAFSTNLNILVSSGSDA-----------------------QLIFWNTDTWEKRKSIAIQLPAGKL 964 (1130)
Q Consensus 910 --~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg-----------------------~i~vwd~~~~~~~~~~~~~~~~~~~ 964 (1130)
+..+.........++ -+|+..+.||.++ .+..||..+.+.......... .
T Consensus 380 ~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~--r- 454 (557)
T PHA02713 380 KMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG--T- 454 (557)
T ss_pred EECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcc--c-
Confidence 222221111111222 3677777777653 477788777543222211111 1
Q ss_pred CCCeEEEEEcCCCcEEEEE-cC------CcEEEEECCC-cee--eeeeecCCCCCCCeEEEEECCCCCEEEEEeCCC--c
Q 001184 965 PVGETRVQFHSDQVRLLVN-HE------TQLAIYDGSK-MEC--IRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG--S 1032 (1130)
Q Consensus 965 ~~~v~~~~~s~d~~~l~~~-~d------~~i~v~d~~~-~~~--~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg--~ 1032 (1130)
.-.+++ .-+|+..++| .+ ..+..||..+ .+- +..+... ......+. -+|++.++|+.|| .
T Consensus 455 --~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~---r~~~~~~~--~~~~iyv~Gg~~~~~~ 526 (557)
T PHA02713 455 --IRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR---LSALHTIL--HDNTIMMLHCYESYML 526 (557)
T ss_pred --ccCcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc---cccceeEE--ECCEEEEEeeecceee
Confidence 111222 2334444443 22 2467899886 333 2222221 22222222 2788999999888 7
Q ss_pred EEEEeCCCcccc
Q 001184 1033 IGVFDADSLRLR 1044 (1130)
Q Consensus 1033 i~vwd~~~~~~~ 1044 (1130)
+..||..+.+.-
T Consensus 527 ~e~yd~~~~~W~ 538 (557)
T PHA02713 527 QDTFNVYTYEWN 538 (557)
T ss_pred hhhcCccccccc
Confidence 888888887754
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.18 Score=55.40 Aligned_cols=139 Identities=9% Similarity=0.081 Sum_probs=89.2
Q ss_pred EEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCe--------EEEeeecCCCCcEEEEeeCCCCc--eeEE
Q 001184 513 FIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSR--------LFSCGTSKEGDSHLVEWNESEGA--LKRT 582 (1130)
Q Consensus 513 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~--------l~~~~~~~~~~~~i~~wd~~~~~--~~~~ 582 (1130)
++.++.....++-.|++.++.+-+...+.. |.-+.+.|+++. |+-.+ +..|.-||.+-.. .+..
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs-----~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLS-----DNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeec-----CCceEEecccccCcceeee
Confidence 445556667788888888888877777666 667777776542 22222 7789999986322 2222
Q ss_pred Eeccc---CceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEE
Q 001184 583 YIGFR---KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659 (1130)
Q Consensus 583 ~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw 659 (1130)
..++. .....|.+-.. ..+|++|+.+|.|++||.-..+....+++-+. +|..+..+.+|++++..+ +..+.+.
T Consensus 422 ~q~kqy~~k~nFsc~aTT~-sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~--~I~hVdvtadGKwil~Tc-~tyLlLi 497 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTE-SGYIVVGSLKGDIRLYDRIGRRAKTALPGLGD--AIKHVDVTADGKWILATC-KTYLLLI 497 (644)
T ss_pred eeccccccccccceeeecC-CceEEEeecCCcEEeehhhhhhhhhcccccCC--ceeeEEeeccCcEEEEec-ccEEEEE
Confidence 22221 11344444443 35899999999999999733333333444444 899999999999887665 4566666
Q ss_pred Ec
Q 001184 660 AN 661 (1130)
Q Consensus 660 ~~ 661 (1130)
++
T Consensus 498 ~t 499 (644)
T KOG2395|consen 498 DT 499 (644)
T ss_pred EE
Confidence 64
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.87 E-value=2.3 Score=43.89 Aligned_cols=205 Identities=13% Similarity=0.131 Sum_probs=118.6
Q ss_pred eeEEEEeCC-CCCeEEEEEeCCCCcEEEEEeCCC--cEEEEEeecCeEEEEEecCC-CCeeEEEEccCCCeEEEE-eCCC
Q 001184 865 KVMTTFMSP-PPASTFLAFHPQDNNIIAIGMEDS--TIQIYNVRVDEVKTKLKGHQ-KHITGLAFSTNLNILVSS-GSDA 939 (1130)
Q Consensus 865 ~~~~~~~~~-~~~i~~l~~sp~~~~~lasg~~dg--~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~dg~~L~s~-s~Dg 939 (1130)
+.+.++... ..-...+.|.. ++.++-+.+.-| .|+.+|+.+++......-.. ----.++... ..|.-- =.++
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~ 110 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEG 110 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSS
T ss_pred EEEEECCCCCcccCccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCC
Confidence 344555422 23356788866 778888877766 69999999998776543211 1112333332 233333 3478
Q ss_pred cEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-cCCcEEEEECCCceeeeeeecCCC--CCCCeEEEE
Q 001184 940 QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKMECIRQWVPQDV--LSSPISSAA 1016 (1130)
Q Consensus 940 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~--~~~~v~~v~ 1016 (1130)
...+||..+.+........ ..-..++ .|+..|+.+ ....++.+|..+.+..+.+..... .-..++.+.
T Consensus 111 ~~f~yd~~tl~~~~~~~y~-------~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE 181 (264)
T PF05096_consen 111 TGFVYDPNTLKKIGTFPYP-------GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELE 181 (264)
T ss_dssp EEEEEETTTTEEEEEEE-S-------SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEE
T ss_pred eEEEEccccceEEEEEecC-------CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEE
Confidence 8999999986654443221 2334444 566666664 578899999998887776644321 123456677
Q ss_pred ECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCC----CCceeeeEEEEEcCCCCCEEEEEe
Q 001184 1017 YSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASP----NSQTVFPLVVTSHPQEPNQLAVGL 1082 (1130)
Q Consensus 1017 ~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~s~~ 1082 (1130)
|- +|.+.|=.=....|..-|..+|+....+......+.... +....--.-++|.|..+.+++||=
T Consensus 182 ~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 182 YI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 75 676666555677889999999999887765554332100 011222346899998777777773
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.34 Score=42.16 Aligned_cols=104 Identities=9% Similarity=0.081 Sum_probs=61.9
Q ss_pred EEEEeeccc-CC-ccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCC
Q 001184 500 VYSVCPHQK-EN-IHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577 (1130)
Q Consensus 500 v~~~~~~~~-~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1130)
|+++++..- .+ .+.|+.|+.|..|++|+-+ ....++. ....|.+++-...++ ++.+.. +|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~~~-F~Y~l~----NGTVGvY~~~-- 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGGGR-FAYALA----NGTVGVYDRS-- 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCCCE-EEEEec----CCEEEEEeCc--
Confidence 566665432 22 2689999999999999644 3333333 344577777776654 555554 8999999742
Q ss_pred ceeEEEecccCceeEEEEEcCCC---CEEEEEeCCCcEEE
Q 001184 578 ALKRTYIGFRKKSAGVVQFDTTR---NRILAAGEDNQIKF 614 (1130)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~v 614 (1130)
..+...+..+. .+....+..++ .-|++|-.+|.|-+
T Consensus 72 ~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 72 QRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 22223332222 33333343333 36888888887743
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=1.9 Score=47.59 Aligned_cols=157 Identities=10% Similarity=0.051 Sum_probs=90.4
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEE-ecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCccc
Q 001184 874 PPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKL-KGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKR 952 (1130)
Q Consensus 874 ~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~ 952 (1130)
...+..+.+.| ++.+++++ ..|.+..-.-..++.-... ..-...++++.+.++++.++. +..|.+++=..+.++.=
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECC-CCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCcc
Confidence 45688899999 77776655 4565543111122222222 233457899999999887665 45676543223332210
Q ss_pred ceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCc
Q 001184 953 KSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGS 1032 (1130)
Q Consensus 953 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~ 1032 (1130)
.. ...+.......+..+.+.+++..++++.++.+. .....|+.-.............+.+.|..+++.+++| ..|.
T Consensus 249 ~~--~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~G~ 324 (334)
T PRK13684 249 SK--PIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QRGV 324 (334)
T ss_pred cc--ccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-CCce
Confidence 10 111111112356788999999988888877665 3445555544433211123468888888777776655 5888
Q ss_pred EEEEe
Q 001184 1033 IGVFD 1037 (1130)
Q Consensus 1033 i~vwd 1037 (1130)
|..|+
T Consensus 325 il~~~ 329 (334)
T PRK13684 325 LLRYV 329 (334)
T ss_pred EEEec
Confidence 88876
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=95.80 E-value=3 Score=45.90 Aligned_cols=239 Identities=14% Similarity=0.131 Sum_probs=116.5
Q ss_pred ceeEEEEecCCCEEEEEeCCeEEEEECCCcee---EEEEe----CCCCCeEEEEEeCC---CCcEEEEEeCC--------
Q 001184 835 VVPCVALSKNDSYVMSAGGGKVSLFNMMNFKV---MTTFM----SPPPASTFLAFHPQ---DNNIIAIGMED-------- 896 (1130)
Q Consensus 835 ~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~---~~~~~----~~~~~i~~l~~sp~---~~~~lasg~~d-------- 896 (1130)
..+.|+|.|||+++++-..|.|++++ ..+.. +..+. ........++++|+ ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 35789999999998876799999999 44433 22221 23345789999993 24444444421
Q ss_pred CcEEEEEeecC-------eEE-EEEec---CCCCeeEEEEccCCCeEEEEeCCCc-------------EEEEECCCCccc
Q 001184 897 STIQIYNVRVD-------EVK-TKLKG---HQKHITGLAFSTNLNILVSSGSDAQ-------------LIFWNTDTWEKR 952 (1130)
Q Consensus 897 g~v~iwd~~~~-------~~~-~~l~~---h~~~V~~l~~s~dg~~L~s~s~Dg~-------------i~vwd~~~~~~~ 952 (1130)
..|.-|....+ +.+ ..+.. ....-..|+|.|||.+.++.+..+. |.-.+.+.. ..
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~-~p 160 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGS-IP 160 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSS-B-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCc-CC
Confidence 23444554433 111 22222 1223467999999987777765432 222222110 00
Q ss_pred ceeeEeccCCCCC-------CCeEEEEEcCC-CcEEEE--EcCCcEEEEECCCcee------------------------
Q 001184 953 KSIAIQLPAGKLP-------VGETRVQFHSD-QVRLLV--NHETQLAIYDGSKMEC------------------------ 998 (1130)
Q Consensus 953 ~~~~~~~~~~~~~-------~~v~~~~~s~d-~~~l~~--~~d~~i~v~d~~~~~~------------------------ 998 (1130)
...+..-...... -....++|+|. |.+.++ +.+..=.|..+..|.-
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP 240 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence 0000000000000 23467899999 777776 3333222322222211
Q ss_pred -----eeeeecCCCCCCCeEEEEECC-------CCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeE
Q 001184 999 -----IRQWVPQDVLSSPISSAAYSC-------NSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPL 1066 (1130)
Q Consensus 999 -----~~~~~~~~~~~~~v~~v~~s~-------dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1130)
+..+. +...+..+.|-. .|.++++.-..+.|....++.+........ +. ......++
T Consensus 241 ~~~~P~~~~~----~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~-----~~~~~r~~ 309 (331)
T PF07995_consen 241 GFVPPVFAYP----PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEE--FL-----GGFGGRPR 309 (331)
T ss_dssp TS---SEEET----TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE--EC-----TTSSS-EE
T ss_pred CcCccceeec----CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEE--cc-----ccCCCCce
Confidence 01111 124566666653 455666666667777777764432211110 00 11222466
Q ss_pred EEEEcCCCCCEEEEEeCCCcE
Q 001184 1067 VVTSHPQEPNQLAVGLTDGSV 1087 (1130)
Q Consensus 1067 ~~~~~~~~~~~l~s~~~Dg~v 1087 (1130)
.+.+.| |+.++++.+.+|.|
T Consensus 310 ~v~~~p-DG~Lyv~~d~~G~i 329 (331)
T PF07995_consen 310 DVAQGP-DGALYVSDDSDGKI 329 (331)
T ss_dssp EEEEET-TSEEEEEE-TTTTE
T ss_pred EEEEcC-CCeEEEEECCCCeE
Confidence 788888 58888888888876
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.80 E-value=1.5 Score=43.24 Aligned_cols=137 Identities=10% Similarity=0.034 Sum_probs=78.1
Q ss_pred CCCeeEEEEecCCCceEEEE-EcCC--------CcEEEEecCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEE
Q 001184 454 VGGVNDLAFSYPNKQLCIVT-CGDD--------KLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIK 524 (1130)
Q Consensus 454 ~~~V~~i~~s~d~~~l~l~s-~s~d--------~~v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~ 524 (1130)
..+.++-..+|+|+ +.+- .+.. |.++.|-..++ +..+...-+--+.++|.. ....+-++-+.+-.|.
T Consensus 108 knR~NDgkvdP~Gr--yy~GtMad~~~~le~~~g~Ly~~~~~h~-v~~i~~~v~IsNgl~Wd~-d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGR--YYGGTMADFGDDLEPIGGELYSWLAGHQ-VELIWNCVGISNGLAWDS-DAKKFYYIDSLNYEVD 183 (310)
T ss_pred hcccccCccCCCCc--eeeeeeccccccccccccEEEEeccCCC-ceeeehhccCCccccccc-cCcEEEEEccCceEEe
Confidence 34566777889999 4322 2221 22233322211 111112222334566652 2224455667778888
Q ss_pred EEEccCC-------cceeeecC----CCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEE
Q 001184 525 AWLYDNV-------GSRVDYDA----PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGV 593 (1130)
Q Consensus 525 vwd~~~~-------~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~ 593 (1130)
-||.+-. ..+..+.. .....-.+++..+|++.+++-. .++|...|..+|+.+..+.-... .+++
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~V~~~dp~tGK~L~eiklPt~-qits 258 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGTVQKVDPTTGKILLEIKLPTP-QITS 258 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcEEEEECCCCCcEEEEEEcCCC-ceEE
Confidence 8884422 12222221 1112345666778888777764 78999999999999999887655 7888
Q ss_pred EEEcCC
Q 001184 594 VQFDTT 599 (1130)
Q Consensus 594 ~~~~~~ 599 (1130)
+||.-.
T Consensus 259 ccFgGk 264 (310)
T KOG4499|consen 259 CCFGGK 264 (310)
T ss_pred EEecCC
Confidence 888643
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=7.3 Score=47.70 Aligned_cols=246 Identities=10% Similarity=0.045 Sum_probs=115.0
Q ss_pred cceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCE
Q 001184 768 SKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSY 847 (1130)
Q Consensus 768 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~ 847 (1130)
-.+..+.++|||++|+.+.+.+--.-++ +.+.++.+|..+...+. ..-..++|++|++.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~-----------------l~v~d~~tg~~l~~~i~----~~~~~~~w~~D~~~ 185 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYG-----------------IRFRNLETGNWYPELLD----NVEPSFVWANDSWT 185 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEE-----------------EEEEECCCCCCCCcccc----CcceEEEEeeCCCE
Confidence 3466788899999888775532211111 12334444543222121 11145899999987
Q ss_pred EEEEe-C------CeEEEEECCCc--eeEEEEeCCCCCeE-EEEEeCCCCcEEEEEeC---CCcEEEEEee--cCeEEEE
Q 001184 848 VMSAG-G------GKVSLFNMMNF--KVMTTFMSPPPAST-FLAFHPQDNNIIAIGME---DSTIQIYNVR--VDEVKTK 912 (1130)
Q Consensus 848 la~~~-d------g~i~iwd~~~~--~~~~~~~~~~~~i~-~l~~sp~~~~~lasg~~---dg~v~iwd~~--~~~~~~~ 912 (1130)
|+... + ..|+.+++.++ +....+........ .+..+. ++++++..+. ++.+.+|+.. +++....
T Consensus 186 ~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~ 264 (686)
T PRK10115 186 FYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTT-SKHYVVIHLASATTSEVLLLDAELADAEPFVF 264 (686)
T ss_pred EEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcC-CCCEEEEEEECCccccEEEEECcCCCCCceEE
Confidence 76654 2 25888899887 44444543333333 333343 5555544443 3468888843 3432222
Q ss_pred EecCCCCeeEEEEccCCCeEEEEeCC-CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCc--EE
Q 001184 913 LKGHQKHITGLAFSTNLNILVSSGSD-AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQ--LA 989 (1130)
Q Consensus 913 l~~h~~~V~~l~~s~dg~~L~s~s~D-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~--i~ 989 (1130)
+..-.+....+. +..+.+++....+ ...+|..+.-.... ....-.+ ......+..+.+..+.-.+....++. +.
T Consensus 265 ~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~-~~~~l~~-~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~ 341 (686)
T PRK10115 265 LPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQ-QWEELIP-PRENIMLEGFTLFTDWLVVEERQRGLTSLR 341 (686)
T ss_pred EECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcc-cCeEEEC-CCCCCEEEEEEEECCEEEEEEEeCCEEEEE
Confidence 222222222222 2223333332222 23334333221111 1111111 11224567777774422222244554 44
Q ss_pred EEECCCceeeeeee-cCCCCCCCeEEEEEC--CCCC-EEEEEeC---CCcEEEEeCCCcc
Q 001184 990 IYDGSKMECIRQWV-PQDVLSSPISSAAYS--CNSQ-LIYATFT---DGSIGVFDADSLR 1042 (1130)
Q Consensus 990 v~d~~~~~~~~~~~-~~~~~~~~v~~v~~s--~dg~-~l~t~~~---Dg~i~vwd~~~~~ 1042 (1130)
+++..++. +..+. .. ...+..+.++ +++. ++++.++ -+.++.||..+++
T Consensus 342 ~~~~~~~~-~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 342 QINRKTRE-VIGIAFDD---PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEcCCCCc-eEEecCCC---CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 55554333 33332 21 1223334444 4444 5554443 4779999998875
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.78 Score=47.13 Aligned_cols=178 Identities=9% Similarity=0.089 Sum_probs=115.8
Q ss_pred EecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-cCCcEEEE
Q 001184 913 LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIY 991 (1130)
Q Consensus 913 l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~ 991 (1130)
+.+-...|.++.|+|+.+.|++......-.||=-..|+.....++... .....+.+..+|+++++. .++.+.++
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-----~DpE~Ieyig~n~fvi~dER~~~l~~~ 155 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-----SDPETIEYIGGNQFVIVDERDRALYLF 155 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-----CChhHeEEecCCEEEEEehhcceEEEE
Confidence 344455699999999999999999888888887777777666555432 344568888999998885 58888888
Q ss_pred ECCCceeeeeee------cCCCC-CCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceee
Q 001184 992 DGSKMECIRQWV------PQDVL-SSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVF 1064 (1130)
Q Consensus 992 d~~~~~~~~~~~------~~~~~-~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1064 (1130)
.+..+..+.... +...+ +...-.++|+|.++.|+.+-+-.-+.||.+..+.......... .+...-.--...
T Consensus 156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~-~~~~~~~~f~~D 234 (316)
T COG3204 156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASL-DPTADRDLFVLD 234 (316)
T ss_pred EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccccccc-CcccccceEeec
Confidence 776543222111 11111 5678899999999999999888888888776333111111000 000000000111
Q ss_pred eEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q 001184 1065 PLVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1096 (1130)
Q Consensus 1065 ~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~ 1096 (1130)
+-.+.|++..+.+||-+.+++.|...+.....
T Consensus 235 vSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~ 266 (316)
T COG3204 235 VSGLEFNAITNSLLVLSDESRRLLEVDLSGEV 266 (316)
T ss_pred cccceecCCCCcEEEEecCCceEEEEecCCCe
Confidence 22356777778888888888888888776553
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.18 Score=60.32 Aligned_cols=103 Identities=19% Similarity=0.223 Sum_probs=76.0
Q ss_pred CCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCc
Q 001184 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA 498 (1130)
Q Consensus 420 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~ 498 (1130)
-+..+|.|+..|.+-..|+.+. +.+...-..-.++|++++|+.||+ .++.|-.+|.|.+|| ..++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 3557889999999998888764 221112233467899999999999 899999999999999 77888999988888
Q ss_pred CEEEEeecc-cCCccEEEEEecCCcEEEEEc
Q 001184 499 PVYSVCPHQ-KENIHFIFSTAVDGKIKAWLY 528 (1130)
Q Consensus 499 ~v~~~~~~~-~~~~~~l~s~s~dg~i~vwd~ 528 (1130)
+.+++-++. ..++..++++..-|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 887776542 233345777766665 5644
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.04 Score=53.92 Aligned_cols=104 Identities=18% Similarity=0.208 Sum_probs=68.7
Q ss_pred CCEEEEEe-CCeEEEEECCCceeE-EEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCC-CCee
Q 001184 845 DSYVMSAG-GGKVSLFNMMNFKVM-TTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQ-KHIT 921 (1130)
Q Consensus 845 g~~la~~~-dg~i~iwd~~~~~~~-~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~V~ 921 (1130)
+.-+++|. +|.|.+|+..-...+ .........|.++.-.-+++.+..++..||.|+.|++.-++.+.....|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 34455555 899999988632111 11112223333333333356689999999999999999999888888888 5566
Q ss_pred EEEEccCCCeEEEE--eCCCcEEEEECCC
Q 001184 922 GLAFSTNLNILVSS--GSDAQLIFWNTDT 948 (1130)
Q Consensus 922 ~l~~s~dg~~L~s~--s~Dg~i~vwd~~~ 948 (1130)
.+..+..++.++++ |.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 66666666677766 6777777777765
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.053 Score=39.08 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=29.4
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCc
Q 001184 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSN 442 (1130)
Q Consensus 409 ~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~ 442 (1130)
...|.+++|+|...+||.++.+|.|.+|.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 457999999999999999999999999998 443
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.06 Score=38.81 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=30.4
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCccc
Q 001184 1009 SSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRL 1043 (1130)
Q Consensus 1009 ~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~ 1043 (1130)
...|..++|+|...+||.++.||.|.||.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 568999999999999999999999999998 4543
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.41 E-value=1.5 Score=52.05 Aligned_cols=232 Identities=9% Similarity=0.013 Sum_probs=117.4
Q ss_pred CCCCEEEEEeCC------CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCC------CcEEEEe-c
Q 001184 419 PDGNFIGVAFTK------HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD------KLIRVWD-L 485 (1130)
Q Consensus 419 pdg~~las~~~d------~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d------~~v~iwd-~ 485 (1130)
..+..++.||.+ ..+..||..++.-. ....+. +...-.++++.. +. +.++||.| .++..|| .
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~-~~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~~ 357 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWS-SLAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDPR 357 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEe-ecCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecCC
Confidence 345566677666 36778888776321 111222 222234445543 44 78888888 3577888 5
Q ss_pred CCCeee--EecCCCcCEEEEeecccCCccEEEEEecCCc-----EEEEEccCCcceeeecCCCccEEEEE-EecCCCeEE
Q 001184 486 SGRKLF--QFEGHEAPVYSVCPHQKENIHFIFSTAVDGK-----IKAWLYDNVGSRVDYDAPGLWCTTML-YSADGSRLF 557 (1130)
Q Consensus 486 ~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~-----i~vwd~~~~~~~~~~~~~~~~v~~~~-~s~~~~~l~ 557 (1130)
.++... .+.......... .-+|.+.+.||.||. +..||..+.+=...-.... ...... ..-+|...+
T Consensus 358 ~~~W~~~a~M~~~R~~~~v~----~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi 432 (571)
T KOG4441|consen 358 TNQWTPVAPMNTKRSDFGVA----VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYI 432 (571)
T ss_pred CCceeccCCccCccccceeE----EECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEE
Confidence 444332 111111111111 124578888888864 6667665433222111111 122222 233677777
Q ss_pred EeeecCCCC--cEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCceeEEEeccC
Q 001184 558 SCGTSKEGD--SHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDN-----QIKFWDMDNVNMLTSTEAEG 630 (1130)
Q Consensus 558 ~~~~~~~~~--~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~ 630 (1130)
+||.+...+ ..+..||..+......-.......-..++. -++...+.||.|+ +|..||..+.+....-....
T Consensus 433 ~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 433 IGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred EcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence 777544322 678899988876543322211111112222 2556677777666 37788888776544422222
Q ss_pred CCCCcceEEEcCCCCEEEEEeCCCc-----EEEEEcCC
Q 001184 631 GLPSLPRLRFNKEGNLLVVTTADQG-----IKILANAD 663 (1130)
Q Consensus 631 ~~~~i~~v~~s~~~~~l~~~~~dg~-----i~iw~~~~ 663 (1130)
....+..+.. ++...++|+.||. |..||..+
T Consensus 512 ~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 512 PRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred ccccccEEEE--CCEEEEEecccCccccceeEEcCCCC
Confidence 2112222222 4667777877653 44555443
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.13 Score=61.35 Aligned_cols=102 Identities=18% Similarity=0.305 Sum_probs=76.3
Q ss_pred CCCEEEEEe-CCeEEEEECCCcee-EEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCee
Q 001184 844 NDSYVMSAG-GGKVSLFNMMNFKV-MTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHIT 921 (1130)
Q Consensus 844 dg~~la~~~-dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 921 (1130)
.+.+++.|+ .|.+-..|+.+.-. ...-..-.++|++++|+. +|.+++.|-.+|.|.+||+..++.++.+..|..+.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 455677777 57788888765311 111122357899999999 999999999999999999999999999988877776
Q ss_pred EEEE---ccCCCeEEEEeCCCcEEEEECCC
Q 001184 922 GLAF---STNLNILVSSGSDAQLIFWNTDT 948 (1130)
Q Consensus 922 ~l~~---s~dg~~L~s~s~Dg~i~vwd~~~ 948 (1130)
++-+ ..++..+.++..-|. +|.+.-
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~lv~ 204 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKLVF 204 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEEEe
Confidence 6544 445667888877775 777543
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.92 E-value=9.6 Score=46.32 Aligned_cols=94 Identities=14% Similarity=0.090 Sum_probs=55.9
Q ss_pred CCCceeEEEEecCCCEEEEEeCCeEEEEECCCc-eeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEE
Q 001184 832 AEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNF-KVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVK 910 (1130)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 910 (1130)
..-.|..+.++++|+++|..+...|.|..+... ..-..+.+....|.|=.+.= +..++.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~~------------------- 142 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFFT------------------- 142 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe-chhhcc-------------------
Confidence 456799999999999999988776666665321 11122222222222222211 111110
Q ss_pred EEEecCCCCeeEEEEccC---CCeEEEEeCCCcEEEEECCC
Q 001184 911 TKLKGHQKHITGLAFSTN---LNILVSSGSDAQLIFWNTDT 948 (1130)
Q Consensus 911 ~~l~~h~~~V~~l~~s~d---g~~L~s~s~Dg~i~vwd~~~ 948 (1130)
..+...|..+.|+|. +..|+.-..|+++++||+..
T Consensus 143 ---~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 143 ---SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred ---CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 123345677788776 46888888888888888865
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.26 Score=59.24 Aligned_cols=146 Identities=14% Similarity=0.107 Sum_probs=93.9
Q ss_pred CCceeEEEEecCCCEEEEEe--CC-eEEEEECCCceeEE-----EEeC------CCCCeEEEEEeCCCCcEEEEEeCCCc
Q 001184 833 EDVVPCVALSKNDSYVMSAG--GG-KVSLFNMMNFKVMT-----TFMS------PPPASTFLAFHPQDNNIIAIGMEDST 898 (1130)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~--dg-~i~iwd~~~~~~~~-----~~~~------~~~~i~~l~~sp~~~~~lasg~~dg~ 898 (1130)
.-.+..+...+|+...++.. +| .|..||+.+...-. .+.. ......++.|.|.=....|+...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 44566777788887766554 33 58999987643221 1111 22345677888743345667778999
Q ss_pred EEEEEeecCe-EEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCC
Q 001184 899 IQIYNVRVDE-VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQ 977 (1130)
Q Consensus 899 v~iwd~~~~~-~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 977 (1130)
|++..+.... .+..+. -....++++|+|.|+.|+.|-..|++.-|......+.. +..+.......|.++.|-...
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~---ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSE---IPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceeec---ccCCCcCCCcceeEEEEecce
Confidence 9988776332 222222 34568999999999999999999999888766532211 111222224678888888777
Q ss_pred cEEEE
Q 001184 978 VRLLV 982 (1130)
Q Consensus 978 ~~l~~ 982 (1130)
.++++
T Consensus 256 eflvv 260 (1405)
T KOG3630|consen 256 EFLVV 260 (1405)
T ss_pred eEEEE
Confidence 77765
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.75 E-value=6 Score=40.95 Aligned_cols=187 Identities=13% Similarity=0.137 Sum_probs=115.0
Q ss_pred CCCceeEEEEecCCCEEEEEeC-CeEEEEECCCceeEEEEeCC-CCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeE
Q 001184 832 AEDVVPCVALSKNDSYVMSAGG-GKVSLFNMMNFKVMTTFMSP-PPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV 909 (1130)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~d-g~i~iwd~~~~~~~~~~~~~-~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 909 (1130)
....+.++.|+|+.+.|.+..+ ..-.|+=...|+.++++... ....-.+.+.. +++++++--.++.++++.+..+..
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCCcc
Confidence 4455999999999998887774 55666666788898887632 23345677877 888888888889999998876522
Q ss_pred EEE-------Ee--cC-CCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCC------CCCeEEEEE
Q 001184 910 KTK-------LK--GH-QKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKL------PVGETRVQF 973 (1130)
Q Consensus 910 ~~~-------l~--~h-~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~------~~~v~~~~~ 973 (1130)
+.. +. .+ ...--.++|.|..+.|..+=+-.-+.|+........ ........+. -..+..+.|
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~--l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS--LSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc--cccccccCcccccceEeecccccee
Confidence 211 11 12 445778999999999999888877888777643211 1111111111 135677788
Q ss_pred cCCCcEEEE-Ec-CCcEEEEECCCceeeeeeecC---CCCCC---CeEEEEECCCCC
Q 001184 974 HSDQVRLLV-NH-ETQLAIYDGSKMECIRQWVPQ---DVLSS---PISSAAYSCNSQ 1022 (1130)
Q Consensus 974 s~d~~~l~~-~~-d~~i~v~d~~~~~~~~~~~~~---~~~~~---~v~~v~~s~dg~ 1022 (1130)
.+....|.+ |+ ++.+.-.|.. |..+..+... ++... ..-.++..++|.
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~ 296 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN 296 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCC
Confidence 865444444 54 4455555554 4434443222 11111 234566666665
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.58 E-value=5.2 Score=48.52 Aligned_cols=99 Identities=9% Similarity=0.131 Sum_probs=58.9
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCC
Q 001184 408 SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSG 487 (1130)
Q Consensus 408 h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~ 487 (1130)
....|..|.+||+|++||..|..| |.|-.+... ......+.+-...|.|=.+.-+.. +.+
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r--~g~~~~~~~g~~~i~Crt~~v~~~---~~~-------------- 142 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRG-VVVLELPRR--WGKNGEFEDGKKEINCRTVPVDER---FFT-------------- 142 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCc-EEEEEeccc--cCccccccCCCcceeEEEEEechh---hcc--------------
Confidence 456899999999999999998876 444444220 000001222223343333332222 111
Q ss_pred CeeeEecCCCcCEEEEeecccC-CccEEEEEecCCcEEEEEccCCc
Q 001184 488 RKLFQFEGHEAPVYSVCPHQKE-NIHFIFSTAVDGKIKAWLYDNVG 532 (1130)
Q Consensus 488 ~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~ 532 (1130)
..+...|..+.|+|.. ++..|+.-..|+++|+||+....
T Consensus 143 ------~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 143 ------SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred ------CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 1245667788888764 45677888888999999886543
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.072 Score=52.17 Aligned_cols=143 Identities=11% Similarity=0.034 Sum_probs=78.1
Q ss_pred EEEEEecCCcEEEEEccCCcceeeec-CCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC-CceeEEEecccCce
Q 001184 513 FIFSTAVDGKIKAWLYDNVGSRVDYD-APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE-GALKRTYIGFRKKS 590 (1130)
Q Consensus 513 ~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~ 590 (1130)
.+...+.||.|+-++++.......-. .+... .....-+..+++++. +|.|++|.... +.....+.......
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~----dg~v~~~n~n~~g~~~d~~~s~~e~i 104 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTS----DGAVYVFNWNLEGAHSDRVCSGEESI 104 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecc----cceEEEecCCccchHHHhhhcccccc
Confidence 35556778888877766433222110 01111 122223455666654 88899888652 22222222112212
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEE--eCCCcEEEEEcCC
Q 001184 591 AGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVT--TADQGIKILANAD 663 (1130)
Q Consensus 591 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~--~~dg~i~iw~~~~ 663 (1130)
...+....++.+..+++.||.||.|+....+.+.....+... ++.....+..+++++.+ +.|..++.|++..
T Consensus 105 ~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~-~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 105 DLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFE-SGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeccccccccceeEEeccCCceeeeccccCceeeeeccccCC-CcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 222333445567888999999999999988887776655432 33333444445555555 6666666666543
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.015 Score=67.20 Aligned_cols=255 Identities=11% Similarity=0.162 Sum_probs=131.9
Q ss_pred CCCCceeEEEEecCC-CEEEEEeCCeEEEEECC--CceeEEEEe-----CCCCC---eEEEEEeCCCCcEEEEEeCCCcE
Q 001184 831 NAEDVVPCVALSKND-SYVMSAGGGKVSLFNMM--NFKVMTTFM-----SPPPA---STFLAFHPQDNNIIAIGMEDSTI 899 (1130)
Q Consensus 831 ~~~~~i~~l~~s~dg-~~la~~~dg~i~iwd~~--~~~~~~~~~-----~~~~~---i~~l~~sp~~~~~lasg~~dg~v 899 (1130)
+..+.+..++|.... ..+. -.-|.+.||++. .|+....+. ..... |.-.-|.+ +.-++..+..+++|
T Consensus 130 gf~G~v~dl~fah~~~pk~~-~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~-~~~~ic~~~~~~~i 207 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR-RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAV-NKVYICYGLKGGEI 207 (1283)
T ss_pred cCCCCcccccccccCChHHH-HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeeccccc-ccceeeeccCCCce
Confidence 455666666663211 1111 112678888864 344333322 11222 33334444 55778888889999
Q ss_pred EEEEeecCeEEEEEecCCCCeeEEE-----------EccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCe
Q 001184 900 QIYNVRVDEVKTKLKGHQKHITGLA-----------FSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGE 968 (1130)
Q Consensus 900 ~iwd~~~~~~~~~l~~h~~~V~~l~-----------~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v 968 (1130)
++....+... ..+.+|...++.++ .||||..++.++.||.+++|.+--..+....+......|...+-
T Consensus 208 ~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~ 286 (1283)
T KOG1916|consen 208 RLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPR 286 (1283)
T ss_pred eEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCc
Confidence 9877664432 34556877766654 48999999999999999999876533333333333333322222
Q ss_pred EEEEEcCCC---------cEEEEE--cCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCE------------EE
Q 001184 969 TRVQFHSDQ---------VRLLVN--HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQL------------IY 1025 (1130)
Q Consensus 969 ~~~~~s~d~---------~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~------------l~ 1025 (1130)
.|.-++... .+++++ -+..+++|.....+|...+. ...|..+. -+||+. ++
T Consensus 287 vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~-----~d~v~iV~-p~~~~v~~~~~~~~~~~~~v 360 (1283)
T KOG1916|consen 287 VCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKL-----IDGVQIVG-PHDGEVTDLSMCQWMTTRLV 360 (1283)
T ss_pred eeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhc-----ccceEeec-CCCccccchhhhHHHHHHHH
Confidence 333343321 133333 25678888887777662221 22444444 334442 22
Q ss_pred EEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCC--CCCEEEEEeC-CCcEEEEeCCCCccCCccc
Q 001184 1026 ATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQ--EPNQLAVGLT-DGSVKVIEPSETERKWGVA 1102 (1130)
Q Consensus 1026 t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~-Dg~v~vW~~~~~~~~w~~~ 1102 (1130)
..+-|+.|.+|.-..-.......++. +|.+...-..-+|. +.-.+.+|+. ...+.+|-....+. |-.+
T Consensus 361 ~r~v~~~i~~~qn~~a~~~~vs~~~~--------~hpV~S~i~v~S~~R~~h~e~~~~~~~nr~~~i~~s~g~~g-~ls~ 431 (1283)
T KOG1916|consen 361 SRSVDGTIKIWQNRKAQPLVVSRPHD--------GHPVLSAIFVTSPERPDHIELITGGPLNRELKIWVSAGEEG-WLSP 431 (1283)
T ss_pred HhhhHHHHHHhhcchhhhhhhhhhhh--------cceeccccccccCCCccccccccCCcchhhhhhhhhccccc-ccch
Confidence 34457888888543322222222222 23333322233332 2234455554 45677776654443 6443
Q ss_pred c
Q 001184 1103 V 1103 (1130)
Q Consensus 1103 ~ 1103 (1130)
+
T Consensus 432 a 432 (1283)
T KOG1916|consen 432 A 432 (1283)
T ss_pred h
Confidence 3
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.30 E-value=1.6 Score=52.24 Aligned_cols=194 Identities=11% Similarity=0.093 Sum_probs=95.7
Q ss_pred CCcEEEEEeCCC------cEEEEEeecCeEEEE--EecCCCCeeEEEEccCCCeEEEEeCC-----CcEEEEECCCCccc
Q 001184 886 DNNIIAIGMEDS------TIQIYNVRVDEVKTK--LKGHQKHITGLAFSTNLNILVSSGSD-----AQLIFWNTDTWEKR 952 (1130)
Q Consensus 886 ~~~~lasg~~dg------~v~iwd~~~~~~~~~--l~~h~~~V~~l~~s~dg~~L~s~s~D-----g~i~vwd~~~~~~~ 952 (1130)
++.+++.|+.++ .+..||..+.+-... +.........+ .-+++..+.||.+ ..+..||..+++..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 455666665442 467777776543221 11111111222 2366777777765 34778888775433
Q ss_pred ceeeEeccCCCCCCCeEEEEEcCCCcEEEEEc---C----CcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEE
Q 001184 953 KSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH---E----TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIY 1025 (1130)
Q Consensus 953 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~---d----~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 1025 (1130)
.......+. .-.+++ .-++.+.+.|. + +.+..||..+.+-...-..... .... + +...++++.+
T Consensus 372 ~~~~lp~~r-----~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~-r~~~-~-~~~~~~~iyv 442 (534)
T PHA03098 372 EEPPLIFPR-----YNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPIS-HYGG-C-AIYHDGKIYV 442 (534)
T ss_pred eCCCcCcCC-----ccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcc-ccCc-e-EEEECCEEEE
Confidence 222111111 111222 23455555532 1 4588999887654332111111 1111 2 2234677777
Q ss_pred EEeCC--------CcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCC-----CcEEEEeC
Q 001184 1026 ATFTD--------GSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTD-----GSVKVIEP 1092 (1130)
Q Consensus 1026 t~~~D--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D-----g~v~vW~~ 1092 (1130)
.|+.+ ..+.+||..+++....-... .+.. .+ .. +.. ++.+++.||.+ +.|.++|+
T Consensus 443 ~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~--~~r~---~~---~~-~~~---~~~iyv~GG~~~~~~~~~v~~yd~ 510 (534)
T PHA03098 443 IGGISYIDNIKVYNIVESYNPVTNKWTELSSLN--FPRI---NA---SL-CIF---NNKIYVVGGDKYEYYINEIEVYDD 510 (534)
T ss_pred ECCccCCCCCcccceEEEecCCCCceeeCCCCC--cccc---cc---eE-EEE---CCEEEEEcCCcCCcccceeEEEeC
Confidence 77643 23888998887654322111 1111 11 11 222 46788888765 46788888
Q ss_pred CCCccCCccccc
Q 001184 1093 SETERKWGVAVP 1104 (1130)
Q Consensus 1093 ~~~~~~w~~~~p 1104 (1130)
.+.. |....+
T Consensus 511 ~~~~--W~~~~~ 520 (534)
T PHA03098 511 KTNT--WTLFCK 520 (534)
T ss_pred CCCE--EEecCC
Confidence 7665 976544
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.28 E-value=1.1 Score=52.36 Aligned_cols=111 Identities=14% Similarity=0.169 Sum_probs=74.9
Q ss_pred CeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEec-CCCcCEEEEeecccCCccEEEEEecCCcEEEEEc-----
Q 001184 456 GVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFE-GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLY----- 528 (1130)
Q Consensus 456 ~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~----- 528 (1130)
...-+.-|.-++ ..+.-+....+.||| ..+.....-. ...+.|.++.|...++++.+++.|..+.|.++--
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 344455555555 444455556899999 4444332222 4578999999999999999999999999999842
Q ss_pred cCCcc----ee--eecC-CCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeC
Q 001184 529 DNVGS----RV--DYDA-PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE 574 (1130)
Q Consensus 529 ~~~~~----~~--~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1130)
....+ +. .+.. ..++|....|.++|..++.+ .+++.++|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s------GNqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS------GNQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe------CCEEEEECC
Confidence 12111 11 2222 33678999999999888776 457888874
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.88 Score=51.24 Aligned_cols=155 Identities=12% Similarity=0.165 Sum_probs=90.7
Q ss_pred CCeEEEEEeCCCCcEEEEEe--CCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCC----CeEEEEeCCCcEEEEECCC
Q 001184 875 PASTFLAFHPQDNNIIAIGM--EDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNL----NILVSSGSDAQLIFWNTDT 948 (1130)
Q Consensus 875 ~~i~~l~~sp~~~~~lasg~--~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg----~~L~s~s~Dg~i~vwd~~~ 948 (1130)
.++..++|.. +.+++.+.- .+|.+++=| .+.+..| ..|.++.|+|-+ ..|...-..+.|.||-+..
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 4577888885 556555543 334433322 2334444 448999999853 3566667788899999874
Q ss_pred CcccceeeE--eccCC--CCCCCeEEEEEcCCCcEEEE-EcCCcEEEEECCCce-eee-eeecCCCCCCCeEEEEECCCC
Q 001184 949 WEKRKSIAI--QLPAG--KLPVGETRVQFHSDQVRLLV-NHETQLAIYDGSKME-CIR-QWVPQDVLSSPISSAAYSCNS 1021 (1130)
Q Consensus 949 ~~~~~~~~~--~~~~~--~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~-~~~-~~~~~~~~~~~v~~v~~s~dg 1021 (1130)
......... +..+. ..+.-.....|+|....|++ .....-.++++.... .++ .+.. .+.|.|.||.+||
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~----~G~IhCACWT~DG 167 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKT----SGLIHCACWTKDG 167 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccC----CceEEEEEecCcC
Confidence 322222211 11111 11223346789999999988 333333455554322 222 2222 5789999999999
Q ss_pred CEEEEEeC-CCcEEEEeCCCc
Q 001184 1022 QLIYATFT-DGSIGVFDADSL 1041 (1130)
Q Consensus 1022 ~~l~t~~~-Dg~i~vwd~~~~ 1041 (1130)
+.|+++-. .=.-+|||-...
T Consensus 168 ~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred CEEEEEeCCeEEEEEecCchh
Confidence 97776552 334689986544
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.21 E-value=2.3 Score=41.28 Aligned_cols=179 Identities=11% Similarity=0.065 Sum_probs=97.6
Q ss_pred CCCEEEEEe---CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCe
Q 001184 844 NDSYVMSAG---GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHI 920 (1130)
Q Consensus 844 dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V 920 (1130)
||.++.+.+ ...|++||+.+++.+..-.-....+..=-...-+..+.+-.-.+|.-..||.++.+++..+.- .+.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcc
Confidence 455665555 356999999999887765533212111111110233444456788889999998887776652 2334
Q ss_pred eEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE-EcCCcEEEEECCCceee
Q 001184 921 TGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGSKMECI 999 (1130)
Q Consensus 921 ~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~ 999 (1130)
+.++ .|++.|+.++...++++-|.++................ .....+.|- ||...|- =.+..|...+..+|+.+
T Consensus 134 WgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv-~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~ 209 (262)
T COG3823 134 WGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPV-SKLNELEWV-DGELYANVWQTTRIARIDPDSGRVV 209 (262)
T ss_pred eeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeec-ccccceeee-ccEEEEeeeeecceEEEcCCCCcEE
Confidence 4444 46777888877778888888775544333322211100 112222222 2333221 23444555566666655
Q ss_pred eeeec---------CCCCCCCeEEEEECCCCC-EEEEE
Q 001184 1000 RQWVP---------QDVLSSPISSAAYSCNSQ-LIYAT 1027 (1130)
Q Consensus 1000 ~~~~~---------~~~~~~~v~~v~~s~dg~-~l~t~ 1027 (1130)
.-+.. ...+..-.+.+++.|++. ++++|
T Consensus 210 ~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 210 AWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 44321 122244568899999874 55554
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.08 E-value=1.6 Score=52.27 Aligned_cols=190 Identities=13% Similarity=0.032 Sum_probs=93.2
Q ss_pred cCCCEEEEEe-C------CeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCC-----CcEEEEEeecCeEE
Q 001184 843 KNDSYVMSAG-G------GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED-----STIQIYNVRVDEVK 910 (1130)
Q Consensus 843 ~dg~~la~~~-d------g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~d-----g~v~iwd~~~~~~~ 910 (1130)
.++..++.|+ + ..+..||..+.+-...-..+......-...- ++.+.+.|+.+ ..+..||..+++-.
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF-NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE-CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 4556666665 2 2477888877655322111111111111222 67788888866 34777887765422
Q ss_pred E--EEecCCCCeeEEEEccCCCeEEEEeCC------CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE
Q 001184 911 T--KLKGHQKHITGLAFSTNLNILVSSGSD------AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1130)
Q Consensus 911 ~--~l~~h~~~V~~l~~s~dg~~L~s~s~D------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 982 (1130)
. .+....... ++ ..-+++..+.||.+ ..+..||..+++...... .+... ...++ ...++...+.
T Consensus 372 ~~~~lp~~r~~~-~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~--~p~~r---~~~~~-~~~~~~iyv~ 443 (534)
T PHA03098 372 EEPPLIFPRYNP-CV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP--LPISH---YGGCA-IYHDGKIYVI 443 (534)
T ss_pred eCCCcCcCCccc-eE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCC--CCccc---cCceE-EEECCEEEEE
Confidence 1 111111111 11 22356777777632 357889988754332211 11111 11122 2234555554
Q ss_pred Ec-C--------CcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCC-----CcEEEEeCCCcccc
Q 001184 983 NH-E--------TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLRLR 1044 (1130)
Q Consensus 983 ~~-d--------~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D-----g~i~vwd~~~~~~~ 1044 (1130)
|. + ..+.+||..+.+-...-..... ......+. -++++++.|+.+ ..|.+||..+.+..
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP-RINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCceeeCCCCCcc-cccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence 32 1 2388899887654332111100 11112222 277877888754 46888888877643
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.90 E-value=4.7 Score=47.06 Aligned_cols=205 Identities=10% Similarity=0.118 Sum_probs=103.3
Q ss_pred CCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEE
Q 001184 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1130)
Q Consensus 348 ~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 427 (1130)
+++.+|..+|....=++ +..-.|+|+++. |..+.. ++-.|. .+..+.||.+..+|+ .
T Consensus 44 gGpIAV~r~p~~~~~~~--~a~~~I~If~~s-G~lL~~------------------~~w~~~-~lI~mgWs~~eeLI~-v 100 (829)
T KOG2280|consen 44 GGPIAVTRSPSKLVPLY--SARPYIRIFNIS-GQLLGR------------------ILWKHG-ELIGMGWSDDEELIC-V 100 (829)
T ss_pred CCceEEEeccccccccc--ccceeEEEEecc-ccchHH------------------HHhcCC-CeeeecccCCceEEE-E
Confidence 34555555554321111 233468888875 444432 122333 788999998876554 5
Q ss_pred eCCCeEEEEEecCCccceee-eeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCC-CcCEEEEe
Q 001184 428 FTKHLIHLYTYQGSNDLCQS-LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGH-EAPVYSVC 504 (1130)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~-~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h-~~~v~~~~ 504 (1130)
..+|+++||++-... +... .-.......|..+.|..+|= .+.+ .+|.+.+-+ .+...+.++..- ......-|
T Consensus 101 ~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV--avlt--~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~ 175 (829)
T KOG2280|consen 101 QKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV--AVLT--VSGQVILINGVEEPKLRKMPDIPYNELPKSC 175 (829)
T ss_pred eccceEEEeecchhh-hcccccccccccCceeEEEEecCce--EEEe--cCCcEEEEcCCCcchhhhCCCCCCccCCCcc
Confidence 689999999986532 2210 11123334566677766553 3333 345555555 443344443321 11111122
Q ss_pred ecccCC---ccEEEEEe-cCCcEEEEEccCCc-ceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCce
Q 001184 505 PHQKEN---IHFIFSTA-VDGKIKAWLYDNVG-SRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL 579 (1130)
Q Consensus 505 ~~~~~~---~~~l~s~s-~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1130)
|.-..+ ...++-.. ..+ ..++..+... ....+......+..+.+||+.++|+.-.. .|.|.+-+....+.
T Consensus 176 Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~----~G~i~~vs~D~~~~ 250 (829)
T KOG2280|consen 176 WTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE----TGKIWVVSIDLSQI 250 (829)
T ss_pred eeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEec----CCcEEEEecchhhh
Confidence 211111 11111111 000 0111111111 11122223356788999999999998765 78888888777766
Q ss_pred eEEEec
Q 001184 580 KRTYIG 585 (1130)
Q Consensus 580 ~~~~~~ 585 (1130)
...+..
T Consensus 251 lce~~~ 256 (829)
T KOG2280|consen 251 LCEFNC 256 (829)
T ss_pred hhccCC
Confidence 666553
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=93.64 E-value=23 Score=43.53 Aligned_cols=198 Identities=14% Similarity=0.115 Sum_probs=112.8
Q ss_pred EEEEEcCCCcEEEEe-cCCCeeeEecCCCcC--------EEEEeecc--------------cCCccEEEEEecCCcEEEE
Q 001184 470 CIVTCGDDKLIRVWD-LSGRKLFQFEGHEAP--------VYSVCPHQ--------------KENIHFIFSTAVDGKIKAW 526 (1130)
Q Consensus 470 ~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~--------v~~~~~~~--------------~~~~~~l~s~s~dg~i~vw 526 (1130)
.++.++.++.|.-.| .+|+.+-++...... ...+.+.. ......++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 355666667777777 777776665432110 11222221 1233478888889999999
Q ss_pred EccCCcceeeecCCCcc------------EEEEEEec--CCCeEEEeeecCC------CCcEEEEeeCCCCceeEEEecc
Q 001184 527 LYDNVGSRVDYDAPGLW------------CTTMLYSA--DGSRLFSCGTSKE------GDSHLVEWNESEGALKRTYIGF 586 (1130)
Q Consensus 527 d~~~~~~~~~~~~~~~~------------v~~~~~s~--~~~~l~~~~~~~~------~~~~i~~wd~~~~~~~~~~~~~ 586 (1130)
|.++++....+...+.. ...+.-.| .+..+++++...+ .+|.|+-+|.++|+.+-.+...
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 99888877655332110 00111112 1345555543222 2688999999999998776521
Q ss_pred c---------C--------ceeEEEEEcCCCCEEEEEe------------------CCCcEEEEeCCCCceeEEEeccCC
Q 001184 587 R---------K--------KSAGVVQFDTTRNRILAAG------------------EDNQIKFWDMDNVNMLTSTEAEGG 631 (1130)
Q Consensus 587 ~---------~--------~~v~~~~~~~~~~~l~~~~------------------~dg~i~vwd~~~~~~~~~~~~~~~ 631 (1130)
. + ..-...++.++...++.+. ..+.|.-.|.++|+..-.++...|
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 0 0 0012345555555555422 235677788889988776655222
Q ss_pred C-------CCcceEEEcC-CCC---EEEEEeCCCcEEEEEcCCCchh
Q 001184 632 L-------PSLPRLRFNK-EGN---LLVVTTADQGIKILANADGLRA 667 (1130)
Q Consensus 632 ~-------~~i~~v~~s~-~~~---~l~~~~~dg~i~iw~~~~~~~~ 667 (1130)
. ....-+.+.. +|+ .++.++.+|.+.++|-++++..
T Consensus 436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence 1 0111122322 553 7899999999999999998433
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=93.39 E-value=2.6 Score=49.49 Aligned_cols=121 Identities=12% Similarity=0.219 Sum_probs=77.7
Q ss_pred EeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEe-cCCCCeeEEEE--ccCCCeEEEEeCCCcEEEEEC
Q 001184 870 FMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLK-GHQKHITGLAF--STNLNILVSSGSDAQLIFWNT 946 (1130)
Q Consensus 870 ~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-~h~~~V~~l~~--s~dg~~L~s~s~Dg~i~vwd~ 946 (1130)
+...-..++-+.-|. -++..++-+....+.|||...+.+...-. ...+.|.++.| .|||+.+++.|-...|.++.-
T Consensus 25 ~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 25 FETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred EecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 333334455555555 45555555555679999999887543322 35688999988 478999999999999999865
Q ss_pred CCCc----c---cceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEEC
Q 001184 947 DTWE----K---RKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDG 993 (1130)
Q Consensus 947 ~~~~----~---~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~ 993 (1130)
.... . .....+.. ....+.+|.+..|.++|.+++ +.++.+.|+|-
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i-~~~T~h~Igds~Wl~~G~LvV-~sGNqlfv~dk 155 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDI-SSHTPHPIGDSIWLKDGTLVV-GSGNQLFVFDK 155 (631)
T ss_pred cchhhhcCCcccceeEEEEe-ecCCCCCccceeEecCCeEEE-EeCCEEEEECC
Confidence 3211 0 01111112 223446788999999997655 45667888874
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.36 E-value=3.9 Score=47.87 Aligned_cols=190 Identities=12% Similarity=0.036 Sum_probs=95.2
Q ss_pred CCcEEEEEeCCC-----cEEEEEeecCeEEE--EEecCCCCeeEEEEccCCCeEEEEeCC--CcEEEEECCCCcccceee
Q 001184 886 DNNIIAIGMEDS-----TIQIYNVRVDEVKT--KLKGHQKHITGLAFSTNLNILVSSGSD--AQLIFWNTDTWEKRKSIA 956 (1130)
Q Consensus 886 ~~~~lasg~~dg-----~v~iwd~~~~~~~~--~l~~h~~~V~~l~~s~dg~~L~s~s~D--g~i~vwd~~~~~~~~~~~ 956 (1130)
++.++++|+.++ .+..||..+++-.. .+....... +++ .-+|...+.||.+ ..+..||..+++...
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~--- 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVN--- 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCeEEE---
Confidence 566777777653 46678877654322 222111111 122 2367777777754 357788876543221
Q ss_pred EeccCCCCCCCeEEEEEcCCCcEEEE-EcC---CcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCc
Q 001184 957 IQLPAGKLPVGETRVQFHSDQVRLLV-NHE---TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGS 1032 (1130)
Q Consensus 957 ~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d---~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~ 1032 (1130)
.+....+..-.+ +..-+|+..+. |.+ ..+..||..+.+-...-..... ... ..+..-+|++.+.|+ .
T Consensus 346 --~~~l~~~r~~~~-~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~-r~~--~~~~~~~~~IYv~GG---~ 416 (480)
T PHA02790 346 --MPSLLKPRCNPA-VASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP-HYK--SCALVFGRRLFLVGR---N 416 (480)
T ss_pred --CCCCCCCCcccE-EEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc-ccc--ceEEEECCEEEEECC---c
Confidence 111111111111 22335555555 322 4577898876654332111110 111 122234677666664 5
Q ss_pred EEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCC-----CcEEEEeCCCCccCCcccc
Q 001184 1033 IGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTD-----GSVKVIEPSETERKWGVAV 1103 (1130)
Q Consensus 1033 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D-----g~v~vW~~~~~~~~w~~~~ 1103 (1130)
+.+||..+.+....-.. +. ......+.+. ++.+.+.||.+ .++..+|+.+.+ |...+
T Consensus 417 ~e~ydp~~~~W~~~~~m----~~----~r~~~~~~v~----~~~IYviGG~~~~~~~~~ve~Yd~~~~~--W~~~~ 478 (480)
T PHA02790 417 AEFYCESSNTWTLIDDP----IY----PRDNPELIIV----DNKLLLIGGFYRGSYIDTIEVYNNRTYS--WNIWD 478 (480)
T ss_pred eEEecCCCCcEeEcCCC----CC----CccccEEEEE----CCEEEEECCcCCCcccceEEEEECCCCe--EEecC
Confidence 78899887765432211 11 1111122222 56788888865 458889988776 86543
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=93.14 E-value=19 Score=41.11 Aligned_cols=151 Identities=12% Similarity=0.084 Sum_probs=85.2
Q ss_pred CCeeEEEEecCCCceEEEEEc--CCCcEEEEecCCCeeeEecCCCcCEEEEeecccC--CccEEEEEecCCcEEEEEccC
Q 001184 455 GGVNDLAFSYPNKQLCIVTCG--DDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKE--NIHFIFSTAVDGKIKAWLYDN 530 (1130)
Q Consensus 455 ~~V~~i~~s~d~~~l~l~s~s--~d~~v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~--~~~~l~s~s~dg~i~vwd~~~ 530 (1130)
.+|..++|. ||++ .++|.- ..|.+++=| .+.+ |.-..|..++|.|.. +...+++..-...|.+|.+..
T Consensus 20 HPvhGlaWT-DGkq-VvLT~L~l~~gE~kfGd--s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQ-VVLTDLQLHNGEPKFGD--SKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCE-EEEEeeeeeCCccccCC--ccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 468899998 6765 555542 122222222 1122 333458888887653 233566777788999998752
Q ss_pred C-----cceeeecCC-Cc----cEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC--CceeEEEecccCceeEEEEEcC
Q 001184 531 V-----GSRVDYDAP-GL----WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE--GALKRTYIGFRKKSAGVVQFDT 598 (1130)
Q Consensus 531 ~-----~~~~~~~~~-~~----~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--~~~~~~~~~~~~~~v~~~~~~~ 598 (1130)
. +.......+ .. -...+.|.|....|++-.. ...-.++++.. .+....+. ..+.|.|.+|..
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~----~dvSV~~sV~~d~srVkaDi~--~~G~IhCACWT~ 165 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA----RDVSVLPSVHCDSSRVKADIK--TSGLIHCACWTK 165 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec----CceeEeeeeeeCCceEEEecc--CCceEEEEEecC
Confidence 1 111111110 00 1245778998888777653 22223344432 23333333 445799999999
Q ss_pred CCCEEEEE-eCCCcEEEEeCCC
Q 001184 599 TRNRILAA-GEDNQIKFWDMDN 619 (1130)
Q Consensus 599 ~~~~l~~~-~~dg~i~vwd~~~ 619 (1130)
||++|+++ +..=.-++||-..
T Consensus 166 DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 166 DGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred cCCEEEEEeCCeEEEEEecCch
Confidence 99987775 3344578898654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.03 E-value=4.2 Score=47.41 Aligned_cols=148 Identities=14% Similarity=0.190 Sum_probs=85.0
Q ss_pred CCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcC
Q 001184 896 DSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHS 975 (1130)
Q Consensus 896 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 975 (1130)
--.|+||+.. |+++..+.-..+++..+.|+.+ ..|++...||++.+|++......... .........|....+..
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie~~s---vg~e~~~~~I~ec~~f~ 137 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIESNS---VGFESQMSDIVECRFFH 137 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhcccc---cccccccCceeEEEEec
Confidence 3458888864 5666555444457889999965 57778889999999998763332210 00000112233333333
Q ss_pred CCcEEEEEcCC--------cEEEEECCC-------ceeeeeeec----------------------------C--CCCCC
Q 001184 976 DQVRLLVNHET--------QLAIYDGSK-------MECIRQWVP----------------------------Q--DVLSS 1010 (1130)
Q Consensus 976 d~~~l~~~~d~--------~i~v~d~~~-------~~~~~~~~~----------------------------~--~~~~~ 1010 (1130)
.|-.+.+.++. ...+|.... ..+...+.. + ....+
T Consensus 138 ~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~ 217 (829)
T KOG2280|consen 138 NGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNS 217 (829)
T ss_pred CceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCc
Confidence 44333332211 112222111 000000000 0 00135
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccC
Q 001184 1011 PISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIA 1048 (1130)
Q Consensus 1011 ~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~ 1048 (1130)
.+..+.+||+.++|+.=..+|.|.+-+.+..+..+.+.
T Consensus 218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 218 SVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred eEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 67889999999999999999999999999888888876
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.93 E-value=3.2 Score=48.58 Aligned_cols=185 Identities=11% Similarity=0.007 Sum_probs=91.0
Q ss_pred cCCCEEEEEe-C-----CeEEEEECCCceeEEEEeCCCCCe-EEEEEeCCCCcEEEEEeCC--CcEEEEEeecCeEE--E
Q 001184 843 KNDSYVMSAG-G-----GKVSLFNMMNFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGMED--STIQIYNVRVDEVK--T 911 (1130)
Q Consensus 843 ~dg~~la~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~i-~~l~~sp~~~~~lasg~~d--g~v~iwd~~~~~~~--~ 911 (1130)
.++.++++|+ + ..+..||..+++-...-.-..... .+++ .- ++.+.++|+.+ .++..||..+++-. .
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PA-NNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EE-CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 3455666665 2 247788887765433221111111 1222 23 67888888864 35788887654322 2
Q ss_pred EEecCCCCeeEEEEccCCCeEEEEeCCC---cEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcE
Q 001184 912 KLKGHQKHITGLAFSTNLNILVSSGSDA---QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQL 988 (1130)
Q Consensus 912 ~l~~h~~~V~~l~~s~dg~~L~s~s~Dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i 988 (1130)
.+....... .+..-+|+..+.||.++ .+..||..+.+.........+. .-.+ +..-+|+..+.| |.+
T Consensus 348 ~l~~~r~~~--~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r-----~~~~-~~~~~~~IYv~G--G~~ 417 (480)
T PHA02790 348 SLLKPRCNP--AVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH-----YKSC-ALVFGRRLFLVG--RNA 417 (480)
T ss_pred CCCCCCccc--EEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc-----ccce-EEEECCEEEEEC--Cce
Confidence 222111111 12233677777777653 4678888765432221111111 1111 223455555555 356
Q ss_pred EEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCC-----CcEEEEeCCCcc
Q 001184 989 AIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLR 1042 (1130)
Q Consensus 989 ~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D-----g~i~vwd~~~~~ 1042 (1130)
.+||..+.+-...-.... .......+ .-+|++.+.|+.+ ..+.+||..+++
T Consensus 418 e~ydp~~~~W~~~~~m~~-~r~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 418 EFYCESSNTWTLIDDPIY-PRDNPELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred EEecCCCCcEeEcCCCCC-CccccEEE--EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 788887655432211111 01122222 2367888888754 346677766554
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=92.93 E-value=12 Score=38.21 Aligned_cols=203 Identities=13% Similarity=0.081 Sum_probs=126.1
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCccccee
Q 001184 876 ASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSI 955 (1130)
Q Consensus 876 ~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~ 955 (1130)
.-..++-+| ||..-.++...|.|--.|-.+|+....--+....-..|..-|||..-++-+.. -|.-.|-++.+ ..
T Consensus 63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~e---vt 137 (353)
T COG4257 63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLE---VT 137 (353)
T ss_pred CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccc---eE
Confidence 345677788 88888888888888888888998776655555566778889998877765544 35555555543 22
Q ss_pred eEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 001184 956 AIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGV 1035 (1130)
Q Consensus 956 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~v 1035 (1130)
...++..+.........|.++|.+..++..|.---.|... ..+..+.... ...-+.||..|||..-++.-.+..|..
T Consensus 138 ~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~-~~i~vfpaPq--G~gpyGi~atpdGsvwyaslagnaiar 214 (353)
T COG4257 138 RFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPAR-NVISVFPAPQ--GGGPYGICATPDGSVWYASLAGNAIAR 214 (353)
T ss_pred EeecccccCCCcccceeeCCCccEEEeeccccceecCccc-CceeeeccCC--CCCCcceEECCCCcEEEEeccccceEE
Confidence 3444445555788899999999998885432211111111 1122222221 345678999999999888888888888
Q ss_pred EeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q 001184 1036 FDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1096 (1130)
Q Consensus 1036 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~ 1096 (1130)
-|-.++.. ..+.....+. .. .- -.|+..-+..-+|....+.+.-+|.+...
T Consensus 215 idp~~~~a-ev~p~P~~~~-----~g---sR-riwsdpig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 215 IDPFAGHA-EVVPQPNALK-----AG---SR-RIWSDPIGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred cccccCCc-ceecCCCccc-----cc---cc-ccccCccCcEEEeccCCceeeEeCccccc
Confidence 88777632 2222111100 00 11 12332235666676667778777776555
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.55 E-value=23 Score=40.36 Aligned_cols=232 Identities=8% Similarity=0.063 Sum_probs=106.2
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCC
Q 001184 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGR 488 (1130)
Q Consensus 409 ~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~ 488 (1130)
...|..+.+.-.|.+. +|+.|| +..||..+++.+.. .......+|..+.-.-.|+ +..|+.+| |.+.+..|.
T Consensus 164 d~~V~aLv~D~~g~lW-vgT~dG-L~~fd~~~gkalql--~s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G~ 235 (671)
T COG3292 164 DTPVVALVFDANGRLW-VGTPDG-LSYFDAGRGKALQL--ASPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEGW 235 (671)
T ss_pred CccceeeeeeccCcEE-EecCCc-ceEEccccceEEEc--CCCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhhc
Confidence 4578889998888554 577777 77888888765542 1122235677777777776 56666554 666665553
Q ss_pred eeeEec--CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecC---CCccEEEEEEecCCCeEEEeeecC
Q 001184 489 KLFQFE--GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA---PGLWCTTMLYSADGSRLFSCGTSK 563 (1130)
Q Consensus 489 ~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1130)
...... -..+.|..+.- +.. ..+..|+..|..+. ............. .-..|.++....+|..-+...
T Consensus 236 ~~sn~~~~lp~~~I~ll~q--D~q-G~lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~--- 308 (671)
T COG3292 236 RASNWGPMLPSGNILLLVQ--DAQ-GELWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTY--- 308 (671)
T ss_pred cccccCCCCcchheeeeec--ccC-CCEEEeecccceeE-ecCCCCccccccccCCccccccceeeccCCCEeeecc---
Confidence 222211 12233433321 222 24555665555332 2222222221111 112455666666776554431
Q ss_pred CCCcEEEEeeCCCCceeEEEecccCceeEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEc
Q 001184 564 EGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT--TRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN 641 (1130)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s 641 (1130)
.+.++ +..........+....+..+..++..| .+..+--...-|.+.+-+-.+|..+.....-.+ ..|+.+.+.
T Consensus 309 --~giv~-~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg-~nit~~~~d 384 (671)
T COG3292 309 --GGIVR-YLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRG-MNITTTLED 384 (671)
T ss_pred --CceEE-EecchhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccc-cccchhhhc
Confidence 22222 222222222222222221222222222 112222222334455555556665554322221 245555565
Q ss_pred CCCCEEEEEeCCCcEEEEE
Q 001184 642 KEGNLLVVTTADQGIKILA 660 (1130)
Q Consensus 642 ~~~~~l~~~~~dg~i~iw~ 660 (1130)
.++. +-.++...-+..|+
T Consensus 385 ~~g~-lWlgs~q~GLsrl~ 402 (671)
T COG3292 385 SRGR-LWLGSMQNGLSRLD 402 (671)
T ss_pred cCCc-EEEEecccchhhhc
Confidence 5443 44444443333444
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.47 E-value=7.1 Score=48.81 Aligned_cols=147 Identities=12% Similarity=0.258 Sum_probs=95.7
Q ss_pred eCCCcEEEEEeecCeEEEEEecCCCCeeEEEE--------ccCCCeEEEEeCCCcEEEEECCCCcccceeeE---eccCC
Q 001184 894 MEDSTIQIYNVRVDEVKTKLKGHQKHITGLAF--------STNLNILVSSGSDAQLIFWNTDTWEKRKSIAI---QLPAG 962 (1130)
Q Consensus 894 ~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~--------s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~---~~~~~ 962 (1130)
+-|+.+.+|+.+++.....+.+-+..|..|.. -|.=++|...+.--.|.++-+.-.+....... ...-.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 35788999999997777777776667777654 33334555555555677776654333221111 11111
Q ss_pred CCCCCeEEEEEcCCCcEEEEEcCCcEE--EEECCCc---e-e-------------eeeeecC-CCCCCCeEEEEECCCCC
Q 001184 963 KLPVGETRVQFHSDQVRLLVNHETQLA--IYDGSKM---E-C-------------IRQWVPQ-DVLSSPISSAAYSCNSQ 1022 (1130)
Q Consensus 963 ~~~~~v~~~~~s~d~~~l~~~~d~~i~--v~d~~~~---~-~-------------~~~~~~~-~~~~~~v~~v~~s~dg~ 1022 (1130)
..+..+.++....+|+.+.+|.|+.++ +|...+| + + +..+..- ..+..+|..+++....+
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~ 255 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN 255 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence 223678899999999999999998655 2332221 1 0 0111111 23467999999999999
Q ss_pred EEEEEeCCCcEEEEeCCC
Q 001184 1023 LIYATFTDGSIGVFDADS 1040 (1130)
Q Consensus 1023 ~l~t~~~Dg~i~vwd~~~ 1040 (1130)
.|.+-++.|+|.+||+..
T Consensus 256 IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 256 ILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeeeeccCceEEEEEccC
Confidence 999999999999999987
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=92.25 E-value=21 Score=39.35 Aligned_cols=188 Identities=15% Similarity=0.177 Sum_probs=105.7
Q ss_pred EEEEEcCCCcEEEEecCCCeeeEecCCCcCEEEEeec--ccCCccE--EEEEe-cC---CcEEEEEccCCccee-eecC-
Q 001184 470 CIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPH--QKENIHF--IFSTA-VD---GKIKAWLYDNVGSRV-DYDA- 539 (1130)
Q Consensus 470 ~l~s~s~d~~v~iwd~~~~~~~~~~~h~~~v~~~~~~--~~~~~~~--l~s~s-~d---g~i~vwd~~~~~~~~-~~~~- 539 (1130)
+++...+++-+.+||+.|+.+..+. .++++.+.+. ..-++.. |+.++ .+ .+|++|.++...... .+..
T Consensus 70 lIigTdK~~GL~VYdL~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~~ 147 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDLDGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTDP 147 (381)
T ss_dssp EEEEEETTTEEEEEETTS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CBT
T ss_pred eEEEEeCCCCEEEEcCCCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCCC
Confidence 6788888899999999999998885 2455544432 1112222 33443 32 469999887432222 2221
Q ss_pred ------CCccEEEEEEe--c-CCCeEEEeeecCCCCcEEEEeeCC---CC----ceeEEEecccCceeEEEEEcCCCCEE
Q 001184 540 ------PGLWCTTMLYS--A-DGSRLFSCGTSKEGDSHLVEWNES---EG----ALKRTYIGFRKKSAGVVQFDTTRNRI 603 (1130)
Q Consensus 540 ------~~~~v~~~~~s--~-~~~~l~~~~~~~~~~~~i~~wd~~---~~----~~~~~~~~~~~~~v~~~~~~~~~~~l 603 (1130)
.-..++.+|+- + +|.+.+.... .+|.+..|.+. .+ ++++.|.... .+..|.......+|
T Consensus 148 ~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~---k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGCVVDDe~g~L 222 (381)
T PF02333_consen 148 AAPIATDLSEPYGLCLYRSPSTGALYAFVNG---KDGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGCVVDDETGRL 222 (381)
T ss_dssp TC-EE-SSSSEEEEEEEE-TTT--EEEEEEE---TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEEEEETTTTEE
T ss_pred CcccccccccceeeEEeecCCCCcEEEEEec---CCceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEEEEecccCCE
Confidence 11236677763 3 4665554442 25666666553 33 4567776533 57778888888899
Q ss_pred EEEeCCCcEEEEeCCCC-----ceeEEEeccCCCCCcceEEEc--CCC--CEEEEEeCCCcEEEEEcCCC
Q 001184 604 LAAGEDNQIKFWDMDNV-----NMLTSTEAEGGLPSLPRLRFN--KEG--NLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 604 ~~~~~dg~i~vwd~~~~-----~~~~~~~~~~~~~~i~~v~~s--~~~--~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+.+-++.-|.-|+.+.. +.+.......-...+-.+++- .++ -+|++.-.+++..+|+....
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 99999988888887632 222222222222345566653 333 34555556778999997643
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=92.22 E-value=23 Score=39.78 Aligned_cols=151 Identities=9% Similarity=0.090 Sum_probs=86.1
Q ss_pred EEEEEeCCCCcEEEEEeCCCcEE-EEEeecC--eEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccce
Q 001184 878 TFLAFHPQDNNIIAIGMEDSTIQ-IYNVRVD--EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS 954 (1130)
Q Consensus 878 ~~l~~sp~~~~~lasg~~dg~v~-iwd~~~~--~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~ 954 (1130)
..+..++ ++.+++++. .|.+. -||--.. +.+ . ......++++.|.+++..++++ .+|.+ +|..+.++.-..
T Consensus 242 ~~v~~~~-dG~~~~vg~-~G~~~~s~d~G~~~W~~~-~-~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~ 315 (398)
T PLN00033 242 STVNRSP-DGDYVAVSS-RGNFYLTWEPGQPYWQPH-N-RASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEED 315 (398)
T ss_pred eeEEEcC-CCCEEEEEC-CccEEEecCCCCcceEEe-c-CCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccc
Confidence 3445566 677776664 34433 3332111 111 1 2234568999999998877655 56654 444444321110
Q ss_pred -eeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcE
Q 001184 955 -IAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSI 1033 (1130)
Q Consensus 955 -~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i 1033 (1130)
.............+..+.|.+++..++++..|.+.... ..|+.-.............+.+.|.++++.+++|. +|.|
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~-~G~i 393 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGN-DGVL 393 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeC-CcEE
Confidence 01111111122458889999999999999888766654 44544333332222246789999988877776654 8887
Q ss_pred EEE
Q 001184 1034 GVF 1036 (1130)
Q Consensus 1034 ~vw 1036 (1130)
.-|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 765
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.06 E-value=1.9 Score=47.59 Aligned_cols=93 Identities=14% Similarity=0.089 Sum_probs=61.7
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEe---------CCCccc--ccccCCCcccccCCCCCceeeeEEEEEcCCC--C
Q 001184 1009 SSPISSAAYSCNSQLIYATFTDGSIGVFD---------ADSLRL--RCRIAPSAYMSQASPNSQTVFPLVVTSHPQE--P 1075 (1130)
Q Consensus 1009 ~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd---------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 1075 (1130)
.-.|..+..++.|..++.++.+|.+.++= ++.|+. .|+...-. ......+.++....++|+|+. .
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~--~~~ftss~~ltl~Qa~WHP~S~~D 180 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVA--ERFFTSSTSLTLKQAAWHPSSILD 180 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeeccc--ceeeccCCceeeeeccccCCccCC
Confidence 44678888999999999999999766553 223322 22221100 000012245777889999974 4
Q ss_pred CEEEEEeCCCcEEEEeCCCCccCCcccc
Q 001184 1076 NQLAVGLTDGSVKVIEPSETERKWGVAV 1103 (1130)
Q Consensus 1076 ~~l~s~~~Dg~v~vW~~~~~~~~w~~~~ 1103 (1130)
..|+.-+.|..|++|++++...-|-...
T Consensus 181 ~hL~iL~sdnviRiy~lS~~telylqpg 208 (741)
T KOG4460|consen 181 PHLVLLTSDNVIRIYSLSEPTELYLQPG 208 (741)
T ss_pred ceEEEEecCcEEEEEecCCcchhhccCC
Confidence 5677778899999999999988884433
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=91.93 E-value=6.5 Score=44.18 Aligned_cols=148 Identities=10% Similarity=0.044 Sum_probs=79.5
Q ss_pred CCeEEEEEeCCCCcEEEEEe-----------CCC-cEEEEEeec--Ce--EEEEEecCCCCeeEEEEccCCCeEEEEeCC
Q 001184 875 PASTFLAFHPQDNNIIAIGM-----------EDS-TIQIYNVRV--DE--VKTKLKGHQKHITGLAFSTNLNILVSSGSD 938 (1130)
Q Consensus 875 ~~i~~l~~sp~~~~~lasg~-----------~dg-~v~iwd~~~--~~--~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D 938 (1130)
.....|+|.+ +++++++-. ..+ .|.+++-.+ ++ ....+.........|++.++| .++ ++..
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence 3466788888 677666542 223 676665432 32 223444344456889999998 444 4444
Q ss_pred CcEEEEECCCCccc----ceeeEeccCC--CCCCCeEEEEEcCCCcEEEE-EcC-------------------CcEEEEE
Q 001184 939 AQLIFWNTDTWEKR----KSIAIQLPAG--KLPVGETRVQFHSDQVRLLV-NHE-------------------TQLAIYD 992 (1130)
Q Consensus 939 g~i~vwd~~~~~~~----~~~~~~~~~~--~~~~~v~~~~~s~d~~~l~~-~~d-------------------~~i~v~d 992 (1130)
...++.+.+..... .......... ........++|.|||.+.++ +.. +.+.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 43334354432111 1111112221 01245678999999987665 311 3355555
Q ss_pred CCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeC
Q 001184 993 GSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFT 1029 (1130)
Q Consensus 993 ~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~ 1029 (1130)
..+++. ..+... -.....++|+++|+++++-..
T Consensus 171 pdg~~~-e~~a~G---~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 171 PDGGKL-RVVAHG---FQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred cCCCeE-EEEecC---cCCCccceECCCCCEEEEccC
Confidence 554443 222222 245578999999998776543
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=91.84 E-value=8.2 Score=43.53 Aligned_cols=204 Identities=14% Similarity=0.089 Sum_probs=107.7
Q ss_pred EEEEeCCCcEEEEEeecCeEEEEEecC--CCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCC
Q 001184 890 IAIGMEDSTIQIYNVRVDEVKTKLKGH--QKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVG 967 (1130)
Q Consensus 890 lasg~~dg~v~iwd~~~~~~~~~l~~h--~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 967 (1130)
+.++..+|.|.-.|..+++.+-....- ...+..-.+..+|+ ++.++.++.++..|..+++..-...... . ..
T Consensus 71 v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~----~-~~ 144 (370)
T COG1520 71 VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG----S-PY 144 (370)
T ss_pred EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC----C-eE
Confidence 444567777777777777654322111 12222233333665 7778888888888887766533322221 0 11
Q ss_pred eEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeC--CCcEEEEeCCCccccc
Q 001184 968 ETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFT--DGSIGVFDADSLRLRC 1045 (1130)
Q Consensus 968 v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~--Dg~i~vwd~~~~~~~~ 1045 (1130)
...-....++..+..+.++.+.-.+..+|+..-...........+..--...++ .++.+.. ++.+.-.|..+|...-
T Consensus 145 ~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w 223 (370)
T COG1520 145 YASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKW 223 (370)
T ss_pred EecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEee
Confidence 223334445555555567888888888888766544321001111111112233 4444544 5667777888888765
Q ss_pred ccCCCcccccCCC-CCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCccCCccccc
Q 001184 1046 RIAPSAYMSQASP-NSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWGVAVP 1104 (1130)
Q Consensus 1046 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~~~w~~~~p 1104 (1130)
............. ....+..-.+. -+.-+..++.++.+.-.+..+++.+|...++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~v~----v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 224 SQKVSQTIGRTAISTTPAVDGGPVY----VDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeeeecccCcccccccccccCceEE----ECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 5432221111000 00011111111 1223467777888999999999999988887
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=91.66 E-value=27 Score=39.32 Aligned_cols=203 Identities=12% Similarity=0.031 Sum_probs=106.2
Q ss_pred EecCCCEEEEEeCCeEEEEECCCceeEEEEeCCC--CCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCC-
Q 001184 841 LSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPP--PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQ- 917 (1130)
Q Consensus 841 ~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~- 917 (1130)
..-||+.++...+|.|.-.|..++..+....... ..+..-.+.. +|+ ++.++.+|.++.+|..+|+.+-......
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence 4456666666568888888888887664433221 2233333333 555 6678899988889988898887776554
Q ss_pred CCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEc--CCcEEEEECCC
Q 001184 918 KHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--ETQLAIYDGSK 995 (1130)
Q Consensus 918 ~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d~~i~v~d~~~ 995 (1130)
..+..-....++ .+...+.++.+.-.+..+++..-....... ....+..-....++...+... ++.+.-.|..+
T Consensus 143 ~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~---~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~ 218 (370)
T COG1520 143 PYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAP---LSLSIYGSPAIASGTVYVGSDGYDGILYALNAED 218 (370)
T ss_pred eEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCc---cccccccCceeecceEEEecCCCcceEEEEEccC
Confidence 112222222233 233333566666666666554222111110 001111111133444444444 45677777777
Q ss_pred ceeeeeeecCCCCC-CCeEEEEECC-----CCCEEEEEeCCCcEEEEeCCCcccccccCC
Q 001184 996 MECIRQWVPQDVLS-SPISSAAYSC-----NSQLIYATFTDGSIGVFDADSLRLRCRIAP 1049 (1130)
Q Consensus 996 ~~~~~~~~~~~~~~-~~v~~v~~s~-----dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1049 (1130)
|............. ..+....... .+.-+..++.++.+...|..+|+.+-+...
T Consensus 219 G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 219 GTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred CcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 87776632221000 1110011111 122235566678888899999988877664
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=91.65 E-value=17 Score=40.84 Aligned_cols=148 Identities=11% Similarity=0.117 Sum_probs=87.6
Q ss_pred ceeEEEEecCCCEEEEEeCCeEEE-EECCCcee-EEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCe----
Q 001184 835 VVPCVALSKNDSYVMSAGGGKVSL-FNMMNFKV-MTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE---- 908 (1130)
Q Consensus 835 ~i~~l~~s~dg~~la~~~dg~i~i-wd~~~~~~-~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~---- 908 (1130)
....+..++||.+++++..|.+.. ||-- ... ...-......++.+.+.+ ++.+++++ .+|.+.. ....++
T Consensus 240 sf~~v~~~~dG~~~~vg~~G~~~~s~d~G-~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l~~-S~d~G~~~~~ 315 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSSRGNFYLTWEPG-QPYWQPHNRASARRIQNMGWRA-DGGLWLLT-RGGGLYV-SKGTGLTEED 315 (398)
T ss_pred ceeeEEEcCCCCEEEEECCccEEEecCCC-CcceEEecCCCccceeeeeEcC-CCCEEEEe-CCceEEE-ecCCCCcccc
Confidence 355567889999999998876443 4432 111 111122345688999998 77777655 5666543 334443
Q ss_pred -EEEEEecC--CCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcC
Q 001184 909 -VKTKLKGH--QKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHE 985 (1130)
Q Consensus 909 -~~~~l~~h--~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d 985 (1130)
........ ...+.++.|.+++.. +.++.+|.+.... +.++. ..........+.....+.|.++++.++++.+
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~-~a~G~~G~v~~s~-D~G~t---W~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~ 390 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEA-WAAGGSGILLRST-DGGKS---WKRDKGADNIAANLYSVKFFDDKKGFVLGND 390 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcE-EEEECCCcEEEeC-CCCcc---eeEccccCCCCcceeEEEEcCCCceEEEeCC
Confidence 22222221 234889999987665 4556677666553 33221 1111111222356789999999999999988
Q ss_pred CcEEEE
Q 001184 986 TQLAIY 991 (1130)
Q Consensus 986 ~~i~v~ 991 (1130)
|.|.-|
T Consensus 391 G~il~~ 396 (398)
T PLN00033 391 GVLLRY 396 (398)
T ss_pred cEEEEe
Confidence 887655
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.63 E-value=0.059 Score=58.45 Aligned_cols=238 Identities=13% Similarity=0.120 Sum_probs=134.2
Q ss_pred EEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEE
Q 001184 772 RLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSA 851 (1130)
Q Consensus 772 ~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~ 851 (1130)
...+.+.+.-++.++-+..+..||-.. ..... ....+....+++..+|..+++.
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~ag----------------------q~~le----~n~tg~aldm~wDkegdvlavl 92 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAG----------------------QVILE----LNPTGKALDMAWDKEGDVLAVL 92 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhc----------------------ceecc----cCCchhHhhhhhccccchhhhh
Confidence 345566666677777776766665211 11111 0223445567777788777665
Q ss_pred e--CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCC
Q 001184 852 G--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNL 929 (1130)
Q Consensus 852 ~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg 929 (1130)
. .+.+.+||+.+......-.+....-.-+.|++ +...++.|...|.+.||+..+.+.+...-.|...++++++.+.+
T Consensus 93 Aek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd 171 (615)
T KOG2247|consen 93 AEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED 171 (615)
T ss_pred hhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc
Confidence 5 68899999976432221111222223378999 88899999999999999998887766666699999999999876
Q ss_pred CeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeE--EE---EEcCCCcEEEEEcCCcEEE-----EECCCceee
Q 001184 930 NILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGET--RV---QFHSDQVRLLVNHETQLAI-----YDGSKMECI 999 (1130)
Q Consensus 930 ~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~--~~---~~s~d~~~l~~~~d~~i~v-----~d~~~~~~~ 999 (1130)
+.+.++.|..+.+-...+.... ....+..+.... .+ .|..-|..+..--.+...+ -..+....+
T Consensus 172 -~vil~dcd~~L~v~~qegeta~-----ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval 245 (615)
T KOG2247|consen 172 -YVILCDCDNTLSVTTQEGETAS-----LTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVAL 245 (615)
T ss_pred -eeeecCcHHHHHHhhhccceee-----eeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccce
Confidence 5566666665544333321110 111111111111 11 1222233333211111111 111111122
Q ss_pred eeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCccccccc
Q 001184 1000 RQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRI 1047 (1130)
Q Consensus 1000 ~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~ 1047 (1130)
.+... .+.+.|+.|--||.++ -+.+-|.|..-..+++++...+
T Consensus 246 -~fq~~---~gni~cyrwylDg~i~-igf~ag~iV~iS~h~aeLgaef 288 (615)
T KOG2247|consen 246 -QFQEK---YGNIHCYRWYLDGYIL-IGFDAGYIVSISAHNAELGAEF 288 (615)
T ss_pred -Eeeec---CCceeEEEEecccccc-ccccceeEEEEeccchHHHHHH
Confidence 34333 5678889998888644 4666677777778888776554
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=91.60 E-value=5.9 Score=35.91 Aligned_cols=115 Identities=14% Similarity=0.084 Sum_probs=70.2
Q ss_pred EcCCCcEEEE-EcCCcEEEEECCCce--------eeeeeecCCCCCCCeEEEEECC-----CCCEEEEEeCCCcEEEEeC
Q 001184 973 FHSDQVRLLV-NHETQLAIYDGSKME--------CIRQWVPQDVLSSPISSAAYSC-----NSQLIYATFTDGSIGVFDA 1038 (1130)
Q Consensus 973 ~s~d~~~l~~-~~d~~i~v~d~~~~~--------~~~~~~~~~~~~~~v~~v~~s~-----dg~~l~t~~~Dg~i~vwd~ 1038 (1130)
|......|++ +..++|.|++..... .+..+.. +..|++++--+ +...|+.|+ ...+..||+
T Consensus 6 fDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi----n~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 6 FDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI----NQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred eCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC----CCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 3333334444 567778888765322 2333322 45777775433 334777776 678999999
Q ss_pred CCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCccCCccc
Q 001184 1039 DSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWGVA 1102 (1130)
Q Consensus 1039 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~~~w~~~ 1102 (1130)
.....+..... + ..+.++.+.-....+.-|+..+..+.|.-+|....|..|.+-
T Consensus 81 ~~N~d~Fyke~----~------DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 81 ENNSDLFYKEV----P------DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred ccCchhhhhhC----c------cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEec
Confidence 98776544431 1 224555454333334456666668999999999999999763
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.42 Score=55.96 Aligned_cols=163 Identities=18% Similarity=0.239 Sum_probs=94.3
Q ss_pred CCCCEEEEEEe----cCCCeEEEEEeCcCeEEEEeCCC--CceeecccceeeeccccccceeeeeecCCCccEEEEEEcC
Q 001184 346 QGSSVVSMDFH----PFHHTLLVVGCGDGEITLWDVGL--RERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1130)
Q Consensus 346 h~~~V~~v~fs----pdg~~llasg~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 419 (1130)
..+.|-.++|- |.+.. .-|...|||+.- |+......++ +...-...+.-|.|.|
T Consensus 131 f~G~v~dl~fah~~~pk~~~------~vg~lfVy~vd~l~G~iq~~l~v~--------------~~~p~gs~~~~V~wcp 190 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGRR------LVGELFVYDVDVLQGEIQPQLEVT--------------PITPYGSDPQLVSWCP 190 (1283)
T ss_pred CCCCcccccccccCChHHHH------HhhhhheeehHhhccccccceEEe--------------ecCcCCCCcceeeecc
Confidence 55677777774 33331 225788998763 4433221221 1222223334455544
Q ss_pred ---CCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEE-----------ecCCCceEEEEEcCCCcEEEEe-
Q 001184 420 ---DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAF-----------SYPNKQLCIVTCGDDKLIRVWD- 484 (1130)
Q Consensus 420 ---dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~-----------s~d~~~l~l~s~s~d~~v~iwd- 484 (1130)
+.-++..+-.+++|++.++..... ..+.+|...+.+++| ||||+ .++.++.||.+++|.
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALR----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFYQI 264 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHH----HHHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccceeee
Confidence 667888888889998877766432 135568887777664 89999 899999999999998
Q ss_pred -cCCC----eeeEecCCCc-CEEEEeecccC-------CccEEEEEec-CCcEEEEEccCCcce
Q 001184 485 -LSGR----KLFQFEGHEA-PVYSVCPHQKE-------NIHFIFSTAV-DGKIKAWLYDNVGSR 534 (1130)
Q Consensus 485 -~~~~----~~~~~~~h~~-~v~~~~~~~~~-------~~~~l~s~s~-dg~i~vwd~~~~~~~ 534 (1130)
.+|+ |++..+.|++ +-.|.-++... --.+++++++ +..+++|.-..-++.
T Consensus 265 yi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 265 YITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 6664 4556667763 22222222110 0023444443 345788865544444
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=91.45 E-value=25 Score=38.61 Aligned_cols=149 Identities=14% Similarity=0.156 Sum_probs=87.0
Q ss_pred CCCceeEEEEe-cCCCEEEEEeCCe------EEEEECCC--c-----eeE--EEEeCCCC--------CeEEEEEeCCCC
Q 001184 832 AEDVVPCVALS-KNDSYVMSAGGGK------VSLFNMMN--F-----KVM--TTFMSPPP--------ASTFLAFHPQDN 887 (1130)
Q Consensus 832 ~~~~i~~l~~s-~dg~~la~~~dg~------i~iwd~~~--~-----~~~--~~~~~~~~--------~i~~l~~sp~~~ 887 (1130)
.-+.+..+.+. .++.+++...+|. +..+++.. + ... ..+....+ ..-+|++.+ ++
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g 96 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DG 96 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CC
Confidence 35567888998 4566666665565 55555443 1 111 11111111 234788866 78
Q ss_pred cEEEEEeCC------CcEEEEEeecCeEEEEEe---------------cCCCCeeEEEEccCCCeEEEEeC-----CC--
Q 001184 888 NIIAIGMED------STIQIYNVRVDEVKTKLK---------------GHQKHITGLAFSTNLNILVSSGS-----DA-- 939 (1130)
Q Consensus 888 ~~lasg~~d------g~v~iwd~~~~~~~~~l~---------------~h~~~V~~l~~s~dg~~L~s~s~-----Dg-- 939 (1130)
.++++.-.+ ..|+.++.. |+.+..+. ......-+|+++|||+.|+++.. |+
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence 877776666 678888866 65544431 13345789999999997776644 22
Q ss_pred c-------EEEEECCCCc---ccceeeEeccCC---CCCCCeEEEEEcCCCcEEEE
Q 001184 940 Q-------LIFWNTDTWE---KRKSIAIQLPAG---KLPVGETRVQFHSDQVRLLV 982 (1130)
Q Consensus 940 ~-------i~vwd~~~~~---~~~~~~~~~~~~---~~~~~v~~~~~s~d~~~l~~ 982 (1130)
. ++++..+... ............ .....++.+.+-+++++|+.
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 1 4555544322 222333332210 13478899999999998887
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.18 E-value=4.6 Score=39.30 Aligned_cols=188 Identities=15% Similarity=0.133 Sum_probs=100.9
Q ss_pred CCcEEEEEeCC--CcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEE-EeCCCcEEEEECCCCcccceeeEeccCC
Q 001184 886 DNNIIAIGMED--STIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVS-SGSDAQLIFWNTDTWEKRKSIAIQLPAG 962 (1130)
Q Consensus 886 ~~~~lasg~~d--g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s-~s~Dg~i~vwd~~~~~~~~~~~~~~~~~ 962 (1130)
++.++.+.+.- ..|++||+.+++.+..-.-....+..=-...-|.++.. .=.+|.-..+|.++.+.......
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y----- 129 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY----- 129 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-----
Confidence 45666666543 36999999999877654322222221111111222222 22477778888887554332211
Q ss_pred CCCCCeEEEEEcCCCcEEEEE-cCCcEEEEECCCceeeeeeecCCC--CCCCeEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 001184 963 KLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKMECIRQWVPQDV--LSSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039 (1130)
Q Consensus 963 ~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~--~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~ 1039 (1130)
++.- .....|+.-|..+ ...+++.-|.++............ .-..++.+.|- ||.+.|-.=.+..|..-+.+
T Consensus 130 --~GeG--WgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~ 204 (262)
T COG3823 130 --EGEG--WGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPD 204 (262)
T ss_pred --CCcc--eeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCC
Confidence 1222 2333444445543 345566666665544433322100 01223344443 67766666667778888999
Q ss_pred CcccccccCCCcccccCCCCCcee-eeEEEEEcCCCCCEEEEEeC
Q 001184 1040 SLRLRCRIAPSAYMSQASPNSQTV-FPLVVTSHPQEPNQLAVGLT 1083 (1130)
Q Consensus 1040 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~s~~~ 1083 (1130)
+|+....+..+.........+... ....+++.|+.++++++|=.
T Consensus 205 sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~ 249 (262)
T COG3823 205 SGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKL 249 (262)
T ss_pred CCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCc
Confidence 999888887665544333333322 22357888876677777643
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.02 E-value=47 Score=40.88 Aligned_cols=105 Identities=11% Similarity=0.170 Sum_probs=67.6
Q ss_pred EEEecCCCEEEEEeCCeEEEEECCCceeEEEEe--CCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEee--cCeEEEEEe
Q 001184 839 VALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFM--SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR--VDEVKTKLK 914 (1130)
Q Consensus 839 l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~--~~~~~~~l~ 914 (1130)
.|+.|-..++.+|-...+++||+-..++++... .....|+.+++ .+..+++|+..-.|.++..+ ..+++ .+.
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~~~~y~~~~n~l~-~fa 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVHFVRYRREDNQLI-VFA 1014 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee---cceEEEEeeccceEEEEEEecCCCeEE-EEe
Confidence 455677778888889999999998777665543 23456777777 55678888877667655444 34433 333
Q ss_pred cC--CCCeeEEEEccCCCeEEEEeCCCcEEEEECCC
Q 001184 915 GH--QKHITGLAFSTNLNILVSSGSDAQLIFWNTDT 948 (1130)
Q Consensus 915 ~h--~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~ 948 (1130)
.. ...|+++.+- |...+|.++.=|.+.+-.+..
T Consensus 1015 dD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred CCCccceeeEEEEe-cCCceeeccccCcEEEEECCC
Confidence 22 2235665554 455777777777776655543
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=90.68 E-value=1.5 Score=43.03 Aligned_cols=31 Identities=32% Similarity=0.570 Sum_probs=25.6
Q ss_pred ccEEEEEEcCCC------CEEEEEeCCCeEEEEEecC
Q 001184 410 ISVSRVAWSPDG------NFIGVAFTKHLIHLYTYQG 440 (1130)
Q Consensus 410 ~~V~~v~~spdg------~~las~~~d~~i~vwd~~~ 440 (1130)
..|.+++|||-| -+||+.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 379999999954 2788899999999998654
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.55 E-value=19 Score=40.98 Aligned_cols=276 Identities=16% Similarity=0.086 Sum_probs=134.4
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
--...|.++.|.-.|. +-.|+.|| +..||..+++.+.... .....+|..+.-+-.|+ |
T Consensus 162 l~d~~V~aLv~D~~g~--lWvgT~dG-L~~fd~~~gkalql~s------------------~~~dk~I~al~~d~qg~-L 219 (671)
T COG3292 162 LKDTPVVALVFDANGR--LWVGTPDG-LSYFDAGRGKALQLAS------------------PPLDKAINALIADVQGR-L 219 (671)
T ss_pred ccCccceeeeeeccCc--EEEecCCc-ceEEccccceEEEcCC------------------CcchhhHHHHHHHhcCc-E
Confidence 3567899999999996 45677665 5677877777654210 01124555555555554 5
Q ss_pred EEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEec-CCC--cCEE
Q 001184 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE-GHE--APVY 501 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~-~h~--~~v~ 501 (1130)
-+|+.+| |.+.+.++.+... .. ..-..+.|..+.-..+|. +-.|+..|..+.--.......... -|. ..|.
T Consensus 220 WVGTdqG-v~~~e~~G~~~sn-~~-~~lp~~~I~ll~qD~qG~---lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vn 293 (671)
T COG3292 220 WVGTDQG-VYLQEAEGWRASN-WG-PMLPSGNILLLVQDAQGE---LWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVN 293 (671)
T ss_pred EEEeccc-eEEEchhhccccc-cC-CCCcchheeeeecccCCC---EEEeecccceeEecCCCCccccccccCCcccccc
Confidence 5677777 7777766522111 00 001122333333333333 334444443222112222222221 121 2233
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEec--CCCeEEEeeecCCCCcEEEEeeCCCCce
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSA--DGSRLFSCGTSKEGDSHLVEWNESEGAL 579 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1130)
++-. +.+| -|.+++.+|.+++-+-+-..........+..+...+..| .+..+-... ..+.+.+-+..+|..
T Consensus 294 sL~~--D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~n----s~g~L~van~stG~~ 366 (671)
T COG3292 294 SLWL--DTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLN----SIGELMVANGSTGEL 366 (671)
T ss_pred ceee--ccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeecc----ccceEEEecCCCCcE
Confidence 3322 3332 466666666665533221111111111111111111222 111111111 134455566667777
Q ss_pred eEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEE
Q 001184 580 KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN-VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKI 658 (1130)
Q Consensus 580 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~i 658 (1130)
++.........++.+++..+ ..+-.|+...-+-.|+..+ +........ -...+|..+.-.|+++ |..|+.+|.++.
T Consensus 367 v~sv~q~Rg~nit~~~~d~~-g~lWlgs~q~GLsrl~n~n~~avlde~ag-l~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 367 VRSVHQLRGMNITTTLEDSR-GRLWLGSMQNGLSRLDNKNEWAVLDEDAG-LPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred EEEeeeccccccchhhhccC-CcEEEEecccchhhhccCCcccccccccC-CcccceeeeeecCCCC-EEEeccCCeEec
Confidence 77766556556777777774 4566666665566677666 333322222 2233677787788887 777888887654
|
|
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=90.51 E-value=26 Score=41.51 Aligned_cols=166 Identities=11% Similarity=0.092 Sum_probs=87.3
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeee-ecCCCCeeEEEEecC-----CCceEEEEEc-C-C-Cc
Q 001184 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEI-DAHVGGVNDLAFSYP-----NKQLCIVTCG-D-D-KL 479 (1130)
Q Consensus 409 ~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~-~~h~~~V~~i~~s~d-----~~~l~l~s~s-~-d-~~ 479 (1130)
.+.|..+.|.++++.+++...+|.|.+||...+...... .+ ..+...|..=.|-++ +..++++.+. . + -.
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~-~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVP-QLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEecccccccccc-ccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence 568999999999999999999999999999333211100 11 122222222234332 3333333333 1 2 24
Q ss_pred EEEEec--CCCeeeEec---CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCC-----C-ccEEEEE
Q 001184 480 IRVWDL--SGRKLFQFE---GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP-----G-LWCTTML 548 (1130)
Q Consensus 480 v~iwd~--~~~~~~~~~---~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-----~-~~v~~~~ 548 (1130)
.+++.. ++..+..+. -+........|... +| .|+-- .+++|.+|.+...+....+... . ..+.++.
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G-~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FG-KLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEe-CC-EEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence 566664 455554443 12222222222222 22 23333 6789999988776544433222 1 1233443
Q ss_pred EecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEe
Q 001184 549 YSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYI 584 (1130)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1130)
--...+.|++. +..|++.|+.-...+..+.
T Consensus 285 ~~s~nRvLLs~------~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 285 PPSPNRVLLSV------NNKIYLLDLKFESILSEFE 314 (670)
T ss_pred cCCCCeEEEEc------CCEEEEEeehhhhhhhhhh
Confidence 33334444444 6789999987555554444
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=90.46 E-value=0.84 Score=31.85 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=26.2
Q ss_pred CCEEEEEEecCCC--eEEEEEeCcCeEEEEeCCC
Q 001184 348 SSVVSMDFHPFHH--TLLVVGCGDGEITLWDVGL 379 (1130)
Q Consensus 348 ~~V~~v~fspdg~--~llasg~~dg~i~iwd~~~ 379 (1130)
+.|.+++|||+.. .||+..-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3689999998553 4788888889999999985
|
It contains a characteristic DLL sequence motif. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=90.34 E-value=16 Score=40.27 Aligned_cols=164 Identities=13% Similarity=0.137 Sum_probs=92.7
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCc------EEEEEeec--C--eEE-----EEEecCCC--------CeeEEEEccCCC
Q 001184 874 PPASTFLAFHPQDNNIIAIGMEDST------IQIYNVRV--D--EVK-----TKLKGHQK--------HITGLAFSTNLN 930 (1130)
Q Consensus 874 ~~~i~~l~~sp~~~~~lasg~~dg~------v~iwd~~~--~--~~~-----~~l~~h~~--------~V~~l~~s~dg~ 930 (1130)
-+....+.+.++++.+++ .+++|. ++.+++.. + ..+ ..+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~~~a-vSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYA-VSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEE-EECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 355788889874555554 455666 55555543 1 111 11222222 234788888888
Q ss_pred eEEEEeCC------CcEEEEECCCCcccceee--Eec-------cCCCCCCCeEEEEEcCCCcEEEEE------cCC--c
Q 001184 931 ILVSSGSD------AQLIFWNTDTWEKRKSIA--IQL-------PAGKLPVGETRVQFHSDQVRLLVN------HET--Q 987 (1130)
Q Consensus 931 ~L~s~s~D------g~i~vwd~~~~~~~~~~~--~~~-------~~~~~~~~v~~~~~s~d~~~l~~~------~d~--~ 987 (1130)
++++.-.+ ..|..++.+ ++...... ... ...........++++|||+.|.+. .|+ .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88887777 778888876 44433321 111 122344688999999999955441 122 1
Q ss_pred -------EE--EEECCC-ceeeeeeecCCC------CCCCeEEEEECCCCCEEEEEeC-----CCcEEEEeCC
Q 001184 988 -------LA--IYDGSK-MECIRQWVPQDV------LSSPISSAAYSCNSQLIYATFT-----DGSIGVFDAD 1039 (1130)
Q Consensus 988 -------i~--v~d~~~-~~~~~~~~~~~~------~~~~v~~v~~s~dg~~l~t~~~-----Dg~i~vwd~~ 1039 (1130)
++ .||..+ +.....+.-... ....|+.+.+-+|+++|+.-=. ...++|+.+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 44 455554 333333322211 2568899999999997765322 3455666444
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.16 E-value=3.2 Score=51.56 Aligned_cols=166 Identities=14% Similarity=0.191 Sum_probs=98.1
Q ss_pred ccceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEE
Q 001184 337 PRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVA 416 (1130)
Q Consensus 337 ~~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 416 (1130)
|.+++..+.|...-+.+-+-|.=.+.-+| .|..+.+|+++++.... .+.+-+..|..|.
T Consensus 68 P~el~eq~~~~~~~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~-------------------~~d~~shtIl~V~ 126 (1311)
T KOG1900|consen 68 PDELLEQFSNIECKTDMGIFPEIGRAWIT--IDNNLFLWNYESDNELA-------------------EYDGLSHTILKVG 126 (1311)
T ss_pred CHHHHHHhcCcceeeeeccchhhcceEEE--eCCeEEEEEcCCCCccc-------------------cccchhhhheeee
Confidence 44455555566666666666654443443 48899999999855433 2334444555554
Q ss_pred E--------cCCCCEEEEEeCCCeEEEEEecCCcccee------eeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001184 417 W--------SPDGNFIGVAFTKHLIHLYTYQGSNDLCQ------SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRV 482 (1130)
Q Consensus 417 ~--------spdg~~las~~~d~~i~vwd~~~~~~~~~------~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~i 482 (1130)
. -|.=+++.+...--.|.++-+.-.+.... ..++....-.|+++....+|+ .+++| .|| .+
T Consensus 127 LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~~G-~dg--~l 201 (1311)
T KOG1900|consen 127 LVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFFAG-RDG--NL 201 (1311)
T ss_pred eecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEEee-cCC--CE
Confidence 3 33444555555555677776543221111 112223355789999888888 55554 555 44
Q ss_pred Ee-----cCC---C-e----------------eeEec-CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccC
Q 001184 483 WD-----LSG---R-K----------------LFQFE-GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN 530 (1130)
Q Consensus 483 wd-----~~~---~-~----------------~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~ 530 (1130)
|. .+| + + +..+. .+..+|..+.+..+ ..++++-+..|+|.+||+..
T Consensus 202 yEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S--R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 202 YELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS--RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred EEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc--cceeeeeccCceEEEEEccC
Confidence 44 111 1 1 11223 56779999988543 36899999999999999875
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=90.06 E-value=4.8 Score=44.50 Aligned_cols=145 Identities=12% Similarity=0.066 Sum_probs=89.9
Q ss_pred CCcEEE-EEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCC--------CeEEEEeCCCcEEEEECCC-Cccccee
Q 001184 886 DNNIIA-IGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNL--------NILVSSGSDAQLIFWNTDT-WEKRKSI 955 (1130)
Q Consensus 886 ~~~~la-sg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg--------~~L~s~s~Dg~i~vwd~~~-~~~~~~~ 955 (1130)
+..+|. .|.....++-.|++.|+.+..+..|..- -+.|.|+. +.|+-.|.. .|.-.|..- +.+ ..
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~-svFrIDPR~~gNK--i~ 552 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDY-SVFRIDPRARGNK--IK 552 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeeccc-ceEEecccccCCc--ee
Confidence 444444 4555667888899999999999988775 46788753 345544443 333334322 111 11
Q ss_pred eEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 001184 956 AIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGV 1035 (1130)
Q Consensus 956 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~v 1035 (1130)
......-.......+..-...|-..+++..|.|++||--.-.....+++. +..|..+..+.+|+++++.+ ..++.+
T Consensus 553 v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~l---G~aIk~idvta~Gk~ilaTC-k~yllL 628 (776)
T COG5167 553 VVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGL---GDAIKHIDVTANGKHILATC-KNYLLL 628 (776)
T ss_pred eeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCccc---ccceeeeEeecCCcEEEEee-cceEEE
Confidence 11111111223444555555665556688999999997644443334333 67999999999999998888 557777
Q ss_pred EeCC
Q 001184 1036 FDAD 1039 (1130)
Q Consensus 1036 wd~~ 1039 (1130)
-|+.
T Consensus 629 ~d~~ 632 (776)
T COG5167 629 TDVP 632 (776)
T ss_pred Eecc
Confidence 7765
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=89.97 E-value=8.7 Score=43.15 Aligned_cols=102 Identities=15% Similarity=0.134 Sum_probs=52.8
Q ss_pred CCEEEEEEecCCCeEEEEEe-----------CcC-eEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEE
Q 001184 348 SSVVSMDFHPFHHTLLVVGC-----------GDG-EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRV 415 (1130)
Q Consensus 348 ~~V~~v~fspdg~~llasg~-----------~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 415 (1130)
.....++|.++|+ |+++-. ..+ .|.+++-.++.-... ...++...-.....+
T Consensus 14 ~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d---------------~~~vfa~~l~~p~Gi 77 (367)
T TIGR02604 14 RNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYD---------------KSNVFAEELSMVTGL 77 (367)
T ss_pred CCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcc---------------eeEEeecCCCCccce
Confidence 4678899999998 455432 123 676776443211110 001222223356889
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEecCCc----cceee-eeeec----CCCCeeEEEEecCCC
Q 001184 416 AWSPDGNFIGVAFTKHLIHLYTYQGSN----DLCQS-LEIDA----HVGGVNDLAFSYPNK 467 (1130)
Q Consensus 416 ~~spdg~~las~~~d~~i~vwd~~~~~----~~~~~-~~~~~----h~~~V~~i~~s~d~~ 467 (1130)
++.++| +++ +......++.|..... ..... ..+.. +......++|.|||.
T Consensus 78 ~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~ 136 (367)
T TIGR02604 78 AVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW 136 (367)
T ss_pred eEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC
Confidence 999999 444 4444433344543211 11111 11222 234578899999997
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=89.92 E-value=35 Score=37.65 Aligned_cols=152 Identities=9% Similarity=0.024 Sum_probs=81.2
Q ss_pred CcCEEEEeecccCCccEEEEEecCCcEEEEEccCCccee-e-ecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeC
Q 001184 497 EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV-D-YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE 574 (1130)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1130)
...+..+.+.+ ++.++ ..+..|.+.. ..+...... . .......++++.+.++++.++++. .|.+.+-..
T Consensus 172 ~g~~~~i~~~~--~g~~v-~~g~~G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-----~G~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSP--DGKYV-AVSSRGNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-----GGQIRFNDP 242 (334)
T ss_pred cceEEEEEECC--CCeEE-EEeCCceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-----CCEEEEccC
Confidence 45677777654 44444 4455565432 112222211 1 123345788999999998877764 455543233
Q ss_pred CCCceeEEEecc---cCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEec-cCCCCCcceEEEcCCCCEEEEE
Q 001184 575 SEGALKRTYIGF---RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA-EGGLPSLPRLRFNKEGNLLVVT 650 (1130)
Q Consensus 575 ~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~i~~v~~s~~~~~l~~~ 650 (1130)
..|..-...... ....+..+.+.+++. ++.++.+|.+. ...+.++.-..... ..-....+.+.|..+++.++ .
T Consensus 243 d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 319 (334)
T PRK13684 243 DDLESWSKPIIPEITNGYGYLDLAYRTPGE-IWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-L 319 (334)
T ss_pred CCCCccccccCCccccccceeeEEEcCCCC-EEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-E
Confidence 344332222111 112466788888766 45555667665 44555555444432 11112467777777666655 5
Q ss_pred eCCCcEEEEE
Q 001184 651 TADQGIKILA 660 (1130)
Q Consensus 651 ~~dg~i~iw~ 660 (1130)
+..|.|.-|+
T Consensus 320 G~~G~il~~~ 329 (334)
T PRK13684 320 GQRGVLLRYV 329 (334)
T ss_pred CCCceEEEec
Confidence 5677777665
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=89.91 E-value=1.2 Score=30.77 Aligned_cols=31 Identities=10% Similarity=0.165 Sum_probs=23.6
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCc--CeEEEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGD--GEITLW 375 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~d--g~i~iw 375 (1130)
.....-.+.+|||||++++.++..+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3556788999999999988888877 777766
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=89.69 E-value=1.3 Score=30.90 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=26.7
Q ss_pred ccEEEEEEcCC-C--CEEEEEeCCCeEEEEEecCC
Q 001184 410 ISVSRVAWSPD-G--NFIGVAFTKHLIHLYTYQGS 441 (1130)
Q Consensus 410 ~~V~~v~~spd-g--~~las~~~d~~i~vwd~~~~ 441 (1130)
++|.++.|||+ + .+||.+-..+.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 46899999985 4 58888888899999999863
|
It contains a characteristic DLL sequence motif. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=89.50 E-value=4.3 Score=48.20 Aligned_cols=174 Identities=12% Similarity=0.147 Sum_probs=94.1
Q ss_pred CCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEE
Q 001184 845 DSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLA 924 (1130)
Q Consensus 845 g~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~ 924 (1130)
+.+++++..+.|.||+......... ..++..+...| .. +...|+.+..|- ..|+ |+.|.
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~----~~p~~~~~t~p---~~--~~~~D~~~s~~p----------~PHt--IN~i~ 107 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPS----RKPCLRFDTKP---EF--TSTPDRLISTWP----------FPHT--INFIK 107 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccc----cccccccccCc---cc--cccccccccCCC----------CCce--eeEEE
Confidence 7888888999999999865332110 11112222222 11 122344333332 1121 33332
Q ss_pred Ec--cCCCeEEEEeCCCcEEEEECCCCc-----c---cce---e--eEeccCCCCCCCeEEEEEc--CCCcEEEEEcC-C
Q 001184 925 FS--TNLNILVSSGSDAQLIFWNTDTWE-----K---RKS---I--AIQLPAGKLPVGETRVQFH--SDQVRLLVNHE-T 986 (1130)
Q Consensus 925 ~s--~dg~~L~s~s~Dg~i~vwd~~~~~-----~---~~~---~--~~~~~~~~~~~~v~~~~~s--~d~~~l~~~~d-~ 986 (1130)
.. -+...|+.+..||.|.+|.++.-. . ... . .........+..+..++++ ...+++|+|++ .
T Consensus 108 v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~ 187 (717)
T PF08728_consen 108 VGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQ 187 (717)
T ss_pred ecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCc
Confidence 22 234578888888999999764310 0 000 0 0000111223577888998 88889998754 4
Q ss_pred cEEEEECCCceeeeeeecCCCCCCCeEEEEECCCC---C---EEEEEeCCCcEEEEeCC
Q 001184 987 QLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNS---Q---LIYATFTDGSIGVFDAD 1039 (1130)
Q Consensus 987 ~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg---~---~l~t~~~Dg~i~vwd~~ 1039 (1130)
.|.||-...............+...|-+|+|-++. . +|++++-.|.+.+|++.
T Consensus 188 ~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 188 EVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred eEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 56666544321111111112246789999997743 2 78888889999998873
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=89.31 E-value=14 Score=41.20 Aligned_cols=151 Identities=11% Similarity=0.117 Sum_probs=89.9
Q ss_pred EEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccC------CccEEEEEecCCcEEEEEccCC
Q 001184 459 DLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKE------NIHFIFSTAVDGKIKAWLYDNV 531 (1130)
Q Consensus 459 ~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~------~~~~l~s~s~dg~i~vwd~~~~ 531 (1130)
-+-...+.+.+++..|+....++-.| ..|+.+..+.-|...| +.|.|.. +.+.|+ |-.+..|.-.|.+..
T Consensus 471 K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~ 547 (776)
T COG5167 471 KIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRAR 547 (776)
T ss_pred hceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEE-eecccceEEeccccc
Confidence 33444444444666777777888888 8899998888777664 3333321 223344 444555555566654
Q ss_pred cceeeecCCCccEEEEEEe----cCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEe
Q 001184 532 GSRVDYDAPGLWCTTMLYS----ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG 607 (1130)
Q Consensus 532 ~~~~~~~~~~~~v~~~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 607 (1130)
.............+.-.|+ ....++++++. .|-|++||.-.-+....+++.. ..|..+..+.+|+++++.+
T Consensus 548 gNKi~v~esKdY~tKn~Fss~~tTesGyIa~as~----kGDirLyDRig~rAKtalP~lG-~aIk~idvta~Gk~ilaTC 622 (776)
T COG5167 548 GNKIKVVESKDYKTKNKFSSGMTTESGYIAAASR----KGDIRLYDRIGKRAKTALPGLG-DAIKHIDVTANGKHILATC 622 (776)
T ss_pred CCceeeeeehhccccccccccccccCceEEEecC----CCceeeehhhcchhhhcCcccc-cceeeeEeecCCcEEEEee
Confidence 4333222222222222232 24458888876 8889999965444444445433 3788889999999988877
Q ss_pred CCCcEEEEeCC
Q 001184 608 EDNQIKFWDMD 618 (1130)
Q Consensus 608 ~dg~i~vwd~~ 618 (1130)
. ..+.+-|+.
T Consensus 623 k-~yllL~d~~ 632 (776)
T COG5167 623 K-NYLLLTDVP 632 (776)
T ss_pred c-ceEEEEecc
Confidence 6 456666653
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.17 E-value=1.4 Score=47.68 Aligned_cols=159 Identities=13% Similarity=0.053 Sum_probs=99.2
Q ss_pred CCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEE--EeCCCC----CeE-EEEEeCCCCcEEEEEeCCCcEEEE-E
Q 001184 832 AEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTT--FMSPPP----AST-FLAFHPQDNNIIAIGMEDSTIQIY-N 903 (1130)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~--~~~~~~----~i~-~l~~sp~~~~~lasg~~dg~v~iw-d 903 (1130)
.-..+..+-..|||+.+..-+..++.++++.+...... .....+ .|+ ++..-. ++.-+.+++.||.|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 45677888999999999988888899998876433221 111111 122 222233 66777789999998776 5
Q ss_pred eecC-e----EEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCc
Q 001184 904 VRVD-E----VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV 978 (1130)
Q Consensus 904 ~~~~-~----~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 978 (1130)
+..+ . .++.++-...++..+.--.+.+-+++-+..|++.++.-...+..... ........+++||.+.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~-------~~~~~~~~~~~Sp~~~ 370 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE-------RAYQAPQLVAMSPNQA 370 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehh-------hhhcCcceeeeCcccc
Confidence 4432 2 12223322334444443344566778888888887765542221111 0113566789999999
Q ss_pred EEEEEcCCcEEEEECCCcee
Q 001184 979 RLLVNHETQLAIYDGSKMEC 998 (1130)
Q Consensus 979 ~l~~~~d~~i~v~d~~~~~~ 998 (1130)
+|++-+.+.++++.+++...
T Consensus 371 ~Ll~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 371 YLLSEDQGKIRLAQLENRNP 390 (733)
T ss_pred hheeecCCceEEEEecCCCC
Confidence 99999999999998876443
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.12 E-value=5.3 Score=48.83 Aligned_cols=145 Identities=9% Similarity=0.103 Sum_probs=86.7
Q ss_pred CCeeEEEEccCCCeEEE--EeCCCcEEEEECCCCcccce---eeEec--cCCCCCCCeEEEEEcCCCc--EEEEEcCCcE
Q 001184 918 KHITGLAFSTNLNILVS--SGSDAQLIFWNTDTWEKRKS---IAIQL--PAGKLPVGETRVQFHSDQV--RLLVNHETQL 988 (1130)
Q Consensus 918 ~~V~~l~~s~dg~~L~s--~s~Dg~i~vwd~~~~~~~~~---~~~~~--~~~~~~~~v~~~~~s~d~~--~l~~~~d~~i 988 (1130)
-+|..+...+|+...++ .+.+-.|.+||+........ .++.. ..........++.|.|.-- .++...|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 35666777778765444 33445799999987443221 11110 1111224556677776433 3334678888
Q ss_pred EEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEE
Q 001184 989 AIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVV 1068 (1130)
Q Consensus 989 ~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1130)
++..+........-... ...+++++|+|.|+.++.|-..|++.-|... ++....+...-. -....++++
T Consensus 181 ~V~~~~~~~~~v~s~p~---t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~-------~e~yrvl~v 249 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPV---TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPV-------EENYRVLSV 249 (1405)
T ss_pred hhhhhhhhhhhhcccCc---ccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCc-------CCCcceeEE
Confidence 88877643332221111 4678999999999999999999999988754 443333332211 124668888
Q ss_pred EEcCC
Q 001184 1069 TSHPQ 1073 (1130)
Q Consensus 1069 ~~~~~ 1073 (1130)
+|...
T Consensus 250 ~Wl~t 254 (1405)
T KOG3630|consen 250 TWLST 254 (1405)
T ss_pred EEecc
Confidence 99875
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=89.11 E-value=40 Score=37.24 Aligned_cols=190 Identities=12% Similarity=0.195 Sum_probs=102.6
Q ss_pred cCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeC---CCCcE--EEEEe-CC---CcEEEEEeec--CeEE
Q 001184 843 KNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHP---QDNNI--IAIGM-ED---STIQIYNVRV--DEVK 910 (1130)
Q Consensus 843 ~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp---~~~~~--lasg~-~d---g~v~iwd~~~--~~~~ 910 (1130)
|...+|+... .+.+.+||+...+. ..+. .+....+..-- -+++. ||+++ .+ .+|++|.+.. +. +
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~l-q~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L 141 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKEL-QSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-L 141 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-EE-EEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-E
T ss_pred cccceEEEEeCCCCEEEEcCCCcEE-Eeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-c
Confidence 4444555555 68899999976544 4443 23444444321 02222 34443 32 4699998873 43 3
Q ss_pred EEEec-------CCCCeeEEEE--cc-CCC-eEEEEeCCCcEEEEECCCCc---ccceeeEeccCCCCCCCeEEEEEcCC
Q 001184 911 TKLKG-------HQKHITGLAF--ST-NLN-ILVSSGSDAQLIFWNTDTWE---KRKSIAIQLPAGKLPVGETRVQFHSD 976 (1130)
Q Consensus 911 ~~l~~-------h~~~V~~l~~--s~-dg~-~L~s~s~Dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~d 976 (1130)
..+.. ....+..+|+ ++ +|. +++..+.+|.+..|.+.... ........+. ....+..++....
T Consensus 142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~---~~sQ~EGCVVDDe 218 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK---VGSQPEGCVVDDE 218 (381)
T ss_dssp EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----SS-EEEEEEETT
T ss_pred eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec---CCCcceEEEEecc
Confidence 33321 1234667776 33 454 56677889999888886322 2222222222 2257888888888
Q ss_pred CcEEEEE-cCCcEEEEECCC-----ceeeeeeecCCCCCCCeEEEEEC--CCCC-EEEEEe-CCCcEEEEeCCC
Q 001184 977 QVRLLVN-HETQLAIYDGSK-----MECIRQWVPQDVLSSPISSAAYS--CNSQ-LIYATF-TDGSIGVFDADS 1040 (1130)
Q Consensus 977 ~~~l~~~-~d~~i~v~d~~~-----~~~~~~~~~~~~~~~~v~~v~~s--~dg~-~l~t~~-~Dg~i~vwd~~~ 1040 (1130)
..+|..+ .+..|.-|+.+- +..+.... .......|-.+++- .+|+ ||++++ .+++..||+.+.
T Consensus 219 ~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~-g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 219 TGRLYVGEEDVGIWRYDAEPEGGNDRTLVASAD-GDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp TTEEEEEETTTEEEEEESSCCC-S--EEEEEBS-SSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred cCCEEEecCccEEEEEecCCCCCCcceeeeccc-ccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 8888876 466777787751 22332222 22335678888774 3544 777666 467899999875
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=88.94 E-value=36 Score=36.49 Aligned_cols=172 Identities=11% Similarity=0.066 Sum_probs=95.2
Q ss_pred eEEEEECCCceeEEEEeCC------CCCeEEEEEeCCCC----cEEEEEe-CCCcEEEEEeecCeEEEEEecC-------
Q 001184 855 KVSLFNMMNFKVMTTFMSP------PPASTFLAFHPQDN----NIIAIGM-EDSTIQIYNVRVDEVKTKLKGH------- 916 (1130)
Q Consensus 855 ~i~iwd~~~~~~~~~~~~~------~~~i~~l~~sp~~~----~~lasg~-~dg~v~iwd~~~~~~~~~l~~h------- 916 (1130)
+|.+||+.+.+.++++.-+ .+....+.+...++ .++..++ ..+-|.|||+.+++.-+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 6889999999998887633 34467777766222 3444443 3357999999988765544321
Q ss_pred ------------CCCeeEEEEcc---CCCeEEEEeCCCcEEEEECCCCccccee---------eEeccCCCCCCCeEEEE
Q 001184 917 ------------QKHITGLAFST---NLNILVSSGSDAQLIFWNTDTWEKRKSI---------AIQLPAGKLPVGETRVQ 972 (1130)
Q Consensus 917 ------------~~~V~~l~~s~---dg~~L~s~s~Dg~i~vwd~~~~~~~~~~---------~~~~~~~~~~~~v~~~~ 972 (1130)
.+.+.+++.+| ||++|.-....+ -.+|.+.+....... ..+.. +........++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g~~ 192 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQSDGMA 192 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SECEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceec-cccCCCCceEE
Confidence 23366777765 667777665544 245554431111100 00000 11113456788
Q ss_pred EcCCCcEEEE-EcCCcEEEEECCCce---eeeeeecCCCCCCCeEEEEECC--CCCEEEEEe
Q 001184 973 FHSDQVRLLV-NHETQLAIYDGSKME---CIRQWVPQDVLSSPISSAAYSC--NSQLIYATF 1028 (1130)
Q Consensus 973 ~s~d~~~l~~-~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~v~~v~~s~--dg~~l~t~~ 1028 (1130)
++++|.+..+ -..+.|..|+..+.- ....+......-..+.++.+.+ +|.+.+.+.
T Consensus 193 ~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 193 IDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred ECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 8898888877 468899999988611 1222222211134678899988 777666554
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=88.87 E-value=38 Score=36.68 Aligned_cols=209 Identities=11% Similarity=-0.015 Sum_probs=102.2
Q ss_pred CCCceeEEEEecCCCEEEEEeCCe--EEEEECCCcee---------------EEEEeCCCCCeEEEEEeCCCCcEEEEEe
Q 001184 832 AEDVVPCVALSKNDSYVMSAGGGK--VSLFNMMNFKV---------------MTTFMSPPPASTFLAFHPQDNNIIAIGM 894 (1130)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~dg~--i~iwd~~~~~~---------------~~~~~~~~~~i~~l~~sp~~~~~lasg~ 894 (1130)
+...|+++.+.+..+.|++-+++. ++.+++..... ....-++.......+........++++.
T Consensus 41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A 120 (302)
T smart00036 41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA 120 (302)
T ss_pred CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence 567899999999999888887665 99999843331 0111133343444454442222333444
Q ss_pred CCCcEEEEEeecC--e--EEEEE---e-cCCCCeeEEEEccC--CCeEEEEeCCCcEEEEECCC--CcccceeeEeccCC
Q 001184 895 EDSTIQIYNVRVD--E--VKTKL---K-GHQKHITGLAFSTN--LNILVSSGSDAQLIFWNTDT--WEKRKSIAIQLPAG 962 (1130)
Q Consensus 895 ~dg~v~iwd~~~~--~--~~~~l---~-~h~~~V~~l~~s~d--g~~L~s~s~Dg~i~vwd~~~--~~~~~~~~~~~~~~ 962 (1130)
...+|.++..... + ....+ . .-..++..+..+++ ...+..|+..+...++++.. ....... ......
T Consensus 121 ~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~s-l~~~~~ 199 (302)
T smart00036 121 LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLS-LPFLSE 199 (302)
T ss_pred cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccccccc-cccccc
Confidence 5566777654322 1 11110 0 01123444443433 44666666542345555533 1100000 000000
Q ss_pred CCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeee-eecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCc
Q 001184 963 KLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQ-WVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSL 1041 (1130)
Q Consensus 963 ~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~ 1041 (1130)
.......++..-+++.+|++-++ ....-|.......+. .... .....++++. ..+|++-. +..|.|+++.++
T Consensus 200 ~~~~~p~~i~~l~~~e~Llc~~~-~~v~Vn~~G~~~~r~~~l~w---~~~p~~~~~~--~pyll~~~-~~~ievr~l~~~ 272 (302)
T smart00036 200 ETSLKPISVVQVPRDEFLLCYDE-FGVFVNLYGKRRSRNPILHW---EFMPESFAYH--SPYLLAFH-DNGIEIRSIKTG 272 (302)
T ss_pred ccccCceEEEEECCCeEEEEECc-EEEEEeCCCCccccceEEEc---CCcccEEEEE--CCEEEEEc-CCcEEEEECCCC
Confidence 00002333444445666555433 333444432111111 1111 3455677776 45676665 556999999999
Q ss_pred ccccccC
Q 001184 1042 RLRCRIA 1048 (1130)
Q Consensus 1042 ~~~~~~~ 1048 (1130)
++...+.
T Consensus 273 ~l~q~i~ 279 (302)
T smart00036 273 ELLQELA 279 (302)
T ss_pred ceEEEEe
Confidence 8876664
|
Unpublished observations. |
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=88.69 E-value=39 Score=43.96 Aligned_cols=69 Identities=14% Similarity=0.130 Sum_probs=50.8
Q ss_pred CCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEE
Q 001184 917 QKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYD 992 (1130)
Q Consensus 917 ~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d 992 (1130)
...|+++|.-.+ +.+++.+..|.+.... +.+. +..+......+.|..++...+..+.+...+|.++-.+
T Consensus 702 ~~~i~a~Avv~~-~~fvald~qg~lt~h~-k~g~-----p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~Lf~~~ 770 (1774)
T PF11725_consen 702 DRVITAFAVVND-NKFVALDDQGDLTAHQ-KPGR-----PVPLSRPGLSGEIKDLALDEKQNLYALTSTGELFRLP 770 (1774)
T ss_pred cCcceeEEEEcC-CceEEeccCCcccccc-CCCC-----CccCCCCCCCcchhheeeccccceeEecCCCceeecC
Confidence 455788888744 6677788889898887 5543 3444444556889999999999888888888877644
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=88.61 E-value=21 Score=35.59 Aligned_cols=173 Identities=10% Similarity=0.072 Sum_probs=89.5
Q ss_pred cEEEEEeCCCcEEEEEee--cCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCC------cEEEE---ECCCCcccceee
Q 001184 888 NIIAIGMEDSTIQIYNVR--VDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDA------QLIFW---NTDTWEKRKSIA 956 (1130)
Q Consensus 888 ~~lasg~~dg~v~iwd~~--~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg------~i~vw---d~~~~~~~~~~~ 956 (1130)
..|..+...+.|.+|++. ..+.+.++..- +.|..+.++..|++|++--.+. .+++| +....+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~----- 102 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEEN----- 102 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccC-----
Confidence 444444667789999998 34566777644 8899999999999999975532 34443 2221000
Q ss_pred EeccCCCCCCCeE-EEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 001184 957 IQLPAGKLPVGET-RVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGV 1035 (1130)
Q Consensus 957 ~~~~~~~~~~~v~-~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~v 1035 (1130)
.++. .++ |..+-.+..+.. +..+..++.+. +.++.+++-.|-..-|+.|+ ++.+.+
T Consensus 103 ---------~~v~vRia----G~~v~~~~~~~~-------~~qleiiElPl--~~~p~ciaCC~~tG~LlVg~-~~~l~l 159 (215)
T PF14761_consen 103 ---------SPVRVRIA----GHRVTPSFNESS-------KDQLEIIELPL--SEPPLCIACCPVTGNLLVGC-GNKLVL 159 (215)
T ss_pred ---------CcEEEEEc----ccccccCCCCcc-------ccceEEEEecC--CCCCCEEEecCCCCCEEEEc-CCEEEE
Confidence 1111 111 100000000000 11112222221 45778888888655666676 678999
Q ss_pred EeCCCccc-ccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 001184 1036 FDADSLRL-RCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1093 (1130)
Q Consensus 1036 wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~ 1093 (1130)
|.+..... ...+....+......|.-...+..+++. +++++..+. -.+++.++.
T Consensus 160 f~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~ic---~~yiA~~s~-~ev~Vlkl~ 214 (215)
T PF14761_consen 160 FTLKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVAIC---EGYIAVMSD-LEVLVLKLE 214 (215)
T ss_pred EEEEEEEEecccccEEechhhhhheecCceEEEEEEE---eeEEEEecC-CEEEEEEEe
Confidence 97765443 2111111111111122233445555553 357777774 447777653
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=88.51 E-value=29 Score=38.57 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=14.8
Q ss_pred CCCeEEEEeCC-----CcEEEEECCCCc
Q 001184 928 NLNILVSSGSD-----AQLIFWNTDTWE 950 (1130)
Q Consensus 928 dg~~L~s~s~D-----g~i~vwd~~~~~ 950 (1130)
+++.++.|+.+ ..+.+||..+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 112 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNE 112 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCE
Confidence 45666677653 247788887744
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=87.87 E-value=42 Score=35.98 Aligned_cols=190 Identities=12% Similarity=0.144 Sum_probs=99.8
Q ss_pred EeeecCCCCCCCCcc--cccccccccccCCCCcceeccCCC----CCCCceeEEEEecCC-----CEEEEEe--CCeEEE
Q 001184 792 KLWKWNRTEQNPSGK--ATAAVAPQHWQPSNGLLMTNDVPE----NAEDVVPCVALSKND-----SYVMSAG--GGKVSL 858 (1130)
Q Consensus 792 ~iw~~~~~~~~~~~~--~~~~~~~~~w~~~~~~~~~~~~~~----~~~~~i~~l~~s~dg-----~~la~~~--dg~i~i 858 (1130)
++|-++.+.....+. ..+...+..||+.+++++...... .....+..+++.... .++..+. .+.|.|
T Consensus 13 rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV 92 (287)
T PF03022_consen 13 RLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIV 92 (287)
T ss_dssp EEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEE
T ss_pred CEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEE
Confidence 456666554332221 244456677899988865443222 235567788887632 3444444 467999
Q ss_pred EECCCceeEEEEeCCC-------------------CCeEEEEEeCC--CCcEEEEEeCCCcEEEEEeecC----------
Q 001184 859 FNMMNFKVMTTFMSPP-------------------PASTFLAFHPQ--DNNIIAIGMEDSTIQIYNVRVD---------- 907 (1130)
Q Consensus 859 wd~~~~~~~~~~~~~~-------------------~~i~~l~~sp~--~~~~lasg~~dg~v~iwd~~~~---------- 907 (1130)
+|+.+++..+.+..+. ..+..++.+|- +++.|....-.+ -++|.+.+.
T Consensus 93 ~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~ 171 (287)
T PF03022_consen 93 YDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDA 171 (287)
T ss_dssp EETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HH
T ss_pred EEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCcccccc
Confidence 9999988776665322 12444455441 224444443322 234444321
Q ss_pred ----eEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcC--CCcEEE
Q 001184 908 ----EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHS--DQVRLL 981 (1130)
Q Consensus 908 ----~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~ 981 (1130)
+.+..+-.......+++++++|..+++--..+.|..|+..+.-.......-......-..+..+.+.+ +|.+.+
T Consensus 172 ~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v 251 (287)
T PF03022_consen 172 QALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWV 251 (287)
T ss_dssp H-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEE
T ss_pred ccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEE
Confidence 01122211123567789999999999999999999999887333222222222222125667788888 666554
Q ss_pred E
Q 001184 982 V 982 (1130)
Q Consensus 982 ~ 982 (1130)
.
T Consensus 252 ~ 252 (287)
T PF03022_consen 252 L 252 (287)
T ss_dssp E
T ss_pred E
Confidence 4
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=87.53 E-value=41 Score=35.43 Aligned_cols=203 Identities=15% Similarity=0.139 Sum_probs=117.2
Q ss_pred CeeEEEEecCCCceEEEEEcCCCcEEEEecC-----CC---eeeEecC-----CCcCEEEEeecccCC----------cc
Q 001184 456 GVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS-----GR---KLFQFEG-----HEAPVYSVCPHQKEN----------IH 512 (1130)
Q Consensus 456 ~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~-----~~---~~~~~~~-----h~~~v~~~~~~~~~~----------~~ 512 (1130)
.-+.|+|+|.+. +-++...-+...+||.. +. .+.++.. .....+.+.|+...+ ..
T Consensus 24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 358899999887 67777778899999943 21 2333331 123456666653221 12
Q ss_pred EEEEEecCCcEEEEEccCCcc-----eeeecCC--CccEEEEEEec--CCCeEEEeeecCCCCcEEEEeeCCCCceeE--
Q 001184 513 FIFSTAVDGKIKAWLYDNVGS-----RVDYDAP--GLWCTTMLYSA--DGSRLFSCGTSKEGDSHLVEWNESEGALKR-- 581 (1130)
Q Consensus 513 ~l~s~s~dg~i~vwd~~~~~~-----~~~~~~~--~~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~-- 581 (1130)
.++.+++||+|.-|....... ...+... ..-...+++.. .+.+|..+-. ..++|.++|-.-.+...
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence 467889999999997533222 2223221 22344555553 3566666543 27889999854322210
Q ss_pred EEecc--cC--ceeEE-----------EEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcC----
Q 001184 582 TYIGF--RK--KSAGV-----------VQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK---- 642 (1130)
Q Consensus 582 ~~~~~--~~--~~v~~-----------~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~---- 642 (1130)
.+... .. .+... ..-.++...=+.|..-|.|-+||+ .|+.++.+...+....-..++..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 01100 00 00111 111122222223334578999997 577888776665555667777755
Q ss_pred --CCCEEEEEeCCCcEEEEEcCCC
Q 001184 643 --EGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 643 --~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
.+.+|+---.||+|..+|..++
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSG 281 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCC
Confidence 4677777778999999998877
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.06 E-value=14 Score=40.43 Aligned_cols=161 Identities=16% Similarity=0.133 Sum_probs=91.9
Q ss_pred CccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCcee-EEEEecC
Q 001184 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVP-CVALSKN 844 (1130)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~-~l~~s~d 844 (1130)
....+..+...|||+.+++.+. ..+.++++........ + . .+-..| .....|+ .+..-..
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r-k-l-------~~dspg---------~~~~~Vte~l~lL~G 279 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR-K-L-------VDDSPG---------DSRHQVTEQLYLLSG 279 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh-h-h-------hhcCCC---------chHHHHHHHHHHHhC
Confidence 4567788999999999988777 6777887765332211 0 0 010000 0011111 1112234
Q ss_pred CCEEEEEe-CCeEEEE-ECCCc-----eeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCC
Q 001184 845 DSYVMSAG-GGKVSLF-NMMNF-----KVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQ 917 (1130)
Q Consensus 845 g~~la~~~-dg~i~iw-d~~~~-----~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~ 917 (1130)
|.-+.++. ||.|.-| |.... ..++.++-...++..+.-.. +.+-+++-+.+|++.++.....+.+..-. --
T Consensus 280 g~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~ 357 (733)
T COG4590 280 GFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLLFER-AY 357 (733)
T ss_pred ceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcceehhh-hh
Confidence 44444444 7776655 44322 22333333334454444433 56778888899999888766554432222 22
Q ss_pred CCeeEEEEccCCCeEEEEeCCCcEEEEECCC
Q 001184 918 KHITGLAFSTNLNILVSSGSDAQLIFWNTDT 948 (1130)
Q Consensus 918 ~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~ 948 (1130)
..+.-+++||.+.+|++-. .|.++++.+++
T Consensus 358 ~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~N 387 (733)
T COG4590 358 QAPQLVAMSPNQAYLLSED-QGKIRLAQLEN 387 (733)
T ss_pred cCcceeeeCcccchheeec-CCceEEEEecC
Confidence 3566789999999998765 45688888876
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.27 E-value=21 Score=39.25 Aligned_cols=130 Identities=9% Similarity=0.006 Sum_probs=77.0
Q ss_pred CCeEEEEEcCCCcEEEEE-cCCcEEEEECCCceeeeee-ecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCccc
Q 001184 966 VGETRVQFHSDQVRLLVN-HETQLAIYDGSKMECIRQW-VPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRL 1043 (1130)
Q Consensus 966 ~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~~~-~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~ 1043 (1130)
+++.++.||+|.+.+|+. .+.+|.+++....+..... ..+...+..|...+|+.+. -+|.-+.. -+-+|-+..-+.
T Consensus 67 G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~-e~A~i~~~-G~e~y~v~pekr 144 (657)
T KOG2377|consen 67 GEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST-EIAFITDQ-GIEFYQVLPEKR 144 (657)
T ss_pred CceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe-eEEEEecC-CeEEEEEchhhh
Confidence 689999999999999994 6889999887433322221 1122225569999999774 44544433 366665543332
Q ss_pred ccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEe-CCCcEEEEeCCCCccCCcccccCCCCCC
Q 001184 1044 RCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGL-TDGSVKVIEPSETERKWGVAVPVDNGTD 1110 (1130)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~Dg~v~vW~~~~~~~~w~~~~p~~~~~~ 1110 (1130)
-.++- .++.+.+.-.+|.++..-.|++.+ ..+++.-+.++++.. +..|.-.-++
T Consensus 145 slRlV----------ks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~v---~kLPkfe~~~ 199 (657)
T KOG2377|consen 145 SLRLV----------KSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGTM---SKLPKFEIEL 199 (657)
T ss_pred hhhhh----------hhcccCccEEEEccccceEeeeccccccccccEEEeecee---eeccceeecC
Confidence 22221 234455666788886444444444 456666666666553 3445444444
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=86.25 E-value=38 Score=40.68 Aligned_cols=109 Identities=11% Similarity=0.227 Sum_probs=70.6
Q ss_pred eeEEEEe--cCCCEEEEEe-CCeEEEEECCC-------c----e---------eEEEEeCCCCCeEEEEEe--CCCCcEE
Q 001184 836 VPCVALS--KNDSYVMSAG-GGKVSLFNMMN-------F----K---------VMTTFMSPPPASTFLAFH--PQDNNII 890 (1130)
Q Consensus 836 i~~l~~s--~dg~~la~~~-dg~i~iwd~~~-------~----~---------~~~~~~~~~~~i~~l~~s--p~~~~~l 890 (1130)
|..|.+. -+...|+.+. ||.|.+|.+++ . + +...+. -...+..++++ . ..++|
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~rlI 180 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSRLI 180 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cceEE
Confidence 4444443 2344555555 79999997632 1 0 011111 23467889998 6 78899
Q ss_pred EEEeCCCcEEEEEeecC--eEE-EEEecCCCCeeEEEEccCC---C---eEEEEeCCCcEEEEEC
Q 001184 891 AIGMEDSTIQIYNVRVD--EVK-TKLKGHQKHITGLAFSTNL---N---ILVSSGSDAQLIFWNT 946 (1130)
Q Consensus 891 asg~~dg~v~iwd~~~~--~~~-~~l~~h~~~V~~l~~s~dg---~---~L~s~s~Dg~i~vwd~ 946 (1130)
|+++....|.||-.... +.. ..-..|...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 99999998988876542 111 1111256679999997653 2 7888999999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=85.88 E-value=3.9 Score=41.70 Aligned_cols=76 Identities=17% Similarity=0.119 Sum_probs=53.9
Q ss_pred EccCCCeEEEEeCCCcEEEEECCCCccccee-e-EeccCC------CCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCc
Q 001184 925 FSTNLNILVSSGSDAQLIFWNTDTWEKRKSI-A-IQLPAG------KLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKM 996 (1130)
Q Consensus 925 ~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~-~-~~~~~~------~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~ 996 (1130)
+..++.+|++.+.+|.+++||+.+.+..... . ...... .....|..+.++.+|.-+++-.++..+.|+..-+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4457889999999999999999997654332 0 011110 2336788889999999888877788899987754
Q ss_pred eeee
Q 001184 997 ECIR 1000 (1130)
Q Consensus 997 ~~~~ 1000 (1130)
.-+.
T Consensus 98 ~W~~ 101 (219)
T PF07569_consen 98 CWIR 101 (219)
T ss_pred eeEE
Confidence 4433
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=85.56 E-value=72 Score=37.25 Aligned_cols=219 Identities=13% Similarity=0.065 Sum_probs=0.0
Q ss_pred CCcEEEEEeCC-------CcEEEEEeecCeEEEEEecCCCCe----eEEEEccCCCeEEEEeCC-----CcEEEEECCCC
Q 001184 886 DNNIIAIGMED-------STIQIYNVRVDEVKTKLKGHQKHI----TGLAFSTNLNILVSSGSD-----AQLIFWNTDTW 949 (1130)
Q Consensus 886 ~~~~lasg~~d-------g~v~iwd~~~~~~~~~l~~h~~~V----~~l~~s~dg~~L~s~s~D-----g~i~vwd~~~~ 949 (1130)
++.+++.|+.+ ..+.+||+.+.+-...-.....+- ..-+..-+++..+.++.+ ..+..+|+.+
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t- 253 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTT- 253 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCC-
Q ss_pred cccceeeEeccCC---CCCCCeEEEEEcCCCcEEEEEcCCc-----EEEEECCCceeeeeeecCCCCCCCeEEEEECCCC
Q 001184 950 EKRKSIAIQLPAG---KLPVGETRVQFHSDQVRLLVNHETQ-----LAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNS 1021 (1130)
Q Consensus 950 ~~~~~~~~~~~~~---~~~~~v~~~~~s~d~~~l~~~~d~~-----i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg 1021 (1130)
......... ..+....+++...+.-+++.+.++. +..||+.+.+-...-.............+..-++
T Consensus 254 ----~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~g 329 (470)
T PLN02193 254 ----NEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQG 329 (470)
T ss_pred ----CEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECC
Q ss_pred CEEEEEeCC----CcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCC------------
Q 001184 1022 QLIYATFTD----GSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDG------------ 1085 (1130)
Q Consensus 1022 ~~l~t~~~D----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg------------ 1085 (1130)
++++.++.+ ..+.+||..+.+....-...........|+.... ++.+++.|+.+.
T Consensus 330 kiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~---------~~~iyv~GG~~~~~~~~~~~~~~~ 400 (470)
T PLN02193 330 KVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV---------GKHIVIFGGEIAMDPLAHVGPGQL 400 (470)
T ss_pred cEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE---------CCEEEEECCccCCccccccCccce
Q ss_pred --cEEEEeCCCCccCCcccc--cCCCCCCCCccccCCCC
Q 001184 1086 --SVKVIEPSETERKWGVAV--PVDNGTDNCRTVTSSAT 1120 (1130)
Q Consensus 1086 --~v~vW~~~~~~~~w~~~~--p~~~~~~~~~~~~~~~~ 1120 (1130)
.+.++|+.+.+ |.... +.++-.+.+|.-++.++
T Consensus 401 ~ndv~~~D~~t~~--W~~~~~~~~~~~~P~~R~~~~~~~ 437 (470)
T PLN02193 401 TDGTFALDTETLQ--WERLDKFGEEEETPSSRGWTASTT 437 (470)
T ss_pred eccEEEEEcCcCE--EEEcccCCCCCCCCCCCcccccee
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=85.31 E-value=13 Score=43.27 Aligned_cols=133 Identities=11% Similarity=-0.002 Sum_probs=68.9
Q ss_pred EEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeC-------------CCcEEEEe
Q 001184 971 VQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFT-------------DGSIGVFD 1037 (1130)
Q Consensus 971 ~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~-------------Dg~i~vwd 1037 (1130)
+..-++|.+++... ..++.+|+. |+.+..+........-=..+...|+|.+|+.+.. .-.|..+|
T Consensus 153 ~~~l~nG~ll~~~~-~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd 230 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG-NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD 230 (477)
T ss_dssp EEE-TTS-EEEEEB-TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred eeEcCCCCEEEecC-CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence 55678888887655 778888875 5555554433100001135677899998888871 12356666
Q ss_pred CCCcccccccCCCccc-ccC---------------CCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCccCCcc
Q 001184 1038 ADSLRLRCRIAPSAYM-SQA---------------SPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWGV 1101 (1130)
Q Consensus 1038 ~~~~~~~~~~~~~~~~-~~~---------------~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~~~w~~ 1101 (1130)
.+|+.+..+.....+ +.. .....-...-++.+.+.++.+++|+=.-..|...|..+++.+|-+
T Consensus 231 -~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 231 -PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWIL 309 (477)
T ss_dssp -TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred -CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence 777766554433322 110 012223456678888866555555544558889998999999988
Q ss_pred cccCC
Q 001184 1102 AVPVD 1106 (1130)
Q Consensus 1102 ~~p~~ 1106 (1130)
..|..
T Consensus 310 g~~~~ 314 (477)
T PF05935_consen 310 GPPGG 314 (477)
T ss_dssp S-STT
T ss_pred CCCCC
Confidence 87765
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.75 E-value=51 Score=40.69 Aligned_cols=249 Identities=12% Similarity=0.041 Sum_probs=117.3
Q ss_pred EEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe
Q 001184 773 LLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG 852 (1130)
Q Consensus 773 l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~ 852 (1130)
.++..-|..+.+|+.+|.+.+|.+........... .. + ....... -++.+|..+...+.-.++.+-+
T Consensus 20 ~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~--~~-------~-~~~~~~~---~~kk~i~~l~~~~~~~~ll~l~ 86 (877)
T KOG2063|consen 20 LCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVEL--VT-------E-TVKFEKE---FSKKPINKLLVCASLELLLILS 86 (877)
T ss_pred hHHHHhCCEEEEEcCCCcEEEEeccccccccchhh--hc-------c-hhHHhhh---hccchhHHHhhcchhcchheec
Confidence 44555688899999999999998766433211111 00 0 0001111 1356777777777777788888
Q ss_pred CCeEEEEECCCceeEEEEeCCCCCeEEEEEeC---CCC--cEEEEEe-CCCcE-EEEEeecCeEEEEEecCCCCeeEEEE
Q 001184 853 GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHP---QDN--NIIAIGM-EDSTI-QIYNVRVDEVKTKLKGHQKHITGLAF 925 (1130)
Q Consensus 853 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp---~~~--~~lasg~-~dg~v-~iwd~~~~~~~~~l~~h~~~V~~l~~ 925 (1130)
|+.|.++++.+.+..... .+...+...+..- ..+ .+.+... ....+ ..|+-+.+..+..--+-.....+++|
T Consensus 87 dsqi~~~~l~~~~~~~~~-~~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 165 (877)
T KOG2063|consen 87 DSQIAVHKLPELEPVPSG-TRLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARAW 165 (877)
T ss_pred CCcceeeecCcccccccc-cccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhcc
Confidence 888998888766552111 1111111111100 011 1122222 11111 22332222222221111222233333
Q ss_pred ccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCcee-eeeeec
Q 001184 926 STNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMEC-IRQWVP 1004 (1130)
Q Consensus 926 s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~-~~~~~~ 1004 (1130)
.|..+.++-.+....+|.-.++............ ...-..+.--.++..++.+.|+...+-|.. |.. .+.-..
T Consensus 166 --~~~~~c~~~~~~~~ii~~~~~~~~~~~~~s~~~~---~s~~P~I~~l~~~~~ll~~kd~~gv~vd~~-G~~~~~~~l~ 239 (877)
T KOG2063|consen 166 --CGHIVCLGLKKSYYIINNTSKGVGPNLFPSSMDN---ESRKPLIKSLSDQSELLLGKDNIGVVVDLN-GIIAQRGTLV 239 (877)
T ss_pred --cceeEEEeecceeEEEecCCCccccceeeecccc---ccCCCeEEEecCCceEEEccCceEEEEecC-CcccCCCceE
Confidence 3444444444344445554444222222222111 122234555566766777777776666644 322 111100
Q ss_pred CCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCccccccc
Q 001184 1005 QDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRI 1047 (1130)
Q Consensus 1005 ~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~ 1047 (1130)
. +....++. -+..|+++-+ ++.|.||+..+++++..+
T Consensus 240 w---s~~P~~v~--~~~PYlIa~~-~~~veI~s~~~~qlvQSI 276 (877)
T KOG2063|consen 240 W---SEVPLSVV--VESPYLIALL-DRSVEIRSKLDGQLVQSI 276 (877)
T ss_pred e---cccchhhc--ccCceEEEEc-cccEEEEeccCHHHhhcc
Confidence 0 11111221 2456777766 669999999999877766
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.49 E-value=17 Score=39.92 Aligned_cols=108 Identities=11% Similarity=0.094 Sum_probs=69.5
Q ss_pred cCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECC
Q 001184 915 GHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGS 994 (1130)
Q Consensus 915 ~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~ 994 (1130)
...++|.++.||+|.+.||+--.|.+|.+.+....+...........+ ...+....|+.. .-+|.-.+..+-+|-..
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k--~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~ 140 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTK--NANILGFCWTSS-TEIAFITDQGIEFYQVL 140 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccC--cceeEEEEEecC-eeEEEEecCCeEEEEEc
Confidence 355789999999999999999999999999985533222221111111 145778888877 44444455566666654
Q ss_pred C-ceeeeeeecCCCCCCCeEEEEECCCCCEEEEEe
Q 001184 995 K-MECIRQWVPQDVLSSPISSAAYSCNSQLIYATF 1028 (1130)
Q Consensus 995 ~-~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~ 1028 (1130)
. ...++.... ++..|.-..|.++.+.+..++
T Consensus 141 pekrslRlVks---~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 141 PEKRSLRLVKS---HNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred hhhhhhhhhhh---cccCccEEEEccccceEeeec
Confidence 3 222333333 377888899999888554444
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=84.38 E-value=26 Score=39.97 Aligned_cols=116 Identities=11% Similarity=0.112 Sum_probs=63.4
Q ss_pred EecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEe-ccCCCCCCCeEEEEEcCCC------cEEEEE--
Q 001184 913 LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQ-LPAGKLPVGETRVQFHSDQ------VRLLVN-- 983 (1130)
Q Consensus 913 l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~d~------~~l~~~-- 983 (1130)
+...-..-+.|+|.|||++|++--..|.|++++..++.......+. ............|+++|+- .+|.++
T Consensus 25 va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt 104 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYT 104 (454)
T ss_pred EECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEe
Confidence 3334456789999999988777655799999986654321111111 1111123678899999884 244432
Q ss_pred c---------CCcEEEEECCCc-------ee-eeeeecCCCCCCCeEEEEECCCCCEEEEEeCC
Q 001184 984 H---------ETQLAIYDGSKM-------EC-IRQWVPQDVLSSPISSAAYSCNSQLIYATFTD 1030 (1130)
Q Consensus 984 ~---------d~~i~v~d~~~~-------~~-~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D 1030 (1130)
. ...|.-|.+... +. +..+.....| .-..|.|.|||++.++.++.
T Consensus 105 ~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H--~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 105 YKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDH--NGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred ccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCc--CCceEEECCCCcEEEEECCC
Confidence 1 223444544311 11 1111111112 23567899999977766643
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=82.95 E-value=94 Score=35.60 Aligned_cols=63 Identities=16% Similarity=0.074 Sum_probs=39.9
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCC
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 421 (1130)
.-...+.++|.|||+ +|++--..|.|++++..++.......+ +........+....|+++||-
T Consensus 28 GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l------------~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTL------------PEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecC------------CceeccCCCCceeeEEECCCc
Confidence 345789999999997 676654469999998765542211011 000111236778999999984
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=82.87 E-value=89 Score=35.24 Aligned_cols=40 Identities=10% Similarity=0.071 Sum_probs=18.4
Q ss_pred EEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCC
Q 001184 612 IKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD 653 (1130)
Q Consensus 612 i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~d 653 (1130)
+.+||..+.+....-..+.. .-...+..-++++++.|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~--r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQG--LAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCC--ccceEEEEeCCEEEEEcCCC
Confidence 45788877654322111111 11222333346667777653
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=82.81 E-value=83 Score=34.88 Aligned_cols=195 Identities=13% Similarity=0.042 Sum_probs=90.0
Q ss_pred CCCEEEEEe-C-------CeEEEEECCCceeEEEEe--C-CCC---CeEEEEEeCCCCcEEEEEeCC-----CcEEEEEe
Q 001184 844 NDSYVMSAG-G-------GKVSLFNMMNFKVMTTFM--S-PPP---ASTFLAFHPQDNNIIAIGMED-----STIQIYNV 904 (1130)
Q Consensus 844 dg~~la~~~-d-------g~i~iwd~~~~~~~~~~~--~-~~~---~i~~l~~sp~~~~~lasg~~d-----g~v~iwd~ 904 (1130)
++++++.|+ + ..+.+||+.+.+-...-. . ... ....+.+ ++++++.|+.+ ..+.+||.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV---GTKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE---CCEEEEECCCCCCCccCcEEEEEC
Confidence 455666554 2 247888987754332111 1 111 1112222 56777888754 25788888
Q ss_pred ecCeE--EEEEec---CCCCeeEEEEccCCCeEEEEeCC-----------CcEEEEECCCCcccceeeEeccCCCCCCCe
Q 001184 905 RVDEV--KTKLKG---HQKHITGLAFSTNLNILVSSGSD-----------AQLIFWNTDTWEKRKSIAIQLPAGKLPVGE 968 (1130)
Q Consensus 905 ~~~~~--~~~l~~---h~~~V~~l~~s~dg~~L~s~s~D-----------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v 968 (1130)
.+.+- +..+.. ........+..-+++..+.|+.+ ..+.+||..+.+-....... .......-
T Consensus 109 ~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~--~~~~~r~~ 186 (341)
T PLN02153 109 VKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPG--ENFEKRGG 186 (341)
T ss_pred CCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCC--CCCCCCCc
Confidence 76532 222210 11111222223456677777754 24778888774432111100 00000111
Q ss_pred EEEEEcCCCcEEEE-Ec-------------CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCC----
Q 001184 969 TRVQFHSDQVRLLV-NH-------------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD---- 1030 (1130)
Q Consensus 969 ~~~~~s~d~~~l~~-~~-------------d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D---- 1030 (1130)
..++. -++++.+. +. .+.+.+||..+.+-...-.............+..-++++++.|+..
T Consensus 187 ~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~ 265 (341)
T PLN02153 187 AGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDL 265 (341)
T ss_pred ceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCcc
Confidence 11222 34554443 21 2468889988765443211000001111111223357788888842
Q ss_pred ----------CcEEEEeCCCcccc
Q 001184 1031 ----------GSIGVFDADSLRLR 1044 (1130)
Q Consensus 1031 ----------g~i~vwd~~~~~~~ 1044 (1130)
..+.++|..+.+..
T Consensus 266 ~~~~~~~~~~n~v~~~d~~~~~W~ 289 (341)
T PLN02153 266 KGHLGPGTLSNEGYALDTETLVWE 289 (341)
T ss_pred ccccccccccccEEEEEcCccEEE
Confidence 25788888776543
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=82.70 E-value=6.4 Score=40.16 Aligned_cols=72 Identities=13% Similarity=0.121 Sum_probs=51.1
Q ss_pred EecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeec-------CCCccEEEEEEcCCCCEEEEE
Q 001184 355 FHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVK-------DSSISVSRVAWSPDGNFIGVA 427 (1130)
Q Consensus 355 fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~V~~v~~spdg~~las~ 427 (1130)
+..++.+ |.+-+.+|.+++||+.+++.+... ..+.. ++. .....|..+.++.+|.-|++-
T Consensus 18 l~~~~~~-Ll~iT~~G~l~vWnl~~~k~~~~~-~Si~p-----------ll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l 84 (219)
T PF07569_consen 18 LECNGSY-LLAITSSGLLYVWNLKKGKAVLPP-VSIAP-----------LLNSSPVSDKSSSPNITSCSLTSNGVPIVTL 84 (219)
T ss_pred EEeCCCE-EEEEeCCCeEEEEECCCCeeccCC-ccHHH-----------HhcccccccCCCCCcEEEEEEcCCCCEEEEE
Confidence 5566775 666788999999999998876531 11110 122 456789999999999888776
Q ss_pred eCCCeEEEEEecC
Q 001184 428 FTKHLIHLYTYQG 440 (1130)
Q Consensus 428 ~~d~~i~vwd~~~ 440 (1130)
+ +|....|+..-
T Consensus 85 s-ng~~y~y~~~L 96 (219)
T PF07569_consen 85 S-NGDSYSYSPDL 96 (219)
T ss_pred e-CCCEEEecccc
Confidence 5 57788888654
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=82.41 E-value=1.4e+02 Score=37.31 Aligned_cols=166 Identities=17% Similarity=0.136 Sum_probs=103.0
Q ss_pred CCCCCeEEEEEe---CC---CCcEEEEEeCCCcEEEEEee------c---------CeEEEEEecC---CCCeeEEEEcc
Q 001184 872 SPPPASTFLAFH---PQ---DNNIIAIGMEDSTIQIYNVR------V---------DEVKTKLKGH---QKHITGLAFST 927 (1130)
Q Consensus 872 ~~~~~i~~l~~s---p~---~~~~lasg~~dg~v~iwd~~------~---------~~~~~~l~~h---~~~V~~l~~s~ 927 (1130)
....+|..++|+ .. ...+|++- ....+.|+... . ..++..+..+ ..+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 346678888887 21 22466554 44567777721 1 1233344321 23577899998
Q ss_pred C-CCeEEEEeCCCcEEEEECCCCcccceeeEecc---------CCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCce
Q 001184 928 N-LNILVSSGSDAQLIFWNTDTWEKRKSIAIQLP---------AGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKME 997 (1130)
Q Consensus 928 d-g~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~---------~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~ 997 (1130)
. .+.||..+..|...||++.............. .......-..+.|.++...|++.+...+.++|+.+..
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~ 235 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFESNW 235 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCCCC
Confidence 5 46899999999999999933222221111111 1111134458899999999999999999999999876
Q ss_pred eeeeeecCCCCCCCeEEEEECCC--CCEEEEEeCCCcEEEEeCCCc
Q 001184 998 CIRQWVPQDVLSSPISSAAYSCN--SQLIYATFTDGSIGVFDADSL 1041 (1130)
Q Consensus 998 ~~~~~~~~~~~~~~v~~v~~s~d--g~~l~t~~~Dg~i~vwd~~~~ 1041 (1130)
....+.. ......|..+.-+++ +..++.. ...|...++...
T Consensus 236 ~~~~l~~-~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~ 278 (765)
T PF10214_consen 236 QTEYLVT-AKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS 278 (765)
T ss_pred ccchhcc-CCChhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence 6442211 122578999998887 3333333 356777788773
|
These proteins are found in fungi. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=82.05 E-value=58 Score=32.57 Aligned_cols=113 Identities=14% Similarity=0.225 Sum_probs=68.9
Q ss_pred ceeEEEEecCCCEEEEEeCCeEEEEECC--CceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCC------cEEEE---E
Q 001184 835 VVPCVALSKNDSYVMSAGGGKVSLFNMM--NFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS------TIQIY---N 903 (1130)
Q Consensus 835 ~i~~l~~s~dg~~la~~~dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg------~v~iw---d 903 (1130)
....++-+..+.++++.+.+.|.+|++. ..+.+.++..- +.|..+.++. .|.+|++--.+. .+|+| +
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr 96 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWR 96 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhh
Confidence 3344555554455555668889999987 44556666643 7899999999 889998865432 45664 2
Q ss_pred ee--cCeEEE-EEecC---------------------CCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCc
Q 001184 904 VR--VDEVKT-KLKGH---------------------QKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWE 950 (1130)
Q Consensus 904 ~~--~~~~~~-~l~~h---------------------~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~ 950 (1130)
.. ..+.+. .+-|| +.++.+++-.|-..-|+.|+ ++.+.+|.+....
T Consensus 97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQT 166 (215)
T ss_pred hhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEE
Confidence 22 111111 22222 23566777777544555555 4468999887643
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.98 E-value=97 Score=35.08 Aligned_cols=74 Identities=9% Similarity=0.037 Sum_probs=49.9
Q ss_pred eEEEEEeCCCCcEEEEEeCCCcEEEEE---------eecCeEEEEEe-----------cCCCCeeEEEEccCC---CeEE
Q 001184 877 STFLAFHPQDNNIIAIGMEDSTIQIYN---------VRVDEVKTKLK-----------GHQKHITGLAFSTNL---NILV 933 (1130)
Q Consensus 877 i~~l~~sp~~~~~lasg~~dg~v~iwd---------~~~~~~~~~l~-----------~h~~~V~~l~~s~dg---~~L~ 933 (1130)
|..+..++ .|..++-++.+|.+..+= ++.|+..-..+ ...-.+..++|+|+. ..|.
T Consensus 106 V~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 106 VYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 56677888 788888888898654432 22343221111 122346678999985 6888
Q ss_pred EEeCCCcEEEEECCCCcc
Q 001184 934 SSGSDAQLIFWNTDTWEK 951 (1130)
Q Consensus 934 s~s~Dg~i~vwd~~~~~~ 951 (1130)
.-+.|.++++||+.....
T Consensus 185 iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred EEecCcEEEEEecCCcch
Confidence 889999999999988543
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=81.83 E-value=74 Score=33.62 Aligned_cols=218 Identities=12% Similarity=0.106 Sum_probs=119.7
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEecC----Cccceeeeeeec-----CCCCeeEEEEecCCCc----------eEE
Q 001184 411 SVSRVAWSPDGNFIGVAFTKHLIHLYTYQG----SNDLCQSLEIDA-----HVGGVNDLAFSYPNKQ----------LCI 471 (1130)
Q Consensus 411 ~V~~v~~spdg~~las~~~d~~i~vwd~~~----~~~~~~~~~~~~-----h~~~V~~i~~s~d~~~----------l~l 471 (1130)
.-..|+++|.+.+-++....+...+||... +.......++.. .....+.+.|+..... -.+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 356799999999888888889999999861 111111223331 2345777888743320 136
Q ss_pred EEEcCCCcEEEEe-cCCCe-----eeEec-CCCcCE-EEEeecccCCccEEEEE-ecCCcEEEEEccCCccee--eecCC
Q 001184 472 VTCGDDKLIRVWD-LSGRK-----LFQFE-GHEAPV-YSVCPHQKENIHFIFST-AVDGKIKAWLYDNVGSRV--DYDAP 540 (1130)
Q Consensus 472 ~s~s~d~~v~iwd-~~~~~-----~~~~~-~h~~~v-~~~~~~~~~~~~~l~s~-s~dg~i~vwd~~~~~~~~--~~~~~ 540 (1130)
+.+++||+|.=|. .-+.. ...+. ...+.| ..+++.....+.+|+.+ -..++|.++|-.-..... .+...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 7888999999999 22211 12222 122333 45666544444566655 457889999754322111 11111
Q ss_pred Cc----cEEEEEEecCCCeEEEeee---------cCCCCcEEEEeeCCCCceeEEEeccc-CceeEEEEEcC------CC
Q 001184 541 GL----WCTTMLYSADGSRLFSCGT---------SKEGDSHLVEWNESEGALKRTYIGFR-KKSAGVVQFDT------TR 600 (1130)
Q Consensus 541 ~~----~v~~~~~s~~~~~l~~~~~---------~~~~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~~~------~~ 600 (1130)
.- ....+.- -.++.+++-.. .+.+.|.|-++|. .|+.++.+.... -..-..++..| .+
T Consensus 184 ~iPagyAPFnIqn-ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg 261 (336)
T TIGR03118 184 ALPAGYAPFNVQN-LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSG 261 (336)
T ss_pred CCCCCCCCcceEE-ECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCC
Confidence 00 0001100 01222222211 0123678999996 477777774211 11223354433 34
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeEEEeccC
Q 001184 601 NRILAAGEDNQIKFWDMDNVNMLTSTEAEG 630 (1130)
Q Consensus 601 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 630 (1130)
..|+---.||+|..||..+++.+..+....
T Consensus 262 ~lLVGNFGDG~InaFD~~sG~~~g~L~~~~ 291 (336)
T TIGR03118 262 ALLVGNFGDGTINAYDPQSGAQLGQLLDPD 291 (336)
T ss_pred CeEEeecCCceeEEecCCCCceeeeecCCC
Confidence 555555569999999999998887776543
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=81.01 E-value=40 Score=35.83 Aligned_cols=115 Identities=12% Similarity=0.136 Sum_probs=67.7
Q ss_pred CeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEe------CCCeEEEEEecCCcc
Q 001184 370 GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF------TKHLIHLYTYQGSND 443 (1130)
Q Consensus 370 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~------~d~~i~vwd~~~~~~ 443 (1130)
..|.+||+.+.+... .-.+-.+.|+.+.|..+.+.++.|. ....+..||.++..-
T Consensus 16 ~~lC~yd~~~~qW~~-------------------~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSS-------------------PGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred CEEEEEECCCCEeec-------------------CCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence 369999998876543 2334567899999997777888774 345788999887542
Q ss_pred ceeeeeeec-----CCCCeeEEEEecCCCceEEEEEc-C--CCcEEEEe-cCCCeeeE-ecCCCcCEEEEeecc
Q 001184 444 LCQSLEIDA-----HVGGVNDLAFSYPNKQLCIVTCG-D--DKLIRVWD-LSGRKLFQ-FEGHEAPVYSVCPHQ 507 (1130)
Q Consensus 444 ~~~~~~~~~-----h~~~V~~i~~s~d~~~l~l~s~s-~--d~~v~iwd-~~~~~~~~-~~~h~~~v~~~~~~~ 507 (1130)
. .+.+ -.++|..+.+..+...-+.+.|. . +..|..|| .+-..+.. ..+....|..+.+.+
T Consensus 77 -~---~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 77 -S---SLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred -e---ecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
Confidence 1 2222 24778888875433321343433 2 33566776 33333322 222344566665433
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=80.86 E-value=1.6e+02 Score=36.87 Aligned_cols=159 Identities=10% Similarity=0.111 Sum_probs=101.6
Q ss_pred CCCceeEEEEe---c----CCCEEEEEeCCeEEEEECCCc---------------eeEEEEe---CCCCCeEEEEEeCCC
Q 001184 832 AEDVVPCVALS---K----NDSYVMSAGGGKVSLFNMMNF---------------KVMTTFM---SPPPASTFLAFHPQD 886 (1130)
Q Consensus 832 ~~~~i~~l~~s---~----dg~~la~~~dg~i~iwd~~~~---------------~~~~~~~---~~~~~i~~l~~sp~~ 886 (1130)
...+|..++|+ . ..++|++-....+.|+...-. ..+..+. ....+...++|+|.+
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 57788888887 2 235777777888888872211 2233333 223467789999988
Q ss_pred CcEEEEEeCCCcEEEEEeecC-----eEEEEEecCC----------CCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcc
Q 001184 887 NNIIAIGMEDSTIQIYNVRVD-----EVKTKLKGHQ----------KHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEK 951 (1130)
Q Consensus 887 ~~~lasg~~dg~v~iwd~~~~-----~~~~~l~~h~----------~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~ 951 (1130)
...+|+.+..|...||++... ........+. +....+.|.++.+.|+.++.. .+.++|+++...
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~d~~~~~~ 236 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLIDFESNWQ 236 (765)
T ss_pred cceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-ceEEEECCCCCc
Confidence 889999999999999999211 1111111122 233478899888888888765 588999998654
Q ss_pred cceeeEeccCCCCCCCeEEEEEcCCC-cEEEEEcCCcEEEEECCC
Q 001184 952 RKSIAIQLPAGKLPVGETRVQFHSDQ-VRLLVNHETQLAIYDGSK 995 (1130)
Q Consensus 952 ~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~d~~i~v~d~~~ 995 (1130)
... +........+..+.-+++. .+++.-....|...++..
T Consensus 237 ~~~----l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 237 TEY----LVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred cch----hccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 322 2222333678888888772 222222346777777776
|
These proteins are found in fungi. |
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=80.55 E-value=1.3e+02 Score=35.58 Aligned_cols=155 Identities=8% Similarity=-0.011 Sum_probs=89.1
Q ss_pred eEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCC-Cccccee
Q 001184 877 STFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDT-WEKRKSI 955 (1130)
Q Consensus 877 i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~-~~~~~~~ 955 (1130)
..+++.++ ++..+|....++.++++... +.....+.+ ..++.-.|.++| ++=++..+...++..... ++. ...
T Consensus 336 ~~s~avS~-dg~~~A~v~~~~~l~vg~~~-~~~~~~~~~--~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~-~~v 409 (557)
T PRK13615 336 ADAATLSA-DGRQAAVRNASGVWSVGDGD-RDAVLLDTR--PGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVG-HPV 409 (557)
T ss_pred cccceEcC-CCceEEEEcCCceEEEecCC-CcceeeccC--CccccCcCcCCC-CEEEEeCCCceEEEEecCCCce-EEe
Confidence 37889999 77778877777878777665 222222322 246677787777 444444333344444333 221 111
Q ss_pred eEeccCCCCCCCeEEEEEcCCCcEEEE-Ec---CCcEEEEECC--Cc--eee-eeee-cCCCCCCCeEEEEECCCCCEEE
Q 001184 956 AIQLPAGKLPVGETRVQFHSDQVRLLV-NH---ETQLAIYDGS--KM--ECI-RQWV-PQDVLSSPISSAAYSCNSQLIY 1025 (1130)
Q Consensus 956 ~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~---d~~i~v~d~~--~~--~~~-~~~~-~~~~~~~~v~~v~~s~dg~~l~ 1025 (1130)
..... ....|..+..|+||..++. .+ .++|.|--+. .+ ..+ .... .... ...+.++.|..++.+.+
T Consensus 410 ~v~~~---~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~-l~~v~sl~W~~~~~laV 485 (557)
T PRK13615 410 AVSWT---ATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLAS-PGTPLDATWVDELDVAT 485 (557)
T ss_pred ecccc---CCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccC-cCcceeeEEcCCCEEEE
Confidence 11111 2257999999999999887 22 3556653332 23 122 1111 1111 34889999999999777
Q ss_pred EEe---CCCcEEEEeCCCc
Q 001184 1026 ATF---TDGSIGVFDADSL 1041 (1130)
Q Consensus 1026 t~~---~Dg~i~vwd~~~~ 1041 (1130)
.+. .+..+++..+...
T Consensus 486 l~~~~~~~~~v~~v~v~g~ 504 (557)
T PRK13615 486 LTLAPDGERQVELHQVGGP 504 (557)
T ss_pred EeccCCCCceEEEEECCCc
Confidence 663 3456777777633
|
|
| >cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID) | Back alignment and domain information |
|---|
Probab=80.53 E-value=3.9 Score=37.86 Aligned_cols=59 Identities=19% Similarity=0.274 Sum_probs=42.9
Q ss_pred ccchhhhHHHHHhHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhccccccc
Q 001184 67 RYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRE 126 (1130)
Q Consensus 67 ~~~~~~~~~i~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 126 (1130)
++.. ++|.|+-+.||||+..|...+|..++++--.-+.....+.++.|+.+..-....+
T Consensus 25 EL~~-lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~ 83 (133)
T cd08044 25 ELSQ-LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKE 83 (133)
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhh
Confidence 4444 9999999999999999999999999986544343334567777766555544433
|
The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various |
| >PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID | Back alignment and domain information |
|---|
Probab=80.52 E-value=1.7 Score=40.81 Aligned_cols=57 Identities=16% Similarity=0.275 Sum_probs=41.0
Q ss_pred ccchhhhHHHHHhHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhccccc
Q 001184 67 RYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENF 124 (1130)
Q Consensus 67 ~~~~~~~~~i~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~ 124 (1130)
++.. ++|.|+-+.||+|+..+..++|..++.+--.-+.....+++++|..+......
T Consensus 36 EL~~-lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l 92 (142)
T PF04494_consen 36 ELSR-LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHL 92 (142)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHH
Confidence 3344 89999999999999999999999999976555544455667777655444333
|
The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F. |
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.39 E-value=41 Score=42.97 Aligned_cols=71 Identities=13% Similarity=0.208 Sum_probs=44.7
Q ss_pred CccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 001184 541 GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV 620 (1130)
Q Consensus 541 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 620 (1130)
..++.+..+...+..+.... .+.+.+|+.........+..... ..+.++..++++..||.+.+||...+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~h~Dgs~~fWd~s~g 266 (993)
T KOG1983|consen 198 EYESLQVLYYSPTKILIGFN-----RGLVVIKDRASKYVQSAYLPNGQ------LESRDGSHFVSYHTDGSYAFWDVSSG 266 (993)
T ss_pred ccccceeeeecCCCcceeee-----eeeeeehhcccccchhhcccccc------cCccCCceEEEEEecCCEEeeecCCC
Confidence 33455555555555444443 56677777554444334433222 11778899999999999999999987
Q ss_pred ce
Q 001184 621 NM 622 (1130)
Q Consensus 621 ~~ 622 (1130)
..
T Consensus 267 ~~ 268 (993)
T KOG1983|consen 267 KL 268 (993)
T ss_pred ce
Confidence 65
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1130 | ||||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 4e-10 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 5e-08 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 4e-10 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 1e-07 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 4e-10 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 7e-08 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 8e-10 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 2e-07 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 9e-10 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 2e-07 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 1e-09 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 2e-07 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 1e-09 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 2e-07 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 1e-09 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 2e-07 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 1e-09 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 2e-07 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 1e-09 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 2e-07 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 1e-09 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 2e-07 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 1e-09 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 2e-07 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 1e-09 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 8e-07 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 1e-09 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 5e-07 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-09 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 3e-07 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 2e-09 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 2e-07 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 3e-09 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 2e-07 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 7e-09 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 3e-05 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 8e-05 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 9e-05 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 2e-07 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 2e-05 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 4e-07 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 4e-07 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 6e-07 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 7e-07 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 1e-06 | ||
| 2pm9_A | 416 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 8e-06 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 2e-05 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 5e-05 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 2e-04 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 2e-04 | ||
| 4aez_A | 401 | Crystal Structure Of Mitotic Checkpoint Complex Len | 3e-04 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 4e-04 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 5e-04 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 5e-04 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 5e-04 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 6e-04 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 6e-04 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 6e-04 |
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1130 | |||
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.98 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.98 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.98 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.98 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.98 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.95 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.95 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.95 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.95 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.95 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.95 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.95 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.95 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.92 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.92 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.91 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.9 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.9 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.9 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.89 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.88 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.88 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.88 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.87 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.87 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.86 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.86 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.85 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.85 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.85 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.84 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.84 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.83 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.83 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.81 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.81 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.81 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.81 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.81 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.81 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.81 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.81 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.8 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.8 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.79 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.78 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.77 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.76 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.76 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.75 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.74 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.7 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.7 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.69 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.67 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.67 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.66 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.66 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.65 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.65 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.65 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.64 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.64 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.63 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.6 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.58 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.58 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.57 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.57 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.57 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.56 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.56 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.55 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.55 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.54 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.54 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.54 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.53 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.53 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.52 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.51 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.51 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.51 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.5 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.49 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.47 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.46 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.45 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.45 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.42 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.41 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.38 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.36 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.35 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.34 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.32 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.28 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.28 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.27 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.26 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.26 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.25 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.23 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.22 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.22 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.18 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.18 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.16 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.15 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.13 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.13 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.12 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.12 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.1 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.09 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.09 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.09 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.07 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.05 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.04 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.0 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.0 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.98 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.97 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.96 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.96 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.96 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.95 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.9 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.9 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.83 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.78 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.72 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.71 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.71 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.69 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.68 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.65 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.62 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.61 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.6 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.59 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.58 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.56 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.56 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.56 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.55 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.55 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.5 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.49 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.48 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.47 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.46 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.43 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.43 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.42 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.3 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.28 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.28 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.27 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.23 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.18 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.16 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.15 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.15 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.14 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.12 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.06 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.05 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.03 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.03 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.94 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.93 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.92 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.9 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.88 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.85 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.82 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.79 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.75 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.73 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.68 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.65 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.63 | |
| 2xtc_A | 90 | F-box-like/WD repeat-containing protein TBL1X; tra | 97.62 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.55 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.55 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.48 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.41 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.4 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.39 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.34 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.31 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.3 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.3 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.23 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.15 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.02 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.02 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.95 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.76 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.72 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.72 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.67 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.64 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.52 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.49 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.49 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.42 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.32 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.31 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.3 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.27 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 96.12 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 95.92 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 95.86 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 95.79 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 95.77 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.72 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 95.66 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 95.62 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 95.41 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 95.22 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.09 | |
| 1uuj_A | 88 | Platelet-activating factor acetylhydrolase IB ALP | 95.09 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 94.98 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 94.71 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 93.91 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 93.7 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 93.59 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 92.98 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 92.61 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 91.68 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 91.48 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 91.45 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 90.35 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 87.41 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 87.25 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 86.42 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 85.2 | |
| 2nxp_A | 156 | Transcription initiation factor TFIID subunit 5; t | 84.91 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 84.3 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 83.81 | |
| 2j4b_A | 138 | TAF5, transcription initiation factor TFIID subuni | 82.15 |
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-67 Score=634.38 Aligned_cols=565 Identities=23% Similarity=0.365 Sum_probs=482.0
Q ss_pred eeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCC
Q 001184 342 CTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1130)
Q Consensus 342 ~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 421 (1130)
+..+|.+.|+|++|||||++ ||+|+.|++|+|||. +++.+. .+.+|.+.|++++|+|||
T Consensus 11 ~L~GH~~~V~~~a~spdg~~-las~~~d~~v~iWd~-~~~~~~-------------------~l~gh~~~V~~l~fspdg 69 (577)
T 2ymu_A 11 RLEAHSSSVRGVAFSPDGQT-IASASDDKTVKLWNR-NGQLLQ-------------------TLTGHSSSVWGVAFSPDG 69 (577)
T ss_dssp EECCCSSCEEEEEECTTSSC-EEEEETTSEEEEECT-TSCEEE-------------------EEECCSSCEEEEEECTTS
T ss_pred EECCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEEC-CCCEEE-------------------EEeCCCCCEEEEEECCCC
Confidence 34469999999999999994 999999999999995 566554 478999999999999999
Q ss_pred CEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCCCcCEE
Q 001184 422 NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVY 501 (1130)
Q Consensus 422 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~~~v~ 501 (1130)
++||+++.|++|+|||+. ++.+ ..+.+|.+.|.+++|+||++ +|++++.|+.+++|+..+.......+|...+.
T Consensus 70 ~~las~~~d~~i~vWd~~-~~~~---~~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~ 143 (577)
T 2ymu_A 70 QTIASASDDKTVKLWNRN-GQLL---QTLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRNGQLLQTLTGHSSSVW 143 (577)
T ss_dssp SEEEEEETTSCEEEEETT-SCEE---EEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTCCEEEEECCCSSCEE
T ss_pred CEEEEEeCCCEEEEEECC-CCEE---EEEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccccceeeeccCCCCcee
Confidence 999999999999999964 4433 36889999999999999999 89999999999999988888888999999999
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeE
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKR 581 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1130)
.+.+.+ ++..+++++.++.+++|+... ........+...+.++.++|+++++++++. ++.|++||. +++.+.
T Consensus 144 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~~~~~ 215 (577)
T 2ymu_A 144 GVAFSP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NGQLLQ 215 (577)
T ss_dssp EEEECT--TSSCEEEEETTSEEEEECTTS-CEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TSCEEE
T ss_pred eeeeec--CCccceecccccceeccccce-eeeeeccCCCcceeeeeecCCCCEEEEEcC----CCEEEEEeC-CCcEEE
Confidence 999865 457899999999999998654 344556677888999999999999999986 899999995 677888
Q ss_pred EEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 582 TYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 582 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
.+.+|.. .+.+++|+|+++++++++.|+.|++||. +++.+..+..+. ..|.+++|+|+++.+++++.|+.+++|+.
T Consensus 216 ~~~~~~~-~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~--~~v~~v~~~~d~~~l~~~~~d~~i~~w~~ 291 (577)
T 2ymu_A 216 TLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS--SSVNGVAFRPDGQTIASASDDKTVKLWNR 291 (577)
T ss_dssp EEECCSS-CEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEecCCC-CEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCC--CCEEEEEEcCCCCEEEEEeCCCEEEEEeC
Confidence 8888766 8999999999999999999999999996 466777776554 48999999999999999999999999995
Q ss_pred CCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCc
Q 001184 662 ADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKT 741 (1130)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 741 (1130)
... ....
T Consensus 292 ~~~--~~~~----------------------------------------------------------------------- 298 (577)
T 2ymu_A 292 NGQ--LLQT----------------------------------------------------------------------- 298 (577)
T ss_dssp TSC--EEEE-----------------------------------------------------------------------
T ss_pred CCc--EEEE-----------------------------------------------------------------------
Confidence 322 0000
Q ss_pred cceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCC
Q 001184 742 KPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNG 821 (1130)
Q Consensus 742 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~ 821 (1130)
+ .+|...|.+++|+|++..+++++.|+.+++|+.....
T Consensus 299 ------------------~---~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~--------------------- 336 (577)
T 2ymu_A 299 ------------------L---TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH--------------------- 336 (577)
T ss_dssp ------------------E---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE---------------------
T ss_pred ------------------E---ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe---------------------
Confidence 0 2377889999999999999999999999999854311
Q ss_pred cceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEE
Q 001184 822 LLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQ 900 (1130)
Q Consensus 822 ~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~ 900 (1130)
+.. ..+|...+.+++|+|+|+++++++ ||.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|+
T Consensus 337 -~~~---~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~ 410 (577)
T 2ymu_A 337 -LQT---LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVK 410 (577)
T ss_dssp -EEE---ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEE
T ss_pred -eEE---EeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEE
Confidence 110 125788999999999999999998 899999996 5678888999999999999999 899999999999999
Q ss_pred EEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEE
Q 001184 901 IYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRL 980 (1130)
Q Consensus 901 iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 980 (1130)
+||. +++.+..+.+|...|++++|+||+++|++++.|++|++||... +.. .... . +...+.+++|+||+++|
T Consensus 411 ~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~~~----~~~~-~-~~~~v~~~~~spd~~~l 482 (577)
T 2ymu_A 411 LWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-QLL----QTLT-G-HSSSVRGVAFSPDGQTI 482 (577)
T ss_dssp EECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-CEE----EEEE-C-CSSCEEEEEECTTSCEE
T ss_pred EEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-CEE----EEEc-C-CCCCEEEEEEcCCCCEE
Confidence 9995 5788899999999999999999999999999999999999754 211 1111 2 33789999999999999
Q ss_pred EE-EcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCC
Q 001184 981 LV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPN 1059 (1130)
Q Consensus 981 ~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1059 (1130)
++ +.|+.|++||. +++.+..+.+| ...|++++|+|||++||+++.||.|++||. +++.+..+.
T Consensus 483 as~~~d~~i~iw~~-~~~~~~~~~~h---~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~----------- 546 (577)
T 2ymu_A 483 ASASDDKTVKLWNR-NGQLLQTLTGH---SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT----------- 546 (577)
T ss_dssp EEEETTSEEEEEET-TSCEEEEEECC---SSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE-----------
T ss_pred EEEeCCCEEEEEcC-CCCEEEEEeCC---CCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc-----------
Confidence 98 57999999995 67888888776 789999999999999999999999999996 566665554
Q ss_pred CceeeeEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 001184 1060 SQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIE 1091 (1130)
Q Consensus 1060 ~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~ 1091 (1130)
+|...+..++|+| |+.+|+|++.|++|++||
T Consensus 547 ~h~~~v~~~~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 547 GHSSSVWGVAFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred CCCCCEEEEEEcC-CCCEEEEEeCCCEEEEeC
Confidence 2445567789999 578999999999999997
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-64 Score=614.03 Aligned_cols=575 Identities=14% Similarity=0.160 Sum_probs=459.9
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
+.+.+.+++|||||+ +||+++ ++.|+|||+.+++... .+.+|...|++++|||||++||
T Consensus 17 ~~g~~~~~~~spdg~-~l~~~~-~~~v~l~~~~~~~~~~-------------------~~~~h~~~v~~~~~spdg~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTE-------------------IYTEHSHQTTVAKTSPSGYYCA 75 (611)
T ss_dssp CTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTCSSCCE-------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred ccCceeEEeeCCCCC-EEEeCC-CCEEEEecCCCcccCe-------------------EecCCCCceEEEEECCCCcEEE
Confidence 567889999999998 478887 5699999998776554 5789999999999999999999
Q ss_pred EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCC----CcEEEEecCCCeeeEecCCCcCEE
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD----KLIRVWDLSGRKLFQFEGHEAPVY 501 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d----~~v~iwd~~~~~~~~~~~h~~~v~ 501 (1130)
+|+.|++|+|||+.+++.. ....+.+|.+.|.+++|+||++ .|++++.+ +.|++|| .+..+..+.+|...|.
T Consensus 76 sg~~d~~v~lWd~~~~~~~-~~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd-~~~~~~~l~gh~~~v~ 151 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHI-LKTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD-TGTSNGNLTGQARAMN 151 (611)
T ss_dssp EEETTSEEEEEESSSTTCC-EEEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT-TCCBCBCCCCCSSCEE
T ss_pred EEeCCCCEEEeECCCCcce-eeEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee-CCCCcceecCCCCCce
Confidence 9999999999999765543 2236789999999999999999 67777654 4788888 5667788999999999
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeE
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKR 581 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1130)
+++|+|... ..|++++.|++|++||....+....+..|...|.+++|+|+|++|++++. |+.|++||..+++.+.
T Consensus 152 ~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g~~~~ 226 (611)
T 1nr0_A 152 SVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTG 226 (611)
T ss_dssp EEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEE
T ss_pred EEEECCCCC-eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEEEECCCCcEee
Confidence 999976432 36999999999999999888878888999999999999999999999986 8999999999999888
Q ss_pred EEe-------cccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCC-CCCcceEEEcCCCCEEEEEeCC
Q 001184 582 TYI-------GFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGG-LPSLPRLRFNKEGNLLVVTTAD 653 (1130)
Q Consensus 582 ~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~i~~v~~s~~~~~l~~~~~d 653 (1130)
.+. +|.. .|.+++|+|++++|++++.|++|++||+.+++.+..+..+.. ......+.| ++..+++++.|
T Consensus 227 ~~~~~~~~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d 303 (611)
T 1nr0_A 227 VFEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISAN 303 (611)
T ss_dssp ECBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETT
T ss_pred eeccccccccccCC-CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCC
Confidence 874 4544 899999999999999999999999999999998888765421 112345555 67889999999
Q ss_pred CcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCccc
Q 001184 654 QGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRN 733 (1130)
Q Consensus 654 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1130)
+.+++|+...+. ....
T Consensus 304 ~~i~~~~~~~~~-~~~~--------------------------------------------------------------- 319 (611)
T 1nr0_A 304 GFINFVNPELGS-IDQV--------------------------------------------------------------- 319 (611)
T ss_dssp CCEEEEETTTTE-EEEE---------------------------------------------------------------
T ss_pred CcEEEEeCCCCC-cceE---------------------------------------------------------------
Confidence 999999976541 1000
Q ss_pred ccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCccccccccc
Q 001184 734 LEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAP 813 (1130)
Q Consensus 734 ~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 813 (1130)
+ .+|...|.+++|+|+|+.|++++.|+.|++||+..+
T Consensus 320 --------------------------~---~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~-------------- 356 (611)
T 1nr0_A 320 --------------------------R---YGHNKAITALSSSADGKTLFSADAEGHINSWDISTG-------------- 356 (611)
T ss_dssp --------------------------E---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--------------
T ss_pred --------------------------E---cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC--------------
Confidence 0 237889999999999999999999999999986542
Q ss_pred ccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEE---EeCCCCCeEEEEEeCCCCcEE
Q 001184 814 QHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTT---FMSPPPASTFLAFHPQDNNII 890 (1130)
Q Consensus 814 ~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~---~~~~~~~i~~l~~sp~~~~~l 890 (1130)
.... .+..+|...|.+++|++++.++..+.|+.+++|++.++..... .........+++|+| ++.++
T Consensus 357 --------~~~~-~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~ 426 (611)
T 1nr0_A 357 --------ISNR-VFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-DGDIA 426 (611)
T ss_dssp --------CEEE-CSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-TSSCE
T ss_pred --------ceee-ecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-CCcEE
Confidence 2111 1223688999999999887655554599999999877543210 011234567899999 77777
Q ss_pred EEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEE
Q 001184 891 AIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETR 970 (1130)
Q Consensus 891 asg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~ 970 (1130)
+++ .++.+++|+ .++ +..+. |...+.+++|+|||++|++++.|++|++||+.++.... ... ..+...|.+
T Consensus 427 ~~~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~--~~h~~~v~~ 496 (611)
T 1nr0_A 427 VAA-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT--IVHPAEITS 496 (611)
T ss_dssp EEE-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE--EECSSCEEE
T ss_pred EEE-eCceEEEEe--CCc-eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec--cCCCCceEE
Confidence 666 467899998 445 55555 88899999999999999999999999999998753211 111 124478999
Q ss_pred EEEcCCCcEEEE-EcCCcEEEEECCC-ceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCccccc-cc
Q 001184 971 VQFHSDQVRLLV-NHETQLAIYDGSK-MECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRC-RI 1047 (1130)
Q Consensus 971 ~~~s~d~~~l~~-~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~-~~ 1047 (1130)
++|+|||++|++ +.|+.+++|++.+ ++.+... ....|...|++++|+|||++||+|+.|++|++||+.++.... ..
T Consensus 497 v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~-~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~ 575 (611)
T 1nr0_A 497 VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTN-SWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII 575 (611)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEGGGTTEESCCC-CCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEE
T ss_pred EEECCCCCEEEEEcCCCCEEEEEcCCCCceeeee-eeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchh
Confidence 999999999998 5799999999987 6654431 112258899999999999999999999999999998875322 11
Q ss_pred CCCcccccCCCCCc-eeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 001184 1048 APSAYMSQASPNSQ-TVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1093 (1130)
Q Consensus 1048 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~ 1093 (1130)
. .+| ...+.+++|+|+ +. |++++.|++|++|++.
T Consensus 576 ~----------~~h~~~~v~~v~fs~d-~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 576 K----------GAHAMSSVNSVIWLNE-TT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp T----------TSSTTSCEEEEEEEET-TE-EEEEETTSCEEEEECC
T ss_pred h----------ccCcccCeeEEEEcCC-CE-EEEecCCCCEEEEecc
Confidence 1 123 345677889984 55 9999999999999973
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-62 Score=596.49 Aligned_cols=561 Identities=15% Similarity=0.181 Sum_probs=449.5
Q ss_pred cccccccCCCCCcccccCC-------cccceeeec-cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccc
Q 001184 317 VDEATYPVPSQQATWSLDD-------LPRAVACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPF 388 (1130)
Q Consensus 317 ~~~~~~s~~~~~~~~~~~~-------~~~~~~~~~-~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~ 388 (1130)
...++|+|+|+.++...+. ........+ +|...|++++|||||+ +||+|+.||+|+|||+.+++....
T Consensus 21 ~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~--- 96 (611)
T 1nr0_A 21 AVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILK--- 96 (611)
T ss_dssp CCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEE---
T ss_pred eeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCc-EEEEEeCCCCEEEeECCCCcceee---
Confidence 3457888888644432221 123344444 6999999999999998 599999999999999976553321
Q ss_pred eeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCC----CeEEEEEecCCccceeeeeeecCCCCeeEEEEec
Q 001184 389 KIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTK----HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY 464 (1130)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d----~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~ 464 (1130)
..+.+|.+.|.+++|+|||++||+++.+ +.|++|| .++... .+.+|...|++++|+|
T Consensus 97 --------------~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~---~l~gh~~~v~~v~f~p 157 (611)
T 1nr0_A 97 --------------TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNG---NLTGQARAMNSVDFKP 157 (611)
T ss_dssp --------------EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCB---CCCCCSSCEEEEEECS
T ss_pred --------------EeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcc---eecCCCCCceEEEECC
Confidence 1467899999999999999999999865 4788887 444333 5789999999999999
Q ss_pred CCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeec-----
Q 001184 465 PNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD----- 538 (1130)
Q Consensus 465 d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~----- 538 (1130)
++.. .|++|+.|++|++|| ..++++..+.+|...|.+++|+| ++.+|++++.|++|++||+.+++....+.
T Consensus 158 ~~~~-~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fsp--dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~ 234 (611)
T 1nr0_A 158 SRPF-RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK 234 (611)
T ss_dssp SSSC-EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSS
T ss_pred CCCe-EEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECC--CCCEEEEEECCCcEEEEECCCCcEeeeecccccc
Confidence 9874 599999999999999 77888899999999999999975 56899999999999999998887776663
Q ss_pred --CCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCc--eeEEEEEcCCCCEEEEEeCCCcEEE
Q 001184 539 --APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK--SAGVVQFDTTRNRILAAGEDNQIKF 614 (1130)
Q Consensus 539 --~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~v 614 (1130)
.|...|.+++|+|+|++|++++. |+.|++||+.+++.+..+..+... ....+.| +++.+++++.|+.+++
T Consensus 235 ~~~h~~~V~~v~~spdg~~l~s~s~----D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~ 308 (611)
T 1nr0_A 235 NVAHSGSVFGLTWSPDGTKIASASA----DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINF 308 (611)
T ss_dssp SCSSSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEE
T ss_pred ccccCCCEEEEEECCCCCEEEEEeC----CCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEE
Confidence 68889999999999999999986 899999999999998888654221 2344555 6789999999999999
Q ss_pred EeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceee
Q 001184 615 WDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVT 694 (1130)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1130)
||...++....+..|. ..|.+++|+|++++|++++.|+.|++||+.++.. ...+
T Consensus 309 ~~~~~~~~~~~~~gh~--~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~-~~~~----------------------- 362 (611)
T 1nr0_A 309 VNPELGSIDQVRYGHN--KAITALSSSADGKTLFSADAEGHINSWDISTGIS-NRVF----------------------- 362 (611)
T ss_dssp EETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-EECS-----------------------
T ss_pred EeCCCCCcceEEcCCC--CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce-eeec-----------------------
Confidence 9999988777776554 4899999999999999999999999999876521 0000
Q ss_pred ccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEE
Q 001184 695 TITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLL 774 (1130)
Q Consensus 695 ~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 774 (1130)
...|...|.+++
T Consensus 363 --------------------------------------------------------------------~~~h~~~v~~~~ 374 (611)
T 1nr0_A 363 --------------------------------------------------------------------PDVHATMITGIK 374 (611)
T ss_dssp --------------------------------------------------------------------SCSCSSCEEEEE
T ss_pred --------------------------------------------------------------------ccCCcceEEEEE
Confidence 022777899999
Q ss_pred EeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCC
Q 001184 775 YTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGG 854 (1130)
Q Consensus 775 ~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg 854 (1130)
|++++ .+++++.|+.+++|+........... ... .......+++++|+|+.++++.++
T Consensus 375 ~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~-----------------~~~----~~~~~~~~~~~s~dg~~~~~~~~~ 432 (611)
T 1nr0_A 375 TTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKA-----------------VAN----KLSSQPLGLAVSADGDIAVAACYK 432 (611)
T ss_dssp ECTTS-CEEEEETTTEEEEECSSSSSSCTTSC-----------------CEE----ECSSCEEEEEECTTSSCEEEEESS
T ss_pred ECCCC-cEEEEEcCCceEEeecCCccccccce-----------------eee----ecCCCCcEEEEeCCCcEEEEEeCc
Confidence 99766 68899999999999875432211000 000 123346789999999988888899
Q ss_pred eEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeE--EEEEecCCCCeeEEEEccCCCeE
Q 001184 855 KVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV--KTKLKGHQKHITGLAFSTNLNIL 932 (1130)
Q Consensus 855 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~--~~~l~~h~~~V~~l~~s~dg~~L 932 (1130)
.+++|+ .++ +..+. |...+.+++|+| ++++||+|+.|++|++||+.++.. +.. .+|...|++++|+|||++|
T Consensus 433 ~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~l 506 (611)
T 1nr0_A 433 HIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFL 506 (611)
T ss_dssp EEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEE
T ss_pred eEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEE
Confidence 999999 344 45554 778899999999 899999999999999999998754 233 6899999999999999999
Q ss_pred EEEeCCCcEEEEECCC-CcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE-EcCCcEEEEECCCcee-e-eeeecCCCC
Q 001184 933 VSSGSDAQLIFWNTDT-WEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGSKMEC-I-RQWVPQDVL 1008 (1130)
Q Consensus 933 ~s~s~Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~-~-~~~~~~~~~ 1008 (1130)
++++.|++|++|++.+ ++.... .....+...|.+++|+|||++|++ +.|++|++|++.++.. + ..+ .+|
T Consensus 507 as~s~d~~v~~w~~~~~~~~~~~----~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~---~~h 579 (611)
T 1nr0_A 507 VATDQSRKVIPYSVANNFELAHT----NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK---GAH 579 (611)
T ss_dssp EEEETTSCEEEEEGGGTTEESCC----CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEET---TSS
T ss_pred EEEcCCCCEEEEEcCCCCceeee----eeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhh---ccC
Confidence 9999999999999986 332111 011224578999999999999998 6799999999987653 2 232 244
Q ss_pred -CCCeEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 001184 1009 -SSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039 (1130)
Q Consensus 1009 -~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~ 1039 (1130)
...|++++|+||++ |++++.|++|++|++.
T Consensus 580 ~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 580 AMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp TTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred cccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 68999999999998 9999999999999973
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-62 Score=595.22 Aligned_cols=526 Identities=23% Similarity=0.377 Sum_probs=451.2
Q ss_pred eeeec-cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEc
Q 001184 340 VACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1130)
Q Consensus 340 ~~~~~-~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 418 (1130)
+++.+ +|...|++++|||||+ +||+|+.|++|+|||.. ++.+. .+.+|...|.+++|+
T Consensus 49 ~~~~l~gh~~~V~~l~fspdg~-~las~~~d~~i~vWd~~-~~~~~-------------------~~~~~~~~v~~~~~s 107 (577)
T 2ymu_A 49 LLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRN-GQLLQ-------------------TLTGHSSSVRGVAFS 107 (577)
T ss_dssp EEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT-SCEEE-------------------EECCCSSCEEEEEEC
T ss_pred EEEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEECC-CCEEE-------------------EEECCCCCEEEEEEC
Confidence 34444 5999999999999998 59999999999999964 55443 477999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCCCc
Q 001184 419 PDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEA 498 (1130)
Q Consensus 419 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~~ 498 (1130)
||+++|++++.|+.+++|+..... .....+|...|..+.|+|++. .+++++.++.+++|+..+........|..
T Consensus 108 ~d~~~l~~~~~d~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (577)
T 2ymu_A 108 PDGQTIASASDDKTVKLWNRNGQL----LQTLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNRNGQLLQTLTGHSS 181 (577)
T ss_dssp TTSSEEEEEETTSCEEEEETTCCE----EEEECCCSSCEEEEEECTTSS--CEEEEETTSEEEEECTTSCEEEEEECCSS
T ss_pred CCCCEEEEEcCCCceeecccccce----eeeccCCCCceeeeeeecCCc--cceecccccceeccccceeeeeeccCCCc
Confidence 999999999999999999976643 224678999999999999999 78999999999999988888888889999
Q ss_pred CEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc
Q 001184 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1130)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1130)
.|.++++.+ ++.+|++++.|+.|++||.. .+....+..+...|.+++|+|++++|++++. ++.|++||. +++
T Consensus 182 ~v~~~~~~~--~~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~----d~~i~~w~~-~~~ 253 (577)
T 2ymu_A 182 SVWGVAFSP--DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASD----DKTVKLWNR-NGQ 253 (577)
T ss_dssp CEEEEEECT--TSSCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEECT-TSC
T ss_pred ceeeeeecC--CCCEEEEEcCCCEEEEEeCC-CcEEEEEecCCCCEEEEEECCCCCEEEEEeC----CCEEEEEeC-CCC
Confidence 999999865 55799999999999999964 5566677888899999999999999999986 899999995 577
Q ss_pred eeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEE
Q 001184 579 LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKI 658 (1130)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~i 658 (1130)
.+..+.+|.. .+.+++|+|+++.+++++.|+.|++||. +++.+..+..+. ..|.+++|+|+++.+++++.|+.|++
T Consensus 254 ~~~~~~~~~~-~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~--~~v~~~~~~~~~~~l~t~~~d~~i~~ 329 (577)
T 2ymu_A 254 LLQTLTGHSS-SVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS--SSVWGVAFSPDGQTIASASDDKTVKL 329 (577)
T ss_dssp EEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEEEEecCCC-CEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCC--CCeEEEEECCCCCEEEEEeCCCeEEE
Confidence 8888888765 8999999999999999999999999996 456666666554 48999999999999999999999999
Q ss_pred EEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccC
Q 001184 659 LANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDIS 738 (1130)
Q Consensus 659 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 738 (1130)
|+..... . ..
T Consensus 330 w~~~~~~-~-~~-------------------------------------------------------------------- 339 (577)
T 2ymu_A 330 WNRNGQH-L-QT-------------------------------------------------------------------- 339 (577)
T ss_dssp EETTSCE-E-EE--------------------------------------------------------------------
T ss_pred EeCCCCe-e-EE--------------------------------------------------------------------
Confidence 9965430 0 00
Q ss_pred CCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccC
Q 001184 739 DKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQP 818 (1130)
Q Consensus 739 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~ 818 (1130)
+ ..|...+.+++|+|+|+.+++++.++.+++|+...
T Consensus 340 ---------------------~---~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-------------------- 375 (577)
T 2ymu_A 340 ---------------------L---TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-------------------- 375 (577)
T ss_dssp ---------------------E---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC--------------------
T ss_pred ---------------------E---eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC--------------------
Confidence 0 22677889999999999999999999999997421
Q ss_pred CCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCC
Q 001184 819 SNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS 897 (1130)
Q Consensus 819 ~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg 897 (1130)
..+.. ..+|...|.+++|+|||++|++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+
T Consensus 376 ---~~~~~--~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~ 448 (577)
T 2ymu_A 376 ---QLLQT--LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDK 448 (577)
T ss_dssp ---CEEEE--EECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTS
T ss_pred ---CEEEE--ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEcCCC
Confidence 11111 125888999999999999999998 899999996 5678889999999999999999 889999999999
Q ss_pred cEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCC
Q 001184 898 TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQ 977 (1130)
Q Consensus 898 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 977 (1130)
.|++||. +++.+..+.+|...|++++|+||+++|++++.|++|++||... +... ...+ +...|.+++|+|||
T Consensus 449 ~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-~~~~-----~~~~-h~~~v~~l~~s~dg 520 (577)
T 2ymu_A 449 TVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQ-----TLTG-HSSSVRGVAFSPDG 520 (577)
T ss_dssp EEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS-CEEE-----EEEC-CSSCEEEEEECTTS
T ss_pred EEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-CEEE-----EEeC-CCCCEEEEEEcCCC
Confidence 9999996 5778889999999999999999999999999999999999643 3221 1122 33789999999999
Q ss_pred cEEEE-EcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEe
Q 001184 978 VRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFD 1037 (1130)
Q Consensus 978 ~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd 1037 (1130)
++|++ +.|+.|++||. +++.+..+.+| ...|++++|+|||++|++++.|++|++||
T Consensus 521 ~~l~s~~~dg~v~lwd~-~~~~~~~~~~h---~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 521 QTIASASDDKTVKLWNR-NGQLLQTLTGH---SSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SCEEEEETTSEEEEECT-TSCEEEEEECC---SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CEEEEEECcCEEEEEeC-CCCEEEEEcCC---CCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 99998 57999999996 67888888776 78999999999999999999999999997
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-62 Score=645.55 Aligned_cols=615 Identities=12% Similarity=0.149 Sum_probs=502.3
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCE
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 423 (1130)
.+|.+.|++++|||+|+ +||+|+.||+|+|||+.+++.+. .+.+|.+.|.+++|+|||++
T Consensus 612 ~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~ 671 (1249)
T 3sfz_A 612 RPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLL-------------------DIKAHEDEVLCCAFSSDDSY 671 (1249)
T ss_dssp CCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEECTTSSE
T ss_pred ecccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEE-------------------EeccCCCCEEEEEEecCCCE
Confidence 46999999999999998 58999999999999999998765 46799999999999999999
Q ss_pred EEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEE
Q 001184 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYS 502 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~ 502 (1130)
||+|+.|++|++||+.+++.+. .+.+|...|.+++|+|++...++++|+.|+.|++|| .+++++..+.+|...|.+
T Consensus 672 l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~ 748 (1249)
T 3sfz_A 672 IATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNH 748 (1249)
T ss_dssp EEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEE
T ss_pred EEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEE
Confidence 9999999999999999987655 678999999999999965554899999999999999 889999999999999999
Q ss_pred EeecccCCccEEEEEecCCcEEEEEccCCcceeeecCC-------------CccEEEEEEecCCCeEEEeeecCCCCcEE
Q 001184 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP-------------GLWCTTMLYSADGSRLFSCGTSKEGDSHL 569 (1130)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1130)
++|++ ++.++++++.||.|++||+.+......+... ...+.+++|+|+|+.+++++ ++.+
T Consensus 749 ~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-----~~~v 821 (1249)
T 3sfz_A 749 CRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-----KNKV 821 (1249)
T ss_dssp EEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-----TTEE
T ss_pred EEEec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-----CCcE
Confidence 99976 5579999999999999999887765544321 22678899999999999987 7899
Q ss_pred EEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEE
Q 001184 570 VEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVV 649 (1130)
Q Consensus 570 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~ 649 (1130)
.+||..++.....+...+...+.+++|+|+++++++++.||.|++||+.++..+..+..|.. .|.+++|+|+++++++
T Consensus 822 ~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~--~v~~v~~spdg~~l~s 899 (1249)
T 3sfz_A 822 LLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLS--WVHGVMFSPDGSSFLT 899 (1249)
T ss_dssp EEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEE
T ss_pred EEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCcc--ceEEEEECCCCCEEEE
Confidence 99999999998888755566899999999999999999999999999999999888876654 8999999999999999
Q ss_pred EeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCC
Q 001184 650 TTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIE 729 (1130)
Q Consensus 650 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1130)
++.||.|++|++.+.............. ..+.+ ..
T Consensus 900 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~----------------~~~~~-----------------------------~~ 934 (1249)
T 3sfz_A 900 ASDDQTIRVWETKKVCKNSAIVLKQEID----------------VVFQE-----------------------------NE 934 (1249)
T ss_dssp EETTSCEEEEEHHHHHSCCSSSEEEEEE----------------EEEET-----------------------------TE
T ss_pred EeCCCeEEEEEccccceeeeecccceee----------------EEEcC-----------------------------CC
Confidence 9999999999976431110000000000 00111 11
Q ss_pred CcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCccccc
Q 001184 730 KPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATA 809 (1130)
Q Consensus 730 ~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 809 (1130)
..++.....+.+.+|..... ... ..+...+.+++++|++..+++++.+|.+.+|++..+
T Consensus 935 ~~~~~~~~~~~~~~~~~~~~----~~~-------~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~---------- 993 (1249)
T 3sfz_A 935 TMVLAVDNIRGLQLIAGKTG----QID-------YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN---------- 993 (1249)
T ss_dssp EEEEEEESSSSEEEEEESSC----CEE-------EECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTT----------
T ss_pred cEEEEecCCcceEEEecCcc----eEE-------EcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC----------
Confidence 11222222333333333221 010 014567999999999999999999999999986542
Q ss_pred ccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCc
Q 001184 810 AVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNN 888 (1130)
Q Consensus 810 ~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~ 888 (1130)
..... ..+|...|.+++|+|+|+++++++ ||.|++||+.+++... +..|...+.+++|+| ++
T Consensus 994 ------------~~~~~--~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~- 1056 (1249)
T 3sfz_A 994 ------------RVFSS--GVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DS- 1056 (1249)
T ss_dssp ------------SCEEE--CCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-SS-
T ss_pred ------------ceeee--cccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcC-CC-
Confidence 11111 126889999999999999999998 8999999999988764 457889999999999 65
Q ss_pred EEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCe
Q 001184 889 IIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGE 968 (1130)
Q Consensus 889 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v 968 (1130)
.+++++.||.|++||+.+++.+..+.+|.+.|++++|+||+++|++++.|++|++||+.+++..... . .+...+
T Consensus 1057 ~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l-----~-~h~~~v 1130 (1249)
T 3sfz_A 1057 RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL-----K-GHNGCV 1130 (1249)
T ss_dssp EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCC-----C-CCSSCE
T ss_pred cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeee-----c-cCCCcE
Confidence 4678999999999999999999999999999999999999999999999999999999987643322 2 234789
Q ss_pred EEEEEcCCCcEEEE-EcCCcEEEEECCCceeeeeeec------CCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCc
Q 001184 969 TRVQFHSDQVRLLV-NHETQLAIYDGSKMECIRQWVP------QDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSL 1041 (1130)
Q Consensus 969 ~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~------~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~ 1041 (1130)
.+++|+|||.+|++ +.|+.|++||+.+++.+..+.. ...|...|++++|+|||++|++++ |.|++||+.++
T Consensus 1131 ~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g 1208 (1249)
T 3sfz_A 1131 RCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATG 1208 (1249)
T ss_dssp EEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSC
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCC
Confidence 99999999999998 5689999999999988776511 134578999999999999999885 89999999999
Q ss_pred ccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 001184 1042 RLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1093 (1130)
Q Consensus 1042 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~ 1093 (1130)
+.+..+..+ ...+..+.|+| ++.+|++++.||.|++|++.
T Consensus 1209 ~~~~~~~~~-----------~~~i~~~~~s~-dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1209 DSSQTFYTN-----------GTNLKKIHVSP-DFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp BCCCCCCCS-----------SCCCCCCEECS-SSCCEEEECTTCCEEEECCC
T ss_pred ceeeeeecc-----------CCcccEEEECC-CCCEEEEecCCcEEEEEeec
Confidence 987766532 22344578888 57899999999999999985
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-58 Score=560.42 Aligned_cols=559 Identities=11% Similarity=0.181 Sum_probs=472.9
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCC----ceeecccceeeeccccccceeeeeecCCCcc-EEEEEEcC
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLR----ERLVSKPFKIWDMSNCSMMLQAAIVKDSSIS-VSRVAWSP 419 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~v~~sp 419 (1130)
.|...|.+++|||||+ +|++++ ++.|+|||+.++ +... .+.+|... |++++|+|
T Consensus 16 ~~~~~v~~~~~spdg~-~l~~~~-~~~v~v~~~~~~~~~~~~~~-------------------~~~~h~~~~v~~~~~sp 74 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTN-AIAYPC-GKSAFVRCLDDGDSKVPPVV-------------------QFTGHGSSVVTTVKFSP 74 (615)
T ss_dssp CCTTCCCCCEEETTTT-EEEEEE-TTEEEEEECCSSCCSSCSEE-------------------EECTTTTSCEEEEEECS
T ss_pred CccCceeEEEECCCCC-EEEEec-CCeEEEEECCCCCCccccce-------------------EEecCCCceEEEEEECc
Confidence 3889999999999999 477777 889999999987 5443 47899999 99999999
Q ss_pred --CCCEEEEEeCCCeEEEEEecCCc-----cceeeeeeecCCCCeeEEEEecCCCceEEEEEcCC----CcEEEEecCCC
Q 001184 420 --DGNFIGVAFTKHLIHLYTYQGSN-----DLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD----KLIRVWDLSGR 488 (1130)
Q Consensus 420 --dg~~las~~~d~~i~vwd~~~~~-----~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d----~~v~iwd~~~~ 488 (1130)
|+++||+|+.||.|++||+.+++ .......+.+|...|.+++|+|+++ ++++++.+ +.|++|| .++
T Consensus 75 ~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d-~~~ 151 (615)
T 1pgu_A 75 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD-SGN 151 (615)
T ss_dssp STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT-TCC
T ss_pred CCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE-CCC
Confidence 99999999999999999997651 1223346788999999999999999 78888887 7899999 677
Q ss_pred eeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCc---cEEEEEEecC-CCeEEEeeecCC
Q 001184 489 KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL---WCTTMLYSAD-GSRLFSCGTSKE 564 (1130)
Q Consensus 489 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~---~v~~~~~s~~-~~~l~~~~~~~~ 564 (1130)
.+..+.+|...|.+++|++... ..+++++.|+.|++||+.+.+....+..+.. .|.+++|+|+ ++++++++.
T Consensus 152 ~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--- 227 (615)
T 1pgu_A 152 SLGEVSGHSQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS--- 227 (615)
T ss_dssp EEEECCSCSSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET---
T ss_pred cceeeecCCccEEEEEECCCCC-cEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC---
Confidence 8899999999999999976432 3899999999999999999888888888888 9999999999 999999986
Q ss_pred CCcEEEEeeCCCCceeEEE-e---cccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCC--CCCcceE
Q 001184 565 GDSHLVEWNESEGALKRTY-I---GFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGG--LPSLPRL 638 (1130)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~-~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~i~~v 638 (1130)
++.|++||+.+++.+..+ . +|. ..+.+++|+ +++++++++.||.|++||+.+++.+..+..+.. ...+.++
T Consensus 228 -dg~i~vwd~~~~~~~~~~~~~~~~~~-~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 304 (615)
T 1pgu_A 228 -DRKISCFDGKSGEFLKYIEDDQEPVQ-GGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 304 (615)
T ss_dssp -TCCEEEEETTTCCEEEECCBTTBCCC-SCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEE
T ss_pred -CCeEEEEECCCCCEeEEecccccccC-CceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEE
Confidence 899999999999999988 4 544 489999999 999999999999999999999999888876521 1256777
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccc
Q 001184 639 RFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTIL 718 (1130)
Q Consensus 639 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~ 718 (1130)
.|+ ++.++++++.|+.|++|++.++ +....+.+|...+... .+
T Consensus 305 ~~~-~~~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~v~~~-------------~~---------------------- 347 (615)
T 1pgu_A 305 VAT-GNGRIISLSLDGTLNFYELGHD-EVLKTISGHNKGITAL-------------TV---------------------- 347 (615)
T ss_dssp EEE-ETTEEEEEETTSCEEEEETTEE-EEEEEECCCSSCEEEE-------------ET----------------------
T ss_pred EeC-CCCeEEEEECCCCEEEEECCCC-cEEEEEeCCCCCEEEE-------------Ee----------------------
Confidence 886 8999999999999999999875 4444444444332210 11
Q ss_pred cCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCC
Q 001184 719 NGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNR 798 (1130)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~ 798 (1130)
++ +++++.|+.+++|++. .+. ..|...|.+++| +++..+++++.|+.+++|++..
T Consensus 348 --------~~---l~~~~~dg~i~~w~~~---------~~~----~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~ 402 (615)
T 1pgu_A 348 --------NP---LISGSYDGRIMEWSSS---------SMH----QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITK 402 (615)
T ss_dssp --------TT---TEEEETTSCEEETTTT---------EEE----CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEE
T ss_pred --------cC---cEEECCCCeEEEEEch---------hhc----CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEccc
Confidence 11 7889999999999986 112 348899999999 7788999999999999998643
Q ss_pred CCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeE
Q 001184 799 TEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPAST 878 (1130)
Q Consensus 799 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 878 (1130)
.. ....+.+++++|++.+++++.++.+.+|+..+++.+..+. +...+.
T Consensus 403 ~~-------------------------------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 450 (615)
T 1pgu_A 403 HE-------------------------------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGS 450 (615)
T ss_dssp EE-------------------------------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEE
T ss_pred Cc-------------------------------ccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCce
Confidence 21 1126788999999999999889999999999999998887 788899
Q ss_pred EEEEeCCCCcEEEEEeC-CCcEEEEEeecCeEE-EEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceee
Q 001184 879 FLAFHPQDNNIIAIGME-DSTIQIYNVRVDEVK-TKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIA 956 (1130)
Q Consensus 879 ~l~~sp~~~~~lasg~~-dg~v~iwd~~~~~~~-~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~ 956 (1130)
+++|+ +.+|++++. ||.|++||+.+++.. ..+.+|...|++++|+||+++|++++.||.|++||+.+++...
T Consensus 451 ~~~~~---~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~--- 524 (615)
T 1pgu_A 451 AVSLS---QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKT--- 524 (615)
T ss_dssp EEEEC---SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---
T ss_pred EEEEc---CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCccee---
Confidence 99998 679999999 999999999988766 6778899999999999999999999999999999999865432
Q ss_pred EeccCCCCCCCeEEEEEcC----------CCcEEEE-EcCCcEEEEECCCc-eeeeeeecCCCCCCCeEEEEECCCCCEE
Q 001184 957 IQLPAGKLPVGETRVQFHS----------DQVRLLV-NHETQLAIYDGSKM-ECIRQWVPQDVLSSPISSAAYSCNSQLI 1024 (1130)
Q Consensus 957 ~~~~~~~~~~~v~~~~~s~----------d~~~l~~-~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~v~~v~~s~dg~~l 1024 (1130)
.....+...+.+++|+| ++.+|++ +.|+.|++||+.++ +.+..+..| ...|++++|+||++ |
T Consensus 525 --~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h---~~~v~~l~~s~~~~-l 598 (615)
T 1pgu_A 525 --SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH---KDGVNNLLWETPST-L 598 (615)
T ss_dssp --CCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS---TTCEEEEEEEETTE-E
T ss_pred --EeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcC---ccceEEEEEcCCCC-e
Confidence 22222458899999999 9999998 56999999999987 677776555 78999999999999 9
Q ss_pred EEEeCCCcEEEEeCCC
Q 001184 1025 YATFTDGSIGVFDADS 1040 (1130)
Q Consensus 1025 ~t~~~Dg~i~vwd~~~ 1040 (1130)
++++.||.|++|++.+
T Consensus 599 ~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 599 VSSGADACIKRWNVVL 614 (615)
T ss_dssp EEEETTSCEEEEEEC-
T ss_pred EEecCCceEEEEeeec
Confidence 9999999999999875
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-56 Score=593.39 Aligned_cols=570 Identities=18% Similarity=0.261 Sum_probs=471.2
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
.+.+|.+.|++++|||||++||+|+.||+|++||+.+++.+. .+.+|.+.|.+++|+|+++ ++++++.|++|++|
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIW 684 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEE
Confidence 578999999999999999999999999999999999987554 6789999999999999999 89999999999999
Q ss_pred e-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeec
Q 001184 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
| .+++.+..+.+|...|.+++|++..++.++++++.|+.|++||++++.....+..|...|.+++|+|+++++++++.
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~- 763 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA- 763 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES-
T ss_pred ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC-
Confidence 9 89999999999999999999998778889999999999999999999999999999999999999999999999986
Q ss_pred CCCCcEEEEeeCCCCceeEEEeccc------------CceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccC
Q 001184 563 KEGDSHLVEWNESEGALKRTYIGFR------------KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEG 630 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 630 (1130)
++.|++||+.+++....+.... ...+.+++|+|+++.+++++ ++.+++||+.++..+..+.. +
T Consensus 764 ---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~-~ 838 (1249)
T 3sfz_A 764 ---DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHT-G 838 (1249)
T ss_dssp ---SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEEC-S
T ss_pred ---CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcC-C
Confidence 8999999999988777664321 12577899999999999887 68999999999988877753 3
Q ss_pred CCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCC
Q 001184 631 GLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSS 710 (1130)
Q Consensus 631 ~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~ 710 (1130)
+...+.+++|+|++.++++++.||.|++|++.++. ....+
T Consensus 839 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~-~~~~~--------------------------------------- 878 (1249)
T 3sfz_A 839 HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL-KVADC--------------------------------------- 878 (1249)
T ss_dssp SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTE-EEEEE---------------------------------------
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc-eeeec---------------------------------------
Confidence 34489999999999999999999999999987652 11111
Q ss_pred CCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCe
Q 001184 711 PARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGV 790 (1130)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~ 790 (1130)
.+|...|.+++|+|+|..+++++.||.
T Consensus 879 -----------------------------------------------------~~h~~~v~~v~~spdg~~l~s~s~dg~ 905 (1249)
T 3sfz_A 879 -----------------------------------------------------RGHLSWVHGVMFSPDGSSFLTASDDQT 905 (1249)
T ss_dssp -----------------------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred -----------------------------------------------------CCCccceEEEEECCCCCEEEEEeCCCe
Confidence 226677888888888888888888888
Q ss_pred EEeeecCCCCCCCCcccc------------------cccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe
Q 001184 791 QKLWKWNRTEQNPSGKAT------------------AAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG 852 (1130)
Q Consensus 791 i~iw~~~~~~~~~~~~~~------------------~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~ 852 (1130)
+++|++............ .......+...++.... .+...+.+++++|+++++++|+
T Consensus 906 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~sp~g~~l~~g~ 980 (1249)
T 3sfz_A 906 IRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDY-----LPEAQVSCCCLSPHLEYVAFGD 980 (1249)
T ss_dssp EEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEE-----ECCSCEEEEEECTTSSEEEEEE
T ss_pred EEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEE-----cccCcEEEEEEcCCCCEEEEEc
Confidence 888876532111000000 00011222333333222 2466799999999999999998
Q ss_pred -CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCe
Q 001184 853 -GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNI 931 (1130)
Q Consensus 853 -dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~ 931 (1130)
+|.|++||+.+++....+.+|...|++++|+| ++++|++++.||.|++||+.+++.. .+.+|...|.+++|+|++ .
T Consensus 981 ~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~ 1057 (1249)
T 3sfz_A 981 EDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS-R 1057 (1249)
T ss_dssp TTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSSS-E
T ss_pred CCCCEEEEEcCCCceeeecccCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCceE-EEecCCCcEEEEEEcCCC-c
Confidence 89999999999999999999999999999999 8999999999999999999999876 456899999999999975 6
Q ss_pred EEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE-EcCCcEEEEECCCceeeeeeecCCCCCC
Q 001184 932 LVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSS 1010 (1130)
Q Consensus 932 L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 1010 (1130)
+++++.|+.|++||+.+++...... .+...+.+++|+|++.++++ +.|+.+++||+.+++.+..+..| ..
T Consensus 1058 l~~~~~dg~v~vwd~~~~~~~~~~~------~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h---~~ 1128 (1249)
T 3sfz_A 1058 LLSWSFDGTVKVWNVITGRIERDFT------CHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGH---NG 1128 (1249)
T ss_dssp EEEEESSSEEEEEETTTTCCCEEEE------CCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCC---SS
T ss_pred EEEEECCCcEEEEECCCCceeEEEc------ccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccC---CC
Confidence 7899999999999999877543321 12367899999999999988 57999999999999988887766 78
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEE
Q 001184 1011 PISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVI 1090 (1130)
Q Consensus 1011 ~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW 1090 (1130)
.|++++|+|||++|++++.||.|++||+.+++.+..+......... .+|...+..++|+| ++.+|++++ |.|++|
T Consensus 1129 ~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~v~~l~fs~-dg~~l~s~~--g~v~vw 1203 (1249)
T 3sfz_A 1129 CVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGT--ATHGGWVTDVCFSP-DSKTLVSAG--GYLKWW 1203 (1249)
T ss_dssp CEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC---------CCSCCCEEEECT-TSSCEEEES--SSEEEB
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccc--cccCceEEEEEECC-CCCEEEECC--CeEEEE
Confidence 9999999999999999999999999999999987765332221111 23444566789999 477888885 899999
Q ss_pred eCCCCccCC
Q 001184 1091 EPSETERKW 1099 (1130)
Q Consensus 1091 ~~~~~~~~w 1099 (1130)
|+.+++...
T Consensus 1204 d~~~g~~~~ 1212 (1249)
T 3sfz_A 1204 NVATGDSSQ 1212 (1249)
T ss_dssp CSSSCBCCC
T ss_pred ECCCCceee
Confidence 999887643
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-56 Score=555.97 Aligned_cols=596 Identities=11% Similarity=0.107 Sum_probs=441.4
Q ss_pred eeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC
Q 001184 341 ACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1130)
Q Consensus 341 ~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 420 (1130)
...++|...|++++|+|+|+ +||+|+.||+|+|||..+++... ...|...|.+++|+|
T Consensus 11 ~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp- 68 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK- 68 (902)
T ss_dssp EEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-
T ss_pred ccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-
Confidence 34467999999999999998 69999999999999988766543 235788999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCee---------
Q 001184 421 GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKL--------- 490 (1130)
Q Consensus 421 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~--------- 490 (1130)
|++|++++.|++|++||+.+++++. .+. |.+.|++++|+|+++ ++++|+.||+|++|| .++.+.
T Consensus 69 g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~ 142 (902)
T 2oaj_A 69 GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQK 142 (902)
T ss_dssp TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHH
T ss_pred CCEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceeccccc
Confidence 8899999999999999999987654 343 778999999999999 899999999999999 554432
Q ss_pred --eEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCC------------------CccEEEEEEe
Q 001184 491 --FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP------------------GLWCTTMLYS 550 (1130)
Q Consensus 491 --~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------------------~~~v~~~~~s 550 (1130)
..+.+|.++|.+++|+|. ++..+++|+.||.| +||+++.+....+..+ ...|.+++|+
T Consensus 143 ~~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs 220 (902)
T 2oaj_A 143 SSFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH 220 (902)
T ss_dssp HHTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC
T ss_pred cccccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc
Confidence 234679999999999874 34689999999999 9999988877666554 3579999999
Q ss_pred cCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEe-----cc------------cCceeEEEEEc----CCC-CEEEEEeC
Q 001184 551 ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYI-----GF------------RKKSAGVVQFD----TTR-NRILAAGE 608 (1130)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-----~~------------~~~~v~~~~~~----~~~-~~l~~~~~ 608 (1130)
|+|++|++++. |+.|++||+++++.+.... .| +...|.+++|+ |++ ..+++|+.
T Consensus 221 pdg~~lasgs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~ 296 (902)
T 2oaj_A 221 PNSLHIITIHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS 296 (902)
T ss_dssp TTSSEEEEEET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence 99999999986 8999999999988765421 12 12368999995 443 45677766
Q ss_pred C-----CcEEEEeCC------------------CCceeEEEeccCCCCCcceEEEcC----------CCCEEEEEeCCCc
Q 001184 609 D-----NQIKFWDMD------------------NVNMLTSTEAEGGLPSLPRLRFNK----------EGNLLVVTTADQG 655 (1130)
Q Consensus 609 d-----g~i~vwd~~------------------~~~~~~~~~~~~~~~~i~~v~~s~----------~~~~l~~~~~dg~ 655 (1130)
| +.+++|++. +.+....+... +...+..+.+.+ +...+++++.|+.
T Consensus 297 ~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~ 375 (902)
T 2oaj_A 297 ISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP-TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGE 375 (902)
T ss_dssp STTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS-SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSC
T ss_pred CCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecC-CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCc
Confidence 5 378899852 22333344321 223677777755 3447889999999
Q ss_pred EEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCccccc
Q 001184 656 IKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLE 735 (1130)
Q Consensus 656 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1130)
|++|++.++.........+.
T Consensus 376 l~~~~~~~g~~~~~~~~~~~------------------------------------------------------------ 395 (902)
T 2oaj_A 376 IETMLYPSGIFTDKASLFPQ------------------------------------------------------------ 395 (902)
T ss_dssp EEEEETTTCCEECCGGGSCG------------------------------------------------------------
T ss_pred EEEEECCCCCcccccccCCC------------------------------------------------------------
Confidence 99999865521111100000
Q ss_pred ccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCccccccccccc
Q 001184 736 DISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQH 815 (1130)
Q Consensus 736 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 815 (1130)
.+ ..|...|.++++++... .+|+......
T Consensus 396 ---------~l-----------------~~~~~~v~~~~~s~~~~-----------~~w~~~~~~~-------------- 424 (902)
T 2oaj_A 396 ---------NL-----------------SWLRPLATTSMAASVPN-----------KLWLGALSAA-------------- 424 (902)
T ss_dssp ---------GG-----------------TTBTTBEEEEEEEEEEH-----------HHHHHHHHTT--------------
T ss_pred ---------cc-----------------cccCCCeeEEEEEEcCH-----------HHHHHHHhcc--------------
Confidence 00 11445677777654321 2343211000
Q ss_pred ccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeE--EEE----e-----CCCCCeEEEEEe
Q 001184 816 WQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVM--TTF----M-----SPPPASTFLAFH 883 (1130)
Q Consensus 816 w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~--~~~----~-----~~~~~i~~l~~s 883 (1130)
..+. ....+|...+.+++|+||+++|++|+ |++|++||+.++... ..+ . +|...|.+++|+
T Consensus 425 ---~~~~----~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafs 497 (902)
T 2oaj_A 425 ---QNKD----YLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFA 497 (902)
T ss_dssp ---BCCC----CSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEE
T ss_pred ---cCCC----CcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEec
Confidence 0000 01235777888899999999999999 999999999887431 111 1 788899999999
Q ss_pred CCCCcEEEEEeCCCcEEEEEeecC---------------------------------------------eEEEEEecCCC
Q 001184 884 PQDNNIIAIGMEDSTIQIYNVRVD---------------------------------------------EVKTKLKGHQK 918 (1130)
Q Consensus 884 p~~~~~lasg~~dg~v~iwd~~~~---------------------------------------------~~~~~l~~h~~ 918 (1130)
| ++++||+|+.||+|+||++.++ +++..+.+|.+
T Consensus 498 p-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~ 576 (902)
T 2oaj_A 498 A-ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKG 576 (902)
T ss_dssp T-TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSC
T ss_pred C-CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCC
Confidence 9 8999999999999999999876 34778899999
Q ss_pred CeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEc-----CCC---cEEEE-EcCCcEE
Q 001184 919 HITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFH-----SDQ---VRLLV-NHETQLA 989 (1130)
Q Consensus 919 ~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~d~---~~l~~-~~d~~i~ 989 (1130)
.|++|+||||| +||+|+.|++|++||+.+...............+...|.+++|+ ||| .+|++ +.|++|+
T Consensus 577 ~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~ 655 (902)
T 2oaj_A 577 KTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVI 655 (902)
T ss_dssp SEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEE
T ss_pred cEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEE
Confidence 99999999999 99999999999999998755432211111211345789999999 886 78887 6799999
Q ss_pred EEEC---CCceeeeeeecCC--CCCCCeEEEE-EC----------------------CCCCEEEEEeCCCcEEEEeCCCc
Q 001184 990 IYDG---SKMECIRQWVPQD--VLSSPISSAA-YS----------------------CNSQLIYATFTDGSIGVFDADSL 1041 (1130)
Q Consensus 990 v~d~---~~~~~~~~~~~~~--~~~~~v~~v~-~s----------------------~dg~~l~t~~~Dg~i~vwd~~~~ 1041 (1130)
+||+ .+|+....+.++. .|.++|.+++ |+ ++|.+|+++ +..|+||++.++
T Consensus 656 ~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~ 733 (902)
T 2oaj_A 656 TYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKS 733 (902)
T ss_dssp EEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCC
T ss_pred EEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccc
Confidence 9999 7888888887763 2357787777 65 455555544 778999999998
Q ss_pred ccccccCCCcccccCCCCCceeeeEEE---E------EcCCCCCEEEEEeCCCcEEEEeCCCCccCCcccccC
Q 001184 1042 RLRCRIAPSAYMSQASPNSQTVFPLVV---T------SHPQEPNQLAVGLTDGSVKVIEPSETERKWGVAVPV 1105 (1130)
Q Consensus 1042 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------~~~~~~~~l~s~~~Dg~v~vW~~~~~~~~w~~~~p~ 1105 (1130)
+....... +...+..+ . |++ ++..|++++.||+|++|++.+.++.-....|.
T Consensus 734 k~~~k~~~-----------~~~~~~~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~ 794 (902)
T 2oaj_A 734 KSTHKGFK-----------YPLAATGLSYISTVEKNNDRK-NLTVIITLEINGHLRVFTIPDFKEQMSEHIPF 794 (902)
T ss_dssp CEEEEECS-----------SCEEEEEEEEEEEECSSSCEE-EEEEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred cceeeEcc-----------cceeeeEEEEEEecccccccc-CceEEEEEeCCCcEEEEECcchHHHhhccCCc
Confidence 87765531 22222233 3 445 47899999999999999999988764444443
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-54 Score=531.89 Aligned_cols=560 Identities=10% Similarity=0.113 Sum_probs=457.1
Q ss_pred cCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCC----ccceeeeeeecCCCC-eeEEEEec--CCCceEEEEEcCCC
Q 001184 406 KDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGS----NDLCQSLEIDAHVGG-VNDLAFSY--PNKQLCIVTCGDDK 478 (1130)
Q Consensus 406 ~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~----~~~~~~~~~~~h~~~-V~~i~~s~--d~~~l~l~s~s~d~ 478 (1130)
..|.+.|.+++|+|||++||+++ ++.|++||+.++ +.. ..+.+|... |++++|+| +++ +|++++.|+
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~---~~~~~h~~~~v~~~~~sp~~~~~--~l~s~~~dg 88 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPV---VQFTGHGSSVVTTVKFSPIKGSQ--YLCSGDESG 88 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSE---EEECTTTTSCEEEEEECSSTTCC--EEEEEETTS
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccc---eEEecCCCceEEEEEECcCCCCC--EEEEecCCC
Confidence 47889999999999999999998 789999999987 443 368899999 99999999 999 899999999
Q ss_pred cEEEEe-cCC--------CeeeEecCCCcCEEEEeecccCCccEEEEEecC----CcEEEEEccCCcceeeecCCCccEE
Q 001184 479 LIRVWD-LSG--------RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD----GKIKAWLYDNVGSRVDYDAPGLWCT 545 (1130)
Q Consensus 479 ~v~iwd-~~~--------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~v~ 545 (1130)
.|++|| .++ ..+..+.+|...|.+++|++ ++.+|++++.+ +.|++|| ..+....+..|...|.
T Consensus 89 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~ 164 (615)
T 1pgu_A 89 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF--EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRIN 164 (615)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT--TSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEE
T ss_pred EEEEEeCCCCcccccccccccchhhcccccEEEEEEeC--CCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEE
Confidence 999999 444 67788889999999999965 55899999887 6888887 5667778888999999
Q ss_pred EEEEecCCC-eEEEeeecCCCCcEEEEeeCCCCceeEEEecccCc--eeEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCc
Q 001184 546 TMLYSADGS-RLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK--SAGVVQFDTT-RNRILAAGEDNQIKFWDMDNVN 621 (1130)
Q Consensus 546 ~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~--~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~ 621 (1130)
+++|+|+++ .+++++. ++.|++||..+++.+..+.+|... .+.+++|+|+ ++++++++.||.|++||+.+++
T Consensus 165 ~~~~~~~~~~~l~~~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 240 (615)
T 1pgu_A 165 ACHLKQSRPMRSMTVGD----DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 240 (615)
T ss_dssp EEEECSSSSCEEEEEET----TTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC
T ss_pred EEEECCCCCcEEEEEeC----CCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 999999998 6888775 899999999999999999876541 6999999999 9999999999999999999999
Q ss_pred eeEEEecc--CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccc
Q 001184 622 MLTSTEAE--GGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPV 699 (1130)
Q Consensus 622 ~~~~~~~~--~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 699 (1130)
.+..+... .+...|.+++|+ ++.+|++++.|+.|++||+.++ +....+..+...... ..
T Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~---------~~-------- 301 (615)
T 1pgu_A 241 FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS-KCVQKWTLDKQQLGN---------QQ-------- 301 (615)
T ss_dssp EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT-EEEEEEECCTTCGGG---------CE--------
T ss_pred EeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC-cEEEEEcCCCCcccC---------ce--------
Confidence 98887321 234489999999 9999999999999999999876 333333222100000 00
Q ss_pred cccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccC
Q 001184 700 LSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSG 779 (1130)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g 779 (1130)
.....+++..+++++.++.+++|++.... ....+ ..|...|.+++| |+
T Consensus 302 ----------------------~~~~~~~~~~l~~~~~~g~i~~~d~~~~~-----~~~~~---~~~~~~v~~~~~-~~- 349 (615)
T 1pgu_A 302 ----------------------VGVVATGNGRIISLSLDGTLNFYELGHDE-----VLKTI---SGHNKGITALTV-NP- 349 (615)
T ss_dssp ----------------------EEEEEEETTEEEEEETTSCEEEEETTEEE-----EEEEE---CCCSSCEEEEET-TT-
T ss_pred ----------------------eEEEeCCCCeEEEEECCCCEEEEECCCCc-----EEEEE---eCCCCCEEEEEe-cC-
Confidence 00011246778899999999999987622 11122 348899999999 88
Q ss_pred CeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEE
Q 001184 780 IGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSL 858 (1130)
Q Consensus 780 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~i 858 (1130)
+++++.||.+++|++. .+. .+|...|.++++ +++..+++++ |+.|++
T Consensus 350 --l~~~~~dg~i~~w~~~-------------------------~~~----~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~ 397 (615)
T 1pgu_A 350 --LISGSYDGRIMEWSSS-------------------------SMH----QDHSNLIVSLDN-SKAQEYSSISWDDTLKV 397 (615)
T ss_dssp --TEEEETTSCEEETTTT-------------------------EEE----CCCCSCEEEEEC-CSTTCCEEEETTTEEEE
T ss_pred --cEEECCCCeEEEEEch-------------------------hhc----CcccCceEEEEE-CCCcEEEEEeCCCCEEE
Confidence 9999999999999753 000 258899999999 5566777776 999999
Q ss_pred EECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeC-
Q 001184 859 FNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGS- 937 (1130)
Q Consensus 859 wd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~- 937 (1130)
||+.+++... .+.+++++| ++.+++++ .++.+++|++.+++.+..+. |...+++++|+ +++|++++.
T Consensus 398 ~~~~~~~~~~-------~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~ 465 (615)
T 1pgu_A 398 NGITKHEFGS-------QPKVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEE 465 (615)
T ss_dssp TTEEEEECSS-------CEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--SSEEEEEETT
T ss_pred EEcccCcccC-------CceEEEEcC-CCCEEEEe-CCCceEEEeccCCceeeecc-cCCCceEEEEc--CCEEEEeecC
Confidence 9987765432 688999999 88888777 88999999999999988887 88999999999 889999999
Q ss_pred CCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE-EcCCcEEEEECCCceeeeeeecCCCCCCCeEEEE
Q 001184 938 DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAA 1016 (1130)
Q Consensus 938 Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~ 1016 (1130)
|+.|++||+.+++... .. ...+...+.+++|+|++++|++ +.|+.|++||+.+++.+..+... |...|++++
T Consensus 466 d~~i~~~~~~~~~~~~----~~-~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--h~~~v~~~~ 538 (615)
T 1pgu_A 466 GNTIQVFKLSDLEVSF----DL-KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF--RTSKINAIS 538 (615)
T ss_dssp TSCEEEEETTEEEEEE----EC-SSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC--CSSCEEEEE
T ss_pred CCeEEEEECCCccccc----cc-cCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecC--CCCceeEEE
Confidence 9999999999854321 11 2234478999999999999998 57999999999999998887651 378999999
Q ss_pred ECC----------CCCEEEEEeCCCcEEEEeCCCc-ccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCC
Q 001184 1017 YSC----------NSQLIYATFTDGSIGVFDADSL-RLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDG 1085 (1130)
Q Consensus 1017 ~s~----------dg~~l~t~~~Dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg 1085 (1130)
|+| ++++|++++.||.|++||+.++ +.+..+. +|...+.+++|+|+ +. |++++.||
T Consensus 539 ~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----------~h~~~v~~l~~s~~-~~-l~s~~~d~ 605 (615)
T 1pgu_A 539 WKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN-----------AHKDGVNNLLWETP-ST-LVSSGADA 605 (615)
T ss_dssp ECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT-----------SSTTCEEEEEEEET-TE-EEEEETTS
T ss_pred EcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh-----------cCccceEEEEEcCC-CC-eEEecCCc
Confidence 999 9999999999999999999988 5555543 23345667889995 66 99999999
Q ss_pred cEEEEeCCC
Q 001184 1086 SVKVIEPSE 1094 (1130)
Q Consensus 1086 ~v~vW~~~~ 1094 (1130)
.|++|++..
T Consensus 606 ~v~iw~~~~ 614 (615)
T 1pgu_A 606 CIKRWNVVL 614 (615)
T ss_dssp CEEEEEEC-
T ss_pred eEEEEeeec
Confidence 999999875
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-52 Score=521.74 Aligned_cols=589 Identities=10% Similarity=0.049 Sum_probs=423.1
Q ss_pred CcccccccCCCCCcccccCCc--------ccceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeeccc
Q 001184 316 SVDEATYPVPSQQATWSLDDL--------PRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKP 387 (1130)
Q Consensus 316 ~~~~~~~s~~~~~~~~~~~~~--------~~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~ 387 (1130)
.+.+++|+|++..++....+. ..++...+.|...|++++|+| |+ +|++++.|++|+|||+.+++.+.
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~-~L~S~s~D~~v~lWd~~~~~~~~--- 93 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GI-YLVVINAKDTVYVLSLYSQKVLT--- 93 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TT-EEEEEETTCEEEEEETTTCSEEE---
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CC-EEEEEECcCeEEEEECCCCcEEE---
Confidence 567788888886444332221 334455567889999999999 87 69999999999999999988764
Q ss_pred ceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceee--------eeeecCCCCeeE
Q 001184 388 FKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQS--------LEIDAHVGGVND 459 (1130)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~--------~~~~~h~~~V~~ 459 (1130)
.+. |.+.|++++|+|++++|++|+.||+|++||+.+++..... ..+.+|.+.|.+
T Consensus 94 ----------------~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~s 156 (902)
T 2oaj_A 94 ----------------TVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVS 156 (902)
T ss_dssp ----------------EEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCE
T ss_pred ----------------EEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEE
Confidence 232 5678999999999999999999999999999987642110 235789999999
Q ss_pred EEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCC------------------CcCEEEEeecccCCccEEEEEecC
Q 001184 460 LAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGH------------------EAPVYSVCPHQKENIHFIFSTAVD 520 (1130)
Q Consensus 460 i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h------------------~~~v~~~~~~~~~~~~~l~s~s~d 520 (1130)
++|+|++.. .+++|+.|+.| +|| .+++++..+.+| ...|.+++|+| ++.+|++++.|
T Consensus 157 l~~sp~~~~-~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp--dg~~lasgs~D 232 (902)
T 2oaj_A 157 IQWNPRDIG-TVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP--NSLHIITIHED 232 (902)
T ss_dssp EEEETTEEE-EEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT--TSSEEEEEETT
T ss_pred EEEccCCCC-EEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC--CCCEEEEEECC
Confidence 999997543 78999999999 999 778888888765 57899999976 46899999999
Q ss_pred CcEEEEEccCCcceee--e---cC-------------CCccEEEEEEec----CC-CeEEEeeecCC-CCcEEEEeeCC-
Q 001184 521 GKIKAWLYDNVGSRVD--Y---DA-------------PGLWCTTMLYSA----DG-SRLFSCGTSKE-GDSHLVEWNES- 575 (1130)
Q Consensus 521 g~i~vwd~~~~~~~~~--~---~~-------------~~~~v~~~~~s~----~~-~~l~~~~~~~~-~~~~i~~wd~~- 575 (1130)
|+|++||+++++.... + .. +...|.+++|++ ++ ..+++++.+.+ ....+.+|+..
T Consensus 233 g~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~ 312 (902)
T 2oaj_A 233 NSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGY 312 (902)
T ss_dssp CCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEE
T ss_pred CeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCC
Confidence 9999999988766542 2 11 234799999964 43 45566544211 12478888842
Q ss_pred -----------------CCceeEEEecccCceeEEEEEcC----------CCCEEEEEeCCCcEEEEeCCCCceeEEE--
Q 001184 576 -----------------EGALKRTYIGFRKKSAGVVQFDT----------TRNRILAAGEDNQIKFWDMDNVNMLTST-- 626 (1130)
Q Consensus 576 -----------------~~~~~~~~~~~~~~~v~~~~~~~----------~~~~l~~~~~dg~i~vwd~~~~~~~~~~-- 626 (1130)
+++..+.+.......+..+.+.+ +...+++++.||.|++||+.++......
T Consensus 313 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~ 392 (902)
T 2oaj_A 313 TPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASL 392 (902)
T ss_dssp CCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGG
T ss_pred CCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCccccccc
Confidence 22334444322233566676654 3347899999999999999877543220
Q ss_pred ---eccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccc
Q 001184 627 ---EAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKA 703 (1130)
Q Consensus 627 ---~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 703 (1130)
....+...|++++|++.. .++|+.... ..
T Consensus 393 ~~~~l~~~~~~v~~~~~s~~~-----------~~~w~~~~~--------~~----------------------------- 424 (902)
T 2oaj_A 393 FPQNLSWLRPLATTSMAASVP-----------NKLWLGALS--------AA----------------------------- 424 (902)
T ss_dssp SCGGGTTBTTBEEEEEEEEEE-----------HHHHHHHHH--------TT-----------------------------
T ss_pred CCCcccccCCCeeEEEEEEcC-----------HHHHHHHHh--------cc-----------------------------
Confidence 111122355655554311 122321100 00
Q ss_pred cccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEE
Q 001184 704 ERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGIL 783 (1130)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~ 783 (1130)
+ ...|.+ .+|...+..++|+|+++.++
T Consensus 425 -----------------------------------~-~~~~~l-----------------~G~~~~v~sv~~spdg~~la 451 (902)
T 2oaj_A 425 -----------------------------------Q-NKDYLL-----------------KGGVRTKRQKLPAEYGTAFI 451 (902)
T ss_dssp -----------------------------------B-CCCCSC-----------------CCSBCCCCCCCCCSEEEEEE
T ss_pred -----------------------------------c-CCCCcc-----------------cCCcCCCCcccccccCcEEE
Confidence 0 000001 23566677889999999999
Q ss_pred EeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECC
Q 001184 784 ALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMM 862 (1130)
Q Consensus 784 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~ 862 (1130)
+++.|++|++||+..+..... ..+... +...+..+|...|.+++|+|||++||+|+ ||+|+|||+.
T Consensus 452 Sgs~DgtVrlWd~~~g~~~~~---------~~~~~~----l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~ 518 (902)
T 2oaj_A 452 TGHSNGSVRIYDASHGDIQDN---------ASFEVN----LSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYE 518 (902)
T ss_dssp EEETTSEEEEEESSCCTTTTT---------BCEEEE----HHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred EecCCCcEEEEECCCccccCC---------ceEEee----chhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEec
Confidence 999999999999876532100 000000 00001126888999999999999999999 8999999997
Q ss_pred Cc---------------------------------------------eeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCC
Q 001184 863 NF---------------------------------------------KVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS 897 (1130)
Q Consensus 863 ~~---------------------------------------------~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg 897 (1130)
++ +++..+.+|.+.|++++|+| +| +||+|+.|+
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~ 596 (902)
T 2oaj_A 519 VNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAG 596 (902)
T ss_dssp ECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTS
T ss_pred CccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCC
Confidence 66 34677889999999999999 88 999999999
Q ss_pred cEEEEEeecCeEEE--E---Ee-cCCCCeeEEEEc-----cCC---CeEEEEeCCCcEEEEEC---CCCcccceeeEecc
Q 001184 898 TIQIYNVRVDEVKT--K---LK-GHQKHITGLAFS-----TNL---NILVSSGSDAQLIFWNT---DTWEKRKSIAIQLP 960 (1130)
Q Consensus 898 ~v~iwd~~~~~~~~--~---l~-~h~~~V~~l~~s-----~dg---~~L~s~s~Dg~i~vwd~---~~~~~~~~~~~~~~ 960 (1130)
+|+|||+++...+. . +. +|.+.|++|+|+ ||| ++|++++.|++|++||+ .+++......-...
T Consensus 597 tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~ 676 (902)
T 2oaj_A 597 SLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITN 676 (902)
T ss_dssp EEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEE
T ss_pred cEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCcee
Confidence 99999998887764 2 33 899999999999 886 89999999999999999 66654333222211
Q ss_pred CCCCCCCeEEEE-Ec----------------------CCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEE--
Q 001184 961 AGKLPVGETRVQ-FH----------------------SDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSA-- 1015 (1130)
Q Consensus 961 ~~~~~~~v~~~~-~s----------------------~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v-- 1015 (1130)
..+...|..++ |+ +++.+|+++ +..++||++.++++......+ ...+.++
T Consensus 677 -~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~-~~~ir~~~~~~~k~~~k~~~~---~~~~~~v~~ 751 (902)
T 2oaj_A 677 -VTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG-FDDIRLITLGKSKSTHKGFKY---PLAATGLSY 751 (902)
T ss_dssp -CCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC-SSEEEEECTTCCCEEEEECSS---CEEEEEEEE
T ss_pred -cCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe-ccceEEEeCccccceeeEccc---ceeeeEEEE
Confidence 11224555555 55 455555554 889999999999998777554 3455665
Q ss_pred -E------ECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCc
Q 001184 1016 -A------YSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSA 1051 (1130)
Q Consensus 1016 -~------~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~ 1051 (1130)
. |+++|..|++++.||.|++|++.+++.+..+....
T Consensus 752 ~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~ 794 (902)
T 2oaj_A 752 ISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPF 794 (902)
T ss_dssp EEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred EEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccCCc
Confidence 5 78999999999999999999999999988776433
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-46 Score=472.56 Aligned_cols=551 Identities=13% Similarity=0.158 Sum_probs=415.9
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
+|.+.|++++|||+|+ +||+|+.||.|+|||+.+++.+. .+.+|.+.|.+++|+|||++|
T Consensus 11 ~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~-------------------~~~~~~~~v~~~~~s~~~~~l 70 (814)
T 3mkq_A 11 NRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVR-------------------SIQVTETPVRAGKFIARKNWI 70 (814)
T ss_dssp EECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEE-------------------EEECCSSCEEEEEEEGGGTEE
T ss_pred cCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEE-------------------EEecCCCcEEEEEEeCCCCEE
Confidence 5999999999999998 58999999999999999988765 467899999999999999999
Q ss_pred EEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCC-CeeeEecCCCcCEEE
Q 001184 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG-RKLFQFEGHEAPVYS 502 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~-~~~~~~~~h~~~v~~ 502 (1130)
|+|+.||.|++||+.+++.+. .+.+|.+.|++++|+|+++ +|++++.|+.|++|| .++ .....+.+|...|.+
T Consensus 71 ~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~ 145 (814)
T 3mkq_A 71 IVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMC 145 (814)
T ss_dssp EEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEE
T ss_pred EEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEE
Confidence 999999999999999987554 6788999999999999999 799999999999999 555 667888899999999
Q ss_pred EeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCC-ccEEEEEEec--CCCeEEEeeecCCCCcEEEEeeCCCCce
Q 001184 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG-LWCTTMLYSA--DGSRLFSCGTSKEGDSHLVEWNESEGAL 579 (1130)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1130)
++|+|. ++..+++++.||.|++||+........+..+. ..+.+++|+| ++.++++++. ++.|++||..+++.
T Consensus 146 ~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~ 220 (814)
T 3mkq_A 146 VAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWDYQTKSC 220 (814)
T ss_dssp EEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEEETTTTEE
T ss_pred EEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEEECCCCcE
Confidence 999762 45799999999999999998887777666554 7899999999 9999999975 89999999999999
Q ss_pred eEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCC--EEEEEeCCCcEE
Q 001184 580 KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGN--LLVVTTADQGIK 657 (1130)
Q Consensus 580 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~--~l~~~~~dg~i~ 657 (1130)
+..+.+|.. .+.+++|+|+++++++++.||.|++||+.+++.+..+..+.. .+.+++|+|++. +++++ .++.+.
T Consensus 221 ~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~-~~~~~~ 296 (814)
T 3mkq_A 221 VATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASG-FDNGFT 296 (814)
T ss_dssp EEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSS--SEEEEEECTTCGGGEEEEE-ETTEEE
T ss_pred EEEEcCCCC-CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCC--cEEEEEEccCCCceEEEEE-eCCCEE
Confidence 999988765 899999999999999999999999999999999988876654 799999999987 45555 566788
Q ss_pred EEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCccccccc
Q 001184 658 ILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDI 737 (1130)
Q Consensus 658 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1130)
+|++..+.... .++|+ +..+++++.
T Consensus 297 ~~~~~~~~~~~--------------------------~~~~~-----------------------------g~~~~~~~~ 321 (814)
T 3mkq_A 297 VLSLGNDEPTL--------------------------SLDPV-----------------------------GKLVWSGGK 321 (814)
T ss_dssp EEECSCCSCCE--------------------------EECSS-----------------------------SEEEEECCT
T ss_pred EEEcCCCCcee--------------------------EECCC-----------------------------CCEEEECcc
Confidence 89876542110 22222 111111111
Q ss_pred CCCc---------cceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccc
Q 001184 738 SDKT---------KPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKAT 808 (1130)
Q Consensus 738 d~~i---------~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 808 (1130)
+... ..|.+...... ....... ..+...+.+++|+|+|+.+++++ ++.+.+|++...
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~--------- 387 (814)
T 3mkq_A 322 NAAASDIFTAVIRGNEEVEQDEPL-SLQTKEL---GSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAW--------- 387 (814)
T ss_dssp TSCTTCEEEEECCSCCCCCSSSCB-CCCCEEE---CCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTT---------
T ss_pred cccceeeeeeecccccccccCccc-eeeeecC---CCCccCCceeEECCCCCEEEEec-CCEEEEEECccc---------
Confidence 1110 01111111100 0001111 22566789999999999998887 899999985320
Q ss_pred cccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCC
Q 001184 809 AAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDN 887 (1130)
Q Consensus 809 ~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~ 887 (1130)
. ..+.+.+.+++|+|||+++++++ +|.|++|+. +.+|...+.+++|+| ++
T Consensus 388 --------~------------~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~--------~~~~~~~v~~~~~s~-dg 438 (814)
T 3mkq_A 388 --------R------------NKAFGKCQDFVWGPDSNSYALIDETGQIKYYKN--------FKEVTSWSVPMHSAI-DR 438 (814)
T ss_dssp --------E------------EEEEEECSEEEECTTSSCEEEECTTCCEEEEET--------TEECTTCCCCCSSCC-CE
T ss_pred --------c------------ccCCCceEEEEEeCCCCeEEEEeCCCcEEEEEC--------CCCccceEEcCCcCc-cc
Confidence 0 02345688999999999999998 899999963 345777889999999 66
Q ss_pred ---cEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEE------eCCCcEEEEECCC----------
Q 001184 888 ---NIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSS------GSDAQLIFWNTDT---------- 948 (1130)
Q Consensus 888 ---~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~------s~Dg~i~vwd~~~---------- 948 (1130)
.+|++++.|+.|++||+.+++.+..+..|.. .++|+|||++|+++ +.++.+.+|--..
T Consensus 439 ~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (814)
T 3mkq_A 439 LFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGN 515 (814)
T ss_dssp EECSSSEEEEETTEEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTC
T ss_pred eecceEEEEecCCEEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhccC
Confidence 5788889999999999999999999988865 89999999999999 6666555554210
Q ss_pred -----CcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEc-CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCC
Q 001184 949 -----WEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQ 1022 (1130)
Q Consensus 949 -----~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~ 1022 (1130)
+......... .. ...+.+..|. +..++... .+.+..+-. ++. ..+... ..++..+.|.+++.
T Consensus 516 ~~~~~~~~~~~~~~~--~~--~~~i~s~~w~--~~~~i~~t~~~~~~~~~~--~~~-~~~~~~---~~~~~~~~~~~~~~ 583 (814)
T 3mkq_A 516 IDDSEGVDEAFDVLY--EL--SESITSGKWV--GDVFIFTTATNRLNYFVG--GKT-YNLAHY---TKEMYLLGYLARDN 583 (814)
T ss_dssp CBTTTBCTTTEEEEE--EE--CSCCSEEEEE--TTEEEEECTTSEEEEEET--TEE-EEEEEC---SSCCEEEEEEGGGT
T ss_pred Cccccchhhheeeee--Ee--ccEEEeeEEe--CCEEEEEcCCCeEEEEeC--Cee-EEEEEC---CccEEEEEEEecCC
Confidence 0000000000 00 1234455564 33333322 344444322 221 122222 45677788889999
Q ss_pred EEEEEeCCCcEEEEeCCCcc
Q 001184 1023 LIYATFTDGSIGVFDADSLR 1042 (1130)
Q Consensus 1023 ~l~t~~~Dg~i~vwd~~~~~ 1042 (1130)
.++....++.+++|++....
T Consensus 584 ~l~~~d~~~~~~~~~l~~~~ 603 (814)
T 3mkq_A 584 KVYLADREVHVYGYEISLEV 603 (814)
T ss_dssp EEEEECTTCCEEEEECCHHH
T ss_pred EEEEEcCCCCEEEEEECcHH
Confidence 99999999999999987543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-44 Score=453.43 Aligned_cols=476 Identities=15% Similarity=0.219 Sum_probs=366.7
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
.+.+|.+.|.+++|+|||++||+|+.||.|++||+.+++.+. .+.+|.+.|.+++|+|+++ +|++++.|+.|++|
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVF 82 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEE
T ss_pred eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEE
Confidence 578999999999999999999999999999999999987554 6789999999999999999 89999999999999
Q ss_pred e-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCC-cceeeecCCCccEEEEEEec-CCCeEEEee
Q 001184 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV-GSRVDYDAPGLWCTTMLYSA-DGSRLFSCG 560 (1130)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~ 560 (1130)
| .+++.+..+.+|...|.+++|++ ++.+|++++.||.|++||+++. .....+..|...|.+++|+| +++.+++++
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 160 (814)
T 3mkq_A 83 NYNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (814)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred ECCCCcEEEEEecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe
Confidence 9 88999999999999999999975 4579999999999999999887 55567788889999999999 888999988
Q ss_pred ecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceE
Q 001184 561 TSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT--TRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1130)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v 638 (1130)
. ++.|++||+.++.....+..++...+.+++|+| +++++++++.||.|++||+.+++.+..+..+.. .|.++
T Consensus 161 ~----dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--~v~~~ 234 (814)
T 3mkq_A 161 L----DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSFA 234 (814)
T ss_dssp T----TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSS--CEEEE
T ss_pred C----CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCC--CEEEE
Confidence 6 899999999999888888887766899999999 999999999999999999999999888876654 79999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccc
Q 001184 639 RFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTIL 718 (1130)
Q Consensus 639 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~ 718 (1130)
+|+|+++++++++.||.|++||+.++ .....+..+...+ ...+++|+
T Consensus 235 ~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~~~~~v-------------~~~~~~~~------------------- 281 (814)
T 3mkq_A 235 VFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLNVGLERS-------------WCIATHPT------------------- 281 (814)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTC-SEEEEECCSSSSE-------------EEEEECTT-------------------
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEeecCCCcE-------------EEEEEccC-------------------
Confidence 99999999999999999999998776 2222222211111 11122222
Q ss_pred cCCCccccCCCCc-ccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEE-eeec
Q 001184 719 NGADSAARGIEKP-RNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQK-LWKW 796 (1130)
Q Consensus 719 ~~~~~~~~~~~~~-~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~-iw~~ 796 (1130)
+.. +++.+.++.+.+|++.. ....+.++|+|..+++++.+.... ++.
T Consensus 282 ----------~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~- 330 (814)
T 3mkq_A 282 ----------GRKNYIASGFDNGFTVLSLGN--------------------DEPTLSLDPVGKLVWSGGKNAAASDIFT- 330 (814)
T ss_dssp ----------CGGGEEEEEETTEEEEEECSC--------------------CSCCEEECSSSEEEEECCTTSCTTCEEE-
T ss_pred ----------CCceEEEEEeCCCEEEEEcCC--------------------CCceeEECCCCCEEEECcccccceeeee-
Confidence 221 13333344444454322 112345555555555444332100 000
Q ss_pred CCCCCCCCcccccccccccccCCCCcceecc--CCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEeCCC
Q 001184 797 NRTEQNPSGKATAAVAPQHWQPSNGLLMTND--VPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPP 874 (1130)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~--~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~ 874 (1130)
......|+...+...... ....+...+.+++|+|+|++++++++|.+.+|++....... .
T Consensus 331 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~-----~ 392 (814)
T 3mkq_A 331 -------------AVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKA-----F 392 (814)
T ss_dssp -------------EECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEE-----E
T ss_pred -------------eecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECccccccC-----C
Confidence 000012333333222111 11245667899999999999999999999999987654433 3
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCC---CeEEEEeCCCcEEEEECCCCcc
Q 001184 875 PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNL---NILVSSGSDAQLIFWNTDTWEK 951 (1130)
Q Consensus 875 ~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg---~~L~s~s~Dg~i~vwd~~~~~~ 951 (1130)
+.+.+++|+| +++++|+++.+|.|++|+ .+.+|...|.+++|+||| .+|++++.|+.|++||+.+++.
T Consensus 393 ~~i~~~~~sp-dg~~la~~~~~g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~ 463 (814)
T 3mkq_A 393 GKCQDFVWGP-DSNSYALIDETGQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTL 463 (814)
T ss_dssp EECSEEEECT-TSSCEEEECTTCCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCE
T ss_pred CceEEEEEeC-CCCeEEEEeCCCcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcE
Confidence 4588999999 899999999999999995 346688899999999998 6899999999999999998764
Q ss_pred cceeeEeccCCCCCCCeEEEEEcCCCcEEEEE------cCCcEEEEE
Q 001184 952 RKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN------HETQLAIYD 992 (1130)
Q Consensus 952 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~------~d~~i~v~d 992 (1130)
.... .. ....+.|+|||++|++. .++.+.++.
T Consensus 464 ~~~~-----~~----~~~~v~~s~dg~~la~~~~~~~~~~~~~~~~~ 501 (814)
T 3mkq_A 464 VRRI-----DV----NAKDVIWSDNGELVMIVNTNSNGDEASGYTLL 501 (814)
T ss_dssp EEEE-----SS----CEEEEEECTTSSEEEEEECCCSSCSCSEEEEE
T ss_pred EEEE-----ec----CCCEEEEcCCCCEEEEEEcCcccCCceEEEEE
Confidence 3222 11 12389999999999997 666666663
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-44 Score=413.17 Aligned_cols=283 Identities=22% Similarity=0.388 Sum_probs=262.4
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
+|...|++++|+|+++ +|++|+.||+|+|||+.+++... .+.+|...|.+++|+|+|++|
T Consensus 106 gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~-------------------~l~~h~~~V~~v~~~~~~~~l 165 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFER-------------------TLKGHTDSVQDISFDHSGKLL 165 (410)
T ss_dssp CCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCE-------------------EECCCSSCEEEEEECTTSSEE
T ss_pred ccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEE-------------------EEeccCCcEEEEEEcCCCCEE
Confidence 5999999999999998 69999999999999999988765 578999999999999999999
Q ss_pred EEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEE
Q 001184 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1130)
|+|+.|++|++||+.+++++. .+.+|...|.+++|+|+++ ++++|+.|++|++|| .++.++..+.+|...|.++
T Consensus 166 ~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~ 240 (410)
T 1vyh_C 166 ASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240 (410)
T ss_dssp EEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred EEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEE
Confidence 999999999999999877654 6789999999999999999 899999999999999 8899999999999999999
Q ss_pred eecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecC--------------------CCeEEEeeecC
Q 001184 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSAD--------------------GSRLFSCGTSK 563 (1130)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~--------------------~~~l~~~~~~~ 563 (1130)
++++ ++.+|++++.|++|++||+.+......+..|...|.+++|+|+ |.+|++++.
T Consensus 241 ~~~~--~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~-- 316 (410)
T 1vyh_C 241 RPNQ--DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR-- 316 (410)
T ss_dssp EECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET--
T ss_pred EECC--CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC--
Confidence 8854 5689999999999999999999988899999999999999996 668999886
Q ss_pred CCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCC
Q 001184 564 EGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1130)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~ 643 (1130)
++.|++||+.+++++..+.+|.. .|.+++|+|++++|++|+.||.|++||+.+++.+..+..|.. .|.+++|+|+
T Consensus 317 --D~~i~iwd~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~ 391 (410)
T 1vyh_C 317 --DKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDFHKT 391 (410)
T ss_dssp --TSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEEEEECSS
T ss_pred --CCeEEEEECCCCceEEEEECCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC--cEEEEEEcCC
Confidence 89999999999999999998766 899999999999999999999999999999999998887655 7999999999
Q ss_pred CCEEEEEeCCCcEEEEEc
Q 001184 644 GNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~ 661 (1130)
+.+|++|+.||+|++|++
T Consensus 392 ~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 392 APYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SSCEEEEETTSEEEEEC-
T ss_pred CCEEEEEeCCCcEEEEeC
Confidence 999999999999999985
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-39 Score=353.66 Aligned_cols=285 Identities=16% Similarity=0.217 Sum_probs=258.5
Q ss_pred cCCCCEEEEEEecC----CCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC
Q 001184 345 HQGSSVVSMDFHPF----HHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1130)
Q Consensus 345 ~h~~~V~~v~fspd----g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 420 (1130)
+|.+.|++++|+|+ ++ +|++|+.|++|+|||+.+++.... ..+.+|...|.+++|+|+
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~-----------------~~l~gh~~~v~~~~~~~~ 91 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQ-----------------WSLEGHQLGVVSVDISHT 91 (321)
T ss_dssp SSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEE-----------------EEECCCSSCEEEEEECSS
T ss_pred cCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeee-----------------eeeccCCCCEEEEEECCC
Confidence 59999999999986 44 699999999999999987654321 147799999999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcC
Q 001184 421 GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAP 499 (1130)
Q Consensus 421 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~ 499 (1130)
+.++++++.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++++.|+.|++|| .+++....+..|...
T Consensus 92 ~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~ 166 (321)
T 3ow8_A 92 LPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEYSLDTRGKF 166 (321)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEEEEECSSSC
T ss_pred CCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeEEecCCCce
Confidence 9999999999999999999987654 5778899999999999999 899999999999999 888999999999999
Q ss_pred EEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCce
Q 001184 500 VYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL 579 (1130)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1130)
|.+++|+| ++++|++++.||.|++||+++++....+..|..+|.+++|+|++++|++++. ++.|++||+++++.
T Consensus 167 v~~~~~sp--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~iwd~~~~~~ 240 (321)
T 3ow8_A 167 ILSIAYSP--DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKIYDVQHANL 240 (321)
T ss_dssp EEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEEEETTTCCE
T ss_pred EEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEEEECCCcce
Confidence 99999965 5689999999999999999999888889999999999999999999999986 89999999999999
Q ss_pred eEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEE
Q 001184 580 KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659 (1130)
Q Consensus 580 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw 659 (1130)
...+.+|.. .+.+++|+|++++|++++.|+.|++||+.+++++..+..+.. .|.+++|+|++++|++++.|+.|++|
T Consensus 241 ~~~~~~h~~-~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~--~v~~v~~s~~g~~l~s~~~d~~i~vw 317 (321)
T 3ow8_A 241 AGTLSGHAS-WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD--QVWGVKYNGNGSKIVSVGDDQEIHIY 317 (321)
T ss_dssp EEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred eEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCC--cEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 999998766 799999999999999999999999999999999998876544 89999999999999999999999999
Q ss_pred Ec
Q 001184 660 AN 661 (1130)
Q Consensus 660 ~~ 661 (1130)
|.
T Consensus 318 d~ 319 (321)
T 3ow8_A 318 DC 319 (321)
T ss_dssp EC
T ss_pred eC
Confidence 96
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=354.89 Aligned_cols=286 Identities=19% Similarity=0.273 Sum_probs=257.6
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCE
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 423 (1130)
.+|.+.|++++|+|||+ +|++|+.||+|+|||+.+++.+. .+..|...|.+++|+|+|++
T Consensus 52 ~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~-------------------~~~~~~~~v~~~~~s~~~~~ 111 (340)
T 1got_B 52 RGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVH-------------------AIPLRSSWVMTCAYAPSGNY 111 (340)
T ss_dssp CCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEE-------------------EEECSSSCEEEEEECTTSSE
T ss_pred cCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcce-------------------EeecCCccEEEEEECCCCCE
Confidence 35999999999999998 69999999999999999888765 46689999999999999999
Q ss_pred EEEEeCCCeEEEEEecCCcc-ceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEE
Q 001184 424 IGVAFTKHLIHLYTYQGSND-LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVY 501 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~~~~-~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~ 501 (1130)
||+|+.|+.|++||+.++.. ......+.+|.+.|.++.|++++. +++++.|++|++|| .+++.+..+.+|.+.|.
T Consensus 112 l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~ 188 (340)
T 1got_B 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFTGHTGDVM 188 (340)
T ss_dssp EEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEcCCCCceE
Confidence 99999999999999987642 233446789999999999999875 88999999999999 88899999999999999
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeE
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKR 581 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1130)
+++|+| ++.++++++.|+.|++||+++......+..|...|.+++|+|++++|++++. ++.|++||+++++.+.
T Consensus 189 ~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd~~~~~~~~ 262 (340)
T 1got_B 189 SLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDLRADQELM 262 (340)
T ss_dssp EEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTTEEEE
T ss_pred EEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC----CCcEEEEECCCCcEEE
Confidence 999976 5579999999999999999999988899999999999999999999999986 8999999999988877
Q ss_pred EEeccc-CceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001184 582 TYIGFR-KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1130)
Q Consensus 582 ~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~ 660 (1130)
.+.... ...+.+++|+|+++++++|+.||.|++||+.+++.+..+..|.. .|.+++|+|++.+|++|+.|+.|++||
T Consensus 263 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~--~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCC--cEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 765322 23689999999999999999999999999999999888876654 899999999999999999999999996
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=356.23 Aligned_cols=289 Identities=19% Similarity=0.254 Sum_probs=259.7
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCE
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 423 (1130)
.+|...|++++|+|+++ +||+|+.||+|+|||..+++... .+..|...|.+++|+|+|++
T Consensus 61 ~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~-------------------~~~~~~~~v~~~~~sp~g~~ 120 (354)
T 2pbi_B 61 KGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEH-------------------AVTMPCTWVMACAYAPSGCA 120 (354)
T ss_dssp ECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEE-------------------EEECSSSCCCEEEECTTSSE
T ss_pred cCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcce-------------------EEecCCCCEEEEEECCCCCE
Confidence 36999999999999998 59999999999999998887654 35678889999999999999
Q ss_pred EEEEeCCCeEEEEEecCCcc---ceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcC
Q 001184 424 IGVAFTKHLIHLYTYQGSND---LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAP 499 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~~~~---~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~ 499 (1130)
||+|+.|+.+++|++..... ......+.+|.+.|.+++|+|++. .|++++.|++|++|| .+++++..+.+|...
T Consensus 121 lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~ 198 (354)
T 2pbi_B 121 IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSFHGHGAD 198 (354)
T ss_dssp EEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred EEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC
Confidence 99999999999999865421 123345778999999999999999 799999999999999 889999999999999
Q ss_pred EEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCce
Q 001184 500 VYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL 579 (1130)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1130)
|.++++++.+++.+|++|+.||+|++||++++.....+..|...|.+++|+|++++|++++. |+.|++||+++++.
T Consensus 199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~lwd~~~~~~ 274 (354)
T 2pbi_B 199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRLYDLRADRE 274 (354)
T ss_dssp EEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTTEE
T ss_pred eEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEEEECCCCcE
Confidence 99999998888899999999999999999999988899999999999999999999999986 89999999999887
Q ss_pred eEEEeccc-CceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEE
Q 001184 580 KRTYIGFR-KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKI 658 (1130)
Q Consensus 580 ~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~i 658 (1130)
+..+..+. ...+.+++|+|+++++++|+.|+.|++||+.+++.+..+..|.. .|.+++|+|++++|++|+.|+.|++
T Consensus 275 ~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~--~v~~l~~spdg~~l~sgs~D~~v~v 352 (354)
T 2pbi_B 275 VAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN--RVSTLRVSPDGTAFCSGSWDHTLRV 352 (354)
T ss_dssp EEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS--CEEEEEECTTSSCEEEEETTSEEEE
T ss_pred EEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCC--cEEEEEECCCCCEEEEEcCCCCEEe
Confidence 77766432 23578899999999999999999999999999998888876554 8999999999999999999999999
Q ss_pred EE
Q 001184 659 LA 660 (1130)
Q Consensus 659 w~ 660 (1130)
|+
T Consensus 353 W~ 354 (354)
T 2pbi_B 353 WA 354 (354)
T ss_dssp EC
T ss_pred cC
Confidence 95
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=352.17 Aligned_cols=297 Identities=20% Similarity=0.268 Sum_probs=257.3
Q ss_pred eec-cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC
Q 001184 342 CTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1130)
Q Consensus 342 ~~~-~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 420 (1130)
.++ +|.+.|++++|+|++..+|++|+.|++|++||+.+...... .+...+.+|...|.+++|+||
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~~~~s~d 76 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFG--------------VPVRSFKGHSHIVQDCTLTAD 76 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEE--------------EEEEEEECCSSCEEEEEECTT
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcccc--------------ccceEEeCCcccEEEEEECCC
Confidence 344 59999999999998755799999999999999875432210 112257899999999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCCCcCE
Q 001184 421 GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPV 500 (1130)
Q Consensus 421 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~~~v 500 (1130)
|++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. ++++|+.|++|++||.++.++..+.+|...|
T Consensus 77 g~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v 151 (319)
T 3frx_A 77 GAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIKGQCLATLLGHNDWV 151 (319)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETTSCEEEEECCCSSCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeEEEEeccCCcE
Confidence 9999999999999999999987554 6789999999999999999 8999999999999998889999999999999
Q ss_pred EEEeecccC----CccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC
Q 001184 501 YSVCPHQKE----NIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE 576 (1130)
Q Consensus 501 ~~~~~~~~~----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1130)
.++++.|.. ++..+++++.|+.|++||++.......+..|...|.+++|+|+|++|++++. |+.|++||+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~iwd~~~ 227 (319)
T 3frx_A 152 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIMLWNLAA 227 (319)
T ss_dssp EEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEEEETTT
T ss_pred EEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEEEECCC
Confidence 999998743 4568999999999999999998888888999999999999999999999986 89999999999
Q ss_pred CceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEecc------CCCCCcceEEEcCCCCEEEEE
Q 001184 577 GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE------GGLPSLPRLRFNKEGNLLVVT 650 (1130)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------~~~~~i~~v~~s~~~~~l~~~ 650 (1130)
++.+..+..+ ..+.+++|+|++.++++++.+ .+++|++..+..+..+..+ .+...+.+++|+|+|++|++|
T Consensus 228 ~~~~~~~~~~--~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg 304 (319)
T 3frx_A 228 KKAMYTLSAQ--DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAG 304 (319)
T ss_dssp TEEEEEEECC--SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEE
T ss_pred CcEEEEecCC--CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEe
Confidence 9999888764 369999999999998888754 5999999988777766432 123467899999999999999
Q ss_pred eCCCcEEEEEcCCC
Q 001184 651 TADQGIKILANADG 664 (1130)
Q Consensus 651 ~~dg~i~iw~~~~~ 664 (1130)
+.||.|++|++.++
T Consensus 305 ~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 305 YTDNVIRVWQVMTA 318 (319)
T ss_dssp ETTSCEEEEEEEEC
T ss_pred ecCceEEEEEEeec
Confidence 99999999998654
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-38 Score=345.74 Aligned_cols=288 Identities=17% Similarity=0.281 Sum_probs=251.0
Q ss_pred eec-cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC
Q 001184 342 CTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1130)
Q Consensus 342 ~~~-~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 420 (1130)
+++ +|.+.|++++|+|+|+ +|++|+.||+|+|||+.+++.+. .+.+|...|.+++|+|+
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~-------------------~~~~~~~~v~~~~~~~~ 66 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVR-------------------SIQVTETPVRAGKFIAR 66 (304)
T ss_dssp EEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEE-------------------EEECCSSCEEEEEEEGG
T ss_pred EeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeE-------------------EeeccCCcEEEEEEeCC
Confidence 344 5999999999999998 59999999999999999988765 46789999999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCC-CeeeEecCCCc
Q 001184 421 GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG-RKLFQFEGHEA 498 (1130)
Q Consensus 421 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~-~~~~~~~~h~~ 498 (1130)
+++|++|+.|++|++||+.+++.+. .+.+|.+.|.+++|+|+++ ++++|+.|++|++|| .++ .....+.+|..
T Consensus 67 ~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~ 141 (304)
T 2ynn_A 67 KNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEH 141 (304)
T ss_dssp GTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECCCCS
T ss_pred CCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcccCC
Confidence 9999999999999999999987654 6789999999999999999 899999999999999 555 45577889999
Q ss_pred CEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeec-CCCccEEEEEEec--CCCeEEEeeecCCCCcEEEEeeCC
Q 001184 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD-APGLWCTTMLYSA--DGSRLFSCGTSKEGDSHLVEWNES 575 (1130)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1130)
.|.+++|+|. ++..|++|+.|++|++||++.......+. .+...+..+.|+| ++.+|++++. ++.|++||++
T Consensus 142 ~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iWd~~ 216 (304)
T 2ynn_A 142 FVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWDYQ 216 (304)
T ss_dssp CEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEEETT
T ss_pred cEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEEeCC
Confidence 9999999863 44799999999999999998877666554 4556789999986 7789999986 9999999999
Q ss_pred CCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCC--EEEEEeCC
Q 001184 576 EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGN--LLVVTTAD 653 (1130)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~--~l~~~~~d 653 (1130)
+++++..+.+|.. .+.+++|+|++++|++|+.||.|++||+.+++.+..+..+.. .+.+++|+|++. ++++|+.|
T Consensus 217 ~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~asg~~~ 293 (304)
T 2ynn_A 217 TKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASGFDN 293 (304)
T ss_dssp TTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSS--SEEEEEECTTCGGGCEEEEETT
T ss_pred CCccceeeCCCCC-CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCc--cEEEEEECCCCCceEEEEecCC
Confidence 9999999999876 899999999999999999999999999999999998876544 789999999875 57777665
Q ss_pred CcEEEEEcCC
Q 001184 654 QGIKILANAD 663 (1130)
Q Consensus 654 g~i~iw~~~~ 663 (1130)
| +.+|++..
T Consensus 294 g-~~~~~~~~ 302 (304)
T 2ynn_A 294 G-FTVLSLGN 302 (304)
T ss_dssp E-EEEEECC-
T ss_pred c-eEEEEecc
Confidence 5 66777654
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=362.05 Aligned_cols=301 Identities=18% Similarity=0.271 Sum_probs=260.4
Q ss_pred cceeeec-cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEE
Q 001184 338 RAVACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVA 416 (1130)
Q Consensus 338 ~~~~~~~-~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 416 (1130)
..+.+++ +|.+.|++++|+|+|+ +|++|+.||+|+|||+.+++... .+.+|...|.+++
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~-------------------~~~~h~~~v~~~~ 115 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKN-WIVSASQDGRLIVWNALTSQKTH-------------------AIKLHCPWVMECA 115 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEE-------------------EEECCCTTCCCCE
T ss_pred eEEeecccccccEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCccce-------------------EEecCCCCEEEEE
Confidence 3445555 5999999999999998 49999999999999999988765 4778999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEecCCcc----ceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeee
Q 001184 417 WSPDGNFIGVAFTKHLIHLYTYQGSND----LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLF 491 (1130)
Q Consensus 417 ~spdg~~las~~~d~~i~vwd~~~~~~----~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~ 491 (1130)
|+|+|++||+|+.|+.|++||+.+... ......+.+|.+.|.+++|+|++.. .|++|+.|++|++|| .+++.+.
T Consensus 116 ~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~ 194 (380)
T 3iz6_a 116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRIS 194 (380)
T ss_dssp ECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEE
T ss_pred ECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEE
Confidence 999999999999999999999975421 1122357899999999999998654 699999999999999 8888887
Q ss_pred Ee-----cCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccC-CcceeeecCCCccEEEEEEecCCCeEEEeeecCCC
Q 001184 492 QF-----EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN-VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEG 565 (1130)
Q Consensus 492 ~~-----~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1130)
.+ .+|...|.+++|++ .++.+|++|+.|++|++||++. ......+..|...|.+++|+|++++|++++.
T Consensus 195 ~~~~~~~~~h~~~v~~~~~~~-~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~---- 269 (380)
T 3iz6_a 195 IFGSEFPSGHTADVLSLSINS-LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD---- 269 (380)
T ss_dssp EECCCSSSSCCSCEEEEEECS-SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS----
T ss_pred EeecccCCCCccCeEEEEeec-CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC----
Confidence 77 68999999999975 3557999999999999999984 4566678889999999999999999999986
Q ss_pred CcEEEEeeCCCCceeEEEecccC------ceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEec--cCCCCCcce
Q 001184 566 DSHLVEWNESEGALKRTYIGFRK------KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA--EGGLPSLPR 637 (1130)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~~~i~~ 637 (1130)
|+.|++||+++++.+..+..+.. ..+.+++|+|+++++++|+.||.|++||...++.+..+.. .++...|.+
T Consensus 270 D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~ 349 (380)
T 3iz6_a 270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISC 349 (380)
T ss_dssp SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCE
T ss_pred CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEE
Confidence 89999999999999888875432 1378999999999999999999999999999988877632 245558999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 638 LRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 638 v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
++|+|+|.+|++|+.|++|++|++...
T Consensus 350 l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 350 LGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred EEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 999999999999999999999998765
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=343.32 Aligned_cols=293 Identities=16% Similarity=0.260 Sum_probs=258.5
Q ss_pred CeeeEecCCCcCEEEEeeccc--CCccEEEEEecCCcEEEEEccCCcce--eeecCCCccEEEEEEecCCCeEEEeeecC
Q 001184 488 RKLFQFEGHEAPVYSVCPHQK--ENIHFIFSTAVDGKIKAWLYDNVGSR--VDYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1130)
Q Consensus 488 ~~~~~~~~h~~~v~~~~~~~~--~~~~~l~s~s~dg~i~vwd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1130)
.....+.+|.+.|++++|++. .++.+|++|+.|++|++|+++..... ..+.+|...|.+++|++++.++++++.
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~-- 100 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSL-- 100 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEET--
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeC--
Confidence 344566789999999999874 35679999999999999999876543 367889999999999999999999986
Q ss_pred CCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCC
Q 001184 564 EGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1130)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~ 643 (1130)
|+.|++||+.+++.+..+..+.. .+.+++|+|+++++++++.||.|++|++.+++....+..+.. .+.+++|+|+
T Consensus 101 --D~~i~lWd~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~--~v~~~~~spd 175 (321)
T 3ow8_A 101 --DAHIRLWDLENGKQIKSIDAGPV-DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK--FILSIAYSPD 175 (321)
T ss_dssp --TSEEEEEETTTTEEEEEEECCTT-CCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSS--CEEEEEECTT
T ss_pred --CCcEEEEECCCCCEEEEEeCCCc-cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCc--eEEEEEECCC
Confidence 99999999999999999887655 688899999999999999999999999999998888776654 7999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCc
Q 001184 644 GNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADS 723 (1130)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1130)
+++|++++.|+.|++||+.++. ...
T Consensus 176 g~~lasg~~dg~i~iwd~~~~~-~~~------------------------------------------------------ 200 (321)
T 3ow8_A 176 GKYLASGAIDGIINIFDIATGK-LLH------------------------------------------------------ 200 (321)
T ss_dssp SSEEEEEETTSCEEEEETTTTE-EEE------------------------------------------------------
T ss_pred CCEEEEEcCCCeEEEEECCCCc-EEE------------------------------------------------------
Confidence 9999999999999999986541 000
Q ss_pred cccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCC
Q 001184 724 AARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNP 803 (1130)
Q Consensus 724 ~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~ 803 (1130)
.+
T Consensus 201 ---------------------------------------------------------------------~~--------- 202 (321)
T 3ow8_A 201 ---------------------------------------------------------------------TL--------- 202 (321)
T ss_dssp ---------------------------------------------------------------------EE---------
T ss_pred ---------------------------------------------------------------------EE---------
Confidence 00
Q ss_pred CcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEE
Q 001184 804 SGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAF 882 (1130)
Q Consensus 804 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~ 882 (1130)
.+|...|.+++|+|++++|++++ |+.|++||+.+++....+.+|...|.+++|
T Consensus 203 --------------------------~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 256 (321)
T 3ow8_A 203 --------------------------EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 256 (321)
T ss_dssp --------------------------CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred --------------------------cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEE
Confidence 14677889999999999999998 899999999999999999999999999999
Q ss_pred eCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECC
Q 001184 883 HPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTD 947 (1130)
Q Consensus 883 sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~ 947 (1130)
+| ++.+|++|+.||+|++||+.+++++.++.+|.+.|.+++|+|++++|++++.|++|++||..
T Consensus 257 sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 257 CP-DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CC-CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99 89999999999999999999999999999999999999999999999999999999999963
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-38 Score=352.33 Aligned_cols=294 Identities=14% Similarity=0.140 Sum_probs=237.8
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeC------cCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEc
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCG------DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 418 (1130)
.|...|++++|||||+ +||+|+. |+.|++|+..++....... ....+|...|.+++|+
T Consensus 40 ~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~---------------~~~~~~~~~V~~~~~s 103 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESLC---------------TAGVQTEAGVTDVAWV 103 (357)
T ss_dssp CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGGC---------------SEEEECSSCEEEEEEE
T ss_pred cccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeEe---------------cccCCCCCCEEEEEEc
Confidence 4999999999999998 6899987 6789999888776543211 1245788999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCcccee-eeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCC
Q 001184 419 PDGNFIGVAFTKHLIHLYTYQGSNDLCQ-SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGH 496 (1130)
Q Consensus 419 pdg~~las~~~d~~i~vwd~~~~~~~~~-~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h 496 (1130)
||+++| +++.||+|+|||+.+++.... .....+|.+.|++++|+|+++ +|++|+.|++|++|| .+++++..+.+|
T Consensus 104 ~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~~h 180 (357)
T 4g56_B 104 SEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYNAH 180 (357)
T ss_dssp TTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCC
Confidence 998655 577899999999998765432 234568999999999999999 899999999999999 889999999999
Q ss_pred CcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeee--cCCCccEEEEEEecCC-CeEEEeeecCCCCcEEEEee
Q 001184 497 EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY--DAPGLWCTTMLYSADG-SRLFSCGTSKEGDSHLVEWN 573 (1130)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd 573 (1130)
...|.+++|++..+ .++++++.|++|++||+++.+....+ ..+...+.+++|+|++ .+|++++. ++.|++||
T Consensus 181 ~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~----d~~i~~wd 255 (357)
T 4g56_B 181 SSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE----TGNVSLVN 255 (357)
T ss_dssp SSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES----SSCEEEEE
T ss_pred CCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec----ccceeEEE
Confidence 99999999976543 47899999999999999988766544 3455679999999985 56667765 89999999
Q ss_pred CCCCceeEEEecccCceeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcC-CCCEEEEEe
Q 001184 574 ESEGALKRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK-EGNLLVVTT 651 (1130)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~-~~~~l~~~~ 651 (1130)
+++++.++.+.+|.. .|.+++|+|++ ++|++|+.|++|+|||+++++.+..+ +|...|++++|+| ++.+|++++
T Consensus 256 ~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~---~H~~~V~~vafsP~d~~~l~s~s 331 (357)
T 4g56_B 256 IKNPDSAQTSAVHSQ-NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL---SHRDFVTGVAWSPLDHSKFTTVG 331 (357)
T ss_dssp SSCGGGCEEECCCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC---CCSSCEEEEEECSSSTTEEEEEE
T ss_pred CCCCcEeEEEeccce-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC---CCCCCEEEEEEeCCCCCEEEEEc
Confidence 999999999998766 89999999987 57899999999999999999887665 3445899999998 899999999
Q ss_pred CCCcEEEEEcCCCch
Q 001184 652 ADQGIKILANADGLR 666 (1130)
Q Consensus 652 ~dg~i~iw~~~~~~~ 666 (1130)
.||.|++|++....+
T Consensus 332 ~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 332 WDHKVLHHHLPSEGR 346 (357)
T ss_dssp TTSCEEEEECC----
T ss_pred CCCeEEEEECCCCCc
Confidence 999999999976533
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-37 Score=346.11 Aligned_cols=300 Identities=17% Similarity=0.263 Sum_probs=247.0
Q ss_pred eeeec-cCCC-CEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEE
Q 001184 340 VACTM-HQGS-SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1130)
Q Consensus 340 ~~~~~-~h~~-~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 417 (1130)
++..+ +|.. .|++++|+|+|+ +||+|+.|++|+|||+.+++.... .....+|...|.+++|
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~----------------~~~~~~h~~~v~~~~~ 69 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICK----------------SVLSEGHQRTVRKVAW 69 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEE----------------EEECSSCSSCEEEEEE
T ss_pred EeeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceee----------------eeeccccCCcEEEEEE
Confidence 44444 4877 999999999998 599999999999999987764321 1134689999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCC---CeeeEe
Q 001184 418 SPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG---RKLFQF 493 (1130)
Q Consensus 418 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~---~~~~~~ 493 (1130)
+|||++||+|+.|++|++||+..+. ......+.+|...|.+++|+|+++ +|++|+.|++|++|| .++ .++..+
T Consensus 70 sp~g~~l~s~s~D~~v~iw~~~~~~-~~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 146 (345)
T 3fm0_A 70 SPCGNYLASASFDATTCIWKKNQDD-FECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVSVL 146 (345)
T ss_dssp CTTSSEEEEEETTSCEEEEEECCC--EEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEEEE
T ss_pred CCCCCEEEEEECCCcEEEEEccCCC-eEEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEEEe
Confidence 9999999999999999999998764 223446889999999999999999 899999999999999 444 345678
Q ss_pred cCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcc--eeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEE
Q 001184 494 EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS--RVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1130)
Q Consensus 494 ~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1130)
.+|...|.+++|+|+ +.+|++++.|++|++||.+.... ...+..|...|.+++|+|+|++|++++. |+.|++
T Consensus 147 ~~h~~~v~~~~~~p~--~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~----D~~v~i 220 (345)
T 3fm0_A 147 NSHTQDVKHVVWHPS--QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD----DRTVRI 220 (345)
T ss_dssp CCCCSCEEEEEECSS--SSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEE
T ss_pred cCcCCCeEEEEECCC--CCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC----CCeEEE
Confidence 899999999999764 57999999999999999987653 3577889999999999999999999986 899999
Q ss_pred eeCCCC---------------ceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc----eeEE---Eecc
Q 001184 572 WNESEG---------------ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN----MLTS---TEAE 629 (1130)
Q Consensus 572 wd~~~~---------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~---~~~~ 629 (1130)
||.... +++..+.+.+...+..++|+|++..+++++.|+.|++|+...+. .... ....
T Consensus 221 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~ 300 (345)
T 3fm0_A 221 WRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQ 300 (345)
T ss_dssp EEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETT
T ss_pred eccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecc
Confidence 996321 23455666556689999999999999999999999999987643 1111 1123
Q ss_pred CCCCCcceEEEcCCC-CEEEEEeCCCcEEEEEcCCCc
Q 001184 630 GGLPSLPRLRFNKEG-NLLVVTTADQGIKILANADGL 665 (1130)
Q Consensus 630 ~~~~~i~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~ 665 (1130)
+|...|.+++|+|++ .+|++++.||.|++|++.++.
T Consensus 301 ~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 301 AHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp SSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred cccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 455689999999987 599999999999999998774
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=345.13 Aligned_cols=297 Identities=13% Similarity=0.133 Sum_probs=238.1
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeecccccc-ceeeeeecCCCccEEEEEEcCCCCE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSM-MLQAAIVKDSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~V~~v~~spdg~~ 423 (1130)
.|...|.+++|||||+ +|++++ |+++++||.... +|+...... .........|...|.+++|+||+ .
T Consensus 28 ~~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~ 95 (344)
T 4gqb_B 28 CMERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSLW---------LFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-G 95 (344)
T ss_dssp SCCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEEE---------EESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-E
T ss_pred cccCCEEEEEECCCCC-EEEEEe-CCceEEeeceee---------eeccccccCCcceeeeeeccCCCEEEEEEeCCC-e
Confidence 3677899999999998 577777 778899974211 111000000 00011233466789999999985 6
Q ss_pred EEEEeCCCeEEEEEecCCccceee-eeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEE
Q 001184 424 IGVAFTKHLIHLYTYQGSNDLCQS-LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVY 501 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~-~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~ 501 (1130)
|++|+.||+|+|||+.+++.+... ..+.+|.+.|++++|+|+|+ +|++|+.|++|++|| .+++++..+.+|...|.
T Consensus 96 l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~ 173 (344)
T 4gqb_B 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT 173 (344)
T ss_dssp EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceE
Confidence 889999999999999998765432 34568999999999999999 899999999999999 88999999999999999
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcceeeec--CCCccEEEEEEecCC-CeEEEeeecCCCCcEEEEeeCCCCc
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD--APGLWCTTMLYSADG-SRLFSCGTSKEGDSHLVEWNESEGA 578 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1130)
+++|++... .+|++++.|++|++||+++.+....+. .+...+.+++|+|++ +++++++. ++.|++||+++++
T Consensus 174 ~~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~----dg~v~~wd~~~~~ 248 (344)
T 4gqb_B 174 CVAASPHKD-SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE----NGTVSLVDTKSTS 248 (344)
T ss_dssp EEEECSSCT-TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET----TSEEEEEESCC--
T ss_pred EEEecCCCC-CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc----CCcEEEEECCCCc
Confidence 999976543 588999999999999999988777654 345579999999954 56777765 8999999999999
Q ss_pred eeEEEecccCceeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCC-EEEEEeCCCcE
Q 001184 579 LKRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGN-LLVVTTADQGI 656 (1130)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~-~l~~~~~dg~i 656 (1130)
.+..+.+|.. .|.+++|+|++ ++|++|+.|++|+|||+.+++++. +. +|...|++++|+|+++ +|++++.|++|
T Consensus 249 ~~~~~~~h~~-~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~--~H~~~V~~v~~sp~~~~llas~s~D~~v 324 (344)
T 4gqb_B 249 CVLSSAVHSQ-CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ--AHRDFVRDATWSPLNHSLLTTVGWDHQV 324 (344)
T ss_dssp CCEEEECCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC--CCSSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred EEEEEcCCCC-CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec--CCCCCEEEEEEeCCCCeEEEEEcCCCeE
Confidence 9999999876 89999999998 578999999999999999987654 33 4455899999999875 67799999999
Q ss_pred EEEEcCCC
Q 001184 657 KILANADG 664 (1130)
Q Consensus 657 ~iw~~~~~ 664 (1130)
++|++.+.
T Consensus 325 ~~w~v~~~ 332 (344)
T 4gqb_B 325 VHHVVPTE 332 (344)
T ss_dssp EEEECCC-
T ss_pred EEEECCCC
Confidence 99999765
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=356.22 Aligned_cols=286 Identities=18% Similarity=0.319 Sum_probs=258.4
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
.+.+|.+.|++++|+|++++||+|+.||+|++||+.+++... .+.+|.+.|.+++|+|+++ +|++|+.|++|++|
T Consensus 103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iw 177 (410)
T 1vyh_C 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLW 177 (410)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEE
T ss_pred eecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEE
Confidence 366999999999999999999999999999999999987654 6889999999999999999 89999999999999
Q ss_pred e-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeec
Q 001184 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
| .+++++..+.+|...|.+++|+| ++.+|++++.|++|++||++++.....+..|...|.++.++|+++++++++.
T Consensus 178 d~~~~~~~~~~~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~- 254 (410)
T 1vyh_C 178 DFQGFECIRTMHGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN- 254 (410)
T ss_dssp ETTSSCEEECCCCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET-
T ss_pred eCCCCceeEEEcCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC-
Confidence 9 78889999999999999999976 4579999999999999999999998899999999999999999999999986
Q ss_pred CCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCC--------------------CCEEEEEeCCCcEEEEeCCCCce
Q 001184 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTT--------------------RNRILAAGEDNQIKFWDMDNVNM 622 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~dg~i~vwd~~~~~~ 622 (1130)
++.|++||+.+++....+.+|.. .+.+++|+|+ +.++++|+.|+.|++||+.++++
T Consensus 255 ---D~~v~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~ 330 (410)
T 1vyh_C 255 ---DQTVRVWVVATKECKAELREHRH-VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC 330 (410)
T ss_dssp ---TSCEEEEETTTCCEEEEECCCSS-CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE
T ss_pred ---CCeEEEEECCCCceeeEecCCCc-eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCce
Confidence 89999999999999999988766 8999999996 67899999999999999999999
Q ss_pred eEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeecccccccc
Q 001184 623 LTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSK 702 (1130)
Q Consensus 623 ~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~ 702 (1130)
+..+..|.. .|.+++|+|++++|++++.|+.|++||+.++. ....+
T Consensus 331 ~~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~-~~~~~------------------------------- 376 (410)
T 1vyh_C 331 LMTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNKR-CMKTL------------------------------- 376 (410)
T ss_dssp EEEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTSC-CCEEE-------------------------------
T ss_pred EEEEECCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eEEEE-------------------------------
Confidence 988876654 79999999999999999999999999986541 11100
Q ss_pred ccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeE
Q 001184 703 AERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGI 782 (1130)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 782 (1130)
.+|...|.+++|+|++..+
T Consensus 377 -------------------------------------------------------------~~h~~~v~~l~~~~~~~~l 395 (410)
T 1vyh_C 377 -------------------------------------------------------------NAHEHFVTSLDFHKTAPYV 395 (410)
T ss_dssp -------------------------------------------------------------ECCSSCEEEEEECSSSSCE
T ss_pred -------------------------------------------------------------cCCCCcEEEEEEcCCCCEE
Confidence 1277889999999999999
Q ss_pred EEeeeCCeEEeeec
Q 001184 783 LALWSNGVQKLWKW 796 (1130)
Q Consensus 783 ~~~~~dg~i~iw~~ 796 (1130)
++++.|+.|++|++
T Consensus 396 ~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 396 VTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEETTSEEEEEC-
T ss_pred EEEeCCCcEEEEeC
Confidence 99999999999974
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-37 Score=341.60 Aligned_cols=286 Identities=14% Similarity=0.230 Sum_probs=254.7
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
.+.+|.+.|.+++|+||+++|++|+.||+|++||+.+++.+. .+..|...|.+++|+|+++ ++++|+.|+.|++|
T Consensus 50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw 124 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIY 124 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEE
Confidence 578999999999999999999999999999999999887554 5788999999999999999 89999999999999
Q ss_pred e-cCC----CeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEE
Q 001184 484 D-LSG----RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFS 558 (1130)
Q Consensus 484 d-~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1130)
| .++ .....+.+|.+.|.++.|.+. ..+++++.|++|++||++++.....+..|...|.+++|+|+++++++
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDD---NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCC---CcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence 9 443 345678899999999999653 35899999999999999999988899999999999999999999999
Q ss_pred eeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceE
Q 001184 559 CGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1130)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v 638 (1130)
++. ++.|++||++++..+..+.+|.. .+.+++|+|++++|++|+.||.|++||+.+++.+..+........|.++
T Consensus 202 g~~----d~~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~ 276 (340)
T 1got_B 202 GAC----DASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276 (340)
T ss_dssp EET----TSCEEEEETTTCSEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred EeC----CCcEEEEECCCCeeEEEEcCCcC-CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEE
Confidence 986 89999999999999999998766 8999999999999999999999999999999888877665555579999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccc
Q 001184 639 RFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTIL 718 (1130)
Q Consensus 639 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~ 718 (1130)
+|+|++++|++|+.|+.|++||+.++. ....
T Consensus 277 ~~s~~g~~l~~g~~d~~i~vwd~~~~~-~~~~------------------------------------------------ 307 (340)
T 1got_B 277 SFSKSGRLLLAGYDDFNCNVWDALKAD-RAGV------------------------------------------------ 307 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCC-EEEE------------------------------------------------
T ss_pred EECCCCCEEEEECCCCeEEEEEcccCc-EeeE------------------------------------------------
Confidence 999999999999999999999986541 1000
Q ss_pred cCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeee
Q 001184 719 NGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWK 795 (1130)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~ 795 (1130)
+ .+|...|.+++|+|+|..|++++.|+.|++|+
T Consensus 308 -----------------------------------------~---~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 308 -----------------------------------------L---AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp -----------------------------------------E---ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred -----------------------------------------e---ecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 0 23788999999999999999999999999995
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-37 Score=347.45 Aligned_cols=311 Identities=16% Similarity=0.199 Sum_probs=230.7
Q ss_pred ccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeC------CeEEeeecCCCCCCCCc
Q 001184 732 RNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSN------GVQKLWKWNRTEQNPSG 805 (1130)
Q Consensus 732 ~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d------g~i~iw~~~~~~~~~~~ 805 (1130)
++.++.+.....|++.... ...|...|.+++|+|||++|++++.+ +.+++|+.
T Consensus 19 ~~~~~g~~~~~~w~~p~~~------------p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~--------- 77 (357)
T 4g56_B 19 YFQSNGSSKGSAWGRPVTA------------PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKD--------- 77 (357)
T ss_dssp ---------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESS---------
T ss_pred EEecCCCccccccCCCCCC------------cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEEC---------
Confidence 3444445677888765321 13488999999999999999999874 45555543
Q ss_pred ccccccccccccCCCCcceeccC--CCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEE----EEeCCCCCeEE
Q 001184 806 KATAAVAPQHWQPSNGLLMTNDV--PENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMT----TFMSPPPASTF 879 (1130)
Q Consensus 806 ~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~ 879 (1130)
.++....... ..+|...|.+++|+|++++++++.||+|+|||+.+++... ...+|...|++
T Consensus 78 -------------~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~ 144 (357)
T 4g56_B 78 -------------PEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKT 144 (357)
T ss_dssp -------------CC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEE
T ss_pred -------------CCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEE
Confidence 3332111111 1157888999999999988877779999999998876543 34478999999
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCC-eEEEEeCCCcEEEEECCCCcccceeeEe
Q 001184 880 LAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLN-ILVSSGSDAQLIFWNTDTWEKRKSIAIQ 958 (1130)
Q Consensus 880 l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~-~L~s~s~Dg~i~vwd~~~~~~~~~~~~~ 958 (1130)
++|+| ++++|++|+.||+|++||+.+++++..+.+|...|++++|+|++. ++++++.|++|++||+.+++.....
T Consensus 145 v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~--- 220 (357)
T 4g56_B 145 LSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI--- 220 (357)
T ss_dssp EEECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC---
T ss_pred EEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee---
Confidence 99999 899999999999999999999999999999999999999999985 7899999999999999986643322
Q ss_pred ccCCCCCCCeEEEEEcCCC-cEEEE-EcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCC-CEEEEEeCCCcEEE
Q 001184 959 LPAGKLPVGETRVQFHSDQ-VRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNS-QLIYATFTDGSIGV 1035 (1130)
Q Consensus 959 ~~~~~~~~~v~~~~~s~d~-~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~t~~~Dg~i~v 1035 (1130)
....+...+.+++|+|++ .+|++ +.|+.|++||+.+++.+..+..+ ...|++++|+|++ ++||+|+.||+|+|
T Consensus 221 -~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~---~~~v~~l~~sp~~~~~lasgs~D~~i~i 296 (357)
T 4g56_B 221 -DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVH---SQNITGLAYSYHSSPFLASISEDCTVAV 296 (357)
T ss_dssp -CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCC---SSCEEEEEECSSSSCCEEEEETTSCEEE
T ss_pred -eeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecc---ceeEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence 222334678999999985 56666 57899999999999998888766 7899999999997 58999999999999
Q ss_pred EeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q 001184 1036 FDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1096 (1130)
Q Consensus 1036 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~ 1096 (1130)
||+.+++.+..+. |...+.+++|+|.++.+|++|+.||+|++|++.+..
T Consensus 297 wd~~~~~~~~~~~------------H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 297 LDADFSEVFRDLS------------HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp ECTTSCEEEEECC------------CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred EECCCCcEeEECC------------CCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 9999998765442 334567899999888999999999999999997654
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-37 Score=341.64 Aligned_cols=295 Identities=14% Similarity=0.168 Sum_probs=230.0
Q ss_pred CccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceec--cCCCCCCCceeEEEEec
Q 001184 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTN--DVPENAEDVVPCVALSK 843 (1130)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~--~~~~~~~~~i~~l~~s~ 843 (1130)
+...|.+++|+|||+.|++++ |+++++|+.... .|+......... .....+...|.+++|+|
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 92 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSLW---------------LFKDPCAAPNEGFCSAGVQTEAGVADLTWVG 92 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEE---------------EESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeeceee---------------eeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence 667799999999999877665 778888863211 111000000000 00002467899999999
Q ss_pred CCCEEEEEeCCeEEEEECCCceeEEE----EeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCC
Q 001184 844 NDSYVMSAGGGKVSLFNMMNFKVMTT----FMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKH 919 (1130)
Q Consensus 844 dg~~la~~~dg~i~iwd~~~~~~~~~----~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~ 919 (1130)
|+.+++.+.||+|+|||+.+++.+.. +.+|...|++++|+| ++++|++|+.||+|++||+.+++++..+.+|.+.
T Consensus 93 d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~ 171 (344)
T 4gqb_B 93 ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ 171 (344)
T ss_dssp TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCc
Confidence 97555444499999999998876544 448999999999999 8999999999999999999999999999999999
Q ss_pred eeEEEEccCCC-eEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCC-CcEEEE-EcCCcEEEEECCCc
Q 001184 920 ITGLAFSTNLN-ILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSD-QVRLLV-NHETQLAIYDGSKM 996 (1130)
Q Consensus 920 V~~l~~s~dg~-~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~~-~~d~~i~v~d~~~~ 996 (1130)
|++++|+|++. +|++++.|++|++||+.+++..... ....+...+.+++|+|+ +.++++ +.|+.|++||+.++
T Consensus 172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~ 247 (344)
T 4gqb_B 172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI----GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST 247 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC----C----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-
T ss_pred eEEEEecCCCCCceeeeccccccccccccccceeeee----ecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC
Confidence 99999999985 7899999999999999987653322 22223357899999995 456666 57999999999999
Q ss_pred eeeeeeecCCCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCC
Q 001184 997 ECIRQWVPQDVLSSPISSAAYSCNS-QLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEP 1075 (1130)
Q Consensus 997 ~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1075 (1130)
+++..+.+| ...|++++|+||| ++|++|+.|++|+|||+.++++.. +. +|...+.+++|+|++.
T Consensus 248 ~~~~~~~~h---~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~-----------~H~~~V~~v~~sp~~~ 312 (344)
T 4gqb_B 248 SCVLSSAVH---SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ-----------AHRDFVRDATWSPLNH 312 (344)
T ss_dssp -CCEEEECC---SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC-----------CCSSCEEEEEECSSST
T ss_pred cEEEEEcCC---CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec-----------CCCCCEEEEEEeCCCC
Confidence 999998877 7899999999998 589999999999999999987643 22 3445677899999877
Q ss_pred CEEEEEeCCCcEEEEeCCCCc
Q 001184 1076 NQLAVGLTDGSVKVIEPSETE 1096 (1130)
Q Consensus 1076 ~~l~s~~~Dg~v~vW~~~~~~ 1096 (1130)
.+|++|+.||+|++|++.++.
T Consensus 313 ~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 313 SLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp TEEEEEETTSCEEEEECCC--
T ss_pred eEEEEEcCCCeEEEEECCCCC
Confidence 789999999999999998765
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=351.05 Aligned_cols=243 Identities=17% Similarity=0.239 Sum_probs=190.5
Q ss_pred cCCCccEEEEEEcCCCC-EEEEEeCCCeEEEEEe----cCCccc---eeeeeeec----------CCCCeeEEEEecCCC
Q 001184 406 KDSSISVSRVAWSPDGN-FIGVAFTKHLIHLYTY----QGSNDL---CQSLEIDA----------HVGGVNDLAFSYPNK 467 (1130)
Q Consensus 406 ~~h~~~V~~v~~spdg~-~las~~~d~~i~vwd~----~~~~~~---~~~~~~~~----------h~~~V~~i~~s~d~~ 467 (1130)
..|.+.|.+++|+|+|+ +||+|+.|+.|++||+ .+++.+ .....+.. |.+.|++++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 45668999999999999 9999999999999999 887620 01112222 688999999999999
Q ss_pred ceEEEEEcCCCcEEEEecCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCcc----
Q 001184 468 QLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLW---- 543 (1130)
Q Consensus 468 ~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~---- 543 (1130)
+|++++.|+.|++||.+++.+..+.+|...|.+++|++ ++.+|++++.|+.|++||+.+......+..+...
T Consensus 122 --~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 197 (425)
T 1r5m_A 122 --SIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSI 197 (425)
T ss_dssp --EEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEEECCC-------
T ss_pred --EEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccce
Confidence 89999999999999988999999999999999999965 5579999999999999999998888877777666
Q ss_pred -----------EEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcE
Q 001184 544 -----------CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQI 612 (1130)
Q Consensus 544 -----------v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 612 (1130)
+.+++|++++. +++++. ++.|++||+.+++.+..+.+|.. .+.+++|+|++++|++++.||.|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~g~i~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i 271 (425)
T 1r5m_A 198 NAENHSGDGSLGVDVEWVDDDK-FVIPGP----KGAIFVYQITEKTPTGKLIGHHG-PISVLEFNDTNKLLLSASDDGTL 271 (425)
T ss_dssp --------CCCBSCCEEEETTE-EEEECG----GGCEEEEETTCSSCSEEECCCSS-CEEEEEEETTTTEEEEEETTSCE
T ss_pred eeccccCCcceeeEEEEcCCCE-EEEEcC----CCeEEEEEcCCCceeeeeccCCC-ceEEEEECCCCCEEEEEcCCCEE
Confidence 89999999865 556654 89999999999999999887665 89999999999999999999999
Q ss_pred EEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 613 KFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 613 ~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
++||+.+++.+..+..+.. .+.+++|+|++ ++++++.|+.|++||+
T Consensus 272 ~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~-~l~~~~~d~~i~i~d~ 317 (425)
T 1r5m_A 272 RIWHGGNGNSQNCFYGHSQ--SIVSASWVGDD-KVISCSMDGSVRLWSL 317 (425)
T ss_dssp EEECSSSBSCSEEECCCSS--CEEEEEEETTT-EEEEEETTSEEEEEET
T ss_pred EEEECCCCccceEecCCCc--cEEEEEECCCC-EEEEEeCCCcEEEEEC
Confidence 9999987755544433222 44555555544 4455555555555544
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-36 Score=329.66 Aligned_cols=286 Identities=20% Similarity=0.309 Sum_probs=253.2
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCE
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 423 (1130)
.+|...|++++|+|+|+ +|++|+.||.|+||++.+++... .+.+|...|.+++|+|++++
T Consensus 20 ~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~ 79 (312)
T 4ery_A 20 AGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEK-------------------TISGHKLGISDVAWSSDSNL 79 (312)
T ss_dssp CCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEECTTSSE
T ss_pred cccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccch-------------------hhccCCCceEEEEEcCCCCE
Confidence 36999999999999998 59999999999999999887664 46799999999999999999
Q ss_pred EEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEE
Q 001184 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYS 502 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~ 502 (1130)
|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ ++++|+.|+.|++|| .+++.+..+..|..+|.+
T Consensus 80 l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~ 154 (312)
T 4ery_A 80 LVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 154 (312)
T ss_dssp EEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred EEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEE
Confidence 9999999999999999987554 6789999999999999999 899999999999999 888999999999999999
Q ss_pred EeecccCCccEEEEEecCCcEEEEEccCCcceeeec-CCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeE
Q 001184 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD-APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKR 581 (1130)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1130)
++|++ ++.++++++.||.|++||+++.+....+. .+...+..++|+|++++|++++. ++.|++||+.+++.+.
T Consensus 155 ~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~ 228 (312)
T 4ery_A 155 VHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYSKGKCLK 228 (312)
T ss_dssp EEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETTTTEEEE
T ss_pred EEEcC--CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECCCCcEEE
Confidence 99965 55799999999999999999887766554 45567999999999999999986 8999999999999999
Q ss_pred EEecccCce--eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEe--CCCcEE
Q 001184 582 TYIGFRKKS--AGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT--ADQGIK 657 (1130)
Q Consensus 582 ~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~--~dg~i~ 657 (1130)
.+.+|.... +......+++.++++|+.||.|++||+.+++.+..+..|.. .|.+++|+|+++++++++ .|+.|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~~~~~d~~i~ 306 (312)
T 4ery_A 229 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD--VVISTACHPTENIIASAALENDKTIK 306 (312)
T ss_dssp EECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSS--CEEEEEECSSSSEEEEEECTTTCCEE
T ss_pred EEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCC--cEEEEeecCcCCceEEEEccCCccEE
Confidence 998876532 22233446788999999999999999999999988876654 799999999999999997 699999
Q ss_pred EEEcC
Q 001184 658 ILANA 662 (1130)
Q Consensus 658 iw~~~ 662 (1130)
+|+.+
T Consensus 307 ~W~~d 311 (312)
T 4ery_A 307 LWKSD 311 (312)
T ss_dssp EEECC
T ss_pred EecCC
Confidence 99863
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=334.71 Aligned_cols=297 Identities=13% Similarity=0.207 Sum_probs=254.6
Q ss_pred ceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 001184 578 ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIK 657 (1130)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~ 657 (1130)
+..+.+.+|.. .|.+++|+|++++|++|+.||.|++||..+++....+..+.. .|.+++|+|++.++++++.|+.++
T Consensus 55 ~~~~~l~gH~~-~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~--~v~~~~~sp~g~~lasg~~d~~i~ 131 (354)
T 2pbi_B 55 KTRRTLKGHGN-KVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCT--WVMACAYAPSGCAIACGGLDNKCS 131 (354)
T ss_dssp CEEEEEECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS--CCCEEEECTTSSEEEEESTTSEEE
T ss_pred EEEEEecCCCC-eEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCC--CEEEEEECCCCCEEEEeeCCCCEE
Confidence 45677888776 899999999999999999999999999999998888876654 799999999999999999999999
Q ss_pred EEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCccccccc
Q 001184 658 ILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDI 737 (1130)
Q Consensus 658 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1130)
+|++......
T Consensus 132 v~~~~~~~~~---------------------------------------------------------------------- 141 (354)
T 2pbi_B 132 VYPLTFDKNE---------------------------------------------------------------------- 141 (354)
T ss_dssp EEECCCCTTC----------------------------------------------------------------------
T ss_pred EEEEeccccc----------------------------------------------------------------------
Confidence 9997543100
Q ss_pred CCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCccccccccccccc
Q 001184 738 SDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQ 817 (1130)
Q Consensus 738 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~ 817 (1130)
+ ...... .+
T Consensus 142 -~--------------------------~~~~~~------------------~~-------------------------- 150 (354)
T 2pbi_B 142 -N--------------------------MAAKKK------------------SV-------------------------- 150 (354)
T ss_dssp -C--------------------------SGGGCE------------------EE--------------------------
T ss_pred -c--------------------------ccccce------------------ee--------------------------
Confidence 0 000000 00
Q ss_pred CCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCC-CCcEEEEEeC
Q 001184 818 PSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQ-DNNIIAIGME 895 (1130)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~-~~~~lasg~~ 895 (1130)
.+|...|.+++|+|++..|++++ |++|++||+.+++++..+.+|...|.+++|+|. ++.+|++|+.
T Consensus 151 ------------~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~ 218 (354)
T 2pbi_B 151 ------------AMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGC 218 (354)
T ss_dssp ------------EECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEET
T ss_pred ------------eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeC
Confidence 03778899999999999999998 899999999999999999999999999999884 4689999999
Q ss_pred CCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcC
Q 001184 896 DSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHS 975 (1130)
Q Consensus 896 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 975 (1130)
||+|++||+.+++++..+.+|...|++++|+|++.+|++++.|++|++||+..++... ..........+.+++|+|
T Consensus 219 Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~----~~~~~~~~~~~~~~~~s~ 294 (354)
T 2pbi_B 219 DKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVA----IYSKESIIFGASSVDFSL 294 (354)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE----EECCTTCCSCEEEEEECT
T ss_pred CCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE----EEcCCCcccceeEEEEeC
Confidence 9999999999999999999999999999999999999999999999999998754321 111222235789999999
Q ss_pred CCcEEEE-EcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEe
Q 001184 976 DQVRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFD 1037 (1130)
Q Consensus 976 d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd 1037 (1130)
++.+|++ +.|+.|++||+.+++.+..+.+| ...|++++|+|||++|++|+.||+|+||+
T Consensus 295 ~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h---~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 295 SGRLLFAGYNDYTINVWDVLKGSRVSILFGH---ENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TSSEEEEEETTSCEEEEETTTCSEEEEECCC---SSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEECCCcEEEEECCCCceEEEEECC---CCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999998 56999999999999988888766 78999999999999999999999999996
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-36 Score=336.90 Aligned_cols=298 Identities=19% Similarity=0.274 Sum_probs=243.6
Q ss_pred eeec-cCCCCEEEEEE-----ec-CCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEE
Q 001184 341 ACTM-HQGSSVVSMDF-----HP-FHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVS 413 (1130)
Q Consensus 341 ~~~~-~h~~~V~~v~f-----sp-dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 413 (1130)
...+ +|.+.|++++| +| +++ +|++|+.|++|+|||+.+++.... .......+.+|...|.
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~------------~~~~~~~l~~h~~~V~ 80 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGY------------FGIPHKALTGHNHFVS 80 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSB------------SEEEEEEECCCSSCEE
T ss_pred eeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCcccc------------cccccchhccCCCceE
Confidence 3344 59999999999 77 887 699999999999999976543210 0012235789999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEe
Q 001184 414 RVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQF 493 (1130)
Q Consensus 414 ~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~ 493 (1130)
+++|+|++.+|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||..+......
T Consensus 81 ~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~~~~~~~~ 155 (343)
T 2xzm_R 81 DLALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNILGECKFSS 155 (343)
T ss_dssp EEEECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESSSCEEEEC
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEeccCCceeee
Confidence 99999999999999999999999999987554 6789999999999999999 899999999999999656665554
Q ss_pred c---CCCcCEEEEeecccCC--------ccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeec
Q 001184 494 E---GHEAPVYSVCPHQKEN--------IHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 494 ~---~h~~~v~~~~~~~~~~--------~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
. +|...|.+++|+|... +.++++++.|+.|++||. .......+..|...|.+++|+|+|++|++++.
T Consensus 156 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~- 233 (343)
T 2xzm_R 156 AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGK- 233 (343)
T ss_dssp CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEET-
T ss_pred ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcC-
Confidence 4 7999999999987542 268999999999999994 45556677888999999999999999999986
Q ss_pred CCCCcEEEEeeCC-CCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeE--EEec---------cC
Q 001184 563 KEGDSHLVEWNES-EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLT--STEA---------EG 630 (1130)
Q Consensus 563 ~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~---------~~ 630 (1130)
++.|++||+. .......+.. ...+.+++|+|++.++++ +.|+.|++||+.+++... .+.. .+
T Consensus 234 ---dg~v~iwd~~~~~~~~~~~~~--~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (343)
T 2xzm_R 234 ---DKKLLIWDILNLTYPQREFDA--GSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKG 307 (343)
T ss_dssp ---TCEEEEEESSCCSSCSEEEEC--SSCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCC
T ss_pred ---CCeEEEEECCCCcccceeecC--CCcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcC
Confidence 9999999994 4444555532 236999999999987764 567889999998876544 3321 13
Q ss_pred CCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 631 GLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 631 ~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+...+.+++|+|+|++|++|+.||.|++|++.++
T Consensus 308 ~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 308 KNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp SCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 4457899999999999999999999999998765
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=345.40 Aligned_cols=320 Identities=13% Similarity=0.164 Sum_probs=264.0
Q ss_pred EEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEE
Q 001184 568 HLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLL 647 (1130)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l 647 (1130)
.+..|+..+..+.+.+.+|.. .|.+++|+|++++|++|+.||+|++||+.+++....+..+.. .|.+++|+|++++|
T Consensus 47 ~~~~~~~~~~~~~~~l~gH~~-~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~--~v~~~~~s~~g~~l 123 (380)
T 3iz6_a 47 TAVSFNPTDLVCCRTLQGHSG-KVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCP--WVMECAFAPNGQSV 123 (380)
T ss_dssp GCCCCCCCCCEEEEEECCCSS-CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCT--TCCCCEECTTSSEE
T ss_pred cccccccceeEEeeccccccc-EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCC--CEEEEEECCCCCEE
Confidence 345677777888889999876 899999999999999999999999999999999988887654 79999999999999
Q ss_pred EEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccC
Q 001184 648 VVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARG 727 (1130)
Q Consensus 648 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1130)
++++.|+.+++|++...... +
T Consensus 124 as~~~d~~v~iw~~~~~~~~-------------------------------~---------------------------- 144 (380)
T 3iz6_a 124 ACGGLDSACSIFNLSSQADR-------------------------------D---------------------------- 144 (380)
T ss_dssp EECCSSSCCEEEECCCCSSC-------------------------------C----------------------------
T ss_pred EEeeCCCcEEEEECCCCccc-------------------------------c----------------------------
Confidence 99999999999998653100 0
Q ss_pred CCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCccc
Q 001184 728 IEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKA 807 (1130)
Q Consensus 728 ~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 807 (1130)
+...+
T Consensus 145 -----------~~~~~---------------------------------------------------------------- 149 (380)
T 3iz6_a 145 -----------GNMPV---------------------------------------------------------------- 149 (380)
T ss_dssp -----------CSSTT----------------------------------------------------------------
T ss_pred -----------CCccc----------------------------------------------------------------
Confidence 00000
Q ss_pred ccccccccccCCCCcceeccCCCCCCCceeEEEEecCC-CEEEEEe-CCeEEEEECCCceeEEEE-----eCCCCCeEEE
Q 001184 808 TAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND-SYVMSAG-GGKVSLFNMMNFKVMTTF-----MSPPPASTFL 880 (1130)
Q Consensus 808 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg-~~la~~~-dg~i~iwd~~~~~~~~~~-----~~~~~~i~~l 880 (1130)
.....+|...+.+++|+|++ ..|++++ |++|++||+.+++.+..+ .+|...|.++
T Consensus 150 ------------------~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~ 211 (380)
T 3iz6_a 150 ------------------SRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL 211 (380)
T ss_dssp ------------------CCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEE
T ss_pred ------------------eeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEE
Confidence 00112577788888888864 5688887 899999999999998887 5788999999
Q ss_pred EEeCCCCcEEEEEeCCCcEEEEEee-cCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEec
Q 001184 881 AFHPQDNNIIAIGMEDSTIQIYNVR-VDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQL 959 (1130)
Q Consensus 881 ~~sp~~~~~lasg~~dg~v~iwd~~-~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~ 959 (1130)
+|++.++.+|++|+.||+|++||+. .++.+..+.+|.+.|++++|+|++++|++++.|++|++||+.+++.........
T Consensus 212 ~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~ 291 (380)
T 3iz6_a 212 SINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREP 291 (380)
T ss_dssp EECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCC
T ss_pred EeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccc
Confidence 9987678999999999999999998 557888999999999999999999999999999999999999876543322111
Q ss_pred cC-CCCCCCeEEEEEcCCCcEEEEE-cCCcEEEEECCCceeeeeeecC-CCCCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 001184 960 PA-GKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKMECIRQWVPQ-DVLSSPISSAAYSCNSQLIYATFTDGSIGVF 1036 (1130)
Q Consensus 960 ~~-~~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~-~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vw 1036 (1130)
.. ......+.+++|+|+|.+|+++ .|+.|++||+.+++.+..+... .+|...|++++|+|||++|++|+.||+|+||
T Consensus 292 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW 371 (380)
T 3iz6_a 292 DRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371 (380)
T ss_dssp SSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred cccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEE
Confidence 11 1112358899999999999985 6999999999999888776322 3568999999999999999999999999999
Q ss_pred eCCCcc
Q 001184 1037 DADSLR 1042 (1130)
Q Consensus 1037 d~~~~~ 1042 (1130)
++...+
T Consensus 372 ~~~~~~ 377 (380)
T 3iz6_a 372 AFSGHR 377 (380)
T ss_dssp ECCSSS
T ss_pred ecCCCc
Confidence 998664
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-36 Score=350.36 Aligned_cols=304 Identities=15% Similarity=0.234 Sum_probs=247.4
Q ss_pred eeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeC----CCCceeecccceeeeccccccceeeeeecCCCccEEEEE
Q 001184 341 ACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDV----GLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVA 416 (1130)
Q Consensus 341 ~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 416 (1130)
+....|.+.|++++|+|+|+.+||+|+.||.|+|||+ .+++.+..... ...+.. .........+|.+.|++++
T Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~v~~~~ 115 (425)
T 1r5m_A 39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTI-IAELRH--PFALSASSGKTTNQVTCLA 115 (425)
T ss_dssp CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEE-EEEEEC--CCCCC------CBCEEEEE
T ss_pred eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccc-cccccc--cccccccccCCCCceEEEE
Confidence 3334578999999999999845899999999999999 88773110000 000000 0000001234788999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecC
Q 001184 417 WSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEG 495 (1130)
Q Consensus 417 ~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~ 495 (1130)
|+|++++|++|+.||.|++|| .+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++|| .+++.+..+..
T Consensus 116 ~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~ 189 (425)
T 1r5m_A 116 WSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVMQHFEL 189 (425)
T ss_dssp ECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred EcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEEEeec
Confidence 999999999999999999999 4444333 5788999999999999999 899999999999999 78888888888
Q ss_pred CCcC---------------EEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEee
Q 001184 496 HEAP---------------VYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCG 560 (1130)
Q Consensus 496 h~~~---------------v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1130)
+... +.+++|++. ..+++++.||.|++||++.......+..+...|.+++|+|++++|++++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 266 (425)
T 1r5m_A 190 KETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSAS 266 (425)
T ss_dssp C---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred cccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEc
Confidence 8777 888988764 4689999999999999999888888888999999999999999999998
Q ss_pred ecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEE
Q 001184 561 TSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRF 640 (1130)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~ 640 (1130)
. ++.|++||+.+++.+..+.+|.. .+.+++|+|++ ++++++.|+.|++||+.+++.+..+..+.. .+.+++|
T Consensus 267 ~----d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~ 338 (425)
T 1r5m_A 267 D----DGTLRIWHGGNGNSQNCFYGHSQ-SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV--PIFAGRI 338 (425)
T ss_dssp T----TSCEEEECSSSBSCSEEECCCSS-CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC--CEEEEEE
T ss_pred C----CCEEEEEECCCCccceEecCCCc-cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc--cEEEEEE
Confidence 6 89999999999999999987665 89999999999 999999999999999999999888876554 7999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 641 NKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 641 s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+|++++|++++.||.|++|++.++
T Consensus 339 s~~~~~l~~~~~dg~i~i~~~~~~ 362 (425)
T 1r5m_A 339 SQDGQKYAVAFMDGQVNVYDLKKL 362 (425)
T ss_dssp CTTSSEEEEEETTSCEEEEECHHH
T ss_pred cCCCCEEEEEECCCeEEEEECCCC
Confidence 999999999999999999998765
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-36 Score=344.05 Aligned_cols=308 Identities=18% Similarity=0.284 Sum_probs=248.1
Q ss_pred ceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEc
Q 001184 339 AVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1130)
Q Consensus 339 ~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 418 (1130)
++.+.++|...|+|++|||||+ +||+|+ ++.++||++.+++.+.......-. ..............+...|.+++|+
T Consensus 56 ~~~~~~~h~~~V~~v~fspdg~-~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~v~~v~~s 132 (393)
T 1erj_A 56 ELHKSLDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAA-NKDPENLNTSSSPSSDLYIRSVCFS 132 (393)
T ss_dssp EEEEEEECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEEC
T ss_pred eeEEecCCCCEEEEEEECCCCC-EEEEEc-CCcEEEEEecCCCEEEEecCcccc-ccccccccccccCCCceeEEEEEEC
Confidence 3455668999999999999998 588876 789999999998876421100000 0000000001112344569999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCC
Q 001184 419 PDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHE 497 (1130)
Q Consensus 419 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~ 497 (1130)
|||++||+|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++|| .++++...+. +.
T Consensus 133 ~dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~ 206 (393)
T 1erj_A 133 PDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IE 206 (393)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CS
T ss_pred CCCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cC
Confidence 999999999999999999999876544 6789999999999999999 899999999999999 7777777775 66
Q ss_pred cCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeee-------cCCCccEEEEEEecCCCeEEEeeecCCCCcEEE
Q 001184 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY-------DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLV 570 (1130)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1130)
..+.+++|++ .++.+|++++.|+.|++||++++.....+ ..|...|.+++|+|+|++|++++. ++.|+
T Consensus 207 ~~v~~~~~~~-~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v~ 281 (393)
T 1erj_A 207 DGVTTVAVSP-GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVK 281 (393)
T ss_dssp SCEEEEEECS-TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEE
T ss_pred CCcEEEEEEC-CCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEEE
Confidence 7899999976 35689999999999999999987766555 467789999999999999999986 99999
Q ss_pred EeeCCCC------------ceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceE
Q 001184 571 EWNESEG------------ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1130)
Q Consensus 571 ~wd~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v 638 (1130)
+||+.+. .+...+.+|.. .+.+++|+|++.+|++|+.|+.|++||..+++.+..+..|.. .|.++
T Consensus 282 ~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~--~v~~v 358 (393)
T 1erj_A 282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVISV 358 (393)
T ss_dssp EEEC---------------CEEEEEECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEE
T ss_pred EEECCCCCCcccccCCCCCcceEEEecccC-cEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC--CEEEE
Confidence 9998753 34556777765 799999999999999999999999999999999988886654 79999
Q ss_pred EEcC------CCCEEEEEeCCCcEEEEEcCC
Q 001184 639 RFNK------EGNLLVVTTADQGIKILANAD 663 (1130)
Q Consensus 639 ~~s~------~~~~l~~~~~dg~i~iw~~~~ 663 (1130)
+|++ ++++|++|+.||.|++|++..
T Consensus 359 ~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 359 AVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 9876 688999999999999999754
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-36 Score=329.56 Aligned_cols=248 Identities=18% Similarity=0.302 Sum_probs=224.4
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
++.+|.+.|.+++|+||+++||+|+.||+|++||+.++..+. .+.+|..+|.+++|+|+++ +|++|+.|++|++|
T Consensus 8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVF 82 (304)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEEE
Confidence 588999999999999999999999999999999999987554 6788999999999999999 89999999999999
Q ss_pred e-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcc-eeeecCCCccEEEEEEec-CCCeEEEee
Q 001184 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS-RVDYDAPGLWCTTMLYSA-DGSRLFSCG 560 (1130)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~-~~~~l~~~~ 560 (1130)
| .+++.+..+.+|...|.+++|+| ++.+|++++.|++|++||+++... ...+..|...|.+++|+| ++.+|++++
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs 160 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcC--CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence 9 88999999999999999999976 457999999999999999987744 456788999999999999 678999998
Q ss_pred ecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceE
Q 001184 561 TSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT--TRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1130)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v 638 (1130)
. |+.|++||+.++.....+..++...+..+.|+| +++++++|+.|+.|++||+.+++++..+..|.. .|.++
T Consensus 161 ~----D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~--~v~~~ 234 (304)
T 2ynn_A 161 L----DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSFA 234 (304)
T ss_dssp T----TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS--CEEEE
T ss_pred C----CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC--CEEEE
Confidence 6 999999999988887777766655788888876 678999999999999999999999999887654 79999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 639 RFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 639 ~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+|+|++.+|++++.||.|++||..++
T Consensus 235 ~~~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 235 VFHPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTC
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCC
Confidence 99999999999999999999998765
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-36 Score=332.79 Aligned_cols=294 Identities=15% Similarity=0.214 Sum_probs=230.4
Q ss_pred eeeec-cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeee-cC-CCccEEEEE
Q 001184 340 VACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIV-KD-SSISVSRVA 416 (1130)
Q Consensus 340 ~~~~~-~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~V~~v~ 416 (1130)
++..+ +|.+.|++++|+|+ +||+|+.|++|+|||+.++..... ..+ .+ |...|.+++
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~-----------------~~~~~~~h~~~v~~v~ 65 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLI-----------------DVLDETAHKKAIRSVA 65 (330)
T ss_dssp EEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEE-----------------EEECTTCCCSCEEEEE
T ss_pred cceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEE-----------------EEEecCCccCCEEEEE
Confidence 33444 59999999999997 599999999999999987532110 023 34 999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEecCCc----cceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEec-CC----
Q 001184 417 WSPDGNFIGVAFTKHLIHLYTYQGSN----DLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL-SG---- 487 (1130)
Q Consensus 417 ~spdg~~las~~~d~~i~vwd~~~~~----~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~-~~---- 487 (1130)
|+|++++||+|+.|++|++||+.... .......+.+|.+.|.+++|+|+++ +|++|+.|++|++||. .+
T Consensus 66 ~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~~ 143 (330)
T 2hes_X 66 WRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEEY 143 (330)
T ss_dssp ECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCCC
T ss_pred ECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCCe
Confidence 99999999999999999999996432 1233446789999999999999999 8999999999999994 32
Q ss_pred CeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCC--cceeeecCCCccEEEEEEecC--CCeEEEeeecC
Q 001184 488 RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV--GSRVDYDAPGLWCTTMLYSAD--GSRLFSCGTSK 563 (1130)
Q Consensus 488 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~~~ 563 (1130)
+++..+.+|...|.+++|+| ++.+|++++.|++|++||.... .....+..|...|.+++|+|+ +.+|++++.
T Consensus 144 ~~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-- 219 (330)
T 2hes_X 144 ECISVLQEHSQDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD-- 219 (330)
T ss_dssp EEEEEECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET--
T ss_pred EEEEEeccCCCceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC--
Confidence 35678899999999999976 4579999999999999998766 456678889999999999998 678999886
Q ss_pred CCCcEEEEeeCCCC--------ceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce--eEEEeccCCCC
Q 001184 564 EGDSHLVEWNESEG--------ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNM--LTSTEAEGGLP 633 (1130)
Q Consensus 564 ~~~~~i~~wd~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~ 633 (1130)
|+.|++||+.++ .....+.+.+...|.+++|++++ +|++++.||.|++||..+++. .... ...+..
T Consensus 220 --D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~h~~ 295 (330)
T 2hes_X 220 --DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-ALCHGV 295 (330)
T ss_dssp --TSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-SCTTTT
T ss_pred --CCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-cccccc
Confidence 899999998754 33444555344589999999654 899999999999999987743 2222 223333
Q ss_pred -CcceEEEcC--CCCEEEEEeCCCcEEEEEcCC
Q 001184 634 -SLPRLRFNK--EGNLLVVTTADQGIKILANAD 663 (1130)
Q Consensus 634 -~i~~v~~s~--~~~~l~~~~~dg~i~iw~~~~ 663 (1130)
.|.+++|+| ++++|++++.||.|++|++..
T Consensus 296 ~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 296 YEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp SCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 789999999 789999999999999999864
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=372.35 Aligned_cols=519 Identities=12% Similarity=0.073 Sum_probs=379.0
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
+...+.+.+|||+ + ||..+. +.|++|++.+++... +.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~--~-iaf~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD--R-IIFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT--E-EEEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC--E-EEEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 5568899999964 4 555554 689999999887542 668999999999999999999
Q ss_pred EEeCC------CeEEEEEecCCccceeeeeeecCCCCe-------eEEEEecCCCceEEEEEcCC------CcEEEEecC
Q 001184 426 VAFTK------HLIHLYTYQGSNDLCQSLEIDAHVGGV-------NDLAFSYPNKQLCIVTCGDD------KLIRVWDLS 486 (1130)
Q Consensus 426 s~~~d------~~i~vwd~~~~~~~~~~~~~~~h~~~V-------~~i~~s~d~~~l~l~s~s~d------~~v~iwd~~ 486 (1130)
+++.+ ..|++||+.+++. ..+..|...+ .+++|+|||+ ++++++.+ ..|.+||..
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~~----~~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGEI----KRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTEE----EECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCCe----EEcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88653 3799999988752 2477888888 9999999998 67777754 357778855
Q ss_pred CCeeeEecCCCcCEEEEeecccCCccEEEEEec------------CCcEEEEEccCCcceeeecCCCccEEEEEEecCCC
Q 001184 487 GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV------------DGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGS 554 (1130)
Q Consensus 487 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~------------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 554 (1130)
+.....+..+. ...++|++ | ++++++. +...++|..........+..+...+.++.|+++ .
T Consensus 143 ~g~~~~l~~~~--~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~ 215 (1045)
T 1k32_A 143 GINFVPLNLGP--ATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-R 215 (1045)
T ss_dssp GTEEEECCSCS--CSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-E
T ss_pred CCCeEEecCCC--cceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-E
Confidence 55555555443 34566765 5 7777753 345677765444555566788889999999988 4
Q ss_pred eEEEeeecCCCCcEEEEeeCCC-CceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccC---
Q 001184 555 RLFSCGTSKEGDSHLVEWNESE-GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEG--- 630 (1130)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--- 630 (1130)
.++++.. ++.+.+|.... +.....+..+. .+...+|+|+|++++.+. ++.|++|++..... ..+..+.
T Consensus 216 l~~~~~~----dg~~~l~~~~~~g~~~~~l~~~~--~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~l-~~l~~~~~~~ 287 (1045)
T 1k32_A 216 IYFITDI----DGFGQIYSTDLDGKDLRKHTSFT--DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKI-EKIEIGDLES 287 (1045)
T ss_dssp EEEEECT----TSSCEEEEEETTSCSCEECCCCC--SSCEEEEEESSSCEEEEE-TTEEEEECTTTCCE-EECCCCCCCB
T ss_pred EEEEEec----cCceEEEEEeCCCCcceEecCCC--CcceeeEcCCCCEEEEEe-CCEEEEecCCceEe-eeeccCcccc
Confidence 4444432 45556665432 33445555443 355679999999888874 89999999954433 3443321
Q ss_pred ------CCCCcceEEEc-CCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccc
Q 001184 631 ------GLPSLPRLRFN-KEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKA 703 (1130)
Q Consensus 631 ------~~~~i~~v~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 703 (1130)
+...+..++|+ |||+.|++++ ++.+.+|+...+.. .. +
T Consensus 288 ~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~-~~-~-------------------------------- 332 (1045)
T 1k32_A 288 PEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYV-LK-V-------------------------------- 332 (1045)
T ss_dssp CCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBE-EE-C--------------------------------
T ss_pred cccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCce-EE-c--------------------------------
Confidence 11258899999 9999999887 78899998765410 00 0
Q ss_pred cccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCcc-ceEEEEEeccCCeE
Q 001184 704 ERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSAS-KVARLLYTNSGIGI 782 (1130)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~s~~g~~l 782 (1130)
..+.. .+..++|+ +|+.+
T Consensus 333 ------------------------------------------------------------~~~~~~~~~~~~~s-dg~~l 351 (1045)
T 1k32_A 333 ------------------------------------------------------------PEPLRIRYVRRGGD-TKVAF 351 (1045)
T ss_dssp ------------------------------------------------------------SCCSCEEEEEECSS-SEEEE
T ss_pred ------------------------------------------------------------cCCCcceEEeeeEc-CCCeE
Confidence 01333 67788999 99999
Q ss_pred EEeeeCCeEE-eeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEE
Q 001184 783 LALWSNGVQK-LWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFN 860 (1130)
Q Consensus 783 ~~~~~dg~i~-iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd 860 (1130)
+.++.++.+. +|++.. +.... +. ++...+..++|||||++|++++ ++.|++||
T Consensus 352 ~~~s~~~~l~~~~d~~~----------------------~~~~~--l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d 406 (1045)
T 1k32_A 352 IHGTREGDFLGIYDYRT----------------------GKAEK--FE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVD 406 (1045)
T ss_dssp EEEETTEEEEEEEETTT----------------------CCEEE--CC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEEECCCceEEEEECCC----------------------CCceE--ec-CCccceeeeEECCCCCEEEEECCCCeEEEEE
Confidence 9888766666 665432 22221 22 4677899999999999999988 78999999
Q ss_pred CCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCC----------cEEEEEeecCeEEEEEecCCCCeeEEEEccCCC
Q 001184 861 MMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS----------TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLN 930 (1130)
Q Consensus 861 ~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg----------~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~ 930 (1130)
+.+++....+..|...+.+++|+| |+++|++++.++ .|++||+.+++ +..+..|...+.+++|+|||+
T Consensus 407 ~~tg~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~ 484 (1045)
T 1k32_A 407 LETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSK 484 (1045)
T ss_dssp TTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSC
T ss_pred CCCCceEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCC
Confidence 999998888878889999999999 888888877644 89999999988 677888989999999999999
Q ss_pred eEEEEeCCCcEEEEECCCCcccce---------------------------------------eeEeccCCCCCCCeEEE
Q 001184 931 ILVSSGSDAQLIFWNTDTWEKRKS---------------------------------------IAIQLPAGKLPVGETRV 971 (1130)
Q Consensus 931 ~L~s~s~Dg~i~vwd~~~~~~~~~---------------------------------------~~~~~~~~~~~~~v~~~ 971 (1130)
+|++++.++...+|+......... ...... .+...+..+
T Consensus 485 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~--~~~~~~~~~ 562 (1045)
T 1k32_A 485 NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPIN--VDPGDYRMI 562 (1045)
T ss_dssp EEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECS--CCCBCEEEE
T ss_pred EEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcC--CCCCChhhe
Confidence 999999988888887543221000 000000 122567899
Q ss_pred EEcCCCcEEEE--------------EcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEe
Q 001184 972 QFHSDQVRLLV--------------NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFD 1037 (1130)
Q Consensus 972 ~~s~d~~~l~~--------------~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd 1037 (1130)
+++|||.++++ .....+.+||+.+++..... ..+.+++|||||++|++++.| .|++||
T Consensus 563 ~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-------~~v~~~~~S~DG~~l~~~~~~-~i~~~d 634 (1045)
T 1k32_A 563 IPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK-------NNLTDLRLSADRKTVMVRKDD-GKIYTF 634 (1045)
T ss_dssp EECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE-------EEEEEEEECTTSCEEEEEETT-SCEEEE
T ss_pred EEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee-------cCcceEEECCCCCEEEEEcCC-cEEEEe
Confidence 99999997774 12457889999888754332 368899999999999999866 899999
Q ss_pred CCCcc
Q 001184 1038 ADSLR 1042 (1130)
Q Consensus 1038 ~~~~~ 1042 (1130)
+.+++
T Consensus 635 ~~~~~ 639 (1045)
T 1k32_A 635 PLEKP 639 (1045)
T ss_dssp ESSCT
T ss_pred CccCc
Confidence 98887
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=332.41 Aligned_cols=301 Identities=22% Similarity=0.287 Sum_probs=256.3
Q ss_pred ceeeec-cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEE
Q 001184 339 AVACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1130)
Q Consensus 339 ~~~~~~-~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 417 (1130)
.+..+| +|.+.|++|+|+|++..+||||+.||+|+|||+.+++.... .+...+.+|...|.+++|
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~--------------~~~~~l~~h~~~V~~~~~ 94 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG--------------IPQRALRGHSHFVSDVVI 94 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE--------------EEEEEECCCSSCEEEEEE
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc--------------eeeEEEeCCCCCEEEEEE
Confidence 344455 59999999999998544799999999999999987654321 122257899999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCC--eeeEecC
Q 001184 418 SPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGR--KLFQFEG 495 (1130)
Q Consensus 418 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~--~~~~~~~ 495 (1130)
+|||++|++++.|+.|++|+...+.... ....+...+..+.+++++. .+++++.|+.+++||..+. ....+.+
T Consensus 95 s~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~ 169 (340)
T 4aow_A 95 SSDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDES 169 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSS
T ss_pred CCCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEecc
Confidence 9999999999999999999998876443 4567888899999999999 7999999999999994333 3345668
Q ss_pred CCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC
Q 001184 496 HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1130)
Q Consensus 496 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1130)
|...+..++|.+.....++++++.|+.|++||+++......+..|...|.+++|+|++++|++++. |+.|++||+.
T Consensus 170 ~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iwd~~ 245 (340)
T 4aow_A 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAMLWDLN 245 (340)
T ss_dssp CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEEEETT
T ss_pred ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEEec
Confidence 999999999998887789999999999999999999999899999999999999999999999986 8999999999
Q ss_pred CCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEec-------cCCCCCcceEEEcCCCCEEE
Q 001184 576 EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA-------EGGLPSLPRLRFNKEGNLLV 648 (1130)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------~~~~~~i~~v~~s~~~~~l~ 648 (1130)
+++.+..+..+. .+.+++|+|++. +++++.|+.|++||++++..+..+.. ..+...|.+++|+|++++|+
T Consensus 246 ~~~~~~~~~~~~--~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 322 (340)
T 4aow_A 246 EGKHLYTLDGGD--IINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 322 (340)
T ss_dssp TTEEEEEEECSS--CEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEE
T ss_pred cCceeeeecCCc--eEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEE
Confidence 999998888643 689999999875 55667799999999999887766543 24556899999999999999
Q ss_pred EEeCCCcEEEEEcCCCc
Q 001184 649 VTTADQGIKILANADGL 665 (1130)
Q Consensus 649 ~~~~dg~i~iw~~~~~~ 665 (1130)
+|+.||.|+||++.+|.
T Consensus 323 sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 323 AGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEETTSCEEEEEEEC--
T ss_pred EEeCCCEEEEEeCCCcC
Confidence 99999999999998873
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-35 Score=328.13 Aligned_cols=312 Identities=14% Similarity=0.193 Sum_probs=244.7
Q ss_pred ceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEE-eccCCCCCcceEEEcCCCCEEEEEeCCCcE
Q 001184 578 ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTST-EAEGGLPSLPRLRFNKEGNLLVVTTADQGI 656 (1130)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i 656 (1130)
+++..+.+|....+.+++|+|++++|++|+.|+.|++||+.++...... ...++...|.+++|+|++++|++++.|+.+
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v 85 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT 85 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence 4567788887768999999999999999999999999999888654332 224556689999999999999999999999
Q ss_pred EEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccc
Q 001184 657 KILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLED 736 (1130)
Q Consensus 657 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1130)
++|+...+...
T Consensus 86 ~iw~~~~~~~~--------------------------------------------------------------------- 96 (345)
T 3fm0_A 86 CIWKKNQDDFE--------------------------------------------------------------------- 96 (345)
T ss_dssp EEEEECCC-EE---------------------------------------------------------------------
T ss_pred EEEEccCCCeE---------------------------------------------------------------------
Confidence 99997543000
Q ss_pred cCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccc
Q 001184 737 ISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHW 816 (1130)
Q Consensus 737 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w 816 (1130)
.+..
T Consensus 97 -----------------------------------------------------~~~~----------------------- 100 (345)
T 3fm0_A 97 -----------------------------------------------------CVTT----------------------- 100 (345)
T ss_dssp -----------------------------------------------------EEEE-----------------------
T ss_pred -----------------------------------------------------EEEE-----------------------
Confidence 0000
Q ss_pred cCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCc---eeEEEEeCCCCCeEEEEEeCCCCcEEEE
Q 001184 817 QPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNF---KVMTTFMSPPPASTFLAFHPQDNNIIAI 892 (1130)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~---~~~~~~~~~~~~i~~l~~sp~~~~~las 892 (1130)
..+|...|.+++|+|++++|++++ |++|++||+.++ +++..+.+|...|.+++|+| ++.+|++
T Consensus 101 ------------~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s 167 (345)
T 3fm0_A 101 ------------LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLAS 167 (345)
T ss_dssp ------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-SSSCEEE
T ss_pred ------------ccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-CCCEEEE
Confidence 014778889999999999999888 889999998765 45667888999999999999 8899999
Q ss_pred EeCCCcEEEEEeecCe--EEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccc----------eeeEecc
Q 001184 893 GMEDSTIQIYNVRVDE--VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRK----------SIAIQLP 960 (1130)
Q Consensus 893 g~~dg~v~iwd~~~~~--~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~----------~~~~~~~ 960 (1130)
|+.|++|++||..+++ +...+.+|...|++++|+|+|++|++++.|++|++|+........ .......
T Consensus 168 ~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T 3fm0_A 168 ASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTL 247 (345)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEE
T ss_pred EeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEe
Confidence 9999999999999875 457889999999999999999999999999999999974322111 1112223
Q ss_pred CCCCCCCeEEEEEcCCCcEEEE-EcCCcEEEEECCCceee----e--eeecCCCCCCCeEEEEECCCCC-EEEEEeCCCc
Q 001184 961 AGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGSKMECI----R--QWVPQDVLSSPISSAAYSCNSQ-LIYATFTDGS 1032 (1130)
Q Consensus 961 ~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~----~--~~~~~~~~~~~v~~v~~s~dg~-~l~t~~~Dg~ 1032 (1130)
.+.+...+.+++|+|++..|++ +.|+.+++|+...+... . ....+.+|...|++++|+|++. +||+|+.||+
T Consensus 248 ~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~ 327 (345)
T 3fm0_A 248 SGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGE 327 (345)
T ss_dssp CSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred cCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCc
Confidence 3335578999999999999888 67999999998754311 1 1122345689999999999984 9999999999
Q ss_pred EEEEeCCCccccccc
Q 001184 1033 IGVFDADSLRLRCRI 1047 (1130)
Q Consensus 1033 i~vwd~~~~~~~~~~ 1047 (1130)
|++|++.+++.....
T Consensus 328 v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 328 VAFWKYQRPEGLHHH 342 (345)
T ss_dssp EEEEEECC-------
T ss_pred EEEEEecCCCCcccc
Confidence 999999988765443
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=326.78 Aligned_cols=247 Identities=20% Similarity=0.329 Sum_probs=218.6
Q ss_pred eecCCCccEEEEEEcCCC-CEEEEEeCCCeEEEEEecCCcc--ceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcE
Q 001184 404 IVKDSSISVSRVAWSPDG-NFIGVAFTKHLIHLYTYQGSND--LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg-~~las~~~d~~i~vwd~~~~~~--~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v 480 (1130)
.+.+|.+.|.+++|+|++ ++|++|+.|++|++||+.+... ......+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v 89 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTL 89 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEE
Confidence 688999999999999965 8999999999999999975432 123446889999999999999999 89999999999
Q ss_pred EEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecC------C
Q 001184 481 RVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSAD------G 553 (1130)
Q Consensus 481 ~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~------~ 553 (1130)
++|| .+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||++. .....+..|...+.++.|.|. +
T Consensus 90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 90 RLWDVATGETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC------C
T ss_pred EEEECCCCCeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence 9999 88999999999999999999965 557999999999999999964 566677888899999999985 4
Q ss_pred CeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCC
Q 001184 554 SRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLP 633 (1130)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 633 (1130)
..+++++. ++.|++||+.+++....+.+|.. .+.+++|+|++++|++++.||.|++||+.+++.+..+..+.
T Consensus 167 ~~l~s~~~----d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--- 238 (319)
T 3frx_A 167 VTIISAGN----DKMVKAWNLNQFQIEADFIGHNS-NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD--- 238 (319)
T ss_dssp CEEEEEET----TSCEEEEETTTTEEEEEECCCCS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCS---
T ss_pred cEEEEEeC----CCEEEEEECCcchhheeecCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC---
Confidence 47888886 89999999999999999998766 89999999999999999999999999999999988887543
Q ss_pred CcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 634 SLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 634 ~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
.+.+++|+|++.++++++.+ .+++|++...
T Consensus 239 ~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~ 268 (319)
T 3frx_A 239 EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQ 268 (319)
T ss_dssp CEEEEEECSSSSEEEEEETT-EEEEEEETTE
T ss_pred cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcC
Confidence 69999999999999988765 5999998754
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-37 Score=354.97 Aligned_cols=293 Identities=16% Similarity=0.270 Sum_probs=246.9
Q ss_pred cCCCCEEEEEEecCCCeEEEEE----------eCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVG----------CGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSR 414 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 414 (1130)
.+...|.+++|+|+|+.+|++| +.|+.|+|||+.+++.... + ....|...|.+
T Consensus 10 ~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~--~---------------~~~~~~~~v~~ 72 (416)
T 2pm9_A 10 AEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP--I---------------ASLQVDSKFND 72 (416)
T ss_dssp CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC--S---------------CCCCCSSCEEE
T ss_pred hhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE--E---------------EEEecCCceEE
Confidence 3456889999999998679999 8899999999998763310 0 12368899999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEecCCcc-ceeeeeeecCCCCeeEEEEecC-CCceEEEEEcCCCcEEEEe-cCCC---
Q 001184 415 VAWSPDGNFIGVAFTKHLIHLYTYQGSND-LCQSLEIDAHVGGVNDLAFSYP-NKQLCIVTCGDDKLIRVWD-LSGR--- 488 (1130)
Q Consensus 415 v~~spdg~~las~~~d~~i~vwd~~~~~~-~~~~~~~~~h~~~V~~i~~s~d-~~~l~l~s~s~d~~v~iwd-~~~~--- 488 (1130)
++|+|++++||+|+.||.|++||+.+... ......+.+|...|.+++|+|+ ++ +|++++.|+.|++|| .+++
T Consensus 73 ~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~ 150 (416)
T 2pm9_A 73 LDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESP 150 (416)
T ss_dssp EEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCT
T ss_pred EEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCcccc
Confidence 99999999999999999999999987211 1133467899999999999998 66 799999999999999 5555
Q ss_pred ---eee---EecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCC------CccEEEEEEecCC-Ce
Q 001184 489 ---KLF---QFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP------GLWCTTMLYSADG-SR 555 (1130)
Q Consensus 489 ---~~~---~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------~~~v~~~~~s~~~-~~ 555 (1130)
... .+.+|...|.+++|++.. +.+|++++.|+.|++||+++.+....+..+ ...+.+++|+|++ .+
T Consensus 151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 229 (416)
T 2pm9_A 151 SNYTPLTPGQSMSSVDEVISLAWNQSL-AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTR 229 (416)
T ss_dssp TTCCCBCCCCSCCSSCCCCEEEECSSC-TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTE
T ss_pred ccccccccccccCCCCCeeEEEeCCCC-CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCE
Confidence 332 346799999999997642 479999999999999999998888877776 6789999999998 57
Q ss_pred EEEeeecCCCCc---EEEEeeCCCC-ceeEEEe-cccCceeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeEEEecc
Q 001184 556 LFSCGTSKEGDS---HLVEWNESEG-ALKRTYI-GFRKKSAGVVQFDT-TRNRILAAGEDNQIKFWDMDNVNMLTSTEAE 629 (1130)
Q Consensus 556 l~~~~~~~~~~~---~i~~wd~~~~-~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 629 (1130)
+++++. ++ .|++||++++ ..+..+. +|.. .+.+++|+| ++++|++++.||.|++||+.+++.+..+..+
T Consensus 230 l~~~~~----d~~~~~i~~~d~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~ 304 (416)
T 2pm9_A 230 VATATG----SDNDPSILIWDLRNANTPLQTLNQGHQK-GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR 304 (416)
T ss_dssp EEEEEC----CSSSCCCCEEETTSTTSCSBCCCSCCSS-CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS
T ss_pred EEEEEC----CCCCceEEEEeCCCCCCCcEEeecCccC-ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC
Confidence 777764 55 9999999986 5667776 6655 899999999 8999999999999999999999999988876
Q ss_pred CCCCCcceEEEcCCC-CEEEEEeCCCcEEEEEcCCC
Q 001184 630 GGLPSLPRLRFNKEG-NLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 630 ~~~~~i~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~ 664 (1130)
.. .|.+++|+|++ .+|++++.|+.|++|++.+.
T Consensus 305 ~~--~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 305 GN--WCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp SS--CCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred CC--ceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 54 79999999998 89999999999999999876
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=319.18 Aligned_cols=250 Identities=23% Similarity=0.347 Sum_probs=224.7
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
.+.+|...|.+++|+|+|++||+|+.||.|++|++.+++... .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vw 92 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIW 92 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEE
Confidence 578999999999999999999999999999999999887544 5789999999999999999 89999999999999
Q ss_pred e-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeec
Q 001184 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
| .+++++..+.+|...|.+++|++ ++.+|++++.|+.|++||+++.+....+..|..+|.+++|+|+++++++++.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 169 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY- 169 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC-
Confidence 9 88999999999999999999976 4579999999999999999999888889999999999999999999999986
Q ss_pred CCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEc-
Q 001184 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN- 641 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s- 641 (1130)
++.|++||+.+++.+..+.......+..++|+|+++++++++.||.|++||+.+++.+..+..+..........++
T Consensus 170 ---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (312)
T 4ery_A 170 ---DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 246 (312)
T ss_dssp ---TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEEC
T ss_pred ---CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEe
Confidence 8999999999999888887666668999999999999999999999999999999998888776543333334444
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCC
Q 001184 642 KEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 642 ~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+++.+|++|+.||.|++||+.++
T Consensus 247 ~~~~~l~sg~~dg~i~vwd~~~~ 269 (312)
T 4ery_A 247 TGGKWIVSGSEDNLVYIWNLQTK 269 (312)
T ss_dssp SSSCEEEECCTTSCEEEEETTTC
T ss_pred CCCcEEEEECCCCEEEEEECCCc
Confidence 67899999999999999998765
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-35 Score=327.76 Aligned_cols=285 Identities=13% Similarity=0.155 Sum_probs=242.4
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
|...|.+++|+|||+ +++++..++.+.+|+........ ...+|...|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQ-MQPVPFPPDALIGPGIPRHARQI-------------------NTLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSC-EEECCCCTTSSSSTTCCSEEEEE-------------------EEECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCC-EEEeecCCCcEeccccCCccccc-------------------eeccCCCceEEEEEecCCcEEE
Confidence 567899999999998 47777766666666544332221 2348999999999999999999
Q ss_pred EEeCCCeEEEEEecCCccceeeeeee--cCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCC--eeeEecCCCcCE
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEID--AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGR--KLFQFEGHEAPV 500 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~--~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~--~~~~~~~h~~~v 500 (1130)
+++ ||.|++||+.++........+. +|...|.+++|+|+++ ++++++.|+.|++|| .+++ ....+.+|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 999 9999999999876554444444 7999999999999999 899999999999999 5555 567788999999
Q ss_pred EEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCcee
Q 001184 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK 580 (1130)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1130)
.+++|++ ++.++++++.||.|++||+++.+....+..+...+.+++|+|+++++++++. ++.|++||+++++.+
T Consensus 145 ~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 145 YALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQL 218 (337)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEE
T ss_pred EEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCceE
Confidence 9999976 5589999999999999999998888888889999999999999999999986 899999999999888
Q ss_pred EEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001184 581 RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1130)
Q Consensus 581 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~ 660 (1130)
..+.. ...+.+++|+|+++++++++.|+.|++||+.+++... +. .+...+.+++|+|++++|++++.||.|++|+
T Consensus 219 ~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 219 QQHDF--TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EEEEC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-EC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeecC--CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-Ec--CCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 87753 3478999999999999999999999999999887643 33 3444899999999999999999999999999
Q ss_pred cCCC
Q 001184 661 NADG 664 (1130)
Q Consensus 661 ~~~~ 664 (1130)
+.++
T Consensus 294 ~~~~ 297 (337)
T 1gxr_A 294 TPYG 297 (337)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 8765
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-34 Score=320.80 Aligned_cols=315 Identities=13% Similarity=0.162 Sum_probs=263.6
Q ss_pred CcccccccCCCCCcccccCC---------cccceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecc
Q 001184 316 SVDEATYPVPSQQATWSLDD---------LPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSK 386 (1130)
Q Consensus 316 ~~~~~~~s~~~~~~~~~~~~---------~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~ 386 (1130)
.+..++++|+|+.++..... ........++|...|++++|+|+++ +|++++ ||.|+|||+.+++....
T Consensus 11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~-dg~i~iw~~~~~~~~~~- 87 (337)
T 1gxr_A 11 PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKSP- 87 (337)
T ss_dssp ECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCSC-
T ss_pred ceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCc-EEEEcC-CCeEEEEECCCCCceee-
Confidence 45668899999865443321 2334555668999999999999998 588888 99999999998764431
Q ss_pred cceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCC
Q 001184 387 PFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPN 466 (1130)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~ 466 (1130)
+. .....+|...|.+++|+|++++|++++.|+.|++||+.+++. .....+.+|...|.+++|+|++
T Consensus 88 -~~------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~i~~~~~~~~~ 153 (337)
T 1gxr_A 88 -VS------------QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDS 153 (337)
T ss_dssp -SE------------EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC---EEEEEEECSSSCEEEEEECTTS
T ss_pred -ee------------cccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc-ceeeecccCCCceEEEEECCCC
Confidence 11 001237899999999999999999999999999999998763 2334678899999999999999
Q ss_pred CceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEE
Q 001184 467 KQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCT 545 (1130)
Q Consensus 467 ~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~ 545 (1130)
+ ++++++.|+.|++|| .+++.+..+.+|...|.+++|++ ++.+|++++.||.|++||+++.+....+. +...+.
T Consensus 154 ~--~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~ 228 (337)
T 1gxr_A 154 K--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN--DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIF 228 (337)
T ss_dssp S--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEE
T ss_pred C--EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECC--CCCEEEEEecCCcEEEEECCCCceEeeec-CCCceE
Confidence 9 899999999999999 78888999999999999999976 55899999999999999999887776654 556799
Q ss_pred EEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEE
Q 001184 546 TMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTS 625 (1130)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 625 (1130)
+++|+|+++++++++. ++.|++||+.+++.. .+..|.. .+.+++|+|+++++++++.||.|++||+.+++.+..
T Consensus 229 ~~~~s~~~~~l~~~~~----~~~i~~~~~~~~~~~-~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~ 302 (337)
T 1gxr_A 229 SLGYCPTGEWLAVGME----SSNVEVLHVNKPDKY-QLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ 302 (337)
T ss_dssp EEEECTTSSEEEEEET----TSCEEEEETTSSCEE-EECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEEECCCCCEEEEEcC----CCcEEEEECCCCCeE-EEcCCcc-ceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE
Confidence 9999999999999986 889999999988754 4555544 899999999999999999999999999999988755
Q ss_pred EeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 626 TEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 626 ~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
... ...+.+++|+|++++|++++.||.|++|++
T Consensus 303 ~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 303 SKE---SSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEC---SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ecC---CCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 543 337999999999999999999999999986
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-34 Score=317.68 Aligned_cols=307 Identities=14% Similarity=0.204 Sum_probs=234.3
Q ss_pred CCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--ceeEEEeccCCCCCcceEEEcCCCCEEEEEeCC
Q 001184 576 EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV--NMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD 653 (1130)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~d 653 (1130)
+.+++..+.+|.. .|.+++|+++ +|++|+.|+.|++||+..+ +.+..+....+...|.+++|+|++++|++++.|
T Consensus 3 ~~~~~~~~~~h~~-~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 3 SINLIKSLKLYKE-KIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp CCEEEEEEECCSS-CEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred ccccceeeccCCC-ceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence 3556778888776 8999999987 9999999999999999875 344444332355689999999999999999999
Q ss_pred CcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCccc
Q 001184 654 QGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRN 733 (1130)
Q Consensus 654 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1130)
++|++|++.......
T Consensus 80 ~~v~iw~~~~~~~~~----------------------------------------------------------------- 94 (330)
T 2hes_X 80 STVSIWAKEESADRT----------------------------------------------------------------- 94 (330)
T ss_dssp SCEEEEEC------------------------------------------------------------------------
T ss_pred CcEEEEEcccCcCcc-----------------------------------------------------------------
Confidence 999999975320000
Q ss_pred ccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCccccccccc
Q 001184 734 LEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAP 813 (1130)
Q Consensus 734 ~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 813 (1130)
.. .. . +.
T Consensus 95 --------------------------------~~-----------~~-~--------~~--------------------- 101 (330)
T 2hes_X 95 --------------------------------FE-----------MD-L--------LA--------------------- 101 (330)
T ss_dssp --------------------------------CC-----------CE-E--------EE---------------------
T ss_pred --------------------------------cc-----------ce-e--------EE---------------------
Confidence 00 00 0 00
Q ss_pred ccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCC----ceeEEEEeCCCCCeEEEEEeCCCCc
Q 001184 814 QHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMN----FKVMTTFMSPPPASTFLAFHPQDNN 888 (1130)
Q Consensus 814 ~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~sp~~~~ 888 (1130)
...+|...|.+++|+|+|++|++++ |++|++||+.. .+++..+.+|...|.+++|+| ++.
T Consensus 102 --------------~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~ 166 (330)
T 2hes_X 102 --------------IIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEA 166 (330)
T ss_dssp --------------EEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSS
T ss_pred --------------EEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCC
Confidence 0015888999999999999999998 89999999942 357788899999999999999 899
Q ss_pred EEEEEeCCCcEEEEEeecC--eEEEEEecCCCCeeEEEEccC--CCeEEEEeCCCcEEEEECCCCcccce---eeEeccC
Q 001184 889 IIAIGMEDSTIQIYNVRVD--EVKTKLKGHQKHITGLAFSTN--LNILVSSGSDAQLIFWNTDTWEKRKS---IAIQLPA 961 (1130)
Q Consensus 889 ~lasg~~dg~v~iwd~~~~--~~~~~l~~h~~~V~~l~~s~d--g~~L~s~s~Dg~i~vwd~~~~~~~~~---~~~~~~~ 961 (1130)
+|++|+.|++|++||..++ +++..+.+|.+.|.+++|+|+ +.+|++++.|++|++||+..+..... .......
T Consensus 167 ~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 246 (330)
T 2hes_X 167 LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILP 246 (330)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECC
T ss_pred EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecc
Confidence 9999999999999999876 678899999999999999999 77999999999999999976422111 1222223
Q ss_pred CCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCcee--eeeeecCCCCCC-CeEEEEECC--CCCEEEEEeCCCcEEEE
Q 001184 962 GKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMEC--IRQWVPQDVLSS-PISSAAYSC--NSQLIYATFTDGSIGVF 1036 (1130)
Q Consensus 962 ~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~-~v~~v~~s~--dg~~l~t~~~Dg~i~vw 1036 (1130)
..+...|.+++|++++.++.++.|+.|++|+..+++. +.... ..|.. .|.+++|+| ++++||+|+.||+|++|
T Consensus 247 ~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~--~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W 324 (330)
T 2hes_X 247 DVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRA--LCHGVYEINVVKWLELNGKTILATGGDDGIVNFW 324 (330)
T ss_dssp SCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEES--CTTTTSCEEEEEEC-----CCEEEEETTSEEEEE
T ss_pred cccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccc--cccccceEEEEEEecCCCceEEEEecCCCcEEEE
Confidence 3345789999999888665568899999999987742 32221 23355 899999999 78999999999999999
Q ss_pred eCCC
Q 001184 1037 DADS 1040 (1130)
Q Consensus 1037 d~~~ 1040 (1130)
|+++
T Consensus 325 ~~~~ 328 (330)
T 2hes_X 325 SLEK 328 (330)
T ss_dssp EC--
T ss_pred Eecc
Confidence 9864
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=342.20 Aligned_cols=283 Identities=16% Similarity=0.163 Sum_probs=238.5
Q ss_pred CCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEE
Q 001184 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1130)
Q Consensus 348 ~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 427 (1130)
..+++++|+|+|++ |++|+.||.|++||+.+++... .+..| ..+...+|+|++++||+|
T Consensus 57 ~~~~~~~~s~~g~~-l~~~~~d~~v~i~d~~~~~~~~-------------------~~~~~-~~~~~~~~~~~~~~l~~~ 115 (420)
T 3vl1_A 57 DAGKGNTFEKVGSH-LYKARLDGHDFLFNTIIRDGSK-------------------MLKRA-DYTAVDTAKLQMRRFILG 115 (420)
T ss_dssp BCCTTCEEEEEETT-EEEEEETTEEEEEECCSEETTT-------------------TSCSC-CEEEEEEECSSSCEEEEE
T ss_pred ccccceeeeecCCe-EEEEEcCCcEEEEEecccceee-------------------EEecC-CceEEEEEecCCCEEEEE
Confidence 34558999999995 8999999999999998876543 23345 455666899999999999
Q ss_pred eCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeec
Q 001184 428 FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPH 506 (1130)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~ 506 (1130)
+.||.|++||+.+++... .+.+|.+.|++++|+|+++ +|++++.|+.|++|| .+++.+..+.+|...|.+++|+
T Consensus 116 ~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 190 (420)
T 3vl1_A 116 TTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190 (420)
T ss_dssp ETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred ECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence 999999999999876543 5678999999999999999 899999999999999 8889999999999999999997
Q ss_pred ccCCccEEEEEecCCcEEEEEccCCcceeeecC---CCccEEEE---------------------EEecCCCeEEEeeec
Q 001184 507 QKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA---PGLWCTTM---------------------LYSADGSRLFSCGTS 562 (1130)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~---~~~~v~~~---------------------~~s~~~~~l~~~~~~ 562 (1130)
+ ++.+|++++.|+.|++||+++.+....+.. +...+.++ +|+|++++|++++.
T Consensus 191 ~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~- 267 (420)
T 3vl1_A 191 D--RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV- 267 (420)
T ss_dssp T--TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET-
T ss_pred C--CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC-
Confidence 6 558999999999999999998887777654 33344444 45788999999886
Q ss_pred CCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCce-eEEEeccCCCCCcceEEE
Q 001184 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDNVNM-LTSTEAEGGLPSLPRLRF 640 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~i~~v~~ 640 (1130)
++.|++||+++++....+...+...+.+++|+|+++ ++++|+.||.|++||+.+++. +..+..+. ...+.++.+
T Consensus 268 ---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~~ 343 (420)
T 3vl1_A 268 ---SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINE-GTPINNVYF 343 (420)
T ss_dssp ---TSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEEST-TSCEEEEEE
T ss_pred ---CCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccC-CCCceEEEe
Confidence 899999999999988888766666899999999998 999999999999999998754 66666532 236777755
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 641 NKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 641 s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+++++|++++.|+.|++|++...
T Consensus 344 -~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 344 -AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp -ETTEEEEEETTTEEEEEEEECCT
T ss_pred -CCCCEEEEecCCccEEEEeccCC
Confidence 46889999999999999998764
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=358.08 Aligned_cols=292 Identities=21% Similarity=0.292 Sum_probs=250.1
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
+|.+.|++++|+|++..+|++|+.||+|+|||+.++..... .....+.+|...|.+++|+|||++|
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~v~~s~~g~~l 445 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGHSHFVEDVVLSSDGQFA 445 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECCSSCEEEEEECTTSSEE
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCCCCcEEEEEECCCCCEE
Confidence 59999999999998766899999999999999986543210 0112478999999999999999999
Q ss_pred EEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEe----cCCCcCE
Q 001184 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQF----EGHEAPV 500 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~----~~h~~~v 500 (1130)
++|+.|++|++||+.++.... .+.+|...|.+++|+|+++ +|++|+.|++|++||..+.+...+ .+|...|
T Consensus 446 ~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v 520 (694)
T 3dm0_A 446 LSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWV 520 (694)
T ss_dssp EEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCE
T ss_pred EEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcE
Confidence 999999999999999987554 6789999999999999999 799999999999999655555444 4799999
Q ss_pred EEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCcee
Q 001184 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK 580 (1130)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1130)
.+++|++......+++++.|++|++||++.......+..|...|.+++|+|++++|++++. ++.|++||+.+++.+
T Consensus 521 ~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~~~~~~~ 596 (694)
T 3dm0_A 521 SCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDLAEGKKL 596 (694)
T ss_dssp EEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEETTTTEEE
T ss_pred EEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEECCCCceE
Confidence 9999988766678999999999999999999888899999999999999999999999986 899999999999888
Q ss_pred EEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccC-----------------CCCCcceEEEcCC
Q 001184 581 RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEG-----------------GLPSLPRLRFNKE 643 (1130)
Q Consensus 581 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----------------~~~~i~~v~~s~~ 643 (1130)
..+..+ ..+.+++|+|++.++++++ ++.|++||+.+++.+..+..+. +...+.+++|+|+
T Consensus 597 ~~~~~~--~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spd 673 (694)
T 3dm0_A 597 YSLEAN--SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSAD 673 (694)
T ss_dssp ECCBCS--SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTT
T ss_pred EEecCC--CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCC
Confidence 776643 3699999999988777665 5669999999998887765321 1113678999999
Q ss_pred CCEEEEEeCCCcEEEEEcC
Q 001184 644 GNLLVVTTADQGIKILANA 662 (1130)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~ 662 (1130)
|++|++|+.||.|++|++.
T Consensus 674 g~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 674 GSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp SSEEEEEETTSEEEEEEC-
T ss_pred CCEEEEEcCCCeEEEEecc
Confidence 9999999999999999974
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=345.75 Aligned_cols=273 Identities=10% Similarity=0.088 Sum_probs=211.6
Q ss_pred ccceeeeccCCCCEEEEEEecCC---------CeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecC
Q 001184 337 PRAVACTMHQGSSVVSMDFHPFH---------HTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKD 407 (1130)
Q Consensus 337 ~~~~~~~~~h~~~V~~v~fspdg---------~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (1130)
+.....++.+.+.|++|+|+|++ + +||+|+.++. +
T Consensus 123 ~~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~--------~--------------------------- 166 (524)
T 2j04_B 123 GKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYM--------D--------------------------- 166 (524)
T ss_dssp CCSCEEEEECCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC--------------------------------------
T ss_pred CCcceEEEECCCceeEEEecccCCCCccCcCCe-EEEEEEeccc--------C---------------------------
Confidence 45566667789999999999997 5 6888875531 0
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCcccee-eeeeecCCCCeeEEEEecC------CCceEEEEEcCCCcE
Q 001184 408 SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQ-SLEIDAHVGGVNDLAFSYP------NKQLCIVTCGDDKLI 480 (1130)
Q Consensus 408 h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~-~~~~~~h~~~V~~i~~s~d------~~~l~l~s~s~d~~v 480 (1130)
-..+|+++.||+++.|++|+|||+.+++.... ...+.+|.+.|.+++|+|+ +. +|++++.|++|
T Consensus 167 -------~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~--~LAs~s~Dgtv 237 (524)
T 2j04_B 167 -------EPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVG--CLSFVSQEGTI 237 (524)
T ss_dssp ----------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSC--EEEEEETTSCE
T ss_pred -------CccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCc--eEEEEecCCeE
Confidence 01378999999999999999999988764321 2346678899999999997 45 79999999999
Q ss_pred EEEe-cCCCe-----------eeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcc-eeeecCCCccEEEE
Q 001184 481 RVWD-LSGRK-----------LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS-RVDYDAPGLWCTTM 547 (1130)
Q Consensus 481 ~iwd-~~~~~-----------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~ 547 (1130)
+||| ..+.. ...+.+|...|.+++|++. ..|++|+.||+|++||+++... ...+..|...|.++
T Consensus 238 rlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~---~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv 314 (524)
T 2j04_B 238 NFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP---TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSV 314 (524)
T ss_dssp EEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS---SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEE
T ss_pred EEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC---CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEE
Confidence 9999 44432 2477899999999999752 4799999999999999987643 44578899999999
Q ss_pred --EEecCC-CeEEEeeecCCCCcEEEEeeCCCCceeEEEecccC-ceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 001184 548 --LYSADG-SRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRK-KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNML 623 (1130)
Q Consensus 548 --~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 623 (1130)
+|+|++ ++|++++. |++|++||+++++....+.+|.. ..+.+++|+|+++.+++++.|++|++||++++..+
T Consensus 315 ~~~~s~~g~~~laS~S~----D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~ 390 (524)
T 2j04_B 315 STAYSDFEDTVVSTVAV----DGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAV 390 (524)
T ss_dssp EEECCTTSCCEEEEEET----TSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCC
T ss_pred EEEcCCCCCeEEEEecc----CCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccc
Confidence 578888 88999986 99999999999888888877654 24778999999999999999999999999999888
Q ss_pred EEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001184 624 TSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANAD 663 (1130)
Q Consensus 624 ~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 663 (1130)
..+..|.. .|.+++|+|++++|++|+.|++|++|+...
T Consensus 391 ~~l~gH~~--~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 391 HPLVSRET--TITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp EEEEECSS--CEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred eeeecCCC--ceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 87776544 899999999999999999999999999643
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-34 Score=328.41 Aligned_cols=290 Identities=15% Similarity=0.199 Sum_probs=243.7
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC-CCC
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGN 422 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~ 422 (1130)
.+|...|++++|+|++..+|++|+.||.|+|||+.+++..... ...+|...|.+++|+| +++
T Consensus 70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----------------~~~~h~~~v~~~~~~~~~~~ 132 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI-----------------QGMGPGDAITGMKFNQFNTN 132 (383)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE-----------------CCCSTTCBEEEEEEETTEEE
T ss_pred cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceee-----------------ecCCcCCceeEEEeCCCCCC
Confidence 3599999999999999337999999999999999987765410 1347999999999999 789
Q ss_pred EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCCCcCEEE
Q 001184 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYS 502 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~~~v~~ 502 (1130)
+|++++.|+.|++||+.+ ..+.......+|...|.+++|+|+++ ++++++.|+.|++||.+++.+..+.+|...|.+
T Consensus 133 ~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~ 209 (383)
T 3ei3_B 133 QLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTH 209 (383)
T ss_dssp EEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEETTSCEEEEEECSSSCEEE
T ss_pred EEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEECCCCEEEEeccCCCcEEE
Confidence 999999999999999986 33443333345568899999999999 899999999999999889999999999999999
Q ss_pred EeecccCCcc-EEEEEecCCcEEEEEccC----CcceeeecCCCccEEEEEEec-CCCeEEEeeecCCCCcEEEEeeCCC
Q 001184 503 VCPHQKENIH-FIFSTAVDGKIKAWLYDN----VGSRVDYDAPGLWCTTMLYSA-DGSRLFSCGTSKEGDSHLVEWNESE 576 (1130)
Q Consensus 503 ~~~~~~~~~~-~l~s~s~dg~i~vwd~~~----~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1130)
++|++. +. ++++++.|+.|++||+++ ......+ .+...|.+++|+| ++++|++++. ++.|++||+.+
T Consensus 210 ~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~~i~iwd~~~ 282 (383)
T 3ei3_B 210 AEFNPR--CDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RNEIRVYSSYD 282 (383)
T ss_dssp EEECSS--CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SSEEEEEETTB
T ss_pred EEECCC--CCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CCcEEEEECCC
Confidence 999764 35 899999999999999987 3334444 5788999999999 9999999986 89999999999
Q ss_pred CceeEEEecccC----------------ceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEE
Q 001184 577 GALKRTYIGFRK----------------KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRF 640 (1130)
Q Consensus 577 ~~~~~~~~~~~~----------------~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~ 640 (1130)
++....+.+|.. ..+..++|+|++++ +++.||.|++||+.+++.+..+..+.+...+..++|
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~ 360 (383)
T 3ei3_B 283 WSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKF 360 (383)
T ss_dssp TTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEE
T ss_pred CccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEE
Confidence 988777775431 13344666777666 777999999999999999999987655557788899
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCC
Q 001184 641 NKEGNLLVVTTADQGIKILANAD 663 (1130)
Q Consensus 641 s~~~~~l~~~~~dg~i~iw~~~~ 663 (1130)
+|++++|++++ |+.|++|++++
T Consensus 361 s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 361 SPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CTTSSEEEEEE-TTEEEEEECC-
T ss_pred ecCccEEEEec-CCcEEEEecCC
Confidence 99999999997 99999999864
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=336.84 Aligned_cols=343 Identities=11% Similarity=0.108 Sum_probs=280.2
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCe
Q 001184 411 SVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRK 489 (1130)
Q Consensus 411 ~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~ 489 (1130)
.+++++|+|+|++|++++.|+.|++||+.+++... .+..| ..+....|+++++ +|++|+.|+.|++|| .+++.
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~ 131 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNLQ 131 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCEE
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcce
Confidence 45579999999999999999999999998876544 34455 4455667899999 899999999999999 77777
Q ss_pred eeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEE
Q 001184 490 LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHL 569 (1130)
Q Consensus 490 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1130)
+..+.+|...|.+++|++ ++.+|++++.|+.|++||+++.+....+..|...|.+++|+|++++|++++. ++.|
T Consensus 132 ~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~v 205 (420)
T 3vl1_A 132 REIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL----DGTI 205 (420)
T ss_dssp EEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET----TSCE
T ss_pred eeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC----CCcE
Confidence 777889999999999976 4579999999999999999999988899999999999999999999999986 8999
Q ss_pred EEeeCCCCceeEEEeccc--CceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEE
Q 001184 570 VEWNESEGALKRTYIGFR--KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLL 647 (1130)
Q Consensus 570 ~~wd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l 647 (1130)
++||+++++.+..+..+. ...+.++++.+.+... ....+...+.+++|+|++++|
T Consensus 206 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----------------------~~~~~~~~v~~~~~s~~~~~l 262 (420)
T 3vl1_A 206 RLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ-----------------------LHEISTSKKNNLEFGTYGKYV 262 (420)
T ss_dssp EEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS-----------------------CGGGCCCCCCTTCSSCTTEEE
T ss_pred EEeECCCCceeEEeecCCCCCCCccEEEEecCCcce-----------------------eeecccCcccceEEcCCCCEE
Confidence 999999999999887642 3357777776554221 011123368899999999999
Q ss_pred EEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccC
Q 001184 648 VVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARG 727 (1130)
Q Consensus 648 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1130)
++++.||.|++||+.++....
T Consensus 263 ~~~~~dg~i~i~d~~~~~~~~----------------------------------------------------------- 283 (420)
T 3vl1_A 263 IAGHVSGVITVHNVFSKEQTI----------------------------------------------------------- 283 (420)
T ss_dssp EEEETTSCEEEEETTTCCEEE-----------------------------------------------------------
T ss_pred EEEcCCCeEEEEECCCCceeE-----------------------------------------------------------
Confidence 999999999999986541000
Q ss_pred CCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCccc
Q 001184 728 IEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKA 807 (1130)
Q Consensus 728 ~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 807 (1130)
.
T Consensus 284 ----------------------------------------------------------------~--------------- 284 (420)
T 3vl1_A 284 ----------------------------------------------------------------Q--------------- 284 (420)
T ss_dssp ----------------------------------------------------------------E---------------
T ss_pred ----------------------------------------------------------------E---------------
Confidence 0
Q ss_pred ccccccccccCCCCcceeccCCCCCCCceeEEEEecCCC-EEEEEe-CCeEEEEECCCcee-EEEEeC-CCCCeEEEEEe
Q 001184 808 TAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDS-YVMSAG-GGKVSLFNMMNFKV-MTTFMS-PPPASTFLAFH 883 (1130)
Q Consensus 808 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~-~la~~~-dg~i~iwd~~~~~~-~~~~~~-~~~~i~~l~~s 883 (1130)
+...|...|.+++|+|+++ +|++++ ||.|++||+.+++. +..+.. |...+.++.+
T Consensus 285 --------------------~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~- 343 (420)
T 3vl1_A 285 --------------------LPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF- 343 (420)
T ss_dssp --------------------ECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-
T ss_pred --------------------cccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-
Confidence 0013677889999999998 888888 89999999988754 666665 6677888855
Q ss_pred CCCCcEEEEEeCCCcEEEEEeecC---------eEEEEEecCCCCeeEEEEccCCC---eEEEEeCCCcEEEEECCC
Q 001184 884 PQDNNIIAIGMEDSTIQIYNVRVD---------EVKTKLKGHQKHITGLAFSTNLN---ILVSSGSDAQLIFWNTDT 948 (1130)
Q Consensus 884 p~~~~~lasg~~dg~v~iwd~~~~---------~~~~~l~~h~~~V~~l~~s~dg~---~L~s~s~Dg~i~vwd~~~ 948 (1130)
+ ++.+|++++.||.|++|++... .....+.+|.+.|.+++|+|++. .|++++.+|.+.+|+++.
T Consensus 344 ~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 344 A-AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp E-TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred C-CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 4 5679999999999999999863 22334678999999999999999 888899999999999875
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-35 Score=341.28 Aligned_cols=347 Identities=9% Similarity=0.082 Sum_probs=263.7
Q ss_pred ecCCCccEEEEEEcC-CCCEEEEEeCCCeEEEEEecC---CccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcE
Q 001184 405 VKDSSISVSRVAWSP-DGNFIGVAFTKHLIHLYTYQG---SNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480 (1130)
Q Consensus 405 ~~~h~~~V~~v~~sp-dg~~las~~~d~~i~vwd~~~---~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v 480 (1130)
..+|.+.|++++|+| |+++||+|+.||+|++||+.+ +........+ +|.+.|.+++|+|+++ +|++|+.|++|
T Consensus 59 ~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i 135 (437)
T 3gre_A 59 MENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQI 135 (437)
T ss_dssp CTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred ccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEE
Confidence 379999999999999 999999999999999999987 5433323233 5999999999999999 89999999999
Q ss_pred EEEec----CCCeeeEecC------------CCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecC--CCc
Q 001184 481 RVWDL----SGRKLFQFEG------------HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA--PGL 542 (1130)
Q Consensus 481 ~iwd~----~~~~~~~~~~------------h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~~ 542 (1130)
++||. +++.+..+.+ +...+.++.+...+++.+|++++.|+.|++||+++.+....+.. |..
T Consensus 136 ~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~ 215 (437)
T 3gre_A 136 IVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHG 215 (437)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGC
T ss_pred EEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCC
Confidence 99994 5655554432 45566666655667789999999999999999999998888887 678
Q ss_pred cEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEc----CCCCEEEEEeCCCcEEEEeCC
Q 001184 543 WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFD----TTRNRILAAGEDNQIKFWDMD 618 (1130)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~dg~i~vwd~~ 618 (1130)
.|.+++|+|++++|++++. ++.|++||+++++.+..+...+...+.+++++ +++.++++++.||.|++||+.
T Consensus 216 ~v~~~~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 291 (437)
T 3gre_A 216 AVSSICIDEECCVLILGTT----RGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV 291 (437)
T ss_dssp CEEEEEECTTSCEEEEEET----TSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred ceEEEEECCCCCEEEEEcC----CCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC
Confidence 9999999999999999986 89999999999999998863334489999655 467799999999999999999
Q ss_pred CCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeecccc
Q 001184 619 NVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITP 698 (1130)
Q Consensus 619 ~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 698 (1130)
+++.+..+..+.. .+..+.|+|+++.+ ...
T Consensus 292 ~~~~~~~~~~~~~--~~~~~~~~~~~~~l--------------~~~---------------------------------- 321 (437)
T 3gre_A 292 KGHCQYAFINSDE--QPSMEHFLPIEKGL--------------EEL---------------------------------- 321 (437)
T ss_dssp TTEEEEEEESSSS--CCCGGGGSCBCSSG--------------GGC----------------------------------
T ss_pred CCcEEEEEEcCCC--CCccceeccccccc--------------ccc----------------------------------
Confidence 9988887765543 44444455543221 000
Q ss_pred ccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEecc
Q 001184 699 VLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNS 778 (1130)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 778 (1130)
T Consensus 322 -------------------------------------------------------------------------------- 321 (437)
T 3gre_A 322 -------------------------------------------------------------------------------- 321 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEE
Q 001184 779 GIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVS 857 (1130)
Q Consensus 779 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~ 857 (1130)
.+ ....|...|.+++|+ ++++|++++ ||.|+
T Consensus 322 -----------~~------------------------------------~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~ 353 (437)
T 3gre_A 322 -----------NF------------------------------------CGIRSLNALSTISVS-NDKILLTDEATSSIV 353 (437)
T ss_dssp -----------CC------------------------------------CCCCSGGGGCCEEEE-TTEEEEEEGGGTEEE
T ss_pred -----------ee------------------------------------cccccCCceEEEEEC-CceEEEecCCCCeEE
Confidence 00 000267778889999 778888888 89999
Q ss_pred EEECCCceeEEEEeCCC---CCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccC--CCeE
Q 001184 858 LFNMMNFKVMTTFMSPP---PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTN--LNIL 932 (1130)
Q Consensus 858 iwd~~~~~~~~~~~~~~---~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d--g~~L 932 (1130)
+||+.+++....+.+|. .......+++ +..+++.. |+...+.....+..|.+.|++++|+++ +.+|
T Consensus 354 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l 424 (437)
T 3gre_A 354 MFSLNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLL 424 (437)
T ss_dssp EEETTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC-------------CCCEEEEEEEESSSSEEE
T ss_pred EEECCCcccceEEecccccCceEEEEEeec-ceEEEEEe--------cccccccccCcccccccceeeEeeeccCCceEE
Confidence 99999999888888754 3355566666 44444433 333344445666779999999999998 7899
Q ss_pred EEEeCCCcEEEEE
Q 001184 933 VSSGSDAQLIFWN 945 (1130)
Q Consensus 933 ~s~s~Dg~i~vwd 945 (1130)
++++.||.|+||+
T Consensus 425 ~s~~~dG~I~iw~ 437 (437)
T 3gre_A 425 VACDNSGLIGIFQ 437 (437)
T ss_dssp EEEETTSCEEEEC
T ss_pred EEEcCCceEEEeC
Confidence 9999999999995
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=316.17 Aligned_cols=246 Identities=22% Similarity=0.343 Sum_probs=207.8
Q ss_pred eecCCCccEEEEEE-----cC-CCCEEEEEeCCCeEEEEEecCCcc----ceeeeeeecCCCCeeEEEEecCCCceEEEE
Q 001184 404 IVKDSSISVSRVAW-----SP-DGNFIGVAFTKHLIHLYTYQGSND----LCQSLEIDAHVGGVNDLAFSYPNKQLCIVT 473 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~-----sp-dg~~las~~~d~~i~vwd~~~~~~----~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s 473 (1130)
.+.+|.+.|++++| ++ |+++||+|+.|++|++||+..++. ......+.+|...|.+++|+|++. ++++
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~s 93 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAIS 93 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEEE
Confidence 68899999999999 77 999999999999999999976532 123346789999999999999999 8999
Q ss_pred EcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeee---cCCCccEEEEEE
Q 001184 474 CGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY---DAPGLWCTTMLY 549 (1130)
Q Consensus 474 ~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~ 549 (1130)
|+.|++|++|| .+++.+..+.+|...|.+++|+| ++.+|++++.|++|++||+.... .... ..+...|.+++|
T Consensus 94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILGEC-KFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSSCE-EEECCTTTSCSSCEEEEEE
T ss_pred EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccCCc-eeeeecccCCCceeeeeee
Confidence 99999999999 88999999999999999999975 55799999999999999997432 2222 256778999999
Q ss_pred ecCC----------CeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001184 550 SADG----------SRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1130)
Q Consensus 550 s~~~----------~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 619 (1130)
+|++ .++++++. ++.|++|| ...+....+.+|.. .+.+++|+|++++|++|+.||.|++||+..
T Consensus 171 ~~~~~~~~~~~~~~~~l~s~~~----d~~i~iwd-~~~~~~~~~~~h~~-~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 171 SPIMKSANKVQPFAPYFASVGW----DGRLKVWN-TNFQIRYTFKAHES-NVNHLSISPNGKYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp CCCCCSCSCCCSSCCEEEEEET----TSEEEEEE-TTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred ccccccccccCCCCCEEEEEcC----CCEEEEEc-CCCceeEEEcCccc-cceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 9987 68898886 89999999 45677778888765 899999999999999999999999999944
Q ss_pred -CceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 620 -VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 620 -~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
......+.. .+ .|.+++|+|++.+++++ .|+.+++|++.++
T Consensus 245 ~~~~~~~~~~-~~--~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~ 286 (343)
T 2xzm_R 245 LTYPQREFDA-GS--TINQIAFNPKLQWVAVG-TDQGVKIFNLMTQ 286 (343)
T ss_dssp CSSCSEEEEC-SS--CEEEEEECSSSCEEEEE-ESSCEEEEESSSC
T ss_pred CcccceeecC-CC--cEEEEEECCCCCEEEEE-CCCCEEEEEeCCC
Confidence 444444432 22 69999999999887755 5778999998765
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-35 Score=337.81 Aligned_cols=318 Identities=15% Similarity=0.206 Sum_probs=265.5
Q ss_pred ccccCCCCCcccccCCccc-ceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCC----ceeecccceeeecc
Q 001184 320 ATYPVPSQQATWSLDDLPR-AVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLR----ERLVSKPFKIWDMS 394 (1130)
Q Consensus 320 ~~~s~~~~~~~~~~~~~~~-~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~----~~~~~~~~~~~~~~ 394 (1130)
++++.++.+.+|+.+.... .....+.|...|++++|+|+++ +|++|+.||.|+|||+.+. +.+.
T Consensus 39 ~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~vw~~~~~~~~~~~~~---------- 107 (416)
T 2pm9_A 39 ANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNK-IIAGALDNGSLELYSTNEANNAINSMA---------- 107 (416)
T ss_dssp SSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSS-CEEEEESSSCEEEECCSSTTSCCCEEE----------
T ss_pred cccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCC-eEEEEccCCeEEEeecccccccccchh----------
Confidence 4557788888898876543 3555667999999999999998 5899999999999999872 2222
Q ss_pred ccccceeeeeecCCCccEEEEEEcCC-CCEEEEEeCCCeEEEEEecCCc------cceeeeeeecCCCCeeEEEEecCCC
Q 001184 395 NCSMMLQAAIVKDSSISVSRVAWSPD-GNFIGVAFTKHLIHLYTYQGSN------DLCQSLEIDAHVGGVNDLAFSYPNK 467 (1130)
Q Consensus 395 ~~~~~~~~~~~~~h~~~V~~v~~spd-g~~las~~~d~~i~vwd~~~~~------~~~~~~~~~~h~~~V~~i~~s~d~~ 467 (1130)
.+.+|...|.+++|+|+ +++|++++.|+.|++||+.+++ .......+.+|...|.+++|+|++.
T Consensus 108 ---------~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 178 (416)
T 2pm9_A 108 ---------RFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLA 178 (416)
T ss_dssp ---------ECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCT
T ss_pred ---------hccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCC
Confidence 46789999999999998 8999999999999999999876 3332234568999999999999943
Q ss_pred ceEEEEEcCCCcEEEEe-cCCCeeeEecCC------CcCEEEEeecccCCccEEEEEecCC---cEEEEEccCC-cceee
Q 001184 468 QLCIVTCGDDKLIRVWD-LSGRKLFQFEGH------EAPVYSVCPHQKENIHFIFSTAVDG---KIKAWLYDNV-GSRVD 536 (1130)
Q Consensus 468 ~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h------~~~v~~~~~~~~~~~~~l~s~s~dg---~i~vwd~~~~-~~~~~ 536 (1130)
. ++++++.|+.|++|| .+++.+..+..| ...|.+++|++.. ..++++++.|+ .|++||+++. .....
T Consensus 179 ~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~ 256 (416)
T 2pm9_A 179 H-VFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN-STRVATATGSDNDPSILIWDLRNANTPLQT 256 (416)
T ss_dssp T-EEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSC-TTEEEEEECCSSSCCCCEEETTSTTSCSBC
T ss_pred c-EEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCC-CCEEEEEECCCCCceEEEEeCCCCCCCcEE
Confidence 3 899999999999999 778888888776 7899999997643 26899999999 9999999986 45556
Q ss_pred ec-CCCccEEEEEEec-CCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCC-CEEEEEeCCCcEE
Q 001184 537 YD-APGLWCTTMLYSA-DGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIK 613 (1130)
Q Consensus 537 ~~-~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~ 613 (1130)
+. .|...|.+++|+| ++++|++++. ++.|++||+.+++.+..+.+|.. .+.+++|+|++ .++++++.||.|+
T Consensus 257 ~~~~~~~~v~~~~~s~~~~~~l~s~~~----dg~v~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~d~~i~ 331 (416)
T 2pm9_A 257 LNQGHQKGILSLDWCHQDEHLLLSSGR----DNTVLLWNPESAEQLSQFPARGN-WCFKTKFAPEAPDLFACASFDNKIE 331 (416)
T ss_dssp CCSCCSSCEEEEEECSSCSSCEEEEES----SSEEEEECSSSCCEEEEEECSSS-CCCCEEECTTCTTEEEECCSSSEEE
T ss_pred eecCccCceeEEEeCCCCCCeEEEEeC----CCCEEEeeCCCCccceeecCCCC-ceEEEEECCCCCCEEEEEecCCcEE
Confidence 66 7888999999999 9999999986 89999999999999999998766 79999999999 8999999999999
Q ss_pred EEeCCCCceeEEEec--------------------c-------------CCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001184 614 FWDMDNVNMLTSTEA--------------------E-------------GGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1130)
Q Consensus 614 vwd~~~~~~~~~~~~--------------------~-------------~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~ 660 (1130)
+||+.++........ + .+...+.+++|+|+|++|++++.|+.|+||+
T Consensus 332 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~ 411 (416)
T 2pm9_A 332 VQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITN 411 (416)
T ss_dssp EEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBC
T ss_pred EEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEE
Confidence 999987653221100 0 0334677999999999999999999999999
Q ss_pred cCCC
Q 001184 661 NADG 664 (1130)
Q Consensus 661 ~~~~ 664 (1130)
+.+.
T Consensus 412 ~~~~ 415 (416)
T 2pm9_A 412 PKIS 415 (416)
T ss_dssp CCCC
T ss_pred eccC
Confidence 8764
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=344.08 Aligned_cols=343 Identities=10% Similarity=0.084 Sum_probs=233.1
Q ss_pred CCccEEEEEEcCCC---------CEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCC
Q 001184 408 SSISVSRVAWSPDG---------NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK 478 (1130)
Q Consensus 408 h~~~V~~v~~spdg---------~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~ 478 (1130)
+.+.|.+|+|+|++ ++||+|+.++.. -..+|+++ ++++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhh--hhccCCCCc
Confidence 57789999999987 799999866420 01368888 789999999
Q ss_pred cEEEEe-cCCCee----eEecCCCcCEEEEeeccc----CCccEEEEEecCCcEEEEEccCCcc-----------eeeec
Q 001184 479 LIRVWD-LSGRKL----FQFEGHEAPVYSVCPHQK----ENIHFIFSTAVDGKIKAWLYDNVGS-----------RVDYD 538 (1130)
Q Consensus 479 ~v~iwd-~~~~~~----~~~~~h~~~v~~~~~~~~----~~~~~l~s~s~dg~i~vwd~~~~~~-----------~~~~~ 538 (1130)
+|+||| ..++.. ..+.+|.+.|.+++|+|. +++.+|++++.||+|++||+..... ...+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 999999 555532 446678899999999986 3467999999999999999976542 23566
Q ss_pred CCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc-eeEEEecccCceeEEE--EEcCCC-CEEEEEeCCCcEEE
Q 001184 539 APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA-LKRTYIGFRKKSAGVV--QFDTTR-NRILAAGEDNQIKF 614 (1130)
Q Consensus 539 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~dg~i~v 614 (1130)
.|...|.+++|++++ .|++++. |++|++||++++. ....+.+|.. .|.++ +|++++ .+|++++.|++|++
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs~----DgtV~lWD~~~~~~~~~~~~~H~~-~V~sv~~~~s~~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGFK----NGFVAEFDLTDPEVPSFYDQVHDS-YILSVSTAYSDFEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEET----TSEEEEEETTBCSSCSEEEECSSS-CEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred cCCCCEEEEEecCCC-eEEEEeC----CCEEEEEECCCCCCceEEeecccc-cEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence 788899999999865 7888876 9999999999774 4556777766 78888 578887 89999999999999
Q ss_pred EeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceee
Q 001184 615 WDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVT 694 (1130)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1130)
||+++++.+..+..+.....|.+++|+|+++.+++++.|++|++||+.++. ....+
T Consensus 338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~-~~~~l----------------------- 393 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF-AVHPL----------------------- 393 (524)
T ss_dssp ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT-CCEEE-----------------------
T ss_pred EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc-cceee-----------------------
Confidence 999998877666655432357899999999999999999999999986541 00000
Q ss_pred ccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEE
Q 001184 695 TITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLL 774 (1130)
Q Consensus 695 ~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 774 (1130)
.
T Consensus 394 ---------------------------------------------------------------------~---------- 394 (524)
T 2j04_B 394 ---------------------------------------------------------------------V---------- 394 (524)
T ss_dssp ---------------------------------------------------------------------E----------
T ss_pred ---------------------------------------------------------------------e----------
Confidence 0
Q ss_pred EeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-C
Q 001184 775 YTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-G 853 (1130)
Q Consensus 775 ~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-d 853 (1130)
+|...|.+++|+|+|++|++|+ |
T Consensus 395 --------------------------------------------------------gH~~~V~sva~Sp~g~~l~Sgs~D 418 (524)
T 2j04_B 395 --------------------------------------------------------SRETTITAIGVSRLHPMVLAGSAD 418 (524)
T ss_dssp --------------------------------------------------------ECSSCEEEEECCSSCCBCEEEETT
T ss_pred --------------------------------------------------------cCCCceEEEEeCCCCCeEEEEECC
Confidence 2455555666666666666555 5
Q ss_pred CeEEEEECCCceeEEEEe-----CCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEee-cCeEEEEEecCCCCeeEEEEcc
Q 001184 854 GKVSLFNMMNFKVMTTFM-----SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR-VDEVKTKLKGHQKHITGLAFST 927 (1130)
Q Consensus 854 g~i~iwd~~~~~~~~~~~-----~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~-~~~~~~~l~~h~~~V~~l~~s~ 927 (1130)
|+|++||+..+ .+.... .+...+.+++|+| ++..+. ... .+.+|+.. ++.++..+.+|...|.+|+|+|
T Consensus 419 gtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp-~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp 493 (524)
T 2j04_B 419 GSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSI-KDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNE 493 (524)
T ss_dssp TEEECCBSCSS-TTTCC------CCCCEEEECBCCS-SSCEEE-ECC--CCCCCC-------------CCCSCCCEEECC
T ss_pred CEEEEEechHh-hccccccCccceeeeEEEEeccCC-CCCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECCC
Confidence 66666665432 111110 0112466889999 666442 222 23444433 5677888999999999999999
Q ss_pred CCC---eEEEEeCCCcEEEEECCC
Q 001184 928 NLN---ILVSSGSDAQLIFWNTDT 948 (1130)
Q Consensus 928 dg~---~L~s~s~Dg~i~vwd~~~ 948 (1130)
++. +||+|+.||.|+||++..
T Consensus 494 ~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 494 TSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp STTTTTEEEEECTTSEEEEEECSC
T ss_pred CCCccHHHHhhccCceEEEEEccc
Confidence 964 999999999999999886
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=335.10 Aligned_cols=293 Identities=18% Similarity=0.260 Sum_probs=237.3
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC-CCCE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNF 423 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~ 423 (1130)
.|...|+|++|+|.+..+||+|+.||+|+|||+.+++.... ..+.+|.+.|++|+|+| |+++
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~-----------------~~~~gH~~~V~~l~f~p~~~~~ 179 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTF-----------------IKGIGAGGSITGLKFNPLNTNQ 179 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEE-----------------ECCCSSSCCCCEEEECSSCTTE
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeE-----------------EEccCCCCCEEEEEEeCCCCCE
Confidence 48899999999996555799999999999999988764321 12568999999999998 7899
Q ss_pred EEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCCCcCEEEE
Q 001184 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSV 503 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~~~v~~~ 503 (1130)
|++|+.||+|++||++++. .........+...+.+++|+|+++ +|++|+.||.|++||.+++.+..+.+|...|.++
T Consensus 180 l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v 256 (435)
T 4e54_B 180 FYASSMEGTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHV 256 (435)
T ss_dssp EEEECSSSCEEEEETTSCE-EEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEE
T ss_pred EEEEeCCCEEEEeeccCCc-eeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccCcceeEEEecccceEEee
Confidence 9999999999999998754 222222334455789999999999 8999999999999998888999999999999999
Q ss_pred eecccCCccEEEEEecCCcEEEEEccCCccee---eecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCcee
Q 001184 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV---DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK 580 (1130)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1130)
+|+|..+ .++++++.|+.|++||++...... ....|...|.+++|+|+|++|++++. |+.|++||+.++...
T Consensus 257 ~~~p~~~-~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iwd~~~~~~~ 331 (435)
T 4e54_B 257 ALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVYSASQWDCP 331 (435)
T ss_dssp EECTTCS-SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEEESSSSSSE
T ss_pred eecCCCc-eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEEECCCCccc
Confidence 9987543 588999999999999998766543 33457789999999999999999986 899999999999888
Q ss_pred EEEecccCc-----eeEEEEEcCCCCEEEEEe------------CCCcEEEEeCCCCceeEEEeccCCCCCcceE-EEcC
Q 001184 581 RTYIGFRKK-----SAGVVQFDTTRNRILAAG------------EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL-RFNK 642 (1130)
Q Consensus 581 ~~~~~~~~~-----~v~~~~~~~~~~~l~~~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v-~~s~ 642 (1130)
..+..|... ......|+|++..+++++ .++.|++||..+++.+..+..+ +...|.++ +|+|
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~-~~~~v~s~~~fsp 410 (435)
T 4e54_B 332 LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP-ESSGISSLNEFNP 410 (435)
T ss_dssp EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS-SCCCCCCEEEECT
T ss_pred eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC-CCCcEEEEEEECC
Confidence 877665431 122356777777666654 3467999999999998877543 33367776 6999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCC
Q 001184 643 EGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+|++|++|+ |+.|+||+++++
T Consensus 411 dg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 411 MGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp TSSCEEEEC-SSEEEECCCC--
T ss_pred CCCEEEEEc-CCcEEEEECCcC
Confidence 999999876 789999999877
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=320.59 Aligned_cols=290 Identities=14% Similarity=0.295 Sum_probs=232.4
Q ss_pred CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCC------------------ccEEEEEEecCCCeE
Q 001184 495 GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG------------------LWCTTMLYSADGSRL 556 (1130)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~------------------~~v~~~~~s~~~~~l 556 (1130)
+|...|.+++|+| ++++|++++ ++.+++|++.++.....+..+. ..|.+++|+|+|++|
T Consensus 62 ~h~~~V~~v~fsp--dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 62 DHTSVVCCVKFSN--DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp ECSSCCCEEEECT--TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred CCCCEEEEEEECC--CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence 6999999999965 567898876 7899999999887776655432 248999999999999
Q ss_pred EEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcc
Q 001184 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLP 636 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~ 636 (1130)
++++. ++.|++||+.+++.+..+.+|.. .|.+++|+|++++|++++.|+.|++||+.+++....+..+. .+.
T Consensus 139 ~s~~~----d~~i~iwd~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~---~v~ 210 (393)
T 1erj_A 139 ATGAE----DRLIRIWDIENRKIVMILQGHEQ-DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED---GVT 210 (393)
T ss_dssp EEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS---CEE
T ss_pred EEEcC----CCeEEEEECCCCcEEEEEccCCC-CEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCC---CcE
Confidence 99986 89999999999999999998776 89999999999999999999999999999999887776543 689
Q ss_pred eEEEcC-CCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCc
Q 001184 637 RLRFNK-EGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPS 715 (1130)
Q Consensus 637 ~v~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~ 715 (1130)
+++|+| +++++++++.|+.|++||+.++. ....+.. .
T Consensus 211 ~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~-~~~~~~~-------------------------~---------------- 248 (393)
T 1erj_A 211 TVAVSPGDGKYIAAGSLDRAVRVWDSETGF-LVERLDS-------------------------E---------------- 248 (393)
T ss_dssp EEEECSTTCCEEEEEETTSCEEEEETTTCC-EEEEEC-------------------------------------------
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCCc-EEEeecc-------------------------c----------------
Confidence 999999 89999999999999999987651 1100000 0
Q ss_pred ccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeee
Q 001184 716 TILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWK 795 (1130)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~ 795 (1130)
.....
T Consensus 249 --------------------------------------------~~~~~------------------------------- 253 (393)
T 1erj_A 249 --------------------------------------------NESGT------------------------------- 253 (393)
T ss_dssp ------------------------------------------------C-------------------------------
T ss_pred --------------------------------------------ccCCC-------------------------------
Confidence 00001
Q ss_pred cCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCC-----------
Q 001184 796 WNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMN----------- 863 (1130)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~----------- 863 (1130)
+|...|.+++|+|+|++|++++ |+.|++||+.+
T Consensus 254 -----------------------------------~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~ 298 (393)
T 1erj_A 254 -----------------------------------GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 298 (393)
T ss_dssp -----------------------------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred -----------------------------------CCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCC
Confidence 2444455555555555555554 45555555433
Q ss_pred -ceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEcc------CCCeEEEEe
Q 001184 864 -FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFST------NLNILVSSG 936 (1130)
Q Consensus 864 -~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~------dg~~L~s~s 936 (1130)
+.+...+.+|...|.+++|+| ++.+|++|+.||.|++||+.+++.+..+.+|.+.|.+++|++ ++++|++++
T Consensus 299 ~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs 377 (393)
T 1erj_A 299 SGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 377 (393)
T ss_dssp --CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred CCcceEEEecccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEEC
Confidence 345567788999999999999 889999999999999999999999999999999999999986 688999999
Q ss_pred CCCcEEEEECCC
Q 001184 937 SDAQLIFWNTDT 948 (1130)
Q Consensus 937 ~Dg~i~vwd~~~ 948 (1130)
.||+|++|++..
T Consensus 378 ~Dg~i~iW~~~~ 389 (393)
T 1erj_A 378 GDCKARIWKYKK 389 (393)
T ss_dssp TTSEEEEEEEEE
T ss_pred CCCcEEECcccc
Confidence 999999999865
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-32 Score=350.10 Aligned_cols=531 Identities=11% Similarity=0.027 Sum_probs=371.6
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcC------CCcEE
Q 001184 408 SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD------DKLIR 481 (1130)
Q Consensus 408 h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~------d~~v~ 481 (1130)
+.+.+.+.+||| +.||.++. +.|.+|++.+++.. .+.+|...+.+++|||||+ .|++++. +..|+
T Consensus 13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~----~lt~~~~~v~~~~~SPDG~--~la~~s~~~~~~~~~~i~ 83 (1045)
T 1k32_A 13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTR----KIVSNLGVINNARFFPDGR--KIAIRVMRGSSLNTADLY 83 (1045)
T ss_dssp CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEE----EEECSSSEEEEEEECTTSS--EEEEEEEESTTCCEEEEE
T ss_pred ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEE----EeeeCCCcccCeEECCCCC--EEEEEEeeccCCCCCeEE
Confidence 456789999996 58888876 68999999887633 4678999999999999999 5666543 34799
Q ss_pred EEecCCCeeeEecCCCcCE-------EEEeecccCCccEEEEEecC------CcEEEEEccCCcceeeecCCCccEEEEE
Q 001184 482 VWDLSGRKLFQFEGHEAPV-------YSVCPHQKENIHFIFSTAVD------GKIKAWLYDNVGSRVDYDAPGLWCTTML 548 (1130)
Q Consensus 482 iwd~~~~~~~~~~~h~~~v-------~~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~v~~~~ 548 (1130)
+||..+.....+..|...+ ..++|+|+ ++++++++.+ ..|..|++..+....... + ....++
T Consensus 84 ~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpD--g~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~--~~~~~~ 158 (1045)
T 1k32_A 84 FYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPD--GNLIISTDAMQPFSSMTCLYRVENDGINFVPLNL-G--PATHIL 158 (1045)
T ss_dssp EEETTTTEEEECCCCCEEEETTEECSEEEEECTT--CCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCS-C--SCSEEE
T ss_pred EEECCCCCeEEcccCCCcccccccccccccCCCC--CEEEEEECCcCCCcccceEEEEECCCCCeEEecC-C--Ccceee
Confidence 9996666688899999888 89999764 4677777754 357777776654433222 2 234577
Q ss_pred EecCCCeEEEeeecCC--------CCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-
Q 001184 549 YSADGSRLFSCGTSKE--------GDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN- 619 (1130)
Q Consensus 549 ~s~~~~~l~~~~~~~~--------~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~- 619 (1130)
|+| | ++++++...+ ++....+|....+.....+.+|.. .+.++.|+++ ..+++++.|+.+++|.+..
T Consensus 159 ~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~-~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~ 234 (1045)
T 1k32_A 159 FAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMST-HVSSPVIVGH-RIYFITDIDGFGQIYSTDLD 234 (1045)
T ss_dssp EET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSS-CCEEEEEETT-EEEEEECTTSSCEEEEEETT
T ss_pred eCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCC-cccceEEeCC-EEEEEEeccCceEEEEEeCC
Confidence 999 8 7777642111 122334443322234455566554 7889999988 5667778889999997653
Q ss_pred CceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccc
Q 001184 620 VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPV 699 (1130)
Q Consensus 620 ~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 699 (1130)
+.....+..+. .+...+|+|||+.|+.+ .++.|++|++... . +..+..+..
T Consensus 235 g~~~~~l~~~~---~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~-~-l~~l~~~~~----------------------- 285 (1045)
T 1k32_A 235 GKDLRKHTSFT---DYYPRHLNTDGRRILFS-KGGSIYIFNPDTE-K-IEKIEIGDL----------------------- 285 (1045)
T ss_dssp SCSCEECCCCC---SSCEEEEEESSSCEEEE-ETTEEEEECTTTC-C-EEECCCCCC-----------------------
T ss_pred CCcceEecCCC---CcceeeEcCCCCEEEEE-eCCEEEEecCCce-E-eeeeccCcc-----------------------
Confidence 33444444333 46778999999998887 4889999987322 1 111110000
Q ss_pred cccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEe-cc
Q 001184 700 LSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYT-NS 778 (1130)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~ 778 (1130)
.....| ..+...+..++|+ ||
T Consensus 286 ---------------------------------------~~~~~~-------------------~~~~~~v~~~~~S~pd 307 (1045)
T 1k32_A 286 ---------------------------------------ESPEDR-------------------IISIPSKFAEDFSPLD 307 (1045)
T ss_dssp ---------------------------------------CBCCSE-------------------EEECGGGGEEEEEECG
T ss_pred ---------------------------------------cccccc-------------------cccccccceeeecCCC
Confidence 000000 0145678899999 99
Q ss_pred CCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCC-ceeEEEEecCCCEEEEEe-CCeE
Q 001184 779 GIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAED-VVPCVALSKNDSYVMSAG-GGKV 856 (1130)
Q Consensus 779 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~i~~l~~s~dg~~la~~~-dg~i 856 (1130)
|+.+++++ ++.+.+|+... +.... + ..+.. .+..++|+ ||+.++.++ ++.+
T Consensus 308 G~~la~~~-~~~i~~~~~~~----------------------~~~~~--~-~~~~~~~~~~~~~s-dg~~l~~~s~~~~l 360 (1045)
T 1k32_A 308 GDLIAFVS-RGQAFIQDVSG----------------------TYVLK--V-PEPLRIRYVRRGGD-TKVAFIHGTREGDF 360 (1045)
T ss_dssp GGCEEEEE-TTEEEEECTTS----------------------SBEEE--C-SCCSCEEEEEECSS-SEEEEEEEETTEEE
T ss_pred CCEEEEEE-cCEEEEEcCCC----------------------CceEE--c-cCCCcceEEeeeEc-CCCeEEEEECCCce
Confidence 99998887 77888876532 22111 1 13455 78999999 999999888 5678
Q ss_pred E-EEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEE
Q 001184 857 S-LFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSS 935 (1130)
Q Consensus 857 ~-iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~ 935 (1130)
. +||+.+++... +..|...+..++|+| ++++|++++.++.|++||+.+++....+.+|.+.+.+++|||||++|+++
T Consensus 361 ~~~~d~~~~~~~~-l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~ 438 (1045)
T 1k32_A 361 LGIYDYRTGKAEK-FEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYG 438 (1045)
T ss_dssp EEEEETTTCCEEE-CCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEE
T ss_pred EEEEECCCCCceE-ecCCccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEE
Confidence 8 99998876544 347778899999999 89999999999999999999999888888899999999999999999988
Q ss_pred eCCC----------cEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE-EcCCcEEEEECCCcee------
Q 001184 936 GSDA----------QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGSKMEC------ 998 (1130)
Q Consensus 936 s~Dg----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~------ 998 (1130)
+.++ .|++||+.+++. ..... +...+..++|+|||++|+. +.++...+|+......
T Consensus 439 ~~~~~~~~~~~~~~~i~l~d~~~g~~-----~~l~~--~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~ 511 (1045)
T 1k32_A 439 FPLKHGETDGYVMQAIHVYDMEGRKI-----FAATT--ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVS 511 (1045)
T ss_dssp EEECSSTTCSCCEEEEEEEETTTTEE-----EECSC--SSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCB
T ss_pred ecCccccccCCCCCeEEEEECCCCcE-----EEeeC--CCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCc
Confidence 7754 899999998541 12221 2256788999999999887 4555556665432211
Q ss_pred -ee---------------------------------eeecCCCCCCCeEEEEECCCCCEEEE-------------EeCCC
Q 001184 999 -IR---------------------------------QWVPQDVLSSPISSAAYSCNSQLIYA-------------TFTDG 1031 (1130)
Q Consensus 999 -~~---------------------------------~~~~~~~~~~~v~~v~~s~dg~~l~t-------------~~~Dg 1031 (1130)
+. .......+...+..++++|||+++++ ...+.
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~ 591 (1045)
T 1k32_A 512 KPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKG 591 (1045)
T ss_dssp EEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCE
T ss_pred eeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCc
Confidence 00 00011123567899999999997875 12345
Q ss_pred cEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q 001184 1032 SIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1096 (1130)
Q Consensus 1032 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~ 1096 (1130)
.|++||+.+++..... ..+..+.++| |+..|++++.| .|++||+.+++
T Consensus 592 ~l~~~d~~~~~~~~l~---------------~~v~~~~~S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 592 VLLKYDVKTRKVTEVK---------------NNLTDLRLSA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EEEEEETTTCCEEEEE---------------EEEEEEEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred eEEEEECCCCcEEEee---------------cCcceEEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 7889999888753221 1234578888 58889998877 79999998876
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-33 Score=315.89 Aligned_cols=287 Identities=13% Similarity=0.121 Sum_probs=254.0
Q ss_pred eeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCC
Q 001184 342 CTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1130)
Q Consensus 342 ~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 421 (1130)
...+|...|++++|+|+|+ +|++|+.||.|+|||+.+++.+. .+.+|...|.+++|+|++
T Consensus 27 ~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~ 86 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLG-------------------TLDGHTGTIWSIDVDCFT 86 (369)
T ss_dssp EEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEECTTS
T ss_pred EEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhh-------------------hhhhcCCcEEEEEEcCCC
Confidence 3446999999999999998 59999999999999999988765 477899999999999999
Q ss_pred CEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCC-----CcEEEEe-cCCC-------
Q 001184 422 NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD-----KLIRVWD-LSGR------- 488 (1130)
Q Consensus 422 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d-----~~v~iwd-~~~~------- 488 (1130)
++|++++.||.|++||+.+++.+. .+. |...|.+++|+|+++ ++++++.+ +.|++|| ..+.
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~ 160 (369)
T 3zwl_B 87 KYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHELTK 160 (369)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCCEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccceeecc
Confidence 999999999999999999987655 344 888999999999999 78999888 9999999 4432
Q ss_pred ----eeeEecCCCc--CEEEEeecccCCccEEEEEecCCcEEEEEccC-CcceeeecCCCccEEEEEEecCCCeEEEeee
Q 001184 489 ----KLFQFEGHEA--PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN-VGSRVDYDAPGLWCTTMLYSADGSRLFSCGT 561 (1130)
Q Consensus 489 ----~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1130)
.+..+..|.. .+.+++|++ ++.+|++++.||.|++||+++ ......+..+...|.+++|+|++++|++++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 238 (369)
T 3zwl_B 161 VSEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSR 238 (369)
T ss_dssp ECSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred cccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecC
Confidence 4455666776 899999976 557999999999999999998 6667788888999999999999999999986
Q ss_pred cCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCC--------------cEEEEeCCCCceeEEEe
Q 001184 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDN--------------QIKFWDMDNVNMLTSTE 627 (1130)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------------~i~vwd~~~~~~~~~~~ 627 (1130)
++.|++||+.+++.+..+.. ...+..++|+|+++++++++.++ .+++||..+++.+..+.
T Consensus 239 ----d~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 312 (369)
T 3zwl_B 239 ----DTNSFLVDVSTLQVLKKYET--DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ 312 (369)
T ss_dssp ----TSEEEEEETTTCCEEEEEEC--SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEE
T ss_pred ----CceEEEEECCCCceeeeecC--CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee
Confidence 89999999999999988873 34789999999999999999888 89999999999999887
Q ss_pred ccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 628 AEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 628 ~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
.+.. .|.+++|+|++++|++++.||.|++|++..+
T Consensus 313 ~~~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 313 GHFG--PLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp CCSS--CEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred cccC--cEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 6654 8999999999999999999999999999765
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-33 Score=307.58 Aligned_cols=287 Identities=17% Similarity=0.273 Sum_probs=249.9
Q ss_pred ceeeec-cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEE
Q 001184 339 AVACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1130)
Q Consensus 339 ~~~~~~-~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 417 (1130)
+..+.+ +|.+.|++++| |+++ +|++|+.||.|+|||+.+++... .+..|...|.+++|
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~~-------------------~~~~~~~~v~~~~~ 67 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLGT-------------------VVYTGQGFLNSVCY 67 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEEE-------------------EEEECSSCEEEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEEE-------------------EeecCCccEEEEEE
Confidence 344455 59999999999 9998 59999999999999998877654 46688999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCCC
Q 001184 418 SPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHE 497 (1130)
Q Consensus 418 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~ 497 (1130)
+|++++|++++.|+.|++|++...........+.+|...|.+++| +++ ++++++.|+.|++|| .++.+..+..|.
T Consensus 68 ~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d-~~~~~~~~~~~~ 142 (313)
T 3odt_A 68 DSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK-EGSLVYNLQAHN 142 (313)
T ss_dssp ETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE-TTEEEEEEECCS
T ss_pred CCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc-CCcEEEecccCC
Confidence 999999999999999999999876544455578899999999999 466 799999999999999 778888999999
Q ss_pred cCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecC-CCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC
Q 001184 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA-PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE 576 (1130)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1130)
..+.++++.+. ++..+++++.||.|++|| .......+.. +...+.+++|+|++. +++++. ++.|++||+++
T Consensus 143 ~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d~~~ 214 (313)
T 3odt_A 143 ASVWDAKVVSF-SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVDMHT 214 (313)
T ss_dssp SCEEEEEEEET-TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEETTT
T ss_pred CceeEEEEccC-CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEECCc
Confidence 99999999762 457999999999999999 3444555555 778999999999998 777765 89999999999
Q ss_pred CceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcE
Q 001184 577 GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGI 656 (1130)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i 656 (1130)
++.+..+.+|.. .+.+++|+|++ .+++++.||.|++||+.+++.+..+..+.. .|.+++|+|+++ +++++.||.|
T Consensus 215 ~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~-~~~~~~dg~i 289 (313)
T 3odt_A 215 GDVLRTYEGHES-FVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI--SIWSVDCMSNGD-IIVGSSDNLV 289 (313)
T ss_dssp CCEEEEEECCSS-CEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSS--CEEEEEECTTSC-EEEEETTSCE
T ss_pred hhhhhhhhcCCc-eEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCc--eEEEEEEccCCC-EEEEeCCCcE
Confidence 999999998766 89999999999 699999999999999999999998887654 799999999998 6679999999
Q ss_pred EEEEcCCC
Q 001184 657 KILANADG 664 (1130)
Q Consensus 657 ~iw~~~~~ 664 (1130)
++|++.++
T Consensus 290 ~iw~~~~~ 297 (313)
T 3odt_A 290 RIFSQEKS 297 (313)
T ss_dssp EEEESCGG
T ss_pred EEEeCCCC
Confidence 99999876
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=322.43 Aligned_cols=294 Identities=14% Similarity=0.172 Sum_probs=249.7
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC----
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD---- 420 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd---- 420 (1130)
+|.+.|++++|+| + +|++|+.||.|+|||+.+++...... ....+.+|...|.+++|+|+
T Consensus 14 ~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~-------------~~~~~~~h~~~v~~~~~~~~~~~~ 77 (397)
T 1sq9_A 14 AHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKD-------------KSYSHFVHKSGLHHVDVLQAIERD 77 (397)
T ss_dssp CSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGG-------------GEEEEECCTTCEEEEEEEEEEETT
T ss_pred hhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCC-------------cceEEecCCCcEEEEEEecccccC
Confidence 5999999999999 4 69999999999999999877211000 01146699999999999999
Q ss_pred C---CEEEEEeCCCeEEEEEecCCccce--eeeeeecC-----CCCeeEEEEe----cCCCceE-EEEEcCCCcEEEEe-
Q 001184 421 G---NFIGVAFTKHLIHLYTYQGSNDLC--QSLEIDAH-----VGGVNDLAFS----YPNKQLC-IVTCGDDKLIRVWD- 484 (1130)
Q Consensus 421 g---~~las~~~d~~i~vwd~~~~~~~~--~~~~~~~h-----~~~V~~i~~s----~d~~~l~-l~s~s~d~~v~iwd- 484 (1130)
| ++|++++.|+.|++||+.+++... ....+.+| ...|.+++|+ |+++ + |++++.|+.|++||
T Consensus 78 g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~dg~i~iwd~ 155 (397)
T 1sq9_A 78 AFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDVKGTTYIWKF 155 (397)
T ss_dssp TEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C--EEEEEEETTSCEEEEEE
T ss_pred CccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeCCCcEEEEeC
Confidence 9 999999999999999999887510 02356777 5899999999 9999 7 99999999999999
Q ss_pred cC------CCeee-----Ee-------cCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecC---C---
Q 001184 485 LS------GRKLF-----QF-------EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA---P--- 540 (1130)
Q Consensus 485 ~~------~~~~~-----~~-------~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~---~--- 540 (1130)
.+ ++.+. .+ ..|...|.+++|++ ++ ++++++.||.|++||+++......+.. |
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~ 232 (397)
T 1sq9_A 156 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINN 232 (397)
T ss_dssp ESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CC
T ss_pred CccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCceeEEEecccccccc
Confidence 66 66666 77 44899999999965 55 999999999999999999888888887 7
Q ss_pred CccEEEEEEecCCCeEEEeeecCCCC---cEEEEeeCCCCceeEEEec-------------ccCceeEEEEEcCCCCEEE
Q 001184 541 GLWCTTMLYSADGSRLFSCGTSKEGD---SHLVEWNESEGALKRTYIG-------------FRKKSAGVVQFDTTRNRIL 604 (1130)
Q Consensus 541 ~~~v~~~~~s~~~~~l~~~~~~~~~~---~~i~~wd~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~l~ 604 (1130)
...+.+++|+|++++|++++. + +.|++||+.+++.+..+.+ |.. .+.+++|+|++++|+
T Consensus 233 ~~~i~~i~~~~~~~~l~~~~~----d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~ 307 (397)
T 1sq9_A 233 SNSIRSVKFSPQGSLLAIAHD----SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-WVMSLSFNDSGETLC 307 (397)
T ss_dssp CCCEEEEEECSSTTEEEEEEE----ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS-CEEEEEECSSSSEEE
T ss_pred CCccceEEECCCCCEEEEEec----CCCCceEEEEECCCCcccceeccCcccccccccccccCC-cEEEEEECCCCCEEE
Confidence 889999999999999999986 7 8999999999999999987 555 899999999999999
Q ss_pred EEeCCCcEEEEeCCCCceeEEEe------cc-------------CCCCCcceEEEcCCC----------CEEEEEeCCCc
Q 001184 605 AAGEDNQIKFWDMDNVNMLTSTE------AE-------------GGLPSLPRLRFNKEG----------NLLVVTTADQG 655 (1130)
Q Consensus 605 ~~~~dg~i~vwd~~~~~~~~~~~------~~-------------~~~~~i~~v~~s~~~----------~~l~~~~~dg~ 655 (1130)
+++.||.|++||+.+++.+..+. .+ .+...|.+++|+|++ ++|++++.||.
T Consensus 308 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~ 387 (397)
T 1sq9_A 308 SAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRS 387 (397)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTE
T ss_pred EEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCc
Confidence 99999999999999999999888 43 014589999999998 79999999999
Q ss_pred EEEEEcCCC
Q 001184 656 IKILANADG 664 (1130)
Q Consensus 656 i~iw~~~~~ 664 (1130)
|++|++.++
T Consensus 388 i~iw~~~~g 396 (397)
T 1sq9_A 388 IRWFREAGG 396 (397)
T ss_dssp EEEEEEEC-
T ss_pred EEEEEcCCC
Confidence 999998765
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=319.21 Aligned_cols=276 Identities=19% Similarity=0.301 Sum_probs=241.6
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCE
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 423 (1130)
.+|.+.|.. +++++|+ +|++|+.||+|+|||+.+++.+. .+.+|.+.|.+++|+ +++
T Consensus 115 ~~h~~~v~~-~~~~~g~-~l~sg~~dg~i~vwd~~~~~~~~-------------------~~~~h~~~v~~~~~~--~~~ 171 (445)
T 2ovr_B 115 KGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLR-------------------TLVGHTGGVWSSQMR--DNI 171 (445)
T ss_dssp ECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEE-------------------ECCCCSSCEEEEEEE--TTE
T ss_pred cccCCCcEE-EEEEcCC-EEEEEECCCcEEEEECCCCcEEE-------------------EEcCCCCCEEEEEec--CCE
Confidence 358877543 3556687 59999999999999999988765 477999999999998 679
Q ss_pred EEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEE
Q 001184 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYS 502 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~ 502 (1130)
|++|+.||+|++||+.+++.+. .+.+|...|.+++|+ ++ .+++|+.|++|++|| .+++.+..+.+|...|.+
T Consensus 172 l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~ 244 (445)
T 2ovr_B 172 IISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC 244 (445)
T ss_dssp EEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEE
T ss_pred EEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEE
Confidence 9999999999999999987554 678999999999996 45 799999999999999 889999999999999999
Q ss_pred EeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEE
Q 001184 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582 (1130)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1130)
+++ ++.++++++.||.|++||+++......+..+...|.++.| ++.++++++. ++.|++||+.+++.+..
T Consensus 245 ~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~----d~~i~i~d~~~~~~~~~ 314 (445)
T 2ovr_B 245 VQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL----DTSIRVWDVETGNCIHT 314 (445)
T ss_dssp EEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET----TSCEEEEETTTCCEEEE
T ss_pred EEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC----CCeEEEEECCCCCEEEE
Confidence 988 4578999999999999999999988899999999999999 8899999986 89999999999999999
Q ss_pred EecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccC-CCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 583 YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEG-GLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
+.+|.. .+.++.+ +++++++|+.||.|++||+.+++.+..+..+. +...|.+++|+ ++++++++.||.|++||+
T Consensus 315 ~~~~~~-~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 315 LTGHQS-LTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp ECCCCS-CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred EcCCcc-cEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEEC
Confidence 988765 6666666 56799999999999999999999998887632 45578999996 679999999999999999
Q ss_pred CCC
Q 001184 662 ADG 664 (1130)
Q Consensus 662 ~~~ 664 (1130)
.++
T Consensus 390 ~~~ 392 (445)
T 2ovr_B 390 KTG 392 (445)
T ss_dssp TTC
T ss_pred CCC
Confidence 876
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=322.33 Aligned_cols=279 Identities=18% Similarity=0.252 Sum_probs=242.3
Q ss_pred eccCCCCE-EEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCC
Q 001184 343 TMHQGSSV-VSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1130)
Q Consensus 343 ~~~h~~~V-~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 421 (1130)
..+|...| .++.| +++ +|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+|++
T Consensus 117 l~~h~~~v~~~~~~--~~~-~l~sgs~dg~i~vwd~~~~~~~~-------------------~~~~h~~~V~~l~~~~~~ 174 (464)
T 3v7d_B 117 LRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLL-------------------QLSGHDGGVWALKYAHGG 174 (464)
T ss_dssp EECCSSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEE-------------------EECCCSSCEEEEEECSTT
T ss_pred EcCCCCCcEEEEEE--CCC-EEEEEcCCCcEEEEECCCCcEEE-------------------EEeCCCcCEEEEEEcCCC
Confidence 34587775 66666 455 69999999999999999988765 477999999999999998
Q ss_pred CEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEec--CCCceEEEEEcCCCcEEEEe-cCCC----------
Q 001184 422 NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY--PNKQLCIVTCGDDKLIRVWD-LSGR---------- 488 (1130)
Q Consensus 422 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~--d~~~l~l~s~s~d~~v~iwd-~~~~---------- 488 (1130)
+|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|++ ++. ++++|+.|++|++|| .++.
T Consensus 175 -~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~ 248 (464)
T 3v7d_B 175 -ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGEEHD 248 (464)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC------CC
T ss_pred -EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCcccccccccCC
Confidence 99999999999999999987554 6789999999999995 556 899999999999999 4443
Q ss_pred -------------eeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCe
Q 001184 489 -------------KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSR 555 (1130)
Q Consensus 489 -------------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 555 (1130)
.+..+.+|...|.++.. ++.++++++.||.|++||+++.+....+..|...|.+++|+|++++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 324 (464)
T 3v7d_B 249 YPLVFHTPEENPYFVGVLRGHMASVRTVSG----HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKR 324 (464)
T ss_dssp SSEEESCGGGCTTEEEEECCCSSCEEEEEE----ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTE
T ss_pred cceEeeccCCCeEEEEEccCccceEEEEcC----CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCE
Confidence 25567889999998843 4579999999999999999999999999999999999999999999
Q ss_pred EEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCc
Q 001184 556 LFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSL 635 (1130)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i 635 (1130)
+++++. ++.|++||+.+++.+..+.+|.. .+.+++++ ++++++++.||.|++||+.++......... ..+
T Consensus 325 l~sg~~----dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~---~~~ 394 (464)
T 3v7d_B 325 CISASM----DTTIRIWDLENGELMYTLQGHTA-LVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHT---NLS 394 (464)
T ss_dssp EEEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECT---TCC
T ss_pred EEEEeC----CCcEEEEECCCCcEEEEEeCCCC-cEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCC---CCc
Confidence 999986 89999999999999999998766 78899987 589999999999999999998776665422 257
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 636 PRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 636 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
..++|+++++++++++ ||.|++||+.++
T Consensus 395 ~~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 395 AITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp CEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred cEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 8889999999999998 899999999877
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=308.91 Aligned_cols=299 Identities=20% Similarity=0.314 Sum_probs=245.7
Q ss_pred eecCCCccEEEEEEcCC-CCEEEEEeCCCeEEEEEecCCccc--eeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcE
Q 001184 404 IVKDSSISVSRVAWSPD-GNFIGVAFTKHLIHLYTYQGSNDL--CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spd-g~~las~~~d~~i~vwd~~~~~~~--~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v 480 (1130)
+++||.+.|++|+|+|+ +++||+|+.|++|+|||+.+++.. .....+.+|...|.+++|+|+++ +|++++.|+.|
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~--~l~s~~~d~~i 110 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALSGSWDGTL 110 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC--EEEEEcccccc
Confidence 58899999999999997 689999999999999999876532 23446789999999999999999 89999999999
Q ss_pred EEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCccee-eecCCCccEEEEEEecCC--CeE
Q 001184 481 RVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV-DYDAPGLWCTTMLYSADG--SRL 556 (1130)
Q Consensus 481 ~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~~~--~~l 556 (1130)
++|+ ..+........+...+..+.+.+ ++.+|++++.|+.+++||........ ....+...+..++|++++ .++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 188 (340)
T 4aow_A 111 RLWDLTTGTTTRRFVGHTKDVLSVAFSS--DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII 188 (340)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEE
T ss_pred eEEeecccceeeeecCCCCceeEEEEee--cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEE
Confidence 9999 77777778888888888888754 45789999999999999987665443 455677889999999875 456
Q ss_pred EEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcc
Q 001184 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLP 636 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~ 636 (1130)
++++. ++.|++||..+++.+..+.+|.. .|.+++|+|++++|++|+.||.|++||+.+.+.+..+..+. .+.
T Consensus 189 ~s~~~----d~~i~i~d~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~---~v~ 260 (340)
T 4aow_A 189 VSCGW----DKLVKVWNLANCKLKTNHIGHTG-YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD---IIN 260 (340)
T ss_dssp EEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSS---CEE
T ss_pred EEEcC----CCEEEEEECCCCceeeEecCCCC-cEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCc---eEE
Confidence 66664 88999999999999999998766 89999999999999999999999999999999988887553 689
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcc
Q 001184 637 RLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPST 716 (1130)
Q Consensus 637 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~ 716 (1130)
++.|+|++.++ +++.|+.|++||+..+. ....+.....
T Consensus 261 ~~~~~~~~~~~-~~~~d~~i~iwd~~~~~-~~~~~~~~~~---------------------------------------- 298 (340)
T 4aow_A 261 ALCFSPNRYWL-CAATGPSIKIWDLEGKI-IVDELKQEVI---------------------------------------- 298 (340)
T ss_dssp EEEECSSSSEE-EEEETTEEEEEETTTTE-EEEEECCC------------------------------------------
T ss_pred eeecCCCCcee-eccCCCEEEEEECCCCe-EEEeccccce----------------------------------------
Confidence 99999988655 56679999999987652 1111110000
Q ss_pred cccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeec
Q 001184 717 ILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKW 796 (1130)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~ 796 (1130)
. .....|...|.+++|+|+|+.|++++.||.|++|++
T Consensus 299 ----------------------------------------~---~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~ 335 (340)
T 4aow_A 299 ----------------------------------------S---TSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335 (340)
T ss_dssp ------------------------------------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred ----------------------------------------e---eeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 0 000237889999999999999999999999999997
Q ss_pred CCC
Q 001184 797 NRT 799 (1130)
Q Consensus 797 ~~~ 799 (1130)
.++
T Consensus 336 ~tG 338 (340)
T 4aow_A 336 TIG 338 (340)
T ss_dssp EC-
T ss_pred CCc
Confidence 654
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=323.01 Aligned_cols=320 Identities=19% Similarity=0.323 Sum_probs=270.3
Q ss_pred eecCCCccE-EEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001184 404 IVKDSSISV-SRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRV 482 (1130)
Q Consensus 404 ~~~~h~~~V-~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~i 482 (1130)
.+.+|...| .++.+ ++++|++|+.||+|++||+.+++.+. .+.+|.+.|++++|++++ .+++|+.|++|++
T Consensus 116 ~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~---~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~v 187 (464)
T 3v7d_B 116 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRV 187 (464)
T ss_dssp EEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECSTT---EEEEEETTSCEEE
T ss_pred EEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE---EEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEE
Confidence 467888775 66665 67899999999999999999987554 678999999999999887 5899999999999
Q ss_pred Ee-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcce-----------------------eeec
Q 001184 483 WD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR-----------------------VDYD 538 (1130)
Q Consensus 483 wd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-----------------------~~~~ 538 (1130)
|| .+++.+..+.+|...|.+++|.+.+++.++++++.||.|++||+++.... ..+.
T Consensus 188 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
T 3v7d_B 188 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 267 (464)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred EECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence 99 88999999999999999999998888899999999999999999876532 2455
Q ss_pred CCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001184 539 APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMD 618 (1130)
Q Consensus 539 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 618 (1130)
.+...+.++ +++++++++++. ++.|++||+.+++.+..+.+|.. .+.+++|+|+++++++|+.||.|++||+.
T Consensus 268 ~~~~~v~~~--~~~~~~l~~~~~----d~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~sg~~dg~i~vwd~~ 340 (464)
T 3v7d_B 268 GHMASVRTV--SGHGNIVVSGSY----DNTLIVWDVAQMKCLYILSGHTD-RIYSTIYDHERKRCISASMDTTIRIWDLE 340 (464)
T ss_dssp CCSSCEEEE--EEETTEEEEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred CccceEEEE--cCCCCEEEEEeC----CCeEEEEECCCCcEEEEecCCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence 566666665 788999999986 89999999999999999998766 89999999999999999999999999999
Q ss_pred CCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeecccc
Q 001184 619 NVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITP 698 (1130)
Q Consensus 619 ~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 698 (1130)
+++.+..+..+.. .|.+++|+ +.++++++.||.|++||+.++...
T Consensus 341 ~~~~~~~~~~h~~--~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~------------------------------- 385 (464)
T 3v7d_B 341 NGELMYTLQGHTA--LVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK------------------------------- 385 (464)
T ss_dssp TTEEEEEECCCSS--CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE-------------------------------
T ss_pred CCcEEEEEeCCCC--cEEEEEEc--CCEEEEEeCCCcEEEEECCCCcee-------------------------------
Confidence 9999998876654 78999997 579999999999999998654100
Q ss_pred ccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEecc
Q 001184 699 VLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNS 778 (1130)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 778 (1130)
T Consensus 386 -------------------------------------------------------------------------------- 385 (464)
T 3v7d_B 386 -------------------------------------------------------------------------------- 385 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEE
Q 001184 779 GIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSL 858 (1130)
Q Consensus 779 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~i 858 (1130)
... .+...+..++++++++++++++||.|++
T Consensus 386 ----~~~---------------------------------------------~~~~~~~~~~~~~~~~~l~~~~dg~i~i 416 (464)
T 3v7d_B 386 ----FSY---------------------------------------------HHTNLSAITTFYVSDNILVSGSENQFNI 416 (464)
T ss_dssp ----EEE---------------------------------------------ECTTCCCEEEEEECSSEEEEEETTEEEE
T ss_pred ----eee---------------------------------------------cCCCCccEEEEEeCCCEEEEecCCeEEE
Confidence 000 1234456788999999999999999999
Q ss_pred EECCCceeEEE-EeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEe
Q 001184 859 FNMMNFKVMTT-FMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNV 904 (1130)
Q Consensus 859 wd~~~~~~~~~-~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~ 904 (1130)
||+.+++.+.. +..|...|.+++|+ ++.++++++.||.+.+|-+
T Consensus 417 wd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 417 YNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp EETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEETTEEEEEEE
T ss_pred EECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeCCeEEEEEe
Confidence 99999999886 56788899999997 4677777788887666544
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-32 Score=317.90 Aligned_cols=316 Identities=19% Similarity=0.331 Sum_probs=272.2
Q ss_pred eeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEE
Q 001184 449 EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWL 527 (1130)
Q Consensus 449 ~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd 527 (1130)
.+.+|.+.|.. +++++++ ++++|+.||+|++|| .+++.+..+.+|...|.+++|+ +.++++++.||+|++||
T Consensus 113 ~l~~h~~~v~~-~~~~~g~--~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 113 VLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR----DNIIISGSTDRTLKVWN 185 (445)
T ss_dssp EEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE----TTEEEEEETTSCEEEEE
T ss_pred EecccCCCcEE-EEEEcCC--EEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec----CCEEEEEeCCCeEEEEE
Confidence 57889887533 3555677 899999999999999 8899999999999999999985 36899999999999999
Q ss_pred ccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEe
Q 001184 528 YDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG 607 (1130)
Q Consensus 528 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 607 (1130)
+.+++....+..|...|.++.|+ ++.+++++. ++.|++||+.+++.+..+.+|.. .+.++.+ +++++++|+
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~----dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~ 256 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR----DATLRVWDIETGQCLHVLMGHVA-AVRCVQY--DGRRVVSGA 256 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET----TSEEEEEESSSCCEEEEEECCSS-CEEEEEE--CSSCEEEEE
T ss_pred CCcCcEEEEECCCCCcEEEEEec--CCEEEEEeC----CCEEEEEECCCCcEEEEEcCCcc-cEEEEEE--CCCEEEEEc
Confidence 99999888999999999999995 567888886 89999999999999999998766 7888888 788999999
Q ss_pred CCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccc
Q 001184 608 EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKV 687 (1130)
Q Consensus 608 ~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1130)
.||.|++||+.+++.+..+..+.. .|.++.| ++.++++++.|+.|++||+.++. ....
T Consensus 257 ~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~-~~~~----------------- 314 (445)
T 2ovr_B 257 YDFMVKVWDPETETCLHTLQGHTN--RVYSLQF--DGIHVVSGSLDTSIRVWDVETGN-CIHT----------------- 314 (445)
T ss_dssp TTSCEEEEEGGGTEEEEEECCCSS--CEEEEEE--CSSEEEEEETTSCEEEEETTTCC-EEEE-----------------
T ss_pred CCCEEEEEECCCCcEeEEecCCCC--ceEEEEE--CCCEEEEEeCCCeEEEEECCCCC-EEEE-----------------
Confidence 999999999999999888876544 7899998 78899999999999999986541 0000
Q ss_pred cccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCc
Q 001184 688 PGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSA 767 (1130)
Q Consensus 688 ~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 767 (1130)
T Consensus 315 -------------------------------------------------------------------------------- 314 (445)
T 2ovr_B 315 -------------------------------------------------------------------------------- 314 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCE
Q 001184 768 SKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSY 847 (1130)
Q Consensus 768 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~ 847 (1130)
+ .+|...+.++.+ ++++
T Consensus 315 --------------------------~-----------------------------------~~~~~~v~~~~~--~~~~ 331 (445)
T 2ovr_B 315 --------------------------L-----------------------------------TGHQSLTSGMEL--KDNI 331 (445)
T ss_dssp --------------------------E-----------------------------------CCCCSCEEEEEE--ETTE
T ss_pred --------------------------E-----------------------------------cCCcccEEEEEE--eCCE
Confidence 0 024455566655 4668
Q ss_pred EEEEe-CCeEEEEECCCceeEEEEeC---CCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEE-----ecCCC
Q 001184 848 VMSAG-GGKVSLFNMMNFKVMTTFMS---PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKL-----KGHQK 918 (1130)
Q Consensus 848 la~~~-dg~i~iwd~~~~~~~~~~~~---~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l-----~~h~~ 918 (1130)
+++++ ||.|++||+.+++.+..+.. |...|.+++|++ .+|++|+.||.|++||+.+++.+..+ .+|.+
T Consensus 332 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 408 (445)
T 2ovr_B 332 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG 408 (445)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTC
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCc
Confidence 88887 89999999999999999986 788899999954 69999999999999999999999888 47889
Q ss_pred CeeEEEEccCCCeEEEEeCCCc----EEEEECCC
Q 001184 919 HITGLAFSTNLNILVSSGSDAQ----LIFWNTDT 948 (1130)
Q Consensus 919 ~V~~l~~s~dg~~L~s~s~Dg~----i~vwd~~~ 948 (1130)
.|++++|+|++.+|++++.||+ |.+||++.
T Consensus 409 ~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 409 VVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred eEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 9999999999999999999998 99999986
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-33 Score=316.87 Aligned_cols=293 Identities=15% Similarity=0.103 Sum_probs=245.7
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCc--eeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRE--RLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 423 (1130)
|.+.|++++|+|+|+ +|++|+.|+.|+|||+.+++ .+. .+.+|...|.+++|+|++++
T Consensus 7 ~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~ 66 (372)
T 1k8k_C 7 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVH-------------------ELKEHNGQVTGVDWAPDSNR 66 (372)
T ss_dssp CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEE-------------------EEECCSSCEEEEEEETTTTE
T ss_pred cCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeee-------------------eecCCCCcccEEEEeCCCCE
Confidence 889999999999998 58999999999999999876 332 46789999999999999999
Q ss_pred EEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCe---e-eEecCCCc
Q 001184 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRK---L-FQFEGHEA 498 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~---~-~~~~~h~~ 498 (1130)
|++++.|+.|++||+.+++... ...+.+|...|.+++|+|+++ ++++++.|+.|++|| ..+.. . ....+|..
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred EEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence 9999999999999998876332 334578999999999999999 899999999999999 55542 2 33467899
Q ss_pred CEEEEeecccCCccEEEEEecCCcEEEEEcc------------------CCcceeeecCCCccEEEEEEecCCCeEEEee
Q 001184 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYD------------------NVGSRVDYDAPGLWCTTMLYSADGSRLFSCG 560 (1130)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1130)
.|.+++|++ ++.+|++++.||.|++||++ .......+..+...+.+++|+|++++|++++
T Consensus 144 ~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 221 (372)
T 1k8k_C 144 TVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 221 (372)
T ss_dssp CEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred CeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe
Confidence 999999976 55799999999999999954 4566667778888999999999999999998
Q ss_pred ecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCC--CceeE--E-----------
Q 001184 561 TSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN--VNMLT--S----------- 625 (1130)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~--~----------- 625 (1130)
. ++.|++||+.+++.+..+..|.. .+.+++|+|++.+++++ .|+.|++|++.+ ++... .
T Consensus 222 ~----d~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (372)
T 1k8k_C 222 H----DSTVCLADADKKMAVATLASETL-PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 295 (372)
T ss_dssp T----TTEEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-------
T ss_pred C----CCEEEEEECCCCceeEEEccCCC-CeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhh
Confidence 6 89999999999999999998755 79999999999877777 899999999987 42100 0
Q ss_pred -----------------------Eec-cCCCCCcceEEEc-CCC---CEEEEEeCCCcEEEEEcCCCchhhh
Q 001184 626 -----------------------TEA-EGGLPSLPRLRFN-KEG---NLLVVTTADQGIKILANADGLRALR 669 (1130)
Q Consensus 626 -----------------------~~~-~~~~~~i~~v~~s-~~~---~~l~~~~~dg~i~iw~~~~~~~~~~ 669 (1130)
... .++...|.+++|+ ++| .+|++++.||.|++|++.++.+.+.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~~~ 367 (372)
T 1k8k_C 296 LTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALK 367 (372)
T ss_dssp -CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHHCT
T ss_pred cchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHhhh
Confidence 111 2455689999866 676 9999999999999999977644433
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-33 Score=316.60 Aligned_cols=289 Identities=12% Similarity=0.202 Sum_probs=240.5
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeC---cCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC-
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCG---DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD- 420 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd- 420 (1130)
+|...|++++|+|++++++++|+. ||.|+|||+.+++.... ...+|...|.+++|+|+
T Consensus 16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~------------------~~~~~~~~v~~~~~~~~~ 77 (357)
T 3i2n_A 16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL------------------REIEKAKPIKCGTFGATS 77 (357)
T ss_dssp ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE------------------EEEEESSCEEEEECTTCC
T ss_pred CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce------------------eeecccCcEEEEEEcCCC
Confidence 499999999999999878888887 99999999998876531 23378899999999999
Q ss_pred --CCEEEEEeCCCeEEEEEecCCc-cceeeeeeecCCCCeeEEEE------ecCCCceEEEEEcCCCcEEEEe-cCCC-e
Q 001184 421 --GNFIGVAFTKHLIHLYTYQGSN-DLCQSLEIDAHVGGVNDLAF------SYPNKQLCIVTCGDDKLIRVWD-LSGR-K 489 (1130)
Q Consensus 421 --g~~las~~~d~~i~vwd~~~~~-~~~~~~~~~~h~~~V~~i~~------s~d~~~l~l~s~s~d~~v~iwd-~~~~-~ 489 (1130)
|++|++|+.||.|++||+.+++ .+. .+.+|...|.+++| +|+++ +|++++.|+.|++|| .+++ .
T Consensus 78 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vwd~~~~~~~ 152 (357)
T 3i2n_A 78 LQQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVWDPRQKDDP 152 (357)
T ss_dssp TTTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEECTTSCSSC
T ss_pred CCCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEEeCCCCCCc
Confidence 7999999999999999999886 333 57899999999955 67888 899999999999999 6665 6
Q ss_pred eeEecCCCc----CEEEEeecc--cCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEec---CCCeEEEee
Q 001184 490 LFQFEGHEA----PVYSVCPHQ--KENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSA---DGSRLFSCG 560 (1130)
Q Consensus 490 ~~~~~~h~~----~v~~~~~~~--~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~ 560 (1130)
+..+..|.+ .+.+++|.+ ++++.++++++.||.|++||+++...... ..+...+.+++|+| +++++++++
T Consensus 153 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~ 231 (357)
T 3i2n_A 153 VANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATS 231 (357)
T ss_dssp SEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEE
T ss_pred ceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEEC
Confidence 777776655 888888432 45678999999999999999998776443 45677899999999 999999998
Q ss_pred ecCCCCcEEEEeeCCCCceeEEEe-----cccCceeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCc-------------
Q 001184 561 TSKEGDSHLVEWNESEGALKRTYI-----GFRKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDNVN------------- 621 (1130)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~------------- 621 (1130)
. ++.|++||+++++....+. +|.. .+.+++|+|+++ ++++++.||.|++||+..+.
T Consensus 232 ~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~ 306 (357)
T 3i2n_A 232 L----EGKFHVFDMRTQHPTKGFASVSEKAHKS-TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMG 306 (357)
T ss_dssp S----TTEEEEEEEEEEETTTEEEEEEEECCSS-CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCC
T ss_pred C----CCeEEEEeCcCCCcccceeeeccCCCcC-CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccc
Confidence 6 8999999998877665554 6554 899999999998 89999999999999997643
Q ss_pred ------eeEEEeccCCCCCcceEEEcCCCCEEE-EEeCCCcEEEEEcCCC
Q 001184 622 ------MLTSTEAEGGLPSLPRLRFNKEGNLLV-VTTADQGIKILANADG 664 (1130)
Q Consensus 622 ------~~~~~~~~~~~~~i~~v~~s~~~~~l~-~~~~dg~i~iw~~~~~ 664 (1130)
.+..+..+ ...|.+++|+|++++|+ +++.|+.|++|++.+.
T Consensus 307 ~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 307 VAGSVSLLQNVTLS--TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CCCEEEEEEEEECC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred cccccceeeccccC--CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 34445544 44899999999999998 7999999999998765
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=319.29 Aligned_cols=290 Identities=15% Similarity=0.244 Sum_probs=242.8
Q ss_pred cCCCCEEEEEEecC---CCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC-
Q 001184 345 HQGSSVVSMDFHPF---HHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD- 420 (1130)
Q Consensus 345 ~h~~~V~~v~fspd---g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd- 420 (1130)
+|...|++++|+|+ +..++++++.++.|+|||+.+++.+.. + .......|...|.+++|+|+
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~--~------------~~~~~~~~~~~v~~~~~~~~~ 81 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL--L------------QSYVDADADENFYTCAWTYDS 81 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE--E------------EEEECSCTTCCEEEEEEEECT
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe--e------------eeccccCCCCcEEEEEeccCC
Confidence 59999999999995 444566666677999999998776542 1 11112347789999999999
Q ss_pred ---CCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEec-CCCceEEEEEcCCCcEEEEe-cCCCeeeEe--
Q 001184 421 ---GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY-PNKQLCIVTCGDDKLIRVWD-LSGRKLFQF-- 493 (1130)
Q Consensus 421 ---g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~-d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~-- 493 (1130)
|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+| ++. +|++++.|+.|++|| .+++.+..+
T Consensus 82 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~ 156 (366)
T 3k26_A 82 NTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGG 156 (366)
T ss_dssp TTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred CCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEecc
Confidence 6799999999999999999887554 5788999999999999 777 899999999999999 778888887
Q ss_pred -cCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeec----------------------------CCCccE
Q 001184 494 -EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD----------------------------APGLWC 544 (1130)
Q Consensus 494 -~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~----------------------------~~~~~v 544 (1130)
.+|...|.+++|++ ++.+|++++.||.|++||+++......+. .+...|
T Consensus 157 ~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 234 (366)
T 3k26_A 157 VEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYV 234 (366)
T ss_dssp TTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCC
T ss_pred cccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceE
Confidence 78999999999976 55799999999999999998765443322 277889
Q ss_pred EEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCce--------------eEEEecccCceeEEEEEcCC--CCEEEEEeC
Q 001184 545 TTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL--------------KRTYIGFRKKSAGVVQFDTT--RNRILAAGE 608 (1130)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--------------~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~ 608 (1130)
.+++|+ ++++++++. ++.|++||+.++.. +..+.+|.. .+.+++|+|+ +++|++|+.
T Consensus 235 ~~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~~l~~~~~ 307 (366)
T 3k26_A 235 DCVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC-DIWYMRFSMDFWQKMLALGNQ 307 (366)
T ss_dssp CEEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC-CSSCCCCEECTTSSEEEEECT
T ss_pred EEEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccCC-cEEEEEEcCCCCCcEEEEEec
Confidence 999999 778998876 89999999987644 677777655 7889999999 999999999
Q ss_pred CCcEEEEeCCCCce----eEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001184 609 DNQIKFWDMDNVNM----LTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANA 662 (1130)
Q Consensus 609 dg~i~vwd~~~~~~----~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~ 662 (1130)
||.|++||+.+++. ...+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus 308 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 308 VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 99999999998763 3466666445689999999999999999999999999975
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=323.42 Aligned_cols=352 Identities=14% Similarity=0.162 Sum_probs=248.3
Q ss_pred CcEEEEeeCCCCceeEEEecccCceeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeEEEec-----------cCCCC
Q 001184 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT-TRNRILAAGEDNQIKFWDMDNVNMLTSTEA-----------EGGLP 633 (1130)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----------~~~~~ 633 (1130)
+..+++|+...++....+.+|.. .|.+++|+| ++++|++|+.||.|++||+.+++....+.. ..+..
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGG-GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY 100 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSS-CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred cCcceeeccccCcceeeeeccCC-cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence 45577888888888888888765 899999999 999999999999999999998765544431 12455
Q ss_pred CcceEEEcC-CCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCC
Q 001184 634 SLPRLRFNK-EGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPA 712 (1130)
Q Consensus 634 ~i~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~ 712 (1130)
.|.+++|+| ++.++++++.||.|++||+.++.. ...
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~------------------------------------------ 137 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT-ADV------------------------------------------ 137 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE-EEE------------------------------------------
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc-cee------------------------------------------
Confidence 899999999 788999999999999999865410 000
Q ss_pred CCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEE
Q 001184 713 RPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQK 792 (1130)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~ 792 (1130)
T Consensus 138 -------------------------------------------------------------------------------- 137 (408)
T 4a11_B 138 -------------------------------------------------------------------------------- 137 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEec---CCCEEEEEe-CCeEEEEECCCceeEE
Q 001184 793 LWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSK---NDSYVMSAG-GGKVSLFNMMNFKVMT 868 (1130)
Q Consensus 793 iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~---dg~~la~~~-dg~i~iwd~~~~~~~~ 868 (1130)
+ .+...+.++++++ ++.++++++ +|.|++||+.+++.+.
T Consensus 138 -~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 180 (408)
T 4a11_B 138 -F------------------------------------NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH 180 (408)
T ss_dssp -E------------------------------------ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCE
T ss_pred -c------------------------------------cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceee
Confidence 0 0233445555655 455888887 8999999999999999
Q ss_pred EEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCe-EEEEE---------------ecCCCCeeEEEEccCCCeE
Q 001184 869 TFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE-VKTKL---------------KGHQKHITGLAFSTNLNIL 932 (1130)
Q Consensus 869 ~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~-~~~~l---------------~~h~~~V~~l~~s~dg~~L 932 (1130)
.+..|...|.+++|+|++..++++|+.||.|++||+.++. .+..+ .+|...|.+++|+|++++|
T Consensus 181 ~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 260 (408)
T 4a11_B 181 ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHL 260 (408)
T ss_dssp EECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEE
T ss_pred eecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEE
Confidence 9999999999999999444479999999999999998764 44444 5789999999999999999
Q ss_pred EEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCe
Q 001184 933 VSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPI 1012 (1130)
Q Consensus 933 ~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v 1012 (1130)
++++.||.|++||+.+++..........................+.+++++.++.+++||+.+++.+..+..| ...|
T Consensus 261 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~v 337 (408)
T 4a11_B 261 LTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH---YKTV 337 (408)
T ss_dssp EEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCC---SSCE
T ss_pred EEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccC---CCeE
Confidence 9999999999999998765433222222222222333444455677777789999999999999999998766 7899
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 001184 1013 SSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEP 1092 (1130)
Q Consensus 1013 ~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~ 1092 (1130)
++++|+|++++|++++.||.|++||+.+++.+....... ....+.+.....+.+++.|+.+++|+.
T Consensus 338 ~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~W~~ 403 (408)
T 4a11_B 338 DCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETT--------------TKSQLNPAFEDAWSSSDEEGGTSAWSH 403 (408)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEEECC----------------------------------------------------
T ss_pred EEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceE--------------eccccccccceeecccCccCceeecCC
Confidence 999999999999999999999999999998765544211 112233444567778888999999987
Q ss_pred CCC
Q 001184 1093 SET 1095 (1130)
Q Consensus 1093 ~~~ 1095 (1130)
..-
T Consensus 404 ~~~ 406 (408)
T 4a11_B 404 PQF 406 (408)
T ss_dssp ---
T ss_pred ccc
Confidence 643
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=304.42 Aligned_cols=320 Identities=17% Similarity=0.235 Sum_probs=263.6
Q ss_pred eeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEE
Q 001184 534 RVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIK 613 (1130)
Q Consensus 534 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 613 (1130)
...+.+|...|++++|+|++++|++++. ++.|++||+.+++.+..+.+|.. .+.+++|+|++++|++++.||.|+
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~----dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~~~dg~i~ 99 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSK----DSSASVWYSLNGERLGTLDGHTG-TIWSIDVDCFTKYCVTGSADYSIK 99 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEES----SSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTTEEE
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeC----CCEEEEEeCCCchhhhhhhhcCC-cEEEEEEcCCCCEEEEEeCCCeEE
Confidence 3457789999999999999999999986 89999999999999999998766 899999999999999999999999
Q ss_pred EEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCC-----CcEEEEEcCCCchhhhhhccccccccccccccccc
Q 001184 614 FWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD-----QGIKILANADGLRALRAIETRAYETSRASTEMKVP 688 (1130)
Q Consensus 614 vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1130)
+||+.+++.+..+.. ...+.+++|+|+++++++++.+ +.|++|++...... ..+..
T Consensus 100 iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~-~~~~~--------------- 160 (369)
T 3zwl_B 100 LWDVSNGQCVATWKS---PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSAT-HELTK--------------- 160 (369)
T ss_dssp EEETTTCCEEEEEEC---SSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTT-CCEEE---------------
T ss_pred EEECCCCcEEEEeec---CCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccc-eeecc---------------
Confidence 999999999888873 2379999999999999999999 99999998655110 00000
Q ss_pred ccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCcc
Q 001184 689 GSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSAS 768 (1130)
Q Consensus 689 ~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 768 (1130)
. ...
T Consensus 161 ----------------------------------------------------------~------------------~~~ 164 (369)
T 3zwl_B 161 ----------------------------------------------------------V------------------SEE 164 (369)
T ss_dssp ----------------------------------------------------------E------------------CSS
T ss_pred ----------------------------------------------------------c------------------ccc
Confidence 0 000
Q ss_pred ceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCC--CCceeEEEEecCCC
Q 001184 769 KVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENA--EDVVPCVALSKNDS 846 (1130)
Q Consensus 769 ~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~--~~~i~~l~~s~dg~ 846 (1130)
.+ ..+ ..+ ...+.+++|+|+++
T Consensus 165 ~~--------------------~~~------------------------------------~~~~~~~~~~~~~~~~~~~ 188 (369)
T 3zwl_B 165 PI--------------------HKI------------------------------------ITHEGLDAATVAGWSTKGK 188 (369)
T ss_dssp CS--------------------EEE------------------------------------ECCTTCCCEEEEEECGGGC
T ss_pred ee--------------------eec------------------------------------cCCcCccceeEEEEcCCCC
Confidence 00 000 012 33789999999999
Q ss_pred EEEEEe-CCeEEEEECCC-ceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEE
Q 001184 847 YVMSAG-GGKVSLFNMMN-FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLA 924 (1130)
Q Consensus 847 ~la~~~-dg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~ 924 (1130)
++++++ +|.|++||+.+ ++.+..+..|...|.+++|+| ++.+|++++.||.|++||+.+++.+..+. +...+.+++
T Consensus 189 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~ 266 (369)
T 3zwl_B 189 YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAV 266 (369)
T ss_dssp EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECC-CCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEE
Confidence 999988 89999999998 788999999999999999999 89999999999999999999999988888 778899999
Q ss_pred EccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeec
Q 001184 925 FSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVP 1004 (1130)
Q Consensus 925 ~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~ 1004 (1130)
|+|+++++++++.++...+|...... ....+++||..+++.+..+..
T Consensus 267 ~~~~~~~l~~~~~~~~~~~~~~~~~~---------------------------------~~~~i~~~d~~~~~~~~~~~~ 313 (369)
T 3zwl_B 267 ITPLKEFIILGGGQEAKDVTTTSANE---------------------------------GKFEARFYHKIFEEEIGRVQG 313 (369)
T ss_dssp ECSSSSEEEEEECCC----------------------------------------------CEEEEEETTTCCEEEEEEC
T ss_pred ecCCCceEEEeecCCCceEEEEecCC---------------------------------CcceeEEEecCCCcchhheec
Confidence 99999999999999988777655411 123689999999999998877
Q ss_pred CCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCccccccc
Q 001184 1005 QDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRI 1047 (1130)
Q Consensus 1005 ~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~ 1047 (1130)
+ ...|++++|+||+++|++++.||.|++|++.++.....+
T Consensus 314 ~---~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 353 (369)
T 3zwl_B 314 H---FGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKY 353 (369)
T ss_dssp C---SSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTCCC
T ss_pred c---cCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchhHH
Confidence 6 789999999999999999999999999999987655444
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=311.10 Aligned_cols=300 Identities=14% Similarity=0.120 Sum_probs=229.3
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcC-------eEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEc
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDG-------EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 418 (1130)
-+.+|+|++|+|||+ +||+|+.+. .|+||++..+.......+. ......+.+|...|.+++++
T Consensus 13 ~g~PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~---------~~~~~~l~~~~~~v~s~~~~ 82 (365)
T 4h5i_A 13 VGYPAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH---------ILSEFALEDNDDSPTAIDAS 82 (365)
T ss_dssp CSSCEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE---------EEEEEECCTTSCCCCEEEEE
T ss_pred CCCCEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeeee---------eeeEEEccCCCCceEEEEeC
Confidence 456899999999998 689887543 5999999876543211111 01112467899999888775
Q ss_pred CCCCEEEEE-----------eCCCeEEEEEecCCccceee------eeeecCCCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001184 419 PDGNFIGVA-----------FTKHLIHLYTYQGSNDLCQS------LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR 481 (1130)
Q Consensus 419 pdg~~las~-----------~~d~~i~vwd~~~~~~~~~~------~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~ 481 (1130)
++.+++| +.|+.+++|++.++...... .....+...+.+++|||||+.+.+++++.|++|+
T Consensus 83 --~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~ 160 (365)
T 4h5i_A 83 --KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMR 160 (365)
T ss_dssp --TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEE
T ss_pred --CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEE
Confidence 4566655 45788999999876432211 1123345668999999999965556777899999
Q ss_pred EEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCccee--eecCCCccEEEEEEecCCCeEEE
Q 001184 482 VWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV--DYDAPGLWCTTMLYSADGSRLFS 558 (1130)
Q Consensus 482 iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~ 558 (1130)
||| .+++++..+. |...|.+++|+| ++.++++++. +.+++|+..++.... ....+...+.+++|+|+++++++
T Consensus 161 iwd~~~~~~~~~~~-~~~~V~~v~fsp--dg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~ 236 (365)
T 4h5i_A 161 IIDPSDLTEKFEIE-TRGEVKDLHFST--DGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIA 236 (365)
T ss_dssp EEETTTTEEEEEEE-CSSCCCEEEECT--TSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEE
T ss_pred EeECCCCcEEEEeC-CCCceEEEEEcc--CCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEE
Confidence 999 8888888875 788999999965 6688988885 556677766666554 33456778999999999999999
Q ss_pred eeecCCCCcEEEEeeCCCCce----eEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEE-eccCCCC
Q 001184 559 CGTSKEGDSHLVEWNESEGAL----KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTST-EAEGGLP 633 (1130)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~ 633 (1130)
++.++.....+++|+...... ...+.+|.. .|.+++|+|+|++|++|+.|+.|+|||+.+++++..+ ..| ..
T Consensus 237 ~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH--~~ 313 (365)
T 4h5i_A 237 ASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK-GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH--SF 313 (365)
T ss_dssp EEESSSCCEEEEEEEEETTEEEEEEEEEEESSCS-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS--SS
T ss_pred EecCCcceeEEeecccccceecceeeeeecCCCC-CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc--cC
Confidence 987544445788999876543 345566555 7999999999999999999999999999999988875 444 44
Q ss_pred CcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 634 SLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 634 ~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
.|++++|+|||++|++++.|++|+||++..+
T Consensus 314 ~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 314 AITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 8999999999999999999999999999765
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-32 Score=311.89 Aligned_cols=291 Identities=16% Similarity=0.257 Sum_probs=243.6
Q ss_pred ccCCCC--EEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCC
Q 001184 344 MHQGSS--VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1130)
Q Consensus 344 ~~h~~~--V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 421 (1130)
-+|... +.+++|++ .. +++++.||.|+|||+.+++.... ....|...|.+++|+|++
T Consensus 88 ~~~~~~~~~~~~~~s~--~~-l~~~~~d~~v~lw~~~~~~~~~~------------------~~~~~~~~v~~v~~s~~~ 146 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSN--LN-VVAVALERNVYVWNADSGSVSAL------------------AETDESTYVASVKWSHDG 146 (401)
T ss_dssp TTCCCCTTCBCEEECT--TS-EEEEEETTEEEEEETTTCCEEEE------------------EECCTTCCEEEEEECTTS
T ss_pred CCCcCCceEEEEeecC--CC-EEEEECCCeEEEeeCCCCcEeEe------------------eecCCCCCEEEEEECCCC
Confidence 345555 44555655 44 56777899999999999887642 223488999999999999
Q ss_pred CEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-c-CCCeeeEecCCCcC
Q 001184 422 NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-L-SGRKLFQFEGHEAP 499 (1130)
Q Consensus 422 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~-~~~~~~~~~~h~~~ 499 (1130)
++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+ +. ++++++.|+.|++|| . .+..+..+.+|.+.
T Consensus 147 ~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 219 (401)
T 4aez_A 147 SFLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSE 219 (401)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSC
T ss_pred CEEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCCCCC
Confidence 999999999999999999887554 577999999999994 45 799999999999999 4 57778899999999
Q ss_pred EEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCce
Q 001184 500 VYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL 579 (1130)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1130)
|.+++|++ ++.+|++++.|+.|++||+++......+..+...|.+++|+|++..+++.+. +..++.|++||+.+++.
T Consensus 220 v~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~~ 296 (401)
T 4aez_A 220 VCGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGAR 296 (401)
T ss_dssp EEEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCCE
T ss_pred eeEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCCE
Confidence 99999976 5689999999999999999998888888889999999999998866655431 12389999999999999
Q ss_pred eEEEecccCceeEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 001184 580 KRTYIGFRKKSAGVVQFDTTRNRILAAG--EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIK 657 (1130)
Q Consensus 580 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~ 657 (1130)
+..+.. ...+.+++|+|+++++++++ .||.|++||+.+++........++...|.+++|+|++++|++++.||.|+
T Consensus 297 ~~~~~~--~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~ 374 (401)
T 4aez_A 297 VNTVDA--GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLK 374 (401)
T ss_dssp EEEEEC--SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEE
T ss_pred EEEEeC--CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 988864 33799999999999999954 89999999999987777655555666899999999999999999999999
Q ss_pred EEEcCCCchh
Q 001184 658 ILANADGLRA 667 (1130)
Q Consensus 658 iw~~~~~~~~ 667 (1130)
+|++.++...
T Consensus 375 iw~~~~~~~~ 384 (401)
T 4aez_A 375 FWRVYDGDHV 384 (401)
T ss_dssp EEECCC----
T ss_pred EEECCCCccc
Confidence 9999887433
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=306.50 Aligned_cols=306 Identities=15% Similarity=0.257 Sum_probs=249.1
Q ss_pred EeeCCCCceeEEEecccCceeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcC-CCCEEE
Q 001184 571 EWNESEGALKRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK-EGNLLV 648 (1130)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~-~~~~l~ 648 (1130)
+|+....+....+.+|.. .|.+++|+|++ ++|++|+.||.|++||+.+++....+...++...|.+++|+| ++.+|+
T Consensus 57 ~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 135 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFDR-RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLF 135 (383)
T ss_dssp HHHHTTCEEEEEECCCSS-CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEE
T ss_pred cccccccceEEeccCCCC-CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEE
Confidence 455566677778888766 89999999999 899999999999999999999888887656666899999999 789999
Q ss_pred EEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCC
Q 001184 649 VTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGI 728 (1130)
Q Consensus 649 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1130)
+++.|+.|++||+.... ...
T Consensus 136 s~~~d~~i~iwd~~~~~--~~~---------------------------------------------------------- 155 (383)
T 3ei3_B 136 VSSIRGATTLRDFSGSV--IQV---------------------------------------------------------- 155 (383)
T ss_dssp EEETTTEEEEEETTSCE--EEE----------------------------------------------------------
T ss_pred EEeCCCEEEEEECCCCc--eEE----------------------------------------------------------
Confidence 99999999999975320 000
Q ss_pred CCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccc
Q 001184 729 EKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKAT 808 (1130)
Q Consensus 729 ~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 808 (1130)
+.
T Consensus 156 -----------------------------------------------------------------~~------------- 157 (383)
T 3ei3_B 156 -----------------------------------------------------------------FA------------- 157 (383)
T ss_dssp -----------------------------------------------------------------EE-------------
T ss_pred -----------------------------------------------------------------Ee-------------
Confidence 00
Q ss_pred cccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCC
Q 001184 809 AAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDN 887 (1130)
Q Consensus 809 ~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~ 887 (1130)
....+...|.+++|+|++++|++++ |+.|++||+ +++.+..+..|...|.+++|+| ++
T Consensus 158 -------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~ 216 (383)
T 3ei3_B 158 -------------------KTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RC 216 (383)
T ss_dssp -------------------CCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SC
T ss_pred -------------------ccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CC
Confidence 0013567789999999999999998 899999999 5778889999999999999999 66
Q ss_pred c-EEEEEeCCCcEEEEEeec----CeEEEEEecCCCCeeEEEEcc-CCCeEEEEeCCCcEEEEECCCCcccceeeEeccC
Q 001184 888 N-IIAIGMEDSTIQIYNVRV----DEVKTKLKGHQKHITGLAFST-NLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPA 961 (1130)
Q Consensus 888 ~-~lasg~~dg~v~iwd~~~----~~~~~~l~~h~~~V~~l~~s~-dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~ 961 (1130)
. +|++++.|+.|++||+.+ +.++..+ +|...|++++|+| ++++|++++.|+.|++||+.+++...........
T Consensus 217 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 295 (383)
T 3ei3_B 217 DWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHR 295 (383)
T ss_dssp TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBC
T ss_pred CCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccc
Confidence 6 999999999999999998 6677766 6999999999999 9999999999999999999987765443322111
Q ss_pred C-CC----------CCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCC
Q 001184 962 G-KL----------PVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD 1030 (1130)
Q Consensus 962 ~-~~----------~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D 1030 (1130)
. .+ ...+..++|+|++++ .++.|+.|++||+.+++.+..+..+. +...+.+++|+|||++|++|+ |
T Consensus 296 ~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~-~~~~~~~~~~s~~g~~l~s~s-d 372 (383)
T 3ei3_B 296 QFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPN-AAGIISLNKFSPTGDVLASGM-G 372 (383)
T ss_dssp CCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTT-BCSCCCEEEECTTSSEEEEEE-T
T ss_pred ccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCC-CCceEEEEEEecCccEEEEec-C
Confidence 0 01 123445666777766 44579999999999999998887642 367788889999999999997 9
Q ss_pred CcEEEEeCCC
Q 001184 1031 GSIGVFDADS 1040 (1130)
Q Consensus 1031 g~i~vwd~~~ 1040 (1130)
|.|++||+++
T Consensus 373 ~~i~iw~~~~ 382 (383)
T 3ei3_B 373 FNILIWNRED 382 (383)
T ss_dssp TEEEEEECC-
T ss_pred CcEEEEecCC
Confidence 9999999874
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=320.74 Aligned_cols=311 Identities=13% Similarity=0.179 Sum_probs=248.0
Q ss_pred ccccCCCCCc----ccccCCcccceeeec--cCCCCEEEEEEec-CCCeEEEEEeCcCeEEEEeCCC---Cceeecccce
Q 001184 320 ATYPVPSQQA----TWSLDDLPRAVACTM--HQGSSVVSMDFHP-FHHTLLVVGCGDGEITLWDVGL---RERLVSKPFK 389 (1130)
Q Consensus 320 ~~~s~~~~~~----~~~~~~~~~~~~~~~--~h~~~V~~v~fsp-dg~~llasg~~dg~i~iwd~~~---~~~~~~~~~~ 389 (1130)
..|+|++... .|. ..++.+..+ +|.+.|++++|+| +++ +||+|+.||+|+|||+.+ +.....
T Consensus 33 ~~f~~~~~~~~~~~~w~---~~g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~---- 104 (437)
T 3gre_A 33 KEFGPIQEIVRSPNMGN---LRGKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYSS---- 104 (437)
T ss_dssp GGGCCCCCCCCCCCGGG---CCCCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCSC----
T ss_pred hhcCCcccccccccccc---ccceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccce----
Confidence 3456666533 243 334555555 4889999999999 998 699999999999999976 331110
Q ss_pred eeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEec---CCccceee-------eeeec--CCCCe
Q 001184 390 IWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQ---GSNDLCQS-------LEIDA--HVGGV 457 (1130)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~---~~~~~~~~-------~~~~~--h~~~V 457 (1130)
....+|...|.+++|+|++++|++|+.||+|++||+. +++..... ..+.. +...+
T Consensus 105 -------------~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 171 (437)
T 3gre_A 105 -------------SLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYA 171 (437)
T ss_dssp -------------SEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCE
T ss_pred -------------eeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCc
Confidence 0122589999999999999999999999999999995 54433211 01112 55667
Q ss_pred eEEE--EecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecC--CCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCc
Q 001184 458 NDLA--FSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEG--HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG 532 (1130)
Q Consensus 458 ~~i~--~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~ 532 (1130)
.++. +++++. ++++++.|+.|++|| .+++.+..+.+ |...|.+++|++ ++.+|++++.||.|++||++...
T Consensus 172 ~~~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~i~iwd~~~~~ 247 (437)
T 3gre_A 172 VRMRAFVNEEKS--LLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDE--ECCVLILGTTRGIIDIWDIRFNV 247 (437)
T ss_dssp EEEEEEECSSCE--EEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECT--TSCEEEEEETTSCEEEEETTTTE
T ss_pred eEEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECC--CCCEEEEEcCCCeEEEEEcCCcc
Confidence 7777 456777 899999999999999 88999999998 899999999965 46899999999999999999988
Q ss_pred ceeeec-CCCccEEEEEEe----cCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecc---------------------
Q 001184 533 SRVDYD-APGLWCTTMLYS----ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGF--------------------- 586 (1130)
Q Consensus 533 ~~~~~~-~~~~~v~~~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~--------------------- 586 (1130)
....+. .+...|.+++|+ +++.+|++++. ++.|++||+.+++.+..+.++
T Consensus 248 ~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 323 (437)
T 3gre_A 248 LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSS----KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNF 323 (437)
T ss_dssp EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEEST----TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCC
T ss_pred EEEEEecCCCCceEEEEeccccCCCccEEEEEcC----CCcEEEEEcCCCcEEEEEEcCCCCCccceeccccccccccee
Confidence 777765 666789999665 46778998875 899999999999998888865
Q ss_pred ----cCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccC--------------------------------
Q 001184 587 ----RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEG-------------------------------- 630 (1130)
Q Consensus 587 ----~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-------------------------------- 630 (1130)
+...+.+++|+ ++++|++|+.||.|++||+.+++....+..+.
T Consensus 324 ~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (437)
T 3gre_A 324 CGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDD 402 (437)
T ss_dssp CCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC---------
T ss_pred cccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCc
Confidence 33357888999 77899999999999999999998877776531
Q ss_pred ---CCCCcceEEEcCC--CCEEEEEeCCCcEEEEE
Q 001184 631 ---GLPSLPRLRFNKE--GNLLVVTTADQGIKILA 660 (1130)
Q Consensus 631 ---~~~~i~~v~~s~~--~~~l~~~~~dg~i~iw~ 660 (1130)
+...|++++|+++ +.+|++|+.||.|+||+
T Consensus 403 ~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 403 SLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ----CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 4568999999987 78999999999999995
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-33 Score=321.09 Aligned_cols=304 Identities=16% Similarity=0.234 Sum_probs=231.2
Q ss_pred eeEEEecccCceeEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcC-CCCEEEEEeCCCcE
Q 001184 579 LKRTYIGFRKKSAGVVQFDTT-RNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK-EGNLLVVTTADQGI 656 (1130)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~-~~~~l~~~~~dg~i 656 (1130)
......+|.. .|++++|+|. +++|++|+.||.|+|||+.+++....+...+|...|.+++|+| ++.+|++++.||+|
T Consensus 111 ~~~~~~~~~~-~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v 189 (435)
T 4e54_B 111 ILQKAAPFDR-RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT 189 (435)
T ss_dssp SCCEEEECSS-CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred ecccCCCCCC-CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence 3344455444 7999999994 5689999999999999999888777776666777999999998 78999999999999
Q ss_pred EEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccc
Q 001184 657 KILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLED 736 (1130)
Q Consensus 657 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1130)
++||+..+.. ..+
T Consensus 190 ~iwd~~~~~~--~~~----------------------------------------------------------------- 202 (435)
T 4e54_B 190 RLQDFKGNIL--RVF----------------------------------------------------------------- 202 (435)
T ss_dssp EEEETTSCEE--EEE-----------------------------------------------------------------
T ss_pred EEeeccCCce--eEE-----------------------------------------------------------------
Confidence 9999754310 000
Q ss_pred cCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccc
Q 001184 737 ISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHW 816 (1130)
Q Consensus 737 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w 816 (1130)
.
T Consensus 203 -----------------------------------------------~-------------------------------- 203 (435)
T 4e54_B 203 -----------------------------------------------A-------------------------------- 203 (435)
T ss_dssp -----------------------------------------------E--------------------------------
T ss_pred -----------------------------------------------e--------------------------------
Confidence 0
Q ss_pred cCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeC
Q 001184 817 QPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGME 895 (1130)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~ 895 (1130)
....+...+.+++|+|++++|++|+ ||.|++||+.+ +.+..+.+|...|.+++|+|++..++++|+.
T Consensus 204 -----------~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~ 271 (435)
T 4e54_B 204 -----------SSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASV 271 (435)
T ss_dssp -----------CCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEET
T ss_pred -----------ccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecC
Confidence 0001344567789999999999998 89999999864 5667788999999999999965678999999
Q ss_pred CCcEEEEEeecCeEEE---EEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEE
Q 001184 896 DSTIQIYNVRVDEVKT---KLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQ 972 (1130)
Q Consensus 896 dg~v~iwd~~~~~~~~---~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 972 (1130)
|+.|+|||+.+.+... ...+|...|++++|+|||++|++++.||+|++||+.+++......................
T Consensus 272 d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (435)
T 4e54_B 272 DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAA 351 (435)
T ss_dssp TSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCE
T ss_pred cceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEE
Confidence 9999999998765433 3467999999999999999999999999999999998765443322211111112333455
Q ss_pred EcCCCcEEEEE-------------cCCcEEEEECCCceeeeeeecCCCCCCCeEEE-EECCCCCEEEEEeCCCcEEEEeC
Q 001184 973 FHSDQVRLLVN-------------HETQLAIYDGSKMECIRQWVPQDVLSSPISSA-AYSCNSQLIYATFTDGSIGVFDA 1038 (1130)
Q Consensus 973 ~s~d~~~l~~~-------------~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v-~~s~dg~~l~t~~~Dg~i~vwd~ 1038 (1130)
|+|++.+++++ .++.|++||..+++.+..+..+ |...|.++ +|+|||++|++|+ |+.|+|||+
T Consensus 352 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~--~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~ 428 (435)
T 4e54_B 352 WHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP--ESSGISSLNEFNPMGDTLASAM-GYHILIWSQ 428 (435)
T ss_dssp ECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS--SCCCCCCEEEECTTSSCEEEEC-SSEEEECCC
T ss_pred EcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC--CCCcEEEEEEECCCCCEEEEEc-CCcEEEEEC
Confidence 66666655543 2457999999999998887544 36788887 6999999999876 889999999
Q ss_pred CCcccc
Q 001184 1039 DSLRLR 1044 (1130)
Q Consensus 1039 ~~~~~~ 1044 (1130)
++++..
T Consensus 429 ~~gk~r 434 (435)
T 4e54_B 429 QEARTR 434 (435)
T ss_dssp C-----
T ss_pred CcCeee
Confidence 988753
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-32 Score=312.22 Aligned_cols=294 Identities=12% Similarity=0.122 Sum_probs=251.8
Q ss_pred eeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCc------ceeeecCCCccEEEEEEecC----C---CeE
Q 001184 490 LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG------SRVDYDAPGLWCTTMLYSAD----G---SRL 556 (1130)
Q Consensus 490 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~------~~~~~~~~~~~v~~~~~s~~----~---~~l 556 (1130)
...+.+|.+.|++++|++ .+|++++.||.|++||++... ....+..|...|.+++|+|+ + ++|
T Consensus 9 ~~~~~~h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEESSCSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 456779999999999976 699999999999999999887 67788889999999999999 9 999
Q ss_pred EEeeecCCCCcEEEEeeCCCCce-----eEEEeccc----CceeEEEEEc----CCCCE-EEEEeCCCcEEEEeCCC---
Q 001184 557 FSCGTSKEGDSHLVEWNESEGAL-----KRTYIGFR----KKSAGVVQFD----TTRNR-ILAAGEDNQIKFWDMDN--- 619 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~-----~~~~~~~~----~~~v~~~~~~----~~~~~-l~~~~~dg~i~vwd~~~--- 619 (1130)
++++. ++.|++||+.+++. ...+..|. ...+.+++|+ |++++ |++++.||.|++||+.+
T Consensus 85 ~s~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 85 ATTSF----SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp EEEET----TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred EEEcC----CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence 99986 89999999998887 88888874 3489999999 99999 99999999999999998
Q ss_pred ---CceeE-----EEec-----cCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhccccccccccccccc
Q 001184 620 ---VNMLT-----STEA-----EGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMK 686 (1130)
Q Consensus 620 ---~~~~~-----~~~~-----~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1130)
++.+. .+.. ..+...+.+++|+|++ ++++++.|+.|++||+.++. ....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~---------------- 222 (397)
T 1sq9_A 161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR-PLYN---------------- 222 (397)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE-EEEE----------------
T ss_pred ccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCc-eeEE----------------
Confidence 66655 6644 3445589999999999 99999999999999986541 0000
Q ss_pred ccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCC
Q 001184 687 VPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDS 766 (1130)
Q Consensus 687 ~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 766 (1130)
T Consensus 223 -------------------------------------------------------------------------------- 222 (397)
T 1sq9_A 223 -------------------------------------------------------------------------------- 222 (397)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCC---CCceeEEEEec
Q 001184 767 ASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENA---EDVVPCVALSK 843 (1130)
Q Consensus 767 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~---~~~i~~l~~s~ 843 (1130)
+. ...+| ...|.+++|+|
T Consensus 223 ---------------------------~~--------------------------------~~~~h~~~~~~i~~i~~~~ 243 (397)
T 1sq9_A 223 ---------------------------FE--------------------------------SQHSMINNSNSIRSVKFSP 243 (397)
T ss_dssp ---------------------------EE--------------------------------CCC---CCCCCEEEEEECS
T ss_pred ---------------------------Ee--------------------------------ccccccccCCccceEEECC
Confidence 00 00025 77889999999
Q ss_pred CCCEEEEEe-C---CeEEEEECCCceeEEEEeC-------------CCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeec
Q 001184 844 NDSYVMSAG-G---GKVSLFNMMNFKVMTTFMS-------------PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV 906 (1130)
Q Consensus 844 dg~~la~~~-d---g~i~iwd~~~~~~~~~~~~-------------~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 906 (1130)
++++|++++ | |.|++||+.+++.+..+.. |...|.+++|+| ++.+|++++.||.|++||+.+
T Consensus 244 ~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~ 322 (397)
T 1sq9_A 244 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKT 322 (397)
T ss_dssp STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTT
T ss_pred CCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEEEEcCC
Confidence 999999988 7 8999999999999999998 999999999999 899999999999999999999
Q ss_pred CeEEEEEe------cC---------------CCCeeEEEEccCC----------CeEEEEeCCCcEEEEECCCC
Q 001184 907 DEVKTKLK------GH---------------QKHITGLAFSTNL----------NILVSSGSDAQLIFWNTDTW 949 (1130)
Q Consensus 907 ~~~~~~l~------~h---------------~~~V~~l~~s~dg----------~~L~s~s~Dg~i~vwd~~~~ 949 (1130)
++.+..+. +| ...|++++|+|++ ++|++++.||.|++|++.++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 323 KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred CceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 99999999 88 9999999999998 79999999999999999874
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=322.06 Aligned_cols=285 Identities=13% Similarity=0.085 Sum_probs=224.5
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCC--ceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLR--ERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 423 (1130)
|.+.|++++|+|+|+ +||+|+.||.|+|||+.++ +.+. .+.+|...|.+++|+|++++
T Consensus 10 ~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHAR-------------------TFSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp CSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECC-------------------CBCCCSSCEEEEEECTTTCC
T ss_pred CCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEE-------------------EEecCCceEEEEEEeCCCCE
Confidence 667999999999998 5999999999999999987 3332 46799999999999999999
Q ss_pred EEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCC---eeeEecC-CCc
Q 001184 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGR---KLFQFEG-HEA 498 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~---~~~~~~~-h~~ 498 (1130)
|++++.|++|++||+.+++.......+.+|...|.+++|+|+++ +|++++.|+.|++|| ..++ ....+.+ |..
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS 147 (377)
T ss_dssp EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence 99999999999999998773334446788999999999999999 799999999999999 5554 4677887 999
Q ss_pred CEEEEeecccCCccEEEEEecCCcEEEEEccC------------------CcceeeecCCCccEEEEEEecCCCeEEEee
Q 001184 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN------------------VGSRVDYDAPGLWCTTMLYSADGSRLFSCG 560 (1130)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1130)
.|.+++|++ ++.+|++++.|+.|++||++. ......+ .|...|.+++|+|++++|++++
T Consensus 148 ~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~ 224 (377)
T 3dwl_C 148 TILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAG 224 (377)
T ss_dssp CEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEE
T ss_pred CeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEe
Confidence 999999976 558999999999999999853 2233344 7788899999999999999998
Q ss_pred ecCCCCcEEEEeeCCCCce----eEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---------------
Q 001184 561 TSKEGDSHLVEWNESEGAL----KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN--------------- 621 (1130)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--------------- 621 (1130)
. ++.|++||+.+++. +..+.+|.. .+.+++|+|++++|++++.++.+ +|+.....
T Consensus 225 ~----d~~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 298 (377)
T 3dwl_C 225 H----DSSVTIAYPSAPEQPPRALITVKLSQL-PLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTS 298 (377)
T ss_dssp T----TTEEC-CEECSTTSCEEECCCEECSSS-CEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCC
T ss_pred C----CCcEEEEECCCCCCcceeeEeecCCCC-ceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccc
Confidence 6 89999999999987 778888765 79999999999999888766655 66654211
Q ss_pred ------------------------eeEEEec-----------cCCCCCcceEEEcCC-CC---EEEEEeCCCcEEEEEc
Q 001184 622 ------------------------MLTSTEA-----------EGGLPSLPRLRFNKE-GN---LLVVTTADQGIKILAN 661 (1130)
Q Consensus 622 ------------------------~~~~~~~-----------~~~~~~i~~v~~s~~-~~---~l~~~~~dg~i~iw~~ 661 (1130)
....... ..|...|.++.+.+. +. .|++++.||.|++||+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 299 FTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp BSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0000000 014557889886653 33 6999999999999985
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-31 Score=308.46 Aligned_cols=282 Identities=15% Similarity=0.269 Sum_probs=239.5
Q ss_pred CEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEe
Q 001184 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF 428 (1130)
Q Consensus 349 ~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~ 428 (1130)
-.+.++||+++ +||+|. |++|+|||+.+|+..... .+.+|...|++|+|+|||++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~-----------------~~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLL-----------------QMEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEE-----------------ECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEE-----------------EecCCCCcEEEEEECCCCCEEEEEE
Confidence 46789999865 688876 899999999999876421 2457888999999999999999999
Q ss_pred CCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCeeeEecCCCcCEEEEeec
Q 001184 429 TKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPVYSVCPH 506 (1130)
Q Consensus 429 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~~~~~~h~~~v~~~~~~ 506 (1130)
.||+|++||+.+++.+. .+.+|...|.+++++ +. ++++|+.|+.+++|| .....+..+.+|...+..+.+.
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999987655 678999999988875 55 899999999999999 4566778899999999999986
Q ss_pred ccCCccEEEEEecCCcEEEEEccCCcc----eeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEE
Q 001184 507 QKENIHFIFSTAVDGKIKAWLYDNVGS----RVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582 (1130)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1130)
+ ++.++++++.|+.+++|+...... ......+...|.+++|+|++..+++.+ .+..|+.|++||+.+++....
T Consensus 240 ~--~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~-~gs~D~~I~iwd~~t~~~~~~ 316 (420)
T 4gga_A 240 P--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATG-GGTSDRHIRIWNVCSGACLSA 316 (420)
T ss_dssp T--TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEE-ECTTTCEEEEEETTTTEEEEE
T ss_pred C--CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEE-eecCCCEEEEEeCCcccccee
Confidence 5 558999999999999999987653 345667788999999999776554332 123489999999999999988
Q ss_pred EecccCceeEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001184 583 YIGFRKKSAGVVQFDTTRNRILAAG--EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1130)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~ 660 (1130)
+..+. .+.++.|+++++.+++++ .|+.|+|||+.+++++..+..|.. .|.+++|+|+|++|++|+.|++|++||
T Consensus 317 ~~~~~--~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~--~V~~l~~spdg~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 317 VDAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAADETLRLWR 392 (420)
T ss_dssp EECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred ecccc--ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 88654 588889999999988865 789999999999999999887654 899999999999999999999999999
Q ss_pred cCCC
Q 001184 661 NADG 664 (1130)
Q Consensus 661 ~~~~ 664 (1130)
+...
T Consensus 393 v~~~ 396 (420)
T 4gga_A 393 CFEL 396 (420)
T ss_dssp CSCS
T ss_pred CCCC
Confidence 8654
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-32 Score=294.49 Aligned_cols=252 Identities=18% Similarity=0.269 Sum_probs=211.9
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecC--CCceEEEEEcCCCcEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIR 481 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d--~~~l~l~s~s~d~~v~ 481 (1130)
++.+|.+.|.+++|+|||++||+|+.|++|+|||+.++. ......+.+|.+.|++++|+++ ++ +|++|+.|++|+
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-~~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~ 80 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVM 80 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-BCCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-cEEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEE
Confidence 477999999999999999999999999999999997542 1223468899999999999864 77 899999999999
Q ss_pred EEe-cCC--CeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcc--eeeecCCCccEEEEEEecC----
Q 001184 482 VWD-LSG--RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS--RVDYDAPGLWCTTMLYSAD---- 552 (1130)
Q Consensus 482 iwd-~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~~---- 552 (1130)
+|| .++ ..+..+.+|...|.+++|+|..++.+|++++.|++|++||++.... ...+..|...|.+++|+|+
T Consensus 81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence 999 555 3567788999999999998875578999999999999999987532 3566788889999999997
Q ss_pred ---------CCeEEEeeecCCCCcEEEEeeCCCCc----eeEEEecccCceeEEEEEcCCC---CEEEEEeCCCcEEEEe
Q 001184 553 ---------GSRLFSCGTSKEGDSHLVEWNESEGA----LKRTYIGFRKKSAGVVQFDTTR---NRILAAGEDNQIKFWD 616 (1130)
Q Consensus 553 ---------~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~vwd 616 (1130)
+++|++++. |+.|++||+.+++ ....+.+|.. .|.+++|+|++ ++|++++.|++|++||
T Consensus 161 ~~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~~-~V~~v~~sp~~~~~~~las~s~D~~v~iWd 235 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYMASVSQDRTCIIWT 235 (297)
T ss_dssp ---------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred cccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCCC-ceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence 578999986 8999999998766 5667888766 89999999985 7999999999999999
Q ss_pred CCCCc---eeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001184 617 MDNVN---MLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANAD 663 (1130)
Q Consensus 617 ~~~~~---~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 663 (1130)
+.+.. ....+....+...|.+++|+|++++|++++.|+.|++|+...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred eCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 98753 122232234455799999999999999999999999999753
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=293.33 Aligned_cols=247 Identities=14% Similarity=0.228 Sum_probs=206.3
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCC--ceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC-
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLR--ERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD- 420 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd- 420 (1130)
.+|.+.|++++|+|+|+ +||+|+.|++|+|||+.++ +.+. .+.+|.+.|.+++|+|+
T Consensus 6 ~~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~-------------------~l~gH~~~V~~v~~s~~~ 65 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHPK 65 (297)
T ss_dssp CSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCE-------------------EECCCSSCEEEEEECCGG
T ss_pred cCCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEE-------------------EEccccCCeEEEEecCCC
Confidence 36999999999999998 5999999999999999754 2222 57899999999999874
Q ss_pred -CCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecC--CCceEEEEEcCCCcEEEEe-cCCC--eeeEec
Q 001184 421 -GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIRVWD-LSGR--KLFQFE 494 (1130)
Q Consensus 421 -g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d--~~~l~l~s~s~d~~v~iwd-~~~~--~~~~~~ 494 (1130)
|++||+|+.|++|++||+.+++. .....+.+|...|.+++|+|+ +. +|++++.|++|++|| .++. ....+.
T Consensus 66 ~g~~l~s~s~D~~v~iWd~~~~~~-~~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~~~ 142 (297)
T 2pm7_B 66 FGTILASCSYDGKVMIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPIIID 142 (297)
T ss_dssp GCSEEEEEETTTEEEEEEBSSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEEEE
T ss_pred cCCEEEEEcCCCEEEEEEcCCCce-EEEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeeeee
Confidence 89999999999999999988742 222357789999999999998 77 899999999999999 4442 246678
Q ss_pred CCCcCEEEEeecccC-----------CccEEEEEecCCcEEEEEccCCc----ceeeecCCCccEEEEEEecCC---CeE
Q 001184 495 GHEAPVYSVCPHQKE-----------NIHFIFSTAVDGKIKAWLYDNVG----SRVDYDAPGLWCTTMLYSADG---SRL 556 (1130)
Q Consensus 495 ~h~~~v~~~~~~~~~-----------~~~~l~s~s~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~s~~~---~~l 556 (1130)
+|...|.+++|+|.. ++.+|++|+.|++|++||++... ....+..|...|.+++|+|++ ++|
T Consensus 143 ~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~l 222 (297)
T 2pm7_B 143 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYM 222 (297)
T ss_dssp CCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred cccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEE
Confidence 999999999998752 35799999999999999998766 345678899999999999985 789
Q ss_pred EEeeecCCCCcEEEEeeCCCCc--eeE-EE--ecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001184 557 FSCGTSKEGDSHLVEWNESEGA--LKR-TY--IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMD 618 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~--~~~-~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 618 (1130)
++++. |+.|++||+.++. ... .+ ..+ ...+.+++|+|++++|++++.||.|++|+..
T Consensus 223 as~s~----D~~v~iWd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 223 ASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEET----TSCEEEEEESSTTSCCEEEESSSSCC-SSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEEEC----CCcEEEEEeCCCCCccceeeeecccC-CCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 99886 8999999987643 122 22 233 3478999999999999999999999999976
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=310.30 Aligned_cols=316 Identities=11% Similarity=0.083 Sum_probs=244.3
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
-...|.+++|||||+ ++|+++.|++|+ |...++ .+.+|...|.+++|+|||
T Consensus 14 ~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~----------------------~l~gh~~~v~~V~FsPdg---- 64 (588)
T 2j04_A 14 FEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAK----------------------DINCNSKNLFHVKEFPLE---- 64 (588)
T ss_dssp CSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCS----------------------CCSSBGGGTEEEEEECCC----
T ss_pred hhccEEEEEECCCCC-EEEEEcCCceee--cccccc----------------------eecCCCccEEEEEECCCC----
Confidence 457999999999998 699999999999 644443 245899999999999999
Q ss_pred EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCCCc-----CE
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEA-----PV 500 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~~-----~v 500 (1130)
.++.+.+|+.+....+ .+ .|...|.+++|||||+ .|++++.||.|++||..+ ++..+. |.. .|
T Consensus 65 ---~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv 132 (588)
T 2j04_A 65 ---FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTY 132 (588)
T ss_dssp ---CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCE
T ss_pred ---CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccE
Confidence 4665666654432211 22 5688999999999999 799999999999999544 777777 766 49
Q ss_pred EEEeecccCCccEEEEEecCCcEEEEEccCCcc-------eeee----cCCCccEEEEEEecCCCeEEEeeecCCCCcEE
Q 001184 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS-------RVDY----DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHL 569 (1130)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-------~~~~----~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1130)
.+++|+| +|++|++|+.||+|++||+..+.. ...+ .+|..+|.+++|+||| +++++. |+.|
T Consensus 133 ~svafSP--DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D~tV 204 (588)
T 2j04_A 133 HCFEWNP--IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----NNSV 204 (588)
T ss_dssp EEEEECS--SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----TCCE
T ss_pred EEEEEcC--CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----CCeE
Confidence 9999965 668999999999999999988653 3344 5567799999999999 666664 8999
Q ss_pred EEeeCCCCce---eEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEE--cCCC
Q 001184 570 VEWNESEGAL---KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRF--NKEG 644 (1130)
Q Consensus 570 ~~wd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~--s~~~ 644 (1130)
++||+.++.. .+++..++...|..++|+ ++.+++++ ++.|++||+.+++....... +...+..++| +|++
T Consensus 205 rlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~g--h~~~V~~va~~~s~d~ 279 (588)
T 2j04_A 205 FSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTG--SLENFHIIPLNHEKES 279 (588)
T ss_dssp EEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECS--CCSCCCEEEETTCSSC
T ss_pred EEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcC--CCceEEEEEeeeCCCC
Confidence 9999988774 356643344589999999 68899887 69999999998877444333 4558999999 9999
Q ss_pred CEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCcc
Q 001184 645 NLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSA 724 (1130)
Q Consensus 645 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1130)
..+++++.+|+ ++|..+.- +++|+
T Consensus 280 ~~La~a~edG~-klw~~d~~------------------------------~~spd------------------------- 303 (588)
T 2j04_A 280 TILLMSNKTSY-KVLLEDEL------------------------------HVTAD------------------------- 303 (588)
T ss_dssp EEEEECSSCEE-EEEESSSE------------------------------EEECC-------------------------
T ss_pred CEEEEEcCCCC-EEEeeccE------------------------------EECCC-------------------------
Confidence 99999999999 99987511 34444
Q ss_pred ccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeee
Q 001184 725 ARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWS 787 (1130)
Q Consensus 725 ~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~ 787 (1130)
+..+++ .|+++++|+....... . -.+...|.+++|+|||+.+++++.
T Consensus 304 ----~~l~a~--~d~~v~lW~~~g~~l~---------~-~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 304 ----NIIAPY--LEKKFKKWSTIWNEFN---------N-YETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp ----CSSHHH--HHHHHHHTTTTTTSSS---------S-SCCEEEEEEEEECTTSSEEEEEEE
T ss_pred ----ceEEEE--cCCEEEEEECCCCcee---------e-eccceEEEEEEECCCCCEEEEEEe
Confidence 333333 3799999987543211 0 113566899999999999998876
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-31 Score=300.73 Aligned_cols=317 Identities=16% Similarity=0.277 Sum_probs=244.0
Q ss_pred ecCCCcCEEEEeeccc--CCccEEEEEecCCcEEEEEccCCcceeeecC-----CCccEEEEEEecC----CCeEEEeee
Q 001184 493 FEGHEAPVYSVCPHQK--ENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA-----PGLWCTTMLYSAD----GSRLFSCGT 561 (1130)
Q Consensus 493 ~~~h~~~v~~~~~~~~--~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~s~~----~~~l~~~~~ 561 (1130)
..+|..+|.+++|+|. .....+++++.++.|++||+.+.+....+.. +...|.+++|+|+ +++|++++.
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 4489999999999874 2335677777788999999997766554432 5567999999999 668999886
Q ss_pred cCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeEEEec-cCCCCCcceEE
Q 001184 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT-TRNRILAAGEDNQIKFWDMDNVNMLTSTEA-EGGLPSLPRLR 639 (1130)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~i~~v~ 639 (1130)
++.|++||+.+++.+..+.+|.. .+.+++|+| +++++++++.||.|++||+.+++.+..+.. ..+...|.+++
T Consensus 94 ----dg~i~v~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 168 (366)
T 3k26_A 94 ----RGIIRIINPITMQCIKHYVGHGN-AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD 168 (366)
T ss_dssp ----TCEEEEECTTTCCEEEEEESCCS-CEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEE
T ss_pred ----CCEEEEEEchhceEeeeecCCCC-cEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEE
Confidence 89999999999999999998766 899999999 899999999999999999999998888732 23445899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCccccc
Q 001184 640 FNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILN 719 (1130)
Q Consensus 640 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~ 719 (1130)
|+|++++|++++.||.|++||+.++ +....+.... .++|+
T Consensus 169 ~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~-------------------~~~~~-------------------- 208 (366)
T 3k26_A 169 YDLLGEKIMSCGMDHSLKLWRINSK-RMMNAIKESY-------------------DYNPN-------------------- 208 (366)
T ss_dssp ECTTSSEEEEEETTSCEEEEESCSH-HHHHHHHHHH-------------------TCCGG--------------------
T ss_pred ECCCCCEEEEecCCCCEEEEECCCC-ccccccceeE-------------------EecCC--------------------
Confidence 9999999999999999999999876 3333332210 22232
Q ss_pred CCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCC
Q 001184 720 GADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRT 799 (1130)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~ 799 (1130)
+..+...........+.
T Consensus 209 ---------~~~~~~~~~~~~~~~~~------------------------------------------------------ 225 (366)
T 3k26_A 209 ---------KTNRPFISQKIHFPDFS------------------------------------------------------ 225 (366)
T ss_dssp ---------GCSSCCCCEEECCCSEE------------------------------------------------------
T ss_pred ---------CCcccccceeeccCccc------------------------------------------------------
Confidence 00000000000000000
Q ss_pred CCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCce-------------
Q 001184 800 EQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFK------------- 865 (1130)
Q Consensus 800 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~------------- 865 (1130)
....|...|.+++|+ ++++++++ ||.|++||+.+++
T Consensus 226 ----------------------------~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 275 (366)
T 3k26_A 226 ----------------------------TRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNV 275 (366)
T ss_dssp ----------------------------ECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCE
T ss_pred ----------------------------cccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcch
Confidence 001366677777777 55777776 7778888776653
Q ss_pred -eEEEEeCCCCCeEEEEEeCCC--CcEEEEEeCCCcEEEEEeecCe----EEEEEecC--CCCeeEEEEccCCCeEEEEe
Q 001184 866 -VMTTFMSPPPASTFLAFHPQD--NNIIAIGMEDSTIQIYNVRVDE----VKTKLKGH--QKHITGLAFSTNLNILVSSG 936 (1130)
Q Consensus 866 -~~~~~~~~~~~i~~l~~sp~~--~~~lasg~~dg~v~iwd~~~~~----~~~~l~~h--~~~V~~l~~s~dg~~L~s~s 936 (1130)
.+..+..|...|.+++|+| + +.+|++|+.||.|++||+.+++ ....+.+| ...|++++|+|++++|++++
T Consensus 276 ~~~~~~~~~~~~v~~~~~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 354 (366)
T 3k26_A 276 TILGRFDYSQCDIWYMRFSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVC 354 (366)
T ss_dssp EEEEEEECSSCCSSCCCCEE-CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred heeccccccCCcEEEEEEcC-CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEe
Confidence 3777888999999999999 7 9999999999999999999875 45578888 79999999999999999999
Q ss_pred CCCcEEEEECCC
Q 001184 937 SDAQLIFWNTDT 948 (1130)
Q Consensus 937 ~Dg~i~vwd~~~ 948 (1130)
.||.|++||+.+
T Consensus 355 ~dg~i~iwd~~~ 366 (366)
T 3k26_A 355 DDASIWRWDRLR 366 (366)
T ss_dssp TTSEEEEEEC--
T ss_pred CCCEEEEEEecC
Confidence 999999999853
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-31 Score=329.06 Aligned_cols=248 Identities=22% Similarity=0.294 Sum_probs=214.4
Q ss_pred eecCCCccEEEEEEcCCC-CEEEEEeCCCeEEEEEecCCccc--eeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcE
Q 001184 404 IVKDSSISVSRVAWSPDG-NFIGVAFTKHLIHLYTYQGSNDL--CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg-~~las~~~d~~i~vwd~~~~~~~--~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v 480 (1130)
.+.+|.+.|++++|+|++ ++|++|+.|++|++||+.+.... .....+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~--~l~sgs~Dg~v 454 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSGSWDGEL 454 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC--EEEEEeCCCcE
Confidence 578999999999999974 79999999999999999765422 22346789999999999999999 89999999999
Q ss_pred EEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeee---cCCCccEEEEEEecCC--C
Q 001184 481 RVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY---DAPGLWCTTMLYSADG--S 554 (1130)
Q Consensus 481 ~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~s~~~--~ 554 (1130)
+||| .++..+..+.+|...|.+++|++ ++..|++++.|++|++||.......... ..|...|.+++|+|++ .
T Consensus 455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 532 (694)
T 3dm0_A 455 RLWDLAAGVSTRRFVGHTKDVLSVAFSL--DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP 532 (694)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred EEEECCCCcceeEEeCCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence 9999 88889999999999999999975 5578999999999999998654333222 3567789999999987 5
Q ss_pred eEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCC
Q 001184 555 RLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPS 634 (1130)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 634 (1130)
.+++++. ++.|++||+.+++....+.+|.. .|.+++|+|++++|++|+.||.|++||+.+++.+..+..+ ..
T Consensus 533 ~l~s~s~----d~~v~vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~---~~ 604 (694)
T 3dm0_A 533 TIVSASW----DKTVKVWNLSNCKLRSTLAGHTG-YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN---SV 604 (694)
T ss_dssp EEEEEET----TSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS---SC
T ss_pred eEEEEeC----CCeEEEEECCCCcEEEEEcCCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC---Cc
Confidence 7888876 89999999999999999998766 8999999999999999999999999999999888776543 36
Q ss_pred cceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 635 LPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 635 i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+.+++|+|++.++++++ ++.|++||+.++
T Consensus 605 v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~ 633 (694)
T 3dm0_A 605 IHALCFSPNRYWLCAAT-EHGIKIWDLESK 633 (694)
T ss_dssp EEEEEECSSSSEEEEEE-TTEEEEEETTTT
T ss_pred EEEEEEcCCCcEEEEEc-CCCEEEEECCCC
Confidence 89999999998887765 556999999876
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-31 Score=312.31 Aligned_cols=300 Identities=12% Similarity=0.193 Sum_probs=233.2
Q ss_pred eccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCC------------c
Q 001184 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSS------------I 410 (1130)
Q Consensus 343 ~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~ 410 (1130)
.+.|.+.|++++|+|+|+ +||+|+.||.|+|||+.+++........ .......+.+|. .
T Consensus 24 ~~~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~~--------~~~~~~~~~~h~~~~~~~~~~~~~~ 94 (447)
T 3dw8_B 24 DVAEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSRG--------EYNVYSTFQSHEPEFDYLKSLEIEE 94 (447)
T ss_dssp CCCGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCCC--------CEEEEEEEECCCCEEEGGGTEEECC
T ss_pred cccccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCccccc--------ceeEecccccccccccccccccccC
Confidence 456789999999999998 5999999999999999987631100000 000112467888 8
Q ss_pred cEEEEEEcCCC--CEEEEEeCCCeEEEEEecCCccce------------------------------------eeee-ee
Q 001184 411 SVSRVAWSPDG--NFIGVAFTKHLIHLYTYQGSNDLC------------------------------------QSLE-ID 451 (1130)
Q Consensus 411 ~V~~v~~spdg--~~las~~~d~~i~vwd~~~~~~~~------------------------------------~~~~-~~ 451 (1130)
.|.+++|+|++ .+|++++.|++|++||+.++.... .... ..
T Consensus 95 ~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (447)
T 3dw8_B 95 KINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFAN 174 (447)
T ss_dssp CCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECS
T ss_pred ceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEecc
Confidence 89999999998 899999999999999998744210 0011 36
Q ss_pred cCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-c-CCCeee-------EecCCCcCEEEEeecccCCccEEEEEecCCc
Q 001184 452 AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-L-SGRKLF-------QFEGHEAPVYSVCPHQKENIHFIFSTAVDGK 522 (1130)
Q Consensus 452 ~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~-~~~~~~-------~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~ 522 (1130)
+|...|.+++|+|+++ +|++| .|+.|++|| . .+..+. .+.+|...|.+++|+|.. ..+|++++.||.
T Consensus 175 ~h~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~s~~~dg~ 250 (447)
T 3dw8_B 175 AHTYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNS-CNTFVYSSSKGT 250 (447)
T ss_dssp CCSSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSC-TTEEEEEETTSC
T ss_pred CCCcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCC-CcEEEEEeCCCe
Confidence 8999999999999999 78888 799999999 4 344444 366899999999997642 179999999999
Q ss_pred EEEEEccCCcc----eeeecCCCc------------cEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC-CceeEEEec
Q 001184 523 IKAWLYDNVGS----RVDYDAPGL------------WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE-GALKRTYIG 585 (1130)
Q Consensus 523 i~vwd~~~~~~----~~~~~~~~~------------~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~ 585 (1130)
|++||+++... ...+..+.. .|.+++|+|+|++|++++ ++.|++||+++ ++.+..+.+
T Consensus 251 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----~~~v~iwd~~~~~~~~~~~~~ 325 (447)
T 3dw8_B 251 IRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-----YLSVKVWDLNMENRPVETYQV 325 (447)
T ss_dssp EEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-----SSEEEEEETTCCSSCSCCEES
T ss_pred EEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-----CCeEEEEeCCCCccccceeec
Confidence 99999998876 566777765 899999999999999886 48999999997 888888888
Q ss_pred ccCce--------------eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEecc----------------------
Q 001184 586 FRKKS--------------AGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE---------------------- 629 (1130)
Q Consensus 586 ~~~~~--------------v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---------------------- 629 (1130)
|.... +..++|+|++++|++|+.||.|++||+.+++.+......
T Consensus 326 ~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (447)
T 3dw8_B 326 HEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKK 405 (447)
T ss_dssp CGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCT
T ss_pred cccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccc
Confidence 75310 223899999999999999999999999998876422111
Q ss_pred --------CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 630 --------GGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 630 --------~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
.....|..++|+|++++||+++.++ +.+|..
T Consensus 406 ~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 406 DEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp TCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred ccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 1223578899999999999998775 777764
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-30 Score=288.86 Aligned_cols=281 Identities=15% Similarity=0.272 Sum_probs=234.3
Q ss_pred EEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeC
Q 001184 350 VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFT 429 (1130)
Q Consensus 350 V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~ 429 (1130)
.++|+|||++ +||+|. |++|+|||+.+|+.+... .+.+|...|++++|+|+|++||+|+.
T Consensus 28 ~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~~-----------------~~~~~~~~V~~v~~~~~~~~l~sgs~ 87 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLL-----------------QMEQPGEYISSVAWIKEGNYLAVGTS 87 (318)
T ss_dssp CBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEE-----------------ECCSTTCCEEEEEECTTSSEEEEEET
T ss_pred ceEEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEE-----------------EecCCCCeEEEEEECCCCCEEEEEEC
Confidence 5679999986 578775 899999999999876521 24578899999999999999999999
Q ss_pred CCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCeeeEecCCCcCEEEEeecc
Q 001184 430 KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPVYSVCPHQ 507 (1130)
Q Consensus 430 d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~~~~~~h~~~v~~~~~~~ 507 (1130)
||+|++||+++++.+. .+.+|...+.++.+. +. .+++++.++.+++|+ .....+..+.+|...+..+.+.+
T Consensus 88 Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~~--~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (318)
T 4ggc_A 88 SAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 160 (318)
T ss_dssp TSEEEEEETTTTEEEE---EEECCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred CCcEEEeecCCceeEE---EecCccceEEEeecC--CC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence 9999999999987655 678999888776554 55 799999999999999 44566788899999999999865
Q ss_pred cCCccEEEEEecCCcEEEEEccCCcce----eeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEE
Q 001184 508 KENIHFIFSTAVDGKIKAWLYDNVGSR----VDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1130)
Q Consensus 508 ~~~~~~l~s~s~dg~i~vwd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1130)
++.++++++.|+.|++||+++++.. .....+...|.++.++|++..++.... +..++.|++||..........
T Consensus 161 --~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~i~lwd~~~~~~~~~~ 237 (318)
T 4ggc_A 161 --DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSAV 237 (318)
T ss_dssp --TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CTTTCEEEEEETTTCCEEEEE
T ss_pred --CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cCCCCEEEEEecccccccccc
Confidence 5579999999999999999876543 345566778999999998876654332 234889999999988877666
Q ss_pred ecccCceeEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 584 IGFRKKSAGVVQFDTTRNRILAAG--EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
... ..+..+.|+++++.+++++ .|+.|++||+.+++++..+..|.. .|++++|+|++++|++++.||+|+|||+
T Consensus 238 ~~~--~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~--~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 238 DAH--SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp ECS--SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred cce--eeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 533 3688899999999888765 799999999999999999887654 8999999999999999999999999998
Q ss_pred CCC
Q 001184 662 ADG 664 (1130)
Q Consensus 662 ~~~ 664 (1130)
.+.
T Consensus 314 ~~~ 316 (318)
T 4ggc_A 314 FEL 316 (318)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-31 Score=297.89 Aligned_cols=203 Identities=10% Similarity=0.099 Sum_probs=168.1
Q ss_pred CCCceeEEEEecCCCEEEEEe---CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCe
Q 001184 832 AEDVVPCVALSKNDSYVMSAG---GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE 908 (1130)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~ 908 (1130)
+...+.+++|||||+++++++ |++|+|||+.+++++..+. |...|.+++|+| ++++|++++.+ .+++|+..+++
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~ 208 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGS 208 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCC
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCc
Confidence 556789999999999987654 6899999999999999886 677899999999 89999999855 57777777776
Q ss_pred EEEE--EecCCCCeeEEEEccCCCeEEEEeCCC----cEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE
Q 001184 909 VKTK--LKGHQKHITGLAFSTNLNILVSSGSDA----QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1130)
Q Consensus 909 ~~~~--l~~h~~~V~~l~~s~dg~~L~s~s~Dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 982 (1130)
.+.. ..+|...|.+++|+||++++++++.|+ .+++|++.............. .+...|.+++|+|||++|++
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~V~~~~~Spdg~~las 286 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVT--NRFKGITSMDVDMKGELAVL 286 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEE--SSCSCEEEEEECTTSCEEEE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeec--CCCCCeEeEEECCCCCceEE
Confidence 5543 457889999999999999999999887 588899877543222222222 23368999999999999998
Q ss_pred -EcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCc
Q 001184 983 -NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSL 1041 (1130)
Q Consensus 983 -~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~ 1041 (1130)
+.|+.|+|||+.+++++..+.. +|..+|++++|||||++||+|+.|++|+|||+...
T Consensus 287 gs~D~~V~iwd~~~~~~~~~~~~--gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 287 ASNDNSIALVKLKDLSMSKIFKQ--AHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EETTSCEEEEETTTTEEEEEETT--SSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EcCCCEEEEEECCCCcEEEEecC--cccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 5799999999999999887632 23889999999999999999999999999999754
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-31 Score=302.34 Aligned_cols=300 Identities=16% Similarity=0.178 Sum_probs=239.5
Q ss_pred cCCCCEEEEEEec-CCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC-CCC
Q 001184 345 HQGSSVVSMDFHP-FHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGN 422 (1130)
Q Consensus 345 ~h~~~V~~v~fsp-dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~ 422 (1130)
+|.+.|++++|+| +++ +|++|+.||.|+|||+.+++.......... .........+|...|.+++|+| +++
T Consensus 41 ~h~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~ 113 (408)
T 4a11_B 41 IHGGGINTLDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKAV------CSIGRDHPDVHRYSVETVQWYPHDTG 113 (408)
T ss_dssp CCSSCEEEEEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECEE------EEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred ccCCcEEEEEEecCCCC-EEEEEcCCCeEEEEECCCCcccceEecccc------ccccccccccCCCcEEEEEEccCCCc
Confidence 4999999999999 998 699999999999999998876542110000 0000011246999999999999 788
Q ss_pred EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecC---CCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCc
Q 001184 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP---NKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA 498 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d---~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~ 498 (1130)
+|++++.||.|++||+.+++... .+ .+...+.+++|++. +. ++++++.|+.|++|| .+++.+..+.+|..
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~ 187 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQTAD---VF-NFEETVYSHHMSPVSTKHC--LVAVGTRGPKVQLCDLKSGSCSHILQGHRQ 187 (408)
T ss_dssp CEEEEETTSEEEEEETTTTEEEE---EE-ECSSCEEEEEECSSCSSCC--EEEEEESSSSEEEEESSSSCCCEEECCCCS
T ss_pred EEEEEeCCCeEEEeeCCCCccce---ec-cCCCceeeeEeecCCCCCc--EEEEEcCCCeEEEEeCCCcceeeeecCCCC
Confidence 99999999999999999987554 23 37788999999984 44 799999999999999 88889999999999
Q ss_pred CEEEEeecccCCccEEEEEecCCcEEEEEccCCcce-eee---------------cCCCccEEEEEEecCCCeEEEeeec
Q 001184 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR-VDY---------------DAPGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-~~~---------------~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
.|.+++|++... .++++++.||.|++||++..... ..+ ..+...|.+++|+|++++|++++.
T Consensus 188 ~v~~~~~~~~~~-~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 265 (408)
T 4a11_B 188 EILAVSWSPRYD-YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT- 265 (408)
T ss_dssp CEEEEEECSSCT-TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET-
T ss_pred cEEEEEECCCCC-cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC-
Confidence 999999976442 36999999999999999876522 222 456778999999999999999986
Q ss_pred CCCCcEEEEeeCCCCceeEEEecccC----ceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceE
Q 001184 563 KEGDSHLVEWNESEGALKRTYIGFRK----KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v 638 (1130)
++.|++||+.+++....+..+.. ...........+..+++++.++.|++||+.+++.+..+..+.. .|.++
T Consensus 266 ---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~--~v~~~ 340 (408)
T 4a11_B 266 ---DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYK--TVDCC 340 (408)
T ss_dssp ---TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSS--CEEEE
T ss_pred ---CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCC--eEEEE
Confidence 89999999998876654433211 1122233334456777888899999999999999998876654 89999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 639 RFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 639 ~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+|+|++++|++++.||.|++|++.+.
T Consensus 341 ~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 341 VFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp EEETTTTEEEEEETTSCEEEEEECC-
T ss_pred EEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 99999999999999999999999887
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-31 Score=297.13 Aligned_cols=252 Identities=14% Similarity=0.204 Sum_probs=207.4
Q ss_pred eeecCCCccEEEEEEcCCCCEE-EEEeC---CCeEEEEEecCCccceeeeeeecCCCCeeEEEEecC---CCceEEEEEc
Q 001184 403 AIVKDSSISVSRVAWSPDGNFI-GVAFT---KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP---NKQLCIVTCG 475 (1130)
Q Consensus 403 ~~~~~h~~~V~~v~~spdg~~l-as~~~---d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d---~~~l~l~s~s 475 (1130)
.++.+|...|.+++|+|++..+ ++|+. |+.|++||+.+++.... ...+|...|.+++|+|+ ++ ++++++
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~l~~~~ 87 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQR--YLATGD 87 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTC--CEEEEE
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCc--eEEEec
Confidence 4677899999999999999655 55655 89999999998874432 23479999999999999 57 799999
Q ss_pred CCCcEEEEe-cCCC-eeeEecCCCcCEEEEeecc----cCCccEEEEEecCCcEEEEEccCCc-ceeeecCCCc----cE
Q 001184 476 DDKLIRVWD-LSGR-KLFQFEGHEAPVYSVCPHQ----KENIHFIFSTAVDGKIKAWLYDNVG-SRVDYDAPGL----WC 544 (1130)
Q Consensus 476 ~d~~v~iwd-~~~~-~~~~~~~h~~~v~~~~~~~----~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~----~v 544 (1130)
.|+.|++|| .+++ .+..+.+|...|.+++|.+ ++++.+|++++.||.|++||++... ....+..+.. .+
T Consensus 88 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 167 (357)
T 3i2n_A 88 FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC 167 (357)
T ss_dssp TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred CCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence 999999999 6666 8899999999999997743 5677899999999999999999876 4555554433 78
Q ss_pred EEEE----EecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcC---CCCEEEEEeCCCcEEEEeC
Q 001184 545 TTML----YSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT---TRNRILAAGEDNQIKFWDM 617 (1130)
Q Consensus 545 ~~~~----~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~vwd~ 617 (1130)
.+++ |+|+++++++++. ++.|++||+++++.... ..+ ...+.+++|+| +++++++++.||.|++||+
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~-~~~-~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 241 (357)
T 3i2n_A 168 WTVAFGNAYNQEERVVCAGYD----NGDIKLFDLRNMALRWE-TNI-KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDM 241 (357)
T ss_dssp EEEEEECCCC-CCCEEEEEET----TSEEEEEETTTTEEEEE-EEC-SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEE
T ss_pred EEEEEEeccCCCCCEEEEEcc----CCeEEEEECccCceeee-cCC-CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeC
Confidence 8888 7889999999985 89999999999887554 333 34799999999 8999999999999999999
Q ss_pred CCCceeEEEe---ccCCCCCcceEEEcCCCC-EEEEEeCCCcEEEEEcCCC
Q 001184 618 DNVNMLTSTE---AEGGLPSLPRLRFNKEGN-LLVVTTADQGIKILANADG 664 (1130)
Q Consensus 618 ~~~~~~~~~~---~~~~~~~i~~v~~s~~~~-~l~~~~~dg~i~iw~~~~~ 664 (1130)
.+++....+. ...+...|.+++|+|+++ ++++++.||.|++|++..+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 242 RTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP 292 (357)
T ss_dssp EEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECC
T ss_pred cCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCC
Confidence 8876554443 123445899999999998 8999999999999998765
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-30 Score=296.17 Aligned_cols=247 Identities=17% Similarity=0.137 Sum_probs=214.2
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
++..|.+.|.+++|+||+++||+++.|+.|++||+.+++ ......+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vw 79 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVW 79 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEE
Confidence 355789999999999999999999999999999999875 223346789999999999999999 89999999999999
Q ss_pred e-cCCCeee--EecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcc----eeeecCCCccEEEEEEecCCCeE
Q 001184 484 D-LSGRKLF--QFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS----RVDYDAPGLWCTTMLYSADGSRL 556 (1130)
Q Consensus 484 d-~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l 556 (1130)
| .+++... .+.+|...|.+++|++ ++.+|++++.|+.|++||++.... ......+...|.+++|+|+++++
T Consensus 80 d~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 157 (372)
T 1k8k_C 80 TLKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL 157 (372)
T ss_dssp EEETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEE
T ss_pred ECCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEE
Confidence 9 6665443 3467999999999975 558999999999999999998764 22335567899999999999999
Q ss_pred EEeeecCCCCcEEEEeeC------------------CCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001184 557 FSCGTSKEGDSHLVEWNE------------------SEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMD 618 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 618 (1130)
++++. ++.|++||+ ..++.+..+.+|.. .+.+++|+|++++|++++.||.|++||+.
T Consensus 158 ~~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~i~d~~ 232 (372)
T 1k8k_C 158 AAGSC----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGSRVAWVSHDSTVCLADAD 232 (372)
T ss_dssp EEEET----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSSEEEEEETTTEEEEEEGG
T ss_pred EEEcC----CCCEEEEEcccccccccccccccccccchhhheEecCCCCC-eEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 99986 899999995 46778888877655 89999999999999999999999999999
Q ss_pred CCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001184 619 NVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANAD 663 (1130)
Q Consensus 619 ~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 663 (1130)
+++.+..+..+.. .+.+++|+|++.+++++ .|+.|++|++.+
T Consensus 233 ~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 233 KKMAVATLASETL--PLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp GTTEEEEEECSSC--CEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CCceeEEEccCCC--CeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 9999988886654 79999999999988877 999999999977
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-33 Score=311.29 Aligned_cols=316 Identities=9% Similarity=0.038 Sum_probs=242.0
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecC
Q 001184 407 DSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS 486 (1130)
Q Consensus 407 ~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~ 486 (1130)
.-...|.+++|||||+++|+++.|++|+ |.+.++ .+.+|...|.+++|+|+| .++.+.+|+.+
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~------~l~gh~~~v~~V~FsPdg---------~~~~~~~~~~~ 75 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK------DINCNSKNLFHVKEFPLE---------FENKLDFELAQ 75 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS------CCSSBGGGTEEEEEECCC---------CCCTTTTSCCC
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc------eecCCCccEEEEEECCCC---------CcceEEEEeCC
Confidence 4467899999999999999999999999 755554 346899999999999998 37777777755
Q ss_pred CCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCc-----cEEEEEEecCCCeEEEeee
Q 001184 487 GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL-----WCTTMLYSADGSRLFSCGT 561 (1130)
Q Consensus 487 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~ 561 (1130)
+..+..+ .|...|.+++|+| +|..|++++.||.|++||.+. ....+. +.. .+.+++|+|||++|++++.
T Consensus 76 ~~~~~~~-~~~~~V~~vawSP--dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~ 149 (588)
T 2j04_A 76 QNGLLNS-QPVCYPRVCKPSP--IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNE 149 (588)
T ss_dssp SSCSSTT-SCSCCEEEEEECS--SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEET
T ss_pred CceEeec-CCCCcEEEEEECC--CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcC
Confidence 5554444 4588999999965 668999999999999999544 333444 444 4999999999999999986
Q ss_pred cCCCCcEEEEeeCCCCce-------eEEE----ecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce---eEEEe
Q 001184 562 SKEGDSHLVEWNESEGAL-------KRTY----IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNM---LTSTE 627 (1130)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~-------~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~ 627 (1130)
||+|++||+.++.. +.++ .+|. ..|.+++|+|+| +++++.|+.|++||+.++.. ..++.
T Consensus 150 ----DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~-~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~ 222 (588)
T 2j04_A 150 ----DGELQFFSIRKNSENTPEFYFESSIRLSDAGSK-DWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ 222 (588)
T ss_dssp ----TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCC-CCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE
T ss_pred ----CCEEEEEECCCCccccccceeeeeeeccccccc-ccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec
Confidence 99999999998863 5666 4433 589999999999 88999999999999988774 24453
Q ss_pred ccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccC
Q 001184 628 AEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVD 707 (1130)
Q Consensus 628 ~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~ 707 (1130)
. .+...|.+++|+ |+.||+++ ++.|++|++.++.....
T Consensus 223 ~-~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~-------------------------------------- 260 (588)
T 2j04_A 223 N-ASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSL-------------------------------------- 260 (588)
T ss_dssp C-CCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEE--------------------------------------
T ss_pred c-cccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEE--------------------------------------
Confidence 2 233479999999 68899887 69999999876521000
Q ss_pred CCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEE--eccCCeEEEe
Q 001184 708 RSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLY--TNSGIGILAL 785 (1130)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--s~~g~~l~~~ 785 (1130)
. .+|.+.+..++| +|++..++++
T Consensus 261 -----------------------------------------------------~--~gh~~~V~~va~~~s~d~~~La~a 285 (588)
T 2j04_A 261 -----------------------------------------------------K--TGSLENFHIIPLNHEKESTILLMS 285 (588)
T ss_dssp -----------------------------------------------------E--CSCCSCCCEEEETTCSSCEEEEEC
T ss_pred -----------------------------------------------------E--cCCCceEEEEEeeeCCCCCEEEEE
Confidence 0 127788889999 9999999999
Q ss_pred eeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCce
Q 001184 786 WSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFK 865 (1130)
Q Consensus 786 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~ 865 (1130)
+.+|+ ++|.++ .++++||+..+++. |+++++|+..++.
T Consensus 286 ~edG~-klw~~d----------------------------------------~~~~spd~~l~a~~-d~~v~lW~~~g~~ 323 (588)
T 2j04_A 286 NKTSY-KVLLED----------------------------------------ELHVTADNIIAPYL-EKKFKKWSTIWNE 323 (588)
T ss_dssp SSCEE-EEEESS----------------------------------------SEEEECCCSSHHHH-HHHHHHTTTTTTS
T ss_pred cCCCC-EEEeec----------------------------------------cEEECCCceEEEEc-CCEEEEEECCCCc
Confidence 99999 999642 24577777766664 7777777765443
Q ss_pred eEEEEeCCCCCeEEEEEeCCCCcEEEEEe
Q 001184 866 VMTTFMSPPPASTFLAFHPQDNNIIAIGM 894 (1130)
Q Consensus 866 ~~~~~~~~~~~i~~l~~sp~~~~~lasg~ 894 (1130)
+..+.+ ...|.+++|+| ||+++|+++
T Consensus 324 -l~~~~~-~~~I~~va~SP-dG~~lA~~~ 349 (588)
T 2j04_A 324 -FNNYET-TLVIHGISLSP-DGYSIAIVY 349 (588)
T ss_dssp -SSSSCC-EEEEEEEEECT-TSSEEEEEE
T ss_pred -eeeecc-ceEEEEEEECC-CCCEEEEEE
Confidence 223333 44577777777 777777664
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-30 Score=286.08 Aligned_cols=239 Identities=15% Similarity=0.229 Sum_probs=211.0
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
.+.+|.+.|.+++| |++++|++|+.||.|++||+.+++... .+..|...|.+++|+|+++ ++++++.|+.|++|
T Consensus 13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT---VVYTGQGFLNSVCYDSEKE--LLLFGGKDTMINGV 86 (313)
T ss_dssp EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE---EEEECSSCEEEEEEETTTT--EEEEEETTSCEEEE
T ss_pred HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE---EeecCCccEEEEEECCCCC--EEEEecCCCeEEEE
Confidence 68899999999999 999999999999999999998876443 5678999999999999999 89999999999999
Q ss_pred e-cC---CCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEec-CCCeEEE
Q 001184 484 D-LS---GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSA-DGSRLFS 558 (1130)
Q Consensus 484 d-~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~ 558 (1130)
+ .. ++.+..+.+|...|.+++| ++.++++++.||.|++|| .......+..+...+.++.|.| +++++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSF----QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred EeeecCCCCcccchhhcccCEEEEEe----cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 9 33 3567888999999999998 246899999999999999 5666777888899999999998 8999999
Q ss_pred eeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceE
Q 001184 559 CGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1130)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v 638 (1130)
++. ++.|++|| .++....+...+...+.+++|+|++. +++++.||.|++||+.+++.+..+..+.. .|.++
T Consensus 161 ~~~----d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~i~~~ 231 (313)
T 3odt_A 161 ASA----DKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHES--FVYCI 231 (313)
T ss_dssp EET----TSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEE
T ss_pred EEC----CCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCc--eEEEE
Confidence 986 89999999 56677778775566899999999987 99999999999999999999988876654 89999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 639 RFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 639 ~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+|+|++ .+++++.||.|++||+.++
T Consensus 232 ~~~~~~-~l~~~~~dg~v~iwd~~~~ 256 (313)
T 3odt_A 232 KLLPNG-DIVSCGEDRTVRIWSKENG 256 (313)
T ss_dssp EECTTS-CEEEEETTSEEEEECTTTC
T ss_pred EEecCC-CEEEEecCCEEEEEECCCC
Confidence 999999 5889999999999998765
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-30 Score=293.69 Aligned_cols=279 Identities=11% Similarity=0.120 Sum_probs=237.5
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCC-E
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN-F 423 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~ 423 (1130)
+|.+.|++++|+|+++ +|++|+.||.|+|||+.+++... ....+.+|...|.+++|+|+++ +
T Consensus 9 ~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~~ 71 (342)
T 1yfq_A 9 APKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNV----------------DLLQSLRYKHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp CCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEE----------------EEEEEEECSSCEEEEEEEESSSEE
T ss_pred CCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCccc----------------cceeeeecCCceEEEEECCCCCcE
Confidence 5999999999999998 58999999999999998876211 0013458999999999999999 9
Q ss_pred EEEEeCCCeEEEEEe-cCCccceeeeeeec--CCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cC---------CCee
Q 001184 424 IGVAFTKHLIHLYTY-QGSNDLCQSLEIDA--HVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LS---------GRKL 490 (1130)
Q Consensus 424 las~~~d~~i~vwd~-~~~~~~~~~~~~~~--h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~---------~~~~ 490 (1130)
|++|+.||.|++||+ .+++. ..+.+ |...|.+++|+| +. ++++++.|+.|++|| .+ ++++
T Consensus 72 l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (342)
T 1yfq_A 72 IYVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNS 144 (342)
T ss_dssp EEEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred EEEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCee
Confidence 999999999999999 87753 35778 999999999999 77 899999999999999 66 6777
Q ss_pred eEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccC-Ccc--eeeecCCCccEEEEEEec-CCCeEEEeeecCCCC
Q 001184 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN-VGS--RVDYDAPGLWCTTMLYSA-DGSRLFSCGTSKEGD 566 (1130)
Q Consensus 491 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-~~~--~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~ 566 (1130)
..+. |...|.+++|++ ++ +++++.|+.|++||++. ... ......+...+.+++|+| +++++++++. +
T Consensus 145 ~~~~-~~~~v~~~~~~~--~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~----d 215 (342)
T 1yfq_A 145 NNTK-VKNKIFTMDTNS--SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI----D 215 (342)
T ss_dssp SSSS-SCCCEEEEEECS--SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET----T
T ss_pred eEEe-eCCceEEEEecC--Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec----C
Confidence 7776 999999999964 32 99999999999999988 443 234455677899999999 9999999986 8
Q ss_pred cEEEEeeCCCC------ceeEEEecccC--------ceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEecc-CC
Q 001184 567 SHLVEWNESEG------ALKRTYIGFRK--------KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE-GG 631 (1130)
Q Consensus 567 ~~i~~wd~~~~------~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~ 631 (1130)
+.|++|+.... +....+..|.. ..+.+++|+|++++|++++.||.|++||+.+++.+..+..+ ..
T Consensus 216 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~ 295 (342)
T 1yfq_A 216 GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED 295 (342)
T ss_dssp SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSS
T ss_pred CcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCC
Confidence 99999999887 77888887643 37999999999999999999999999999999998887765 43
Q ss_pred CCCcceEEEcCCCCEEEEEeCCCc-EEEEE
Q 001184 632 LPSLPRLRFNKEGNLLVVTTADQG-IKILA 660 (1130)
Q Consensus 632 ~~~i~~v~~s~~~~~l~~~~~dg~-i~iw~ 660 (1130)
.|.+++ |++++|++++.||. .+.+.
T Consensus 296 --~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 296 --SVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp --EEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred --CceEec--CCCCeEEEEecCCccccccc
Confidence 788888 99999999999998 44443
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2.6e-31 Score=293.69 Aligned_cols=248 Identities=17% Similarity=0.242 Sum_probs=203.8
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC--CCC
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP--DGN 422 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~ 422 (1130)
+|.+.|++++|+|+|+ +||+|+.|++|+|||+.+++... ...+.+|.+.|.+++|+| +++
T Consensus 11 ~H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~-----------------~~~l~gH~~~V~~v~~~~~~~~~ 72 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQIL-----------------IADLRGHEGPVWQVAWAHPMYGN 72 (316)
T ss_dssp ---CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEE-----------------EEEEECCSSCEEEEEECCGGGSS
T ss_pred cccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEE-----------------EEEEcCCCccEEEEEeCCCCCCC
Confidence 5999999999999998 59999999999999998765321 114779999999999987 489
Q ss_pred EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecC--CCceEEEEEcCCCcEEEEe-cCCCe---eeEecCC
Q 001184 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIRVWD-LSGRK---LFQFEGH 496 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d--~~~l~l~s~s~d~~v~iwd-~~~~~---~~~~~~h 496 (1130)
+||+|+.|++|++||+.++... ....+.+|...|.+++|+|+ +. +|++|+.|++|++|| ..+.. ...+.+|
T Consensus 73 ~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h 149 (316)
T 3bg1_A 73 ILASCSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKINNAH 149 (316)
T ss_dssp CEEEEETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCBTTSS
T ss_pred EEEEEECCCEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeeeeccc
Confidence 9999999999999999886422 23367899999999999998 66 799999999999999 44322 3556789
Q ss_pred CcCEEEEeecccC---------------CccEEEEEecCCcEEEEEccCC---cceeeecCCCccEEEEEEecCC----C
Q 001184 497 EAPVYSVCPHQKE---------------NIHFIFSTAVDGKIKAWLYDNV---GSRVDYDAPGLWCTTMLYSADG----S 554 (1130)
Q Consensus 497 ~~~v~~~~~~~~~---------------~~~~l~s~s~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~s~~~----~ 554 (1130)
...|.+++|+|.. ++.+|++++.|++|++||++.. .....+..|...|.+++|+|++ +
T Consensus 150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~ 229 (316)
T 3bg1_A 150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS 229 (316)
T ss_dssp SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCC
T ss_pred cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCc
Confidence 9999999998752 1468999999999999999755 2445677888999999999987 7
Q ss_pred eEEEeeecCCCCcEEEEeeCCCC---c-eeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001184 555 RLFSCGTSKEGDSHLVEWNESEG---A-LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMD 618 (1130)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~---~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 618 (1130)
+|++++. |+.|++|++.+. . ....+..|. ..+.+++|+|++++|++++.|+.|++|+..
T Consensus 230 ~las~s~----D~~v~iw~~~~~~~~~~~~~~~~~~~-~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 230 TIASCSQ----DGRVFIWTCDDASSNTWSPKLLHKFN-DVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEEET----TCEEEEEECSSTTCCCCBCCEEEECS-SCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred eEEEEcC----CCeEEEEEccCccccchhhhhhhcCC-CcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 8999986 999999998763 1 223444544 489999999999999999999999999975
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-30 Score=301.31 Aligned_cols=273 Identities=23% Similarity=0.336 Sum_probs=236.2
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
+|...|+|++| +++ +|++|+.||.|+|||+.+++... .+.+|.+.|.+++| ++++|
T Consensus 131 ~~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~-------------------~~~~h~~~v~~l~~--~~~~l 186 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKR-------------------ILTGHTGSVLCLQY--DERVI 186 (435)
T ss_dssp SSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEE-------------------EECCCSSCEEEEEC--CSSEE
T ss_pred CCCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEE-------------------EEcCCCCcEEEEEE--CCCEE
Confidence 47788999887 677 59999999999999999988765 47799999999999 88999
Q ss_pred EEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCee---eEecCCCcCE
Q 001184 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKL---FQFEGHEAPV 500 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~---~~~~~h~~~v 500 (1130)
++|+.||+|++||+.+++.+. .+.+|...|.+++|++ . .+++|+.|+.|++|| .++..+ ..+.+|...|
T Consensus 187 ~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 259 (435)
T 1p22_A 187 ITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 259 (435)
T ss_dssp EEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred EEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcE
Confidence 999999999999999987654 6789999999999974 4 799999999999999 666555 6778999999
Q ss_pred EEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCcee
Q 001184 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK 580 (1130)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1130)
.++++ ++.++++++.||.|++||+++......+..+...+.++.+ +++++++++. ++.|++||+++++.+
T Consensus 260 ~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~----dg~i~iwd~~~~~~~ 329 (435)
T 1p22_A 260 NVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACL 329 (435)
T ss_dssp EEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTCCEE
T ss_pred EEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCCCCEE
Confidence 99988 4479999999999999999999999899999999999988 4689999886 899999999999999
Q ss_pred EEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---------eeEEEeccCCCCCcceEEEcCCCCEEEEEe
Q 001184 581 RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN---------MLTSTEAEGGLPSLPRLRFNKEGNLLVVTT 651 (1130)
Q Consensus 581 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---------~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~ 651 (1130)
..+.+|.. .+.+++| +++++++|+.||.|++||+.++. .+..+..+.. .|.+++| ++.+|++++
T Consensus 330 ~~~~~h~~-~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~--~~~~l~s~s 402 (435)
T 1p22_A 330 RVLEGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG--RVFRLQF--DEFQIVSSS 402 (435)
T ss_dssp EEECCCSS-CEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS--CCCCEEE--CSSCEEECC
T ss_pred EEEeCCcC-cEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCC--CeEEEEe--CCCEEEEEe
Confidence 99998766 7888888 78899999999999999987665 6677765544 7999999 678899999
Q ss_pred CCCcEEEEEcCCCc
Q 001184 652 ADQGIKILANADGL 665 (1130)
Q Consensus 652 ~dg~i~iw~~~~~~ 665 (1130)
.||.|++||+.+..
T Consensus 403 ~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 403 HDDTILIWDFLNDP 416 (435)
T ss_dssp SSSEEEEEC-----
T ss_pred CCCEEEEEECCCCC
Confidence 99999999997763
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-31 Score=305.83 Aligned_cols=244 Identities=12% Similarity=0.080 Sum_probs=199.5
Q ss_pred ecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001184 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1130)
Q Consensus 405 ~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd 484 (1130)
...+.+.|.+++|+|||++||+|+.|+.|++||+.++. ......+.+|...|.+++|+|+++ +|++++.|++|++||
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG-WKHARTFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYVYE 83 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE-EEECCCBCCCSSCEEEEEECTTTC--CEEEEETTSSEEEC-
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc-eEEEEEEecCCceEEEEEEeCCCC--EEEEEeCCCeEEEEE
Confidence 44567799999999999999999999999999999872 122236789999999999999998 799999999999999
Q ss_pred -cCCC---eeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcc---eeeecC-CCccEEEEEEecCCCeE
Q 001184 485 -LSGR---KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS---RVDYDA-PGLWCTTMLYSADGSRL 556 (1130)
Q Consensus 485 -~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~-~~~~v~~~~~s~~~~~l 556 (1130)
.+++ ....+.+|...|.+++|++ ++.+|++++.|+.|++||++.... ...+.. |...|.+++|+|++++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 161 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLNRAATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLL 161 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCT--TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEE
T ss_pred cCCCCceeeeeEecccCCceEEEEECC--CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEE
Confidence 5555 5777889999999999976 557999999999999999998763 556666 88899999999999999
Q ss_pred EEeeecCCCCcEEEEeeCC------------------CCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001184 557 FSCGTSKEGDSHLVEWNES------------------EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMD 618 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 618 (1130)
++++. ++.|++||+. .++++..+ +|. ..+.+++|+|++++|++++.||.|++||+.
T Consensus 162 ~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~ 235 (377)
T 3dwl_C 162 AAGCA----DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSG-GWVHAVGFSPSGNALAYAGHDSSVTIAYPS 235 (377)
T ss_dssp EEEES----SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCS-SSEEEEEECTTSSCEEEEETTTEEC-CEEC
T ss_pred EEEeC----CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCC-ceEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 99986 8999999985 34455555 544 489999999999999999999999999999
Q ss_pred CCce----eEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001184 619 NVNM----LTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANA 662 (1130)
Q Consensus 619 ~~~~----~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~ 662 (1130)
+++. +..+..+.. .|.+++|+|++++|++++.++.+ +|+..
T Consensus 236 ~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 236 APEQPPRALITVKLSQL--PLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp STTSCEEECCCEECSSS--CEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCCCcceeeEeecCCCC--ceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 9887 566665543 79999999999999988776666 66654
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2.7e-31 Score=293.62 Aligned_cols=249 Identities=16% Similarity=0.301 Sum_probs=204.1
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecC--CCceEEEEEcCCCcEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIR 481 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d--~~~l~l~s~s~d~~v~ 481 (1130)
++.+|.+.|.+++|+|||++||+|+.|++|++||+.++... ....+.+|.+.|++++|+++ ++ +|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 57799999999999999999999999999999999887532 23468899999999999863 67 799999999999
Q ss_pred EEe-cCC--CeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcc---eeeecCCCccEEEEEEecC---
Q 001184 482 VWD-LSG--RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS---RVDYDAPGLWCTTMLYSAD--- 552 (1130)
Q Consensus 482 iwd-~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~s~~--- 552 (1130)
+|| .++ ..+..+.+|...|.+++|+|..++.+|++++.|++|++||++.... ...+..|...+.+++|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 999 555 4667788999999999999876678999999999999999987543 2345667778999999997
Q ss_pred --------------CCeEEEeeecCCCCcEEEEeeCCCC---ceeEEEecccCceeEEEEEcCCC----CEEEEEeCCCc
Q 001184 553 --------------GSRLFSCGTSKEGDSHLVEWNESEG---ALKRTYIGFRKKSAGVVQFDTTR----NRILAAGEDNQ 611 (1130)
Q Consensus 553 --------------~~~l~~~~~~~~~~~~i~~wd~~~~---~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~ 611 (1130)
+++|++++. |+.|++||.+.+ +.+..+.+|.. .|.+++|+|++ ++|++++.|++
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~----D~~v~lWd~~~~~~~~~~~~l~~h~~-~V~~v~~sp~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGC----DNLIKLWKEEEDGQWKEEQKLEAHSD-WVRDVAWAPSIGLPTSTIASCSQDGR 239 (316)
T ss_dssp ------CCSCCCCCCCBEECCBT----TSBCCEEEECTTSCEEEEECCBCCSS-CEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred ccccccccccCccccceEEEecC----CCeEEEEEeCCCCccceeeecccCCC-ceEEEEecCCCCCCCceEEEEcCCCe
Confidence 468888876 899999999755 35666777665 89999999986 79999999999
Q ss_pred EEEEeCCCCc----eeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001184 612 IKFWDMDNVN----MLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANA 662 (1130)
Q Consensus 612 i~vwd~~~~~----~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~ 662 (1130)
|++|++.+.. ....+..+ ...|.+++|+|++++|++++.|+.|++|+..
T Consensus 240 v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 240 VFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9999987631 12223333 3479999999999999999999999999975
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.3e-30 Score=291.84 Aligned_cols=288 Identities=16% Similarity=0.220 Sum_probs=238.2
Q ss_pred cceeeec-cCCCCEEEEEEecC---CCeEEEEEeCcCeEEEEeCCC-CceeecccceeeeccccccceeeeeecCCCccE
Q 001184 338 RAVACTM-HQGSSVVSMDFHPF---HHTLLVVGCGDGEITLWDVGL-RERLVSKPFKIWDMSNCSMMLQAAIVKDSSISV 412 (1130)
Q Consensus 338 ~~~~~~~-~h~~~V~~v~fspd---g~~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 412 (1130)
...+..+ +|.+.|++++|+|+ |+ +|++|+.||.|+|||+.+ ++.+. ..+.+|...|
T Consensus 29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~------------------~~~~~h~~~v 89 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIP------------------KAQQMHTGPV 89 (368)
T ss_dssp TCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEE------------------EEEEECSSCE
T ss_pred cceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeE------------------EEeccccCCE
Confidence 3344455 59999999999999 46 699999999999999987 44431 1467899999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEE--ecCCCceEEEEEcCCCcEEEEe-cCCCe
Q 001184 413 SRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAF--SYPNKQLCIVTCGDDKLIRVWD-LSGRK 489 (1130)
Q Consensus 413 ~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~--s~d~~~l~l~s~s~d~~v~iwd-~~~~~ 489 (1130)
.+++|+|++++|++++.||.|++||+.+++... +.+|...|.+++| +++++ ++++++.|+.|++|| .+++.
T Consensus 90 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~ 163 (368)
T 3mmy_A 90 LDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSSNP 163 (368)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCSSC
T ss_pred EEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCCcE
Confidence 999999999999999999999999999887543 5679999999999 88888 899999999999999 78888
Q ss_pred eeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeec--CCCccEEEEEEecCCCe----EEEeeecC
Q 001184 490 LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD--APGLWCTTMLYSADGSR----LFSCGTSK 563 (1130)
Q Consensus 490 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~----l~~~~~~~ 563 (1130)
+..+..|. .+.++.+.. ..+++++.++.+++|+++......... .....+.++.+.++... +++++.
T Consensus 164 ~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 236 (368)
T 3mmy_A 164 MMVLQLPE-RCYCADVIY----PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI-- 236 (368)
T ss_dssp SEEEECSS-CEEEEEEET----TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET--
T ss_pred EEEEecCC-CceEEEecC----CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC--
Confidence 88888665 566666543 478899999999999998766554332 23445677777776655 888875
Q ss_pred CCCcEEEEeeCCCC---ceeEEEecccCc-----------eeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEecc
Q 001184 564 EGDSHLVEWNESEG---ALKRTYIGFRKK-----------SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE 629 (1130)
Q Consensus 564 ~~~~~i~~wd~~~~---~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 629 (1130)
++.|++||+... .....+.+|... .+.+++|+|++++|++++.||.|++||+.+++.+..+..+
T Consensus 237 --dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 314 (368)
T 3mmy_A 237 --EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL 314 (368)
T ss_dssp --TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred --CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCC
Confidence 899999999887 567777776543 5999999999999999999999999999999998888765
Q ss_pred CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 630 GGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 630 ~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
.. .|.+++|+|++++|++++.|+..+.|++
T Consensus 315 ~~--~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 315 DQ--PISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp SS--CEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred CC--CceEEEECCCCCeEEEEecccccccccc
Confidence 44 8999999999999999999886555543
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=299.83 Aligned_cols=295 Identities=14% Similarity=0.191 Sum_probs=240.4
Q ss_pred CEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC-CCCEEEEE
Q 001184 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNFIGVA 427 (1130)
Q Consensus 349 ~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~las~ 427 (1130)
....++++|+...++++|+.||.|+||++........ . ...+.+|.+.|.+++|+| ++++||+|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~-~--------------~~~~~~h~~~V~~~~~~p~~~~~l~s~ 100 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK-N--------------VPLVCGHTAPVLDIAWCPHNDNVIASG 100 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT-T--------------CCCBCCCSSCEEEEEECTTCTTEEEEE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC-C--------------CceEecCCCCEEEEEeCCCCCCEEEEE
Confidence 4556899999876667789999999999965433210 1 114679999999999999 99999999
Q ss_pred eCCCeEEEEEecCCccc----eeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEe--cCCCcCE
Q 001184 428 FTKHLIHLYTYQGSNDL----CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQF--EGHEAPV 500 (1130)
Q Consensus 428 ~~d~~i~vwd~~~~~~~----~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~--~~h~~~v 500 (1130)
+.||+|++||+.++... .....+.+|...|.+++|+|+++. +|++++.|+.|++|| .+++.+..+ .+|...|
T Consensus 101 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 179 (402)
T 2aq5_A 101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTI 179 (402)
T ss_dssp ETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSCE
T ss_pred eCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCce
Confidence 99999999999987421 233467899999999999999843 799999999999999 888888899 8899999
Q ss_pred EEEeecccCCccEEEEEecCCcEEEEEccCCcceeee-cCCCcc-EEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc
Q 001184 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY-DAPGLW-CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1130)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1130)
.+++|++ ++.+|++++.||.|++||+++......+ ..+... +.++.|+|++++++++. +...++.|++||+.+++
T Consensus 180 ~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 180 YSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGF-SRMSERQVALWDTKHLE 256 (402)
T ss_dssp EEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEE-CTTCCEEEEEEETTBCS
T ss_pred EEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEec-cCCCCceEEEEcCcccc
Confidence 9999976 5689999999999999999998888777 566654 89999999999988873 11238999999998876
Q ss_pred e-eEEEecccCceeEEEEEcCCCCEEEE-EeCCCcEEEEeCCCCce-eEEEeccCCCCCcceEEEcCCCCEEEEEeCCCc
Q 001184 579 L-KRTYIGFRKKSAGVVQFDTTRNRILA-AGEDNQIKFWDMDNVNM-LTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQG 655 (1130)
Q Consensus 579 ~-~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~ 655 (1130)
. +......+...+.+++|+|+++++++ ++.||.|++||+.+++. +..+..+.+...+.+++|+|++.++++ .++.
T Consensus 257 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~ 334 (402)
T 2aq5_A 257 EPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEI 334 (402)
T ss_dssp SCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEE
T ss_pred CCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--ccee
Confidence 4 44444334447899999999999875 55799999999999884 555555555568999999999988764 5679
Q ss_pred EEEEEcCCC
Q 001184 656 IKILANADG 664 (1130)
Q Consensus 656 i~iw~~~~~ 664 (1130)
+++|++.++
T Consensus 335 ~~~~~l~~~ 343 (402)
T 2aq5_A 335 ARFYKLHER 343 (402)
T ss_dssp EEEEEEETT
T ss_pred EEEEEcCCC
Confidence 999999775
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-29 Score=289.49 Aligned_cols=285 Identities=16% Similarity=0.247 Sum_probs=234.2
Q ss_pred ccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCC
Q 001184 767 ASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDS 846 (1130)
Q Consensus 767 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~ 846 (1130)
.-.+..++|++++ +++++.|++|++||..+ |.........+|...|++++|+|||+
T Consensus 105 d~y~~~l~wS~~n--~lAvgld~tV~lWd~~t----------------------g~~~~~~~~~~~~~~V~sv~fspdg~ 160 (420)
T 4gga_A 105 DYYLNLVDWSSGN--VLAVALDNSVYLWSASS----------------------GDILQLLQMEQPGEYISSVAWIKEGN 160 (420)
T ss_dssp CTTCBCEEECTTS--EEEEEETTEEEEEETTT----------------------CCEEEEEECCSTTCCEEEEEECTTSS
T ss_pred cccceeEEECCCC--EEEEEeCCEEEEEECCC----------------------CCEEEEEEecCCCCcEEEEEECCCCC
Confidence 3456779999764 45556799999987543 33322222235788999999999999
Q ss_pred EEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeec-CeEEEEEecCCCCeeEEE
Q 001184 847 YVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV-DEVKTKLKGHQKHITGLA 924 (1130)
Q Consensus 847 ~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~ 924 (1130)
+|++|+ ||.|+|||+.+++++..+.+|...+.+++++ +.+|++|+.|+.+++||... ...+..+.+|...+..+.
T Consensus 161 ~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~ 237 (420)
T 4gga_A 161 YLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR 237 (420)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred EEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccceeeEEecccccceeeee
Confidence 999998 8999999999999999999999999988875 47999999999999999886 456778999999999999
Q ss_pred EccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEE-E---EcCCcEEEEECCCceeee
Q 001184 925 FSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLL-V---NHETQLAIYDGSKMECIR 1000 (1130)
Q Consensus 925 ~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-~---~~d~~i~v~d~~~~~~~~ 1000 (1130)
|+|+++++++++.|+.+++|+...++.......... .+...|.+++|+|++..++ + +.|+.|++||+.+++++.
T Consensus 238 ~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~--~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 238 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT--QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp ECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEEC--CCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEE
T ss_pred ecCCCCeeeeeeccccceEEeeccccccceeeeeec--ccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccce
Confidence 999999999999999999999998764333222222 2337899999999766444 3 258999999999999998
Q ss_pred eeecCCCCCCCeEEEEECCCCCEEEEEe--CCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEE
Q 001184 1001 QWVPQDVLSSPISSAAYSCNSQLIYATF--TDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQL 1078 (1130)
Q Consensus 1001 ~~~~~~~~~~~v~~v~~s~dg~~l~t~~--~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 1078 (1130)
.+..+ ..+.++.|+++++.+++++ .|+.|+|||+.+++.+..+. +|...+++++|+| ++.+|
T Consensus 316 ~~~~~----~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~-----------gH~~~V~~l~~sp-dg~~l 379 (420)
T 4gga_A 316 AVDAH----SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-----------GHTSRVLSLTMSP-DGATV 379 (420)
T ss_dssp EEECS----SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-----------CCSSCEEEEEECT-TSSCE
T ss_pred eeccc----cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc-----------CCCCCEEEEEEcC-CCCEE
Confidence 88765 5899999999999888876 79999999999999888775 3445677889999 58899
Q ss_pred EEEeCCCcEEEEeCCCCc
Q 001184 1079 AVGLTDGSVKVIEPSETE 1096 (1130)
Q Consensus 1079 ~s~~~Dg~v~vW~~~~~~ 1096 (1130)
+||+.|++|++||+.+..
T Consensus 380 ~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 380 ASAAADETLRLWRCFELD 397 (420)
T ss_dssp EEEETTTEEEEECCSCSS
T ss_pred EEEecCCeEEEEECCCCC
Confidence 999999999999997654
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=290.06 Aligned_cols=284 Identities=15% Similarity=0.177 Sum_probs=236.8
Q ss_pred CCCcc--EEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001184 407 DSSIS--VSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1130)
Q Consensus 407 ~h~~~--V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd 484 (1130)
+|... +.+++|++ ..+++++.|+.|++||+.+++..... ...|...|.+++|+|+++ +|++|+.||.|++||
T Consensus 89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iwd 162 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALA--ETDESTYVASVKWSHDGS--FLSVGLGNGLVDIYD 162 (401)
T ss_dssp TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEE--ECCTTCCEEEEEECTTSS--EEEEEETTSCEEEEE
T ss_pred CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEee--ecCCCCCEEEEEECCCCC--EEEEECCCCeEEEEE
Confidence 55444 55567765 56788889999999999998755421 223899999999999999 899999999999999
Q ss_pred -cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccC-CcceeeecCCCccEEEEEEecCCCeEEEeeec
Q 001184 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN-VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
.+++.+..+.+|...|.+++|+ +.++++++.||.|++||++. ......+..|...|.+++|+|++++|++++.
T Consensus 163 ~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~- 237 (401)
T 4aez_A 163 VESQTKLRTMAGHQARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGN- 237 (401)
T ss_dssp TTTCCEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET-
T ss_pred CcCCeEEEEecCCCCceEEEEEC----CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeC-
Confidence 8899999999999999999983 36999999999999999984 4556678889999999999999999999986
Q ss_pred CCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCC-EEEEEe--CCCcEEEEeCCCCceeEEEeccCCCCCcceEE
Q 001184 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN-RILAAG--EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLR 639 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~ 639 (1130)
++.|++||+.+++.+..+..|.. .+.+++|+|++. .+++++ .|+.|++||+.+++.+..+.... .+.+++
T Consensus 238 ---d~~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~---~v~~~~ 310 (401)
T 4aez_A 238 ---DNVVQIWDARSSIPKFTKTNHNA-AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGS---QVTSLI 310 (401)
T ss_dssp ---TSCEEEEETTCSSEEEEECCCSS-CCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSS---CEEEEE
T ss_pred ---CCeEEEccCCCCCccEEecCCcc-eEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCC---cEEEEE
Confidence 89999999999999998887665 899999999775 555554 79999999999999988886433 699999
Q ss_pred EcCCCCEEEEEe--CCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCccc
Q 001184 640 FNKEGNLLVVTT--ADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTI 717 (1130)
Q Consensus 640 ~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~ 717 (1130)
|+|+++.+++++ .||.|++|++.++.. .
T Consensus 311 ~s~~~~~l~~~~g~~dg~i~v~~~~~~~~-~------------------------------------------------- 340 (401)
T 4aez_A 311 WSPHSKEIMSTHGFPDNNLSIWSYSSSGL-T------------------------------------------------- 340 (401)
T ss_dssp ECSSSSEEEEEECTTTCEEEEEEEETTEE-E-------------------------------------------------
T ss_pred ECCCCCeEEEEeecCCCcEEEEecCCccc-e-------------------------------------------------
Confidence 999999999954 899999999866410 0
Q ss_pred ccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecC
Q 001184 718 LNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWN 797 (1130)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~ 797 (1130)
..+. + .+|...|.+++|+|+|..+++++.||.+++|++.
T Consensus 341 ------------------------~~~~--------------~---~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 341 ------------------------KQVD--------------I---PAHDTRVLYSALSPDGRILSTAASDENLKFWRVY 379 (401)
T ss_dssp ------------------------EEEE--------------E---ECCSSCCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred ------------------------eEEE--------------e---cCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 0000 1 2277889999999999999999999999999876
Q ss_pred CC
Q 001184 798 RT 799 (1130)
Q Consensus 798 ~~ 799 (1130)
.+
T Consensus 380 ~~ 381 (401)
T 4aez_A 380 DG 381 (401)
T ss_dssp C-
T ss_pred CC
Confidence 53
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=285.20 Aligned_cols=296 Identities=10% Similarity=0.125 Sum_probs=218.7
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC--CC
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP--DG 421 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg 421 (1130)
.+|.+.|++++|+|+++ +|++|+.||.|+|||+.++..... ....+.+|...|.+++|+| |+
T Consensus 8 ~gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~d~ 71 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWE---------------LSDSWRAHDSSIVAIDWASPEYG 71 (351)
T ss_dssp CCCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEE---------------EEEEEECCSSCEEEEEECCGGGC
T ss_pred cccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcce---------------ecceeccCCCcEEEEEEcCCCCC
Confidence 36999999999999998 599999999999999987643211 1124679999999999999 69
Q ss_pred CEEEEEeCCCeEEEEEecCCccc------eeeeeeecCCCCeeEEEEecC--CCceEEEEEcCCCcEEEEe-cCCCeeeE
Q 001184 422 NFIGVAFTKHLIHLYTYQGSNDL------CQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIRVWD-LSGRKLFQ 492 (1130)
Q Consensus 422 ~~las~~~d~~i~vwd~~~~~~~------~~~~~~~~h~~~V~~i~~s~d--~~~l~l~s~s~d~~v~iwd-~~~~~~~~ 492 (1130)
++|++|+.||.|++||+.++... .....+.+|...|.+++|+|+ +. ++++++.|+.|++|| .+++.+..
T Consensus 72 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~ 149 (351)
T 3f3f_A 72 RIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDLRS 149 (351)
T ss_dssp SEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCTTC
T ss_pred CEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHhcc
Confidence 99999999999999999886421 334467899999999999999 88 899999999999999 66665544
Q ss_pred ec-------------CCCcCEEEEeeccc-CCccEEEEEecCCcEEEEEccCCcc--eeeecCCCccEEEEEEecCC---
Q 001184 493 FE-------------GHEAPVYSVCPHQK-ENIHFIFSTAVDGKIKAWLYDNVGS--RVDYDAPGLWCTTMLYSADG--- 553 (1130)
Q Consensus 493 ~~-------------~h~~~v~~~~~~~~-~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~~~--- 553 (1130)
+. +|...+.+++|+|. .++..+++++.|+.+.+|+...... ...+..|...|.+++|+|++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~ 229 (351)
T 3f3f_A 150 WTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRW 229 (351)
T ss_dssp CEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCS
T ss_pred ccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCc
Confidence 33 68889999999875 1357999999999998888776654 45677788899999999998
Q ss_pred -CeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEE----eCCCcEEEEeCCCCceeEEEec
Q 001184 554 -SRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAA----GEDNQIKFWDMDNVNMLTSTEA 628 (1130)
Q Consensus 554 -~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~dg~i~vwd~~~~~~~~~~~~ 628 (1130)
++|++++. ++.|++||+.++........... ........+....+..+ .....+.+|+....+.+..+..
T Consensus 230 ~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (351)
T 3f3f_A 230 YQLIATGCK----DGRIRIFKITEKLSPLASEESLT-NSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD 304 (351)
T ss_dssp SEEEEEEET----TSCEEEEEEEECC----------------------------------------CCSEEEEEEEEECT
T ss_pred ceEEEEEcC----CCeEEEEeCCCCcCccccCCccc-ceeccCCCcccccccccccccccceeeeecccccccEEEEEec
Confidence 78999886 89999999987655444332221 22233333333333333 3445566677666677777765
Q ss_pred cCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 629 EGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 629 ~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
|.. .|.+++|+|++++|++++.||.|++|++.++
T Consensus 305 h~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 305 HNG--EVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp TSS--CEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred ccc--cEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 544 7999999999999999999999999999876
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-28 Score=270.84 Aligned_cols=283 Identities=17% Similarity=0.244 Sum_probs=230.5
Q ss_pred ceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEE
Q 001184 769 KVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYV 848 (1130)
Q Consensus 769 ~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l 848 (1130)
....++||+++ +++++.|++|++||+.+ |+.+......+|...|.+++|+|++++|
T Consensus 27 y~~~l~WS~~~--~lAvg~D~tV~iWd~~t----------------------g~~~~~~~~~~~~~~V~~v~~~~~~~~l 82 (318)
T 4ggc_A 27 YLNLVDWSSGN--VLAVALDNSVYLWSASS----------------------GDILQLLQMEQPGEYISSVAWIKEGNYL 82 (318)
T ss_dssp TCBCEEECTTS--EEEEEETTEEEEEETTT----------------------CCEEEEEECCSTTCCEEEEEECTTSSEE
T ss_pred cceEEEECCCC--EEEEEeCCEEEEEECCC----------------------CCEEEEEEecCCCCeEEEEEECCCCCEE
Confidence 35678999886 45556799999987543 3333222223688899999999999999
Q ss_pred EEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecC-eEEEEEecCCCCeeEEEEc
Q 001184 849 MSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD-EVKTKLKGHQKHITGLAFS 926 (1130)
Q Consensus 849 a~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~s 926 (1130)
++|+ ||+|++||+.+++++..+.+|...+.++.+. +.++++|+.++.+++|+.... ..+..+.+|...+..++++
T Consensus 83 ~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (318)
T 4ggc_A 83 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 159 (318)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred EEEECCCcEEEeecCCceeEEEecCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEc
Confidence 9998 8999999999999999999999988876664 579999999999999998865 5667889999999999999
Q ss_pred cCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE----EcCCcEEEEECCCceeeeee
Q 001184 927 TNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV----NHETQLAIYDGSKMECIRQW 1002 (1130)
Q Consensus 927 ~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~----~~d~~i~v~d~~~~~~~~~~ 1002 (1130)
+++++|++++.|++|++||+.+++.......... .....+..++++|++..++. +.++.|++||..........
T Consensus 160 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~ 237 (318)
T 4ggc_A 160 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT--QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV 237 (318)
T ss_dssp TTSSEEEEEETTSCEEEEESSCBTTBSCCSEEEC--CCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEEecCcceeEEECCCCcccccceeeec--ccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc
Confidence 9999999999999999999998765433332222 22367899999998765442 35789999999988877665
Q ss_pred ecCCCCCCCeEEEEECCCCCEEEEEe--CCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEE
Q 001184 1003 VPQDVLSSPISSAAYSCNSQLIYATF--TDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAV 1080 (1130)
Q Consensus 1003 ~~~~~~~~~v~~v~~s~dg~~l~t~~--~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 1080 (1130)
.. ...+..++|+++++.+++++ .|+.|+|||+.+++.+..+.. |...+.+++|+| ++.+|+|
T Consensus 238 ~~----~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~g-----------H~~~V~~l~~sp-dg~~l~S 301 (318)
T 4ggc_A 238 DA----HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG-----------HTSRVLSLTMSP-DGATVAS 301 (318)
T ss_dssp EC----SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC-----------CSSCEEEEEECT-TSSCEEE
T ss_pred cc----eeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcC-----------CCCCEEEEEEcC-CCCEEEE
Confidence 43 46899999999999888765 799999999999998887753 344567789999 5789999
Q ss_pred EeCCCcEEEEeCCCCc
Q 001184 1081 GLTDGSVKVIEPSETE 1096 (1130)
Q Consensus 1081 ~~~Dg~v~vW~~~~~~ 1096 (1130)
|+.||+|+|||+.+..
T Consensus 302 ~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 302 AAADETLRLWRCFELD 317 (318)
T ss_dssp EETTTEEEEECCSCCC
T ss_pred EecCCeEEEEECCCCC
Confidence 9999999999997654
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-29 Score=291.10 Aligned_cols=248 Identities=12% Similarity=0.182 Sum_probs=204.7
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCcc--------ceeeeeeecCC------------CCeeEEEEecCC
Q 001184 407 DSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSND--------LCQSLEIDAHV------------GGVNDLAFSYPN 466 (1130)
Q Consensus 407 ~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~--------~~~~~~~~~h~------------~~V~~i~~s~d~ 466 (1130)
.|.+.|++++|+|||++||+|+.||.|+|||+.+++. ......+.+|. +.|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 4678999999999999999999999999999987652 11344678998 889999999998
Q ss_pred --CceEEEEEcCCCcEEEEe-cCCCee---------------------------------------eE-ecCCCcCEEEE
Q 001184 467 --KQLCIVTCGDDKLIRVWD-LSGRKL---------------------------------------FQ-FEGHEAPVYSV 503 (1130)
Q Consensus 467 --~~l~l~s~s~d~~v~iwd-~~~~~~---------------------------------------~~-~~~h~~~v~~~ 503 (1130)
. .+++++.|++|++|| .++... .. ..+|...|.++
T Consensus 106 ~~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 106 NAA--QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp SSS--EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred Ccc--eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 5 799999999999999 443221 12 36899999999
Q ss_pred eecccCCccEEEEEecCCcEEEEEccCCcceee--------ecCCCccEEEEEEecCC-CeEEEeeecCCCCcEEEEeeC
Q 001184 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD--------YDAPGLWCTTMLYSADG-SRLFSCGTSKEGDSHLVEWNE 574 (1130)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~--------~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~ 574 (1130)
+|++ ++.+|+++ .|+.|++||++....... +..|...|.+++|+|++ ++|++++. ++.|++||+
T Consensus 184 ~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~ 256 (447)
T 3dw8_B 184 SINS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS----KGTIRLCDM 256 (447)
T ss_dssp EECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET----TSCEEEEET
T ss_pred EEcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC----CCeEEEEEC
Confidence 9976 56799998 799999999985443332 55778899999999998 89999986 899999999
Q ss_pred CCCce----eEEEecccC-----------ceeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CceeEEEeccCCCCC----
Q 001184 575 SEGAL----KRTYIGFRK-----------KSAGVVQFDTTRNRILAAGEDNQIKFWDMDN-VNMLTSTEAEGGLPS---- 634 (1130)
Q Consensus 575 ~~~~~----~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~---- 634 (1130)
++++. ...+.++.. ..+.+++|+|++++|++++. +.|++||+.+ ++.+..+..+.....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~ 335 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCS 335 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHH
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccc
Confidence 99887 788887654 27999999999999999999 9999999997 888888776643111
Q ss_pred ---------cceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 635 ---------LPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 635 ---------i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+..++|+|++++|++++.||.|++||+.++
T Consensus 336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence 234999999999999999999999999887
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-29 Score=278.87 Aligned_cols=250 Identities=11% Similarity=-0.019 Sum_probs=212.3
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
+..+|.+.|.+++|+|++++|++++.|+.|++||+.++........+.+|...|.+++|+|+++. +|++|+.|+.|++|
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEE
Confidence 35689999999999999999999999999999999987633233356689999999999999872 37899999999999
Q ss_pred ec-CCCeeeEecC--CCcCEEEEeecccCCccEEEEEecCCcEEEEEccC---------CcceeeecCCCccEEEEEEec
Q 001184 484 DL-SGRKLFQFEG--HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN---------VGSRVDYDAPGLWCTTMLYSA 551 (1130)
Q Consensus 484 d~-~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~---------~~~~~~~~~~~~~v~~~~~s~ 551 (1130)
|. .......+.+ |...|.+++|++ +.+|++++.|+.|++||+++ ......+. +...+.+++|+|
T Consensus 85 d~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 85 DLIGSPSFQALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp CSSSSSSEEECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred EeccCCceEeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 97 8888889999 999999999987 57999999999999999987 55555555 777899999999
Q ss_pred CCCeEEEeeecCCCCcEEEEeeCCC-Cce-eEEEecccCceeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCC------ce
Q 001184 552 DGSRLFSCGTSKEGDSHLVEWNESE-GAL-KRTYIGFRKKSAGVVQFDT-TRNRILAAGEDNQIKFWDMDNV------NM 622 (1130)
Q Consensus 552 ~~~~l~~~~~~~~~~~~i~~wd~~~-~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~------~~ 622 (1130)
++ +++++. ++.|++||+++ +.. .......+...+.+++|+| +++++++++.||.|++|+++.. +.
T Consensus 161 ~~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~ 234 (342)
T 1yfq_A 161 SR--LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK 234 (342)
T ss_dssp SE--EEEEES----TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTT
T ss_pred Cc--EEEEeC----CCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccc
Confidence 88 777765 89999999988 543 2333333445899999999 9999999999999999999887 77
Q ss_pred eEEEeccCC-------CCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 623 LTSTEAEGG-------LPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 623 ~~~~~~~~~-------~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
...+..+.. ...|.+++|+|++++|++++.||.|++||+.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred ceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH
Confidence 777776643 347999999999999999999999999998766
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-29 Score=284.18 Aligned_cols=252 Identities=14% Similarity=0.209 Sum_probs=210.9
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCC--ceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC--
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLR--ERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD-- 420 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-- 420 (1130)
+|.+.|++++|+|+|+ +||+|+.||.|+|||+..+ +.+. .+.+|...|.+++|+|+
T Consensus 9 ~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~ 68 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHPKF 68 (379)
T ss_dssp ECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEE-------------------EECCCSSCEEEEEECCGGG
T ss_pred CCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceeee-------------------EecCCCCcEEEEEeCCCCC
Confidence 5999999999999998 5999999999999999743 3322 47799999999999987
Q ss_pred CCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecC--CCceEEEEEcCCCcEEEEe-cCC--CeeeEecC
Q 001184 421 GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIRVWD-LSG--RKLFQFEG 495 (1130)
Q Consensus 421 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d--~~~l~l~s~s~d~~v~iwd-~~~--~~~~~~~~ 495 (1130)
+++|++|+.||.|++||+.+++. .....+.+|...|.+++|+|+ +. ++++++.|+.|++|| ..+ .....+.+
T Consensus 69 ~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 145 (379)
T 3jrp_A 69 GTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIIDA 145 (379)
T ss_dssp CSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCCEEEEEC
T ss_pred CCEEEEeccCCEEEEEEcCCCce-eEeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCceeeEEecC
Confidence 99999999999999999999762 233357789999999999999 88 899999999999999 444 34556778
Q ss_pred CCcCEEEEeecccC-----------CccEEEEEecCCcEEEEEccCCcce----eeecCCCccEEEEEEecC---CCeEE
Q 001184 496 HEAPVYSVCPHQKE-----------NIHFIFSTAVDGKIKAWLYDNVGSR----VDYDAPGLWCTTMLYSAD---GSRLF 557 (1130)
Q Consensus 496 h~~~v~~~~~~~~~-----------~~~~l~s~s~dg~i~vwd~~~~~~~----~~~~~~~~~v~~~~~s~~---~~~l~ 557 (1130)
|...|.+++|+|.. ++.++++++.||.|++||++..... ..+..|...|.+++|+|+ +++|+
T Consensus 146 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~ 225 (379)
T 3jrp_A 146 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLA 225 (379)
T ss_dssp CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEE
Confidence 99999999998742 5689999999999999999876543 466778889999999999 89999
Q ss_pred EeeecCCCCcEEEEeeCCCCcee--EEEecc--cCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 001184 558 SCGTSKEGDSHLVEWNESEGALK--RTYIGF--RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNML 623 (1130)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 623 (1130)
+++. ++.|++||+.++... ...... +...+.+++|+|++++|++++.||.|++|++..+...
T Consensus 226 s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 291 (379)
T 3jrp_A 226 SVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 291 (379)
T ss_dssp EEET----TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEE
T ss_pred EEeC----CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcc
Confidence 9986 899999999886421 122211 3447999999999999999999999999999865433
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-29 Score=284.21 Aligned_cols=253 Identities=19% Similarity=0.287 Sum_probs=215.8
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecC--CCceEEEEEcCCCcEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIR 481 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d--~~~l~l~s~s~d~~v~ 481 (1130)
++.+|.+.|++++|+||+++||+|+.||.|++||+..+. ......+.+|.+.|++++|+++ ++ +|++++.|+.|+
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~ 82 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 82 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEE
Confidence 578999999999999999999999999999999998433 2333467899999999999987 77 899999999999
Q ss_pred EEe-cCCC--eeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCc--ceeeecCCCccEEEEEEec-----
Q 001184 482 VWD-LSGR--KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG--SRVDYDAPGLWCTTMLYSA----- 551 (1130)
Q Consensus 482 iwd-~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~----- 551 (1130)
+|| .+++ .+..+.+|...|.+++|++..++.+|++++.|+.|++||++... ....+..+...|.+++|+|
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence 999 6665 77888899999999999876446899999999999999998874 3446677888999999999
Q ss_pred --------CCCeEEEeeecCCCCcEEEEeeCCCCc----eeEEEecccCceeEEEEEcCC---CCEEEEEeCCCcEEEEe
Q 001184 552 --------DGSRLFSCGTSKEGDSHLVEWNESEGA----LKRTYIGFRKKSAGVVQFDTT---RNRILAAGEDNQIKFWD 616 (1130)
Q Consensus 552 --------~~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~vwd 616 (1130)
++.++++++. ++.|++||++++. ....+.+|.. .+.+++|+|+ +++|++++.||.|++||
T Consensus 163 ~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237 (379)
T ss_dssp -------CTTCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred cccccCCCCCCEEEEEeC----CCeEEEEEecCCCcceeeEEEEecccC-cEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence 6999999986 8999999998765 3456666655 8999999999 89999999999999999
Q ss_pred CCCCc---eeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 617 MDNVN---MLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 617 ~~~~~---~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+.++. .........+...|.+++|+|++++|++++.||.|++|++..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 238 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 99875 2333333345558999999999999999999999999998754
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-28 Score=283.14 Aligned_cols=233 Identities=20% Similarity=0.311 Sum_probs=206.9
Q ss_pred cCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-
Q 001184 406 KDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD- 484 (1130)
Q Consensus 406 ~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd- 484 (1130)
.+|...|.+++| |+++|++|+.||.|++||+.+++... .+.+|.+.|.+++| +++ ++++|+.||+|++||
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence 367778998887 89999999999999999999987554 67899999999999 677 899999999999999
Q ss_pred cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcce---eeecCCCccEEEEEEecCCCeEEEeee
Q 001184 485 LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR---VDYDAPGLWCTTMLYSADGSRLFSCGT 561 (1130)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1130)
.+++.+..+.+|...|.+++|++ ..+++++.||.|++||+++.... ..+..|...|.+++| +++++++++.
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFNN----GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECCT----TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CCCcEEEEEcCCCCcEEEEEEcC----CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 88999999999999999999852 58999999999999999887765 567788889999998 7889999986
Q ss_pred cCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEc
Q 001184 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN 641 (1130)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s 641 (1130)
++.|++||+.+++.+..+.+|.. .+.++.+ +++++++|+.||.|++||+.+++.+..+..+.. .|.+++|
T Consensus 275 ----dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~~- 344 (435)
T 1p22_A 275 ----DRTIKVWNTSTCEFVRTLNGHKR-GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRF- 344 (435)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCSS-CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEC-
T ss_pred ----CCeEEEEECCcCcEEEEEcCCCC-cEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC--cEEEEEe-
Confidence 89999999999999999998766 7888888 468999999999999999999999988876554 7899988
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCC
Q 001184 642 KEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 642 ~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
++.+|++|+.||.|++||+.++
T Consensus 345 -~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 345 -DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp -CSSEEEEEETTSCEEEEEHHHH
T ss_pred -cCCEEEEEeCCCcEEEEECCCC
Confidence 6889999999999999998654
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-28 Score=283.61 Aligned_cols=299 Identities=10% Similarity=0.010 Sum_probs=232.7
Q ss_pred CCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCc---eeecccceeeecccc----------------------------
Q 001184 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRE---RLVSKPFKIWDMSNC---------------------------- 396 (1130)
Q Consensus 348 ~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~---------------------------- 396 (1130)
.++.+++|+|||+ +|+++ .++.|++||+.+|+ .+. .|.....
T Consensus 5 ~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (450)
T 2vdu_B 5 HPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAG-----KWSDDFDKIQESRNTTAKEQQGQSSENENENKKLK 77 (450)
T ss_dssp CCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEE-----EEECCC-----------------------------
T ss_pred ccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeee-----ecCCccccccccccccchhhccccccccccccccc
Confidence 4789999999998 46655 47899999999998 432 2221100
Q ss_pred ------------ccceeeeeecCCCccEEEEEEcCCCCEE-EEEeCCCeEEEEEec--CCccceeeeeeecCCCCeeEEE
Q 001184 397 ------------SMMLQAAIVKDSSISVSRVAWSPDGNFI-GVAFTKHLIHLYTYQ--GSNDLCQSLEIDAHVGGVNDLA 461 (1130)
Q Consensus 397 ------------~~~~~~~~~~~h~~~V~~v~~spdg~~l-as~~~d~~i~vwd~~--~~~~~~~~~~~~~h~~~V~~i~ 461 (1130)
....+.....+|.+.|.+++|+|||++| |+|+.||.|++||+. +++.+... ....|...|.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~v~~~~ 156 (450)
T 2vdu_B 78 SNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLR-KRFCFSKRPNAIS 156 (450)
T ss_dssp ----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEE-EEEECSSCEEEEE
T ss_pred cCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeee-ecccCCCCceEEE
Confidence 0000111234677789999999999996 899999999999999 77765532 1236788999999
Q ss_pred EecCCCceEEEEEcCCCcEEEEe-cCCCeee----EecCCCcCEEEEeeccc-CCccEEEEEecCCcEEEEEccCCccee
Q 001184 462 FSYPNKQLCIVTCGDDKLIRVWD-LSGRKLF----QFEGHEAPVYSVCPHQK-ENIHFIFSTAVDGKIKAWLYDNVGSRV 535 (1130)
Q Consensus 462 ~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~----~~~~h~~~v~~~~~~~~-~~~~~l~s~s~dg~i~vwd~~~~~~~~ 535 (1130)
|+|+++ +|++|+.|+.|++|+ .++.... .+.+|...|.+++|+|+ ..+.+|++++.|+.|++||+++.....
T Consensus 157 ~sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 157 IAEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD 234 (450)
T ss_dssp ECTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred EcCCCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence 999999 899999999999999 6665443 77899999999999875 225799999999999999999888776
Q ss_pred e-ecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEeccc------------------------Cce
Q 001184 536 D-YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR------------------------KKS 590 (1130)
Q Consensus 536 ~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------------------------~~~ 590 (1130)
. +..|...|.+++|+ ++++|++++. ++.|++||+.+++.+..+..+. ...
T Consensus 235 ~~~~~h~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (450)
T 2vdu_B 235 KWLFGHKHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA 309 (450)
T ss_dssp EECCCCSSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred eeecCCCCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence 6 55788899999999 9999999986 8999999999999888886431 235
Q ss_pred eEEEEEcCCCCEEEEEe-CCCcEEEEeC--CCC---ceeEEEeccCCCCCcceEEEcCCCCEEEEEeC------CCcEEE
Q 001184 591 AGVVQFDTTRNRILAAG-EDNQIKFWDM--DNV---NMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTA------DQGIKI 658 (1130)
Q Consensus 591 v~~~~~~~~~~~l~~~~-~dg~i~vwd~--~~~---~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~------dg~i~i 658 (1130)
+..++|+|+++++++++ .|+.|++|++ ..+ +.+..+..+ ..+.+++|+|++.++++++. +..|.+
T Consensus 310 v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v 386 (450)
T 2vdu_B 310 VSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKF 386 (450)
T ss_dssp EEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEE
Confidence 78899999999999998 8999999999 555 556666655 37999999996544443332 456889
Q ss_pred EEcCCC
Q 001184 659 LANADG 664 (1130)
Q Consensus 659 w~~~~~ 664 (1130)
|.+...
T Consensus 387 ~~~~~~ 392 (450)
T 2vdu_B 387 IEYNLN 392 (450)
T ss_dssp EEEETT
T ss_pred EEEEcC
Confidence 887543
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-28 Score=276.54 Aligned_cols=295 Identities=16% Similarity=0.183 Sum_probs=234.5
Q ss_pred cCCCeeeEecCCCcCEEEEeecccC-CccEEEEEecCCcEEEEEccC-Ccce-eeecCCCccEEEEEEecCCCeEEEeee
Q 001184 485 LSGRKLFQFEGHEAPVYSVCPHQKE-NIHFIFSTAVDGKIKAWLYDN-VGSR-VDYDAPGLWCTTMLYSADGSRLFSCGT 561 (1130)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~s~dg~i~vwd~~~-~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1130)
...+.+..+.+|.+.|++++|++.. ++.+|++++.||.|++||+++ .... ..+..|...|.+++|+|++++|++++.
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence 5566778889999999999997652 258999999999999999987 3333 567778899999999999999999986
Q ss_pred cCCCCcEEEEeeCCCCceeEEEecccCceeEEEEE--cCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEE
Q 001184 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQF--DTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLR 639 (1130)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~ 639 (1130)
++.|++||+.+++.+.. .+|. ..+.+++| +++++++++++.||.|++||+.+++.+..+..+. .+.++.
T Consensus 107 ----dg~v~iwd~~~~~~~~~-~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~~~ 177 (368)
T 3mmy_A 107 ----DKTAKMWDLSSNQAIQI-AQHD-APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE---RCYCAD 177 (368)
T ss_dssp ----TSEEEEEETTTTEEEEE-EECS-SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS---CEEEEE
T ss_pred ----CCcEEEEEcCCCCceee-cccc-CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC---CceEEE
Confidence 89999999999887764 4444 48999999 8999999999999999999999999988887654 455565
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCccccc
Q 001184 640 FNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILN 719 (1130)
Q Consensus 640 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~ 719 (1130)
+. ...+++++.++.+.+|++...........
T Consensus 178 ~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------------------------------------------- 208 (368)
T 3mmy_A 178 VI--YPMAVVATAERGLIVYQLENQPSEFRRIE----------------------------------------------- 208 (368)
T ss_dssp EE--TTEEEEEEGGGCEEEEECSSSCEEEEECC-----------------------------------------------
T ss_pred ec--CCeeEEEeCCCcEEEEEeccccchhhhcc-----------------------------------------------
Confidence 55 45788899999999999865411100000
Q ss_pred CCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCC
Q 001184 720 GADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRT 799 (1130)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~ 799 (1130)
T Consensus 209 -------------------------------------------------------------------------------- 208 (368)
T 3mmy_A 209 -------------------------------------------------------------------------------- 208 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCE----EEEEe-CCeEEEEECCCc---eeEEEEe
Q 001184 800 EQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSY----VMSAG-GGKVSLFNMMNF---KVMTTFM 871 (1130)
Q Consensus 800 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~----la~~~-dg~i~iwd~~~~---~~~~~~~ 871 (1130)
..+...+.++++.++... +++++ ||.|++||+... .....+.
T Consensus 209 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~ 258 (368)
T 3mmy_A 209 ------------------------------SPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFK 258 (368)
T ss_dssp ------------------------------CSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEE
T ss_pred ------------------------------ccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeee
Confidence 001222233333333332 66666 788888888776 5566666
Q ss_pred CCCC------------CeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCC
Q 001184 872 SPPP------------ASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDA 939 (1130)
Q Consensus 872 ~~~~------------~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg 939 (1130)
.|.. .|++++|+| ++++|++|+.||.|++||+.+++++..+.+|...|++++|+|||++|++++.|+
T Consensus 259 ~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~ 337 (368)
T 3mmy_A 259 CHRSNGTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYD 337 (368)
T ss_dssp CSEEC----CCCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCC
T ss_pred eeecccccccccccccceEEEEEec-CCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccc
Confidence 6665 799999999 889999999999999999999999999999999999999999999999999998
Q ss_pred cEEEEECCC
Q 001184 940 QLIFWNTDT 948 (1130)
Q Consensus 940 ~i~vwd~~~ 948 (1130)
..+.|++-.
T Consensus 338 ~~~~~~~~~ 346 (368)
T 3mmy_A 338 WSKGHEFYN 346 (368)
T ss_dssp STTCGGGCC
T ss_pred ccccccccC
Confidence 766666544
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-28 Score=273.59 Aligned_cols=210 Identities=14% Similarity=0.194 Sum_probs=178.7
Q ss_pred eeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCC----CeeeEecCCCcCEEEEeecccCCccEEEEEecCCcE
Q 001184 449 EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG----RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKI 523 (1130)
Q Consensus 449 ~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i 523 (1130)
.+.+|.+.|++++|+|+++ +|++|+.|+.|++|| .++ +.+..+.+|...|.+++|++..++.+|++++.||.|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGR--HVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp EECCCSSCEEEEEECSSSS--EEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cCcccccceeEEEEcCCCC--EEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 4679999999999999999 899999999999999 544 366778899999999999875456899999999999
Q ss_pred EEEEccCC---------cceeeecCCCccEEEEEEecC--CCeEEEeeecCCCCcEEEEeeCCCCceeEEEec-------
Q 001184 524 KAWLYDNV---------GSRVDYDAPGLWCTTMLYSAD--GSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG------- 585 (1130)
Q Consensus 524 ~vwd~~~~---------~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~------- 585 (1130)
++||++.. .....+..+...|.+++|+|+ ++++++++. ++.|++||+++++.+..+..
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~ 159 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN----DGILRLYDALEPSDLRSWTLTSEMKVL 159 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET----TCEEEEEECSSTTCTTCCEEEEEEESC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecC----CCcEEEecCCChHHhcccccccccccc
Confidence 99999876 345677788899999999999 999999986 89999999988876544331
Q ss_pred -----ccCceeEEEEEcCC---CCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCC----CEEEEEeCC
Q 001184 586 -----FRKKSAGVVQFDTT---RNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEG----NLLVVTTAD 653 (1130)
Q Consensus 586 -----~~~~~v~~~~~~~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~----~~l~~~~~d 653 (1130)
.+...+.+++|+|+ +.++++++.++.+.+|+...++.........+...|.+++|+|++ ++|++++.|
T Consensus 160 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~d 239 (351)
T 3f3f_A 160 SIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKD 239 (351)
T ss_dssp SCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETT
T ss_pred ccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCC
Confidence 23347889999997 899999999999999988888764444444556689999999998 899999999
Q ss_pred CcEEEEEcCCC
Q 001184 654 QGIKILANADG 664 (1130)
Q Consensus 654 g~i~iw~~~~~ 664 (1130)
|.|++||+..+
T Consensus 240 g~i~iwd~~~~ 250 (351)
T 3f3f_A 240 GRIRIFKITEK 250 (351)
T ss_dssp SCEEEEEEEEC
T ss_pred CeEEEEeCCCC
Confidence 99999998765
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-28 Score=280.66 Aligned_cols=246 Identities=15% Similarity=0.185 Sum_probs=206.3
Q ss_pred cEEEEEEcCCCCEE-EEEeCCCeEEEEEecCCcc-ceeeeeeecCCCCeeEEEEec-CCCceEEEEEcCCCcEEEEe-cC
Q 001184 411 SVSRVAWSPDGNFI-GVAFTKHLIHLYTYQGSND-LCQSLEIDAHVGGVNDLAFSY-PNKQLCIVTCGDDKLIRVWD-LS 486 (1130)
Q Consensus 411 ~V~~v~~spdg~~l-as~~~d~~i~vwd~~~~~~-~~~~~~~~~h~~~V~~i~~s~-d~~~l~l~s~s~d~~v~iwd-~~ 486 (1130)
....++++|+...+ ++++.||.|+||++..... ......+.+|.+.|++++|+| +++ +|++|+.|++|++|| .+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECCT
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEccC
Confidence 34568899987654 4578899999999965422 223345789999999999999 787 899999999999999 56
Q ss_pred C-------CeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeee--cCCCccEEEEEEecCCCeEE
Q 001184 487 G-------RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY--DAPGLWCTTMLYSADGSRLF 557 (1130)
Q Consensus 487 ~-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~ 557 (1130)
+ +.+..+.+|...|.+++|++.. ..+|++++.||.|++||+++.+....+ ..|...|.+++|+|++++|+
T Consensus 114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 192 (402)
T 2aq5_A 114 GGLVLPLREPVITLEGHTKRVGIVAWHPTA-QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALIC 192 (402)
T ss_dssp TCCSSCBCSCSEEEECCSSCEEEEEECSSB-TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred CCCccccCCceEEecCCCCeEEEEEECcCC-CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEE
Confidence 5 5688899999999999997643 259999999999999999999888888 78889999999999999999
Q ss_pred EeeecCCCCcEEEEeeCCCCceeEEE-ecccCceeEEEEEcCCCCEEEEE---eCCCcEEEEeCCCCce-eEEEeccCCC
Q 001184 558 SCGTSKEGDSHLVEWNESEGALKRTY-IGFRKKSAGVVQFDTTRNRILAA---GEDNQIKFWDMDNVNM-LTSTEAEGGL 632 (1130)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~vwd~~~~~~-~~~~~~~~~~ 632 (1130)
+++. ++.|++||+++++.+..+ .+|....+..+.|+|++.++++| +.|+.|++||+.+++. +..... .+.
T Consensus 193 ~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~ 267 (402)
T 2aq5_A 193 TSCR----DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DTS 267 (402)
T ss_dssp EEET----TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CCC
T ss_pred EEec----CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cCC
Confidence 9986 899999999999999988 67766558899999999999998 7999999999998765 333332 233
Q ss_pred CCcceEEEcCCCCEEEEE-eCCCcEEEEEcCCC
Q 001184 633 PSLPRLRFNKEGNLLVVT-TADQGIKILANADG 664 (1130)
Q Consensus 633 ~~i~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~ 664 (1130)
..+.+++|+|++++|+++ +.||.|++|++.++
T Consensus 268 ~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~ 300 (402)
T 2aq5_A 268 SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSE 300 (402)
T ss_dssp SSCEEEEEETTTTEEEEEETTCSCEEEEEECSS
T ss_pred CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCC
Confidence 478999999999999755 47999999999776
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.1e-28 Score=270.27 Aligned_cols=277 Identities=14% Similarity=0.165 Sum_probs=214.0
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
.|...|++++|||||+ +||+|+.++ ++|||+++++.... .+...+..++++++++.+
T Consensus 17 ~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~ 73 (355)
T 3vu4_A 17 HVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMS---------------------QEMRHLSKVRMLHRTNYV 73 (355)
T ss_dssp --CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEE---------------------EECSCCCEEEECTTSSEE
T ss_pred cCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeee---------------------eecCCeEEEEEcCCCCEE
Confidence 4899999999999998 588888664 78999987765431 111247889999999888
Q ss_pred E-EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCC-CeeeEecCCCcCEE
Q 001184 425 G-VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG-RKLFQFEGHEAPVY 501 (1130)
Q Consensus 425 a-s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~-~~~~~~~~h~~~v~ 501 (1130)
+ +++.|++|++||+.+++.+. .+. |...|.+++|+++. ++.+ .|+.|++|| .++ +.+..+.. +..
T Consensus 74 ~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~ 141 (355)
T 3vu4_A 74 AFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVS-YGDVISVFKFGNPWKRITDDIR---FGG 141 (355)
T ss_dssp EEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEE-ETTEEEEEESSTTCCBSSCCEE---EEE
T ss_pred EEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEE-EcCEEEEEECCCCceeeEEecc---CCc
Confidence 4 56778999999999987665 344 66789999999764 2333 378999999 665 66666654 333
Q ss_pred EEeecccCCccEEEE--EecCCcEEEEEccCCc----------------ceeeecCCCccEEEEEEecCCCeEEEeeecC
Q 001184 502 SVCPHQKENIHFIFS--TAVDGKIKAWLYDNVG----------------SRVDYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s--~s~dg~i~vwd~~~~~----------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1130)
.+++++ .+++. |+.||.|++||+.+.. ....+..|...|.+++|+|+|++|++++.
T Consensus 142 ~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~-- 215 (355)
T 3vu4_A 142 VCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ-- 215 (355)
T ss_dssp EEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET--
T ss_pred eEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC--
Confidence 444544 35555 5889999999998765 15678889999999999999999999986
Q ss_pred CCCcE-EEEeeCCCCceeEEEe-cccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeE--EE-------------
Q 001184 564 EGDSH-LVEWNESEGALKRTYI-GFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLT--ST------------- 626 (1130)
Q Consensus 564 ~~~~~-i~~wd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~------------- 626 (1130)
|++ |++||+++++.+..+. +.+...+.+++|+|++++|++++.|+.|++||+..+.... .+
T Consensus 216 --d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (355)
T 3vu4_A 216 --DGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEW 293 (355)
T ss_dssp --TCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSS
T ss_pred --CCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeecccccccc
Confidence 897 9999999999999998 5244589999999999999999999999999997653211 10
Q ss_pred -----ecc-CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 627 -----EAE-GGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 627 -----~~~-~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
... ........++|+++++.+++++.||.+++|++..+
T Consensus 294 ~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 294 SLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp CSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred ceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 011 11123477999999999999999999999998765
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-27 Score=265.40 Aligned_cols=239 Identities=10% Similarity=0.179 Sum_probs=187.3
Q ss_pred ecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001184 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1130)
Q Consensus 405 ~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd 484 (1130)
..+|...|.+++|+|||++||+|+.++ +++||+.+++... . .+...+..+++.++++. ++++++.|++|++||
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~---~--~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM---S--QEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWD 87 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE---E--EECSCCCEEEECTTSSE-EEEECSSTTEEEEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee---e--eecCCeEEEEEcCCCCE-EEEEECCccEEEEEE
Confidence 568999999999999999999998775 7899998765432 1 22235888999998884 446788899999999
Q ss_pred -cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCC-cceeeecCCCccEEEEEEecCCCeEEEeeec
Q 001184 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV-GSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
.+++++..+. |...|.++++++. .++.+ .|+.|++||+.+. +....+.. +...+++++ .++++++.
T Consensus 88 ~~~~~~~~~~~-~~~~v~~v~~~~~----~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg- 155 (355)
T 3vu4_A 88 DVKKQDVSRIK-VDAPVKDLFLSRE----FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNE- 155 (355)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEECSS----EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEES-
T ss_pred CCCCcEEEEEE-CCCceEEEEEcCC----EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCC-
Confidence 8888888887 6779999998642 34443 5889999999887 44444433 445566777 66766511
Q ss_pred CCCCcEEEEeeCCCCc----------------eeEEEecccCceeEEEEEcCCCCEEEEEeCCCc-EEEEeCCCCceeEE
Q 001184 563 KEGDSHLVEWNESEGA----------------LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQ-IKFWDMDNVNMLTS 625 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~----------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~ 625 (1130)
..++.|++||+.++. .+..+.+|.. .|.+++|+|++++|++|+.|++ |++||+.+++.+..
T Consensus 156 -~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~-~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~ 233 (355)
T 3vu4_A 156 -FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN-PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVRE 233 (355)
T ss_dssp -SCTTCEEEEECCC------------------CCEEECCCSS-CEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEE
T ss_pred -CcCcEEEEEECCCCCccccccccccccccCcccEEEEccCC-ceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 238999999998865 2677888766 8999999999999999999998 99999999999998
Q ss_pred EeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 626 TEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 626 ~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+....+...|.+++|+|++++|++++.|++|++||+..+
T Consensus 234 ~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 234 FRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp EECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred EEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 873223448999999999999999999999999999765
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=9.5e-27 Score=246.13 Aligned_cols=219 Identities=17% Similarity=0.141 Sum_probs=165.6
Q ss_pred CccceEEEEEecc----CCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEE
Q 001184 766 SASKVARLLYTNS----GIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVAL 841 (1130)
Q Consensus 766 ~~~~i~~l~~s~~----g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~ 841 (1130)
+...|.+++++|+ +..++.++.+ +.+|. +
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~-------------------------------------------l-- 142 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLG-------------------------------------------L-- 142 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEE--EEEEE-------------------------------------------E--
T ss_pred cccceEEEEECCCccccccEEEeCCCe--EEEEe-------------------------------------------c--
Confidence 4456788899999 8888887644 44553 1
Q ss_pred ecCCCEEEEEe---CCeEEEEEC-CCceeEEEEeCCCCCeEEEEEeC--CCCcEEEEEeCCCcEEEEEeecCeEEEEEec
Q 001184 842 SKNDSYVMSAG---GGKVSLFNM-MNFKVMTTFMSPPPASTFLAFHP--QDNNIIAIGMEDSTIQIYNVRVDEVKTKLKG 915 (1130)
Q Consensus 842 s~dg~~la~~~---dg~i~iwd~-~~~~~~~~~~~~~~~i~~l~~sp--~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 915 (1130)
++|+++.++. |+.|++|++ .+++.+..+.+|...++.++|++ +++.+||+|+.|++|+|||+++++++.++.+
T Consensus 143 -~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g 221 (356)
T 2w18_A 143 -TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHI 221 (356)
T ss_dssp -TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred -CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcC
Confidence 4566666654 788999998 55888888888999888888887 4679999999999999999999999999987
Q ss_pred CC---CCeeEEEEccCCCeE------------EEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEE
Q 001184 916 HQ---KHITGLAFSTNLNIL------------VSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRL 980 (1130)
Q Consensus 916 h~---~~V~~l~~s~dg~~L------------~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 980 (1130)
|. ..+.+++|+|||.++ ++++.|++|++||..+++.........+.++. ..+.+. +.++.++
T Consensus 222 ~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~-~~~lsg--~~sg~~l 298 (356)
T 2w18_A 222 DDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQA-GRFLEG--DVKDHCA 298 (356)
T ss_dssp CC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCC-CCEEEE--EEETTEE
T ss_pred CCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCc-ceeEcc--ccCCCEE
Confidence 54 367788999999876 56788999999999997765433333333432 223333 3337777
Q ss_pred EE-EcCCcEEEEECCCceeeeeeecCCCCCCC-eEEEEECCCCCEEEEEeCCCcEEEEeC
Q 001184 981 LV-NHETQLAIYDGSKMECIRQWVPQDVLSSP-ISSAAYSCNSQLIYATFTDGSIGVFDA 1038 (1130)
Q Consensus 981 ~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~-v~~v~~s~dg~~l~t~~~Dg~i~vwd~ 1038 (1130)
++ +.|++|+|||+.+++++..+.+| ... +.+++|||||++|++|+.|++|+|||+
T Consensus 299 ASgS~DgTIkIWDl~tGk~l~tL~gH---~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 299 AAILTSGTIAIWDLLLGQCTALLPPV---SDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEETTSCEEEEETTTCSEEEEECCC-----CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEcCCCcEEEEECCCCcEEEEecCC---CCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 87 46999999999999999998766 444 456899999999999999999999995
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=302.97 Aligned_cols=251 Identities=14% Similarity=0.207 Sum_probs=210.3
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC--CC
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD--GN 422 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd--g~ 422 (1130)
+|.+.|++++|+|+|+ +|++|+.||.|+|||+.++.... ...+.+|.+.|.+++|+|+ ++
T Consensus 7 gH~~~V~~l~~s~dg~-~latg~~dg~I~vwd~~~~~~~~-----------------~~~l~~h~~~V~~l~~s~~~~~~ 68 (753)
T 3jro_A 7 AHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKL-----------------IDTLTGHEGPVWRVDWAHPKFGT 68 (753)
T ss_dssp -CCCCEEEECCCSSSC-CEEEEETTTEEEEEEEETTEEEE-----------------EEEECCCSSCEEEEEECCTTSCS
T ss_pred cCcceeEEEEECCCCC-eEEEEECCCcEEEEecCCCCCcc-----------------ceeccCCcCceEEEEecCCCCCC
Confidence 5999999999999998 48999999999999998443221 1147799999999999998 99
Q ss_pred EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecC--CCceEEEEEcCCCcEEEEe-cCC--CeeeEecCCC
Q 001184 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIRVWD-LSG--RKLFQFEGHE 497 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d--~~~l~l~s~s~d~~v~iwd-~~~--~~~~~~~~h~ 497 (1130)
+|++|+.||.|++||+.+++. .....+.+|...|++++|+|+ ++ .+++|+.||.|++|| .++ .....+.+|.
T Consensus 69 ~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~ 145 (753)
T 3jro_A 69 ILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIIDAHA 145 (753)
T ss_dssp EEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEEEECCS
T ss_pred EEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeEeecCC
Confidence 999999999999999998752 233467889999999999999 88 899999999999999 444 3456677899
Q ss_pred cCEEEEeecccC-----------CccEEEEEecCCcEEEEEccCCc----ceeeecCCCccEEEEEEecC---CCeEEEe
Q 001184 498 APVYSVCPHQKE-----------NIHFIFSTAVDGKIKAWLYDNVG----SRVDYDAPGLWCTTMLYSAD---GSRLFSC 559 (1130)
Q Consensus 498 ~~v~~~~~~~~~-----------~~~~l~s~s~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~s~~---~~~l~~~ 559 (1130)
..|.+++|+|.. ++.++++|+.||.|++||++... ....+..|...|.+++|+|+ +++++++
T Consensus 146 ~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~ 225 (753)
T 3jro_A 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 225 (753)
T ss_dssp SCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred CceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEE
Confidence 999999998742 56899999999999999998874 33466788899999999999 8999999
Q ss_pred eecCCCCcEEEEeeCCCCce-----eEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 001184 560 GTSKEGDSHLVEWNESEGAL-----KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN 621 (1130)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 621 (1130)
+. ++.|++||+.++.. ......+ ...+.+++|+|+++++++++.||.|++|++..+.
T Consensus 226 s~----Dg~I~iwd~~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 226 SQ----DRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp ES----SSCEEEEEESSSSSCCBCCBSSSSCC-SSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ec----CCEEEEecCCCCCCcceeEEeccCCC-CCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 86 89999999988642 2222223 3478899999999999999999999999998643
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=277.59 Aligned_cols=265 Identities=15% Similarity=0.240 Sum_probs=213.3
Q ss_pred eeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC
Q 001184 340 VACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1130)
Q Consensus 340 ~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 419 (1130)
....+.|.+.|++++|+|++..+||+|+.||.|+|||+.+...... ..........+.+|...|.+++|+|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---------~~~~~~~~~~~~~h~~~v~~l~~~~ 191 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---------PSGECQPDLRLRGHQKEGYGLSWNP 191 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---------TTCCCCCSEEEECCSSCCCCEEECT
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC---------ccccCCCcEEecCCCCCeEEEEeCC
Confidence 4556679999999999998545899999999999999976311100 0000011124779999999999999
Q ss_pred CCC-EEEEEeCCCeEEEEEecCCccc----eeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCC---Cee
Q 001184 420 DGN-FIGVAFTKHLIHLYTYQGSNDL----CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG---RKL 490 (1130)
Q Consensus 420 dg~-~las~~~d~~i~vwd~~~~~~~----~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~---~~~ 490 (1130)
++. +|++|+.||.|++||+.++... .....+.+|...|.+++|+|++.. ++++++.|+.|++|| .++ +.+
T Consensus 192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~ 270 (430)
T 2xyi_A 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPS 270 (430)
T ss_dssp TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCS
T ss_pred CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcce
Confidence 998 9999999999999999874321 223456789999999999995444 899999999999999 544 577
Q ss_pred eEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccC-CcceeeecCCCccEEEEEEecCCC-eEEEeeecCCCCcE
Q 001184 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN-VGSRVDYDAPGLWCTTMLYSADGS-RLFSCGTSKEGDSH 568 (1130)
Q Consensus 491 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~ 568 (1130)
..+..|...|++++|++... .++++|+.||.|++||++. ......+..|...|.+++|+|+++ +|++++. ++.
T Consensus 271 ~~~~~~~~~v~~i~~~p~~~-~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~----d~~ 345 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT----DRR 345 (430)
T ss_dssp EEEECCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEET----TSC
T ss_pred eEeecCCCCeEEEEeCCCCC-CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeC----CCc
Confidence 88889999999999987432 4799999999999999998 455667888899999999999996 4677764 899
Q ss_pred EEEeeCCC--------------CceeEEEecccCceeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCC
Q 001184 569 LVEWNESE--------------GALKRTYIGFRKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDNV 620 (1130)
Q Consensus 569 i~~wd~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~ 620 (1130)
|++||+.. .+.+..+.+|.. .+..++|+|+++ ++++++.||.|++|++...
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-KISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-CEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEEeCCCCccccCccccccCCcceEEEcCCCCC-CceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 99999976 355666666554 799999999999 8999999999999998753
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-27 Score=272.16 Aligned_cols=304 Identities=10% Similarity=0.073 Sum_probs=243.1
Q ss_pred CcccccCC--cccceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeee
Q 001184 328 QATWSLDD--LPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIV 405 (1130)
Q Consensus 328 ~~~~~~~~--~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1130)
..+|..+. ........+.+...+.+++|+|+++ ++++++.++.|++||+.+++....... ..+
T Consensus 101 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~i~~~d~~~g~~~~~~~~--------------~~~ 165 (433)
T 3bws_A 101 EKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTR-LAIPLLEDEGMDVLDINSGQTVRLSPP--------------EKY 165 (433)
T ss_dssp TCEEECCBTTCSEEEEEEEECSSCBCCCEESSSSE-EEEEBTTSSSEEEEETTTCCEEEECCC--------------HHH
T ss_pred eEEEEECCCCCcceEEEEEcCCCCceEEEEeCCCe-EEEEeCCCCeEEEEECCCCeEeeecCc--------------ccc
Confidence 34444444 3335555666667788999999654 788888899999999999887642111 125
Q ss_pred cCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-
Q 001184 406 KDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD- 484 (1130)
Q Consensus 406 ~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd- 484 (1130)
.+|.+.|.+++|+|+++++++++.|+.|++||+.+++.+. .+..|...+.+++|+|+++. ++++++.|+.|++||
T Consensus 166 ~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~d~ 241 (433)
T 3bws_A 166 KKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA---TVDLTGKWSKILLYDPIRDL-VYCSNWISEDISVIDR 241 (433)
T ss_dssp HTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE---EEECSSSSEEEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred cccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE---EEcCCCCCeeEEEEcCCCCE-EEEEecCCCcEEEEEC
Confidence 6899999999999999999999999999999999877554 56689999999999999994 346777899999999
Q ss_pred cCCCeeeEecCCCcCEEEEeecccCCccEEEEEe--------cCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeE
Q 001184 485 LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA--------VDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRL 556 (1130)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s--------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1130)
.+++.+..+..+ ..+.+++|++ ++..+++++ .|+.|++||+++++....+ .+...+.+++|+|+++.+
T Consensus 242 ~~~~~~~~~~~~-~~~~~~~~~~--~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l 317 (433)
T 3bws_A 242 KTKLEIRKTDKI-GLPRGLLLSK--DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKI 317 (433)
T ss_dssp TTTEEEEECCCC-SEEEEEEECT--TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEE
T ss_pred CCCcEEEEecCC-CCceEEEEcC--CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEE
Confidence 777777777654 4588998865 557888887 4889999999887655544 234468899999999877
Q ss_pred EEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeC---------------CCcEEEEeCCCCc
Q 001184 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGE---------------DNQIKFWDMDNVN 621 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------dg~i~vwd~~~~~ 621 (1130)
++++. .++.|++||..+++.+..+.. ...+..++|+|+++++++++. ||.|++||+.+++
T Consensus 318 ~~~~~---~~~~v~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 318 YVSDM---CCSKIEVYDLKEKKVQKSIPV--FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp EEEET---TTTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred EEEec---CCCEEEEEECCCCcEEEEecC--CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 66542 388999999999988887763 336889999999999988876 5799999999999
Q ss_pred eeEEEeccCCCCCcceEEEcCCCCEEEEEeC-CCcEEEEEcC
Q 001184 622 MLTSTEAEGGLPSLPRLRFNKEGNLLVVTTA-DQGIKILANA 662 (1130)
Q Consensus 622 ~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~-dg~i~iw~~~ 662 (1130)
.+..+.... .+.+++|+|++++|++++. |+.|++|+++
T Consensus 393 ~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 393 VKEFWEAGN---QPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEEECSS---SEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEEEecCCC---CCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 888887633 6899999999999998875 9999999975
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-26 Score=264.04 Aligned_cols=238 Identities=13% Similarity=0.158 Sum_probs=197.0
Q ss_pred CCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEE-EEEeCCCcEEEEEeecCe
Q 001184 831 NAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNII-AIGMEDSTIQIYNVRVDE 908 (1130)
Q Consensus 831 ~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~l-asg~~dg~v~iwd~~~~~ 908 (1130)
+|...+.+++|+++++++++++ ++.|++||+.+++.+..+..|...+.+++|+| ++..+ ++++.|+.|++||+.+++
T Consensus 167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~ 245 (433)
T 3bws_A 167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDP-IRDLVYCSNWISEDISVIDRKTKL 245 (433)
T ss_dssp TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEET-TTTEEEEEETTTTEEEEEETTTTE
T ss_pred ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcC-CCCEEEEEecCCCcEEEEECCCCc
Confidence 4677889999999999999988 79999999999999999998999999999999 66655 566689999999999999
Q ss_pred EEEEEecCCCCeeEEEEccCCCeEEEEe--------CCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEE
Q 001184 909 VKTKLKGHQKHITGLAFSTNLNILVSSG--------SDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRL 980 (1130)
Q Consensus 909 ~~~~l~~h~~~V~~l~~s~dg~~L~s~s--------~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 980 (1130)
.+..+..+ ..+.+++|+|+|++|++++ .|+.|++||+.+++...... +...+..++|+|++..+
T Consensus 246 ~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-------~~~~~~~~~~~~~g~~l 317 (433)
T 3bws_A 246 EIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-------PPGNKRHIVSGNTENKI 317 (433)
T ss_dssp EEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-------EEECEEEEEECSSTTEE
T ss_pred EEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-------CCCCcceEEECCCCCEE
Confidence 98888765 4599999999999999988 58899999999865433221 11467899999999866
Q ss_pred EE--EcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeC---------------CCcEEEEeCCCccc
Q 001184 981 LV--NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFT---------------DGSIGVFDADSLRL 1043 (1130)
Q Consensus 981 ~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~---------------Dg~i~vwd~~~~~~ 1043 (1130)
++ +.++.+++||+.+++.+..+.. ...+.+++|+|||++|++++. ||.|++||+.+++.
T Consensus 318 ~~~~~~~~~v~v~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~ 393 (433)
T 3bws_A 318 YVSDMCCSKIEVYDLKEKKVQKSIPV----FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV 393 (433)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEEC----SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE
T ss_pred EEEecCCCEEEEEECCCCcEEEEecC----CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE
Confidence 54 4689999999999998877753 468999999999999998886 57999999999988
Q ss_pred ccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEe-CCCcEEEEeCCC
Q 001184 1044 RCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGL-TDGSVKVIEPSE 1094 (1130)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~Dg~v~vW~~~~ 1094 (1130)
+..+... ..+..++|+|+ +.+|++++ .|+.|++|++..
T Consensus 394 ~~~~~~~------------~~~~~~~~s~d-g~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 394 KEFWEAG------------NQPTGLDVSPD-NRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEECS------------SSEEEEEECTT-SCEEEEEETTTTEEEEEEETT
T ss_pred EEEecCC------------CCCceEEEcCC-CCEEEEEECCCCeEEEEEecC
Confidence 7766521 23567899995 67777766 499999999863
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-26 Score=262.54 Aligned_cols=274 Identities=10% Similarity=0.068 Sum_probs=221.2
Q ss_pred eEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE-EEEeCCCeEEEEEec
Q 001184 361 TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI-GVAFTKHLIHLYTYQ 439 (1130)
Q Consensus 361 ~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l-as~~~d~~i~vwd~~ 439 (1130)
+++++++.|+.|++||+.+++.+. .+..|. .+.+++|+|||++| ++++.|+.|++||+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~-------------------~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~ 62 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTA-------------------TIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEE-------------------EEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEcCCCCEEEEEECCCCeEEE-------------------EeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence 578999999999999999988765 244554 58999999999987 667789999999999
Q ss_pred CCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEE-EEE
Q 001184 440 GSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFI-FST 517 (1130)
Q Consensus 440 ~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~ 517 (1130)
+++.+. .+..+. .+.+++|+|+++. ++++++.|+.|++|| .+++.+..+.. ...+.+++|++ +++.+ +++
T Consensus 63 ~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~--dg~~l~~~~ 134 (391)
T 1l0q_A 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSP--DGKKLYVTN 134 (391)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECT--TSSEEEEEE
T ss_pred CCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECC--CCCEEEEEe
Confidence 987554 344444 8999999999994 446677889999999 77777777764 45688999865 44555 788
Q ss_pred ecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEc
Q 001184 518 AVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFD 597 (1130)
Q Consensus 518 s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~ 597 (1130)
+.|+.|++||+.+.+....+..+ ..+.+++|+|+++++++++. .++.|++||+.+++....+..+ ..+.+++|+
T Consensus 135 ~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~ 208 (391)
T 1l0q_A 135 NGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVE--AAPSGIAVN 208 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECS--SEEEEEEEC
T ss_pred CCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecC--CCccceEEC
Confidence 88999999999988777766654 45699999999998865432 3789999999999888777642 368889999
Q ss_pred CCCCEEEEEe---CCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEE-EEEeCCCcEEEEEcCCCchhhhhhc
Q 001184 598 TTRNRILAAG---EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLL-VVTTADQGIKILANADGLRALRAIE 672 (1130)
Q Consensus 598 ~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~ 672 (1130)
|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++.|+.|++||+.++ +....+.
T Consensus 209 ~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~-~~~~~~~ 283 (391)
T 1l0q_A 209 PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN-TITATMA 283 (391)
T ss_dssp TTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE
T ss_pred CCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCC-cEEEEEE
Confidence 9999999988 68999999999999888887654 47899999999987 56678999999999887 4444443
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-26 Score=242.54 Aligned_cols=292 Identities=15% Similarity=0.164 Sum_probs=203.8
Q ss_pred eeEEEEe-cCCCceEEEEEcCCCcEEEEe-cCC---CeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCC
Q 001184 457 VNDLAFS-YPNKQLCIVTCGDDKLIRVWD-LSG---RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV 531 (1130)
Q Consensus 457 V~~i~~s-~d~~~l~l~s~s~d~~v~iwd-~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~ 531 (1130)
+.++-|- +..+.+.+++++ +..|++|+ .++ ++++++.+|+.+|..+.+.|+..+-..++-+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------- 107 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------------- 107 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC-------------
T ss_pred EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec-------------
Confidence 4555553 344555667776 56899999 888 8899999999999999998755432222211
Q ss_pred cceeeecCCCccEEEEEEecC----CCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEe
Q 001184 532 GSRVDYDAPGLWCTTMLYSAD----GSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG 607 (1130)
Q Consensus 532 ~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 607 (1130)
..+...|.+++++|| ++.+++++. .+.+|++ ++++.+.+++
T Consensus 108 ------~~~~~~v~sla~spd~~~~~~~l~s~g~------~~~v~~l-----------------------~~g~lv~ss~ 152 (356)
T 2w18_A 108 ------NLEIREIRALFCSSDDESEKQVLLKSGN------IKAVLGL-----------------------TKRRLVSSSG 152 (356)
T ss_dssp ------SSSEEEEEEECC------CCEEEEEEEE------EEEEEEE-----------------------TTTEEEEEES
T ss_pred ------cccccceEEEEECCCccccccEEEeCCC------eEEEEec-----------------------CCCcEEEecc
Confidence 224456899999999 889988753 3556643 2333444432
Q ss_pred --CCCcEEEEeC-CCCceeEEEeccCCCCCcceEEEcC---CCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccc
Q 001184 608 --EDNQIKFWDM-DNVNMLTSTEAEGGLPSLPRLRFNK---EGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRA 681 (1130)
Q Consensus 608 --~dg~i~vwd~-~~~~~~~~~~~~~~~~~i~~v~~s~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 681 (1130)
.|+.|++|++ .+++.+..+..+.. .+..++|++ ++.+|++++.|++|+|||+.++ +.++.+.++.
T Consensus 153 ~g~d~~V~~~~~s~dG~~~~s~~~~~~--~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~------ 223 (356)
T 2w18_A 153 TLSDQQVEVMTFAEDGGGKENQFLMPP--EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHIDD------ 223 (356)
T ss_dssp SSTTCEEEEEEECTTSCEEEEEEECCC--SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEEEECCC------
T ss_pred cCCCCcEEEEEECCCCceeeeeccCCC--ceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEEEcCCC------
Confidence 4888888888 44777777776665 678889988 7899999999999999999887 3333322110
Q ss_pred cccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEec
Q 001184 682 STEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMP 761 (1130)
Q Consensus 682 ~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~ 761 (1130)
T Consensus 224 -------------------------------------------------------------------------------- 223 (356)
T 2w18_A 224 -------------------------------------------------------------------------------- 223 (356)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEE
Q 001184 762 ESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVAL 841 (1130)
Q Consensus 762 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~ 841 (1130)
.+...+.+++|+|+|..+++++.+..
T Consensus 224 ---~~v~~v~~vafSpdG~~lvs~s~~~~--------------------------------------------------- 249 (356)
T 2w18_A 224 ---SYQASVCHKAYSEMGLLFIVLSHPCA--------------------------------------------------- 249 (356)
T ss_dssp ------CCCEEEEEEETTEEEEEEC-------------------------------------------------------
T ss_pred ---cceeeeEEEEECCCCCEEEEeccCCC---------------------------------------------------
Confidence 02345677889999887777654211
Q ss_pred ecCCCEEEEEe-CCeEEEEECCCceeEEEE-----eCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEec
Q 001184 842 SKNDSYVMSAG-GGKVSLFNMMNFKVMTTF-----MSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKG 915 (1130)
Q Consensus 842 s~dg~~la~~~-dg~i~iwd~~~~~~~~~~-----~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 915 (1130)
...+++|+ |++|++||..+++.+..+ .+|...+.+..+ ++.++|+|+.|++|+|||+.+++++.++.+
T Consensus 250 ---~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~g 323 (356)
T 2w18_A 250 ---KESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPP 323 (356)
T ss_dssp -----------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECC
T ss_pred ---cceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecC
Confidence 01356676 899999999999988776 355555444333 467899999999999999999999999999
Q ss_pred CCCCee-EEEEccCCCeEEEEeCCCcEEEEEC
Q 001184 916 HQKHIT-GLAFSTNLNILVSSGSDAQLIFWNT 946 (1130)
Q Consensus 916 h~~~V~-~l~~s~dg~~L~s~s~Dg~i~vwd~ 946 (1130)
|...+. .++|||||++|++|+.|++|+|||+
T Consensus 324 H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 324 VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp C--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 988765 5899999999999999999999985
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-27 Score=264.56 Aligned_cols=279 Identities=10% Similarity=0.070 Sum_probs=216.3
Q ss_pred EEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecC
Q 001184 461 AFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA 539 (1130)
Q Consensus 461 ~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 539 (1130)
.+.+++. ++++|+.||+|++|| .+++.+..+. ...|.++.++|. +++++.|++|++|+.+.
T Consensus 43 ~~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~--------- 104 (343)
T 3lrv_A 43 SMYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPGN--------- 104 (343)
T ss_dssp SSSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETTT---------
T ss_pred hhcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEccC---------
Confidence 3445666 899999999999999 8888888876 567777877664 99999999999998642
Q ss_pred CCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcC--CCCEEEEEeCCCcEEEEeC
Q 001184 540 PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT--TRNRILAAGEDNQIKFWDM 617 (1130)
Q Consensus 540 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~ 617 (1130)
.+.+|+..+++.++.+...+...+.+++|+| +++++++++.||.|++||+
T Consensus 105 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~ 156 (343)
T 3lrv_A 105 ----------------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSY 156 (343)
T ss_dssp ----------------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEES
T ss_pred ----------------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEEC
Confidence 4677888888877777644445899999999 9999999999999999999
Q ss_pred CCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccc
Q 001184 618 DNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTIT 697 (1130)
Q Consensus 618 ~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 697 (1130)
.+++.+.....+. ...+.+++|+|++.+|++|+.||.|++||+.++......
T Consensus 157 ~~~~~~~~~~~~~-~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~--------------------------- 208 (343)
T 3lrv_A 157 EDDSQYIVHSAKS-DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSR--------------------------- 208 (343)
T ss_dssp SSSCEEEEECCCS-SCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEE---------------------------
T ss_pred CCCcEEEEEecCC-CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccE---------------------------
Confidence 9999866654432 236999999999999999999999999998765100000
Q ss_pred cccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEec
Q 001184 698 PVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTN 777 (1130)
Q Consensus 698 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 777 (1130)
T Consensus 209 -------------------------------------------------------------------------------- 208 (343)
T 3lrv_A 209 -------------------------------------------------------------------------------- 208 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEE
Q 001184 778 SGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVS 857 (1130)
Q Consensus 778 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~ 857 (1130)
+..+|...|.+++|+|+|.+|++++++.|+
T Consensus 209 --------------------------------------------------~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~ 238 (343)
T 3lrv_A 209 --------------------------------------------------FPVDEEAKIKEVKFADNGYWMVVECDQTVV 238 (343)
T ss_dssp --------------------------------------------------CCCCTTSCEEEEEECTTSSEEEEEESSBEE
T ss_pred --------------------------------------------------EeccCCCCEEEEEEeCCCCEEEEEeCCeEE
Confidence 001267788999999999999999877999
Q ss_pred EEECCCceeEEEEeC---CCCCe--EEEEEeCCCCcEEEEEeC-CCcEEEEEeecCeEEEEEecCCCCeeEEEEcc---C
Q 001184 858 LFNMMNFKVMTTFMS---PPPAS--TFLAFHPQDNNIIAIGME-DSTIQIYNVRVDEVKTKLKGHQKHITGLAFST---N 928 (1130)
Q Consensus 858 iwd~~~~~~~~~~~~---~~~~i--~~l~~sp~~~~~lasg~~-dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~---d 928 (1130)
+||+.+++.+..+.. |...+ .+++|+| ++++|++++. |+.|++|++.+....... .++..++|++ +
T Consensus 239 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~ 313 (343)
T 3lrv_A 239 CFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTAD 313 (343)
T ss_dssp EEETTSSTTCBSSCCCBC-----CCEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CC
T ss_pred EEEcCCCCcceeecccccccccccceEEEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccc
Confidence 999988876554442 33333 4699999 8999999988 999999999765432222 5577888988 8
Q ss_pred CCeEEEEeCCCcEEEEECCC
Q 001184 929 LNILVSSGSDAQLIFWNTDT 948 (1130)
Q Consensus 929 g~~L~s~s~Dg~i~vwd~~~ 948 (1130)
+..+++++.|+.+.++-...
T Consensus 314 ~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 314 FTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp CCEEEEEEETTEEEEEEECS
T ss_pred cceeEEEecCCceEEEEecC
Confidence 89999999999998886544
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-26 Score=268.61 Aligned_cols=252 Identities=17% Similarity=0.264 Sum_probs=210.5
Q ss_pred eecCCCccEEEEEEcCC-CCEEEEEeCCCeEEEEEecCC-------ccceeeeeeecCCCCeeEEEEecCCCceEEEEEc
Q 001184 404 IVKDSSISVSRVAWSPD-GNFIGVAFTKHLIHLYTYQGS-------NDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG 475 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spd-g~~las~~~d~~i~vwd~~~~-------~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s 475 (1130)
...+|.+.|++++|+|+ +.+||+++.||.|++||+... ........+.+|...|.+++|+|++.. +|++|+
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~ 201 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSAS 201 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEEC
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEEe
Confidence 45689999999999997 789999999999999999862 112334467899999999999999886 699999
Q ss_pred CCCcEEEEe-cCCCe-------eeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCC---cceeeecCCCccE
Q 001184 476 DDKLIRVWD-LSGRK-------LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV---GSRVDYDAPGLWC 544 (1130)
Q Consensus 476 ~d~~v~iwd-~~~~~-------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~---~~~~~~~~~~~~v 544 (1130)
.||.|++|| ..+.. ...+.+|...|.+++|++. ++.+|++++.||.|++||++.. .....+..|...|
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 999999999 44222 4567789999999999874 3479999999999999999976 4556677888899
Q ss_pred EEEEEecCCCe-EEEeeecCCCCcEEEEeeCCC-CceeEEEecccCceeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCC-
Q 001184 545 TTMLYSADGSR-LFSCGTSKEGDSHLVEWNESE-GALKRTYIGFRKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDNV- 620 (1130)
Q Consensus 545 ~~~~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~- 620 (1130)
++++|+|++.+ +++++. ++.|++||+++ +..+..+.+|.. .+.+++|+|+++ ++++++.||.|++||+...
T Consensus 281 ~~i~~~p~~~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~h~~-~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~ 355 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGSA----DKTVALWDLRNLKLKLHSFESHKD-EIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355 (430)
T ss_dssp EEEEECSSCTTEEEEEET----TSEEEEEETTCTTSCSEEEECCSS-CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred EEEEeCCCCCCEEEEEeC----CCeEEEEeCCCCCCCeEEeecCCC-CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 99999999984 667765 89999999988 567888888655 899999999985 6899999999999999872
Q ss_pred -------------ceeEEEeccCCCCCcceEEEcCCCC-EEEEEeCCCcEEEEEcCCC
Q 001184 621 -------------NMLTSTEAEGGLPSLPRLRFNKEGN-LLVVTTADQGIKILANADG 664 (1130)
Q Consensus 621 -------------~~~~~~~~~~~~~~i~~v~~s~~~~-~l~~~~~dg~i~iw~~~~~ 664 (1130)
+.+..... +...|.+++|+|+++ ++++++.||.|++|++...
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 356 EEQSTEDAEDGPPELLFIHGG--HTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCCCHHHHHHCCTTEEEECCC--CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred cccCccccccCCcceEEEcCC--CCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 44444444 344799999999999 9999999999999998654
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=8.2e-26 Score=258.85 Aligned_cols=249 Identities=13% Similarity=0.107 Sum_probs=189.0
Q ss_pred ceeEEEEecCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEE-EEEeCCCcEEEEEeecCeEEE
Q 001184 835 VVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNII-AIGMEDSTIQIYNVRVDEVKT 911 (1130)
Q Consensus 835 ~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~l-asg~~dg~v~iwd~~~~~~~~ 911 (1130)
.+.+++|+|++++|++++ ++.|++||+.+++.+..+..+ ..+.+++|+| +++.| ++++.|+.|++||+.+++.+.
T Consensus 75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~ 152 (391)
T 1l0q_A 75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVIN 152 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 678899999999886554 689999999999998888754 4689999999 66655 788889999999999999998
Q ss_pred EEecCCCCeeEEEEccCCCeE-EEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE----cCC
Q 001184 912 KLKGHQKHITGLAFSTNLNIL-VSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN----HET 986 (1130)
Q Consensus 912 ~l~~h~~~V~~l~~s~dg~~L-~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~----~d~ 986 (1130)
.+..|. .+.+++|+|++++| ++++.|+.|++||+.+++...... ....+..++|+|++.+++++ .++
T Consensus 153 ~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-------~~~~~~~~~~~~~g~~l~~~~~~~~~~ 224 (391)
T 1l0q_A 153 TVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-------VEAAPSGIAVNPEGTKAYVTNVDKYFN 224 (391)
T ss_dssp EEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-------CSSEEEEEEECTTSSEEEEEEECSSCC
T ss_pred EEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-------cCCCccceEECCCCCEEEEEecCcCCC
Confidence 888764 57999999999988 577789999999999865432221 12568899999999988874 589
Q ss_pred cEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEE-EEEeCCCcEEEEeCCCcccccccCCCccccc------CCCC
Q 001184 987 QLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLI-YATFTDGSIGVFDADSLRLRCRIAPSAYMSQ------ASPN 1059 (1130)
Q Consensus 987 ~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l-~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~------~~~~ 1059 (1130)
.|++||+.+++.+..+..+ ..+.+++|+|||++| ++++.|+.|++||+.+++.+..+..+..... ..+.
T Consensus 225 ~v~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (391)
T 1l0q_A 225 TVSMIDTGTNKITARIPVG----PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPV 300 (391)
T ss_dssp EEEEEETTTTEEEEEEECC----SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSS
T ss_pred cEEEEECCCCeEEEEEecC----CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccc
Confidence 9999999999988887765 357899999999977 5667899999999999998877654432110 0000
Q ss_pred CceeeeEEEEEcCC-------CCCEEEEEeCCCcEEEEeCCCCcc
Q 001184 1060 SQTVFPLVVTSHPQ-------EPNQLAVGLTDGSVKVIEPSETER 1097 (1130)
Q Consensus 1060 ~~~~~~~~~~~~~~-------~~~~l~s~~~Dg~v~vW~~~~~~~ 1097 (1130)
++......+...+. ++..+...+.|..+.+|++.++..
T Consensus 301 ~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 301 QPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp CCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred cccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 11111111222221 114567777799999999977653
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-27 Score=293.87 Aligned_cols=253 Identities=19% Similarity=0.281 Sum_probs=212.8
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecC--CCceEEEEEcCCCcEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIR 481 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d--~~~l~l~s~s~d~~v~ 481 (1130)
++.+|.+.|++++|+|+|++|++|+.||.|++||+.++. ......+.+|.+.|++++|+++ ++ ++++|+.||.|+
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~ 80 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 80 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-EEEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-CccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEE
Confidence 578999999999999999999999999999999998543 2334468899999999999998 77 899999999999
Q ss_pred EEe-cCCC--eeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCc--ceeeecCCCccEEEEEEec-----
Q 001184 482 VWD-LSGR--KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG--SRVDYDAPGLWCTTMLYSA----- 551 (1130)
Q Consensus 482 iwd-~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~----- 551 (1130)
+|| .+++ .+..+.+|...|.+++|+|..++.++++++.||.|++||++... ....+..+...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 999 6665 67888899999999999876446899999999999999998773 3446677888999999999
Q ss_pred --------CCCeEEEeeecCCCCcEEEEeeCCCC----ceeEEEecccCceeEEEEEcCC---CCEEEEEeCCCcEEEEe
Q 001184 552 --------DGSRLFSCGTSKEGDSHLVEWNESEG----ALKRTYIGFRKKSAGVVQFDTT---RNRILAAGEDNQIKFWD 616 (1130)
Q Consensus 552 --------~~~~l~~~~~~~~~~~~i~~wd~~~~----~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~vwd 616 (1130)
++.++++++. ++.|++||++++ .....+.+|.. .+.+++|+|+ ++++++++.||.|++||
T Consensus 161 ~~~~~~~~d~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp ------CGGGCCEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred ccccccCCCCCEEEEEEC----CCeEEEEeccCCcccceeeeeecCCCC-cEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 5899999986 899999999877 45566777655 8999999999 89999999999999999
Q ss_pred CCCCcee---EEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 617 MDNVNML---TSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 617 ~~~~~~~---~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+.+++.. .......+...|.+++|+|+++++++++.||.|++|++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9886421 11222234557999999999999999999999999998764
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.7e-27 Score=266.86 Aligned_cols=303 Identities=12% Similarity=0.089 Sum_probs=200.2
Q ss_pred CCCEEEEEE---ecCCCeEEEEEeCcCeEEEEeCCCCceeec-----ccceeeecccccc-----ceeeeeecCCCccEE
Q 001184 347 GSSVVSMDF---HPFHHTLLVVGCGDGEITLWDVGLRERLVS-----KPFKIWDMSNCSM-----MLQAAIVKDSSISVS 413 (1130)
Q Consensus 347 ~~~V~~v~f---spdg~~llasg~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~~~~~~h~~~V~ 413 (1130)
+....+++| +|++..+++.| .++.|++|+......... .....|....... .........|...+.
T Consensus 15 ~~~p~~~~w~~~~~~~~~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (393)
T 4gq1_A 15 NVRPYTTTWCSQSPSCSNLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGN 93 (393)
T ss_dssp TCCEEEEEECTTSGGGTTEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC-------
T ss_pred CCCCeEEEEeCCCCCCCCEEEEE-CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcc
Confidence 445667777 46666556655 477899998643221110 0111111110000 001112334555566
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEecCCccce--eeeeeecCCCCeeEEEEec--------CCCceEEEEEcCCCcEEEE
Q 001184 414 RVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLC--QSLEIDAHVGGVNDLAFSY--------PNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 414 ~v~~spdg~~las~~~d~~i~vwd~~~~~~~~--~~~~~~~h~~~V~~i~~s~--------d~~~l~l~s~s~d~~v~iw 483 (1130)
...+++++++||+++.|++|++||+.++.... ....+.+|.+.|++++|+| |++ +|+||+.|++|+||
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~W 171 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIW 171 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEE
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEE
Confidence 66677788899999999999999999886543 2235789999999999998 777 89999999999999
Q ss_pred e-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeee-------------------------
Q 001184 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY------------------------- 537 (1130)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~------------------------- 537 (1130)
| .++.++..+.+|..+|.+++|+|.. ..+|++++.|++|++||+++.......
T Consensus 172 d~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 250 (393)
T 4gq1_A 172 RLTDEGPILAGYPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHS 250 (393)
T ss_dssp EEETTEEEEEEEECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-----
T ss_pred ECCCCceeeeecCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeec
Confidence 9 7788888888999999999998743 358999999999999999876543321
Q ss_pred cCCCccEEEEEEe-cCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEE------------------EEEcC
Q 001184 538 DAPGLWCTTMLYS-ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGV------------------VQFDT 598 (1130)
Q Consensus 538 ~~~~~~v~~~~~s-~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~------------------~~~~~ 598 (1130)
..+...+.++.|+ ++++.+++++. ++.+++||+.+++....+..+.. .+.. ..++|
T Consensus 251 ~~~~~~v~~v~~~~~dg~~l~s~s~----d~~i~vwd~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (393)
T 4gq1_A 251 SGIASSLANVRWIGSDGSGILAMCK----SGAWLRWNLFANNDYNEISDSTM-KLGPKNLLPNVQGISLFPSLLGACPHP 325 (393)
T ss_dssp -CCSSSCSEEEEETTTTCEEEEECT----TSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred ccccccceeeeeecCCCCEEEEEeC----CCCEEEEECccCCCCceEeeecC-ccccEEEccccccccccCcceeEEEcc
Confidence 2345567888887 79999999976 89999999988776665544332 1211 22333
Q ss_pred -CC-CEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 599 -TR-NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 599 -~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
.+ .++++|+.||.|++||+.+++.......+.. +|.+++|+|||++||+++.+| +.+|.+
T Consensus 326 ~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~--~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 326 RYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM--PIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp SCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS--CEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC--cEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 23 3566788999999999999988877766554 799999999999999998776 556654
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=9e-26 Score=263.29 Aligned_cols=286 Identities=12% Similarity=0.098 Sum_probs=227.5
Q ss_pred ccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc---eeEEEecccC------------------------------
Q 001184 542 LWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA---LKRTYIGFRK------------------------------ 588 (1130)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~------------------------------ 588 (1130)
.++.+++|+++|++|+++. ++.|++||+.+++ .+..+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~~-----~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAII-----KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSN 79 (450)
T ss_dssp CCCCEEEECSSSSEEEEEE-----TTEEEEEEEETTTEEEEEEEEECCC-------------------------------
T ss_pred ccEEEEEecCCCCEEEEEe-----CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccC
Confidence 4678999999999777664 7899999999998 6666553221
Q ss_pred -----------------------ceeEEEEEcCCCCEE-EEEeCCCcEEEEeCC--CCceeEEEeccCCCCCcceEEEcC
Q 001184 589 -----------------------KSAGVVQFDTTRNRI-LAAGEDNQIKFWDMD--NVNMLTSTEAEGGLPSLPRLRFNK 642 (1130)
Q Consensus 589 -----------------------~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~i~~v~~s~ 642 (1130)
..|.+++|+|++++| ++++.||.|++||+. +++.+..+..+.+...|.+++|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp 159 (450)
T 2vdu_B 80 KGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE 159 (450)
T ss_dssp --------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT
T ss_pred cCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC
Confidence 158999999999996 889999999999999 888888887655555899999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCC
Q 001184 643 EGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGAD 722 (1130)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1130)
++++|++++.+|.+++|++.++......
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~---------------------------------------------------- 187 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPEEKFT---------------------------------------------------- 187 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCCSSCC----------------------------------------------------
T ss_pred CCCEEEEEeCCCcEEEEecCCccccccc----------------------------------------------------
Confidence 9999999999999999998765210000
Q ss_pred ccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEecc---CCeEEEeeeCCeEEeeecCCC
Q 001184 723 SAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNS---GIGILALWSNGVQKLWKWNRT 799 (1130)
Q Consensus 723 ~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~---g~~l~~~~~dg~i~iw~~~~~ 799 (1130)
+. .+ .+|...|.+++|+|+ +..+++++.|+.|++|++..+
T Consensus 188 ------------------~~--~~-----------------~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~ 230 (450)
T 2vdu_B 188 ------------------QE--PI-----------------LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC 230 (450)
T ss_dssp ------------------CC--CS-----------------EECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT
T ss_pred ------------------ce--ee-----------------ecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC
Confidence 00 00 127788999999999 999999999999999986542
Q ss_pred CCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeC------
Q 001184 800 EQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMS------ 872 (1130)
Q Consensus 800 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~------ 872 (1130)
..+.. +..+|...|.+++|+ ++++|++++ |+.|++||+.+++++..+..
T Consensus 231 ----------------------~~~~~-~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~ 286 (450)
T 2vdu_B 231 ----------------------FIVDK-WLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKP 286 (450)
T ss_dssp ----------------------TCEEE-ECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGG
T ss_pred ----------------------ceeee-eecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhh
Confidence 11111 123688999999999 999999998 89999999999999888863
Q ss_pred -------------------CCCCeEEEEEeCCCCcEEEEEe-CCCcEEEEEe--ecC---eEEEEEecCCCCeeEEEEcc
Q 001184 873 -------------------PPPASTFLAFHPQDNNIIAIGM-EDSTIQIYNV--RVD---EVKTKLKGHQKHITGLAFST 927 (1130)
Q Consensus 873 -------------------~~~~i~~l~~sp~~~~~lasg~-~dg~v~iwd~--~~~---~~~~~l~~h~~~V~~l~~s~ 927 (1130)
....|.+++|+| ++++|++++ .|+.|++|++ .++ +.+..+.+| +.|.+++|+|
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~ 364 (450)
T 2vdu_B 287 YLNDQHLAPPRFQNENNDIIEFAVSKIIKSK-NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHN 364 (450)
T ss_dssp GCCTTSBC----------CBCCCEEEEEECS-SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEET
T ss_pred hhhhcccccccccccccccceEEEEEEEEeC-CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecC
Confidence 235689999999 888898888 8999999999 666 778888888 8899999999
Q ss_pred CCCeEEEE-eC------CCcEEEEECCC
Q 001184 928 NLNILVSS-GS------DAQLIFWNTDT 948 (1130)
Q Consensus 928 dg~~L~s~-s~------Dg~i~vwd~~~ 948 (1130)
++ .+++. +. +..|.+|.+..
T Consensus 365 ~~-~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 365 DE-FQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp TE-EEEEECCTTCCSSCCCSEEEEEEET
T ss_pred Cc-EEEEEecccCCCCCCcceEEEEEEc
Confidence 64 44444 32 45588888764
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.5e-27 Score=262.16 Aligned_cols=267 Identities=9% Similarity=0.069 Sum_probs=210.0
Q ss_pred EEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCeE
Q 001184 354 DFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLI 433 (1130)
Q Consensus 354 ~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i 433 (1130)
.+.++++ ++++|+.||.|+|||+.+++.+.. +. ...|.+++|+|+ +++++.|++|
T Consensus 43 ~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~-------------------~~--~~~v~~~~~~~~---~~s~s~D~~i 97 (343)
T 3lrv_A 43 SMYYDKW-VCMCRCEDGALHFTQLKDSKTITT-------------------IT--TPNPRTGGEHPA---IISRGPCNRL 97 (343)
T ss_dssp SSSEEEE-EEEEEEETTEEEEEEESSSSCEEE-------------------EE--EECCCTTCCCCS---EEEECSTTEE
T ss_pred hhcCCCC-EEEEECCCCcEEEEECCCCcEEEE-------------------Ee--cCCceeeeeCCc---eEEecCCCeE
Confidence 4456676 699999999999999999887652 11 356778889998 9999999999
Q ss_pred EEEEec---------CCccceeeeeeecCCCCeeEEEEec--CCCceEEEEEcCCCcEEEEe-cCCCeeeEec-CCCcCE
Q 001184 434 HLYTYQ---------GSNDLCQSLEIDAHVGGVNDLAFSY--PNKQLCIVTCGDDKLIRVWD-LSGRKLFQFE-GHEAPV 500 (1130)
Q Consensus 434 ~vwd~~---------~~~~~~~~~~~~~h~~~V~~i~~s~--d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~-~h~~~v 500 (1130)
++|+.. +++.+.. ...+|.+.|.+++|+| +++ ++++++.|++|++|| .+++.+..+. .|...|
T Consensus 98 ~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i 173 (343)
T 3lrv_A 98 LLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEY 173 (343)
T ss_dssp EEEETTTEEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSCCC
T ss_pred EEEEccCceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCCce
Confidence 999765 3332221 1236778999999999 998 899999999999999 7777766664 455689
Q ss_pred EEEeecccCCccEEEEEecCCcEEEEEccCCcce-eeecC-CCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc
Q 001184 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR-VDYDA-PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1130)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1130)
.+++|+| ++.+|++|+.||.|++||+++.... ..+.. |..+|.+++|+|+|.+|++++ ++.|++||+++++
T Consensus 174 ~~~~~~p--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-----~~~v~iwd~~~~~ 246 (343)
T 3lrv_A 174 SSGVLHK--DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-----DQTVVCFDLRKDV 246 (343)
T ss_dssp CEEEECT--TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-----SSBEEEEETTSST
T ss_pred EEEEECC--CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-----CCeEEEEEcCCCC
Confidence 9999965 5689999999999999999998877 67777 889999999999999999997 4499999999987
Q ss_pred eeEEEecccC--cee--EEEEEcCCCCEEEEEeC-CCcEEEEeCCCCceeEEEeccCCCCCcceEEEcC---CCCEEEEE
Q 001184 579 LKRTYIGFRK--KSA--GVVQFDTTRNRILAAGE-DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK---EGNLLVVT 650 (1130)
Q Consensus 579 ~~~~~~~~~~--~~v--~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~---~~~~l~~~ 650 (1130)
....+..+.. ..+ .+++|+|++++|++++. |+.+++|++......... .++..+.|++ +...++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~ 320 (343)
T 3lrv_A 247 GTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDVV 320 (343)
T ss_dssp TCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEEE
T ss_pred cceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEEE
Confidence 7655443111 122 36999999999999998 999999999766543332 1466778888 88899999
Q ss_pred eCCCcEEEEEcC
Q 001184 651 TADQGIKILANA 662 (1130)
Q Consensus 651 ~~dg~i~iw~~~ 662 (1130)
+.|+.+.++-..
T Consensus 321 ~~d~~~~~~~~~ 332 (343)
T 3lrv_A 321 CGDGGIAAILKT 332 (343)
T ss_dssp EETTEEEEEEEC
T ss_pred ecCCceEEEEec
Confidence 999999987543
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-25 Score=261.35 Aligned_cols=332 Identities=12% Similarity=0.069 Sum_probs=257.4
Q ss_pred cCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeC--CCCceeEEEec
Q 001184 508 KENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE--SEGALKRTYIG 585 (1130)
Q Consensus 508 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~--~~~~~~~~~~~ 585 (1130)
++++.++++++.|++|.+||..+++....+..... +..++|+|||++|++++. ++.|.+||+ .+++.+..+..
T Consensus 146 ~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~----d~~V~v~D~~~~t~~~~~~i~~ 220 (543)
T 1nir_A 146 DLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGR----DARIDMIDLWAKEPTKVAEIKI 220 (543)
T ss_dssp CGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEET----TSEEEEEETTSSSCEEEEEEEC
T ss_pred CCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECC----CCeEEEEECcCCCCcEEEEEec
Confidence 34567889999999999999999888877764333 889999999999999985 699999999 88888888874
Q ss_pred ccCceeEEEEEcC----CCCEEEEEeC-CCcEEEEeCCCCceeEEEeccC---------CCCCcceEEEcCCCCE-EEEE
Q 001184 586 FRKKSAGVVQFDT----TRNRILAAGE-DNQIKFWDMDNVNMLTSTEAEG---------GLPSLPRLRFNKEGNL-LVVT 650 (1130)
Q Consensus 586 ~~~~~v~~~~~~~----~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~---------~~~~i~~v~~s~~~~~-l~~~ 650 (1130)
......++|+| +|+++++++. ++.|.+||..+++++..+...+ ....+..+.++|++.. +++.
T Consensus 221 --g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~ 298 (543)
T 1nir_A 221 --GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV 298 (543)
T ss_dssp --CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred --CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence 23578899999 9999999884 8999999999999998887532 1225778899996654 4556
Q ss_pred eCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCC
Q 001184 651 TADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEK 730 (1130)
Q Consensus 651 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1130)
..++.|.+||..+.... .
T Consensus 299 ~~~g~i~vvd~~~~~~l-~------------------------------------------------------------- 316 (543)
T 1nir_A 299 KETGKVLLVNYKDIDNL-T------------------------------------------------------------- 316 (543)
T ss_dssp TTTTEEEEEECTTSSSC-E-------------------------------------------------------------
T ss_pred CCCCeEEEEEecCCCcc-e-------------------------------------------------------------
Confidence 67888999987554100 0
Q ss_pred cccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccc
Q 001184 731 PRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAA 810 (1130)
Q Consensus 731 ~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 810 (1130)
+.. +
T Consensus 317 ------------~~~---------------------------------------------i------------------- 320 (543)
T 1nir_A 317 ------------VTS---------------------------------------------I------------------- 320 (543)
T ss_dssp ------------EEE---------------------------------------------E-------------------
T ss_pred ------------eEE---------------------------------------------e-------------------
Confidence 000 0
Q ss_pred cccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe--CCeEEEEECCCceeEEEEeC----CCCCeEEEEEeC
Q 001184 811 VAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMS----PPPASTFLAFHP 884 (1130)
Q Consensus 811 ~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~sp 884 (1130)
.+...+..++|+|||+++++++ +++|.+||..+++++..+.. |.+....+ ++|
T Consensus 321 --------------------~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p 379 (543)
T 1nir_A 321 --------------------GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHP 379 (543)
T ss_dssp --------------------ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EET
T ss_pred --------------------ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCC
Confidence 0123355689999999877665 78999999999999988874 54444333 578
Q ss_pred CCCcEEEEEe-CCCcEEEEEeec-------CeEEEEEecCCCCeeEEEEccCCCeEEEEe-------CCCcEEEEECCCC
Q 001184 885 QDNNIIAIGM-EDSTIQIYNVRV-------DEVKTKLKGHQKHITGLAFSTNLNILVSSG-------SDAQLIFWNTDTW 949 (1130)
Q Consensus 885 ~~~~~lasg~-~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s-------~Dg~i~vwd~~~~ 949 (1130)
+++.+++++. .|++|.+||+.+ +++++++.+|.+.+..++|+|||++|++++ .+++|.+||+.++
T Consensus 380 ~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~ 459 (543)
T 1nir_A 380 KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL 459 (543)
T ss_dssp TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred CCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCC
Confidence 5578888876 689999999998 899999999999999999999999999987 2779999999998
Q ss_pred ccc-ceeeEecc--CCCCCCCeEEEEEcCCCcEEEEE------cCCcEEEEECCCceeeeeeecC
Q 001184 950 EKR-KSIAIQLP--AGKLPVGETRVQFHSDQVRLLVN------HETQLAIYDGSKMECIRQWVPQ 1005 (1130)
Q Consensus 950 ~~~-~~~~~~~~--~~~~~~~v~~~~~s~d~~~l~~~------~d~~i~v~d~~~~~~~~~~~~~ 1005 (1130)
+.. ....+... .......+..+.|+|||+.+.++ .++.|.|||.++++++..+...
T Consensus 460 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 460 DAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp TSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred CCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCC
Confidence 764 22111100 01123678999999999999974 2689999999999999888754
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.3e-25 Score=259.34 Aligned_cols=274 Identities=11% Similarity=0.099 Sum_probs=215.7
Q ss_pred EEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeec-CCCccEEEEEEcCCCCEEEEEeCCCe
Q 001184 354 DFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVK-DSSISVSRVAWSPDGNFIGVAFTKHL 432 (1130)
Q Consensus 354 ~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~spdg~~las~~~d~~ 432 (1130)
+|+|+++ ++++++.|++|.+||..+++++.. +. ++. +.+++|||||++|++++.|++
T Consensus 144 ~~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~-------------------i~~g~~--~~~v~~spdg~~l~v~~~d~~ 201 (543)
T 1nir_A 144 DLDLPNL-FSVTLRDAGQIALVDGDSKKIVKV-------------------IDTGYA--VHISRMSASGRYLLVIGRDAR 201 (543)
T ss_dssp CCCGGGE-EEEEEGGGTEEEEEETTTCCEEEE-------------------EECSTT--EEEEEECTTSCEEEEEETTSE
T ss_pred ccCCCCE-EEEEEcCCCeEEEEECCCceEEEE-------------------EecCcc--cceEEECCCCCEEEEECCCCe
Confidence 3789886 789999999999999999988752 33 443 889999999999999999999
Q ss_pred EEEEEe--cCCccceeeeeeecCCCCeeEEEEec----CCCceEEEEEc-CCCcEEEEe-cCCCeeeEecCC--------
Q 001184 433 IHLYTY--QGSNDLCQSLEIDAHVGGVNDLAFSY----PNKQLCIVTCG-DDKLIRVWD-LSGRKLFQFEGH-------- 496 (1130)
Q Consensus 433 i~vwd~--~~~~~~~~~~~~~~h~~~V~~i~~s~----d~~~l~l~s~s-~d~~v~iwd-~~~~~~~~~~~h-------- 496 (1130)
|.+||+ .+++.+. ++. +...+..++|+| ||+ ++++++ .+++|.+|| .+++++..+..+
T Consensus 202 V~v~D~~~~t~~~~~---~i~-~g~~p~~va~sp~~~~dg~--~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~ 275 (543)
T 1nir_A 202 IDMIDLWAKEPTKVA---EIK-IGIEARSVESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT 275 (543)
T ss_dssp EEEEETTSSSCEEEE---EEE-CCSEEEEEEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred EEEEECcCCCCcEEE---EEe-cCCCcceEEeCCCcCCCCC--EEEEEEccCCeEEEEeccccccceeecccCcccCccc
Confidence 999999 7766544 444 455689999999 999 666666 589999999 888988887642
Q ss_pred --C-cCEEEEeecccCCccEEEEEecCCcEEEEEccCCccee--eecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEE
Q 001184 497 --E-APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV--DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1130)
Q Consensus 497 --~-~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1130)
. ..+.++.+++.. ..++++...++.|.+||+.+.+... .+. +...+..+.|+|+|+++++++. .+++|.+
T Consensus 276 ~~~~~~v~~i~~s~~~-~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~---~~~~v~v 350 (543)
T 1nir_A 276 YHPEPRVAAIIASHEH-PEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAAN---NSNKVAV 350 (543)
T ss_dssp EESCCCEEEEEECSSS-SEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEG---GGTEEEE
T ss_pred cccCCceEEEEECCCC-CEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEec---CCCeEEE
Confidence 2 368888887643 3677888889999999998765433 332 4556788999999998887653 2779999
Q ss_pred eeCCCCceeEEEec----ccCceeEEEEEcCC-CCEEEEEe-CCCcEEEEeCCC-------CceeEEEeccCCCCCcceE
Q 001184 572 WNESEGALKRTYIG----FRKKSAGVVQFDTT-RNRILAAG-EDNQIKFWDMDN-------VNMLTSTEAEGGLPSLPRL 638 (1130)
Q Consensus 572 wd~~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~~~~-~dg~i~vwd~~~-------~~~~~~~~~~~~~~~i~~v 638 (1130)
||..+++++..+.. |.. ....+ ++|+ +..++++. .|++|.+||+.+ .+.+.++..++. .+..+
T Consensus 351 ~D~~tg~l~~~i~~g~~ph~g-~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~--~~~~v 426 (543)
T 1nir_A 351 IDSKDRRLSALVDVGKTPHPG-RGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG--GSLFI 426 (543)
T ss_dssp EETTTTEEEEEEECSSSBCCT-TCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS--CCCCE
T ss_pred EECCCCeEEEeeccCCCCCCC-CCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC--CceEE
Confidence 99999999988874 222 12222 5777 45555654 589999999998 889999987764 57889
Q ss_pred EEcCCCCEEEEEeC-------CCcEEEEEcCCC
Q 001184 639 RFNKEGNLLVVTTA-------DQGIKILANADG 664 (1130)
Q Consensus 639 ~~s~~~~~l~~~~~-------dg~i~iw~~~~~ 664 (1130)
.++|++++|++++. +++|.+||+.+.
T Consensus 427 ~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~ 459 (543)
T 1nir_A 427 KTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL 459 (543)
T ss_dssp ECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred EcCCCCCcEEEecCCCCCcccCceEEEEECCCC
Confidence 99999999999872 679999998776
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=265.26 Aligned_cols=247 Identities=9% Similarity=-0.015 Sum_probs=174.6
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC-----
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP----- 419 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp----- 419 (1130)
.|...+....++|+++ +||+|+.|++|+|||+.+++...... ...+.+|.+.|.+++|+|
T Consensus 87 ~~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~--------------~~~~~gH~~~v~~v~~~p~~~~~ 151 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHV--------------LGGKSGHHNFVNDIDIADVYSAD 151 (393)
T ss_dssp ----------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEE--------------ECTTTSCSSCEEEEEEEEEECTT
T ss_pred ccCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeee--------------ecccCCCCCceEEEEEccccccc
Confidence 4555666666777776 79999999999999999887653211 124789999999999998
Q ss_pred ---CCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeE---
Q 001184 420 ---DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQ--- 492 (1130)
Q Consensus 420 ---dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~--- 492 (1130)
||++||+|+.|++|+|||+.++.++. .+.+|...|.+++|+|++.. +|++++.|++|++|| .+++....
T Consensus 152 ~~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~~~~~ 227 (393)
T 4gq1_A 152 NRLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAEENSQ 227 (393)
T ss_dssp CSEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC-------
T ss_pred cCCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCcccccccc
Confidence 89999999999999999998876444 46779999999999999865 799999999999999 55543322
Q ss_pred ----------------------ecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEE-
Q 001184 493 ----------------------FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLY- 549 (1130)
Q Consensus 493 ----------------------~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~- 549 (1130)
..+|...+.++.|.. +++..|++++.|+++++||+........+..+...+..+.+
T Consensus 228 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~-~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~ 306 (393)
T 4gq1_A 228 TELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIG-SDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLL 306 (393)
T ss_dssp ---CSCCCSEEEESGGGC------CCSSSCSEEEEET-TTTCEEEEECTTSEEEEEEC-------------------CCS
T ss_pred cCCcccceEEecccccceeeeecccccccceeeeeec-CCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEc
Confidence 246778888888863 56789999999999999999876655554444333333322
Q ss_pred -----------------ec-CCCe-EEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCC
Q 001184 550 -----------------SA-DGSR-LFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDN 610 (1130)
Q Consensus 550 -----------------s~-~~~~-l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 610 (1130)
.| .+.. +++++. ++.|++||..+++....+.+|.. .|.+++|+|+|++|++++.+|
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~----Dg~V~lwd~~~~~~~~~~~~~~~-~V~svafspdG~~LA~as~~G 381 (393)
T 4gq1_A 307 PNVQGISLFPSLLGACPHPRYMDYFATAHSQ----HGLIQLINTYEKDSNSIPIQLGM-PIVDFCWHQDGSHLAIATEGS 381 (393)
T ss_dssp CSEEEECSSCCSSCCEECSSCTTEEEEEETT----TTEEEEEETTCTTCCEEEEECSS-CEEEEEECTTSSEEEEEESSE
T ss_pred cccccccccCcceeEEEccCCCCEEEEEECC----CCEEEEEECCCCcEEEEecCCCC-cEEEEEEcCCCCEEEEEeCCC
Confidence 22 2334 444443 89999999999999888887766 899999999999999998766
Q ss_pred cEEEEeC
Q 001184 611 QIKFWDM 617 (1130)
Q Consensus 611 ~i~vwd~ 617 (1130)
+.+|.+
T Consensus 382 -v~lvrL 387 (393)
T 4gq1_A 382 -VLLTRL 387 (393)
T ss_dssp -EEEEEE
T ss_pred -eEEEEE
Confidence 556654
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.8e-23 Score=255.91 Aligned_cols=302 Identities=12% Similarity=0.091 Sum_probs=209.6
Q ss_pred CCCEEEEEEecCCCeEEEEEeC-cC-----eEEEEeCCCCceeecccceeeecc-----cccccee-eeeecCCCccEEE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCG-DG-----EITLWDVGLRERLVSKPFKIWDMS-----NCSMMLQ-AAIVKDSSISVSR 414 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~-dg-----~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~h~~~V~~ 414 (1130)
...|.+++|||||++ |++++. |+ .|++||+.+++............. ......+ ..-+ .....|.+
T Consensus 36 ~~~~~~~~~SpdG~~-la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSR-VTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRI-AAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSSE-EEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC---------------------CCEESCC
T ss_pred CCCCCCceEecCCCE-EEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhh-ccccCcce
Confidence 567999999999995 777776 88 899999999876542110000000 0000000 0000 00134889
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEecCCc--cceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeee
Q 001184 415 VAWSPDGNFIGVAFTKHLIHLYTYQGSN--DLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLF 491 (1130)
Q Consensus 415 v~~spdg~~las~~~d~~i~vwd~~~~~--~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~ 491 (1130)
++|||||++|++++. +.|++||+.++. ... .+..|...+.+++|||||+ .|+.++ ++.|++|| .+++...
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEE
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEE
Confidence 999999999999986 899999999872 222 3667888999999999999 677776 56899999 4554444
Q ss_pred EecCCCcC----------------EEEEeecccCCccEEEEEecCC---------------------------------c
Q 001184 492 QFEGHEAP----------------VYSVCPHQKENIHFIFSTAVDG---------------------------------K 522 (1130)
Q Consensus 492 ~~~~h~~~----------------v~~~~~~~~~~~~~l~s~s~dg---------------------------------~ 522 (1130)
....+... +.+++|+ +||+.|++++.|+ .
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~S--pDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~ 264 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWA--PDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK 264 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEEC--TTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred eccCCccceeccccceeeeeccccccceEEC--CCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence 33333332 3667775 5668888887765 7
Q ss_pred EEEEEccC-Ccceeeec--CCCccEEEEEEecCCCeEEEeeec-CCCCcEEEEeeCCCCceeEEEecccCc---eeEEEE
Q 001184 523 IKAWLYDN-VGSRVDYD--APGLWCTTMLYSADGSRLFSCGTS-KEGDSHLVEWNESEGALKRTYIGFRKK---SAGVVQ 595 (1130)
Q Consensus 523 i~vwd~~~-~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~-~~~~~~i~~wd~~~~~~~~~~~~~~~~---~v~~~~ 595 (1130)
|.+||+.+ ++...... .+...+..++| |||++|++++.+ ...+..|++||..+++....+..+... .+..++
T Consensus 265 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~ 343 (741)
T 2ecf_A 265 LGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLR 343 (741)
T ss_dssp EEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCE
T ss_pred EEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceE
Confidence 88899887 66544332 35668999999 999999987642 234688999999999888777665432 235789
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCC-CCceeEEEeccCCCCCcceE-EEcCCCCEEEEEe-CCC--cEEEEEcCC
Q 001184 596 FDTTRNRILAAGEDNQIKFWDMD-NVNMLTSTEAEGGLPSLPRL-RFNKEGNLLVVTT-ADQ--GIKILANAD 663 (1130)
Q Consensus 596 ~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~i~~v-~~s~~~~~l~~~~-~dg--~i~iw~~~~ 663 (1130)
|+|+|+++++++.||.+++|.++ .+. ...+..+. ..+..+ .|+|+++.|+..+ .++ .++||++..
T Consensus 344 ~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~--~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 344 FLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGN--WSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp ECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSS--SCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred ECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecc--eEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 99999988889999988888765 344 55554432 356676 5999998776554 444 889998753
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-23 Score=240.79 Aligned_cols=296 Identities=10% Similarity=0.026 Sum_probs=223.9
Q ss_pred CCCEEEEEEecCCCeEEEEEe----CcC----eEEEEeC--CCCceeecccceeeeccccccceeeeeecCCCccEEEEE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGC----GDG----EITLWDV--GLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVA 416 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~----~dg----~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 416 (1130)
...|...+|++.|..++++|+ .|| +|+|||+ .+++.+... .+.+|...+..++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 124 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQN-----------------SYKVNKQWLRYAG 124 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEE-----------------EEEECGGGHHHHH
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeee-----------------EEEcChhHHHHHH
Confidence 357788899999987788886 467 8999999 888866321 3557777777777
Q ss_pred EcC--------------CCCEEEEEeCC------CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcC
Q 001184 417 WSP--------------DGNFIGVAFTK------HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD 476 (1130)
Q Consensus 417 ~sp--------------dg~~las~~~d------~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~ 476 (1130)
+++ .+..+++++.+ +.|++||+.++. .+ .+.+|...|.+++|+|||+ .|++++.
T Consensus 125 ~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~ 198 (415)
T 2hqs_A 125 HTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTF 198 (415)
T ss_dssp HHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEEC
T ss_pred HHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEe
Confidence 764 26677776654 799999998643 33 5678999999999999999 7888887
Q ss_pred CC---cEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEE-EEecCCc--EEEEEccCCcceeeecCCCccEEEEEE
Q 001184 477 DK---LIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIF-STAVDGK--IKAWLYDNVGSRVDYDAPGLWCTTMLY 549 (1130)
Q Consensus 477 d~---~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~s~dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~ 549 (1130)
|+ .|++|| .+++. ..+..|...+.+++|+| +++.|+ +++.++. |++||++++.. ..+..+...+.+++|
T Consensus 199 ~~~~~~i~~~d~~tg~~-~~l~~~~~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~ 274 (415)
T 2hqs_A 199 ESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTW 274 (415)
T ss_dssp TTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEE
T ss_pred cCCCcEEEEEECCCCcE-EEeecCCCcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEE
Confidence 75 999999 55555 46778889999999965 556666 6666665 89999987654 456667778999999
Q ss_pred ecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceeEEE
Q 001184 550 SADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED---NQIKFWDMDNVNMLTST 626 (1130)
Q Consensus 550 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~ 626 (1130)
+|||++|++++. .++...|++||..+++.. .+..+ ...+..++|+|+|++|++++.+ +.|++||+.+++.. .+
T Consensus 275 spdg~~l~~~s~-~~g~~~i~~~d~~~~~~~-~l~~~-~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l 350 (415)
T 2hqs_A 275 FPDSQNLAFTSD-QAGRPQVYKVNINGGAPQ-RITWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VL 350 (415)
T ss_dssp CTTSSEEEEEEC-TTSSCEEEEEETTSSCCE-ECCCS-SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-EC
T ss_pred CCCCCEEEEEEC-CCCCcEEEEEECCCCCEE-EEecC-CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Ee
Confidence 999999998873 233458999999887753 33333 3367889999999999988764 58999999988774 33
Q ss_pred eccCCCCCcceEEEcCCCCEEEEEeCCC---cEEEEEcCCCchhhhhhccccccc
Q 001184 627 EAEGGLPSLPRLRFNKEGNLLVVTTADQ---GIKILANADGLRALRAIETRAYET 678 (1130)
Q Consensus 627 ~~~~~~~~i~~v~~s~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~ 678 (1130)
..+. .+.+++|+|+|++|++++.++ .|++|++..+ ..+.+..+...+
T Consensus 351 ~~~~---~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~--~~~~l~~~~~~v 400 (415)
T 2hqs_A 351 SSTF---LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR--FKARLPATDGQV 400 (415)
T ss_dssp CCSS---SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC--CEEECCCSSSEE
T ss_pred cCCC---CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC--cEEEeeCCCCCC
Confidence 3322 689999999999999988877 7999998654 344455544443
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.2e-22 Score=248.72 Aligned_cols=246 Identities=10% Similarity=0.030 Sum_probs=184.3
Q ss_pred CccEEEEEEcCCCCEEEEEeC-CC-----eEEEEEecCCccceeeeeeecCC----------------------CCeeEE
Q 001184 409 SISVSRVAWSPDGNFIGVAFT-KH-----LIHLYTYQGSNDLCQSLEIDAHV----------------------GGVNDL 460 (1130)
Q Consensus 409 ~~~V~~v~~spdg~~las~~~-d~-----~i~vwd~~~~~~~~~~~~~~~h~----------------------~~V~~i 460 (1130)
...|.+++|||||++||+++. |+ .|++||+.+++.... .....+. ..|.++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLL-VDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEE-ECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEc-cchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 457999999999999999998 88 899999999875431 1112222 238899
Q ss_pred EEecCCCceEEEEEcCCCcEEEEecCCC---eeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeee
Q 001184 461 AFSYPNKQLCIVTCGDDKLIRVWDLSGR---KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY 537 (1130)
Q Consensus 461 ~~s~d~~~l~l~s~s~d~~v~iwd~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 537 (1130)
+|||||+ .|++++. +.|++||..+. .+..+..|...+..++|+| ||+.|++++ ++.|++||+.++......
T Consensus 115 ~~SpDg~--~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP--DG~~la~~~-~~~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 115 QWSPDAQ--RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP--KGGFVSFIR-GRNLWVIDLASGRQMQLT 188 (741)
T ss_dssp EECTTSS--EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT--TSSEEEEEE-TTEEEEEETTTTEEEECC
T ss_pred EECCCCC--EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC--CCCEEEEEe-CCcEEEEecCCCCEEEec
Confidence 9999999 6777765 99999995444 6677888889999999965 567888877 569999999876655433
Q ss_pred cCCCcc----------------EEEEEEecCCCeEEEeeecCC-----------------------------CCcEEEEe
Q 001184 538 DAPGLW----------------CTTMLYSADGSRLFSCGTSKE-----------------------------GDSHLVEW 572 (1130)
Q Consensus 538 ~~~~~~----------------v~~~~~s~~~~~l~~~~~~~~-----------------------------~~~~i~~w 572 (1130)
..+... +.+++|+|||++|++++.+.. ....|++|
T Consensus 189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~ 268 (741)
T 2ecf_A 189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI 268 (741)
T ss_dssp CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence 333322 477999999999999875321 11288999
Q ss_pred eCCC-CceeEEEec-ccCceeEEEEEcCCCCEEEEEeC-----CCcEEEEeCCCCceeEEEeccCCC--CCcceEEEcCC
Q 001184 573 NESE-GALKRTYIG-FRKKSAGVVQFDTTRNRILAAGE-----DNQIKFWDMDNVNMLTSTEAEGGL--PSLPRLRFNKE 643 (1130)
Q Consensus 573 d~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~~~~--~~i~~v~~s~~ 643 (1130)
|+.+ ++....... .+...+..++| |||++|++++. +..|++||+.+++....+..+... ..+..++|+||
T Consensus 269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spd 347 (741)
T 2ecf_A 269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDD 347 (741)
T ss_dssp CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTT
T ss_pred ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCC
Confidence 9988 876554433 23447888999 99999987654 567999999999887766554321 13568999999
Q ss_pred CCEEEEEeCCCcEEEEEcC
Q 001184 644 GNLLVVTTADQGIKILANA 662 (1130)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~ 662 (1130)
|+++++++.+|.++||.++
T Consensus 348 g~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 348 GSILWSSERTGFQHLYRID 366 (741)
T ss_dssp SCEEEEECTTSSCEEEEEC
T ss_pred CeEEEEecCCCccEEEEEc
Confidence 9988888889888888754
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-22 Score=230.71 Aligned_cols=290 Identities=11% Similarity=0.042 Sum_probs=213.7
Q ss_pred ccccCCC----CCccccc--CCcccceeeec-cCCCCEEEEEEecC--------------CCeEEEEEeC--c---CeEE
Q 001184 320 ATYPVPS----QQATWSL--DDLPRAVACTM-HQGSSVVSMDFHPF--------------HHTLLVVGCG--D---GEIT 373 (1130)
Q Consensus 320 ~~~s~~~----~~~~~~~--~~~~~~~~~~~-~h~~~V~~v~fspd--------------g~~llasg~~--d---g~i~ 373 (1130)
+.+..+| .+.+|+. ..........+ +|...+..+++++. +.++++++.. + +.|+
T Consensus 83 ~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~ 162 (415)
T 2hqs_A 83 VTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELR 162 (415)
T ss_dssp EEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEE
T ss_pred EEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEE
Confidence 3344566 6777877 43321111223 48888888888861 5554444433 2 7999
Q ss_pred EEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCC---eEEEEEecCCccceeeeee
Q 001184 374 LWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKH---LIHLYTYQGSNDLCQSLEI 450 (1130)
Q Consensus 374 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~---~i~vwd~~~~~~~~~~~~~ 450 (1130)
+||+.++... .+.+|...|.+++|||||++||+++.++ .|++||+.+++.. .+
T Consensus 163 i~d~~g~~~~--------------------~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~----~l 218 (415)
T 2hqs_A 163 VSDYDGYNQF--------------------VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----QV 218 (415)
T ss_dssp EEETTSCSCE--------------------EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----EE
T ss_pred EEcCCCCCCE--------------------EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE----Ee
Confidence 9999854432 3567889999999999999999999885 9999999998753 36
Q ss_pred ecCCCCeeEEEEecCCCceEEEEEcCCCc--EEEEecCCCeeeEecCCCcCEEEEeecccCCccEEEEEec-CC--cEEE
Q 001184 451 DAHVGGVNDLAFSYPNKQLCIVTCGDDKL--IRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV-DG--KIKA 525 (1130)
Q Consensus 451 ~~h~~~V~~i~~s~d~~~l~l~s~s~d~~--v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg--~i~v 525 (1130)
..|.+.+.+++|+|||+. ++++++.|+. |++||..+.....+..|...+.+++|+| +++.|++++. ++ .|.+
T Consensus 219 ~~~~~~~~~~~~spdg~~-la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~sp--dg~~l~~~s~~~g~~~i~~ 295 (415)
T 2hqs_A 219 ASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP--DSQNLAFTSDQAGRPQVYK 295 (415)
T ss_dssp ECCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECT--TSSEEEEEECTTSSCEEEE
T ss_pred ecCCCcccCEEEcCCCCE-EEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECC--CCCEEEEEECCCCCcEEEE
Confidence 678889999999999994 3337766655 9999954444577888999999999965 5677887775 45 5777
Q ss_pred EEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEE
Q 001184 526 WLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILA 605 (1130)
Q Consensus 526 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 605 (1130)
||+.++.. ..+..+...+.+++|+|+|++|++++.. ++...|++||+.+++.. .+..+. .+..++|+|+|++|++
T Consensus 296 ~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~-~g~~~i~~~d~~~~~~~-~l~~~~--~~~~~~~spdg~~l~~ 370 (415)
T 2hqs_A 296 VNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGVQ-VLSSTF--LDETPSLAPNGTMVIY 370 (415)
T ss_dssp EETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEEC-SSCEEEEEEETTTCCEE-ECCCSS--SCEEEEECTTSSEEEE
T ss_pred EECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECc-CCceEEEEEECCCCCEE-EecCCC--CcCCeEEcCCCCEEEE
Confidence 78876553 3445566788999999999999988752 23579999999988774 444432 6888999999999999
Q ss_pred EeCCC---cEEEEeCCCCceeEEEeccCCCCCcceEEEcCCC
Q 001184 606 AGEDN---QIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEG 644 (1130)
Q Consensus 606 ~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~ 644 (1130)
++.++ .|++||+.. .....+..+. ..|.+++|+|..
T Consensus 371 ~s~~~~~~~l~~~d~~g-~~~~~l~~~~--~~v~~~~~~~~~ 409 (415)
T 2hqs_A 371 SSSQGMGSVLNLVSTDG-RFKARLPATD--GQVKFPAWSPYL 409 (415)
T ss_dssp EEEETTEEEEEEEETTS-CCEEECCCSS--SEEEEEEECCCC
T ss_pred EEcCCCccEEEEEECCC-CcEEEeeCCC--CCCcCCcccccc
Confidence 88777 799999874 4455555443 379999999954
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.90 E-value=6.5e-23 Score=255.42 Aligned_cols=288 Identities=9% Similarity=0.086 Sum_probs=208.7
Q ss_pred CCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCc---cEEEEEEcCCCCEE
Q 001184 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSI---SVSRVAWSPDGNFI 424 (1130)
Q Consensus 348 ~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~v~~spdg~~l 424 (1130)
..+.+++|||||+ ++++ +.||+|++||+.+++... ++.+|.. .|.+++|||||++|
T Consensus 17 ~~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~~~~-------------------~~~~~~~~~~~v~~~~~SpDg~~l 75 (723)
T 1xfd_A 17 IHDPEAKWISDTE-FIYR-EQKGTVRLWNVETNTSTV-------------------LIEGKKIESLRAIRYEISPDREYA 75 (723)
T ss_dssp CCCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGCCCEE-------------------EECTTTTTTTTCSEEEECTTSSEE
T ss_pred ccccccEEcCCCc-EEEE-eCCCCEEEEECCCCcEEE-------------------EeccccccccccceEEECCCCCEE
Confidence 3567889999998 4666 689999999999987653 3445554 49999999999999
Q ss_pred EEEeCC---------CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEec
Q 001184 425 GVAFTK---------HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFE 494 (1130)
Q Consensus 425 as~~~d---------~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~ 494 (1130)
|+++.+ +.|.+||+.+++. .......+|...+..++|||||+ .|+.++. +.|++|| .+++......
T Consensus 76 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~ 151 (723)
T 1xfd_A 76 LFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVS 151 (723)
T ss_dssp EEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEEC
T ss_pred EEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEec
Confidence 999874 7888999999875 32223345666699999999999 5677665 7999999 6666655555
Q ss_pred CCCcCE------------------EEEeecccCCccEEEEEecCC----------------------------------c
Q 001184 495 GHEAPV------------------YSVCPHQKENIHFIFSTAVDG----------------------------------K 522 (1130)
Q Consensus 495 ~h~~~v------------------~~~~~~~~~~~~~l~s~s~dg----------------------------------~ 522 (1130)
.+...+ .+++|+ +||+.|++++.|+ .
T Consensus 152 ~~~~~~~~~g~~~~v~~ee~~~~~~~~~~S--pDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 229 (723)
T 1xfd_A 152 TGKEGVIYNGLSDWLYEEEILKTHIAHWWS--PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSIS 229 (723)
T ss_dssp CCBTTTEEEEECCHHHHHTTSSSSEEEEEC--TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEE
T ss_pred CCCCCceECcccceeEEEEeccCcceEEEC--CCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeE
Confidence 444333 678885 5668888887653 7
Q ss_pred EEEEEccCCcceeeecCC------CccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCcee----E
Q 001184 523 IKAWLYDNVGSRVDYDAP------GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSA----G 592 (1130)
Q Consensus 523 i~vwd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v----~ 592 (1130)
|++||+.++.....+..+ ...+..++|+|||+++++.......+..|++||+.+++....+..++...+ .
T Consensus 230 l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~ 309 (723)
T 1xfd_A 230 LHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNE 309 (723)
T ss_dssp EEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCC
T ss_pred EEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCC
Confidence 999999887754555543 557899999999998877764434467899999999988776655433333 3
Q ss_pred EEEEcCCCCEEEE--EeCCC------cEEEEe-CCCCce--eEEEeccCCCCCcce-EEEcCCCCEEEEEeCC---CcEE
Q 001184 593 VVQFDTTRNRILA--AGEDN------QIKFWD-MDNVNM--LTSTEAEGGLPSLPR-LRFNKEGNLLVVTTAD---QGIK 657 (1130)
Q Consensus 593 ~~~~~~~~~~l~~--~~~dg------~i~vwd-~~~~~~--~~~~~~~~~~~~i~~-v~~s~~~~~l~~~~~d---g~i~ 657 (1130)
.++|+|+|+.|+. ...++ .|++|| ..++.. ...+... + ..+.. ++|+|||+.|+..+.+ +.++
T Consensus 310 ~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 387 (723)
T 1xfd_A 310 EPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG-D-WDVTKILAYDEKGNKIYFLSTEDLPRRRQ 387 (723)
T ss_dssp CCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS-S-SCEEEEEEEETTTTEEEEEESSSCTTCCE
T ss_pred CceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC-C-eEEEeeeEEcCCCCEEEEEEcCCCCcceE
Confidence 6899999997765 44566 577788 444441 3333321 1 13444 6899999999877665 7889
Q ss_pred EEEcCCC
Q 001184 658 ILANADG 664 (1130)
Q Consensus 658 iw~~~~~ 664 (1130)
+|++...
T Consensus 388 l~~~~~~ 394 (723)
T 1xfd_A 388 LYSANTV 394 (723)
T ss_dssp EEEECSS
T ss_pred EEEEeCC
Confidence 9987643
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.6e-21 Score=211.86 Aligned_cols=280 Identities=11% Similarity=0.068 Sum_probs=203.3
Q ss_pred EEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeC-CC
Q 001184 353 MDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFT-KH 431 (1130)
Q Consensus 353 v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~-d~ 431 (1130)
..|.+++++++++++.++.|.+||..+++.... +..+...+ +++|+|||++|++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 457777877889999999999999999987652 23445556 9999999997776665 88
Q ss_pred eEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCC-C--cEEEEe-cCCCeeeEecCCCcCEEEEeecc
Q 001184 432 LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD-K--LIRVWD-LSGRKLFQFEGHEAPVYSVCPHQ 507 (1130)
Q Consensus 432 ~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d-~--~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~ 507 (1130)
.|.+||+.+++.. ...+..+..+..+++|+|||+ +++++..+ + .|.+|| .+++.+..+.. .....+++|+|
T Consensus 63 ~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~sp 137 (331)
T 3u4y_A 63 TLVQIETQLEPPK--VVAIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISP 137 (331)
T ss_dssp EEEEEECSSSSCE--EEEEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECT
T ss_pred eEEEEECCCCcee--EEecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECC
Confidence 9999999998751 224555666666699999999 56655544 3 899999 67777777664 44568898865
Q ss_pred cCCcc-EEEEEecCCc-EEEEEccCCccee----eecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCce--
Q 001184 508 KENIH-FIFSTAVDGK-IKAWLYDNVGSRV----DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL-- 579 (1130)
Q Consensus 508 ~~~~~-~l~s~s~dg~-i~vwd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-- 579 (1130)
+++ ++++...++. |.+|+++...... ........+..++|+|+|++++++.. .++.|.+||+.+++.
T Consensus 138 --dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~~ 212 (331)
T 3u4y_A 138 --NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENIT 212 (331)
T ss_dssp --TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSCE
T ss_pred --CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCcccc
Confidence 445 4455566688 9999988654432 22233456899999999998776653 378999999999988
Q ss_pred -eEEEecccCceeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCce--eEEEecc--CCCC---CcceEEEcCCCCEEEEE
Q 001184 580 -KRTYIGFRKKSAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNM--LTSTEAE--GGLP---SLPRLRFNKEGNLLVVT 650 (1130)
Q Consensus 580 -~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~--~~~~~~~--~~~~---~i~~v~~s~~~~~l~~~ 650 (1130)
+..+... ..+..++|+|+|+++++++ .++.|.+||+.+++. +..+... .... ....++|+|++++|+++
T Consensus 213 ~~~~~~~~--~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~ 290 (331)
T 3u4y_A 213 LLNAVGTN--NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFIS 290 (331)
T ss_dssp EEEEEECS--SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEE
T ss_pred eeeeccCC--CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEe
Confidence 7777643 3567899999999777665 578899999999887 4433322 1111 12458999999988766
Q ss_pred eC-CCcEEEEEcCCC
Q 001184 651 TA-DQGIKILANADG 664 (1130)
Q Consensus 651 ~~-dg~i~iw~~~~~ 664 (1130)
+. ++.|.+|++...
T Consensus 291 ~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 291 ANISRELKVFTISGK 305 (331)
T ss_dssp ETTTTEEEEEETTSC
T ss_pred cCCCCcEEEEEecCC
Confidence 55 569999998765
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.89 E-value=7.9e-22 Score=245.61 Aligned_cols=382 Identities=10% Similarity=0.079 Sum_probs=248.3
Q ss_pred EEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCc--eeEEEEEcCCCCEEEEEeCC---------CcE
Q 001184 544 CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK--SAGVVQFDTTRNRILAAGED---------NQI 612 (1130)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d---------g~i 612 (1130)
+.+++|+|||+++++ +. ++.|++||..+++....+.++... .+..++|+|||++|++++.+ +.+
T Consensus 19 ~~~~~~spdg~~~~~-~~----dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQ----KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCCCCBSSSSCBCCC-CS----SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred ccccEEcCCCcEEEE-eC----CCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeE
Confidence 567899999997765 32 789999999999988777765431 38889999999999998764 788
Q ss_pred EEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccce
Q 001184 613 KFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAV 692 (1130)
Q Consensus 613 ~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1130)
++||+.+++.........+...+..++|||||+.|+.++. +.|++|++.++. ..+....+...+
T Consensus 94 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~-~~~~~~~~~~~~-------------- 157 (723)
T 1xfd_A 94 VLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ-AIRVVSTGKEGV-------------- 157 (723)
T ss_dssp EEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC-CEEEECCCBTTT--------------
T ss_pred EEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc-eEEEecCCCCCc--------------
Confidence 8999999876322222223334789999999999999886 799999987762 111111000000
Q ss_pred eeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEE
Q 001184 693 VTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVAR 772 (1130)
Q Consensus 693 ~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 772 (1130)
+..+ +.-|-.. ..-...+..
T Consensus 158 ---------------------------------------~~~g-----~~~~v~~----------------ee~~~~~~~ 177 (723)
T 1xfd_A 158 ---------------------------------------IYNG-----LSDWLYE----------------EEILKTHIA 177 (723)
T ss_dssp ---------------------------------------EEEE-----ECCHHHH----------------HTTSSSSEE
T ss_pred ---------------------------------------eECc-----ccceeEE----------------EEeccCcce
Confidence 0000 0000000 001234578
Q ss_pred EEEeccCCeEEEeeeC-CeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEE
Q 001184 773 LLYTNSGIGILALWSN-GVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSA 851 (1130)
Q Consensus 773 l~~s~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~ 851 (1130)
++|+|||+.|++++.+ +.+.+|++.... ..+...+..+.++++|.. .
T Consensus 178 ~~~SpDg~~la~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~G~~---~ 225 (723)
T 1xfd_A 178 HWWSPDGTRLAYAAINDSRVPIMELPTYT-----------------------------GSIYPTVKPYHYPKAGSE---N 225 (723)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEECCCS-----------------------------SSSSCCCEEEECCBTTSC---C
T ss_pred EEECCCCCEEEEEEECCCccceEEeeccC-----------------------------CcCCCcceeccCCCCCCC---C
Confidence 9999999999988764 456666543210 012234678888888863 1
Q ss_pred eCCeEEEEECCCceeEEEEeCC------CCCeEEEEEeCCCCcEEEEEeC----CCcEEEEEeecCeEEEEEecC-CCCe
Q 001184 852 GGGKVSLFNMMNFKVMTTFMSP------PPASTFLAFHPQDNNIIAIGME----DSTIQIYNVRVDEVKTKLKGH-QKHI 920 (1130)
Q Consensus 852 ~dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~sp~~~~~lasg~~----dg~v~iwd~~~~~~~~~l~~h-~~~V 920 (1130)
.+..|++||+.+++....+..+ ...+..++|+| |+++|++... +..|++||+.++++...+..+ .+.+
T Consensus 226 ~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~ 304 (723)
T 1xfd_A 226 PSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWL 304 (723)
T ss_dssp CEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCC
T ss_pred CeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEE
Confidence 2457999999998876666654 56789999999 8888876653 357999999999877766543 3444
Q ss_pred e----EEEEccCCCeEEEE--eCCC------cEEEEE-CCCCcccceeeEeccCCCCCCCeEE-EEEcCCCcEEEE-EcC
Q 001184 921 T----GLAFSTNLNILVSS--GSDA------QLIFWN-TDTWEKRKSIAIQLPAGKLPVGETR-VQFHSDQVRLLV-NHE 985 (1130)
Q Consensus 921 ~----~l~~s~dg~~L~s~--s~Dg------~i~vwd-~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~d~~~l~~-~~d 985 (1130)
. .++|+|||++|+.. ..++ .|.+|| ..+++... ...+..++ ..+.. ++|+|||+.|+. +.+
T Consensus 305 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~--~~~l~~~~--~~~~~~~~~spdg~~l~~~~~~ 380 (723)
T 1xfd_A 305 HRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDN--IQSITSGD--WDVTKILAYDEKGNKIYFLSTE 380 (723)
T ss_dssp CCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCC--CCBSCCSS--SCEEEEEEEETTTTEEEEEESS
T ss_pred eccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccc--eeEeecCC--eEEEeeeEEcCCCCEEEEEEcC
Confidence 3 78999999988754 4566 466777 34432000 01111111 23443 699999999876 443
Q ss_pred ---CcEEEEECCCce--eeeeeecCCCCCCCeEEEEECCCCCEEEEEeCC-C--cEEEEeCCCccc
Q 001184 986 ---TQLAIYDGSKME--CIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-G--SIGVFDADSLRL 1043 (1130)
Q Consensus 986 ---~~i~v~d~~~~~--~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D-g--~i~vwd~~~~~~ 1043 (1130)
+.+++|++.... ....+.....+...+..++|||||++|+..... + ...+++..++..
T Consensus 381 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~ 446 (723)
T 1xfd_A 381 DLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKK 446 (723)
T ss_dssp SCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCE
T ss_pred CCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCE
Confidence 778999986432 233333211135678899999999988876532 2 234456555443
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-20 Score=210.63 Aligned_cols=276 Identities=9% Similarity=0.092 Sum_probs=212.0
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeC------cCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEE
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCG------DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 417 (1130)
......+..++|+|+|++++++... ++.|.+||..+++.+.. +. ....+..++|
T Consensus 37 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-------------------~~-~~~~~~~~~~ 96 (353)
T 3vgz_A 37 KAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA-------------------IH-NDLKPFGATI 96 (353)
T ss_dssp EEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE-------------------EE-ESSCCCSEEE
T ss_pred hhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE-------------------Ee-cCCCcceEEE
Confidence 4456789999999999975444433 67899999999887652 11 1234678999
Q ss_pred cCCCCEEEEE-eCCCeEEEEEecCCccceeeeeeecCCC---------CeeEEEEecCCCceEEEEE-cCCCcEEEEe-c
Q 001184 418 SPDGNFIGVA-FTKHLIHLYTYQGSNDLCQSLEIDAHVG---------GVNDLAFSYPNKQLCIVTC-GDDKLIRVWD-L 485 (1130)
Q Consensus 418 spdg~~las~-~~d~~i~vwd~~~~~~~~~~~~~~~h~~---------~V~~i~~s~d~~~l~l~s~-s~d~~v~iwd-~ 485 (1130)
+|||++++++ ..++.|.+||..+++.+. .+..+.. .+.+++|+|+|+.+ ++++ +.++.|.+|| .
T Consensus 97 s~dg~~l~v~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l-~~~~~~~~~~i~~~d~~ 172 (353)
T 3vgz_A 97 NNTTQTLWFGNTVNSAVTAIDAKTGEVKG---RLVLDDRKRTEEVRPLQPRELVADDATNTV-YISGIGKESVIWVVDGG 172 (353)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTCCEEE---EEESCCCCCCSSCCCCEEEEEEEETTTTEE-EEEEESSSCEEEEEETT
T ss_pred CCCCCEEEEEecCCCEEEEEeCCCCeeEE---EEecCCCccccccCCCCCceEEECCCCCEE-EEEecCCCceEEEEcCC
Confidence 9999966554 557999999999987554 2333322 27899999999952 3333 4688999999 7
Q ss_pred CCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecC----CCccEEEEEEecCCCeEEEeee
Q 001184 486 SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA----PGLWCTTMLYSADGSRLFSCGT 561 (1130)
Q Consensus 486 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~ 561 (1130)
+++.+..+..+...+.+++|++ +++.+++++.++.|.+||..+.+....+.. +...+..++|+|+|++++++..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 250 (353)
T 3vgz_A 173 NIKLKTAIQNTGKMSTGLALDS--EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS 250 (353)
T ss_dssp TTEEEEEECCCCTTCCCCEEET--TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES
T ss_pred CCceEEEecCCCCccceEEECC--CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC
Confidence 7888888775666688888864 557899999999999999998877765554 3446888999999998887763
Q ss_pred cCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeEEEeccCCCCCcceEEE
Q 001184 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRF 640 (1130)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~ 640 (1130)
.++.|.+||..+++.+..+.... ...++|+|+++++++++ .++.|.+||..+++.+..+.... .+..++|
T Consensus 251 ---~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~ 321 (353)
T 3vgz_A 251 ---KAAEVLVVDTRNGNILAKVAAPE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLAL 321 (353)
T ss_dssp ---SSSEEEEEETTTCCEEEEEECSS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEEE
T ss_pred ---CCCEEEEEECCCCcEEEEEEcCC---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEEE
Confidence 36899999999999888877533 24588999999776665 68999999999999888876543 5789999
Q ss_pred cCCCCEEEEEeCCC
Q 001184 641 NKEGNLLVVTTADQ 654 (1130)
Q Consensus 641 s~~~~~l~~~~~dg 654 (1130)
+|+|++++++..++
T Consensus 322 s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 322 SADGKTLYVSVKQK 335 (353)
T ss_dssp CTTSCEEEEEEECC
T ss_pred cCCCCEEEEEEccc
Confidence 99999888776654
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=8.5e-21 Score=235.35 Aligned_cols=237 Identities=9% Similarity=-0.008 Sum_probs=166.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEecCCccc-eeeeeeecCC-----------------CCeeEEEEecCCCceEEEE
Q 001184 412 VSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDL-CQSLEIDAHV-----------------GGVNDLAFSYPNKQLCIVT 473 (1130)
Q Consensus 412 V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~-~~~~~~~~h~-----------------~~V~~i~~s~d~~~l~l~s 473 (1130)
+..+.|+ |+.+++++.|+ | +||+.+++.+ .. +..|. ..|.+++|+|| +. ++++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~---l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~-~~~~ 98 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTT---RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GL-VVLF 98 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CE---EEEHHHHHTTC-----------CCCEEEEETTT-TE-EEEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEE---eechhHhhhhccchhccccccccCceeEEECCC-Ce-EEEE
Confidence 4557888 66777777788 8 9999998752 32 22222 56999999999 52 3444
Q ss_pred EcCCCcEEEEecCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccC-----CcceeeecCCCcc-----
Q 001184 474 CGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN-----VGSRVDYDAPGLW----- 543 (1130)
Q Consensus 474 ~s~d~~v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-----~~~~~~~~~~~~~----- 543 (1130)
.++.|++||..+.....+..+...+.+++|+| +|+.|+++ .|+.|++||+.+ ++...........
T Consensus 99 --~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~Sp--dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 173 (706)
T 2z3z_A 99 --TQGGLVGFDMLARKVTYLFDTNEETASLDFSP--VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQ 173 (706)
T ss_dssp --ETTEEEEEETTTTEEEEEECCTTCCTTCEECT--TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESS
T ss_pred --ECCEEEEEECCCCceEEccCCcccccCCcCCC--CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEccc
Confidence 35999999954455556666777888888865 56788874 789999999987 6555433333222
Q ss_pred ---------EEEEEEecCCCeEEEeeec-----------------------------CCCCcEEEEeeCCCCceeEEEec
Q 001184 544 ---------CTTMLYSADGSRLFSCGTS-----------------------------KEGDSHLVEWNESEGALKRTYIG 585 (1130)
Q Consensus 544 ---------v~~~~~s~~~~~l~~~~~~-----------------------------~~~~~~i~~wd~~~~~~~~~~~~ 585 (1130)
+.+++|+|||++|++++.+ ...+..|++||+.+++.......
T Consensus 174 ~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 253 (706)
T 2z3z_A 174 AVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG 253 (706)
T ss_dssp CCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC
T ss_pred chhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC
Confidence 4789999999999998632 11357899999998876554432
Q ss_pred -ccCceeEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCceeEEEeccCCC---CCcceEEEcC--CCCEEEEEeCCC
Q 001184 586 -FRKKSAGVVQFDTTRNRILAAGEDN-----QIKFWDMDNVNMLTSTEAEGGL---PSLPRLRFNK--EGNLLVVTTADQ 654 (1130)
Q Consensus 586 -~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~---~~i~~v~~s~--~~~~l~~~~~dg 654 (1130)
.+...+..++|+|+|++|++++.++ .|++||+.+++....+...... ..+..++|+| ||++++++..++
T Consensus 254 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g 333 (706)
T 2z3z_A 254 EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG 333 (706)
T ss_dssp SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCC
Confidence 2334688999999999999988775 8999999998443333222111 1346789999 999999998899
Q ss_pred cEEEEEcC
Q 001184 655 GIKILANA 662 (1130)
Q Consensus 655 ~i~iw~~~ 662 (1130)
.+++|.++
T Consensus 334 ~~~l~~~~ 341 (706)
T 2z3z_A 334 WNHLYLYD 341 (706)
T ss_dssp SCEEEEEE
T ss_pred ccEEEEEE
Confidence 88888764
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-20 Score=208.05 Aligned_cols=290 Identities=11% Similarity=0.039 Sum_probs=199.9
Q ss_pred EEeccCCe-EEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe
Q 001184 774 LYTNSGIG-ILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG 852 (1130)
Q Consensus 774 ~~s~~g~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~ 852 (1130)
.|.+++.. +++...++.|.+||... ++...... .+...+ +++|+|||+++++++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~----------------------~~~~~~~~--~~~~~~-~~~~s~dg~~l~~~~ 58 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDT----------------------LEILNQIT--LGYDFV-DTAITSDCSNVVVTS 58 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTT----------------------CCEEEEEE--CCCCEE-EEEECSSSCEEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcc----------------------cceeeeEE--ccCCcc-eEEEcCCCCEEEEEe
Confidence 34555555 45556688998887543 32222111 134445 999999999777665
Q ss_pred --CCeEEEEECCCcee-EEEEeCCCCCeEEEEEeCCCCcEEEEEeCCC---cEEEEEeecCeEEEEEecCCCCeeEEEEc
Q 001184 853 --GGKVSLFNMMNFKV-MTTFMSPPPASTFLAFHPQDNNIIAIGMEDS---TIQIYNVRVDEVKTKLKGHQKHITGLAFS 926 (1130)
Q Consensus 853 --dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg---~v~iwd~~~~~~~~~l~~h~~~V~~l~~s 926 (1130)
++.|.+||+.+++. ...+..+.....+++|+| ++++|+++..++ .|++||+.+++.+..+..+ ....+++|+
T Consensus 59 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s 136 (331)
T 3u4y_A 59 DFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS 136 (331)
T ss_dssp STTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred CCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence 68999999999988 777776666666699999 788888665553 8999999999988887754 446899999
Q ss_pred cCCCeEEEE-eCCCc-EEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE--cCCcEEEEECCCcee---e
Q 001184 927 TNLNILVSS-GSDAQ-LIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN--HETQLAIYDGSKMEC---I 999 (1130)
Q Consensus 927 ~dg~~L~s~-s~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~--~d~~i~v~d~~~~~~---~ 999 (1130)
|||++|+++ ..++. |.+|++.............. ........++|+|||++++++ .++.|.+||+.+++. +
T Consensus 137 pdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~ 214 (331)
T 3u4y_A 137 PNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI--SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLL 214 (331)
T ss_dssp TTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE--CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEE
T ss_pred CCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc--cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccccee
Confidence 999866655 45588 99999986443222111111 112457899999999977663 478999999999888 6
Q ss_pred eeeecCCCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEeCCCccc--ccccCCCcccccCCCCCcee-eeEEEEEcCCCC
Q 001184 1000 RQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRL--RCRIAPSAYMSQASPNSQTV-FPLVVTSHPQEP 1075 (1130)
Q Consensus 1000 ~~~~~~~~~~~~v~~v~~s~dg~~l~t~~-~Dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 1075 (1130)
..+... ..+..++|+|||++|++++ .++.|.+||+.+++. +..+...... +.... ....++|+|+ +
T Consensus 215 ~~~~~~----~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~spd-g 284 (331)
T 3u4y_A 215 NAVGTN----NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLI-----DPRPLFGANQMALNKT-E 284 (331)
T ss_dssp EEEECS----SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCC-----CCGGGTTCCCEEECTT-S
T ss_pred eeccCC----CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccccccc-----CCCCcccccceEECCC-C
Confidence 666543 5678999999999777665 478899999999887 2222211000 00101 1134788995 5
Q ss_pred CEE-EEEeCCCcEEEEeCCCCccCCccc
Q 001184 1076 NQL-AVGLTDGSVKVIEPSETERKWGVA 1102 (1130)
Q Consensus 1076 ~~l-~s~~~Dg~v~vW~~~~~~~~w~~~ 1102 (1130)
.+| +++..++.|.+||+.+....+...
T Consensus 285 ~~l~v~~~~~~~v~v~d~~~~~~~~~~~ 312 (331)
T 3u4y_A 285 TKLFISANISRELKVFTISGKVVGYVAG 312 (331)
T ss_dssp SEEEEEETTTTEEEEEETTSCEEEECTT
T ss_pred CEEEEecCCCCcEEEEEecCCcccceec
Confidence 555 555567799999999877655333
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-20 Score=232.72 Aligned_cols=282 Identities=9% Similarity=0.066 Sum_probs=184.4
Q ss_pred EEEEEEecCCCeEEEEEeCcCeEEEEeCCCCcee-ecccceeeeccccccc--eeeeeecCCCccEEEEEEcCCCCEEEE
Q 001184 350 VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERL-VSKPFKIWDMSNCSMM--LQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1130)
Q Consensus 350 V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~h~~~V~~v~~spdg~~las 426 (1130)
+..+.|+ |+. +++++.|+ | +||+.+|+.+ .. +.+....... ........+...|.+++|||| ++++.
T Consensus 28 ~~~~~w~--g~~-~~~~~~~~-i-~~d~~tg~~~~~~----l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~ 97 (706)
T 2z3z_A 28 VVGLQWM--GDN-YVFIEGDD-L-VFNKANGKSAQTT----RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVL 97 (706)
T ss_dssp CTTCEEE--TTE-EEEEETTE-E-EEEC-------CE----EEEHHHHHTTC-----------CCCEEEEETTT-TEEEE
T ss_pred CCCCcCc--CCe-EEEEeCCc-E-EEECCCCcEeeEE----eechhHhhhhccchhccccccccCceeEEECCC-CeEEE
Confidence 4557788 544 55566677 8 9999998762 10 1110000000 000000112256999999999 66666
Q ss_pred EeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cC-----CCeeeEecCCCcC-
Q 001184 427 AFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LS-----GRKLFQFEGHEAP- 499 (1130)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~-----~~~~~~~~~h~~~- 499 (1130)
+. ++.|++||+.+++.. .+..+...+.+++|||||+ .|+++ .|+.|++|| .+ ++.......+...
T Consensus 98 ~~-~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~SpdG~--~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~ 169 (706)
T 2z3z_A 98 FT-QGGLVGFDMLARKVT----YLFDTNEETASLDFSPVGD--RVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETL 169 (706)
T ss_dssp EE-TTEEEEEETTTTEEE----EEECCTTCCTTCEECTTSS--EEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTE
T ss_pred EE-CCEEEEEECCCCceE----EccCCcccccCCcCCCCCC--EEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCe
Confidence 64 599999999987543 3456777899999999999 56664 689999999 55 6555444444433
Q ss_pred -------------EEEEeecccCCccEEEEEe---------------------------------cCCcEEEEEccCCcc
Q 001184 500 -------------VYSVCPHQKENIHFIFSTA---------------------------------VDGKIKAWLYDNVGS 533 (1130)
Q Consensus 500 -------------v~~~~~~~~~~~~~l~s~s---------------------------------~dg~i~vwd~~~~~~ 533 (1130)
+.+++|+ +|++.|++++ .+..|.+||+.++..
T Consensus 170 ~~g~~~~~ee~~~~~~~~~S--pDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~ 247 (706)
T 2z3z_A 170 VYGQAVHQREFGIEKGTFWS--PKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT 247 (706)
T ss_dssp EESSCCGGGCTTCCCSEEEC--TTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE
T ss_pred EcccchhhhhcCCCceEEEC--CCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce
Confidence 3677775 5668888887 446799999988765
Q ss_pred eeeec--CCCccEEEEEEecCCCeEEEeeecC-CCCcEEEEeeCCCCceeEEEe-cccCc---eeEEEEEcC--CCCEEE
Q 001184 534 RVDYD--APGLWCTTMLYSADGSRLFSCGTSK-EGDSHLVEWNESEGALKRTYI-GFRKK---SAGVVQFDT--TRNRIL 604 (1130)
Q Consensus 534 ~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~-~~~~~i~~wd~~~~~~~~~~~-~~~~~---~v~~~~~~~--~~~~l~ 604 (1130)
..... .+...+.+++|+|||++|++++.+. .....|++||..+++....+. ..... .+..++|+| +|++++
T Consensus 248 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~ 327 (706)
T 2z3z_A 248 VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIW 327 (706)
T ss_dssp EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEE
T ss_pred EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEE
Confidence 44332 3556799999999999999876522 123589999999984433332 22221 235678999 999999
Q ss_pred EEeCCCcEEEEeCC-CCceeEEEeccCCCCCcce-EEEcCCCCEEEEEeCC
Q 001184 605 AAGEDNQIKFWDMD-NVNMLTSTEAEGGLPSLPR-LRFNKEGNLLVVTTAD 653 (1130)
Q Consensus 605 ~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~i~~-v~~s~~~~~l~~~~~d 653 (1130)
+++.|+.+++|+++ ++..+..+..+. ..+.. ++|+|+++.|+.++.+
T Consensus 328 ~~~~~g~~~l~~~~~~~~~~~~l~~~~--~~v~~~~~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 328 QSRRDGWNHLYLYDTTGRLIRQVTKGE--WEVTNFAGFDPKGTRLYFESTE 376 (706)
T ss_dssp EECTTSSCEEEEEETTSCEEEECCCSS--SCEEEEEEECTTSSEEEEEESS
T ss_pred EEccCCccEEEEEECCCCEEEecCCCC--eEEEeeeEEcCCCCEEEEEecC
Confidence 99999999999876 566666665432 24655 7999999988766554
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-20 Score=205.22 Aligned_cols=257 Identities=14% Similarity=0.125 Sum_probs=190.2
Q ss_pred EEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecC-Ccc
Q 001184 365 VGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQG-SND 443 (1130)
Q Consensus 365 sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~-~~~ 443 (1130)
.++.|+.|++||+.+++... +..|...|.+++|+|||++|++++ ++.|++||+.+ ++.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~ 75 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP 75 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred CCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence 34678999999999887653 446788999999999999999987 78999999998 764
Q ss_pred ceeeeeeecC-CCCeeEEEEecCCCceEEEEEc--CCCcEEEEe--cCCCeeeEecCCCcCEEEEeecccCCccEEE-EE
Q 001184 444 LCQSLEIDAH-VGGVNDLAFSYPNKQLCIVTCG--DDKLIRVWD--LSGRKLFQFEGHEAPVYSVCPHQKENIHFIF-ST 517 (1130)
Q Consensus 444 ~~~~~~~~~h-~~~V~~i~~s~d~~~l~l~s~s--~d~~v~iwd--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~ 517 (1130)
.. ...+| ...|.+++|+||++ ++++++ .++..+||. ..+.....+..+. .+..++|++ +++.|+ ++
T Consensus 76 ~~---~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~sp--dg~~l~~~~ 147 (297)
T 2ojh_A 76 EK---VDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSP--DGKSFTYCG 147 (297)
T ss_dssp EE---CCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECT--TSSEEEEEE
T ss_pred eE---eccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECC--CCCEEEEEE
Confidence 43 23344 46789999999999 677776 445566665 4555556665444 488888865 446665 78
Q ss_pred ecCCcEEEEEccCC-cceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC-CCceeEEEecccCceeEEEE
Q 001184 518 AVDGKIKAWLYDNV-GSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES-EGALKRTYIGFRKKSAGVVQ 595 (1130)
Q Consensus 518 s~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~ 595 (1130)
+.++.+++|+++.. .....+..+...+.+++|+|+|+++++++. .++.+.+|++. .+.....+..+. ..+..++
T Consensus 148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~ 223 (297)
T 2ojh_A 148 IRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSS---RTGQMQIWRVRVDGSSVERITDSA-YGDWFPH 223 (297)
T ss_dssp EETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEEC---TTSSCEEEEEETTSSCEEECCCCS-EEEEEEE
T ss_pred CCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEec---CCCCccEEEECCCCCCcEEEecCC-cccCCeE
Confidence 89999999997543 334455666678999999999999887752 14566666654 344555665544 3788899
Q ss_pred EcCCCCEEEEEeCC-----------CcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCC
Q 001184 596 FDTTRNRILAAGED-----------NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQ 654 (1130)
Q Consensus 596 ~~~~~~~l~~~~~d-----------g~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg 654 (1130)
|+|++++|++++.+ +.|++||+.+++.........+...+..++|+|+++.|++++.+.
T Consensus 224 ~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 224 PSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp ECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 99999999988765 569999999887655444333344789999999999998887654
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-19 Score=201.07 Aligned_cols=274 Identities=13% Similarity=0.153 Sum_probs=190.5
Q ss_pred CCeEEEEEeCcCeEEEEeCCC-CceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCC-CeEEEE
Q 001184 359 HHTLLVVGCGDGEITLWDVGL-RERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTK-HLIHLY 436 (1130)
Q Consensus 359 g~~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d-~~i~vw 436 (1130)
+++++++++.|+.|++||+.. ++.... ....|...+.+++|+|||++|++++.+ +.|.+|
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~ 65 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLT------------------QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY 65 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEE------------------EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEe------------------eeEecCCCCceEEECCCCCEEEEeecCCCeEEEE
Confidence 345666668899999999963 332210 122466788999999999999998886 999999
Q ss_pred Eec--CCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEec-CC---CeeeEecCCCcCEEEEeecccCC
Q 001184 437 TYQ--GSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL-SG---RKLFQFEGHEAPVYSVCPHQKEN 510 (1130)
Q Consensus 437 d~~--~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~-~~---~~~~~~~~h~~~v~~~~~~~~~~ 510 (1130)
++. +++ ......+..+. .+.+++|+|+++. +++++..++.|.+||. ++ +.+..+.. ...+.+++|++ +
T Consensus 66 ~~~~~~~~-~~~~~~~~~~~-~~~~~~~s~dg~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~--d 139 (343)
T 1ri6_A 66 RIAPDDGA-LTFAAESALPG-SLTHISTDHQGQF-VFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISP--D 139 (343)
T ss_dssp EECTTTCC-EEEEEEEECSS-CCSEEEECTTSSE-EEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECT--T
T ss_pred EecCCCCc-eeeccccccCC-CCcEEEEcCCCCE-EEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECC--C
Confidence 998 544 22333444444 7899999999994 3445556899999994 33 23334443 34578888865 5
Q ss_pred ccEEEEEe-cCCcEEEEEccC-Cccee----eec-CCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC--CCce--
Q 001184 511 IHFIFSTA-VDGKIKAWLYDN-VGSRV----DYD-APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES--EGAL-- 579 (1130)
Q Consensus 511 ~~~l~s~s-~dg~i~vwd~~~-~~~~~----~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~~-- 579 (1130)
++.+++++ .++.|.+||+.. +.... ... .....+..++|+|+++++++++. .++.|.+|++. +++.
T Consensus 140 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~~ 216 (343)
T 1ri6_A 140 NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIEC 216 (343)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEE
T ss_pred CCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEE
Confidence 56777776 899999999987 33221 222 23446889999999998877652 37899999984 3443
Q ss_pred eEEEeccc-----CceeEEEEEcCCCCEEEEE-eCCCcEEEEeCC--CC--ceeEEEeccCCCCCcceEEEcCCCCEEEE
Q 001184 580 KRTYIGFR-----KKSAGVVQFDTTRNRILAA-GEDNQIKFWDMD--NV--NMLTSTEAEGGLPSLPRLRFNKEGNLLVV 649 (1130)
Q Consensus 580 ~~~~~~~~-----~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~--~~--~~~~~~~~~~~~~~i~~v~~s~~~~~l~~ 649 (1130)
...+.... ...+..++|+|++++++++ ..++.|++||+. ++ +.+..+.... .+..++|+|++++|++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~ 293 (343)
T 1ri6_A 217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLIA 293 (343)
T ss_dssp EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEEE
T ss_pred EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEEE
Confidence 22222111 1245579999999988754 478999999998 33 3344444332 3789999999998888
Q ss_pred Ee-CCCcEEEEEcC
Q 001184 650 TT-ADQGIKILANA 662 (1130)
Q Consensus 650 ~~-~dg~i~iw~~~ 662 (1130)
++ .++.+.+|+++
T Consensus 294 ~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 294 AGQKSHHISVYEIV 307 (343)
T ss_dssp ECTTTCEEEEEEEE
T ss_pred ecCCCCeEEEEEEc
Confidence 87 58999999664
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-19 Score=201.03 Aligned_cols=272 Identities=11% Similarity=0.131 Sum_probs=183.8
Q ss_pred EEEEEecCCcEEEEEccCCc--ceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC--CCce--eEEEecc
Q 001184 513 FIFSTAVDGKIKAWLYDNVG--SRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES--EGAL--KRTYIGF 586 (1130)
Q Consensus 513 ~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~~--~~~~~~~ 586 (1130)
++++++.|+.|++|+++... .......+...+.+++|+|+|++|++++. .++.|.+|++. +++. +..+..+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~ 83 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR---PEFRVLAYRIAPDDGALTFAAESALP 83 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeec---CCCeEEEEEecCCCCceeeccccccC
Confidence 44455789999999996432 22222335557889999999999998874 14899999987 5553 3344432
Q ss_pred cCceeEEEEEcCCCCEEEEEeC-CCcEEEEeCCCC---ceeEEEeccCCCCCcceEEEcCCCCEEEEEe-CCCcEEEEEc
Q 001184 587 RKKSAGVVQFDTTRNRILAAGE-DNQIKFWDMDNV---NMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT-ADQGIKILAN 661 (1130)
Q Consensus 587 ~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~---~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~-~dg~i~iw~~ 661 (1130)
. .+..++|+|+++++++++. ++.|++||+..+ +.+..+.. ...+.+++|+|+++++++++ .++.|.+|++
T Consensus 84 -~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~ 158 (343)
T 1ri6_A 84 -G-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG---LDGCHSANISPDNRTLWVPALKQDRICLFTV 158 (343)
T ss_dssp -S-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC---CTTBCCCEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred -C-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC---CCCceEEEECCCCCEEEEecCCCCEEEEEEe
Confidence 2 6778999999998877765 888999999533 34444332 23588999999999888887 8899999998
Q ss_pred CCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCc
Q 001184 662 ADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKT 741 (1130)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 741 (1130)
.+...... .
T Consensus 159 ~~~~~~~~-~---------------------------------------------------------------------- 167 (343)
T 1ri6_A 159 SDDGHLVA-Q---------------------------------------------------------------------- 167 (343)
T ss_dssp CTTSCEEE-E----------------------------------------------------------------------
T ss_pred cCCCceee-e----------------------------------------------------------------------
Confidence 65200000 0
Q ss_pred cceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCC
Q 001184 742 KPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNG 821 (1130)
Q Consensus 742 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~ 821 (1130)
.. . .+.
T Consensus 168 -----------------------------~~----------------~---~~~-------------------------- 173 (343)
T 1ri6_A 168 -----------------------------DP----------------A---EVT-------------------------- 173 (343)
T ss_dssp -----------------------------EE----------------E---EEE--------------------------
T ss_pred -----------------------------cc----------------c---ccc--------------------------
Confidence 00 0 000
Q ss_pred cceeccCCCCCCCceeEEEEecCCCEEEEEe--CCeEEEEECCC--cee--EEEEeC---C---CCCeEEEEEeCCCCcE
Q 001184 822 LLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMN--FKV--MTTFMS---P---PPASTFLAFHPQDNNI 889 (1130)
Q Consensus 822 ~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~--~~~--~~~~~~---~---~~~i~~l~~sp~~~~~ 889 (1130)
. .....+.+++|+|+|+++++++ ++.|.+|++.. ++. ...... . ...+..++|+| ++++
T Consensus 174 ------~--~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~ 244 (343)
T 1ri6_A 174 ------T--VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DGRH 244 (343)
T ss_dssp ------C--STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TSSE
T ss_pred ------c--CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC-CCCE
Confidence 0 1123455677888887665543 67788888743 332 222221 1 23567899999 6665
Q ss_pred EE-EEeCCCcEEEEEee--c--CeEEEEEecCCCCeeEEEEccCCCeEEEEe-CCCcEEEEECC
Q 001184 890 IA-IGMEDSTIQIYNVR--V--DEVKTKLKGHQKHITGLAFSTNLNILVSSG-SDAQLIFWNTD 947 (1130)
Q Consensus 890 la-sg~~dg~v~iwd~~--~--~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s-~Dg~i~vwd~~ 947 (1130)
|+ ++..++.|++|++. + .+.+..+..+.. +.+++|+|||++|++++ .++.|.+|+++
T Consensus 245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 245 LYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 55 55578999999998 3 355556665555 89999999999998888 58999999665
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-19 Score=201.39 Aligned_cols=198 Identities=13% Similarity=0.113 Sum_probs=153.3
Q ss_pred eEEEEecCCCEEEEE-------------eCCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEE
Q 001184 837 PCVALSKNDSYVMSA-------------GGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYN 903 (1130)
Q Consensus 837 ~~l~~s~dg~~la~~-------------~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd 903 (1130)
.+++|+|||++++++ .++.|.+||+.+++.+..+.. ...+.+++|+| ++++|+++ ++.|++||
T Consensus 85 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d 160 (337)
T 1pby_B 85 FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMD 160 (337)
T ss_dssp TCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEE
T ss_pred cceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEE
Confidence 345666666666655 368999999999988888775 45678899999 77777777 68899999
Q ss_pred eecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCC------------------------cEEEEECCCCcccceeeEec
Q 001184 904 VRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDA------------------------QLIFWNTDTWEKRKSIAIQL 959 (1130)
Q Consensus 904 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg------------------------~i~vwd~~~~~~~~~~~~~~ 959 (1130)
+.+++.+..+..+... ..++|+|||+.|+..+.++ .|.+||+.+++.. .....
T Consensus 161 ~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~- 237 (337)
T 1pby_B 161 PEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVR- 237 (337)
T ss_dssp TTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEE-
T ss_pred CCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecC-
Confidence 9999988887755411 1337899998776555432 4689999987654 22211
Q ss_pred cCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 001184 960 PAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039 (1130)
Q Consensus 960 ~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~ 1039 (1130)
.....+..++|+|||++++++ ++.|.+||+.+++.+..+... ..+.+++|+|||++|++++.++.|++||+.
T Consensus 238 ---~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~ 309 (337)
T 1pby_B 238 ---IMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLP----HSYYSVNVSTDGSTVWLGGALGDLAAYDAE 309 (337)
T ss_dssp ---ECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECS----SCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred ---CCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCC----CceeeEEECCCCCEEEEEcCCCcEEEEECc
Confidence 122467789999999999988 799999999999988877644 467899999999999999999999999999
Q ss_pred CcccccccCC
Q 001184 1040 SLRLRCRIAP 1049 (1130)
Q Consensus 1040 ~~~~~~~~~~ 1049 (1130)
+++.+..+..
T Consensus 310 ~~~~~~~~~~ 319 (337)
T 1pby_B 310 TLEKKGQVDL 319 (337)
T ss_dssp TCCEEEEEEC
T ss_pred CCcEEEEEEc
Confidence 9998877654
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-18 Score=196.64 Aligned_cols=273 Identities=13% Similarity=0.103 Sum_probs=205.3
Q ss_pred ccceEEEEEeccCCeEEEeee-------CCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEE
Q 001184 767 ASKVARLLYTNSGIGILALWS-------NGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCV 839 (1130)
Q Consensus 767 ~~~i~~l~~s~~g~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l 839 (1130)
...+..++++|+|+.+++++. ++.+.+||... ++.....- ....+..+
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~----------------------~~~~~~~~---~~~~~~~~ 94 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVT----------------------LEVTQAIH---NDLKPFGA 94 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTT----------------------CCEEEEEE---ESSCCCSE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC----------------------CeEEEEEe---cCCCcceE
Confidence 356778999999999988774 45677776433 33222111 12346789
Q ss_pred EEecCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCC---------eEEEEEeCCCCcEEEEEe--CCCcEEEEEeec
Q 001184 840 ALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPA---------STFLAFHPQDNNIIAIGM--EDSTIQIYNVRV 906 (1130)
Q Consensus 840 ~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~---------i~~l~~sp~~~~~lasg~--~dg~v~iwd~~~ 906 (1130)
+++|||++++++. ++.|.+||..+++.+..+..+... +.+++|+| +++.+++++ .++.|.+||..+
T Consensus 95 ~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~ 173 (353)
T 3vgz_A 95 TINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGN 173 (353)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTT
T ss_pred EECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCC
Confidence 9999999776665 689999999999998888765432 68899999 666666555 478899999999
Q ss_pred CeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE--c
Q 001184 907 DEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN--H 984 (1130)
Q Consensus 907 ~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~--~ 984 (1130)
++.+..+..+...+.+++|+|||++|++++.++.|.+||+.+++....... ........+..++|+|+|++++++ .
T Consensus 174 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~s~dg~~l~~~~~~ 251 (353)
T 3vgz_A 174 IKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKL--LDDGKEHFFINISLDTARQRAFITDSK 251 (353)
T ss_dssp TEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEEC--CCSSSCCCEEEEEEETTTTEEEEEESS
T ss_pred CceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEc--CCCCCCcccceEEECCCCCEEEEEeCC
Confidence 999988886666789999999999999999999999999998765433222 111123467889999999987774 3
Q ss_pred CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEeCCCcccccccCCCcccccCCCCCcee
Q 001184 985 ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTV 1063 (1130)
Q Consensus 985 d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 1063 (1130)
++.+.+||..+++.+..+.... + ..++|+|||+++++++ .++.|.+||..+++.+..+... .
T Consensus 252 ~~~v~~~d~~~~~~~~~~~~~~----~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~------------~ 314 (353)
T 3vgz_A 252 AAEVLVVDTRNGNILAKVAAPE----S-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP------------T 314 (353)
T ss_dssp SSEEEEEETTTCCEEEEEECSS----C-CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC------------S
T ss_pred CCEEEEEECCCCcEEEEEEcCC----C-ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC------------C
Confidence 5899999999999888877542 2 5699999999766666 6899999999999887766421 1
Q ss_pred eeEEEEEcCCCCCEEEEEeCCC
Q 001184 1064 FPLVVTSHPQEPNQLAVGLTDG 1085 (1130)
Q Consensus 1064 ~~~~~~~~~~~~~~l~s~~~Dg 1085 (1130)
.+..++|+|+ +++|+++..++
T Consensus 315 ~~~~~~~s~d-g~~l~v~~~~~ 335 (353)
T 3vgz_A 315 HPNSLALSAD-GKTLYVSVKQK 335 (353)
T ss_dssp EEEEEEECTT-SCEEEEEEECC
T ss_pred CCCeEEEcCC-CCEEEEEEccc
Confidence 3566889985 66565555553
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-19 Score=197.10 Aligned_cols=255 Identities=10% Similarity=0.068 Sum_probs=189.2
Q ss_pred CCCCCcccccCCcccceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCC-Cceeecccceeeeccccccceee
Q 001184 324 VPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGL-RERLVSKPFKIWDMSNCSMMLQA 402 (1130)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~ 402 (1130)
.++.+.+|.... ++......|...|.+++|+|||++ |++++ ++.|++||+.+ ++...
T Consensus 20 ~~~~i~~~d~~~--~~~~~~~~~~~~v~~~~~spdg~~-l~~~~-~~~i~~~d~~~~~~~~~------------------ 77 (297)
T 2ojh_A 20 MRSSIEIFNIRT--RKMRVVWQTPELFEAPNWSPDGKY-LLLNS-EGLLYRLSLAGDPSPEK------------------ 77 (297)
T ss_dssp CCEEEEEEETTT--TEEEEEEEESSCCEEEEECTTSSE-EEEEE-TTEEEEEESSSCCSCEE------------------
T ss_pred cceeEEEEeCCC--CceeeeccCCcceEeeEECCCCCE-EEEEc-CCeEEEEeCCCCCCceE------------------
Confidence 445566776654 344455668999999999999995 66665 78999999998 76543
Q ss_pred eeecCC-CccEEEEEEcCCCCEEEEEe--CCCeEEEEEec--CCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCC
Q 001184 403 AIVKDS-SISVSRVAWSPDGNFIGVAF--TKHLIHLYTYQ--GSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD 477 (1130)
Q Consensus 403 ~~~~~h-~~~V~~v~~spdg~~las~~--~d~~i~vwd~~--~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d 477 (1130)
+..+| ...|.+++|+|||++|++++ .++.+.||.+. ++. .. .+..+ ..+..++|+||++. ++++++.|
T Consensus 78 -~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~-~~~~~~~~spdg~~-l~~~~~~~ 150 (297)
T 2ojh_A 78 -VDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKN-LPSYWHGWSPDGKS-FTYCGIRD 150 (297)
T ss_dssp -CCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSS-SSEEEEEECTTSSE-EEEEEEET
T ss_pred -eccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecC-CCccceEECCCCCE-EEEEECCC
Confidence 23344 46789999999999999998 44556666654 433 22 23333 34899999999994 34478889
Q ss_pred CcEEEEe--cCCCeeeEecCCCcCEEEEeecccCCccEEEEEe-cCCcEEEEEcc-CCcceeeecCCCccEEEEEEecCC
Q 001184 478 KLIRVWD--LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA-VDGKIKAWLYD-NVGSRVDYDAPGLWCTTMLYSADG 553 (1130)
Q Consensus 478 ~~v~iwd--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~s~~~ 553 (1130)
+.++||+ ..+.....+..|...+.+++|++ ++..|+.++ .++.+++|+++ .......+..+...+..++|+|+|
T Consensus 151 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 228 (297)
T 2ojh_A 151 QVFDIYSMDIDSGVETRLTHGEGRNDGPDYSP--DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSG 228 (297)
T ss_dssp TEEEEEEEETTTCCEEECCCSSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTS
T ss_pred CceEEEEEECCCCcceEcccCCCccccceECC--CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCC
Confidence 9999999 55666777888889999999965 456666655 59999999987 455556666677789999999999
Q ss_pred CeEEEeeecCC-------CCcEEEEeeCCCCceeEEE--ecccCceeEEEEEcCCCCEEEEEeCCC
Q 001184 554 SRLFSCGTSKE-------GDSHLVEWNESEGALKRTY--IGFRKKSAGVVQFDTTRNRILAAGEDN 610 (1130)
Q Consensus 554 ~~l~~~~~~~~-------~~~~i~~wd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg 610 (1130)
++|++++.+.. ....|++||+.+++..... .++.. .+..++|+|++++|++++.+.
T Consensus 229 ~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 229 DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQG-TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTT-TSCSCCBCTTSSEEEEEEECC
T ss_pred CEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCc-ccccceECCCCCEEEEEEecc
Confidence 99998875321 2367999999988764433 34433 678899999999998887654
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.2e-19 Score=199.16 Aligned_cols=268 Identities=9% Similarity=0.041 Sum_probs=197.3
Q ss_pred EEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCc-cEEEEEEcCCCCEEE-EEeCCCeEEEEEec
Q 001184 362 LLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSI-SVSRVAWSPDGNFIG-VAFTKHLIHLYTYQ 439 (1130)
Q Consensus 362 llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~v~~spdg~~la-s~~~d~~i~vwd~~ 439 (1130)
++++++.++.|.+||+.+++.+.. +..++.. .+.+++|+|||++++ +++.++.|.+||+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~------------------~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 64 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKV------------------ITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEE------------------EECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCCCeEEEEECCCCcEEEE------------------EEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence 688999999999999999887642 1112222 478899999998765 55567899999999
Q ss_pred CCccceeeeeeec---CCCCeeEEEEecCCCceEEEEEc------------CCCcEEEEe-cCCCeeeEecCCCcCEEEE
Q 001184 440 GSNDLCQSLEIDA---HVGGVNDLAFSYPNKQLCIVTCG------------DDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1130)
Q Consensus 440 ~~~~~~~~~~~~~---h~~~V~~i~~s~d~~~l~l~s~s------------~d~~v~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1130)
+++.+... .... |...+.+++|+|||+ .+++++ .++.|.+|| .+++.+..+.. ...+.++
T Consensus 65 ~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 65 TGETLGRI-DLSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML 140 (337)
T ss_dssp TCCEEEEE-ECCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred CCCeEeeE-EcCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence 88755422 1111 223678999999999 556554 579999999 66666666654 4557778
Q ss_pred eecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCc----------------
Q 001184 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDS---------------- 567 (1130)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~---------------- 567 (1130)
+|++ ++++|+++ ++.|.+||+.+.+....+..... ...+.|+|+++.++..+.. ++
T Consensus 141 ~~s~--dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~---~~~~~~~~~~~~~~~~~~ 212 (337)
T 1pby_B 141 AWAR--DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHES---SGVMATPFYTARKDIDPA 212 (337)
T ss_dssp EECT--TSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTT---TTEEEEEEEEEBTTSCTT
T ss_pred EECC--CCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccC---CCceeeeeeccccccccc
Confidence 8854 55667776 68999999998876665554331 1123789999877655421 11
Q ss_pred -------EEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEE
Q 001184 568 -------HLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRF 640 (1130)
Q Consensus 568 -------~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~ 640 (1130)
.|.+||..+++....-.......+..++|+|++++++++ ++.|++||+.+++.+..+.... .+.+++|
T Consensus 213 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~ 287 (337)
T 1pby_B 213 DPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVNV 287 (337)
T ss_dssp SGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEEE
T ss_pred cccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC---ceeeEEE
Confidence 579999999887522122222356789999999999888 6999999999998888776543 5789999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 641 NKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 641 s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+|++++|++++.++.|.+||+.++
T Consensus 288 s~dg~~l~~~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 288 STDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp CTTSCEEEEESBSSEEEEEETTTC
T ss_pred CCCCCEEEEEcCCCcEEEEECcCC
Confidence 999999999999999999999877
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-19 Score=218.39 Aligned_cols=272 Identities=11% Similarity=0.040 Sum_probs=193.4
Q ss_pred CCCEEEEEEecCCCeEEEEEeC-cCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCG-DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
..+|++++|||||++ ||+++. ||+++||++.+++... +...+...|.+++|||| +.++
T Consensus 21 ~~~~~~~~~~~DG~~-la~~s~~~g~~~lw~~~~g~~~~-------------------lt~~~~~~~~~~~~spd-~~l~ 79 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDK-LLVVGFSEGSVNAYLYDGGETVK-------------------LNREPINSVLDPHYGVG-RVIL 79 (582)
T ss_dssp HSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTEEEE-------------------CCSSCCSEECEECTTCS-EEEE
T ss_pred ccchheeecCCCCCe-EEEEEccCCceeEEEEcCCCcEe-------------------eecccccccccccCCCC-eEEE
Confidence 457999999999996 666555 9999999997766543 22333468999999999 7777
Q ss_pred EEeC---CCeEEEEEecC--CccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcC
Q 001184 426 VAFT---KHLIHLYTYQG--SNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAP 499 (1130)
Q Consensus 426 s~~~---d~~i~vwd~~~--~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~ 499 (1130)
+++. +....+|.+.. ..... .+..+ ..+...+|+|||+.+++++++.|+. .+|| .+++. ..+..+..
T Consensus 80 ~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~-~l~d~~~g~~-~~l~~~~~- 152 (582)
T 3o4h_A 80 VRDVSKGAEQHALFKVNTSRPGEEQ---RLEAV-KPMRILSGVDTGEAVVFTGATEDRV-ALYALDGGGL-RELARLPG- 152 (582)
T ss_dssp EEECSTTSCCEEEEEEETTSTTCCE---ECTTS-CSBEEEEEEECSSCEEEEEECSSCE-EEEEEETTEE-EEEEEESS-
T ss_pred EeccCCCCcceEEEEEeccCCCccc---cccCC-CCceeeeeCCCCCeEEEEecCCCCc-eEEEccCCcE-EEeecCCC-
Confidence 7765 45567776654 22122 22222 2345679999998756666665554 4999 55544 44433333
Q ss_pred EEEEeecccCCccEEEEEecC----CcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC
Q 001184 500 VYSVCPHQKENIHFIFSTAVD----GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1130)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1130)
.+++|+| ||+.|++++.+ +.|++||+.+++.. .+..+...+..++|+|||+.|+++.. ++...|++||+.
T Consensus 153 -~~~~~sp--DG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~~ 226 (582)
T 3o4h_A 153 -FGFVSDI--RGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDPR 226 (582)
T ss_dssp -CEEEEEE--ETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECTT
T ss_pred -ceEEECC--CCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcCC
Confidence 6777754 66899988877 78999999876654 56667778999999999999995432 233499999999
Q ss_pred CCceeEEEecccCceeEEEE--------EcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEE
Q 001184 576 EGALKRTYIGFRKKSAGVVQ--------FDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLL 647 (1130)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l 647 (1130)
+++.. .+.++.. .+..++ |+|||..+++++.|+.+++|++ ++.... .. ..+.+++|+ +++++
T Consensus 227 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~~--~~v~~~~~s-dg~~l 296 (582)
T 3o4h_A 227 DGSVE-DLELPSK-DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---PQ--GNHGRVVLW-RGKLV 296 (582)
T ss_dssp TCCEE-ECCCSCS-HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---CS--SEEEEEEEE-TTEEE
T ss_pred CCcEE-EccCCCc-ChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---CC--CceEEEEec-CCEEE
Confidence 98877 5555433 444455 9999988899999999999999 655431 11 357899999 99999
Q ss_pred EEEeCCCc---EEEEEcC
Q 001184 648 VVTTADQG---IKILANA 662 (1130)
Q Consensus 648 ~~~~~dg~---i~iw~~~ 662 (1130)
++++.+.. +.+|+..
T Consensus 297 ~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 297 TSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEEETTEEEEEEEETTC
T ss_pred EEEcCCCCCCeEEEEcCC
Confidence 88877754 5555543
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-19 Score=223.63 Aligned_cols=276 Identities=12% Similarity=0.074 Sum_probs=188.0
Q ss_pred EEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCc---cEEEEEEcCCCCEEEEEe
Q 001184 352 SMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSI---SVSRVAWSPDGNFIGVAF 428 (1130)
Q Consensus 352 ~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~v~~spdg~~las~~ 428 (1130)
+++|+|||+ +++++ .|++|++||+.+++... ++.+|.. .|.+++|||||++||+++
T Consensus 20 ~~~~s~dg~-~~~~~-~d~~i~~~~~~~g~~~~-------------------~~~~~~~~~~~~~~~~~SpDg~~la~~~ 78 (719)
T 1z68_A 20 FPNWISGQE-YLHQS-ADNNIVLYNIETGQSYT-------------------ILSNRTMKSVNASNYGLSPDRQFVYLES 78 (719)
T ss_dssp CCEESSSSE-EEEEC-TTSCEEEEESSSCCEEE-------------------EECHHHHHTTTCSEEEECTTSSEEEEEE
T ss_pred ccEECCCCe-EEEEc-CCCCEEEEEcCCCcEEE-------------------EEccccccccceeeEEECCCCCeEEEEe
Confidence 679999995 56554 69999999999988654 2333333 488999999999999987
Q ss_pred C---------CCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEe-cCCC
Q 001184 429 T---------KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQF-EGHE 497 (1130)
Q Consensus 429 ~---------d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~-~~h~ 497 (1130)
. ++.|++||+.+++.+... .+ ...+.+++|||||+ .|+.+. |+.|++|| .+++..... .++.
T Consensus 79 ~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l---~~~~~~~~~SPDG~--~la~~~-~~~i~~~~~~~g~~~~l~~~~~~ 151 (719)
T 1z68_A 79 DYSKLWRYSYTATYYIYDLSNGEFVRGN-EL---PRPIQYLCWSPVGS--KLAYVY-QNNIYLKQRPGDPPFQITFNGRE 151 (719)
T ss_dssp EEEECSSSCEEEEEEEEETTTTEECCSS-CC---CSSBCCEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECCCCCBT
T ss_pred cCceeEEeecceEEEEEECCCCccccce-ec---CcccccceECCCCC--EEEEEE-CCeEEEEeCCCCCcEEEecCCCc
Confidence 6 789999999998752101 12 24689999999999 566664 78999999 555554322 2333
Q ss_pred cCE-----------------EEEeecccCCccEEEEEecCC----------------------------------cEEEE
Q 001184 498 APV-----------------YSVCPHQKENIHFIFSTAVDG----------------------------------KIKAW 526 (1130)
Q Consensus 498 ~~v-----------------~~~~~~~~~~~~~l~s~s~dg----------------------------------~i~vw 526 (1130)
..| .+++|+ +||+.|++++.|. .|++|
T Consensus 152 ~~v~~g~~~~v~~ee~~~~~~~~~wS--PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~ 229 (719)
T 1z68_A 152 NKIFNGIPDWVYEEEMLATKYALWWS--PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFII 229 (719)
T ss_dssp TTEEESSCCHHHHHHTTCSSCCEEEC--TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred CCeEcccccceeeeecccCcccEEEC--CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEE
Confidence 323 367775 5668899887652 78899
Q ss_pred EccCCcce--ee------ecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEee----CCCCceeEEE----ecccCce
Q 001184 527 LYDNVGSR--VD------YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWN----ESEGALKRTY----IGFRKKS 590 (1130)
Q Consensus 527 d~~~~~~~--~~------~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd----~~~~~~~~~~----~~~~~~~ 590 (1130)
|+.++... .. +..+...+..++|+||++.+++.....+....|++|| ..+++....+ .++.. .
T Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~-~ 308 (719)
T 1z68_A 230 DTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTG-W 308 (719)
T ss_dssp ESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSS-C
T ss_pred ECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCc-e
Confidence 99876642 11 2346678999999999877666543233346799999 8877765544 23332 4
Q ss_pred eE-----EEEEcCCCCEEEE--EeCCC--cEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCC-----CcE
Q 001184 591 AG-----VVQFDTTRNRILA--AGEDN--QIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD-----QGI 656 (1130)
Q Consensus 591 v~-----~~~~~~~~~~l~~--~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~d-----g~i 656 (1130)
+. .+.|+|+|+.++. ...+| .|++||+.+++. ..+..+ ...+..+.++ +++.++..+.+ +..
T Consensus 309 ~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~--~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~ 384 (719)
T 1z68_A 309 AGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSG--KWEAINIFRV-TQDSLFYSSNEFEEYPGRR 384 (719)
T ss_dssp SSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCS--SSCEEEEEEE-CSSEEEEEESCGGGCTTCB
T ss_pred EccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-EecccC--ceEEEEEEEE-eCCEEEEEEecCCCCCceE
Confidence 44 6889999996554 43445 577778877663 333322 2245666666 77777666554 666
Q ss_pred EEEEcC
Q 001184 657 KILANA 662 (1130)
Q Consensus 657 ~iw~~~ 662 (1130)
++|.+.
T Consensus 385 ~l~~~~ 390 (719)
T 1z68_A 385 NIYRIS 390 (719)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 666653
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-18 Score=197.11 Aligned_cols=261 Identities=13% Similarity=0.130 Sum_probs=175.9
Q ss_pred ccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCC
Q 001184 767 ASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDS 846 (1130)
Q Consensus 767 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~ 846 (1130)
...+..+++++++..+++++.++ +++|+......... .......+........ + .+...|.+++|+|+|+
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~----~--~~~~~v~~l~~spdg~ 105 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNK---PGDDPNKIVDKVQGLL----V--PMKFPIHHLALSCDNL 105 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCC---TTCCTTCEEECCCCEE----E--CCSSCEEEEEECTTSC
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcc---cccCcccccccCcccc----c--cCCCcccEEEEcCCCC
Confidence 44678899999999999988887 88876532110000 0000000000000000 1 3567899999999999
Q ss_pred EEE----EEe-CCeEEEEECCCc--------ee---EEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEE
Q 001184 847 YVM----SAG-GGKVSLFNMMNF--------KV---MTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVK 910 (1130)
Q Consensus 847 ~la----~~~-dg~i~iwd~~~~--------~~---~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 910 (1130)
+|+ +++ |+.|+|||+.++ +. +..+.+|...|.+++|+|+++.+|++++.||+|++||+.++..+
T Consensus 106 ~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~ 185 (434)
T 2oit_A 106 TLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV 185 (434)
T ss_dssp EEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE
T ss_pred EEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce
Confidence 999 555 799999998765 22 45556789999999999955899999999999999999999877
Q ss_pred EEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEecc-CCCCCCCeEEEEEcCCCcEEEEE--cCC-
Q 001184 911 TKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLP-AGKLPVGETRVQFHSDQVRLLVN--HET- 986 (1130)
Q Consensus 911 ~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~d~~~l~~~--~d~- 986 (1130)
....+|...|++++|+|+|++|++++.||+|++||+. ++.......... ...+...+.++.|++++.++++. .++
T Consensus 186 ~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 186 CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264 (434)
T ss_dssp EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence 7778899999999999999999999999999999998 332222111111 11123478999999999998762 332
Q ss_pred -----cEEEEECCCce-----eeeeeecC----CCCCCCeEEEEECCCCCEEEEEeC-CCcEEEEeC
Q 001184 987 -----QLAIYDGSKME-----CIRQWVPQ----DVLSSPISSAAYSCNSQLIYATFT-DGSIGVFDA 1038 (1130)
Q Consensus 987 -----~i~v~d~~~~~-----~~~~~~~~----~~~~~~v~~v~~s~dg~~l~t~~~-Dg~i~vwd~ 1038 (1130)
.+++|++...+ ....+... .....+-..+.+-+|.+++++++. .+.|.|...
T Consensus 265 ~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 265 LETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp SSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred cCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 38999997542 11221111 011233344455578887777764 344555543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.2e-18 Score=189.02 Aligned_cols=275 Identities=14% Similarity=0.153 Sum_probs=182.2
Q ss_pred CCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeee---CCeEEeeecCCCCCCCCcccccccccc
Q 001184 738 SDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWS---NGVQKLWKWNRTEQNPSGKATAAVAPQ 814 (1130)
Q Consensus 738 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~ 814 (1130)
++.+.+|.++.... ....+.... +......++|+|+|+ +++++. ++.+.+|++..+...
T Consensus 15 ~~~i~v~~~d~~tg--~~~~~~~~~---~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~------------ 76 (347)
T 3hfq_A 15 SQGIYQGTLDTTAK--TLTNDGLLA---ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH------------ 76 (347)
T ss_dssp CCEEEEEEEETTTT--EEEEEEEEE---ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE------------
T ss_pred CCCEEEEEEcCCCC--eEEEeeeee---ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE------------
Confidence 46688888875322 222211111 345667899999999 666665 588999986432110
Q ss_pred cccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe--CCeEEEEECC-Cc--eeEEEEeCC---------CCCeEEE
Q 001184 815 HWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMM-NF--KVMTTFMSP---------PPASTFL 880 (1130)
Q Consensus 815 ~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~iwd~~-~~--~~~~~~~~~---------~~~i~~l 880 (1130)
.+.. + ..+...+..++|+|||++|++++ ++.|.+|++. ++ +.+..+... ...+.++
T Consensus 77 --------~~~~-~-~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~ 146 (347)
T 3hfq_A 77 --------KLNT-V-VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYT 146 (347)
T ss_dssp --------EEEE-E-EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEE
T ss_pred --------Eeee-e-ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEE
Confidence 0000 0 02455678899999999888876 6899999996 22 333333321 1248899
Q ss_pred EEeCCCCcEEEEEeCCCcEEEEEee-cCeEE--EEEecCC-CCeeEEEEccCCCeEEEE-eCCCcEEEEECCC--Ccccc
Q 001184 881 AFHPQDNNIIAIGMEDSTIQIYNVR-VDEVK--TKLKGHQ-KHITGLAFSTNLNILVSS-GSDAQLIFWNTDT--WEKRK 953 (1130)
Q Consensus 881 ~~sp~~~~~lasg~~dg~v~iwd~~-~~~~~--~~l~~h~-~~V~~l~~s~dg~~L~s~-s~Dg~i~vwd~~~--~~~~~ 953 (1130)
+|+| +++++++...++.|++|++. +++.. ..+..+. ..+..++|+|||++|+++ ..++.|.+|+++. ++...
T Consensus 147 ~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~ 225 (347)
T 3hfq_A 147 DLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQ 225 (347)
T ss_dssp EECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred EECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEE
Confidence 9999 67777777778999999998 55433 2233332 367889999999976664 5688999999885 33211
Q ss_pred eeeEeccCCC--CCCCeEEEEEcCCCcEEEE--EcCCcEEEEECCC---ceeeeeeecCCCCCCCeEEEEECCCCCEEEE
Q 001184 954 SIAIQLPAGK--LPVGETRVQFHSDQVRLLV--NHETQLAIYDGSK---MECIRQWVPQDVLSSPISSAAYSCNSQLIYA 1026 (1130)
Q Consensus 954 ~~~~~~~~~~--~~~~v~~~~~s~d~~~l~~--~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t 1026 (1130)
.......... ....+..++|+|||++|++ ..++.|.+|++.. .+.+..+..+ ...+.+++|+|||++|++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~---~~~~~~~~~spdg~~l~v 302 (347)
T 3hfq_A 226 LGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTE---GDFPRDFDLDPTEAFVVV 302 (347)
T ss_dssp EEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECS---SSCCCEEEECTTSSEEEE
T ss_pred eeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecC---CCCcCeEEECCCCCEEEE
Confidence 1111111111 1135788999999998865 3478999999973 2444444443 456789999999999988
Q ss_pred EeCC-CcEEEE--eCCCcccc
Q 001184 1027 TFTD-GSIGVF--DADSLRLR 1044 (1130)
Q Consensus 1027 ~~~D-g~i~vw--d~~~~~~~ 1044 (1130)
++.+ +.|.+| |..+|++.
T Consensus 303 ~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 303 VNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EETTTTEEEEEEECTTTCCEE
T ss_pred EEcCCCcEEEEEEeCCCCeEE
Confidence 8864 899999 55667654
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-17 Score=191.22 Aligned_cols=293 Identities=11% Similarity=-0.014 Sum_probs=193.2
Q ss_pred cCCCCEEE-----EEEecCCCeEEEEEeCcC--eEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEE
Q 001184 345 HQGSSVVS-----MDFHPFHHTLLVVGCGDG--EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1130)
Q Consensus 345 ~h~~~V~~-----v~fspdg~~llasg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 417 (1130)
.|...+.. .+|||||+++++++..+| .|.+||+.+++... +..++...+..++|
T Consensus 28 ~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~-------------------lt~~~~~~~~~~~~ 88 (388)
T 3pe7_A 28 PPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ-------------------LTEGRGDNTFGGFL 88 (388)
T ss_dssp CTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-------------------CCCSSCBCSSSCEE
T ss_pred CCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-------------------eeeCCCCCccceEE
Confidence 46656666 899999997544444467 48888998887654 34456556667889
Q ss_pred cCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEE--EecCCCceEEEE----------------------
Q 001184 418 SPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLA--FSYPNKQLCIVT---------------------- 473 (1130)
Q Consensus 418 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~--~s~d~~~l~l~s---------------------- 473 (1130)
||||++|++++.++.|++||+.+++... ....+...+.... +++|++ .++.
T Consensus 89 spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T 3pe7_A 89 SPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLTDWKKFHEFYF 163 (388)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCCSHHHHHHHGG
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCcccccccccchhhhhhc
Confidence 9999999999999999999999987443 2344555554444 489998 4543
Q ss_pred EcCCCcEEEEecCCCeeeEecCCCcCEEEEeecccCCccEEEEEecC------CcEEEEEccCCcceeeecCCC-ccEEE
Q 001184 474 CGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD------GKIKAWLYDNVGSRVDYDAPG-LWCTT 546 (1130)
Q Consensus 474 ~s~d~~v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~-~~v~~ 546 (1130)
.+.+..|.+||..+.....+..+...+..++|+|. ++..|+..+.+ ..|.++|.+............ ..+..
T Consensus 164 ~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 242 (388)
T 3pe7_A 164 TKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTH 242 (388)
T ss_dssp GCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEE
T ss_pred cCCcceEEEEECCCCceEEeecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCccccc
Confidence 23457899999443345566667778889988651 55777766653 367777776554433322222 35788
Q ss_pred EEEecCCCeEEEeeecCC-CCcEEEEeeCCCCceeEE--EecccC--ceeEEEEEcCCCCEEEEE---------eCCCcE
Q 001184 547 MLYSADGSRLFSCGTSKE-GDSHLVEWNESEGALKRT--YIGFRK--KSAGVVQFDTTRNRILAA---------GEDNQI 612 (1130)
Q Consensus 547 ~~~s~~~~~l~~~~~~~~-~~~~i~~wd~~~~~~~~~--~~~~~~--~~v~~~~~~~~~~~l~~~---------~~dg~i 612 (1130)
++|+|||+.|+..+.... ....|++||+.+++.... +.++.. .......|+|+|+.|+.. ..+..|
T Consensus 243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i 322 (388)
T 3pe7_A 243 EFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFL 322 (388)
T ss_dssp EEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEE
T ss_pred ceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEE
Confidence 999999998877654221 123599999998875432 222100 001123689999987754 456789
Q ss_pred EEEeCCCCceeEEEeccCCCC--------CcceEEEcCCCCEEEEEe-CCCcEEEEEcC
Q 001184 613 KFWDMDNVNMLTSTEAEGGLP--------SLPRLRFNKEGNLLVVTT-ADQGIKILANA 662 (1130)
Q Consensus 613 ~vwd~~~~~~~~~~~~~~~~~--------~i~~v~~s~~~~~l~~~~-~dg~i~iw~~~ 662 (1130)
++||+.+++............ .+..++|+|||+.|+..+ .+|...||.+.
T Consensus 323 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 323 YVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp EEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred EEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 999999887644333222110 367889999999888766 46777777654
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.9e-18 Score=195.70 Aligned_cols=220 Identities=12% Similarity=0.068 Sum_probs=158.3
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE-
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG- 425 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la- 425 (1130)
...++.++++|++. ++++|+.++ |+||+........... .+... ...........|...|.+++|+|||++||
T Consensus 36 ~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~v~~l~~spdg~~lav 109 (434)
T 2oit_A 36 KERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPG---DDPNK-IVDKVQGLLVPMKFPIHHLALSCDNLTLSA 109 (434)
T ss_dssp CSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTT---CCTTC-EEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred CCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccc---cCccc-ccccCccccccCCCcccEEEEcCCCCEEEE
Confidence 34689999999998 588888887 9998864321100000 00000 00000011224677899999999999999
Q ss_pred ---EEeCCCeEEEEEecCC--------ccceeeeeeecCCCCeeEEEEecC-CCceEEEEEcCCCcEEEEe-cCCCeeeE
Q 001184 426 ---VAFTKHLIHLYTYQGS--------NDLCQSLEIDAHVGGVNDLAFSYP-NKQLCIVTCGDDKLIRVWD-LSGRKLFQ 492 (1130)
Q Consensus 426 ---s~~~d~~i~vwd~~~~--------~~~~~~~~~~~h~~~V~~i~~s~d-~~~l~l~s~s~d~~v~iwd-~~~~~~~~ 492 (1130)
+|+.|+.|+|||+.++ +.+.....+.+|...|.+++|+|+ +. +|++++.||+|++|| .++..+..
T Consensus 110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceee
Confidence 7888999999999765 222234456789999999999998 55 899999999999999 66766667
Q ss_pred ecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCC-------CccEEEEEEecCCCeEEEeeecC--
Q 001184 493 FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP-------GLWCTTMLYSADGSRLFSCGTSK-- 563 (1130)
Q Consensus 493 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~~~-- 563 (1130)
..+|...|.+++|++ ++.+|++|+.||+|++||.+ ......+..+ ...+.++.|++++.++++.+...
T Consensus 188 ~~~~~~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 188 TLPSTVAVTSVCWSP--KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264 (434)
T ss_dssp EECGGGCEEEEEECT--TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred ccCCCCceeEEEEcC--CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence 778999999999976 46899999999999999998 3433333322 23799999999988887655321
Q ss_pred -CCCcEEEEeeCCCC
Q 001184 564 -EGDSHLVEWNESEG 577 (1130)
Q Consensus 564 -~~~~~i~~wd~~~~ 577 (1130)
.....+++|++...
T Consensus 265 ~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 265 LETSPDVVMALLPKK 279 (434)
T ss_dssp SSSCCEEEEEECCCT
T ss_pred cCCCCceEEEEeccC
Confidence 11235899998754
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-17 Score=184.94 Aligned_cols=245 Identities=11% Similarity=0.106 Sum_probs=169.5
Q ss_pred CCCccEEEEEEcCCCCEEEEEeC---CCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEc-CCCcEEE
Q 001184 407 DSSISVSRVAWSPDGNFIGVAFT---KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG-DDKLIRV 482 (1130)
Q Consensus 407 ~h~~~V~~v~~spdg~~las~~~---d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s-~d~~v~i 482 (1130)
.+...+..++|+|||+ |++++. ++.|.+||+.+++ ......+..+...+..++|+|||+ +|++++ .++.|.+
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~-~~~~~~~~~~~~~p~~~a~spdg~--~l~~~~~~~~~v~v 112 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQT-AHKLNTVVAPGTPPAYVAVDEARQ--LVYSANYHKGTAEV 112 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTE-EEEEEEEEEESCCCSEEEEETTTT--EEEEEETTTTEEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCc-EEEeeeeecCCCCCEEEEECCCCC--EEEEEeCCCCEEEE
Confidence 3445678899999999 555544 6899999998765 233334456778899999999999 566655 7899999
Q ss_pred Ee-c-CCCe--eeEecC---------CCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCccee---eecC-CCccEE
Q 001184 483 WD-L-SGRK--LFQFEG---------HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV---DYDA-PGLWCT 545 (1130)
Q Consensus 483 wd-~-~~~~--~~~~~~---------h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~---~~~~-~~~~v~ 545 (1130)
|+ . ++.. +..+.. +...+.+++|+| +++++++...++.|.+|++....... .+.. ....+.
T Consensus 113 ~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp--dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~ 190 (347)
T 3hfq_A 113 MKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP--DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPR 190 (347)
T ss_dssp EEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT--TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEE
T ss_pred EEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC--CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCc
Confidence 99 3 2332 233321 123478888865 44577777778999999998333222 1122 333678
Q ss_pred EEEEecCCCeEEEeeecCCCCcEEEEeeCCC--Cce--eEEEecccC-----ceeEEEEEcCCCCEEEE-EeCCCcEEEE
Q 001184 546 TMLYSADGSRLFSCGTSKEGDSHLVEWNESE--GAL--KRTYIGFRK-----KSAGVVQFDTTRNRILA-AGEDNQIKFW 615 (1130)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--~~~--~~~~~~~~~-----~~v~~~~~~~~~~~l~~-~~~dg~i~vw 615 (1130)
.++|+|||++++++.. .++.|.+|++.. ++. +..+..... ..+..++|+|+|++|++ ...++.|.+|
T Consensus 191 ~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~ 267 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGE---LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVF 267 (347)
T ss_dssp EEEECTTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEE
T ss_pred eEEECCCCCEEEEEeC---CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEE
Confidence 8999999998877653 367899998764 543 223332221 24778999999998754 5568999999
Q ss_pred eCCC-C--ceeEEEeccCCCCCcceEEEcCCCCEEEEEeCC-CcEEEEEcC
Q 001184 616 DMDN-V--NMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD-QGIKILANA 662 (1130)
Q Consensus 616 d~~~-~--~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~d-g~i~iw~~~ 662 (1130)
++.. + +.+..+..++. .+..++|+|+|++|++++.+ +.+.+|+++
T Consensus 268 ~~~~~g~~~~~~~~~~~~~--~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 268 AVTADGHLTLIQQISTEGD--FPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EECGGGCEEEEEEEECSSS--CCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EECCCCcEEEeEEEecCCC--CcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 9973 2 34444443332 57899999999998888765 899999654
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.81 E-value=7.9e-17 Score=181.61 Aligned_cols=178 Identities=11% Similarity=0.110 Sum_probs=121.8
Q ss_pred CCceeEEEEecCCCEEEEEe--CCeEEEEECCCce-------e------EEEEeCCCCCeEEEEEeCCCCcEEEEEe-CC
Q 001184 833 EDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFK-------V------MTTFMSPPPASTFLAFHPQDNNIIAIGM-ED 896 (1130)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~-------~------~~~~~~~~~~i~~l~~sp~~~~~lasg~-~d 896 (1130)
...+.+++|+|||+++++++ ++.|++|++.... . ......+...+..++|+| +++++++++ .+
T Consensus 154 ~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~ 232 (361)
T 3scy_A 154 MPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIG 232 (361)
T ss_dssp SCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTT
T ss_pred CCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCC
Confidence 44577899999999776665 6889999876433 1 111223455688999999 788776666 68
Q ss_pred CcEEEEEeecCeE--EEEEe---cCCCCeeEEEEccCCCeEEEEeCC--CcEEEEECC--CCcccceeeEeccCCCCCCC
Q 001184 897 STIQIYNVRVDEV--KTKLK---GHQKHITGLAFSTNLNILVSSGSD--AQLIFWNTD--TWEKRKSIAIQLPAGKLPVG 967 (1130)
Q Consensus 897 g~v~iwd~~~~~~--~~~l~---~h~~~V~~l~~s~dg~~L~s~s~D--g~i~vwd~~--~~~~~~~~~~~~~~~~~~~~ 967 (1130)
+.|.+|++.+++. +..+. .+.....+++|+|||++|++++.+ +.|.+|+++ +++.... ..... ...
T Consensus 233 ~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~--~~~~~---g~~ 307 (361)
T 3scy_A 233 GTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKV--GYQLT---GIH 307 (361)
T ss_dssp CEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEE--EEEEC---SSC
T ss_pred CeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEe--eEecC---CCC
Confidence 9999999998754 33332 334457899999999999776654 899999996 3332111 11221 246
Q ss_pred eEEEEEcCCCcEEEEE--cCCcEEEE--ECCCceeeeeeecCCCCCCCeEEEEEC
Q 001184 968 ETRVQFHSDQVRLLVN--HETQLAIY--DGSKMECIRQWVPQDVLSSPISSAAYS 1018 (1130)
Q Consensus 968 v~~~~~s~d~~~l~~~--~d~~i~v~--d~~~~~~~~~~~~~~~~~~~v~~v~~s 1018 (1130)
+..++|+|||++|+++ .++.+.+| |..+++....... .+...+.|+.|.
T Consensus 308 ~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~--~~~~~p~~v~~~ 360 (361)
T 3scy_A 308 PRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKD--IKVDKPVCLKFV 360 (361)
T ss_dssp CCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCC--EECSSEEEEEEE
T ss_pred CceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeeccee--eeCCCCeEEEEc
Confidence 7789999999988875 47889996 4556765543211 123568888886
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.2e-18 Score=206.65 Aligned_cols=235 Identities=14% Similarity=0.176 Sum_probs=176.0
Q ss_pred CccEEEEEEcCCCCEEEEEeC-CCeEEEEEecCCccceeeeeeecCC-CCeeEEEEecCCCceEEEEEcC---CCcEEEE
Q 001184 409 SISVSRVAWSPDGNFIGVAFT-KHLIHLYTYQGSNDLCQSLEIDAHV-GGVNDLAFSYPNKQLCIVTCGD---DKLIRVW 483 (1130)
Q Consensus 409 ~~~V~~v~~spdg~~las~~~-d~~i~vwd~~~~~~~~~~~~~~~h~-~~V~~i~~s~d~~~l~l~s~s~---d~~v~iw 483 (1130)
..+|.+++|+|||++||+++. ||+++||++.+++.. .+..|. ..+.+++|+|| + ++++++. +...++|
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~----~lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV----KLNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHALF 93 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE----ECCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE----eeecccccccccccCCCC-e--EEEEeccCCCCcceEEE
Confidence 457999999999999999887 999999999776533 244555 68999999999 5 6776654 5556676
Q ss_pred e--c--CCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEe
Q 001184 484 D--L--SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSC 559 (1130)
Q Consensus 484 d--~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1130)
. . .+... .+..+. .+...+|++++++..+++++.++ +.+||+++++.......+. .+++|+|||++|+++
T Consensus 94 ~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~ 167 (582)
T 3o4h_A 94 KVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLPG---FGFVSDIRGDLIAGL 167 (582)
T ss_dssp EEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEE
T ss_pred EEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEE
Confidence 5 4 55544 443322 34456777777655565555554 4599998876554443332 789999999999988
Q ss_pred eecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCceeEEEeccCCCCCcce
Q 001184 560 GTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDN--QIKFWDMDNVNMLTSTEAEGGLPSLPR 637 (1130)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~i~~ 637 (1130)
+.+..+...|++||+.+++.. .+..+.. .+..++|+|||++|+++..++ .|++||+.+++.. .+..+ ...+..
T Consensus 168 ~~~~~~~~~i~~~d~~~g~~~-~l~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~--~~~~~~ 242 (582)
T 3o4h_A 168 GFFGGGRVSLFTSNLSSGGLR-VFDSGEG-SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP--SKDFSS 242 (582)
T ss_dssp EEEETTEEEEEEEETTTCCCE-EECCSSC-EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS--CSHHHH
T ss_pred EEcCCCCeEEEEEcCCCCCce-EeecCCC-ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC--CcChhh
Confidence 763333378999999888765 5555444 678999999999999888888 8999999998877 44433 225666
Q ss_pred EE--------EcCCCCEEEEEeCCCcEEEEEc
Q 001184 638 LR--------FNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 638 v~--------~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
++ |+|||.++++++.++.+++|++
T Consensus 243 ~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 243 YRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 67 9999999999999999999997
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-17 Score=205.71 Aligned_cols=275 Identities=13% Similarity=0.102 Sum_probs=183.1
Q ss_pred CCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCc-----cEEEEEEcCCCC
Q 001184 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSI-----SVSRVAWSPDGN 422 (1130)
Q Consensus 348 ~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~v~~spdg~ 422 (1130)
....+++|+|||+ +++++ ||+|++||+.+++... ++.+|.. ....++|||||+
T Consensus 17 ~~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~Spdg~ 74 (740)
T 4a5s_A 17 LKLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSV-------------------FLENSTFDEFGHSINDYSISPDGQ 74 (740)
T ss_dssp CCCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEE-------------------EECTTTTTTCCSCCCEEEECTTSS
T ss_pred ccccccEECCCCc-EEEEc--CCcEEEEECCCCceEE-------------------EEechhhhhhcccccceEECCCCC
Confidence 3466899999997 57776 9999999999988653 2344432 234589999999
Q ss_pred EEEEEeCC---------CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeee-
Q 001184 423 FIGVAFTK---------HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLF- 491 (1130)
Q Consensus 423 ~las~~~d---------~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~- 491 (1130)
+|++++.+ +.+.+||+.+++.. .+..|.+.+..++|||||+ .|+.+ .|+.|++|| .++....
T Consensus 75 ~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~----~l~~~~~~~~~~~~SPdG~--~la~~-~~~~i~~~~~~~~~~~~l 147 (740)
T 4a5s_A 75 FILLEYNYVKQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYV-WNNDIYVKIEPNLPSYRI 147 (740)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEE-ETTEEEEESSTTSCCEEC
T ss_pred EEEEEECCeeeEEEccceEEEEEECCCCcEE----EcccCCCcceeeEECCCCC--EEEEE-ECCeEEEEECCCCceEEE
Confidence 99999876 56679999998744 3667788899999999999 56666 478999999 5554332
Q ss_pred EecCCCcCE-----------------EEEeecccCCccEEEEEecCCc-EEEEEccCCcceeeecCCCccEEEEEEecCC
Q 001184 492 QFEGHEAPV-----------------YSVCPHQKENIHFIFSTAVDGK-IKAWLYDNVGSRVDYDAPGLWCTTMLYSADG 553 (1130)
Q Consensus 492 ~~~~h~~~v-----------------~~~~~~~~~~~~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 553 (1130)
+..++...+ ..+.| ++||+.|+.++.|.+ +.+|++....... .+...+..+.+.+.|
T Consensus 148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~w--SpDg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G 222 (740)
T 4a5s_A 148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAG 222 (740)
T ss_dssp CSCCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTT
T ss_pred cCCCCccceecCcccccccchhcCCCcceEE--CCCCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCc
Confidence 222333333 23666 456788888876554 8888764322110 123356677777776
Q ss_pred CeEEEeeecCCCCcEEEEeeCCC---Cc--eeEEEec-----ccCceeEEEEEcCCCCEEEEEeC----CCcEEEEeCCC
Q 001184 554 SRLFSCGTSKEGDSHLVEWNESE---GA--LKRTYIG-----FRKKSAGVVQFDTTRNRILAAGE----DNQIKFWDMDN 619 (1130)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~---~~--~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~----dg~i~vwd~~~ 619 (1130)
.. +....|++||+.+ ++ ....+.. .+...+..++|+|||+.++.... +..|++||+.+
T Consensus 223 ~~--------~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t 294 (740)
T 4a5s_A 223 AV--------NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE 294 (740)
T ss_dssp SC--------CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred Cc--------CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence 43 2245799999998 73 2233332 13446888999999986666432 34799999998
Q ss_pred Cc----ee--EEEeccCCCCCc-----ceEEEcCCCCEEE-EEeC-CC--cEEEEEcCCC
Q 001184 620 VN----ML--TSTEAEGGLPSL-----PRLRFNKEGNLLV-VTTA-DQ--GIKILANADG 664 (1130)
Q Consensus 620 ~~----~~--~~~~~~~~~~~i-----~~v~~s~~~~~l~-~~~~-dg--~i~iw~~~~~ 664 (1130)
++ +. ..+....+...+ ..++|+|||+.++ ..+. +| .|.+|+..++
T Consensus 295 g~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 295 SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred CccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence 87 21 111111122233 3789999999877 6653 34 5666776544
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.81 E-value=8.9e-18 Score=208.22 Aligned_cols=379 Identities=9% Similarity=0.019 Sum_probs=239.4
Q ss_pred EEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCce--e--EEEEEcCCCCEEEEEeCC---------C
Q 001184 544 CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKS--A--GVVQFDTTRNRILAAGED---------N 610 (1130)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~--v--~~~~~~~~~~~l~~~~~d---------g 610 (1130)
..++.|+|||+++++. ++.|++||+.+++....+.++.... + ..+.|||||++|+.++.+ +
T Consensus 19 ~~~~~w~~dg~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCEEECSSSEEEEEE------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccccEECCCCcEEEEc------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 4578999999888874 6799999999999888887765322 2 337899999999998876 5
Q ss_pred cEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhccccccccccccccccccc
Q 001184 611 QIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGS 690 (1130)
Q Consensus 611 ~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1130)
.+++||+.+++... +. .+...+..++|||||+.||.+. ++.|++|++.++.....+..+....+.
T Consensus 93 ~~~~~d~~~~~~~~-l~--~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~----------- 157 (740)
T 4a5s_A 93 SYDIYDLNKRQLIT-EE--RIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIY----------- 157 (740)
T ss_dssp EEEEEETTTTEECC-SS--CCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEE-----------
T ss_pred EEEEEECCCCcEEE-cc--cCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCcccee-----------
Confidence 67799999987653 22 2233689999999999999885 689999998776311100100000000
Q ss_pred ceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccce
Q 001184 691 AVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKV 770 (1130)
Q Consensus 691 ~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i 770 (1130)
.+ +.-|-... ......
T Consensus 158 -------------------------------------------~g-----~~~~v~~e----------------e~~~~~ 173 (740)
T 4a5s_A 158 -------------------------------------------NG-----ITDWVYEE----------------EVFSAY 173 (740)
T ss_dssp -------------------------------------------ES-----BCCHHHHH----------------HTSSSS
T ss_pred -------------------------------------------cC-----cccccccc----------------hhcCCC
Confidence 00 00000000 001233
Q ss_pred EEEEEeccCCeEEEeeeC-CeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEE
Q 001184 771 ARLLYTNSGIGILALWSN-GVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVM 849 (1130)
Q Consensus 771 ~~l~~s~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la 849 (1130)
..+.|||||+.|+....| +.+.+|++...... ..+...+..+.+.+.|...
T Consensus 174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~---------------------------~~~~~~~~~~~yp~~G~~~- 225 (740)
T 4a5s_A 174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE---------------------------SLQYPKTVRVPYPKAGAVN- 225 (740)
T ss_dssp BCEEECTTSSEEEEEEEECTTCCEEEEEECCST---------------------------TCSSCEEEEEECCBTTSCC-
T ss_pred cceEECCCCCEEEEEEEcccCCceEEEEeecCC---------------------------CCCCCcceeecCCCCcCcC-
Confidence 468999999999988765 44777764321100 0134456667777776431
Q ss_pred EEeCCeEEEEECCC---ce--eEEEEe------CCCCCeEEEEEeCCCCcEEEEEeC----CCcEEEEEeecCe----EE
Q 001184 850 SAGGGKVSLFNMMN---FK--VMTTFM------SPPPASTFLAFHPQDNNIIAIGME----DSTIQIYNVRVDE----VK 910 (1130)
Q Consensus 850 ~~~dg~i~iwd~~~---~~--~~~~~~------~~~~~i~~l~~sp~~~~~lasg~~----dg~v~iwd~~~~~----~~ 910 (1130)
...+|++||+.+ ++ ....+. ++...+..++|+| |+++++.... +..|++||+.+++ +.
T Consensus 226 --~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~ 302 (740)
T 4a5s_A 226 --PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCL 302 (740)
T ss_dssp --CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEEC
T ss_pred --CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCcccccee
Confidence 123699999998 73 233343 2667799999999 7876665543 3379999999887 22
Q ss_pred --EEE--ecCCCCee-----EEEEccCCCeEE-EEeC-C--CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCC
Q 001184 911 --TKL--KGHQKHIT-----GLAFSTNLNILV-SSGS-D--AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQ 977 (1130)
Q Consensus 911 --~~l--~~h~~~V~-----~l~~s~dg~~L~-s~s~-D--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 977 (1130)
..+ .+|...|. .++|+|||+.|+ ..+. + ..|++||+.+++.. ++..+. ..+..+. .+|+
T Consensus 303 ~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-----~lT~g~--~~v~~~~-~~d~ 374 (740)
T 4a5s_A 303 VARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-----FITKGT--WEVIGIE-ALTS 374 (740)
T ss_dssp GGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-----ESCCSS--SCEEEEE-EECS
T ss_pred EEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-----ecccCC--EEEEEEE-EEeC
Confidence 122 45665554 789999999887 6654 3 45888998875432 222222 3444443 2446
Q ss_pred cEEEE-EcC-------CcEEEEECCCceeeeeeecC-CCCCCCeEEEEECCCCCEEEEEeCC---CcEEEEeCCCccccc
Q 001184 978 VRLLV-NHE-------TQLAIYDGSKMECIRQWVPQ-DVLSSPISSAAYSCNSQLIYATFTD---GSIGVFDADSLRLRC 1045 (1130)
Q Consensus 978 ~~l~~-~~d-------~~i~v~d~~~~~~~~~~~~~-~~~~~~v~~v~~s~dg~~l~t~~~D---g~i~vwd~~~~~~~~ 1045 (1130)
+.++. +.. ..|+..++..+.....+... ......+..+.|||||++++..... ..+.+++..+++...
T Consensus 375 ~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~ 454 (740)
T 4a5s_A 375 DYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLR 454 (740)
T ss_dssp SEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEE
T ss_pred CEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEE
Confidence 66665 332 24555566554433233221 1113578899999999987766643 468888988776544
Q ss_pred c
Q 001184 1046 R 1046 (1130)
Q Consensus 1046 ~ 1046 (1130)
.
T Consensus 455 ~ 455 (740)
T 4a5s_A 455 V 455 (740)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=6e-19 Score=219.12 Aligned_cols=285 Identities=9% Similarity=0.063 Sum_probs=194.1
Q ss_pred CEEEEEEecCCCeEEEEEeC---------cCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC
Q 001184 349 SVVSMDFHPFHHTLLVVGCG---------DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1130)
Q Consensus 349 ~V~~v~fspdg~~llasg~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 419 (1130)
.|.+++|||||++ |++++. ++.|++||+.+++.+.... + ...+.+++|||
T Consensus 61 ~~~~~~~SpDg~~-la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-----------------l---~~~~~~~~~SP 119 (719)
T 1z68_A 61 NASNYGLSPDRQF-VYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-----------------L---PRPIQYLCWSP 119 (719)
T ss_dssp TCSEEEECTTSSE-EEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-----------------C---CSSBCCEEECS
T ss_pred ceeeEEECCCCCe-EEEEecCceeEEeecceEEEEEECCCCcccccee-----------------c---CcccccceECC
Confidence 4999999999996 666654 6899999999988632100 1 24588899999
Q ss_pred CCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCe-----------------eEEEEecCCCceEEEEEcCCC----
Q 001184 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGV-----------------NDLAFSYPNKQLCIVTCGDDK---- 478 (1130)
Q Consensus 420 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V-----------------~~i~~s~d~~~l~l~s~s~d~---- 478 (1130)
||++||++. ++.|++||+.+++.... ...++...| .+++|||||+ .|++++.|.
T Consensus 120 DG~~la~~~-~~~i~~~~~~~g~~~~l--~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~--~la~~~~d~~~~~ 194 (719)
T 1z68_A 120 VGSKLAYVY-QNNIYLKQRPGDPPFQI--TFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGK--FLAYAEFNDTDIP 194 (719)
T ss_dssp STTCEEEEE-TTEEEEESSTTSCCEEC--CCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSS--EEEEEEEECTTSC
T ss_pred CCCEEEEEE-CCeEEEEeCCCCCcEEE--ecCCCcCCeEcccccceeeeecccCcccEEECCCCC--EEEEEEECCCCCc
Confidence 999999986 78999999998875431 123333322 5899999999 677766542
Q ss_pred ------------------------------cEEEEe-cCCCee--------eEecCCCcCEEEEeecccCCccEEEEEec
Q 001184 479 ------------------------------LIRVWD-LSGRKL--------FQFEGHEAPVYSVCPHQKENIHFIFSTAV 519 (1130)
Q Consensus 479 ------------------------------~v~iwd-~~~~~~--------~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 519 (1130)
.|++|| .+++.. ..+.+|...+.+++|+|+ +.++++...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD--~~~~~~~~~ 272 (719)
T 1z68_A 195 VIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTD--ERVCLQWLK 272 (719)
T ss_dssp EEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSS--SEEEEEEEE
T ss_pred eEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCC--CeEEEEEec
Confidence 788999 444432 224468889999999765 567776543
Q ss_pred CC----cEEEEE----ccCCcceeee----cCCCccEE-----EEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEE
Q 001184 520 DG----KIKAWL----YDNVGSRVDY----DAPGLWCT-----TMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582 (1130)
Q Consensus 520 dg----~i~vwd----~~~~~~~~~~----~~~~~~v~-----~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1130)
.+ .|.+|| ..+++....+ ..+...+. .+.|+|||+.++......++...|++||..+++ ...
T Consensus 273 ~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~ 351 (719)
T 1z68_A 273 RVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQ 351 (719)
T ss_dssp SSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEE
T ss_pred cccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEe
Confidence 32 488888 6665544443 34555555 789999999887754445567789999988776 344
Q ss_pred EecccCceeEEEEEcCCCCEEEEEeCC-----CcEEEEeCCC--Cce-eEEEec--cCCCCCcceEEEcCCCCEEEEEe-
Q 001184 583 YIGFRKKSAGVVQFDTTRNRILAAGED-----NQIKFWDMDN--VNM-LTSTEA--EGGLPSLPRLRFNKEGNLLVVTT- 651 (1130)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~--~~~-~~~~~~--~~~~~~i~~v~~s~~~~~l~~~~- 651 (1130)
+..+.. .+..+.+. +++.++..+.+ +..++|.+.. +.. ...+.. .++...+..+.|+|+++.++..+
T Consensus 352 lt~~~~-~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s 429 (719)
T 1z68_A 352 ITSGKW-EAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCY 429 (719)
T ss_dssp CSCSSS-CEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEEC
T ss_pred cccCce-EEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcC
Confidence 444332 45666666 78877776654 7788887654 321 233321 11223567899999988777543
Q ss_pred CC--CcEEEEEcCCC
Q 001184 652 AD--QGIKILANADG 664 (1130)
Q Consensus 652 ~d--g~i~iw~~~~~ 664 (1130)
.. ..+.+|++.++
T Consensus 430 ~~~~p~~~l~d~~~g 444 (719)
T 1z68_A 430 GPGIPISTLHDGRTD 444 (719)
T ss_dssp CBSSCEEEEECSSSC
T ss_pred CCCCCeEEEEECCCC
Confidence 32 46788988766
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.8e-18 Score=190.65 Aligned_cols=245 Identities=14% Similarity=0.134 Sum_probs=183.4
Q ss_pred EEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCC-CCeEEEEEeCCCCc-EEEEEeCCCcEEEEEeecCeEEEEEe
Q 001184 838 CVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPP-PASTFLAFHPQDNN-IIAIGMEDSTIQIYNVRVDEVKTKLK 914 (1130)
Q Consensus 838 ~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~~~~-~lasg~~dg~v~iwd~~~~~~~~~l~ 914 (1130)
.++++++++++++++ +++|++||..+++.+..+..+. ..+..++|+| +++ +++++..++.|++||+.+++.+..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 356788888888887 8999999999999988887543 2578999999 666 45566678999999999999887776
Q ss_pred cCC------CCeeEEEEccCCCeEEEEeCC------------CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCC
Q 001184 915 GHQ------KHITGLAFSTNLNILVSSGSD------------AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSD 976 (1130)
Q Consensus 915 ~h~------~~V~~l~~s~dg~~L~s~s~D------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 976 (1130)
.+. ..+.+++|+|||++|++++.+ +.|.+||+.+++........ . .+..+.+++|+||
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~---~~~~~~~~~~s~d 158 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-P---MPRQVYLMRAADD 158 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-E---CCSSCCCEEECTT
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec-c---CCCcccceeECCC
Confidence 432 237899999999999998866 89999999886543222111 1 1235778999999
Q ss_pred CcEEEEEcCCcEEEEECCCceeeeeeecCCC-------------------------------------------------
Q 001184 977 QVRLLVNHETQLAIYDGSKMECIRQWVPQDV------------------------------------------------- 1007 (1130)
Q Consensus 977 ~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~------------------------------------------------- 1007 (1130)
|+ +++. ++.+.+||+.+++.+..+.....
T Consensus 159 g~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 236 (349)
T 1jmx_B 159 GS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL 236 (349)
T ss_dssp SC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred Cc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEE
Confidence 99 5543 34499999999887766543310
Q ss_pred ----------------CCCCeEEEEECC-CCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEE
Q 001184 1008 ----------------LSSPISSAAYSC-NSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTS 1070 (1130)
Q Consensus 1008 ----------------~~~~v~~v~~s~-dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1130)
+...+.+++|+| ||++++++ ++.|++||+.+++....+... + .+..++|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~----------~--~~~~~~~ 302 (349)
T 1jmx_B 237 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD----------H--TYYCVAF 302 (349)
T ss_dssp EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS----------S--CCCEEEE
T ss_pred EEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC----------C--CccceEE
Confidence 011456778889 99999988 889999999999877666421 1 1235889
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCCCCccCCccccc
Q 001184 1071 HPQEPNQLAVGLTDGSVKVIEPSETERKWGVAVP 1104 (1130)
Q Consensus 1071 ~~~~~~~l~s~~~Dg~v~vW~~~~~~~~w~~~~p 1104 (1130)
+|+ +.+|++++.++.|.+||+.+++....+..|
T Consensus 303 s~d-g~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 303 DKK-GDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp CSS-SSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred CCC-CCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 985 666777888999999999988876655544
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-17 Score=186.28 Aligned_cols=274 Identities=11% Similarity=0.041 Sum_probs=185.4
Q ss_pred EEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCC-CccEEEEEEcCCCCEEE-EEeC
Q 001184 352 SMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDS-SISVSRVAWSPDGNFIG-VAFT 429 (1130)
Q Consensus 352 ~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~spdg~~la-s~~~ 429 (1130)
.++++++++ ++++++.++.|.+||+.+++.+.. +..+ ...+..++|+|||++++ ++..
T Consensus 4 g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~~~~~~~s~dg~~~~v~~~~ 63 (349)
T 1jmx_B 4 GPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKS-------------------CVMPDKFGPGTAMMAPDNRTAYVLNNH 63 (349)
T ss_dssp CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSSCCSSCEEEECTTSSEEEEEETT
T ss_pred cccccCCCE-EEEEeCCCCeEEEEECCCCcEEEE-------------------EecCCCCCCceeEECCCCCEEEEEeCC
Confidence 456788776 789999999999999999887642 2222 22577899999999665 4556
Q ss_pred CCeEEEEEecCCccceeeeeee-cC-----CCCeeEEEEecCCCceEEEEEcCC------------CcEEEEe-cCCC--
Q 001184 430 KHLIHLYTYQGSNDLCQSLEID-AH-----VGGVNDLAFSYPNKQLCIVTCGDD------------KLIRVWD-LSGR-- 488 (1130)
Q Consensus 430 d~~i~vwd~~~~~~~~~~~~~~-~h-----~~~V~~i~~s~d~~~l~l~s~s~d------------~~v~iwd-~~~~-- 488 (1130)
++.|.+||+.+++.... +. .+ ...+.+++|+|||+ ++++++.+ +.|.+|| .+++
T Consensus 64 ~~~i~~~d~~t~~~~~~---~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 64 YGDIYGIDLDTCKNTFH---ANLSSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp TTEEEEEETTTTEEEEE---EESCCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred CCcEEEEeCCCCcEEEE---EEcccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 89999999998875432 22 22 23478999999999 56766654 8999999 5533
Q ss_pred -eeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCC---------------------c---c
Q 001184 489 -KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG---------------------L---W 543 (1130)
Q Consensus 489 -~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---------------------~---~ 543 (1130)
.+..+. +...+.+++|++ +++ ++.++ +.|.+||..+++....+.... . .
T Consensus 139 ~~~~~~~-~~~~~~~~~~s~--dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (349)
T 1jmx_B 139 KPVRTFP-MPRQVYLMRAAD--DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM 212 (349)
T ss_dssp CCSEEEE-CCSSCCCEEECT--TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred ceeeecc-CCCcccceeECC--CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence 333444 334678888865 446 55544 449999998877665554332 0 2
Q ss_pred EEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCce
Q 001184 544 CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT-TRNRILAAGEDNQIKFWDMDNVNM 622 (1130)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~ 622 (1130)
...+++++++........ ....+..+|..+++....-.......+..++++| ++++++++ ++.|++||+.+++.
T Consensus 213 ~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~ 287 (349)
T 1jmx_B 213 LYTIARFKDDKQDPATAD---LLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKL 287 (349)
T ss_dssp EEEEEEC-------CCCE---EEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEE
T ss_pred eeeeeecCCCcCCccccc---cceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeE
Confidence 345666665532211110 0112333565555432211111333677899999 99999888 88999999999998
Q ss_pred eEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 623 LTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 623 ~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+..+.... .+.+++|+|++++|++++.++.|.+||..++
T Consensus 288 ~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 288 IKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp EEEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred EEEEcCCC---CccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 88776543 4689999999998988888999999999876
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.7e-16 Score=176.06 Aligned_cols=271 Identities=14% Similarity=0.153 Sum_probs=182.7
Q ss_pred EEEEEe----CcCeEEEEeCC--CCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCC----C
Q 001184 362 LLVVGC----GDGEITLWDVG--LRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTK----H 431 (1130)
Q Consensus 362 llasg~----~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d----~ 431 (1130)
.+++|+ .++.|.+|+++ +++.... ... +...+..++|+|||++|++++.+ +
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~-----------------~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~ 75 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPL-----------------SDA--EVANPSYLIPSADGKFVYSVNEFSKDQA 75 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEE-----------------EEE--ECSCCCSEEECTTSSEEEEEECCSSTTC
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEe-----------------ecc--cCCCCceEEECCCCCEEEEEEccCCCCC
Confidence 456664 35689998764 4544321 012 56678889999999999999876 7
Q ss_pred eEEEEEecCC-ccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEe------cC--------
Q 001184 432 LIHLYTYQGS-NDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQF------EG-------- 495 (1130)
Q Consensus 432 ~i~vwd~~~~-~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~------~~-------- 495 (1130)
.|.+|++... ..+........+......+++ +++. ++++...++.|.+|+ .....+..+ .+
T Consensus 76 ~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~ 152 (361)
T 3scy_A 76 AVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQ 152 (361)
T ss_dssp EEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTC
T ss_pred cEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCcccc
Confidence 9999999763 223333344445667778888 7774 445555789999999 333332211 11
Q ss_pred CCcCEEEEeecccCCccEEEEE-ecCCcEEEEEccCCcc------e-------eeecCCCccEEEEEEecCCCeEEEeee
Q 001184 496 HEAPVYSVCPHQKENIHFIFST-AVDGKIKAWLYDNVGS------R-------VDYDAPGLWCTTMLYSADGSRLFSCGT 561 (1130)
Q Consensus 496 h~~~v~~~~~~~~~~~~~l~s~-s~dg~i~vwd~~~~~~------~-------~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1130)
+...+.+++|+| ++++++++ ..++.|.+|+++.... . .........+..++|+|||++++++..
T Consensus 153 ~~~~~~~~~~sp--dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 230 (361)
T 3scy_A 153 TMPHLHCVRITP--DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE 230 (361)
T ss_dssp SSCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred CCCcceEEEECC--CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC
Confidence 123357788865 55655554 4588999999886542 1 122334456789999999998887762
Q ss_pred cCCCCcEEEEeeCCCCcee--EEEeccc--CceeEEEEEcCCCCEEEEEeCC--CcEEEEeCC--CCc--eeEEEeccCC
Q 001184 562 SKEGDSHLVEWNESEGALK--RTYIGFR--KKSAGVVQFDTTRNRILAAGED--NQIKFWDMD--NVN--MLTSTEAEGG 631 (1130)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~--~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d--g~i~vwd~~--~~~--~~~~~~~~~~ 631 (1130)
.++.|.+|++.+++.. ..+.... ......++|+|+|++|+++..+ +.|.+|++. +++ .+..+.. +
T Consensus 231 ---~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g- 305 (361)
T 3scy_A 231 ---IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-G- 305 (361)
T ss_dssp ---TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-S-
T ss_pred ---CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-C-
Confidence 3788999999877542 2232211 1235689999999998776654 899999986 455 3333433 2
Q ss_pred CCCcceEEEcCCCCEEEEEe-CCCcEEEEEcC
Q 001184 632 LPSLPRLRFNKEGNLLVVTT-ADQGIKILANA 662 (1130)
Q Consensus 632 ~~~i~~v~~s~~~~~l~~~~-~dg~i~iw~~~ 662 (1130)
..+..++|+|+|++|++++ .++.|.+|+++
T Consensus 306 -~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 306 -IHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp -SCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred -CCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 2578999999999988887 67899997664
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=8.2e-17 Score=181.40 Aligned_cols=248 Identities=9% Similarity=0.055 Sum_probs=169.2
Q ss_pred CceeEEEEecCCCEEEEEeCCeEEEEECC-CceeEEEEeC-CCCCeEEEEEeCCCCc--EEEEEe-------------CC
Q 001184 834 DVVPCVALSKNDSYVMSAGGGKVSLFNMM-NFKVMTTFMS-PPPASTFLAFHPQDNN--IIAIGM-------------ED 896 (1130)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~dg~i~iwd~~-~~~~~~~~~~-~~~~i~~l~~sp~~~~--~lasg~-------------~d 896 (1130)
..+..++++|||++|++++.+.|.+|++. +++....... ..+...+++|+| +++ ++++++ .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecCC
Confidence 46788999999999988884599999997 7776544331 112356689999 777 455553 68
Q ss_pred CcEEEEEee-cCeEEEEEe----cCCCCeeEEEEccCCCeEEEEeC-CCcEEEEECC-CCcccceeeEeccCCCCCCCeE
Q 001184 897 STIQIYNVR-VDEVKTKLK----GHQKHITGLAFSTNLNILVSSGS-DAQLIFWNTD-TWEKRKSIAIQLPAGKLPVGET 969 (1130)
Q Consensus 897 g~v~iwd~~-~~~~~~~l~----~h~~~V~~l~~s~dg~~L~s~s~-Dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~v~ 969 (1130)
|.+.+|++. +++....+. .+...+.+++|+|||++|++++. ++.|++|+++ +++.........+. +...+.
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~--~g~~p~ 196 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD--PGDHPR 196 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS--TTCCEE
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC--CCCCCC
Confidence 999999997 466554443 25567999999999999887764 6799999998 55532211122111 125688
Q ss_pred EEEEcCCCcEEEEE--cCCcEEEEECC--Cceee---eeeecCC----CCCC------CeEEEE-ECCCCCEEEEEeCC-
Q 001184 970 RVQFHSDQVRLLVN--HETQLAIYDGS--KMECI---RQWVPQD----VLSS------PISSAA-YSCNSQLIYATFTD- 1030 (1130)
Q Consensus 970 ~~~~s~d~~~l~~~--~d~~i~v~d~~--~~~~~---~~~~~~~----~~~~------~v~~v~-~s~dg~~l~t~~~D- 1030 (1130)
.++|+|||+++++. .++.+.+|++. +++.. ..+.... ++.. .+..++ |+|||++|++++.+
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 99999999998874 36789999765 56542 1222111 1122 488999 99999998877643
Q ss_pred C-----cEEEEeCC-Ccccccc---cCCCcccccCCCCCceeeeEEEEEcCC--CCCEEEEEeC-CCcEEEEeCCCC
Q 001184 1031 G-----SIGVFDAD-SLRLRCR---IAPSAYMSQASPNSQTVFPLVVTSHPQ--EPNQLAVGLT-DGSVKVIEPSET 1095 (1130)
Q Consensus 1031 g-----~i~vwd~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~-Dg~v~vW~~~~~ 1095 (1130)
+ .|.+|++. ++++... +.... ..+..++|+|. ++++|++++. +++|.+|++...
T Consensus 277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~-----------~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPT-----------SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEECSS-----------CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCeEEEEEECCCCCEEEeeeeeecCC-----------CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 2 89999996 5654321 11111 01123677784 5788888876 489999998765
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.5e-17 Score=183.95 Aligned_cols=253 Identities=11% Similarity=0.023 Sum_probs=172.7
Q ss_pred ecCCCccEEE-----EEEcCCCCEEEEEeC-CC--eEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcC
Q 001184 405 VKDSSISVSR-----VAWSPDGNFIGVAFT-KH--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD 476 (1130)
Q Consensus 405 ~~~h~~~V~~-----v~~spdg~~las~~~-d~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~ 476 (1130)
+..|...... .+|||||++||+++. ++ .|.+||+.+++... ...++...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 4556655555 899999999999987 66 48888988876443 2345665666789999999 7888888
Q ss_pred CCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEe----------------------cCCcEEEEEccCCcc
Q 001184 477 DKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA----------------------VDGKIKAWLYDNVGS 533 (1130)
Q Consensus 477 d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s----------------------~dg~i~vwd~~~~~~ 533 (1130)
++.|++|| .+++....+..+...+....+..++++..++... .+..|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 89999999 7777666666666656555554466777776432 346799999988754
Q ss_pred eeeecCCCccEEEEEEec-CCCeEEEeeecCC--CCcEEEEeeCCCCceeEEEecccC-ceeEEEEEcCCCCEEEEEeC-
Q 001184 534 RVDYDAPGLWCTTMLYSA-DGSRLFSCGTSKE--GDSHLVEWNESEGALKRTYIGFRK-KSAGVVQFDTTRNRILAAGE- 608 (1130)
Q Consensus 534 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~--~~~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~- 608 (1130)
.. +..+...+..+.|+| ||+.|+.+..... ....|+++|..++... .+..+.. ..+...+|+|+|+.|+..+.
T Consensus 181 ~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (388)
T 3pe7_A 181 TV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYL 258 (388)
T ss_dssp EE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred EE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecC
Confidence 43 334455688999999 9999988764221 1457899998765543 3333332 35677899999997766443
Q ss_pred CC----cEEEEeCCCCceeEEEeccCC--C-CCcceEEEcCCCCEEEEE---------eCCCcEEEEEcCCC
Q 001184 609 DN----QIKFWDMDNVNMLTSTEAEGG--L-PSLPRLRFNKEGNLLVVT---------TADQGIKILANADG 664 (1130)
Q Consensus 609 dg----~i~vwd~~~~~~~~~~~~~~~--~-~~i~~v~~s~~~~~l~~~---------~~dg~i~iw~~~~~ 664 (1130)
++ .|++||+.+++.......... . .....+.|+|||+.|+.. ..+..|.+||+.++
T Consensus 259 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 259 KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 22 399999999875443332210 0 012334799999988764 44568999998765
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.6e-16 Score=176.15 Aligned_cols=249 Identities=8% Similarity=0.038 Sum_probs=171.3
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEEec-CCccceeeeeeecCCCCeeEEEEecCCCceEEEEEc-----------
Q 001184 408 SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQ-GSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG----------- 475 (1130)
Q Consensus 408 h~~~V~~v~~spdg~~las~~~d~~i~vwd~~-~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s----------- 475 (1130)
....+..++|+|||++|++++.+ .|.+|++. +++... ......+ +.+.+++|+|||+.+++++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-eeEeecC-CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence 33467889999999999999888 99999997 765432 1122212 236679999999853355553
Q ss_pred --CCCcEEEEe-c-CCCeeeEec----CCCcCEEEEeecccCCccEEEEEe-cCCcEEEEEcc-CCccee--eec--CCC
Q 001184 476 --DDKLIRVWD-L-SGRKLFQFE----GHEAPVYSVCPHQKENIHFIFSTA-VDGKIKAWLYD-NVGSRV--DYD--APG 541 (1130)
Q Consensus 476 --~d~~v~iwd-~-~~~~~~~~~----~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~vwd~~-~~~~~~--~~~--~~~ 541 (1130)
.++.+.+|+ . +|+....+. .+...+.+++|+| ++++++++. .++.|++|+++ +++... .+. .+.
T Consensus 115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp--dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g 192 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP--TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG 192 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC--CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence 689999999 3 566554443 2556788999865 557777665 46899999998 554322 232 235
Q ss_pred ccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC--CCcee---EEEeccc----C-c-------eeEEEE-EcCCCCEE
Q 001184 542 LWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES--EGALK---RTYIGFR----K-K-------SAGVVQ-FDTTRNRI 603 (1130)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~~~---~~~~~~~----~-~-------~v~~~~-~~~~~~~l 603 (1130)
..+..++|+|||++++++.. .++.|.+|+.. +++.. ..+.... . . .+..++ |+|+|++|
T Consensus 193 ~~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l 269 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALME---AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM 269 (365)
T ss_dssp CCEEEEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred CCCCEeEECCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEE
Confidence 56899999999999988753 25788888654 56543 2222111 1 1 367799 99999998
Q ss_pred EEEeCC-C-----cEEEEeCC-CCceeEEEe-ccCCCCCcceEEEcC---CCCEEEEEeCC-CcEEEEEcCCC
Q 001184 604 LAAGED-N-----QIKFWDMD-NVNMLTSTE-AEGGLPSLPRLRFNK---EGNLLVVTTAD-QGIKILANADG 664 (1130)
Q Consensus 604 ~~~~~d-g-----~i~vwd~~-~~~~~~~~~-~~~~~~~i~~v~~s~---~~~~l~~~~~d-g~i~iw~~~~~ 664 (1130)
++++.+ + .|.+|++. +++...... ..........++|+| +|++|++++.+ +.|.+|+++..
T Consensus 270 ~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 876543 2 89999996 566543221 111122467889999 89999999864 89999998654
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-15 Score=170.23 Aligned_cols=312 Identities=9% Similarity=0.077 Sum_probs=206.9
Q ss_pred CccEEEEEe------cCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeec------CCCCcEEEEeeCCCC
Q 001184 510 NIHFIFSTA------VDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS------KEGDSHLVEWNESEG 577 (1130)
Q Consensus 510 ~~~~l~s~s------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~------~~~~~~i~~wd~~~~ 577 (1130)
++.+++... .|+.|.+||..+++....+.....+ .++|+|||++++++... ++.++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 445555543 4789999999888777666655444 89999999999988631 122578999999999
Q ss_pred ceeEEEeccc-----CceeEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCceeEE-EeccCCCCCcceEEEcCCC-CEEE
Q 001184 578 ALKRTYIGFR-----KKSAGVVQFDTTRNRILAAGE--DNQIKFWDMDNVNMLTS-TEAEGGLPSLPRLRFNKEG-NLLV 648 (1130)
Q Consensus 578 ~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~-~~~~~~~~~i~~v~~s~~~-~~l~ 648 (1130)
+.+..+.... ......++++|+|++++++.. ++.|.+||+.+++.+.. +...+ ...+.+.|++ ..++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFM 167 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEE
Confidence 9888876421 123456899999999999874 58999999999988777 54322 2335667765 6778
Q ss_pred EEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCC
Q 001184 649 VTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGI 728 (1130)
Q Consensus 649 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1130)
+.+.||.+.+|+.....+..... +
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~--~------------------------------------------------------ 191 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQS--R------------------------------------------------------ 191 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEE--E------------------------------------------------------
T ss_pred EECCCCcEEEEEECCCCcEeeec--c------------------------------------------------------
Confidence 88999999999875421111000 0
Q ss_pred CCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccc
Q 001184 729 EKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKAT 808 (1130)
Q Consensus 729 ~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 808 (1130)
...+|+... . ...+.+++++..++..+.++.+.++|+.......
T Consensus 192 -----------~~~~~~~~~-------------------~-~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~----- 235 (361)
T 2oiz_A 192 -----------SKQMFSVKD-------------------D-PIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKV----- 235 (361)
T ss_dssp -----------CCCCSCTTT-------------------S-CBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEE-----
T ss_pred -----------ccceEcCCC-------------------C-ceEEEecccCCEEEEEeCCCeEEEEEecCCCcee-----
Confidence 000011000 0 0011224555556666667777777764321100
Q ss_pred cccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe------------CCeEEEEECCCceeEEEEeCCCCC
Q 001184 809 AAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG------------GGKVSLFNMMNFKVMTTFMSPPPA 876 (1130)
Q Consensus 809 ~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~------------dg~i~iwd~~~~~~~~~~~~~~~~ 876 (1130)
...|............ .......++++||++.+.++. .+.|.+||+.+++.+.++..+.
T Consensus 236 ----~~~~~~~~~~~~~~~~---~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-- 306 (361)
T 2oiz_A 236 ----DGPWSLLNDEDKAKNW---VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-- 306 (361)
T ss_dssp ----EEEEESCCHHHHHTTC---EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--
T ss_pred ----cccccccCcccccccc---ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--
Confidence 0011111100000000 001112378999988877653 2479999999999999998776
Q ss_pred eEEEEEeCCCCcEEEEEeCCCcEEEEEeecC--eEEEEEecCCCCeeEEEEccCCC
Q 001184 877 STFLAFHPQDNNIIAIGMEDSTIQIYNVRVD--EVKTKLKGHQKHITGLAFSTNLN 930 (1130)
Q Consensus 877 i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~--~~~~~l~~h~~~V~~l~~s~dg~ 930 (1130)
+..++|+| ++++|++++. ++|.+||..++ +.+.++..+......++++|||+
T Consensus 307 p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 307 ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999999 7888888877 99999999999 99999877777789999999986
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-16 Score=183.31 Aligned_cols=282 Identities=10% Similarity=-0.024 Sum_probs=183.3
Q ss_pred EEEEEEecCCCeEEEEEeCc--CeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEE
Q 001184 350 VVSMDFHPFHHTLLVVGCGD--GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1130)
Q Consensus 350 V~~v~fspdg~~llasg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 427 (1130)
+.+++|||||++++++...+ ..|.+||+.+++... +..++......+.|||||++|+.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-------------------l~~~~~~~~~~~~~spdg~~l~~~ 98 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-------------------LTEGKGDNTFGGFISTDERAFFYV 98 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-------------------CCCSSCBCTTTCEECTTSSEEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-------------------eecCCCCccccceECCCCCEEEEE
Confidence 77889999999755555443 368888998877543 122222223347899999999999
Q ss_pred eCCCeEEEEEecCCccceeeeeeecCCCCeeE-------------------EEEecCCCceEEEEE-----cCCCcEEEE
Q 001184 428 FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVND-------------------LAFSYPNKQLCIVTC-----GDDKLIRVW 483 (1130)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~-------------------i~~s~d~~~l~l~s~-----s~d~~v~iw 483 (1130)
+.++.|.+||+.+++... ....+...... ++|+|+++. ++.+ ..+..|.+|
T Consensus 99 ~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~--~~~~~~~~~~~~~~l~~~ 173 (396)
T 3c5m_A 99 KNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW--EKFAEFYHTNPTCRLIKV 173 (396)
T ss_dssp ETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH--HHHHHHHHTCCCEEEEEE
T ss_pred EcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCcc--eeeeeeccCCCcceEEEE
Confidence 999999999998876432 12223332222 356777773 3332 467789999
Q ss_pred e-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecC------CcEEEEEccCCcceeeecCC-CccEEEEEEecCCCe
Q 001184 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD------GKIKAWLYDNVGSRVDYDAP-GLWCTTMLYSADGSR 555 (1130)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~ 555 (1130)
| .+++. ..+..+...+..+.|+|. ++..|+..+.+ ..|.+||++........... ...+..++|+|||++
T Consensus 174 d~~~g~~-~~~~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~ 251 (396)
T 3c5m_A 174 DIETGEL-EVIHQDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSA 251 (396)
T ss_dssp ETTTCCE-EEEEEESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSC
T ss_pred ECCCCcE-EeeccCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCE
Confidence 9 55554 444456778888888752 34556555443 35888887655433322221 336888999999999
Q ss_pred EEEeeecC-CCCcEEEEeeCCCCceeEEEecccCceeEEEEEcC-CCCEEEEEe----------------CCCcEEEEeC
Q 001184 556 LFSCGTSK-EGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT-TRNRILAAG----------------EDNQIKFWDM 617 (1130)
Q Consensus 556 l~~~~~~~-~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~----------------~dg~i~vwd~ 617 (1130)
|+.++... ...+.|++||+.+++....... .. .. ..|+| +|+++++++ .++.|++||+
T Consensus 252 l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~--~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 252 MAYVSYFKGQTDRVIYKANPETLENEEVMVM-PP--CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT 327 (396)
T ss_dssp EEEEEEETTTCCEEEEEECTTTCCEEEEEEC-CS--EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred EEEEecCCCCccceEEEEECCCCCeEEeeeC-CC--CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence 88776421 1125599999988876544322 11 23 78999 999888754 3478999999
Q ss_pred CCCceeEEEeccCCC--------CCcceEEEcCCCCEEEEEeC-CCcEEEEEc
Q 001184 618 DNVNMLTSTEAEGGL--------PSLPRLRFNKEGNLLVVTTA-DQGIKILAN 661 (1130)
Q Consensus 618 ~~~~~~~~~~~~~~~--------~~i~~v~~s~~~~~l~~~~~-dg~i~iw~~ 661 (1130)
.+++........... ..+..++|+|+|+.|+.++. ++...+|.+
T Consensus 328 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 328 KAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp TTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 888754333222110 01466899999998887765 455555554
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.4e-16 Score=177.35 Aligned_cols=180 Identities=11% Similarity=0.101 Sum_probs=116.2
Q ss_pred CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCC------CcEEEEEeecCeEEEEEecCC--CCeeEEE
Q 001184 853 GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED------STIQIYNVRVDEVKTKLKGHQ--KHITGLA 924 (1130)
Q Consensus 853 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~d------g~v~iwd~~~~~~~~~l~~h~--~~V~~l~ 924 (1130)
+..|.+||+.+++..... .+...+..+.|+|+++..|+..+.+ ..|++|++.+++.. .+..+. ..+..++
T Consensus 167 ~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~ 244 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEF 244 (396)
T ss_dssp CEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEE
T ss_pred cceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceE
Confidence 346788888877665444 3556788999999445555555443 35888888766543 333332 2578899
Q ss_pred EccCCCeEEEEeCC-----CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcC-CCcEEEEE---------------
Q 001184 925 FSTNLNILVSSGSD-----AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHS-DQVRLLVN--------------- 983 (1130)
Q Consensus 925 ~s~dg~~L~s~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~--------------- 983 (1130)
|+|||++|+.++.+ +.|++||+.+++..... ... ... +.|+| ||++++++
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~--~~~------~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~ 315 (396)
T 3c5m_A 245 WIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVM--VMP------PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYN 315 (396)
T ss_dssp ECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEE--ECC------SEE-EEEECSSSSEEEEEECCC----------C
T ss_pred ECCCCCEEEEEecCCCCccceEEEEECCCCCeEEee--eCC------CCC-CCccCCCCceEEEecCCcceeeccccccc
Confidence 99999988877654 44999999886542211 111 122 88999 99988863
Q ss_pred --cCCcEEEEECCCceeeeeeecCCCC--------CCCeEEEEECCCCCEEEEEeC-CCc--EEEEeCCCcccc
Q 001184 984 --HETQLAIYDGSKMECIRQWVPQDVL--------SSPISSAAYSCNSQLIYATFT-DGS--IGVFDADSLRLR 1044 (1130)
Q Consensus 984 --~d~~i~v~d~~~~~~~~~~~~~~~~--------~~~v~~v~~s~dg~~l~t~~~-Dg~--i~vwd~~~~~~~ 1044 (1130)
.+..|++||+.+++.. .+..+... ...+..++|+|||+.|+.++. ++. |+++++.+++..
T Consensus 316 ~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~ 388 (396)
T 3c5m_A 316 IENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKH 388 (396)
T ss_dssp CCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC-
T ss_pred cCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccccc
Confidence 2468999999887753 33333100 002567899999998887774 455 445566655543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-13 Score=160.67 Aligned_cols=330 Identities=12% Similarity=0.071 Sum_probs=229.0
Q ss_pred CCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC--CCceeEEEecc
Q 001184 509 ENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES--EGALKRTYIGF 586 (1130)
Q Consensus 509 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~~~~~~~~~ 586 (1130)
+.+.++++...+++|.++|..+.+....+... ..+..+.|+|||+++++++. ++.|.+||+. +++.+..+...
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~----dg~V~viD~~~~t~~~v~~i~~G 239 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGR----DGKVNMIDLWMKEPTTVAEIKIG 239 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEET----TSEEEEEETTSSSCCEEEEEECC
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcC----CCeEEEEECCCCCCcEeEEEecC
Confidence 34456777788999999999988777766543 34678999999999998864 7899999995 78888777642
Q ss_pred cCceeEEEEEc----CCCCEEEEEeC-CCcEEEEeCCCCceeEEEeccCC---------CCCcceEEEcCCCCEEE-EEe
Q 001184 587 RKKSAGVVQFD----TTRNRILAAGE-DNQIKFWDMDNVNMLTSTEAEGG---------LPSLPRLRFNKEGNLLV-VTT 651 (1130)
Q Consensus 587 ~~~~v~~~~~~----~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~---------~~~i~~v~~s~~~~~l~-~~~ 651 (1130)
. ....++|+ |+|+++++++. ++.|.++|..+.+.+..+...+. ...+..+..++++..++ ...
T Consensus 240 ~--~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~ 317 (567)
T 1qks_A 240 S--EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 317 (567)
T ss_dssp S--EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred C--CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec
Confidence 2 45678999 69998888764 58999999999999888764321 11345566666544333 333
Q ss_pred CCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCc
Q 001184 652 ADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKP 731 (1130)
Q Consensus 652 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (1130)
.+|.|.++|..+..
T Consensus 318 ~~g~v~~vd~~~~~------------------------------------------------------------------ 331 (567)
T 1qks_A 318 ETGKILLVDYTDLN------------------------------------------------------------------ 331 (567)
T ss_dssp TTTEEEEEETTCSS------------------------------------------------------------------
T ss_pred CCCeEEEEecCCCc------------------------------------------------------------------
Confidence 44666666543220
Q ss_pred ccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCccccccc
Q 001184 732 RNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAV 811 (1130)
Q Consensus 732 ~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 811 (1130)
.+.+..+
T Consensus 332 ----------------------------------------------------------~~~v~~i--------------- 338 (567)
T 1qks_A 332 ----------------------------------------------------------NLKTTEI--------------- 338 (567)
T ss_dssp ----------------------------------------------------------EEEEEEE---------------
T ss_pred ----------------------------------------------------------cceeeee---------------
Confidence 0000000
Q ss_pred ccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe--CCeEEEEECCCceeEEEEeC-----CCCCeEEEEEeC
Q 001184 812 APQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMS-----PPPASTFLAFHP 884 (1130)
Q Consensus 812 ~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~sp 884 (1130)
........+.|+|||++++++. +++|.++|+.+++.+..+.. |.+.-..+ ++|
T Consensus 339 -------------------~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p 398 (567)
T 1qks_A 339 -------------------SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHP 398 (567)
T ss_dssp -------------------ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EET
T ss_pred -------------------eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECC
Confidence 0123355788999999988776 68899999999998877764 22212122 578
Q ss_pred CCCcEEEEEe-CCCcEEEEEeec-------CeEEEEEecCCCCeeEEEEccCCCeEEEEeC-------CCcEEEEECCCC
Q 001184 885 QDNNIIAIGM-EDSTIQIYNVRV-------DEVKTKLKGHQKHITGLAFSTNLNILVSSGS-------DAQLIFWNTDTW 949 (1130)
Q Consensus 885 ~~~~~lasg~-~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~-------Dg~i~vwd~~~~ 949 (1130)
+++.+.+++. .+++|.++|..+ .+.+.++......-..+.++||+++|.+... ..+|.++|+.+.
T Consensus 399 ~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 399 TFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred CCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 4466666654 468999999988 6788888765444455789999999998763 358999999876
Q ss_pred cc---cce-eeEecc----CCCCCCCeEEEEEcCCCcEEEEE------cCCcEEEEECCCceeeeeeec
Q 001184 950 EK---RKS-IAIQLP----AGKLPVGETRVQFHSDQVRLLVN------HETQLAIYDGSKMECIRQWVP 1004 (1130)
Q Consensus 950 ~~---~~~-~~~~~~----~~~~~~~v~~~~~s~d~~~l~~~------~d~~i~v~d~~~~~~~~~~~~ 1004 (1130)
+. ... ..+... .......+..+.|+++|+.+.++ .++.|.|+|.++++.+..+..
T Consensus 479 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 479 TGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp CCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred cccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence 11 111 111110 01112568899999999988875 268999999999999888764
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.69 E-value=6.2e-15 Score=164.87 Aligned_cols=271 Identities=11% Similarity=0.073 Sum_probs=184.4
Q ss_pred CCCeEEEEE-----eCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEe----
Q 001184 358 FHHTLLVVG-----CGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF---- 428 (1130)
Q Consensus 358 dg~~llasg-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~---- 428 (1130)
++++++++. ..|+.|.+||..+++.+. .+..+..+ .++|||||++|+++.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~-------------------~i~~g~~p--~i~~spdg~~lyv~~~~~~ 72 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLG-------------------MVPTAFNG--HVQVSNDGKKIYTMTTYHE 72 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEE-------------------EEECCEEE--EEEECTTSSEEEEEEEEET
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEE-------------------EecCCCCC--ceEECCCCCEEEEEEeccc
Confidence 555544443 237899999999988764 23334444 899999999999886
Q ss_pred ------CCCeEEEEEecCCccceeeeeeec---CCCCeeEEEEecCCCceEEEEEc--CCCcEEEEe-cCCCeeeE-ecC
Q 001184 429 ------TKHLIHLYTYQGSNDLCQSLEIDA---HVGGVNDLAFSYPNKQLCIVTCG--DDKLIRVWD-LSGRKLFQ-FEG 495 (1130)
Q Consensus 429 ------~d~~i~vwd~~~~~~~~~~~~~~~---h~~~V~~i~~s~d~~~l~l~s~s--~d~~v~iwd-~~~~~~~~-~~~ 495 (1130)
.++.|.+||..+++.+........ +......++|+|||+ +|+++. .+++|.+|| .+++.+.. +.
T Consensus 73 ~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~--~l~v~n~~~~~~v~v~d~~~~~~~~~~i~- 149 (361)
T 2oiz_A 73 RITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK--FIVLQNASPATSIGIVDVAKGDYVEDVTA- 149 (361)
T ss_dssp TSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS--EEEEEEESSSEEEEEEETTTTEEEEEEGG-
T ss_pred ccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC--EEEEECCCCCCeEEEEECCCCcEEEEEec-
Confidence 367899999988776553322111 234577899999999 455554 368999999 77777766 44
Q ss_pred CCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCccee-------eecCCCccEEEEEEecCCCeEEEeeecCCCCcE
Q 001184 496 HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV-------DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSH 568 (1130)
Q Consensus 496 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-------~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1130)
+.+ ...+.+.|.+ ...+++.+.||.+.+|+++...... .+.....+ ..+.+++++..++..+. ++.
T Consensus 150 ~~~-~~~v~~~p~~-~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~----~~~ 222 (361)
T 2oiz_A 150 AAG-CWSVIPQPNR-PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSY----YGN 222 (361)
T ss_dssp GTT-EEEEEECTTS-SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBT----TSE
T ss_pred CCC-cceeEEcCCC-CeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeC----CCe
Confidence 222 2223444443 2577888999999999987533322 11222222 23345677877776654 678
Q ss_pred EEEeeCCCCcee--EEEeccc------C---ceeEEEEEcCCCCEEEEEeC-----------CCcEEEEeCCCCceeEEE
Q 001184 569 LVEWNESEGALK--RTYIGFR------K---KSAGVVQFDTTRNRILAAGE-----------DNQIKFWDMDNVNMLTST 626 (1130)
Q Consensus 569 i~~wd~~~~~~~--~~~~~~~------~---~~v~~~~~~~~~~~l~~~~~-----------dg~i~vwd~~~~~~~~~~ 626 (1130)
++++|....... ..+.... . .....++|+|++++++++.. .+.|.+||+.+++.+..+
T Consensus 223 v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i 302 (361)
T 2oiz_A 223 VYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARI 302 (361)
T ss_dssp EEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEE
T ss_pred EEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEE
Confidence 999998755422 2221100 0 01123689999998887653 348999999999999998
Q ss_pred eccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 627 EAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 627 ~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
..+. ...++|+|||++|++++. +.|.+||..++
T Consensus 303 ~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 303 PGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp ECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred ecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 7654 799999999999998887 99999999876
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-14 Score=159.48 Aligned_cols=245 Identities=15% Similarity=0.122 Sum_probs=182.9
Q ss_pred CCEEEEEEecCCCeEEEEEeCc------------------------CeEEEEeCCCCceeecccceeeeccccccceeee
Q 001184 348 SSVVSMDFHPFHHTLLVVGCGD------------------------GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAA 403 (1130)
Q Consensus 348 ~~V~~v~fspdg~~llasg~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1130)
..|.+++++|+|+ ++++...+ +.|.+||..+++.+..
T Consensus 24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------------ 84 (329)
T 3fvz_A 24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS------------------ 84 (329)
T ss_dssp SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE------------------
T ss_pred CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec------------------
Confidence 5799999999997 67777766 4799999988876541
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCc-cceeeeee---------ecCCCCeeEEEEec-CCCceEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSN-DLCQSLEI---------DAHVGGVNDLAFSY-PNKQLCIV 472 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~-~~~~~~~~---------~~h~~~V~~i~~s~-d~~~l~l~ 472 (1130)
.-.++-.....++++|+|+++++...++.|++||..+.. .+. .+ .++......++|+| ++. +++
T Consensus 85 ~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv 159 (329)
T 3fvz_A 85 SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFV 159 (329)
T ss_dssp ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EEE
T ss_pred cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EEE
Confidence 122455678999999999999888889999999986542 222 22 24455789999999 677 677
Q ss_pred EEc-CCCcEEEEecCCCeeeEecCC----------CcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeec--C
Q 001184 473 TCG-DDKLIRVWDLSGRKLFQFEGH----------EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD--A 539 (1130)
Q Consensus 473 s~s-~d~~v~iwd~~~~~~~~~~~h----------~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~--~ 539 (1130)
+.+ .++.|++||.+|..+..+... -.....+++.++ .+.++++...+++|++|+.++++....+. .
T Consensus 160 ~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~-~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~ 238 (329)
T 3fvz_A 160 SDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH-LDQLCVADRENGRIQCFKTDTKEFVREIKHAS 238 (329)
T ss_dssp EECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEECCTT
T ss_pred EeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC-CCEEEEEECCCCEEEEEECCCCcEEEEEeccc
Confidence 776 699999999888888877532 234788988653 25778888889999999998776666553 3
Q ss_pred CCccEEEEEEecCCCeEEEeee---cCCCCcEEEEeeCCCCceeEEEe---cccCceeEEEEEcCCCCEEEEEeCCCcEE
Q 001184 540 PGLWCTTMLYSADGSRLFSCGT---SKEGDSHLVEWNESEGALKRTYI---GFRKKSAGVVQFDTTRNRILAAGEDNQIK 613 (1130)
Q Consensus 540 ~~~~v~~~~~s~~~~~l~~~~~---~~~~~~~i~~wd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 613 (1130)
....+..++|+| +..++..+. .......|++||..+++.+..+. ++. .....++++|+|..+++...++.|+
T Consensus 239 ~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~-~~p~~ia~~~dG~lyvad~~~~~I~ 316 (329)
T 3fvz_A 239 FGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHF-DMPHDIVASEDGTVYIGDAHTNTVW 316 (329)
T ss_dssp TTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCC-SSEEEEEECTTSEEEEEESSSCCEE
T ss_pred cCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCcc-CCeeEEEECCCCCEEEEECCCCEEE
Confidence 455788999999 433333321 01225689999999999988874 322 3577899999998788888899999
Q ss_pred EEeCCC
Q 001184 614 FWDMDN 619 (1130)
Q Consensus 614 vwd~~~ 619 (1130)
+|++..
T Consensus 317 ~~~~~~ 322 (329)
T 3fvz_A 317 KFTLTE 322 (329)
T ss_dssp EEEEEE
T ss_pred EEeCCc
Confidence 999753
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-14 Score=178.91 Aligned_cols=250 Identities=12% Similarity=0.018 Sum_probs=175.9
Q ss_pred eecCCCccEEEEEEcCCCCEEEEE--eCCCeEEEEEecCCccceeeeeeecCCCCee---------EEEEe--cCCCceE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVA--FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVN---------DLAFS--YPNKQLC 470 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~--~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~---------~i~~s--~d~~~l~ 470 (1130)
.+.+|...|..++|++++.++++. +.++...||....+...+ .+..|...+. ...|+ |||+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~- 93 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE---SALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL- 93 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE---ESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE-
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc---eeCCCCccccccccccCCccceeeeecCCCeE-
Confidence 466889999999999987777777 568899999975443332 4556666666 66676 999941
Q ss_pred EEEEc-CCCcEEEEecC--C-CeeeEecC-----CCcCEEEEeecccCCccEEEEEecC----------CcEEEEEccCC
Q 001184 471 IVTCG-DDKLIRVWDLS--G-RKLFQFEG-----HEAPVYSVCPHQKENIHFIFSTAVD----------GKIKAWLYDNV 531 (1130)
Q Consensus 471 l~s~s-~d~~v~iwd~~--~-~~~~~~~~-----h~~~v~~~~~~~~~~~~~l~s~s~d----------g~i~vwd~~~~ 531 (1130)
|+.++ .+..|.+|+.. + .....+.. |...+.+++|+| ||+.|++++.+ ..|++||+.+.
T Consensus 94 la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~sp--Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~ 171 (662)
T 3azo_A 94 LVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLP--ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGS 171 (662)
T ss_dssp EEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEET--TTTEEEEEEEEECSSSTTCEEEEEEEEETTST
T ss_pred EEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECC--CCCEEEEEEecccCCCCCCceeEEEEEECCCC
Confidence 44443 46677777755 4 55666666 677788888865 56788888877 58999999872
Q ss_pred -----cceeeec-CCCccEEEEEEecCCCeEEEeeecCC----CCcEEEEeeCC-CC---ceeEEEecccCceeEEEEEc
Q 001184 532 -----GSRVDYD-APGLWCTTMLYSADGSRLFSCGTSKE----GDSHLVEWNES-EG---ALKRTYIGFRKKSAGVVQFD 597 (1130)
Q Consensus 532 -----~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~----~~~~i~~wd~~-~~---~~~~~~~~~~~~~v~~~~~~ 597 (1130)
.....+. .+...+..++|+|||++|+.++.+.. ....|++||+. ++ +.. .+...+...+..+.|+
T Consensus 172 ~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~-~l~~~~~~~~~~~~~s 250 (662)
T 3azo_A 172 AAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTR-TLLGGPEEAIAQAEWA 250 (662)
T ss_dssp TTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEE-EEEEETTBCEEEEEEC
T ss_pred ccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccE-EeCCCCCceEcceEEC
Confidence 3334444 45567888999999999998875321 13689999998 56 343 3333333478889999
Q ss_pred CCCCEEEEEeCCC--cEEEEeCCCCceeEEEeccCCC------CCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 598 TTRNRILAAGEDN--QIKFWDMDNVNMLTSTEAEGGL------PSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 598 ~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~------~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
|||+++++++.++ .|++||+.+++.......+... ..+..++|+|++++++++.. +.++||.+
T Consensus 251 pdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 251 PDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp TTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred CCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 9999777787788 6777777677654443322211 01467888899998888888 88888854
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-13 Score=160.50 Aligned_cols=323 Identities=11% Similarity=0.110 Sum_probs=214.9
Q ss_pred CcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCC--CCceeEEEeccCCCCCcceEEEc--
Q 001184 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMD--NVNMLTSTEAEGGLPSLPRLRFN-- 641 (1130)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~i~~v~~s-- 641 (1130)
++.|.++|..+++.+..+.... ....+.|+|+|+++++++.|+.|.+||+. +++.+..+.... ....++|+
T Consensus 176 ~~~V~viD~~t~~v~~~i~~g~--~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~---~P~~ia~s~~ 250 (567)
T 1qks_A 176 AGQIALIDGSTYEIKTVLDTGY--AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS---EARSIETSKM 250 (567)
T ss_dssp TTEEEEEETTTCCEEEEEECSS--CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS---EEEEEEECCS
T ss_pred CCeEEEEECCCCeEEEEEeCCC--CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC---CCceeEEccc
Confidence 7899999999999998887433 45689999999999999999999999996 788887776533 35789999
Q ss_pred --CCCCEEEEEeC-CCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccc
Q 001184 642 --KEGNLLVVTTA-DQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTIL 718 (1130)
Q Consensus 642 --~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~ 718 (1130)
|||++++++.. ++.+.++|..+. +.++.+..
T Consensus 251 ~~pDGk~l~v~n~~~~~v~ViD~~t~-~~~~~i~~--------------------------------------------- 284 (567)
T 1qks_A 251 EGWEDKYAIAGAYWPPQYVIMDGETL-EPKKIQST--------------------------------------------- 284 (567)
T ss_dssp TTCTTTEEEEEEEETTEEEEEETTTC-CEEEEEEC---------------------------------------------
T ss_pred cCCCCCEEEEEEccCCeEEEEECCCC-cEEEEEec---------------------------------------------
Confidence 69998887765 588999986554 11111100
Q ss_pred cCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCC
Q 001184 719 NGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNR 798 (1130)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~ 798 (1130)
.+..
T Consensus 285 ------------------------------------------------------------------~~~~---------- 288 (567)
T 1qks_A 285 ------------------------------------------------------------------RGMT---------- 288 (567)
T ss_dssp ------------------------------------------------------------------CEEC----------
T ss_pred ------------------------------------------------------------------cccc----------
Confidence 0000
Q ss_pred CCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe--CCeEEEEECCCceeEEEEe-CCCC
Q 001184 799 TEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFM-SPPP 875 (1130)
Q Consensus 799 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~-~~~~ 875 (1130)
.+ +.. . .....+..+.+++++..++... .|.|.++|..+.+.+.... ....
T Consensus 289 -----------------~~---~~~----~--~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~ 342 (567)
T 1qks_A 289 -----------------YD---EQE----Y--HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAER 342 (567)
T ss_dssp -----------------TT---TCC----E--ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCS
T ss_pred -----------------cc---ccc----c--cCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccc
Confidence 00 000 0 0122455566677666555443 5888888887654322211 2334
Q ss_pred CeEEEEEeCCCCcEEEEEe-CCCcEEEEEeecCeEEEEEec-----CCCCeeEEEEccCCCeEE-EEe-CCCcEEEEECC
Q 001184 876 ASTFLAFHPQDNNIIAIGM-EDSTIQIYNVRVDEVKTKLKG-----HQKHITGLAFSTNLNILV-SSG-SDAQLIFWNTD 947 (1130)
Q Consensus 876 ~i~~l~~sp~~~~~lasg~-~dg~v~iwd~~~~~~~~~l~~-----h~~~V~~l~~s~dg~~L~-s~s-~Dg~i~vwd~~ 947 (1130)
....+.|+| ++++++++. .++.|.++|+.+++++..+.. |.+.-.. -++|++..+. +.. .+++|.++|..
T Consensus 343 ~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~ 420 (567)
T 1qks_A 343 FLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTD 420 (567)
T ss_dssp SEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred cccCceECC-CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCC
Confidence 577889999 677665554 678999999999998877654 4332222 2578755544 443 46899999998
Q ss_pred CC-------cccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEc--------CCcEEEEECCCc-----ee-eeeee---
Q 001184 948 TW-------EKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--------ETQLAIYDGSKM-----EC-IRQWV--- 1003 (1130)
Q Consensus 948 ~~-------~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--------d~~i~v~d~~~~-----~~-~~~~~--- 1003 (1130)
+. +.... +... + ..-..+..+|++++|.+.. .+.|.|+|+.+. .. +..+.
T Consensus 421 ~~~~~~~~~kvv~~--i~~~-g---~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~ 494 (567)
T 1qks_A 421 PEGHPDNAWKILDS--FPAL-G---GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAE 494 (567)
T ss_dssp TTTCTTTBTSEEEE--EECS-C---SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHH
T ss_pred CCCCccccCEEEEE--EecC-C---CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecccc
Confidence 72 22211 1111 1 2234577899999999854 358999999877 21 12221
Q ss_pred --cCCCCCCCeEEEEECCCCCEEEEEe-----CCCcEEEEeCCCcccccccCC
Q 001184 1004 --PQDVLSSPISSAAYSCNSQLIYATF-----TDGSIGVFDADSLRLRCRIAP 1049 (1130)
Q Consensus 1004 --~~~~~~~~v~~v~~s~dg~~l~t~~-----~Dg~i~vwd~~~~~~~~~~~~ 1049 (1130)
........+..+.|++||+.+.++. .++.|.|+|..++++...+..
T Consensus 495 ~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 495 WAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp HHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred ccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence 1111145789999999999877764 379999999999998888763
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-13 Score=149.77 Aligned_cols=245 Identities=14% Similarity=0.156 Sum_probs=178.0
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEE-cCCCCEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW-SPDGNFI 424 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~-spdg~~l 424 (1130)
+-..+.+++++|+|+ ++++...++.|.+||.. ++.+.... .. ....+|...+..+++ .++++++
T Consensus 28 ~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~-----~~--------~~~~~~~~~p~~i~~~~~~g~l~ 92 (286)
T 1q7f_A 28 QFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFG-----EC--------GKRDSQLLYPNRVAVVRNSGDII 92 (286)
T ss_dssp CBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEEC-----CB--------SSSTTCBSSEEEEEEETTTTEEE
T ss_pred ccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEEec-----cc--------CCCcccccCceEEEEEcCCCeEE
Confidence 446799999999997 68888889999999987 44432100 00 001245567899999 5788777
Q ss_pred EEEeC-CCeEEEEEecCCccceeeeeee-cCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEec--CCCcCE
Q 001184 425 GVAFT-KHLIHLYTYQGSNDLCQSLEID-AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE--GHEAPV 500 (1130)
Q Consensus 425 as~~~-d~~i~vwd~~~~~~~~~~~~~~-~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~--~h~~~v 500 (1130)
++... ++.|.+|| .+++.+. .+. .+...+.+++++++|+ ++++...++.|.+||.+++.+..+. ++...+
T Consensus 93 v~~~~~~~~i~~~d-~~g~~~~---~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p 166 (286)
T 1q7f_A 93 VTERSPTHQIQIYN-QYGQFVR---KFGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFP 166 (286)
T ss_dssp EEECGGGCEEEEEC-TTSCEEE---EECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECTTSCEEEEEECTTTCSSE
T ss_pred EEcCCCCCEEEEEC-CCCcEEE---EecCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcCCCCEEEEeCCCCccCCc
Confidence 77643 78999999 4555443 232 3445789999999998 7888888899999997788777764 455678
Q ss_pred EEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCC--ccEEEEEEecCCCeEEEeeecCCCCc-EEEEeeCCCC
Q 001184 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG--LWCTTMLYSADGSRLFSCGTSKEGDS-HLVEWNESEG 577 (1130)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~~~~-~i~~wd~~~~ 577 (1130)
..+++++ ++.++++...++.|++||.+. .....+.... ..+..++++++|+.+++... ++ .|.+||. ++
T Consensus 167 ~~i~~~~--~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~----~~~~i~~~~~-~g 238 (286)
T 1q7f_A 167 NGVVVND--KQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNH----NNFNLTIFTQ-DG 238 (286)
T ss_dssp EEEEECS--SSEEEEEEGGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECS----SSCEEEEECT-TS
T ss_pred EEEEECC--CCCEEEEECCCCEEEEEcCCC-CEEEEEccCCccCCCcEEEECCCCCEEEEeCC----CCEEEEEECC-CC
Confidence 8998865 557777778899999999743 3444444332 46889999999988777653 54 8999995 56
Q ss_pred ceeEEEecccC-ceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 001184 578 ALKRTYIGFRK-KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV 620 (1130)
Q Consensus 578 ~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 620 (1130)
+.+..+..+.. .....++++|+|+.+++ +.++.|++|++...
T Consensus 239 ~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 239 QLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp CEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 67776665432 23668999999976666 67999999998654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-14 Score=159.00 Aligned_cols=251 Identities=11% Similarity=0.052 Sum_probs=183.0
Q ss_pred CCceeEEEEecCCCEEEEEe-C------------------------CeEEEEECCCceeEEEEe-CCCCCeEEEEEeCCC
Q 001184 833 EDVVPCVALSKNDSYVMSAG-G------------------------GKVSLFNMMNFKVMTTFM-SPPPASTFLAFHPQD 886 (1130)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~-d------------------------g~i~iwd~~~~~~~~~~~-~~~~~i~~l~~sp~~ 886 (1130)
-..+.+++++++|+++++.. + ++|.+||..+++.+..+. .+......++++| +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 46789999999999998877 4 379999999998877665 3446789999999 7
Q ss_pred CcEEEEEeCCCcEEEEEeecCe-EEEEE---------ecCCCCeeEEEEcc-CCCeEEEEe-CCCcEEEEECCCCcccce
Q 001184 887 NNIIAIGMEDSTIQIYNVRVDE-VKTKL---------KGHQKHITGLAFST-NLNILVSSG-SDAQLIFWNTDTWEKRKS 954 (1130)
Q Consensus 887 ~~~lasg~~dg~v~iwd~~~~~-~~~~l---------~~h~~~V~~l~~s~-dg~~L~s~s-~Dg~i~vwd~~~~~~~~~ 954 (1130)
++++++...++.|++|+..... .+..+ .++.....+|+++| +|..+++.+ .++.|++|+.+ ++....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEEEE
Confidence 8888888889999999986542 45555 34555789999999 788888876 68999999954 332222
Q ss_pred eeEeccC----CCCCCCeEEEEEcCC-CcEEEEE-cCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEE-
Q 001184 955 IAIQLPA----GKLPVGETRVQFHSD-QVRLLVN-HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYAT- 1027 (1130)
Q Consensus 955 ~~~~~~~----~~~~~~v~~~~~s~d-~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~- 1027 (1130)
....-.. ...-.....++++|+ +.++++. .++.|++|+..+|+.+..+... .+...+.+++|+| +..+++.
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~-~~~~~~~~~~~~p-g~~~~~~g 258 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA-SFGRNVFAISYIP-GFLFAVNG 258 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT-TTTTCEEEEEEET-TEEEEEEC
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc-ccCCCcceeeecC-CEEEEeCC
Confidence 1111000 001134789999999 6655553 5789999999989988887543 3356788999999 4333333
Q ss_pred ------eCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q 001184 1028 ------FTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1096 (1130)
Q Consensus 1028 ------~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~ 1096 (1130)
..+..|++|++.+++.+..+... .++...+..++++|+ +.++++...+++|.+|++....
T Consensus 259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~--------~~~~~~p~~ia~~~d-G~lyvad~~~~~I~~~~~~~~~ 324 (329)
T 3fvz_A 259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPV--------RKHFDMPHDIVASED-GTVYIGDAHTNTVWKFTLTEKM 324 (329)
T ss_dssp CCCTTCSCCCCEEEEETTTCCEEEEECCS--------SSCCSSEEEEEECTT-SEEEEEESSSCCEEEEEEEECS
T ss_pred CEEeccCCCcEEEEEEcCCCeEEEEEcCC--------CCccCCeeEEEECCC-CCEEEEECCCCEEEEEeCCccc
Confidence 33558999999999988776421 122344667888884 6899999999999999987644
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.7e-14 Score=159.86 Aligned_cols=264 Identities=10% Similarity=0.108 Sum_probs=177.0
Q ss_pred CCCCEEEEEEecCCCeEEEEEe--------CcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGC--------GDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 417 (1130)
.-..+...+| ||++++++.. .++.|.+||+.+++... + ..+.+++|
T Consensus 13 ~~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~ 66 (347)
T 2gop_A 13 KFAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRI 66 (347)
T ss_dssp CSCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEE
T ss_pred eeEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEE
Confidence 3456788888 8987555432 25679999998876432 2 46889999
Q ss_pred cCCCCEEEEEeCC---C--eEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcC----------------
Q 001184 418 SPDGNFIGVAFTK---H--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD---------------- 476 (1130)
Q Consensus 418 spdg~~las~~~d---~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~---------------- 476 (1130)
||||++||.++.+ + .|.+||+.+++... +..+.. +..++|+|||+ .|+.++.
T Consensus 67 SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~--~l~~~~~~~~~~~~~~~~~~~~~ 139 (347)
T 2gop_A 67 SPDGKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSR--KLLIVGFKRREDEDFIFEDDVPA 139 (347)
T ss_dssp CTTSSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSS--EEEEEEECCCC---------CCC
T ss_pred CCCCCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCC--EEEEEEccCCCcCCcEEEcccce
Confidence 9999999988754 3 47788888765432 222333 99999999999 4555442
Q ss_pred -----------CCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCC-------cEEEEEccCCcceeee
Q 001184 477 -----------DKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDG-------KIKAWLYDNVGSRVDY 537 (1130)
Q Consensus 477 -----------d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg-------~i~vwd~~~~~~~~~~ 537 (1130)
...|.+|| .+++.+..+.. . .+..++|+ +++ +++++..++ ...+|.++ ......+
T Consensus 140 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s--pdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l 213 (347)
T 2gop_A 140 WFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH--RDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKM 213 (347)
T ss_dssp C---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE--TTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEE
T ss_pred eecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC--CCe-EEEEEecccccccccccccEEEeC-CCceEEe
Confidence 25789999 45554355655 3 77788886 456 777776542 45666665 3333333
Q ss_pred cCCCccEEEEEEecCCCeEEEeeecCC----CCcEEEEeeCCCCceeEEEecccCceeEE-EEEcCCCCEEEEEeCCCcE
Q 001184 538 DAPGLWCTTMLYSADGSRLFSCGTSKE----GDSHLVEWNESEGALKRTYIGFRKKSAGV-VQFDTTRNRILAAGEDNQI 612 (1130)
Q Consensus 538 ~~~~~~v~~~~~s~~~~~l~~~~~~~~----~~~~i~~wd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i 612 (1130)
..+ ..+..+ +|||++|+.++.... ....|++|| +++....... ....+.. +.|+ ++ .+++++.++.+
T Consensus 214 ~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~~~~~~~~~~s-dg-~~~~~~~~~~~ 285 (347)
T 2gop_A 214 FEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDE-VDRGVGQAKIKD-GK-VYFTLFEEGSV 285 (347)
T ss_dssp EEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTT-CCSEEEEEEEET-TE-EEEEEEETTEE
T ss_pred ccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEecccc-CCcccCCccEEc-Cc-EEEEEecCCcE
Confidence 333 444444 999999988764221 246899999 5554433333 3336665 8899 88 88889999999
Q ss_pred EEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcE-EEEEcC
Q 001184 613 KFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGI-KILANA 662 (1130)
Q Consensus 613 ~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i-~iw~~~ 662 (1130)
++| +.+++....... ...+.+++|+| .++++++.++.. .+|.++
T Consensus 286 ~l~-~~~g~~~~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 286 NLY-IWDGEIKPIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEE-EESSSEEEEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EEE-EcCCceEEEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 999 876665444332 23688999999 677777777665 777765
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.65 E-value=8.9e-15 Score=179.65 Aligned_cols=286 Identities=10% Similarity=0.014 Sum_probs=186.9
Q ss_pred cCCCCEEEEEEecCCCeEEEEE--eCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEE---------
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVG--CGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVS--------- 413 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~--------- 413 (1130)
+|...|..++|++++- ++++. +.++...||....+.... .+..|...+.
T Consensus 21 ~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~-------------------~l~~~~~~~~~~~~~~~~~ 80 (662)
T 3azo_A 21 SRSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEE-------------------SALPAPWNVRNRVFEYSGF 80 (662)
T ss_dssp HTCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEE-------------------ESSCTTCCBCCCGGGTCCC
T ss_pred hcCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcc-------------------eeCCCCccccccccccCCc
Confidence 4888999999998864 45555 557889999964333222 1334444444
Q ss_pred EEEEc--CCCCE-EEEEeC-CCeEEEEEec--C-Cccceeeeeeec-----CCCCeeEEEEecCCCceEEEEEcCC----
Q 001184 414 RVAWS--PDGNF-IGVAFT-KHLIHLYTYQ--G-SNDLCQSLEIDA-----HVGGVNDLAFSYPNKQLCIVTCGDD---- 477 (1130)
Q Consensus 414 ~v~~s--pdg~~-las~~~-d~~i~vwd~~--~-~~~~~~~~~~~~-----h~~~V~~i~~s~d~~~l~l~s~s~d---- 477 (1130)
..+|+ |||++ ||.++. +..|.+|++. + +. .. .+.. |...+.+++|+|||+ .|++++.|
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~~~ 154 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFTGE 154 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEECSS
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEecccCC
Confidence 55565 99999 887654 4566666665 3 43 22 2344 677899999999999 67777666
Q ss_pred ------CcEEEEecCC------CeeeEec-CCCcCEEEEeecccCCccEEEEEecC--------CcEEEEEcc-CC---c
Q 001184 478 ------KLIRVWDLSG------RKLFQFE-GHEAPVYSVCPHQKENIHFIFSTAVD--------GKIKAWLYD-NV---G 532 (1130)
Q Consensus 478 ------~~v~iwd~~~------~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d--------g~i~vwd~~-~~---~ 532 (1130)
..|++||..+ .....+. .+...+..++|+ +||+.|+.++.+ ..|.+||++ ++ .
T Consensus 155 ~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~S--pDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~ 232 (662)
T 3azo_A 155 GPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLS--PDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD 232 (662)
T ss_dssp STTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEEC--TTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE
T ss_pred CCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceEC--CCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc
Confidence 5899999554 4556666 666777777775 566888877755 379999998 45 2
Q ss_pred ceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCc-------eeEEEEEcCCCCEEEE
Q 001184 533 SRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK-------SAGVVQFDTTRNRILA 605 (1130)
Q Consensus 533 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~ 605 (1130)
.......+...+..+.|+|||++++++. .++...|++||..+++.......+... .+..++|+++++++++
T Consensus 233 ~~~l~~~~~~~~~~~~~spdg~l~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~ 310 (662)
T 3azo_A 233 TRTLLGGPEEAIAQAEWAPDGSLIVATD--RTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVV 310 (662)
T ss_dssp EEEEEEETTBCEEEEEECTTSCEEEEEC--TTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEE
T ss_pred cEEeCCCCCceEcceEECCCCeEEEEEC--CCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEE
Confidence 3333333456789999999999555543 233448999998777655443332211 0456889999999999
Q ss_pred EeCCCcEEEE--eCCCCceeEEEeccCCCCCcceE-EEcCCCCEEEEEeCCCcEEEE--EcCCC
Q 001184 606 AGEDNQIKFW--DMDNVNMLTSTEAEGGLPSLPRL-RFNKEGNLLVVTTADQGIKIL--ANADG 664 (1130)
Q Consensus 606 ~~~dg~i~vw--d~~~~~~~~~~~~~~~~~~i~~v-~~s~~~~~l~~~~~dg~i~iw--~~~~~ 664 (1130)
++. +.+++| |+.+++ +..+..+. ..+..+ +++.+.-.++.++.+....+| ++.++
T Consensus 311 ~~~-~~~~l~~~d~~~~~-~~~l~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 311 HGK-GAAVLGILDPESGE-LVDAAGPW--TEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp EBS-SSCEEEEEETTTTE-EEECCSSC--CEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEc-CccEEEEEECCCCc-EEEecCCC--CeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 988 999999 655555 45554442 245555 454443344445555544554 54444
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-13 Score=148.54 Aligned_cols=245 Identities=13% Similarity=0.105 Sum_probs=178.8
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeee---ecCCCCeeEEEEe-cCCCceEEEEEc-CCCcEE
Q 001184 407 DSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEI---DAHVGGVNDLAFS-YPNKQLCIVTCG-DDKLIR 481 (1130)
Q Consensus 407 ~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~---~~h~~~V~~i~~s-~d~~~l~l~s~s-~d~~v~ 481 (1130)
++-..+.+++++|+|+++++...++.|.+||.. ++.+...... .+|...+.++++. +++. ++++.. .++.|+
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~--l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD--IIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE--EEEEECGGGCEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe--EEEEcCCCCCEEE
Confidence 455679999999999998888889999999987 4433321110 1345678999995 6665 555554 388999
Q ss_pred EEecCCCeeeEec-CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeec--CCCccEEEEEEecCCCeEEE
Q 001184 482 VWDLSGRKLFQFE-GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD--APGLWCTTMLYSADGSRLFS 558 (1130)
Q Consensus 482 iwd~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~ 558 (1130)
+||.+++.+..+. .+...+..+++.+ ++.++++...++.|.+||.+. .....+. .+...+..++++++|+.+++
T Consensus 104 ~~d~~g~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~p~~i~~~~~g~l~v~ 180 (286)
T 1q7f_A 104 IYNQYGQFVRKFGATILQHPRGVTVDN--KGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFIS 180 (286)
T ss_dssp EECTTSCEEEEECTTTCSCEEEEEECT--TSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred EECCCCcEEEEecCccCCCceEEEEeC--CCCEEEEECCCCEEEEEcCCC-CEEEEeCCCCccCCcEEEEECCCCCEEEE
Confidence 9998888877764 3446788898865 557777777889999999653 3333332 23346899999999987766
Q ss_pred eeecCCCCcEEEEeeCCCCceeEEEeccc-CceeEEEEEcCCCCEEEEEeCCC-cEEEEeCCCCceeEEEeccCCCCCcc
Q 001184 559 CGTSKEGDSHLVEWNESEGALKRTYIGFR-KKSAGVVQFDTTRNRILAAGEDN-QIKFWDMDNVNMLTSTEAEGGLPSLP 636 (1130)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~i~ 636 (1130)
... ++.|++||. +++.+..+.... ......++++++|+.+++...++ .|++||. +++.+..+..+.....+.
T Consensus 181 ~~~----~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~ 254 (286)
T 1q7f_A 181 DNR----AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCF 254 (286)
T ss_dssp EGG----GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEE
T ss_pred ECC----CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcce
Confidence 543 789999997 456666665432 13577899999998888887776 9999995 566777776554433467
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 637 RLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 637 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+++++|+|+++++ +.++.|++|+....
T Consensus 255 ~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 255 DVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred eEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 8999999986666 67999999997543
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=6.2e-10 Score=138.99 Aligned_cols=586 Identities=11% Similarity=0.061 Sum_probs=337.4
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 426 (1130)
...|+++.-.++|. |=.|+.+| +..||-.+ |+.+....... ..-....|.++...++|.+.+
T Consensus 42 ~n~v~~I~qD~~G~--lWigT~~G-L~ryDG~~--------f~~~~~~~~~~------~~l~~n~I~~i~~d~~g~lWi- 103 (795)
T 4a2l_A 42 QSTVFSIDQDKRGN--MWFATYDG-VNKYDGYA--------FTVYQHNEDDP------NSIANDISRIVKTDSQGRVWI- 103 (795)
T ss_dssp SSCEEEEEECTTSC--EEEEETTE-EEEECSSC--------EEEECCCTTCT------TSCSCSCEEEEEECTTSCEEE-
T ss_pred cceeEEEEEcCCCC--EEEeecCc-CcccCCCc--------eEEEeCCCCCC------CcccccceeEEEECCCCCEEE-
Confidence 45899999999995 44566666 56666331 22221110000 000235799999999998665
Q ss_pred EeCCCeEEEEEecCCccceeeeeeecCC----CCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecC-C-CcC-
Q 001184 427 AFTKHLIHLYTYQGSNDLCQSLEIDAHV----GGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEG-H-EAP- 499 (1130)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~----~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~-h-~~~- 499 (1130)
|+.+| +..||..+++... +.... ..|.++...++|. +.+.. . +.+..||........+.. + ...
T Consensus 104 gT~~G-l~~yd~~~~~f~~----~~~~~~~~~~~i~~i~~d~~g~--lwi~t-~-~gl~~~~~~~~~~~~~~~~~~~~~~ 174 (795)
T 4a2l_A 104 GTRDG-LSRYDEEKDIFQN----FFYEKNGKHLQVNGIEEISPEQ--LLIST-P-EGLIMFDIKESKFIDDSFSTAMHKT 174 (795)
T ss_dssp EESSC-EEEEETTTTEEEE----ECCEETTEECCCCEEEEEETTE--EEEEE-T-TEEEEEETTTTEEECSSSCHHHHTC
T ss_pred EeCCc-hheeCCCCCeEEe----ccccccCCCceEEEEEECCCCC--EEEEE-C-CceEEEECCCCEEEeccCCCCCCcc
Confidence 44555 8899987754221 21111 1288999988887 44443 3 458899943333322221 1 123
Q ss_pred EEEEeecccCCccEEEEEecCCcEEEEEccCCcceeee-cCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc
Q 001184 500 VYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY-DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1130)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1130)
|.++.... ++ .|..++.++.+..|+..+....... ......|.++...++|...+... .+-|..||..+++
T Consensus 175 i~~i~~d~--~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~-----~~Gl~~~~~~~~~ 246 (795)
T 4a2l_A 175 IASTLYRQ--GD-QIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATE-----GAGLFLINPKTKE 246 (795)
T ss_dssp CEEEEEEE--TT-EEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEB-----SSCEEEEETTTTE
T ss_pred eEEEEECC--CC-CEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEEC-----CCCeEEEeCCCCe
Confidence 77776543 33 4555676666888887665433221 12345688888888887666542 3348899987765
Q ss_pred eeEEEecc------cCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEecc-----CCCCCcceEEEcCCCCEE
Q 001184 579 LKRTYIGF------RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE-----GGLPSLPRLRFNKEGNLL 647 (1130)
Q Consensus 579 ~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~i~~v~~s~~~~~l 647 (1130)
........ ....|.++...++|... .|+.+ .|.+||..+++........ -....|.++...++|. |
T Consensus 247 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-l 323 (795)
T 4a2l_A 247 IKNYLHSPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-M 323 (795)
T ss_dssp EEEECCCTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-E
T ss_pred EEEeecCCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-E
Confidence 44322211 12368888888877644 45555 5899998877654332211 1123688899999887 4
Q ss_pred EEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccC
Q 001184 648 VVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARG 727 (1130)
Q Consensus 648 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1130)
.+|+.++-|..|+..... +..+. +.
T Consensus 324 Wigt~~~Gl~~~~~~~~~--~~~~~-------------------------~~---------------------------- 348 (795)
T 4a2l_A 324 WLGTYFGGLNYYHPIRNR--FKNIR-------------------------NI---------------------------- 348 (795)
T ss_dssp EEEESSSCEEEECGGGGS--SEEEC-------------------------CC----------------------------
T ss_pred EEEECCCCeEEeCCCccc--ceEEc-------------------------CC----------------------------
Confidence 557777778888754320 10000 00
Q ss_pred CCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCccc
Q 001184 728 IEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKA 807 (1130)
Q Consensus 728 ~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 807 (1130)
.. ...-....|.++...++|. |-+++.++-+..|+...+...
T Consensus 349 --------------------~~------------~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~----- 390 (795)
T 4a2l_A 349 --------------------PY------------KNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFT----- 390 (795)
T ss_dssp --------------------TT------------SSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEE-----
T ss_pred --------------------CC------------CCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEE-----
Confidence 00 0000234577888877776 445666656766654322110
Q ss_pred ccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEe----CCCCCeEEEEE
Q 001184 808 TAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFM----SPPPASTFLAF 882 (1130)
Q Consensus 808 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~ 882 (1130)
.+....+... ..-....|.+++..++|+.|-+|. ++.|.+||..+++...... .....|.++..
T Consensus 391 -------~~~~~~~~~~----~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~ 459 (795)
T 4a2l_A 391 -------SYTLQEDESA----RGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILP 459 (795)
T ss_dssp -------EECCC----------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEE
T ss_pred -------EEecCCCCcc----cCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEE
Confidence 0000000000 001246789999999998344444 6889999998876543322 13456889988
Q ss_pred eCCCCcEEEEEeCCCcEEEEEeecCeEEEEEec------CCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceee
Q 001184 883 HPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKG------HQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIA 956 (1130)
Q Consensus 883 sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~------h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~ 956 (1130)
.+ ++.+.+ |+.+ -+.+|+..+++....... +...|.++...++|+..+... . -|..|+..+++. ...
T Consensus 460 d~-~g~lwi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~--~~~ 532 (795)
T 4a2l_A 460 DG-EGNLWL-GTLS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI--QKA 532 (795)
T ss_dssp CS-SSCEEE-EESS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE--EEC
T ss_pred CC-CCCEEE-EecC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE--EEe
Confidence 88 666555 4444 488999887765432211 235789999999988766554 4 488899876543 110
Q ss_pred Ee-ccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCC-CCCCeEEEEECCCCCEEEEEeCCCcEE
Q 001184 957 IQ-LPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDV-LSSPISSAAYSCNSQLIYATFTDGSIG 1034 (1130)
Q Consensus 957 ~~-~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~-~~~~v~~v~~s~dg~~l~t~~~Dg~i~ 1034 (1130)
.. ....-....+.++...++|.+.+++.. .+..||..+++... +....+ ....|.++...++|.+.+++ ++-|.
T Consensus 533 ~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl~ 608 (795)
T 4a2l_A 533 SILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQIKR-YNTTNGLPNNVVYGILEDSFGRLWLST--NRGIS 608 (795)
T ss_dssp CCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTTEEEE-ECGGGTCSCSCEEEEEECTTSCEEEEE--TTEEE
T ss_pred cCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCCcEEE-eCCCCCCchhheEEEEECCCCCEEEEc--CCceE
Confidence 00 011112256889999999997776655 89999988765433 222111 24578999999999876655 34577
Q ss_pred EEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 001184 1035 VFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSE 1094 (1130)
Q Consensus 1035 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~ 1094 (1130)
.|+..+++.. .+....-+ .......-++...+ ++ .|..|+.+| +..++...
T Consensus 609 ~~~~~~~~~~-~~~~~dGl-----~~~~f~~~~~~~~~-~G-~l~~g~~~G-l~~~~p~~ 659 (795)
T 4a2l_A 609 CFNPETEKFR-NFTESDGL-----QSNQFNTASYCRTS-VG-QMYFGGING-ITTFRPEL 659 (795)
T ss_dssp EEETTTTEEE-EECGGGTC-----SCSCEEEEEEEECT-TS-CEEEEETTE-EEEECGGG
T ss_pred EEcCCCCcEE-EcCCcCCC-----ccccCccCceeECC-CC-eEEEecCCc-eEEEcHHH
Confidence 8898776543 22211101 11112122344444 45 466677788 66777654
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=7.1e-10 Score=138.41 Aligned_cols=535 Identities=8% Similarity=0.024 Sum_probs=318.4
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 426 (1130)
...|.++...++|. |-.|+.+ -+..||..+++...- ... .......|.++...++|++.+.
T Consensus 87 ~n~I~~i~~d~~g~--lWigT~~-Gl~~yd~~~~~f~~~------~~~----------~~~~~~~i~~i~~d~~g~lwi~ 147 (795)
T 4a2l_A 87 NDISRIVKTDSQGR--VWIGTRD-GLSRYDEEKDIFQNF------FYE----------KNGKHLQVNGIEEISPEQLLIS 147 (795)
T ss_dssp CSCEEEEEECTTSC--EEEEESS-CEEEEETTTTEEEEE------CCE----------ETTEECCCCEEEEEETTEEEEE
T ss_pred ccceeEEEECCCCC--EEEEeCC-chheeCCCCCeEEec------ccc----------ccCCCceEEEEEECCCCCEEEE
Confidence 35799999999997 3345554 489999887654321 000 0000011888988888876664
Q ss_pred EeCCCeEEEEEecCCccceeeeeeecC-CCC-eeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEe-cCCCcCEEE
Q 001184 427 AFTKHLIHLYTYQGSNDLCQSLEIDAH-VGG-VNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQF-EGHEAPVYS 502 (1130)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~h-~~~-V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~-~~h~~~v~~ 502 (1130)
. . +-|..||.++++... . ..++ ... |.++...+++. +.+ ++.++.+..|| .+++..... ..+...|.+
T Consensus 148 t-~-~gl~~~~~~~~~~~~-~--~~~~~~~~~i~~i~~d~~g~--lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~ 219 (795)
T 4a2l_A 148 T-P-EGLIMFDIKESKFID-D--SFSTAMHKTIASTLYRQGDQ--IYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQA 219 (795)
T ss_dssp E-T-TEEEEEETTTTEEEC-S--SSCHHHHTCCEEEEEEETTE--EEE-EESSSCEEEEETTTCCEEECC----CCCEEE
T ss_pred E-C-CceEEEECCCCEEEe-c--cCCCCCCcceEEEEECCCCC--EEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEE
Confidence 4 4 448899987654221 1 0011 123 88888888886 333 55555688899 444433221 123456777
Q ss_pred EeecccCCccEEEEEecCCcEEEEEccCCcceeeec-------CCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC
Q 001184 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD-------APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1130)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1130)
+.... ++ .|..++.++.+..||..+........ .....|.++...++|...+... . -|.+||..
T Consensus 220 i~~d~--~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-----~-Gl~~~~~~ 290 (795)
T 4a2l_A 220 ILQQS--PT-RIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-----N-DLNIYHEG 290 (795)
T ss_dssp EEEEE--TT-EEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-----S-CEEEEETT
T ss_pred EEEcC--CC-CEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC-----C-hhheEcCC
Confidence 76543 33 45566666568889876654332211 1234699999999888666542 3 58899987
Q ss_pred CCceeEEEec------ccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEecc----CCCCCcceEEEcCCCC
Q 001184 576 EGALKRTYIG------FRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE----GGLPSLPRLRFNKEGN 645 (1130)
Q Consensus 576 ~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----~~~~~i~~v~~s~~~~ 645 (1130)
+++....... .....|.++...++|. |..|+.++-|..|+..++......... -....|.++...++|.
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~ 369 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN 369 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC
Confidence 7654432211 1223688888888876 556777788999987665432221111 0123578888888887
Q ss_pred EEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccc
Q 001184 646 LLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAA 725 (1130)
Q Consensus 646 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1130)
|.+|+.++-|..|+..++. +..+.. .+.
T Consensus 370 -lWiGt~~~Gl~~~~~~~~~--~~~~~~-----------------------~~~-------------------------- 397 (795)
T 4a2l_A 370 -LWIGTNDGGLNLYNPITQR--FTSYTL-----------------------QED-------------------------- 397 (795)
T ss_dssp -EEEEESSSCEEEECTTTCC--EEEECC-----------------------C----------------------------
T ss_pred -EEEEECCCCeEEEcCCCCc--EEEEec-----------------------CCC--------------------------
Confidence 4557777778888865441 000000 000
Q ss_pred cCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCc
Q 001184 726 RGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSG 805 (1130)
Q Consensus 726 ~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~ 805 (1130)
+ +...-....|.++...++|..|.+++.++-+..|+...+...
T Consensus 398 -------------~---------------------~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~--- 440 (795)
T 4a2l_A 398 -------------E---------------------SARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVE--- 440 (795)
T ss_dssp --------------------------------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEE---
T ss_pred -------------C---------------------cccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEE---
Confidence 0 000002356788888888874666666666777764432110
Q ss_pred ccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEeC------CCCCeEE
Q 001184 806 KATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMS------PPPASTF 879 (1130)
Q Consensus 806 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~------~~~~i~~ 879 (1130)
.+.... .......|.++...++|.+.+... +.|.+||..+++....... ....|.+
T Consensus 441 ---------~~~~~~--------~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 502 (795)
T 4a2l_A 441 ---------NFNQRN--------SQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITT 502 (795)
T ss_dssp ---------EECTTT--------SCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEE
T ss_pred ---------EeecCC--------CCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEE
Confidence 000000 001345789999999998776655 5689999988765433211 2356899
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEe-------cCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCccc
Q 001184 880 LAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLK-------GHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKR 952 (1130)
Q Consensus 880 l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-------~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~ 952 (1130)
+...+ ++.+.+ |+. +-|..|+..+++. .+. .....|.++...++|...++.. . -|..||..+++..
T Consensus 503 i~~d~-~g~lWi-gt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~ 575 (795)
T 4a2l_A 503 LFRDS-HKRLWI-GGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIK 575 (795)
T ss_dssp EEECT-TCCEEE-EES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEE
T ss_pred EEECC-CCCEEE-EeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEE
Confidence 99888 676665 444 4589999988776 332 1345789999999988666544 3 4888998764321
Q ss_pred ceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCC-CCCe--EEEEECCCCCEEEEEeC
Q 001184 953 KSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVL-SSPI--SSAAYSCNSQLIYATFT 1029 (1130)
Q Consensus 953 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~-~~~v--~~v~~s~dg~~l~t~~~ 1029 (1130)
......+-....+.++...++|.+.+++ ++.+..|+..+++.. .+....+. ...+ .++...++|.+++ |+.
T Consensus 576 ---~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~~Gl~~~~~~~~~~~-~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~ 649 (795)
T 4a2l_A 576 ---RYNTTNGLPNNVVYGILEDSFGRLWLST-NRGISCFNPETEKFR-NFTESDGLQSNQFNTASYCRTSVGQMYF-GGI 649 (795)
T ss_dssp ---EECGGGTCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEE-EECGGGTCSCSCEEEEEEEECTTSCEEE-EET
T ss_pred ---EeCCCCCCchhheEEEEECCCCCEEEEc-CCceEEEcCCCCcEE-EcCCcCCCccccCccCceeECCCCeEEE-ecC
Confidence 1112222223568889999999877776 567888998876543 33332221 2233 5777888998665 555
Q ss_pred CCcEEEEeCC
Q 001184 1030 DGSIGVFDAD 1039 (1130)
Q Consensus 1030 Dg~i~vwd~~ 1039 (1130)
+|. ..++.+
T Consensus 650 ~Gl-~~~~p~ 658 (795)
T 4a2l_A 650 NGI-TTFRPE 658 (795)
T ss_dssp TEE-EEECGG
T ss_pred Cce-EEEcHH
Confidence 674 445543
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.4e-13 Score=166.32 Aligned_cols=248 Identities=9% Similarity=0.033 Sum_probs=173.4
Q ss_pred cCCCccEEEEEEcCCCCEEEEEeCCC-----eEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCc-
Q 001184 406 KDSSISVSRVAWSPDGNFIGVAFTKH-----LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL- 479 (1130)
Q Consensus 406 ~~h~~~V~~v~~spdg~~las~~~d~-----~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~- 479 (1130)
.+|...+..++|||||++||.+..++ .|++||+.+++.... .+.. ..+..++|+|||+ .|+.++.++.
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~~~--~~~~~~~wspDg~--~l~~~~~~~~~ 194 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLER--VKFSCMAWTHDGK--GMFYNAYPQQD 194 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEEE--ECSCCEEECTTSS--EEEEEECCCCS
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--cccC--cccceEEEEeCCC--EEEEEEECCcc
Confidence 35656789999999999999876543 899999999875542 2222 2367899999999 5676666655
Q ss_pred ---------------EEEEe-cCCC----eeeEecCCCcCEEEEeecccCCccEEEEEec-----CCcEEEEEccC----
Q 001184 480 ---------------IRVWD-LSGR----KLFQFEGHEAPVYSVCPHQKENIHFIFSTAV-----DGKIKAWLYDN---- 530 (1130)
Q Consensus 480 ---------------v~iwd-~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-----dg~i~vwd~~~---- 530 (1130)
|++|+ .++. .+.....|...+..+.|+ +++++|+..+. +..|.+||+.+
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~S--pDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 272 (710)
T 2xdw_A 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELS--DDGRYVLLSIREGCDPVNRLWYCDLQQESNG 272 (710)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC--TTSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEc--CCCCEEEEEEEccCCCccEEEEEECcccccc
Confidence 99999 4444 222223355567788775 56677777665 56899999986
Q ss_pred --Cc-ceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc--eeEEEecccC-ceeEEEEEcCCCCEEE
Q 001184 531 --VG-SRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA--LKRTYIGFRK-KSAGVVQFDTTRNRIL 604 (1130)
Q Consensus 531 --~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~-~~v~~~~~~~~~~~l~ 604 (1130)
+. ....+..+...+.. .|+++|+.|+..+........|++||+.++. ..+.+..+.. ..+..++|++++.+++
T Consensus 273 ~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 273 ITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp SCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred cCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence 32 34444444444444 5889999988876433336789999998775 2345555444 3677788887777788
Q ss_pred EEeCCCc--EEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEe----CCCcEEEEEcCCC
Q 001184 605 AAGEDNQ--IKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT----ADQGIKILANADG 664 (1130)
Q Consensus 605 ~~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~----~dg~i~iw~~~~~ 664 (1130)
+...++. |++|++.+++.+..+..+ ...+..+.++|++..++... ..+.+..||+.++
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 8888874 667787778777777655 33678889999987666442 3478999998776
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.58 E-value=6.7e-13 Score=147.37 Aligned_cols=272 Identities=11% Similarity=0.047 Sum_probs=183.3
Q ss_pred CCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEE
Q 001184 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1130)
Q Consensus 348 ~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 427 (1130)
..|.+++|+|++.. ++..+.++.++.|. ++... .+..+...+.+++|+|+|++++++
T Consensus 6 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~-------------------~~~~~~~~~~~~~~~~~g~l~~~~ 62 (333)
T 2dg1_A 6 QDLPTLFYSGKSNS-AVPIISESELQTIT---AEPWL-------------------EISKKGLQLEGLNFDRQGQLFLLD 62 (333)
T ss_dssp CCCCBCCSCGGGGC-SSCCCCGGGSCEEE---CEEEE-------------------EEESSCCCEEEEEECTTSCEEEEE
T ss_pred cccceeeecCCccc-eeEEeecccCcccc---cceeE-------------------EEeccCccccCcEECCCCCEEEEE
Confidence 35677888998874 66667788889992 33222 244566678999999999988888
Q ss_pred eCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCC----CcEEEEecCCCeee-Eec--CCCcCE
Q 001184 428 FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD----KLIRVWDLSGRKLF-QFE--GHEAPV 500 (1130)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d----~~v~iwd~~~~~~~-~~~--~h~~~v 500 (1130)
..++.|.+||..+++... ....+...+.+++|+++|+ ++++...+ +.|.+||..+..+. .+. .+...+
T Consensus 63 ~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 63 VFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp TTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred CCCCEEEEEeCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 889999999998876332 1224667899999999998 67776666 68999994443333 332 344578
Q ss_pred EEEeecccCCccEEEEEec------CCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeC
Q 001184 501 YSVCPHQKENIHFIFSTAV------DGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE 574 (1130)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1130)
.++++.+ ++.++++... .+.|..+|.+..... .+......+..++|+|+|+.++++.. .++.|++||.
T Consensus 138 ~~i~~d~--~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~ 211 (333)
T 2dg1_A 138 DDMVFDS--KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTET---TANRLHRIAL 211 (333)
T ss_dssp EEEEECT--TSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred cceEECC--CCCEEEEeccccccCCCceEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence 8888865 5566666543 244555554433322 22222234788999999997766542 2678999998
Q ss_pred CC-CceeEEE-----e-cccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCC----CCCcceEEEcCC
Q 001184 575 SE-GALKRTY-----I-GFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGG----LPSLPRLRFNKE 643 (1130)
Q Consensus 575 ~~-~~~~~~~-----~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~----~~~i~~v~~s~~ 643 (1130)
.+ +.....+ . .........++++++|+.+++...++.|.+||. .++.+..+..... ...+.+++|+|+
T Consensus 212 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~d 290 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPG 290 (333)
T ss_dssp CTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred cCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCC
Confidence 64 3333221 1 111125677999999998888778899999998 5666666654321 114789999999
Q ss_pred CCEEEEEeCCC
Q 001184 644 GNLLVVTTADQ 654 (1130)
Q Consensus 644 ~~~l~~~~~dg 654 (1130)
++.|++++.++
T Consensus 291 g~~L~v~~~~g 301 (333)
T 2dg1_A 291 TNQLIICSNDI 301 (333)
T ss_dssp SCEEEEEEECG
T ss_pred CCEEEEEeCcc
Confidence 87777666553
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-12 Score=141.88 Aligned_cols=242 Identities=7% Similarity=-0.002 Sum_probs=173.8
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
.+.....+++|+|+|+.+++++..++.|..||..++ .. .+..+...+.+++++|||+++
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~--------------------~~~~~~~~~~~l~~~~dg~l~ 83 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LS--------------------PEMHPSHHQNGHCLNKQGHLI 83 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EE--------------------EEESSCSSEEEEEECTTCCEE
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eE--------------------EEECCCCCcceeeECCCCcEE
Confidence 466778999999999877889999999999999877 32 233566789999999999988
Q ss_pred EEEeCCCeEEEEEecCCccceeeeeeec-CCCCeeEEEEecCCCceEEEEE----c-------------CCCcEEEEecC
Q 001184 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDA-HVGGVNDLAFSYPNKQLCIVTC----G-------------DDKLIRVWDLS 486 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~-h~~~V~~i~~s~d~~~l~l~s~----s-------------~d~~v~iwd~~ 486 (1130)
++...++.|.+||..+++.........+ ....+.+++++|+|+ ++++. + ..+.|..++..
T Consensus 84 v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (296)
T 3e5z_A 84 ACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD 161 (296)
T ss_dssp EEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT
T ss_pred EEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEECCC
Confidence 8877778999999988764321111111 123577899999998 67763 2 13456666644
Q ss_pred CCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccC-Ccc---eeeecCCCccEEEEEEecCCCeEEEeeec
Q 001184 487 GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN-VGS---RVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 487 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
++ +..+..+......++|++ +++.+++.+.++.|.+|+++. +.. ...+......+..++++++|+.+++.
T Consensus 162 g~-~~~~~~~~~~~~gi~~s~--dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--- 235 (296)
T 3e5z_A 162 GT-LSAPIRDRVKPNGLAFLP--SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--- 235 (296)
T ss_dssp SC-EEEEECCCSSEEEEEECT--TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE---
T ss_pred CC-EEEeecCCCCCccEEECC--CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc---
Confidence 44 445556677788999854 556777778889999999973 322 12223334456789999999876665
Q ss_pred CCCCcEEEEeeCCCCceeEEEecccCceeEEEEE-cCCCCEEEEEeCCCcEEEEeCCCCce
Q 001184 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQF-DTTRNRILAAGEDNQIKFWDMDNVNM 622 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~vwd~~~~~~ 622 (1130)
.+.|.+||.. ++.+..+..+.. +.+++| +|+++.|++++.+ .+..++..+.+.
T Consensus 236 ---~~~v~~~~~~-g~~~~~~~~~~~--~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 236 ---GDGVHVLTPD-GDELGRVLTPQT--TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp ---TTEEEEECTT-SCEEEEEECSSC--CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred ---CCeEEEECCC-CCEEEEEECCCC--ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 5679999976 777777776544 778888 5888889888875 466667766554
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.3e-13 Score=148.62 Aligned_cols=221 Identities=11% Similarity=0.115 Sum_probs=150.6
Q ss_pred CceeEEEEecCCCEEEEEe-C---Ce--EEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeC------------
Q 001184 834 DVVPCVALSKNDSYVMSAG-G---GK--VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGME------------ 895 (1130)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~-d---g~--i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~------------ 895 (1130)
..+..++|||||+.|+..+ + +. |.+|++.+++.......+. +..++|+| +++.|+.++.
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~ 135 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--IRSLEWNE-DSRKLLIVGFKRREDEDFIFED 135 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--EEEEEECT-TSSEEEEEEECCCC--------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--ccceeECC-CCCEEEEEEccCCCcCCcEEEc
Confidence 4577899999999998876 2 33 8888999888766655443 99999999 7777777653
Q ss_pred ---------------CCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCC-------cEEEEECCCCcccc
Q 001184 896 ---------------DSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDA-------QLIFWNTDTWEKRK 953 (1130)
Q Consensus 896 ---------------dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg-------~i~vwd~~~~~~~~ 953 (1130)
...|++||+.+++.+..+.. . .+..++|+||| ++++++.++ ...||.+++++..
T Consensus 136 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~- 211 (347)
T 2gop_A 136 DVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE- 211 (347)
T ss_dssp -CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE-
T ss_pred ccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE-
Confidence 25799999998887555554 3 78999999999 877776552 3455555543321
Q ss_pred eeeEeccCCCCCCCeEEEEEcCCCcEEEE-EcC--------CcEEEEECCCceeeeeeecCCCCCCCeEE-EEECCCCCE
Q 001184 954 SIAIQLPAGKLPVGETRVQFHSDQVRLLV-NHE--------TQLAIYDGSKMECIRQWVPQDVLSSPISS-AAYSCNSQL 1023 (1130)
Q Consensus 954 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d--------~~i~v~d~~~~~~~~~~~~~~~~~~~v~~-v~~s~dg~~ 1023 (1130)
. +.. . ..+..+ +|||++|+. +.+ ..|.+|| +++.......+ ...+.. +.|+ || +
T Consensus 212 ~--l~~--~---~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~---~~~~~~~~~~s-dg-~ 275 (347)
T 2gop_A 212 K--MFE--K---VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEV---DRGVGQAKIKD-GK-V 275 (347)
T ss_dssp E--EEE--E---ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTC---CSEEEEEEEET-TE-E
T ss_pred E--ecc--C---cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccC---CcccCCccEEc-Cc-E
Confidence 1 111 1 223333 999998876 322 3688888 55544333222 567876 9999 98 9
Q ss_pred EEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcE-EEEeCC
Q 001184 1024 IYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSV-KVIEPS 1093 (1130)
Q Consensus 1024 l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v-~vW~~~ 1093 (1130)
+++++.++.+++| +.+++....+. + ...+..+.|+| .++++++.++.. .+|.+.
T Consensus 276 ~~~~~~~~~~~l~-~~~g~~~~~~~----------~--~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 276 YFTLFEEGSVNLY-IWDGEIKPIAK----------G--RHWIMGFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEEETTEEEEE-EESSSEEEEEC----------S--SSEEEEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred EEEEecCCcEEEE-EcCCceEEEec----------C--CCeEEeeeeeC---cEEEEEcCCCChHHheEeC
Confidence 9999999999999 87665432221 1 12344577877 577777777765 788775
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.57 E-value=3.9e-12 Score=141.20 Aligned_cols=236 Identities=11% Similarity=0.034 Sum_probs=163.9
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
.+...+.+++|+|+|+ +++++..++.|.+||..+++... +...+...+.+++|+|||+++
T Consensus 42 ~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~-------------------~~~~~~~~~~~i~~~~dg~l~ 101 (333)
T 2dg1_A 42 KKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKR-------------------PFVSHKANPAAIKIHKDGRLF 101 (333)
T ss_dssp SSCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEE-------------------EEECSSSSEEEEEECTTSCEE
T ss_pred ccCccccCcEECCCCC-EEEEECCCCEEEEEeCCCCcEEE-------------------EeeCCCCCcceEEECCCCcEE
Confidence 4677889999999998 78888889999999998877543 122456789999999999988
Q ss_pred EEEeCC----CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcC------CCcEEEEecCCCeeeEec
Q 001184 425 GVAFTK----HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD------DKLIRVWDLSGRKLFQFE 494 (1130)
Q Consensus 425 as~~~d----~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~------d~~v~iwd~~~~~~~~~~ 494 (1130)
++...+ +.|.+||..++...... .-..+...+.+++++|+|+ ++++... .+.|..+|..+..+..+.
T Consensus 102 v~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 178 (333)
T 2dg1_A 102 VCYLGDFKSTGGIFAATENGDNLQDII-EDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPDFRTVTPII 178 (333)
T ss_dssp EEECTTSSSCCEEEEECTTSCSCEEEE-CSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTTSCCEEEEE
T ss_pred EEeCCCCCCCceEEEEeCCCCEEEEEE-ccCccCCcccceEECCCCC--EEEEeccccccCCCceEEEEeCCCCEEEEee
Confidence 887766 68999999887633211 1113456799999999998 5666553 356667774443344443
Q ss_pred CCCcCEEEEeecccCCccEE-EEEecCCcEEEEEccCC-cceee------ecCC-CccEEEEEEecCCCeEEEeeecCCC
Q 001184 495 GHEAPVYSVCPHQKENIHFI-FSTAVDGKIKAWLYDNV-GSRVD------YDAP-GLWCTTMLYSADGSRLFSCGTSKEG 565 (1130)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l-~s~s~dg~i~vwd~~~~-~~~~~------~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1130)
.+...+..++|++ ++..+ ++.+.++.|.+||++.. ..... .... ...+..++++++|+.+++...
T Consensus 179 ~~~~~~~~i~~~~--dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~---- 252 (333)
T 2dg1_A 179 QNISVANGIALST--DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG---- 252 (333)
T ss_dssp EEESSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET----
T ss_pred cCCCcccceEECC--CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcC----
Confidence 3445578888854 55544 45566889999999642 22111 1111 136788999999997776643
Q ss_pred CcEEEEeeCCCCceeEEEecccCc-----eeEEEEEcCCCCEEEEEeCCC
Q 001184 566 DSHLVEWNESEGALKRTYIGFRKK-----SAGVVQFDTTRNRILAAGEDN 610 (1130)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg 610 (1130)
++.|.+||. +++.+..+...... .+..++|+++++.|+.++.++
T Consensus 253 ~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 253 QGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp TTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 678999998 56666666543221 477889999988887766654
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-13 Score=149.43 Aligned_cols=244 Identities=12% Similarity=0.094 Sum_probs=176.7
Q ss_pred CceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEE
Q 001184 834 DVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK 912 (1130)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 912 (1130)
.....+++. ++++.++.. ++.|.+||..+++.+.++.. ......+++++ ++++.++...++.|.+||..+++....
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 445677774 344444444 79999999999999988863 46788999998 676555554899999999999998877
Q ss_pred EecCC-----CCeeEEEEccCCCeEEEEe--CCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEc-
Q 001184 913 LKGHQ-----KHITGLAFSTNLNILVSSG--SDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH- 984 (1130)
Q Consensus 913 l~~h~-----~~V~~l~~s~dg~~L~s~s--~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~- 984 (1130)
+.... .....+++ ++..|..++ .++.|.+||+.+++....... + .....++++|+|++++++.
T Consensus 121 i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~----g---~~p~~i~~~~dG~l~v~~~~ 191 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI----G---IQPTSLVMDKYNKMWTITDG 191 (328)
T ss_dssp EECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC----S---SCBCCCEECTTSEEEEEBCC
T ss_pred EEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc----C---CCccceEEcCCCCEEEEECC
Confidence 76433 14567788 445555554 488999999998765433221 2 2346788999999877743
Q ss_pred C----------CcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccc
Q 001184 985 E----------TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMS 1054 (1130)
Q Consensus 985 d----------~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~ 1054 (1130)
+ +.|.++|..+++....+.... ......++|+||+++|+++.. .|.+||..+++...... .+
T Consensus 192 ~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~----~~ 263 (328)
T 3dsm_A 192 GYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPF----LE 263 (328)
T ss_dssp BCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCS----BC
T ss_pred CccCCccccCCceEEEEECCCCeEEEEEecCC--CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeee----ec
Confidence 2 689999999999887765432 236789999999999988765 89999999888642111 11
Q ss_pred cCCCCCceeeeEEEEEcCCCCCEEEEE----eCCCcEEEEeCCCCccCCcccc
Q 001184 1055 QASPNSQTVFPLVVTSHPQEPNQLAVG----LTDGSVKVIEPSETERKWGVAV 1103 (1130)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~~~~~~~l~s~----~~Dg~v~vW~~~~~~~~w~~~~ 1103 (1130)
. ....+..++++|.++.++++. ..++.|.+||.. ++..|.+..
T Consensus 264 ~-----~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~ 310 (328)
T 3dsm_A 264 F-----RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV 310 (328)
T ss_dssp C-----CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred C-----CCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe
Confidence 0 113455688898778888887 778999999998 776666543
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-11 Score=133.83 Aligned_cols=282 Identities=9% Similarity=-0.035 Sum_probs=193.9
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
+...+.+++++|+|+ ++++...++.|.+||.. ++.... ....+...+.+++++++|++++
T Consensus 13 ~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~------------------~~~~~~~~~~~i~~~~~g~l~v 72 (299)
T 2z2n_A 13 QDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY------------------PLPTPDAKVMCLTISSDGEVWF 72 (299)
T ss_dssp SSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE------------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred cCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe------------------cCCcccCceeeEEECCCCCEEE
Confidence 457899999999998 56665557899999988 554320 1123456799999999999888
Q ss_pred EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeE-ecCCCcCEEEEe
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQ-FEGHEAPVYSVC 504 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~-~~~h~~~v~~~~ 504 (1130)
+...++.|..||.. ++ ... ..+......+.++++.++|+ ++++...++.|..||.+++.... ...+...+..++
T Consensus 73 ~~~~~~~i~~~~~~-g~-~~~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~ 147 (299)
T 2z2n_A 73 TENAANKIGRITKK-GI-IKE-YTLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFIT 147 (299)
T ss_dssp EETTTTEEEEECTT-SC-EEE-EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEE
T ss_pred eCCCCCeEEEECCC-Cc-EEE-EeCCCcCCCceeeEECCCCC--EEEEecCCceEEEECCCCCEEEecCCCCCCCCceEE
Confidence 87778899999976 33 221 12233456789999999998 77777778899999975554432 233456688888
Q ss_pred ecccCCccEEEEEecCCcEEEEEccCCccee-eecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEE
Q 001184 505 PHQKENIHFIFSTAVDGKIKAWLYDNVGSRV-DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1130)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1130)
+. +++.+.++...++.|..||. ++.... ........+..++++++|+..++... .+.|..||. +++.....
T Consensus 148 ~~--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----~~~i~~~~~-~g~~~~~~ 219 (299)
T 2z2n_A 148 LG--SDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII----GNKIGRITT-SGEITEFK 219 (299)
T ss_dssp EC--TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEEEE
T ss_pred Ec--CCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC----CceEEEECC-CCcEEEEE
Confidence 75 45567776666789999998 443332 23333456889999999986665532 678999998 66644321
Q ss_pred ecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001184 584 IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANAD 663 (1130)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 663 (1130)
.......+..++++++|+.+++...++.|.+||. +++ +..+....+...+.++++ +++.+.++.. .+.+..++..+
T Consensus 220 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 220 IPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred CCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence 2212236778999999986666657889999998 454 334433333346889999 8888666554 56677777654
Q ss_pred C
Q 001184 664 G 664 (1130)
Q Consensus 664 ~ 664 (1130)
+
T Consensus 296 ~ 296 (299)
T 2z2n_A 296 D 296 (299)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=7.9e-13 Score=163.03 Aligned_cols=248 Identities=10% Similarity=-0.019 Sum_probs=169.7
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcC----eEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCC
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDG----EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 421 (1130)
|...+..++|||||++++++.+.+| .|++||+.+|+.... .+.. ..+..++|||||
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~------------------~~~~--~~~~~~~wspDg 182 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD------------------VLER--VKFSCMAWTHDG 182 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE------------------EEEE--ECSCCEEECTTS
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc------------------cccC--cccceEEEEeCC
Confidence 4447889999999996444444333 899999999887541 1111 126679999999
Q ss_pred CEEEEEeCCCe----------------EEEEEecCCccce-eeeeeecCCCCeeEEEEecCCCceEEEEEcC-----CCc
Q 001184 422 NFIGVAFTKHL----------------IHLYTYQGSNDLC-QSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD-----DKL 479 (1130)
Q Consensus 422 ~~las~~~d~~----------------i~vwd~~~~~~~~-~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~-----d~~ 479 (1130)
+.|+.++.++. |++|++.++.... .......|...+..++|+|||+. |+.++. +..
T Consensus 183 ~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~~ 260 (710)
T 2xdw_A 183 KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVNR 260 (710)
T ss_dssp SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCCE
T ss_pred CEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCccE
Confidence 99999988766 9999998875321 11122335666889999999995 444332 678
Q ss_pred EEEEe-cC------CC-eeeEecCCCcCEEEEeecccCCccEEEEEecC----CcEEEEEccCCcc--eeeecCCCc--c
Q 001184 480 IRVWD-LS------GR-KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD----GKIKAWLYDNVGS--RVDYDAPGL--W 543 (1130)
Q Consensus 480 v~iwd-~~------~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~--~~~~~~~~~--~ 543 (1130)
|++|| .+ +. ....+..+...+... |++ ++..|+..+.+ +.|.+||+.+... ...+..+.. .
T Consensus 261 l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 337 (710)
T 2xdw_A 261 LWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDV 337 (710)
T ss_dssp EEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE
T ss_pred EEEEECcccccccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCe
Confidence 99999 44 33 466677676666553 544 44555555443 3699999987642 233333333 6
Q ss_pred EEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEe----CCCcEEEEeCCC
Q 001184 544 CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG----EDNQIKFWDMDN 619 (1130)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~vwd~~~ 619 (1130)
+..+.|++++.++++... ++...|++|++.+++.++.+..+ ...+..+.++|+++.++... ..+.|+.||+.+
T Consensus 338 ~~~~~~~~~~~lv~~~~~--~g~~~l~~~~~~~g~~~~~l~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 338 LEWVACVRSNFLVLCYLH--DVKNTLQLHDLATGALLKIFPLE-VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp EEEEEEETTTEEEEEEEE--TTEEEEEEEETTTCCEEEEECCC-SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred EEEEEEEcCCEEEEEEEE--CCEEEEEEEECCCCCEEEecCCC-CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 888999877666666654 33457888998788877777765 44778889999987666432 357899999988
Q ss_pred Cc
Q 001184 620 VN 621 (1130)
Q Consensus 620 ~~ 621 (1130)
++
T Consensus 415 g~ 416 (710)
T 2xdw_A 415 EE 416 (710)
T ss_dssp SS
T ss_pred Cc
Confidence 77
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.5e-08 Score=124.16 Aligned_cols=595 Identities=12% Similarity=0.108 Sum_probs=335.5
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 426 (1130)
...|+++.-.++|. |=.|+.+| +..||-.+ |+.+.... .... ...-....|.++.-.++|+.|-+
T Consensus 18 ~n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~--------f~~~~~~~-~~~~---~~~l~~n~I~~i~~d~~g~~lWi 82 (781)
T 3v9f_A 18 NNYVLSITQDKQGF--LWFATEEG-LNKFDGTR--------FITYYKEE-QSSS---VQSITGNELNEVYTDPVQPVIWI 82 (781)
T ss_dssp CSBEEEEEECTTSC--EEEEESSC-EEEECSSS--------EEEECCCS-SCSS---SCCCSCSCEEEEEECSSSSEEEE
T ss_pred cCEeEEEEECCCCC--EEEccCCc-CccccCCc--------eEEEEcCC-CCCc---cccccccccceEEEcCCCCEEEE
Confidence 45899999999995 45566666 66677432 22221100 0000 00011346999999999984555
Q ss_pred EeCCCeEEEEEecCCccceeeee-eec---CCCCeeEEEEec--CCCceEEEEEcCCCcEEEEecCCCeeeEecC-----
Q 001184 427 AFTKHLIHLYTYQGSNDLCQSLE-IDA---HVGGVNDLAFSY--PNKQLCIVTCGDDKLIRVWDLSGRKLFQFEG----- 495 (1130)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~-~~~---h~~~V~~i~~s~--d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~----- 495 (1130)
|+.++-+..||..+++....... ... ....|.++.... ++. +..++.++.+..+|........+..
T Consensus 83 gt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~ 159 (781)
T 3v9f_A 83 ATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTHYNKSTVPA 159 (781)
T ss_dssp EESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEEESTTTCTT
T ss_pred EeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEeeccCcccC
Confidence 77774599999887542211000 000 123588888877 665 3445445568889944444444421
Q ss_pred -CCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeee-------cCCCccEEEEEEecCCCeEEEeeecCCCCc
Q 001184 496 -HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY-------DAPGLWCTTMLYSADGSRLFSCGTSKEGDS 567 (1130)
Q Consensus 496 -h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 567 (1130)
....|.++.... ++ .|..++.++.+..||..+....... ......|.++...++|++.+.. .+
T Consensus 160 l~~~~i~~i~~d~--~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt------~~ 230 (781)
T 3v9f_A 160 LPSEQTWTATEAE--DG-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGT------SK 230 (781)
T ss_dssp CSCCCEEEEEEEE--TT-EEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEE------TT
T ss_pred CCccceEEEEECC--CC-CEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEe------CC
Confidence 134577776532 33 4566777767888887665432211 0123468899988888876654 23
Q ss_pred EEEEeeCCCCceeEEEec------ccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEe-------cc-----
Q 001184 568 HLVEWNESEGALKRTYIG------FRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTE-------AE----- 629 (1130)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------~~----- 629 (1130)
-|.+||..+++....... .....|.++...++|. |..|+..+-|.++|..++....... ..
T Consensus 231 Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 309 (781)
T 3v9f_A 231 GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYS 309 (781)
T ss_dssp EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTS
T ss_pred cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCC
Confidence 689999877654332211 1233578888777664 5666665678999988765432221 10
Q ss_pred CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCC
Q 001184 630 GGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRS 709 (1130)
Q Consensus 630 ~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~ 709 (1130)
-....|.++...++|. |-+|+.++-|..++..... +..+.. .+.
T Consensus 310 l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~--~~~~~~-----------------------~~~---------- 353 (781)
T 3v9f_A 310 LSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPT--FHTWSY-----------------------SPT---------- 353 (781)
T ss_dssp BSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCS--CEEEC-------------------------------------
T ss_pred CCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCc--ceeecc-----------------------Ccc----------
Confidence 1123578888888886 5557767777777754431 100000 000
Q ss_pred CCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCC
Q 001184 710 SPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNG 789 (1130)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 789 (1130)
. . .........|.++...++|. |.+++.++
T Consensus 354 -----------------------------~--------~------------~~~~l~~~~v~~i~~d~~g~-lWigt~~~ 383 (781)
T 3v9f_A 354 -----------------------------Q--------M------------NESSLSNKVVSSVCDDGQGK-LWIGTDGG 383 (781)
T ss_dssp -----------------------------C--------C------------CSSCCSSSCEEEEEECTTSC-EEEEEBSS
T ss_pred -----------------------------c--------c------------ccCCCCCcceEEEEEcCCCC-EEEEeCCC
Confidence 0 0 00001234577788777776 44555555
Q ss_pred eEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEE
Q 001184 790 VQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTT 869 (1130)
Q Consensus 790 ~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~ 869 (1130)
-+..|+...... ..+... .......|.+++..++|.+.+...++.|..+|..+++....
T Consensus 384 Gl~~~~~~~~~~------------~~~~~~---------~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~ 442 (781)
T 3v9f_A 384 GINVFENGKRVA------------IYNKEN---------RELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQII 442 (781)
T ss_dssp CEEEEETTEEEE------------ECC--------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEEC
T ss_pred cEEEEECCCCeE------------EEccCC---------CCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEe
Confidence 566665332110 000000 01235678999999888877754467899999887765432
Q ss_pred Ee--CCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecC-----CCCeeEEEEccCCCeEEEEeCCCcEE
Q 001184 870 FM--SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGH-----QKHITGLAFSTNLNILVSSGSDAQLI 942 (1130)
Q Consensus 870 ~~--~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h-----~~~V~~l~~s~dg~~L~s~s~Dg~i~ 942 (1130)
.. .....|.++...+ ++.+.+ |+. +-|..|+..+++........ ...|.++...++|...+....+| |.
T Consensus 443 ~~~~~~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~ 518 (781)
T 3v9f_A 443 ELEKNELLDVRVFYEDK-NKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VG 518 (781)
T ss_dssp CSTTTCCCCEEEEEECT-TSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EE
T ss_pred ccCCCCCCeEEEEEECC-CCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EE
Confidence 21 2346788888887 666554 555 45889998876543332222 35789999998887666443345 77
Q ss_pred EEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCC-CCCCeEEEEECCCC
Q 001184 943 FWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDV-LSSPISSAAYSCNS 1021 (1130)
Q Consensus 943 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~-~~~~v~~v~~s~dg 1021 (1130)
.||..+++... .....+-....|.++...++|.+.+++.+|-+..||..+++.. .+....+ ....|.++...++|
T Consensus 519 ~~~~~~~~~~~---~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g 594 (781)
T 3v9f_A 519 IYTPDMQLVRK---FNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQ-VFQRKEGLPNTHIRAISEDKNG 594 (781)
T ss_dssp EECTTCCEEEE---ECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCE-EECGGGTCSCCCCCEEEECSSS
T ss_pred EEeCCCCeEEE---ccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEE-EccccCCCCCceEEEEEECCCC
Confidence 78877643211 1111222235788999999999888776443388998776532 2322211 13468899999999
Q ss_pred CEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 001184 1022 QLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSET 1095 (1130)
Q Consensus 1022 ~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~ 1095 (1130)
.+.++ +.+| |..|+..+++.. .+....-+ .......-++...+ ++ .|..|+.+| +..++...-
T Consensus 595 ~lW~~-t~~G-l~~~~~~~~~~~-~~~~~dGl-----~~~~f~~~~~~~~~-~G-~l~~g~~~G-l~~f~p~~~ 657 (781)
T 3v9f_A 595 NIWAS-TNTG-ISCYITSKKCFY-TYDHSNNI-----PQGSFISGCVTKDH-NG-LIYFGSING-LCFFNPDIA 657 (781)
T ss_dssp CEEEE-CSSC-EEEEETTTTEEE-EECGGGTC-----CSSCEEEEEEEECT-TS-CEEEEETTE-EEEECSCCG
T ss_pred CEEEE-cCCc-eEEEECCCCceE-EecccCCc-----cccccccCceEECC-CC-EEEEECCCc-eEEEChhhc
Confidence 86665 4455 777888765532 22111100 11111122333333 45 466677788 667887643
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-12 Score=138.02 Aligned_cols=243 Identities=12% Similarity=0.070 Sum_probs=179.3
Q ss_pred EEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCC-ccEEEEEEcCCCCEEEEEeCCCeEEEEEecC
Q 001184 362 LLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSS-ISVSRVAWSPDGNFIGVAFTKHLIHLYTYQG 440 (1130)
Q Consensus 362 llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~spdg~~las~~~d~~i~vwd~~~ 440 (1130)
+|++++.++.|.+||.++|+.+.. +..+. ..+.+++++|||++|+ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 689999999999999999998652 23333 4688999999999998 34778999999 7
Q ss_pred CccceeeeeeecC-CCCeeEEEEecCCCceEEEEEcC-CCcEEEEecCCCeeeEecC------CCcCEEEEeecccCCcc
Q 001184 441 SNDLCQSLEIDAH-VGGVNDLAFSYPNKQLCIVTCGD-DKLIRVWDLSGRKLFQFEG------HEAPVYSVCPHQKENIH 512 (1130)
Q Consensus 441 ~~~~~~~~~~~~h-~~~V~~i~~s~d~~~l~l~s~s~-d~~v~iwd~~~~~~~~~~~------h~~~v~~~~~~~~~~~~ 512 (1130)
|+.+.. +..+ ...+.++.+.+||+ ++++.+. ++.|..+|.+|+.+..+.. +......+++ .++++
T Consensus 65 G~~~W~---~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G~ 137 (276)
T 3no2_A 65 GRELWN---IAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINK--NKKGN 137 (276)
T ss_dssp SCEEEE---EECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEE--CTTSC
T ss_pred CCEEEE---EcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceE--CCCCC
Confidence 775553 4433 34688999999999 7777776 7888888888988877652 1123333333 56778
Q ss_pred EEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccC----
Q 001184 513 FIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRK---- 588 (1130)
Q Consensus 513 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~---- 588 (1130)
++++...++.|..||.+ ++....+.... .+.++.+.++|+.++++.. .+.|..+|..+|+.+..+.....
T Consensus 138 ~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~~ 211 (276)
T 3no2_A 138 YLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGVQ 211 (276)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSCC
T ss_pred EEEEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCcc
Confidence 99999999999999998 77777776543 4556788899999988764 66899999999999998874321
Q ss_pred -ceeEEEEEcCCCCEEEEEeCC--------CcEEEEeC-CCCceeEEEeccCCCCCcceEE
Q 001184 589 -KSAGVVQFDTTRNRILAAGED--------NQIKFWDM-DNVNMLTSTEAEGGLPSLPRLR 639 (1130)
Q Consensus 589 -~~v~~~~~~~~~~~l~~~~~d--------g~i~vwd~-~~~~~~~~~~~~~~~~~i~~v~ 639 (1130)
..+..+...++|+.+++.... +..+++.+ .+++.+..+........+..++
T Consensus 212 l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 212 LFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp CSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred ccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 136678888999888776421 13345555 4778887777666655666653
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.7e-13 Score=164.50 Aligned_cols=247 Identities=11% Similarity=-0.038 Sum_probs=163.4
Q ss_pred cCCCccEEEEEEcCCCCEEEEE-----eCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCc-
Q 001184 406 KDSSISVSRVAWSPDGNFIGVA-----FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL- 479 (1130)
Q Consensus 406 ~~h~~~V~~v~~spdg~~las~-----~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~- 479 (1130)
.+|...+.+++|||||++||.+ +.+.+|++||+.+++.+.. ..+... ....++|+|||+ .|+.++.|..
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~~--~~~~~~wspDg~--~l~~~~~d~~~ 191 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-DVIEGG--KYATPKWTPDSK--GFYYEWLPTDP 191 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-CCBSCC--TTCCCEECTTSS--EEEEEECCCCT
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-cccCcc--cccceEEecCCC--EEEEEEecCCC
Confidence 3667789999999999999944 4457899999999875411 012111 126899999999 6777777665
Q ss_pred ------------EEEEe-cCCC----eeeEecCCCcCEEEEeecccCCccEEEEEecCC----cEEEEEccCCcceeeec
Q 001184 480 ------------IRVWD-LSGR----KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDG----KIKAWLYDNVGSRVDYD 538 (1130)
Q Consensus 480 ------------v~iwd-~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg----~i~vwd~~~~~~~~~~~ 538 (1130)
|++|+ .++. .+.....|...+.++.|++ +|++|+.++.++ .|.+|+..++. ...+.
T Consensus 192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~ 268 (695)
T 2bkl_A 192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR--DGKYLFVYILRGWSENDVYWKRPGEKD-FRLLV 268 (695)
T ss_dssp TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT--TSCCEEEEEEETTTEEEEEEECTTCSS-CEEEE
T ss_pred CCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC--CCCEEEEEEeCCCCceEEEEEcCCCCc-eEEee
Confidence 99999 5444 3333445566788888854 557777776655 56666544333 33333
Q ss_pred CCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCce--eEEEeccc-CceeEEEEEcCCCCEEEEEeCCCcEEEE
Q 001184 539 APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL--KRTYIGFR-KKSAGVVQFDTTRNRILAAGEDNQIKFW 615 (1130)
Q Consensus 539 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~vw 615 (1130)
.+...+....+ ++|. ++..+.....++.|++||+.++.. ...+..+. ...+..++++ ++..+++...|+..++|
T Consensus 269 ~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 345 (695)
T 2bkl_A 269 KGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVR 345 (695)
T ss_dssp ECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred cCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 34444455555 6777 655543222468999999987753 23444333 4467778887 66778888889988887
Q ss_pred eCC-CCceeEEEeccCCCCCcceEEEcCCCCEEEEEeC----CCcEEEEEcCCC
Q 001184 616 DMD-NVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTA----DQGIKILANADG 664 (1130)
Q Consensus 616 d~~-~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~ 664 (1130)
.+. .++....+..+. ...+..++++|++..++.... .+.|++||+.++
T Consensus 346 ~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g 398 (695)
T 2bkl_A 346 VATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG 398 (695)
T ss_dssp EEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 654 355555554432 235677889999887774433 468999998776
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-13 Score=167.33 Aligned_cols=249 Identities=10% Similarity=-0.073 Sum_probs=162.1
Q ss_pred CCCCEEEEEEecCCCeEEEEEe----CcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCC
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGC----GDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 421 (1130)
|...+.+++|||||++++++.+ .+..|++||+.+|+.+... .+... ....++|||||
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-----------------~~~~~--~~~~~~wspDg 179 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-----------------VIEGG--KYATPKWTPDS 179 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-----------------CBSCC--TTCCCEECTTS
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-----------------ccCcc--cccceEEecCC
Confidence 5567999999999997544433 3467999999998865100 01111 12579999999
Q ss_pred CEEEEEeCCCe-------------EEEEEecCCccc-eeeeeeecCCCCeeEEEEecCCCceEEEEEcCCC----cEEEE
Q 001184 422 NFIGVAFTKHL-------------IHLYTYQGSNDL-CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK----LIRVW 483 (1130)
Q Consensus 422 ~~las~~~d~~-------------i~vwd~~~~~~~-~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~----~v~iw 483 (1130)
+.|+.++.|.. |++|++.++... ........|...+..++|+|||+. |+.++.++ .|.+|
T Consensus 180 ~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~~~ 257 (695)
T 2bkl_A 180 KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVYWK 257 (695)
T ss_dssp SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEEEE
T ss_pred CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEEEE
Confidence 99999988776 999999887632 122233446678999999999995 45444444 67777
Q ss_pred ecCCCeeeEecCCCcCEEEEeecccCCccEEEEEe---cCCcEEEEEccCCcc---eeeecCC-CccEEEEEEecCCCeE
Q 001184 484 DLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA---VDGKIKAWLYDNVGS---RVDYDAP-GLWCTTMLYSADGSRL 556 (1130)
Q Consensus 484 d~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~---~~~~~~~-~~~v~~~~~s~~~~~l 556 (1130)
|..+.....+..+...+....+ + ++.+++... .++.|.+||+++... ...+..+ ...+..++++ ++..+
T Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~-~--~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv 333 (695)
T 2bkl_A 258 RPGEKDFRLLVKGVGAKYEVHA-W--KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLS 333 (695)
T ss_dssp CTTCSSCEEEEECSSCCEEEEE-E--TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEE
T ss_pred cCCCCceEEeecCCCceEEEEe-c--CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEE
Confidence 7433345556556666666555 2 334444443 257899999987653 2233322 4467888888 56666
Q ss_pred EEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEe----CCCcEEEEeCCCCce
Q 001184 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG----EDNQIKFWDMDNVNM 622 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~vwd~~~~~~ 622 (1130)
++... ++...|++++.. ++..+.+..+....+..+.++|+++.++... ..+.|++||+.+++.
T Consensus 334 ~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 334 LEYLK--DATSEVRVATLK-GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEE--TTEEEEEEEETT-CCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEE--CCEEEEEEEeCC-CCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 66554 223445555543 5555555544344677788899988776433 347899999998874
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-12 Score=140.86 Aligned_cols=238 Identities=12% Similarity=0.056 Sum_probs=166.1
Q ss_pred ecCCCccEEEEEEcCCCC-EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 405 VKDSSISVSRVAWSPDGN-FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 405 ~~~h~~~V~~v~~spdg~-~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
+..+.....+++|+|+|+ +++++..++.|..||..++ .. .+..+...+.+++|+++|+ ++++...++.|.+|
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQ 95 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEE
Confidence 445566788999999998 7788888999999999886 33 3456777899999999999 77777778999999
Q ss_pred e-cCCCeeeEecCC----CcCEEEEeecccCCccEEEEEecC---------------CcEEEEEccCCcceeeecCCCcc
Q 001184 484 D-LSGRKLFQFEGH----EAPVYSVCPHQKENIHFIFSTAVD---------------GKIKAWLYDNVGSRVDYDAPGLW 543 (1130)
Q Consensus 484 d-~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~l~s~s~d---------------g~i~vwd~~~~~~~~~~~~~~~~ 543 (1130)
| .+++........ ...+..+++. ++|.++++.+.. +.-.+|.++.......+......
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d--~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~ 173 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCLA--PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVK 173 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEEC--TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSS
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEEC--CCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecCCCC
Confidence 9 577754433221 1245567775 466777773211 11244444433444444445556
Q ss_pred EEEEEEecCCCeEEEeeecCCCCcEEEEeeCC-CCce---eEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001184 544 CTTMLYSADGSRLFSCGTSKEGDSHLVEWNES-EGAL---KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1130)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 619 (1130)
...++|+|+|+.+++.. .++.|++|++. ++.. ...+ ......+..++++++|+.+++. ++.|.+||..
T Consensus 174 ~~gi~~s~dg~~lv~~~----~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~- 245 (296)
T 3e5z_A 174 PNGLAFLPSGNLLVSDT----GDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD- 245 (296)
T ss_dssp EEEEEECTTSCEEEEET----TTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-
T ss_pred CccEEECCCCCEEEEeC----CCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-
Confidence 78999999999984443 26799999986 5554 3344 2233345679999999866655 7899999986
Q ss_pred CceeEEEeccCCCCCcceEEE-cCCCCEEEEEeCCCcEEEEEcCC
Q 001184 620 VNMLTSTEAEGGLPSLPRLRF-NKEGNLLVVTTADQGIKILANAD 663 (1130)
Q Consensus 620 ~~~~~~~~~~~~~~~i~~v~~-s~~~~~l~~~~~dg~i~iw~~~~ 663 (1130)
++.+..+..+.. +.+++| +|+++.|++++.++ +.-++..+
T Consensus 246 g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 246 GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp SCEEEEEECSSC---CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 777777765543 788999 58999999988764 33334433
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.7e-11 Score=136.73 Aligned_cols=201 Identities=11% Similarity=0.034 Sum_probs=142.7
Q ss_pred eEEEEecCCCEEEEEe---CCeEEEEECCCceeEEE-EeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEE
Q 001184 837 PCVALSKNDSYVMSAG---GGKVSLFNMMNFKVMTT-FMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK 912 (1130)
Q Consensus 837 ~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 912 (1130)
..++++|||++|+++. ++.|.++| .+++.+.. +.... ++.+.|.+.+.+++.+.||.+.+++. +++....
T Consensus 128 ~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~ 201 (373)
T 2mad_H 128 WMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA 201 (373)
T ss_pred cceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE
Confidence 4689999999998875 36799999 99998887 65322 24556645567777888999999999 8876643
Q ss_pred Ee-----cCCCCe-eEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEecc------CCCCCCCeEEEEEcCCCcEE
Q 001184 913 LK-----GHQKHI-TGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLP------AGKLPVGETRVQFHSDQVRL 980 (1130)
Q Consensus 913 l~-----~h~~~V-~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~------~~~~~~~v~~~~~s~d~~~l 980 (1130)
.. ....++ ....+.+++..++..+..+.+.+.|+.+............ ....+.....++++||+..+
T Consensus 202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~l 281 (373)
T 2mad_H 202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGI 281 (373)
T ss_pred EeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEE
Confidence 22 111222 3356777776666556788999999976432211111111 11112344558899999988
Q ss_pred EEEc-----------CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCC-EEEEEe-CCCcEEEEeCCCccccccc
Q 001184 981 LVNH-----------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQ-LIYATF-TDGSIGVFDADSLRLRCRI 1047 (1130)
Q Consensus 981 ~~~~-----------d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~t~~-~Dg~i~vwd~~~~~~~~~~ 1047 (1130)
.+.. .+.|.++|..+++.+..+... ....+++|+|||+ +++++. .++.|.|||..+++.+..+
T Consensus 282 yV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g----~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 282 YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG----HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC----CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 8742 257999999999999988654 3688999999999 777777 4899999999999988773
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-12 Score=138.87 Aligned_cols=251 Identities=10% Similarity=0.022 Sum_probs=184.8
Q ss_pred CCCEEEEEe-CCeEEEEECCCceeEEEEeCCC-CCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCC-CCe
Q 001184 844 NDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPP-PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQ-KHI 920 (1130)
Q Consensus 844 dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~V 920 (1130)
.+++|++++ ++.|.+||.++++.+.++..+. ..+.+++++| ++++++ +.++.|+.||. +++.+..+..+. ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 456777777 8999999999999999998766 5789999999 888888 45778999999 899998888753 578
Q ss_pred eEEEEccCCCeEEEEeC-CCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-cCCcEEEEECCCcee
Q 001184 921 TGLAFSTNLNILVSSGS-DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKMEC 998 (1130)
Q Consensus 921 ~~l~~s~dg~~L~s~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~~~~ 998 (1130)
.++.+.+||+++++.+. ++.|..+|. .++....................+++.++|.++++. .++.|..||.. |+.
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~ 157 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL 157 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence 89999999999999887 777777776 444333332211100111234456789999999885 58999999998 999
Q ss_pred eeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEE
Q 001184 999 IRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQL 1078 (1130)
Q Consensus 999 ~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 1078 (1130)
+..+... ....++.+.++|.++++++.+++|..+|..+|+.+.++..... + ......+..+...+ +++++
T Consensus 158 ~w~~~~~----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~-~----~~~l~~~~~~~~~~-~G~i~ 227 (276)
T 3no2_A 158 LNSVKLS----GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI-E----GVQLFFVAQLFPLQ-NGGLY 227 (276)
T ss_dssp EEEEECS----SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS-B----SCCCSEEEEEEECT-TSCEE
T ss_pred EEEEECC----CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC-C----CccccccccceEcC-CCCEE
Confidence 8888764 3456788899999999998888999999999999877752210 0 01123345566666 57777
Q ss_pred EEEeCC--------CcEEEEeC-CCCccCCcccccCCCCCC
Q 001184 1079 AVGLTD--------GSVKVIEP-SETERKWGVAVPVDNGTD 1110 (1130)
Q Consensus 1079 ~s~~~D--------g~v~vW~~-~~~~~~w~~~~p~~~~~~ 1110 (1130)
++.+.. +..++..+ .+++..|......+=|.+
T Consensus 228 v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~ 268 (276)
T 3no2_A 228 ICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMI 268 (276)
T ss_dssp EEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCC
T ss_pred EEeccCccccccccCCceEEEECCCCCEEEEecCcccccce
Confidence 776421 23456666 577778998888877777
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.2e-12 Score=138.34 Aligned_cols=239 Identities=9% Similarity=-0.040 Sum_probs=165.4
Q ss_pred CEEEEEEecCCCeEEE-EEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEE
Q 001184 349 SVVSMDFHPFHHTLLV-VGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1130)
Q Consensus 349 ~V~~v~fspdg~~lla-sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 427 (1130)
...+++++|+|+ +++ +.+.++.|.+||..++.... ....+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~-------------------~~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTV-------------------LPFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EE-------------------CCCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccce-------------------EeeCCcCCcceeEECCCCCEEEEc
Confidence 889999999997 666 54678899999976654321 111233467889999999966666
Q ss_pred eCCCeEEEEEecCCccceeeeeee-cCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEee
Q 001184 428 FTKHLIHLYTYQGSNDLCQSLEID-AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCP 505 (1130)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~~~~~-~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~ 505 (1130)
. ++.|.+||..+..... +. .....+.++++.++|+ ++++...++.|.+|+ .+.............+.++++
T Consensus 85 ~-~~~i~~~d~~~~~~~~----~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQTV----LPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCEE----CCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEee----eecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 8899999987654221 22 2335689999999998 777777788999998 433333222233345677887
Q ss_pred cccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEec
Q 001184 506 HQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG 585 (1130)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1130)
.+ ++.++++...++.|.+||.+..............+..++++++|+.+++... ++.|.+|+..+..... ...
T Consensus 158 ~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~----~~~v~~~~~~~~~~~~-~~~ 230 (270)
T 1rwi_B 158 DN--SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTTSTV-LPF 230 (270)
T ss_dssp CT--TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TSCEEEECTTCSCCEE-CCC
T ss_pred eC--CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECC----CCcEEEEcCCCCccee-ecc
Confidence 54 5567777777889999998765544332233356889999999966665532 6789999986654332 221
Q ss_pred ccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 001184 586 FRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN 621 (1130)
Q Consensus 586 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 621 (1130)
.....+..++++++|+.+++...++.|+++++...+
T Consensus 231 ~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 231 TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 122357889999999988888889999999987654
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=4.9e-12 Score=138.21 Aligned_cols=205 Identities=13% Similarity=0.119 Sum_probs=143.6
Q ss_pred eeEEEEecCCCEEEEEe---CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeec-CeEEE
Q 001184 836 VPCVALSKNDSYVMSAG---GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV-DEVKT 911 (1130)
Q Consensus 836 i~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~-~~~~~ 911 (1130)
...++|+|||+++.++. ++.|.++|+.+++.+.++.... + ...+.. +.+.+++.+.||++.+.++.+ ++...
T Consensus 139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~ 214 (386)
T 3sjl_D 139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEI 214 (386)
T ss_dssp GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecC-CCceeEEECCCCCEEEEECCCCCeEEE
Confidence 34689999999888775 4789999999999999986432 1 223333 566777888899998888876 56543
Q ss_pred EEecCC----CCee-EEEEc-cCCCeEEEEeCCCcEEEEECCCCcccceeeEe------ccCCCCCCCeEEEEEcCCCcE
Q 001184 912 KLKGHQ----KHIT-GLAFS-TNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQ------LPAGKLPVGETRVQFHSDQVR 979 (1130)
Q Consensus 912 ~l~~h~----~~V~-~l~~s-~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~------~~~~~~~~~v~~~~~s~d~~~ 979 (1130)
....+. .++. ..+|. ++|++++ .+.+|.|.+.|+.+.......... ...+-.+.....+++++++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~ 293 (386)
T 3sjl_D 215 THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR 293 (386)
T ss_dssp EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTE
T ss_pred eecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCe
Confidence 222121 2222 24664 6775544 666899999999775432111111 011112234456788999998
Q ss_pred EEEEc-----------CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCC-EEEEEe-CCCcEEEEeCCCcccccc
Q 001184 980 LLVNH-----------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQ-LIYATF-TDGSIGVFDADSLRLRCR 1046 (1130)
Q Consensus 980 l~~~~-----------d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~t~~-~Dg~i~vwd~~~~~~~~~ 1046 (1130)
+++.. .++|.++|+.+++.++.+... .++++++|++|++ +|+++. .++.|.|+|..+++.+..
T Consensus 294 lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg----~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~ 369 (386)
T 3sjl_D 294 IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG----HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS 369 (386)
T ss_dssp EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE----EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred EEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC----CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 88742 257999999999999998765 4788999999997 677655 489999999999999888
Q ss_pred cCC
Q 001184 1047 IAP 1049 (1130)
Q Consensus 1047 ~~~ 1049 (1130)
+..
T Consensus 370 i~~ 372 (386)
T 3sjl_D 370 VNQ 372 (386)
T ss_dssp ECC
T ss_pred ecC
Confidence 873
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.1e-12 Score=140.98 Aligned_cols=270 Identities=12% Similarity=0.005 Sum_probs=183.7
Q ss_pred CcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceee
Q 001184 368 GDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQS 447 (1130)
Q Consensus 368 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~ 447 (1130)
.+++|.+||.++++........ .. -.........+++. +++.+++...++.|.+||..+++.+..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~----~n---------~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~- 79 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYR----AN---------GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGR- 79 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHH----HH---------SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEE-
T ss_pred CCceEEEEECCCCEEhhhhHhh----hc---------CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEE-
Confidence 3789999999999876421000 00 01122346777774 455556666689999999999886553
Q ss_pred eeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCC-----cCEEEEeecccCCccEEEEEe-cC
Q 001184 448 LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHE-----APVYSVCPHQKENIHFIFSTA-VD 520 (1130)
Q Consensus 448 ~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~-----~~v~~~~~~~~~~~~~l~s~s-~d 520 (1130)
+. .......++++++++ +.++...++.|.+|| .+++....+.... .....+++ .++.++++.. .+
T Consensus 80 --i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~---~~~~lyv~~~~~~ 151 (328)
T 3dsm_A 80 --IT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ---YGKYVYVNCWSYQ 151 (328)
T ss_dssp --EE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE---ETTEEEEEECTTC
T ss_pred --cC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE---ECCEEEEEcCCCC
Confidence 33 345689999999985 566666899999999 6777666665332 14455665 2334444443 48
Q ss_pred CcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCC------CcEEEEeeCCCCceeEEEecccCceeEEE
Q 001184 521 GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEG------DSHLVEWNESEGALKRTYIGFRKKSAGVV 594 (1130)
Q Consensus 521 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~------~~~i~~wd~~~~~~~~~~~~~~~~~v~~~ 594 (1130)
+.|.+||..+.+....+... .....++++|+|++++++....+. .+.|.++|..+++....+..........+
T Consensus 152 ~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~l 230 (328)
T 3dsm_A 152 NRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEV 230 (328)
T ss_dssp CEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEE
T ss_pred CEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeE
Confidence 99999999988766665543 335688999999977766421000 27899999999988877764333357889
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcC-CCCEEEEE----eCCCcEEEEEcCCC
Q 001184 595 QFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK-EGNLLVVT----TADQGIKILANADG 664 (1130)
Q Consensus 595 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~-~~~~l~~~----~~dg~i~iw~~~~~ 664 (1130)
+++|++++++++.. .|.+||..+++................++++| ++.+.++. ..++.|.+|+.. +
T Consensus 231 a~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g 302 (328)
T 3dsm_A 231 QLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-G 302 (328)
T ss_dssp EECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-C
T ss_pred EEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-C
Confidence 99999999988765 89999998887542111111123578899999 55555555 568899999987 5
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-08 Score=125.38 Aligned_cols=539 Identities=11% Similarity=0.043 Sum_probs=309.8
Q ss_pred CCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC--CCCEEE
Q 001184 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP--DGNFIG 425 (1130)
Q Consensus 348 ~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~la 425 (1130)
..|.++...++|+. |-.|+.++-+..||..+++...- ..... . ...-....|.++...+ +|...+
T Consensus 66 n~I~~i~~d~~g~~-lWigt~~~Gl~~~d~~~~~f~~~------~~~~~----~--~~~l~~~~i~~i~~d~~~~g~lwi 132 (781)
T 3v9f_A 66 NELNEVYTDPVQPV-IWIATQRAGLNAYNYETQSFSVY------QYNPE----D--PQSLITNDVTHITSSVQAGKGLWV 132 (781)
T ss_dssp SCEEEEEECSSSSE-EEEEESSSCEEEEETTTTEEEEE------CCCTT----C--SSSCSCSCEEEEEECSSTTSEEEE
T ss_pred cccceEEEcCCCCE-EEEEeCCCCcceECCCCCeEEee------ccccC----C--CCCcccCcceEEEecCccCCCEEE
Confidence 46999999998862 34466675799999987664321 00000 0 0001123688998888 776544
Q ss_pred EEeCCCeEEEEEecCCccceeeee--ee-cCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecC-------
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLE--ID-AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEG------- 495 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~--~~-~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~------- 495 (1130)
++.++-|..||..+++... ... .. -....|.++...++|. |..+..++-+..||........+..
T Consensus 133 -~t~~~gl~~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 207 (781)
T 3v9f_A 133 -CTYYRGIEYLDIATGKFTH-YNKSTVPALPSEQTWTATEAEDGK---LYIGHVEGGLSILSLNDKSVKHFVHDPQNPNS 207 (781)
T ss_dssp -EESSSCEEEEETTTTEEEE-ESTTTCTTCSCCCEEEEEEEETTE---EEEEETTTEEEEEETTTTEEEEECC-------
T ss_pred -EECCCCeeEEECCCCeEEe-eccCcccCCCccceEEEEECCCCC---EEEEecCCCeEEEcCCCCceEeeecCCCCccc
Confidence 5534458889987654221 100 00 1134588888888876 3445555568889944443333321
Q ss_pred -CCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeec-------CCCccEEEEEEecCCCeEEEeeecCCCCc
Q 001184 496 -HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD-------APGLWCTTMLYSADGSRLFSCGTSKEGDS 567 (1130)
Q Consensus 496 -h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 567 (1130)
....|.++... .++. |..++.+ .+.+||..+........ .....|.++...++|...+... .+
T Consensus 208 l~~~~i~~i~~d--~~g~-lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-----~~ 278 (781)
T 3v9f_A 208 LPGNDVRCIYKD--TNGN-IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATE-----LN 278 (781)
T ss_dssp -CCSSEEEEEEC--TTCC-EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEES-----SS
T ss_pred CCCCceeEEEEc--CCCC-EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeC-----CC
Confidence 13467777653 3444 4455555 68888876543322111 1234689999888887665432 35
Q ss_pred EEEEeeCCCCceeEEEe-------------cccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEe-------
Q 001184 568 HLVEWNESEGALKRTYI-------------GFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTE------- 627 (1130)
Q Consensus 568 ~i~~wd~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~------- 627 (1130)
-|.++|..++....... +.....|.++....+|. |..|+.++-|..++..+........
T Consensus 279 Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 357 (781)
T 3v9f_A 279 GIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNE 357 (781)
T ss_dssp CEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCS
T ss_pred CeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCcccccc
Confidence 68889987665432211 11233688888888775 5667777789999987655333211
Q ss_pred ccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccC
Q 001184 628 AEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVD 707 (1130)
Q Consensus 628 ~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~ 707 (1130)
..-....|.++...++|. |.+|+.++-|..|+..++. ...+. +.
T Consensus 358 ~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~--~~~~~-------------------------~~-------- 401 (781)
T 3v9f_A 358 SSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRV--AIYNK-------------------------EN-------- 401 (781)
T ss_dssp SCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEE--EECC------------------------------------
T ss_pred CCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCe--EEEcc-------------------------CC--------
Confidence 011223578888888776 4556666668888764431 00000 00
Q ss_pred CCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeee
Q 001184 708 RSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWS 787 (1130)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~ 787 (1130)
. ......|.++...++|... +++.
T Consensus 402 -------------------------------~------------------------~~~~~~v~~i~~d~~g~lW-igt~ 425 (781)
T 3v9f_A 402 -------------------------------R------------------------ELLSNSVLCSLKDSEGNLW-FGTY 425 (781)
T ss_dssp ---------------------------------------------------------CCCSBEEEEEECTTSCEE-EEET
T ss_pred -------------------------------C------------------------CCCCcceEEEEECCCCCEE-EEec
Confidence 0 0023457777777777644 4554
Q ss_pred CCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeE
Q 001184 788 NGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVM 867 (1130)
Q Consensus 788 dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~ 867 (1130)
++-+..++... +..............|.+++..++|.+.+... +.|..||..+++..
T Consensus 426 ~~Gl~~~~~~~----------------------~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~ 482 (781)
T 3v9f_A 426 LGNISYYNTRL----------------------KKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVI 482 (781)
T ss_dssp TEEEEEECSSS----------------------CEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCC
T ss_pred cCCEEEEcCCC----------------------CcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEE
Confidence 45565554322 11111000011356788999988887666544 67999998876654
Q ss_pred EEEeCC-----CCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEec----CCCCeeEEEEccCCCeEEEEeCC
Q 001184 868 TTFMSP-----PPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKG----HQKHITGLAFSTNLNILVSSGSD 938 (1130)
Q Consensus 868 ~~~~~~-----~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~----h~~~V~~l~~s~dg~~L~s~s~D 938 (1130)
...... ...|.++...+ ++.+.+ |+.++-|..|+..+++.. .+.. ....|.++...++|...++.. +
T Consensus 483 ~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~ 558 (781)
T 3v9f_A 483 HHYDTSNSQLLENFVRSIAQDS-EGRFWI-GTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLATG-E 558 (781)
T ss_dssp EEECTTTSSCSCSCEEEEEECT-TCCEEE-EESSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEET-T
T ss_pred ecccCcccccccceeEEEEEcC-CCCEEE-EEcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEEC-C
Confidence 433222 35689999888 676654 555444778887766543 3321 235688999988887666544 6
Q ss_pred CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCC-C--CeEEE
Q 001184 939 AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLS-S--PISSA 1015 (1130)
Q Consensus 939 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~-~--~v~~v 1015 (1130)
|.+..||..+++.. ......+-....+.++...++|.+.+++. +.+..|+..+++. ..+....+.. . ...++
T Consensus 559 Glv~~~d~~~~~~~---~~~~~~gl~~~~i~~i~~d~~g~lW~~t~-~Gl~~~~~~~~~~-~~~~~~dGl~~~~f~~~~~ 633 (781)
T 3v9f_A 559 GLVCFPSARNFDYQ---VFQRKEGLPNTHIRAISEDKNGNIWASTN-TGISCYITSKKCF-YTYDHSNNIPQGSFISGCV 633 (781)
T ss_dssp EEEEESCTTTCCCE---EECGGGTCSCCCCCEEEECSSSCEEEECS-SCEEEEETTTTEE-EEECGGGTCCSSCEEEEEE
T ss_pred CceEEECCCCCcEE---EccccCCCCCceEEEEEECCCCCEEEEcC-CceEEEECCCCce-EEecccCCccccccccCce
Confidence 65488888765421 11112222224678899999998777654 4588888876654 3332221111 1 23577
Q ss_pred EECCCCCEEEEEeCCCcEEEEeCCC
Q 001184 1016 AYSCNSQLIYATFTDGSIGVFDADS 1040 (1130)
Q Consensus 1016 ~~s~dg~~l~t~~~Dg~i~vwd~~~ 1040 (1130)
...+||.+++ |+.+| +..++...
T Consensus 634 ~~~~~G~l~~-g~~~G-l~~f~p~~ 656 (781)
T 3v9f_A 634 TKDHNGLIYF-GSING-LCFFNPDI 656 (781)
T ss_dssp EECTTSCEEE-EETTE-EEEECSCC
T ss_pred EECCCCEEEE-ECCCc-eEEEChhh
Confidence 7788998666 55577 45566543
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.4e-11 Score=127.66 Aligned_cols=279 Identities=10% Similarity=-0.026 Sum_probs=191.3
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
....+.+++++++|+ +.++...++.|.+||.. ++.... .+..+...+.+++++++|++++
T Consensus 18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~------------------~~~~~~~~~~~i~~~~~g~l~v 77 (300)
T 2qc5_A 18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEF------------------EVPTPDAKVMCLIVSSLGDIWF 77 (300)
T ss_dssp TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEE------------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEE------------------ECCCCCCcceeEEECCCCCEEE
Confidence 456899999999998 56666678899999987 554320 1223346789999999999888
Q ss_pred EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeE-ecCCCcCEEEEe
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQ-FEGHEAPVYSVC 504 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~-~~~h~~~v~~~~ 504 (1130)
+...++.|..||.. ++.. ...+......+.++++.++|+ ++++...++.|..+|..++.... +......+..++
T Consensus 78 ~~~~~~~v~~~d~~-g~~~--~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~ 152 (300)
T 2qc5_A 78 TENGANKIGKLSKK-GGFT--EYPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFIT 152 (300)
T ss_dssp EETTTTEEEEECTT-SCEE--EEECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEE
T ss_pred EecCCCeEEEECCC-CCeE--EecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEE
Confidence 77778889999987 5432 122333446789999999998 67777778899999955665432 333456678888
Q ss_pred ecccCCccEEEEEecCCcEEEEEccCCccee-eecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEE
Q 001184 505 PHQKENIHFIFSTAVDGKIKAWLYDNVGSRV-DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1130)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1130)
+.+ ++.+.++...++.|..||. .+.... ........+..++++++|+..++... .+.|.+||. +++.....
T Consensus 153 ~d~--~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~----~~~i~~~~~-~g~~~~~~ 224 (300)
T 2qc5_A 153 LGS--DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM----GNKIGRITT-TGEISEYD 224 (300)
T ss_dssp ECT--TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEEEE
T ss_pred ECC--CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC----CCEEEEEcC-CCcEEEEE
Confidence 754 5566666666788999988 333222 22233456889999999976666532 568999998 55544332
Q ss_pred ecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 584 IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
.......+..++++++|+.+++...++.|..||. +++.. .+........+.+++++++|.+.++.. . .|..++.
T Consensus 225 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 225 IPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 2212335778999999986666666789999998 45433 333332334678999999998655544 4 6666654
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-10 Score=126.30 Aligned_cols=240 Identities=10% Similarity=0.049 Sum_probs=170.6
Q ss_pred cCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEec
Q 001184 406 KDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL 485 (1130)
Q Consensus 406 ~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~ 485 (1130)
..+...+.+++++++|+.+++...++.|.+||.. ++ +.. .....+...+.++++.++|. +.++...++.|..||.
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-~~~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~ 85 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GK-ITE-YPLPTPDAKVMCLTISSDGE--VWFTENAANKIGRITK 85 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEE-EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CC-eEE-ecCCcccCceeeEEECCCCC--EEEeCCCCCeEEEECC
Confidence 3455689999999999988877668899999988 54 221 12233456799999999998 6777777889999995
Q ss_pred CCCeeeEec--CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcce-eeecCCCccEEEEEEecCCCeEEEeeec
Q 001184 486 SGRKLFQFE--GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR-VDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 486 ~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
+++. ..+. .....+..+++. +++.++++...++.|..||. ++... .........+..+++.++|+.+++...
T Consensus 86 ~g~~-~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~- 160 (299)
T 2z2n_A 86 KGII-KEYTLPNPDSAPYGITEG--PNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ- 160 (299)
T ss_dssp TSCE-EEEECSSTTCCEEEEEEC--TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT-
T ss_pred CCcE-EEEeCCCcCCCceeeEEC--CCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC-
Confidence 5543 3332 345578888885 45567777777889999988 33322 223334456899999999987776532
Q ss_pred CCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcC
Q 001184 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~ 642 (1130)
.+.|..||. +++............+..++++++++.+++...++.|.+||. +++... +........+.++++++
T Consensus 161 ---~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~ 234 (299)
T 2z2n_A 161 ---NNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAITAGA 234 (299)
T ss_dssp ---TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECS
T ss_pred ---CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeEEECC
Confidence 678999998 666554322222335778999999987776667889999999 666433 33333334688999999
Q ss_pred CCCEEEEEeCCCcEEEEEc
Q 001184 643 EGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~ 661 (1130)
+|++.++...++.|..|+.
T Consensus 235 ~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 235 GIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp TTCEEEEETTTTEEEEEET
T ss_pred CCCEEEeccCCceEEEECC
Confidence 9986666657788999986
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=3.2e-11 Score=131.76 Aligned_cols=313 Identities=9% Similarity=-0.039 Sum_probs=198.3
Q ss_pred cccCCccEEEEEec-----CCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeec------CCCCcEEEEeeC
Q 001184 506 HQKENIHFIFSTAV-----DGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS------KEGDSHLVEWNE 574 (1130)
Q Consensus 506 ~~~~~~~~l~s~s~-----dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~------~~~~~~i~~wd~ 574 (1130)
.|.+++..++.... ++.|.+.|..+.+....+.....+ . ++++|||++++++... +..++.|.+||.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 34567777777765 679999999998887777655555 4 9999999999887520 012567999999
Q ss_pred CCCceeEEEeccc------CceeEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCE
Q 001184 575 SEGALKRTYIGFR------KKSAGVVQFDTTRNRILAAGE--DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNL 646 (1130)
Q Consensus 575 ~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~ 646 (1130)
.+++.+..+.-.. ......+.|+|||++++++.. ++.|.++|+.+++.+.++...+ ....+....+.
T Consensus 117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g-----~~~~~P~g~~~ 191 (386)
T 3sjl_D 117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-----CYHIFPTAPDT 191 (386)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-----EEEEEEEETTE
T ss_pred CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC-----cceeecCCCce
Confidence 9999988875321 113445889999999998864 6899999999999999886543 12233334567
Q ss_pred EEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCcccc
Q 001184 647 LVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAAR 726 (1130)
Q Consensus 647 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1130)
+++.+.||.+.+.++.+..+... ... . .+.++
T Consensus 192 ~~~~~~DG~~~~v~~~~~g~v~~---~~~-~-----------------~~~~~--------------------------- 223 (386)
T 3sjl_D 192 FFMHCRDGSLAKVAFGTEGTPEI---THT-E-----------------VFHPE--------------------------- 223 (386)
T ss_dssp EEEEETTSCEEEEECCSSSCCEE---EEC-C-----------------CCSCT---------------------------
T ss_pred eEEECCCCCEEEEECCCCCeEEE---eec-c-----------------eeccc---------------------------
Confidence 77888899998888865211100 000 0 00000
Q ss_pred CCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEe-ccCCeEEEeeeCCeEEeeecCCCCCCCCc
Q 001184 727 GIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYT-NSGIGILALWSNGVQKLWKWNRTEQNPSG 805 (1130)
Q Consensus 727 ~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~g~~l~~~~~dg~i~iw~~~~~~~~~~~ 805 (1130)
.........|. ++|+.++ .+.+|.+.+.|+.........
T Consensus 224 ---------------------------------------~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~ 263 (386)
T 3sjl_D 224 ---------------------------------------DEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLP 263 (386)
T ss_dssp ---------------------------------------TSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECC
T ss_pred ---------------------------------------cccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeec
Confidence 00000011333 4554333 445678877776443211110
Q ss_pred ccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-----------CCeEEEEECCCceeEEEEeCCC
Q 001184 806 KATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-----------GGKVSLFNMMNFKVMTTFMSPP 874 (1130)
Q Consensus 806 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-----------dg~i~iwd~~~~~~~~~~~~~~ 874 (1130)
-|++.+...+. .+-.......++++++++.+.+.. .++|.+.|+.+++.++++...
T Consensus 264 ---------~~~~~~~~~~~---~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg- 330 (386)
T 3sjl_D 264 ---------AVEALTEAERA---DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG- 330 (386)
T ss_dssp ---------CEESSCHHHHH---TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-
T ss_pred ---------ceecccccccc---ccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-
Confidence 01100000000 000112233577899999888763 146999999999999988743
Q ss_pred CCeEEEEEeCCCCc-EEEEE-eCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccC
Q 001184 875 PASTFLAFHPQDNN-IIAIG-MEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTN 928 (1130)
Q Consensus 875 ~~i~~l~~sp~~~~-~lasg-~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d 928 (1130)
..+..+++++ |++ +|+++ ..++.|.++|..+++.+.++..- +.-..|.+++|
T Consensus 331 ~~~~~lavs~-D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 331 HEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp EEECEEEECS-SSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred CCcceEEECC-CCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 3678999999 554 66665 45899999999999999888643 22345666665
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-11 Score=132.70 Aligned_cols=239 Identities=8% Similarity=-0.073 Sum_probs=166.6
Q ss_pred cEEEEEEcCCCCEEE-EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCe
Q 001184 411 SVSRVAWSPDGNFIG-VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRK 489 (1130)
Q Consensus 411 ~V~~v~~spdg~~la-s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~ 489 (1130)
...+++++++|++++ +.+.++.|.+||..++.... ....+...+.++++.++|+ ++++.. ++.|.+||..+..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~p~~i~~~~~g~--l~v~~~-~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV---LPFNGLYQPQGLAVDGAGT--VYVTDF-NNRVVTLAAGSNN 98 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE---CCCCSCCSCCCEEECTTCC--EEEEET-TTEEEEECTTCSC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce---EeeCCcCCcceeEECCCCC--EEEEcC-CCEEEEEeCCCce
Confidence 678999999999777 54678899999986654221 1123345688999999998 666666 8899999966655
Q ss_pred eeEecC-CCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcE
Q 001184 490 LFQFEG-HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSH 568 (1130)
Q Consensus 490 ~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1130)
...+.. ....+..+++.+ ++.++++...++.|.+|+..+.............+..++++++|+.+++... ++.
T Consensus 99 ~~~~~~~~~~~p~~i~~~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~----~~~ 172 (270)
T 1rwi_B 99 QTVLPFDGLNYPEGLAVDT--QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD----NNR 172 (270)
T ss_dssp CEECCCCSCSSEEEEEECT--TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGG----GTE
T ss_pred EeeeecCCcCCCcceEECC--CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECC----CCE
Confidence 554442 335688888865 5567777777889999976544333322222335788999999986666543 678
Q ss_pred EEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEE
Q 001184 569 LVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLV 648 (1130)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~ 648 (1130)
|.+||..+........... .....++++++|..+++...++.|.+|+........ ... .+...+.+++++++|++++
T Consensus 173 i~~~~~~~~~~~~~~~~~~-~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~-~~~~~p~~i~~~~~g~l~v 249 (270)
T 1rwi_B 173 VVKLEAESNNQVVLPFTDI-TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF-TGLNTPLAVAVDSDRTVYV 249 (270)
T ss_dssp EEEECTTTCCEEECCCSSC-CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC-CSCSCEEEEEECTTCCEEE
T ss_pred EEEEecCCCceEeecccCC-CCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc-CCCCCceeEEECCCCCEEE
Confidence 9999987665443222221 357789999999777777778899999987654332 221 2223578999999999888
Q ss_pred EEeCCCcEEEEEcCCC
Q 001184 649 VTTADQGIKILANADG 664 (1130)
Q Consensus 649 ~~~~dg~i~iw~~~~~ 664 (1130)
+...++.|++++....
T Consensus 250 ~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 250 ADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEGGGTEEEEECCCGG
T ss_pred EECCCCEEEEEcCCCc
Confidence 8888999999997654
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-10 Score=128.56 Aligned_cols=275 Identities=9% Similarity=-0.049 Sum_probs=178.0
Q ss_pred EEecCCCeEEEEEe-CcC---eEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEe-
Q 001184 354 DFHPFHHTLLVVGC-GDG---EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF- 428 (1130)
Q Consensus 354 ~fspdg~~llasg~-~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~- 428 (1130)
...|++++++++-. ... +|.+||..+++.+.. +.....+ .+++||||++|+++.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spDg~~lyv~n~ 85 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFLP--NPVAAHSGSEFALAST 85 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-------------------ecCCCCC--CeEECCCCCEEEEEec
Confidence 34577775444332 222 889999999887642 2222223 899999999998885
Q ss_pred ---------CCCeEEEEEecCCccceeeeeee--c---CCCCeeEEEEecCCCceEEEEEc--CCCcEEEEecCCCeeeE
Q 001184 429 ---------TKHLIHLYTYQGSNDLCQSLEID--A---HVGGVNDLAFSYPNKQLCIVTCG--DDKLIRVWDLSGRKLFQ 492 (1130)
Q Consensus 429 ---------~d~~i~vwd~~~~~~~~~~~~~~--~---h~~~V~~i~~s~d~~~l~l~s~s--~d~~v~iwd~~~~~~~~ 492 (1130)
.++.|.+||..+.+.+.... +. . +......++|+|||+ +|+.++ .++.|.++|.+++.+..
T Consensus 86 ~~~~~~rg~~~~~v~viD~~t~~~~~~i~-~~~~~~~~~g~~p~~~~~spDG~--~l~v~n~~~~~~v~viD~t~~~~~~ 162 (373)
T 2mad_H 86 SFSRIAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNA--DLLFFQFAAGPAVGLVVQGGSSDDQ 162 (373)
T ss_pred cccccccCCCCCeEEEEECCCCcEEEEEE-CCCccccccCCCccceEECCCCC--EEEEEecCCCCeEEEEECCCCEEeE
Confidence 36789999998876554321 11 0 012345899999999 455554 25789999933444445
Q ss_pred -ecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeec-----CCCcc-EEEEEEecCCCeEEEeeecCCC
Q 001184 493 -FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD-----APGLW-CTTMLYSADGSRLFSCGTSKEG 565 (1130)
Q Consensus 493 -~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-----~~~~~-v~~~~~s~~~~~l~~~~~~~~~ 565 (1130)
+. .... +.+.+... ..+++.+.||.+.++|. +++...... ....+ .....+.+++..++..+.
T Consensus 163 ~i~-~~~~---~~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---- 232 (373)
T 2mad_H 163 LLS-SPTC---YHIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY---- 232 (373)
T ss_pred EcC-CCce---EEEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC----
Confidence 33 2222 23333333 45677788999999999 655442211 11112 233566777666555443
Q ss_pred CcEEEEeeCCCCc--eeEEEecc---------cCceeEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCceeE
Q 001184 566 DSHLVEWNESEGA--LKRTYIGF---------RKKSAGVVQFDTTRNRILAAGE----------DNQIKFWDMDNVNMLT 624 (1130)
Q Consensus 566 ~~~i~~wd~~~~~--~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~----------dg~i~vwd~~~~~~~~ 624 (1130)
.+.+.+.|..++. .+..+.-. .......+.+++++++++++.. ++.|.++|..+++.+.
T Consensus 233 ~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~ 312 (373)
T 2mad_H 233 SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS 312 (373)
T ss_pred CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEE
Confidence 6789999986543 22222110 1112334788999998888653 3579999999999999
Q ss_pred EEeccCCCCCcceEEEcCCCC-EEEEEe-CCCcEEEEEcCCCc
Q 001184 625 STEAEGGLPSLPRLRFNKEGN-LLVVTT-ADQGIKILANADGL 665 (1130)
Q Consensus 625 ~~~~~~~~~~i~~v~~s~~~~-~l~~~~-~dg~i~iw~~~~~~ 665 (1130)
.+.... ....++|+|||+ .++++. .++.|.++|..++.
T Consensus 313 ~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 313 QISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred EEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 886543 468999999999 777776 58999999998873
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.8e-12 Score=155.23 Aligned_cols=246 Identities=11% Similarity=0.045 Sum_probs=160.0
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCC-----CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCc--
Q 001184 407 DSSISVSRVAWSPDGNFIGVAFTK-----HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL-- 479 (1130)
Q Consensus 407 ~h~~~V~~v~~spdg~~las~~~d-----~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~-- 479 (1130)
+|...+..++|||||++||.++.+ ..|++||+.+++.+.. ..+...+..++|+|| + .|+.++.|+.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~----~~~~~~~~~~~wspD-~--~l~~~~~~~~~~ 232 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD----ELKWVKFSGLAWLGN-D--ALLYSRFAEPKE 232 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE----EEEEEESCCCEESTT-S--EEEEEECCCC--
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc----cCCCceeccEEEECC-C--EEEEEEecCccc
Confidence 455578899999999999988654 4699999999875431 112222467899999 8 4555555443
Q ss_pred ------------EEEEe-cCCC----eeeEecCCCcCEEEEeecccCCccEEEEEecCC-----cEEEEEccCC--ccee
Q 001184 480 ------------IRVWD-LSGR----KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDG-----KIKAWLYDNV--GSRV 535 (1130)
Q Consensus 480 ------------v~iwd-~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg-----~i~vwd~~~~--~~~~ 535 (1130)
|++|+ .++. .+.....+...+..+.|+ +||++|+..+.++ .|.+||++++ ....
T Consensus 233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~S--pDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVS--SDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC--TTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEEC--CCCCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 88999 4443 222223333457778774 5667887776544 8999999876 3133
Q ss_pred eecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc-eeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEE
Q 001184 536 DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA-LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKF 614 (1130)
Q Consensus 536 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 614 (1130)
.+..+...+... ++|+|+.|+..+......+.|++||+.++. ....+..+....+..+.++ ++..+++...|+..++
T Consensus 311 ~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l 388 (741)
T 1yr2_A 311 ALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQV 388 (741)
T ss_dssp EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEE
T ss_pred EecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence 344343334444 358999998887543346789999998752 3334444444456667776 5567777888888777
Q ss_pred EeCC-CCceeEEEeccCCCCCcceEEEcCCCCEEEEEe----CCCcEEEEEcCCC
Q 001184 615 WDMD-NVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT----ADQGIKILANADG 664 (1130)
Q Consensus 615 wd~~-~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~----~dg~i~iw~~~~~ 664 (1130)
|.+. ++.....+..+. ...+..+.++|++..++... ..+.|++||+.++
T Consensus 389 ~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 389 LAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp EEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred EEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 7554 455555555432 23578889999887666332 2478999998776
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.1e-11 Score=136.00 Aligned_cols=203 Identities=14% Similarity=0.124 Sum_probs=143.8
Q ss_pred eEEEEecCCCEEEEEe---CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEE
Q 001184 837 PCVALSKNDSYVMSAG---GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKL 913 (1130)
Q Consensus 837 ~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l 913 (1130)
..++++|||++++++. ++.|.+.|+.+++.+.++..... ....|++...+++.+.||.+.+.+..+++.....
T Consensus 180 ~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~ 255 (426)
T 3c75_H 180 WMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTN 255 (426)
T ss_dssp GGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE
T ss_pred ceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe
Confidence 4578999999988875 47899999999999998874321 3344434466667778888888888666554321
Q ss_pred ----ecCCCCe-eEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccC------CCCCCCeEEEEEcCCCcEEEE
Q 001184 914 ----KGHQKHI-TGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPA------GKLPVGETRVQFHSDQVRLLV 982 (1130)
Q Consensus 914 ----~~h~~~V-~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~------~~~~~~v~~~~~s~d~~~l~~ 982 (1130)
.....++ ..+.|++++..++..+..+.|.+.|+............... +..+.....++++||+..+++
T Consensus 256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyV 335 (426)
T 3c75_H 256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYL 335 (426)
T ss_dssp CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEE
T ss_pred eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEE
Confidence 1111222 24578999998888888899999998764422111111110 001122234789999988777
Q ss_pred Ec-----------CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCC-EEEEEe-CCCcEEEEeCCCccccccc
Q 001184 983 NH-----------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQ-LIYATF-TDGSIGVFDADSLRLRCRI 1047 (1130)
Q Consensus 983 ~~-----------d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~t~~-~Dg~i~vwd~~~~~~~~~~ 1047 (1130)
.. ++.|.++|..+++.+..+... ....+++|+|||+ +++++. .++.|.|+|+.+++.+.++
T Consensus 336 a~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg----~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 336 LVDQRDEWKHKAASRFVVVLNAETGERINKIELG----HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE----EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EecccccccccCCCCEEEEEECCCCeEEEEEECC----CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 42 347999999999999998764 3588999999999 888888 5899999999999998886
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-11 Score=153.45 Aligned_cols=247 Identities=8% Similarity=-0.042 Sum_probs=155.6
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcC----eEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCC
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDG----EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 421 (1130)
|...+..++|||||++++++.+.+| .|++||+.+|+.+.. ..+...+..++||||
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~--------------------~~~~~~~~~~~wspD- 219 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD--------------------ELKWVKFSGLAWLGN- 219 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE--------------------EEEEEESCCCEESTT-
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc--------------------cCCCceeccEEEECC-
Confidence 3347889999999997544444333 599999999987531 011112357899999
Q ss_pred CEEEEEeCCCe--------------EEEEEecCCccce-eeeeeecCCCCeeEEEEecCCCceEEEEEcC-----CCcEE
Q 001184 422 NFIGVAFTKHL--------------IHLYTYQGSNDLC-QSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD-----DKLIR 481 (1130)
Q Consensus 422 ~~las~~~d~~--------------i~vwd~~~~~~~~-~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~-----d~~v~ 481 (1130)
+.|+.++.++. |++|++.++.... .......+...+..+.|||||+. |+..+. ...|+
T Consensus 220 ~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~~l~ 297 (741)
T 1yr2_A 220 DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW--VVITSSEGTDPVNTVH 297 (741)
T ss_dssp SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECTTCSCCEEE
T ss_pred CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE--EEEEEEccCCCcceEE
Confidence 99999887654 8899987765321 11122233446889999999994 444443 34899
Q ss_pred EEe-cCC--CeeeEecCCCcCEEEEeecccCCccEEEEEec----CCcEEEEEccCC--cceeeecCCCccEEEEEEecC
Q 001184 482 VWD-LSG--RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV----DGKIKAWLYDNV--GSRVDYDAPGLWCTTMLYSAD 552 (1130)
Q Consensus 482 iwd-~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~----dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~s~~ 552 (1130)
+|| .++ .+...+..+...+....+ +++..|+..+. ++.|.+||+++. .....+..+...+..+.++ +
T Consensus 298 ~~d~~~~~~~~~~~l~~~~~~~~~~~~---~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~ 373 (741)
T 1yr2_A 298 VARVTNGKIGPVTALIPDLKAQWDFVD---GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-G 373 (741)
T ss_dssp EEEEETTEECCCEEEECSSSSCEEEEE---EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-B
T ss_pred EEECCCCCCcccEEecCCCCceEEEEe---ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-C
Confidence 999 444 315566656555554432 34566666665 345999998874 2233334444456677777 4
Q ss_pred CCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEE-e---CCCcEEEEeCCCCce
Q 001184 553 GSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAA-G---EDNQIKFWDMDNVNM 622 (1130)
Q Consensus 553 ~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~---~dg~i~vwd~~~~~~ 622 (1130)
+..+++... ++...|++++. ++...+.+.......+..+.++|+++.++.. + ..+.|++||+.+++.
T Consensus 374 ~~lv~~~~~--dg~~~l~~~~~-~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 374 NRLFASYIH--DAKSQVLAFDL-DGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp TEEEEEEEE--TTEEEEEEEET-TSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CEEEEEEEE--CCEEEEEEEeC-CCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 445555543 23345556665 3555555554334467888999998765533 2 347899999988863
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-10 Score=126.68 Aligned_cols=248 Identities=13% Similarity=0.077 Sum_probs=164.9
Q ss_pred CCCCEEEEEEecCCCeEEEE-------EeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEc
Q 001184 346 QGSSVVSMDFHPFHHTLLVV-------GCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llas-------g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 418 (1130)
.-....+++|+++|+ ++++ +..++.|.+||..+++.... .. ....++...+.+++++
T Consensus 16 ~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------~~---------~~~~~~~~~~~~i~~~ 79 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI------CK---------PEVNGYGGIPAGCQCD 79 (314)
T ss_dssp CCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE------EC---------CEETTEECCEEEEEEC
T ss_pred cCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEE------Ee---------cccCCCCCCCceEEEe
Confidence 345678999999997 5666 56688999999888775421 00 0012345679999999
Q ss_pred CC-CCEEEEEeCCCeEEEEEecCCcccee-eeeeec-CCCCeeEEEEecCCCceEEEEEcCC---------------CcE
Q 001184 419 PD-GNFIGVAFTKHLIHLYTYQGSNDLCQ-SLEIDA-HVGGVNDLAFSYPNKQLCIVTCGDD---------------KLI 480 (1130)
Q Consensus 419 pd-g~~las~~~d~~i~vwd~~~~~~~~~-~~~~~~-h~~~V~~i~~s~d~~~l~l~s~s~d---------------~~v 480 (1130)
++ |+++++.. .+.|.+||.+ ++.... .....+ ....+.++++.++|+ +.++...+ +.|
T Consensus 80 ~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~l 155 (314)
T 1pjx_A 80 RDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSI 155 (314)
T ss_dssp SSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred cCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCCeE
Confidence 99 76555554 4478999988 653221 100011 224589999999998 56666554 567
Q ss_pred EEEecCCCeeeEecCCCcCEEEEeec--ccCCccEEEE-EecCCcEEEEEcc-CCc-----ceeeecCCC-ccEEEEEEe
Q 001184 481 RVWDLSGRKLFQFEGHEAPVYSVCPH--QKENIHFIFS-TAVDGKIKAWLYD-NVG-----SRVDYDAPG-LWCTTMLYS 550 (1130)
Q Consensus 481 ~iwd~~~~~~~~~~~h~~~v~~~~~~--~~~~~~~l~s-~s~dg~i~vwd~~-~~~-----~~~~~~~~~-~~v~~~~~s 550 (1130)
..||..++... +..+......++++ .+++++.++. ...++.|.+|+++ .+. ....+..+. ..+..++++
T Consensus 156 ~~~~~~g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d 234 (314)
T 1pjx_A 156 YCFTTDGQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD 234 (314)
T ss_dssp EEECTTSCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB
T ss_pred EEECCCCCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC
Confidence 77885555433 33344456777775 1145555544 4567899999986 332 112223332 557889999
Q ss_pred cCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEE-eCCCcEEEEeCCC
Q 001184 551 ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAA-GEDNQIKFWDMDN 619 (1130)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~ 619 (1130)
++|+.+++... ++.|.+||..+++.+..+..+. ..+.+++++++++.|+++ ..++.|..|++..
T Consensus 235 ~~G~l~v~~~~----~~~i~~~d~~~g~~~~~~~~~~-~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 235 EDNNLLVANWG----SSHIEVFGPDGGQPKMRIRCPF-EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTCCEEEEEET----TTEEEEECTTCBSCSEEEECSS-SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCEEEEEcC----CCEEEEEcCCCCcEeEEEeCCC-CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99988777643 6789999998788777776543 368889999999955554 4568899999864
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.36 E-value=7.7e-11 Score=131.49 Aligned_cols=272 Identities=10% Similarity=0.074 Sum_probs=182.7
Q ss_pred cCCCeEEEEEeCc----CeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEe----
Q 001184 357 PFHHTLLVVGCGD----GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF---- 428 (1130)
Q Consensus 357 pdg~~llasg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~---- 428 (1130)
|++++++++...+ +.|.++|..+++.+...+ .+ ..+ .+++||||++|.++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~------------------vG-~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTD------------------GG-FLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEE------------------EC-SSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEE------------------CC-CCC--ceEECCCCCEEEEEecccc
Confidence 5666655555544 799999999998876311 12 223 799999999888775
Q ss_pred ------CCCeEEEEEecCCccceeeeeee--c---CCCCeeEEEEecCCCceEEEEEc--CCCcEEEEe-cCCCeeeEec
Q 001184 429 ------TKHLIHLYTYQGSNDLCQSLEID--A---HVGGVNDLAFSYPNKQLCIVTCG--DDKLIRVWD-LSGRKLFQFE 494 (1130)
Q Consensus 429 ------~d~~i~vwd~~~~~~~~~~~~~~--~---h~~~V~~i~~s~d~~~l~l~s~s--~d~~v~iwd-~~~~~~~~~~ 494 (1130)
.++.|.++|..+++.+.... +. . .......++|+|||++ ++.+. .++.|.+.| .+++.+.++.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~--lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKN--LLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSE--EEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 36789999999987655322 21 0 1234567899999994 55544 368999999 7888877776
Q ss_pred CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCccee----eecCCCcc-EEEEEEecCCCeEEEeeecCCCCcEE
Q 001184 495 GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV----DYDAPGLW-CTTMLYSADGSRLFSCGTSKEGDSHL 569 (1130)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~----~~~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1130)
--.. ....+... ..+++.+.||++.+.+....+... .+.....+ ...+.|.+++..++.... .+.+
T Consensus 218 v~g~----~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~----~g~V 288 (426)
T 3c75_H 218 VPDC----YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY----TGKI 288 (426)
T ss_dssp CCSE----EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT----TSEE
T ss_pred cCCc----eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC----CCcE
Confidence 3211 12223222 466677788888888874433321 11212222 123567899888877654 6789
Q ss_pred EEeeCCCCcee--EEEecc---------cCceeEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCceeEEEec
Q 001184 570 VEWNESEGALK--RTYIGF---------RKKSAGVVQFDTTRNRILAAGE----------DNQIKFWDMDNVNMLTSTEA 628 (1130)
Q Consensus 570 ~~wd~~~~~~~--~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~ 628 (1130)
++.|....... ..+.-. .......++++++++++++... ++.|.++|..+.+.+..+..
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v 368 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL 368 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence 99998654421 111100 0001223689999998877642 35799999999999999876
Q ss_pred cCCCCCcceEEEcCCCC-EEEEEe-CCCcEEEEEcCCC
Q 001184 629 EGGLPSLPRLRFNKEGN-LLVVTT-ADQGIKILANADG 664 (1130)
Q Consensus 629 ~~~~~~i~~v~~s~~~~-~l~~~~-~dg~i~iw~~~~~ 664 (1130)
.. ....++|+|||+ ++++.. .++.|.++|..+.
T Consensus 369 g~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~ 403 (426)
T 3c75_H 369 GH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATG 403 (426)
T ss_dssp EE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred CC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence 54 368999999999 888888 5899999999887
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.9e-09 Score=115.68 Aligned_cols=240 Identities=11% Similarity=0.012 Sum_probs=167.5
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecC
Q 001184 407 DSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS 486 (1130)
Q Consensus 407 ~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~ 486 (1130)
.....+.+++++++|+.+++...++.|.+||.. ++... ..+..+...+.++++.++|. +.++...++.|..||..
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~--~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~v~~~d~~ 91 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE--FEVPTPDAKVMCLIVSSLGD--IWFTENGANKIGKLSKK 91 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE--EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECTT
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE--EECCCCCCcceeEEECCCCC--EEEEecCCCeEEEECCC
Confidence 445678999999999988887778999999987 54222 22334456799999999998 67777778899999955
Q ss_pred CCeee-EecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcce-eeecCCCccEEEEEEecCCCeEEEeeecCC
Q 001184 487 GRKLF-QFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR-VDYDAPGLWCTTMLYSADGSRLFSCGTSKE 564 (1130)
Q Consensus 487 ~~~~~-~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 564 (1130)
++... .+......+.++++. +++.++++...++.|..||.+ +... ..+......+..+++.++|+..++...
T Consensus 92 g~~~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~--- 165 (300)
T 2qc5_A 92 GGFTEYPLPQPDSGPYGITEG--LNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQ--- 165 (300)
T ss_dssp SCEEEEECSSTTCCEEEEEEC--STTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETT---
T ss_pred CCeEEecCCCCCCCCccceEC--CCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecC---
Confidence 65532 222244678888885 455677776668899999887 3332 223334457899999999996655432
Q ss_pred CCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCC
Q 001184 565 GDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEG 644 (1130)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~ 644 (1130)
.+.|..+|. +++............+..+++.++++.+++....+.|.+|+. +++.... ........+.+++++++|
T Consensus 166 -~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~~~~~~~~~i~~d~~g 241 (300)
T 2qc5_A 166 -NNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY-DIPTPNARPHAITAGKNS 241 (300)
T ss_dssp -TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE-ECSSTTCCEEEEEECSTT
T ss_pred -CCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE-ECCCCCCCceEEEECCCC
Confidence 678999998 565544222122235778999999887776666778999998 5554332 222233467899999999
Q ss_pred CEEEEEeCCCcEEEEEc
Q 001184 645 NLLVVTTADQGIKILAN 661 (1130)
Q Consensus 645 ~~l~~~~~dg~i~iw~~ 661 (1130)
++.++...++.|..|+.
T Consensus 242 ~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 242 EIWFTEWGANQIGRITN 258 (300)
T ss_dssp CEEEEETTTTEEEEECT
T ss_pred CEEEeccCCCeEEEECC
Confidence 87666656788888876
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-10 Score=128.12 Aligned_cols=176 Identities=13% Similarity=0.092 Sum_probs=136.9
Q ss_pred CceeEEEEecCCCEEEEEeCCeEEEEECCCce-----------eEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEE
Q 001184 834 DVVPCVALSKNDSYVMSAGGGKVSLFNMMNFK-----------VMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIY 902 (1130)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iw 902 (1130)
..+..+++++...++++|+...+.+|++...+ ..... .+.. |+.++| ++.+|+++ .++.|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence 36889999999999999997788889876443 11223 3455 999999 56788888 88999999
Q ss_pred EeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE
Q 001184 903 NVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1130)
Q Consensus 903 d~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 982 (1130)
|+.+.........|..++.++.+.+. .+++++.||.|.+||++.+.... ....|++++|||+| ..+.
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----------~~~~Vs~v~WSpkG-~~vg 178 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----------LAQNVTSFDVTNSQ-LAVL 178 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----------EEESEEEEEECSSE-EEEE
T ss_pred EchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----------ccCCceEEEEcCCc-eEEE
Confidence 99877666667778888998887755 38899999999999999765421 11579999999999 5556
Q ss_pred EcCCcEEEEECCCcee--eeeeec------CCCCCCCeEEEEECCCCCEEEEEe
Q 001184 983 NHETQLAIYDGSKMEC--IRQWVP------QDVLSSPISSAAYSCNSQLIYATF 1028 (1130)
Q Consensus 983 ~~d~~i~v~d~~~~~~--~~~~~~------~~~~~~~v~~v~~s~dg~~l~t~~ 1028 (1130)
..|+.+++|+...++. .+.+.. +.+|...|.+++|.+++.++++=.
T Consensus 179 ~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 179 LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 7899999999988775 445521 113478999999999999888733
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.32 E-value=3.9e-10 Score=123.69 Aligned_cols=245 Identities=12% Similarity=0.057 Sum_probs=162.1
Q ss_pred CCCccEEEEEEcCCCCEEEE-------EeCCCeEEEEEecCCccceeee-eeecCCCCeeEEEEecC-CCceEEEEEcCC
Q 001184 407 DSSISVSRVAWSPDGNFIGV-------AFTKHLIHLYTYQGSNDLCQSL-EIDAHVGGVNDLAFSYP-NKQLCIVTCGDD 477 (1130)
Q Consensus 407 ~h~~~V~~v~~spdg~~las-------~~~d~~i~vwd~~~~~~~~~~~-~~~~h~~~V~~i~~s~d-~~~l~l~s~s~d 477 (1130)
..-....+++|+++|+++++ +..++.|.+||..+++...... ...++...+.+++++++ |+ ++++.. .
T Consensus 15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~--l~v~~~-~ 91 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ--LFVADM-R 91 (314)
T ss_dssp CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE--EEEEET-T
T ss_pred ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc--EEEEEC-C
Confidence 33446789999999998887 5678899999988776422100 00125567999999999 66 445444 4
Q ss_pred CcEEEEecCCCeeeE-ecC----CCcCEEEEeecccCCccEEEEEecC---------------CcEEEEEccCCcceeee
Q 001184 478 KLIRVWDLSGRKLFQ-FEG----HEAPVYSVCPHQKENIHFIFSTAVD---------------GKIKAWLYDNVGSRVDY 537 (1130)
Q Consensus 478 ~~v~iwd~~~~~~~~-~~~----h~~~v~~~~~~~~~~~~~l~s~s~d---------------g~i~vwd~~~~~~~~~~ 537 (1130)
+.|.+||.+++.... ... ....+.++++.+ ++.++++...+ +.|..|+.+ ++ ...+
T Consensus 92 ~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~--~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~ 167 (314)
T 1pjx_A 92 LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY--EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ-MIQV 167 (314)
T ss_dssp TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT--TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC-EEEE
T ss_pred CCEEEEeCCCCEEEEEeccCCCccccCCcCEEECC--CCCEEEEecCcccccccccccccCCCCeEEEECCC-CC-EEEe
Confidence 478999944654332 221 123577888854 55677666554 456666654 22 2222
Q ss_pred cCCCccEEEEEEe----cCCCeEEEeeecCCCCcEEEEeeCC-CCce-----eEEEecccCceeEEEEEcCCCCEEEEEe
Q 001184 538 DAPGLWCTTMLYS----ADGSRLFSCGTSKEGDSHLVEWNES-EGAL-----KRTYIGFRKKSAGVVQFDTTRNRILAAG 607 (1130)
Q Consensus 538 ~~~~~~v~~~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 607 (1130)
.........++++ |+++.++++.. .++.|++||.. +++. ...+..+.......++++++|+.+++..
T Consensus 168 ~~~~~~~~~i~~~~~~d~dg~~l~v~~~---~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~ 244 (314)
T 1pjx_A 168 DTAFQFPNGIAVRHMNDGRPYQLIVAET---PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW 244 (314)
T ss_dssp EEEESSEEEEEEEECTTSCEEEEEEEET---TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred ccCCCCcceEEEecccCCCCCEEEEEEC---CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc
Confidence 2222346789999 99987666542 26789999976 4432 1222222103567799999998888877
Q ss_pred CCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEE-eCCCcEEEEEcCC
Q 001184 608 EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVT-TADQGIKILANAD 663 (1130)
Q Consensus 608 ~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~-~~dg~i~iw~~~~ 663 (1130)
.++.|.+||..+++.+..+..+. ..+.+++++|+++.|+++ ..++.|..|++..
T Consensus 245 ~~~~i~~~d~~~g~~~~~~~~~~--~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 245 GSSHIEVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTTEEEEECTTCBSCSEEEECSS--SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCEEEEEcCCCCcEeEEEeCCC--CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 88999999998787776665543 368899999999955554 4567898998764
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-09 Score=123.58 Aligned_cols=239 Identities=10% Similarity=-0.000 Sum_probs=160.3
Q ss_pred CCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEE
Q 001184 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1130)
Q Consensus 348 ~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 427 (1130)
.....++|+|+|+ ++++...++.|++||..++.... +.... .... ++|+|+++.|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~-------------------~~~~~-~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTT-------------------VHPGF-KGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEE-------------------EEETC-CBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEE-------------------eeccC-CCCc-eeEecCCCcEEEE
Confidence 4789999999997 78887778999999998877653 12222 2233 9999999999988
Q ss_pred eCCC--eEEEEEecCCccceeeeeeec-CCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEe-----cCCCcC
Q 001184 428 FTKH--LIHLYTYQGSNDLCQSLEIDA-HVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQF-----EGHEAP 499 (1130)
Q Consensus 428 ~~d~--~i~vwd~~~~~~~~~~~~~~~-h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~-----~~h~~~ 499 (1130)
..++ .|.+|+..++........+.. ....+.+++++|++.. |+.+..++.|+.||..+.....+ .++...
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~--lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW--LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE--EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe--EEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 8766 788888877654322111112 4567889999995553 44466788999999443333333 222222
Q ss_pred E--EEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCC---------------CccEEEEEEecCCCeEEEeeec
Q 001184 500 V--YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP---------------GLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 500 v--~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~---------------~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
- ..++|++. ++.++++...+++|+.|+.+.. ...+... -.....++++++|+++++-.
T Consensus 267 ~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~-- 341 (409)
T 3hrp_A 267 NPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG-- 341 (409)
T ss_dssp SSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET--
T ss_pred CccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC--
Confidence 2 28888763 3466777777889999987654 2222111 13478999999999666543
Q ss_pred CCCCcEEEEeeCCCCceeEEEeccc--------------CceeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001184 563 KEGDSHLVEWNESEGALKRTYIGFR--------------KKSAGVVQFDTTRNRILAAGEDNQIKFWDM 617 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 617 (1130)
..+..|+.|+..++.. ..+.++. -.....+++++++..+++-..++.|+.+++
T Consensus 342 -~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 -FKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -TTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -CCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 0278999999877764 3444330 124667899999777777777788887765
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=5.8e-10 Score=136.41 Aligned_cols=250 Identities=12% Similarity=0.040 Sum_probs=162.7
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCc----CeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCC
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGD----GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 421 (1130)
|...+..++|||||++++++.+.. ..|+|||+.+|+.+.. .+.+ .....++|+ ||
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~------------------~~~~--~k~~~~~Ws-Dg 185 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET------------------PLKD--VKFSGISWL-GN 185 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE------------------EEEE--EESCCCEEE-TT
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc------------------ccCC--ceeccEEEe-CC
Confidence 556789999999999755544333 5799999999986531 0111 113568899 99
Q ss_pred CEEEEEeCCC-------------eEEEEEecCCccce-eeeeeec-CCCCeeEEEEecCCCceEEEEEc---CCCcEEEE
Q 001184 422 NFIGVAFTKH-------------LIHLYTYQGSNDLC-QSLEIDA-HVGGVNDLAFSYPNKQLCIVTCG---DDKLIRVW 483 (1130)
Q Consensus 422 ~~las~~~d~-------------~i~vwd~~~~~~~~-~~~~~~~-h~~~V~~i~~s~d~~~l~l~s~s---~d~~v~iw 483 (1130)
+.|+.++.+. .|++|++.++..-. ....... |...+..+.|+|||+.+ +++.+ .++.|++|
T Consensus 186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~~ 264 (693)
T 3iuj_A 186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL-LISAANSTSGNRLYVK 264 (693)
T ss_dssp TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE-EEEEESSSSCCEEEEE
T ss_pred CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE-EEEEccCCCCcEEEEE
Confidence 9999998774 39999998765321 1222233 45567899999999963 33333 23589999
Q ss_pred e-cCCC-eeeEecCCCcCEEEEeecccCCccEEEEEecC---CcEEEEEccCCcc--eeeecCCCccEEEEEEecCCCeE
Q 001184 484 D-LSGR-KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD---GKIKAWLYDNVGS--RVDYDAPGLWCTTMLYSADGSRL 556 (1130)
Q Consensus 484 d-~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l 556 (1130)
| .++. ....+..+....... +.+.+ +.+++....+ +.|..+++.+... ...+..+...+. .|+++++.|
T Consensus 265 d~~~~~~~~~~l~~~~~~~~~~-~~~~g-~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~l 340 (693)
T 3iuj_A 265 DLSQENAPLLTVQGDLDADVSL-VDNKG-STLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYL 340 (693)
T ss_dssp ETTSTTCCCEEEECSSSSCEEE-EEEET-TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEE
T ss_pred ECCCCCCceEEEeCCCCceEEE-EeccC-CEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEE
Confidence 9 4432 556666666665554 33322 3444555443 5788999987654 233444444444 899999998
Q ss_pred EEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCC----CcEEEEeCCCCcee
Q 001184 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED----NQIKFWDMDNVNML 623 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~ 623 (1130)
+.... .++...|++||+..+ ..+.+.......+..+.++++++.++....+ +.++.||+.+++..
T Consensus 341 v~~~~-~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 341 FAEYM-VDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEEE-ETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEEE-ECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 87764 233458999998754 4444443333356667778888766665444 78999999887643
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-09 Score=122.56 Aligned_cols=253 Identities=9% Similarity=0.010 Sum_probs=165.2
Q ss_pred CCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCC--cEEEEEeecCeE
Q 001184 833 EDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS--TIQIYNVRVDEV 909 (1130)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg--~v~iwd~~~~~~ 909 (1130)
-.....++++++|+++++.. ++.|++||..++......... .... ++|++ ++..|++++.++ .|++|+..++..
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCce
Confidence 34578999999999777666 689999999988777666543 3333 99999 777888887766 788888876654
Q ss_pred EEEE----ecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCC-eEEEEEcCCCcEEE-E-
Q 001184 910 KTKL----KGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVG-ETRVQFHSDQVRLL-V- 982 (1130)
Q Consensus 910 ~~~l----~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~d~~~l~-~- 982 (1130)
...+ ..+...+.+++++|++..|+.+..++.|+.||..++......... ..+..... ...++|+|++..|+ +
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~-~~g~~~~~P~~~ia~~p~~g~lyv~d 285 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE-LSGSLGTNPGPYLIYYFVDSNFYMSD 285 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC-CCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc-ccCCCCCCccccEEEeCCCCEEEEEe
Confidence 4444 224566889999996556666778889999999876421110000 11111111 13899999644444 4
Q ss_pred EcCCcEEEEECCCceeeeeeecCC------------CCCCCeEEEEECCCCCEEEEEe-CCCcEEEEeCCCcccccccCC
Q 001184 983 NHETQLAIYDGSKMECIRQWVPQD------------VLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRLRCRIAP 1049 (1130)
Q Consensus 983 ~~d~~i~v~d~~~~~~~~~~~~~~------------~~~~~v~~v~~s~dg~~l~t~~-~Dg~i~vwd~~~~~~~~~~~~ 1049 (1130)
..++.|+.|+.... +..+.+.. ..-.....++++++|+++++-. .+++|++|++.+++.......
T Consensus 286 ~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~ 363 (409)
T 3hrp_A 286 QNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQ 363 (409)
T ss_dssp TTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEEC
T ss_pred CCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCC
Confidence 34778999987643 22332221 0013478999999999888777 789999999888875433221
Q ss_pred Cc---ccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 001184 1050 SA---YMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEP 1092 (1130)
Q Consensus 1050 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~ 1092 (1130)
.. +.........-..+..+++.++ +.++++-..+++|+.+++
T Consensus 364 ~~~~g~~~g~~~~~~~~~P~giavd~~-g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 364 VDVASQIDGTPLEATFNYPYDICYDGE-GGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTCBSCCCBSTTTCCBSSEEEEEECSS-SEEEEEESTTCEEEEEEE
T ss_pred CCCCCcCCCChhceEeCCceEEEEcCC-CCEEEEECCCCeEEEEEe
Confidence 00 0000000111234677888885 778888888888888765
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.26 E-value=1.7e-09 Score=117.25 Aligned_cols=228 Identities=11% Similarity=0.086 Sum_probs=154.3
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 426 (1130)
..-..+..|+|+++.++++...++.|..||..+++... + .....+.+++++|||+++++
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~~~~i~~~~dG~l~v~ 70 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR--------------------V-TMDAPVSSVALRQSGGYVAT 70 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE--------------------E-ECSSCEEEEEEBTTSSEEEE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-eCCCceEEEEECCCCCEEEE
Confidence 34567899999777788888888999999998876532 1 22457999999999996554
Q ss_pred EeCCCeEEEEEecCCccceeeeeeec--CCCCeeEEEEecCCCceEEEEE-cC----------CCcEEEEecCCCeeeEe
Q 001184 427 AFTKHLIHLYTYQGSNDLCQSLEIDA--HVGGVNDLAFSYPNKQLCIVTC-GD----------DKLIRVWDLSGRKLFQF 493 (1130)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~--h~~~V~~i~~s~d~~~l~l~s~-s~----------d~~v~iwd~~~~~~~~~ 493 (1130)
. ++.|.+||.++++.. ....... ....+.++++.|+|+ +.++. +. .+.|..+|..++... +
T Consensus 71 ~--~~~l~~~d~~~g~~~-~~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~ 144 (297)
T 3g4e_A 71 I--GTKFCALNWKEQSAV-VLATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-Y 144 (297)
T ss_dssp E--TTEEEEEETTTTEEE-EEEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-E
T ss_pred E--CCeEEEEECCCCcEE-EEEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEEE-E
Confidence 3 567999999887532 2211111 224588999999998 44543 21 234444444454433 3
Q ss_pred cCCCcCEEEEeecccCCccEE-EEEecCCcEEEEEcc--CCcc-----eeeecCCCccEEEEEEecCCCeEEEeeecCCC
Q 001184 494 EGHEAPVYSVCPHQKENIHFI-FSTAVDGKIKAWLYD--NVGS-----RVDYDAPGLWCTTMLYSADGSRLFSCGTSKEG 565 (1130)
Q Consensus 494 ~~h~~~v~~~~~~~~~~~~~l-~s~s~dg~i~vwd~~--~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1130)
..+....+.++|++ +++.| ++.+.++.|.+|+++ ++.. ...+......+..++++++|++.++...
T Consensus 145 ~~~~~~pngi~~sp--dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~---- 218 (297)
T 3g4e_A 145 FDQVDISNGLDWSL--DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN---- 218 (297)
T ss_dssp EEEESBEEEEEECT--TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET----
T ss_pred eeccccccceEEcC--CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC----
Confidence 33445567888865 44544 556668899999984 3321 1122222346789999999987766643
Q ss_pred CcEEEEeeCCCCceeEEEecccCceeEEEEEc-CCCCEEEEEeC
Q 001184 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFD-TTRNRILAAGE 608 (1130)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~ 608 (1130)
.+.|..||..+++.+..+..+.. .+.+++|. |+++.|+.++.
T Consensus 219 ~~~v~~~d~~tG~~~~~i~~p~~-~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 219 GGRVIRLDPVTGKRLQTVKLPVD-KTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TTEEEEECTTTCCEEEEEECSSS-BEEEEEEESGGGCEEEEEEB
T ss_pred CCEEEEEcCCCceEEEEEECCCC-CceEEEEeCCCCCEEEEEcC
Confidence 67899999999999888876533 68889998 88887766654
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.4e-10 Score=126.79 Aligned_cols=270 Identities=11% Similarity=0.003 Sum_probs=171.6
Q ss_pred CCEEEEEEecCCCeEEEEEeC--cCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 348 SSVVSMDFHPFHHTLLVVGCG--DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 348 ~~V~~v~fspdg~~llasg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
..+..++++|+|+ ++++... ++.++||.+.+++... +.-|. ....+|-..+..++++++|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~~---~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLIP---FPPQS----------GNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEEE---SCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCeec---CCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence 6899999999998 5776532 3436677665554331 11111 01234667899999999998777
Q ss_pred EEeC-----CCeEEEEEecCCccceeeeeee----cCCCCeeEEEEecCCCceEEEEEc---CCCcEEEEe-cCCCeeeE
Q 001184 426 VAFT-----KHLIHLYTYQGSNDLCQSLEID----AHVGGVNDLAFSYPNKQLCIVTCG---DDKLIRVWD-LSGRKLFQ 492 (1130)
Q Consensus 426 s~~~-----d~~i~vwd~~~~~~~~~~~~~~----~h~~~V~~i~~s~d~~~l~l~s~s---~d~~v~iwd-~~~~~~~~ 492 (1130)
+-.. ++.|.+||+.+++.++.. .+. .+...+..+++++++.. ++++.. .++.|.+|| .+++....
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6543 578999999988744322 221 22345789999987653 456655 688999999 66777666
Q ss_pred ecCCCcCEE-EEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEE
Q 001184 493 FEGHEAPVY-SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1130)
Q Consensus 493 ~~~h~~~v~-~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1130)
+.+|..... ...+. .++..+.+.+.+++++.|. ..+..++|+|||+.|+++... ...++.
T Consensus 161 ~~~~~~~~~~~~~~~--~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~---~~~l~~ 221 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLV--IDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMH---STSMYR 221 (343)
T ss_dssp CTTCTTTSCCSCCCE--ETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESS---CSEEEE
T ss_pred ecCCCccccccccee--ECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCC---CCeEEE
Confidence 665432211 01221 2445666677788776653 136789999999988887641 346666
Q ss_pred eeCC---CCc-----eeE--EEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEc
Q 001184 572 WNES---EGA-----LKR--TYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN 641 (1130)
Q Consensus 572 wd~~---~~~-----~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s 641 (1130)
++.. .+. ... ...++.. ....++++++|+.+++...++.|.+||..+++........ ......+++|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~g-~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va~~ 299 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEKP-ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFNFG 299 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEECC-SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEEEC
T ss_pred EEHHHhcCCCCChhhhhcceEecccCC-CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeEEC
Confidence 6532 111 000 1112221 3456889999998888888999999998667644333322 22357889999
Q ss_pred CCCCEEEEEeCCC
Q 001184 642 KEGNLLVVTTADQ 654 (1130)
Q Consensus 642 ~~~~~l~~~~~dg 654 (1130)
+++.++++....+
T Consensus 300 ~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 300 SDGYLYFDCNQLH 312 (343)
T ss_dssp TTSCEEEEECCGG
T ss_pred CCCcEEEEeCccc
Confidence 9888777765443
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.25 E-value=2.8e-09 Score=115.46 Aligned_cols=230 Identities=7% Similarity=-0.025 Sum_probs=151.1
Q ss_pred CCceeEEEEecCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEE
Q 001184 833 EDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVK 910 (1130)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 910 (1130)
..-..+.+|++++..|...+ ++.|..||..+++.. .+. ....+.++++++ +++++++ . ++.|.+||..+++..
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSAV 86 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEEE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcEE
Confidence 34456889999766555554 689999999887653 333 356799999999 7775554 3 567999999888754
Q ss_pred EEEecC----CCCeeEEEEccCCCeEEEEeCC---------CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCC
Q 001184 911 TKLKGH----QKHITGLAFSTNLNILVSSGSD---------AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQ 977 (1130)
Q Consensus 911 ~~l~~h----~~~V~~l~~s~dg~~L~s~s~D---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 977 (1130)
...... ...+.+++++|+|+++++...+ ..-.+|.++........... ......++|+||+
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~------~~~pngi~~spdg 160 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ------VDISNGLDWSLDH 160 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE------ESBEEEEEECTTS
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec------cccccceEEcCCC
Confidence 333221 2347889999999977765332 23456666542221111111 1345689999999
Q ss_pred cEEEEE--cCCcEEEEEC--CCceee--eeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCc
Q 001184 978 VRLLVN--HETQLAIYDG--SKMECI--RQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSA 1051 (1130)
Q Consensus 978 ~~l~~~--~d~~i~v~d~--~~~~~~--~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~ 1051 (1130)
+.|++. .++.|.+|++ .++... ..+.....+......++++++|++.++...++.|.+||..+|+.+..+..+.
T Consensus 161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~ 240 (297)
T 3g4e_A 161 KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV 240 (297)
T ss_dssp CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSS
T ss_pred CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC
Confidence 977663 4788999987 455432 1222111113567899999999988888778899999999999887765321
Q ss_pred ccccCCCCCceeeeEEEEEc-CCCCCEEEEEeCC
Q 001184 1052 YMSQASPNSQTVFPLVVTSH-PQEPNQLAVGLTD 1084 (1130)
Q Consensus 1052 ~~~~~~~~~~~~~~~~~~~~-~~~~~~l~s~~~D 1084 (1130)
..+.+++|. |+...++++...+
T Consensus 241 -----------~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 241 -----------DKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp -----------SBEEEEEEESGGGCEEEEEEBCT
T ss_pred -----------CCceEEEEeCCCCCEEEEEcCCc
Confidence 346678897 5434445555433
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.3e-09 Score=116.80 Aligned_cols=234 Identities=10% Similarity=0.028 Sum_probs=156.4
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
.+.......+|+|+|+++++++..++.|..|+. +++.. .+..+...+..++++++|+++
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~--------------------~~~~~~~~~~gl~~d~dG~l~ 100 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVD--------------------VLLDATAFTNGNAVDAQQRLV 100 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEE--------------------EEEESCSCEEEEEECTTSCEE
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEE--------------------EEeCCCCccceeeECCCCCEE
Confidence 355678899999999988888888999999998 44432 133445678999999999977
Q ss_pred EEEeCCCeEEEEEecCCccceeeeeeecC-CCCeeEEEEecCCCceEEEE----EcC-------------CCcEEEEec-
Q 001184 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAH-VGGVNDLAFSYPNKQLCIVT----CGD-------------DKLIRVWDL- 485 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h-~~~V~~i~~s~d~~~l~l~s----~s~-------------d~~v~iwd~- 485 (1130)
++...++.|.+|+.. ++.........+. ...+.++++.++|+ +.+| |.. .+.|..||.
T Consensus 101 v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~ 177 (305)
T 3dr2_A 101 HCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD 177 (305)
T ss_dssp EEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred EEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence 766666889999986 4422111111111 23577899999998 6665 332 256788884
Q ss_pred CCCeeeEecCCCcCEEEEeecccCCccEEEEEecC------CcEEEEEccCCcc---eeeecCCCccEEEEEEecCCCeE
Q 001184 486 SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD------GKIKAWLYDNVGS---RVDYDAPGLWCTTMLYSADGSRL 556 (1130)
Q Consensus 486 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l 556 (1130)
+++..... .......++|++ +++.|+.+... +.|.+|++..... .............++++++|+..
T Consensus 178 ~g~~~~~~--~~~~p~gl~~sp--dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lw 253 (305)
T 3dr2_A 178 GSPLQRMA--DLDHPNGLAFSP--DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLW 253 (305)
T ss_dssp SCCCEEEE--EESSEEEEEECT--TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEE
T ss_pred CCcEEEEe--cCCCCcceEEcC--CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEE
Confidence 56544333 445667888854 55667666554 7899999875431 11111122345678999999955
Q ss_pred EEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001184 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWD 616 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 616 (1130)
++. .+.|.+|+. +++.+..+.... .+..++|+++++.|+.++.++ ++.++
T Consensus 254 v~~------~~gv~~~~~-~g~~~~~~~~~~--~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 254 SSS------GTGVCVFDS-DGQLLGHIPTPG--TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp ECC------SSEEEEECT-TSCEEEEEECSS--CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred Eec------CCcEEEECC-CCCEEEEEECCC--ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 443 234999997 577777776543 477889999998888887754 44433
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-05 Score=94.62 Aligned_cols=533 Identities=10% Similarity=-0.009 Sum_probs=283.6
Q ss_pred EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecC-CCcCEE
Q 001184 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEG-HEAPVY 501 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~-h~~~v~ 501 (1130)
+|+.+ ....|+..++.+.... ....+. .-..+..++|.+.+.. ++++-..++.|+.++..|..+..+.. ......
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~-~~~~~~-~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNN-VAIPLT-GVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCE-EECCCC-SCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcc-eEEEcC-CCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 44444 4567899999865421 111222 2345889999997764 55666678899999866654444332 223466
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeE
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKR 581 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1130)
.+++.+. .+++.++-...+.|.+.+++...........-.....+++.|....|+.+-. ...+.|...++.......
T Consensus 84 GlAvD~~-~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~--g~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 84 GMAVDWL-GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEW--GGKPKIDRAAMDGSERTT 160 (628)
T ss_dssp EEEEETT-TTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTSCSCEE
T ss_pred eEEEEeC-CCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCC--CCCCEEEEEeCCCCceEE
Confidence 7777543 3356666667788999998765544433334446789999997666666532 125688888876444333
Q ss_pred EEecccCceeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001184 582 TYIGFRKKSAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1130)
Q Consensus 582 ~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~ 660 (1130)
... .......++++++++.|+.+. ..+.|..+|+..... ..+... ......+++.. +.+.++-...+.|...|
T Consensus 161 l~~--~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 161 LVP--NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp EEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred EEC--CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 332 223567799999887777765 467899999876544 333222 22456777765 44444444578888888
Q ss_pred cCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCC
Q 001184 661 NADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDK 740 (1130)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 740 (1130)
..++.. ...+...... ...+ ..+.+. .+.....+. ...+.
T Consensus 235 k~tg~~-~~~l~~~~~~----------p~~i--~v~~~~----------~q~~~n~C~-----------------~~ng~ 274 (628)
T 4a0p_A 235 KTSGQN-RTIIQGHLDY----------VMDI--LVFHSS----------RQSGWNECA-----------------SSNGH 274 (628)
T ss_dssp TTTCCS-CEEEECSCCS----------CCEE--EEECGG----------GSCCCCTTT-----------------TTGGG
T ss_pred CCCCCc-eEEEecCCCC----------ccee--eeeeec----------ccccceEec-----------------cCCCC
Confidence 666522 1222111000 0000 011111 000000000 00000
Q ss_pred ccceeeccccCCcceeEEEecCC-CCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCC
Q 001184 741 TKPWELTEIVDPLQCRVVAMPES-TDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPS 819 (1130)
Q Consensus 741 i~~w~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~ 819 (1130)
..-.-+...... .....+.+ .-.....++. .+ ...++.+ ....|+-..+....
T Consensus 275 C~~~C~~~~~~~---~~C~C~~g~~l~~d~~~C~--~~-~~~Ll~s-~~~~i~~i~l~~~~------------------- 328 (628)
T 4a0p_A 275 CSHLCLAVPVGG---FVCGCPAHYSLNADNRTCS--AP-TTFLLFS-QKSAINRMVIDEQQ------------------- 328 (628)
T ss_dssp CSSEEEEETTTE---EEEECSTTCEECTTSSCEE--CC-SSEEEEE-ETTEEEEECCCTTC-------------------
T ss_pred cchhhhcCCCCC---eeEEcCCCcEecccCCcCc--cc-cceeeee-ccceEEEEeccccc-------------------
Confidence 000000000000 00000000 0000111111 11 2223222 23334332221100
Q ss_pred CCcceeccCCCCCCCceeEEEEecCCCEEEEEe--CCeEEEEECCCceeEEEEeC------CCCCeEEEEEeCCCCcEEE
Q 001184 820 NGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMS------PPPASTFLAFHPQDNNIIA 891 (1130)
Q Consensus 820 ~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~sp~~~~~la 891 (1130)
..... ++-..-..+..++|.+.+..|..+. .+.|+.++.........+.. ....+..+++...++.+..
T Consensus 329 -~~~~~--l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~ 405 (628)
T 4a0p_A 329 -SPDII--LPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYW 405 (628)
T ss_dssp -CCCEE--CCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEE
T ss_pred -CceEE--EEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEE
Confidence 00000 1112235578899999877777766 57899998876443333332 2346889999984455666
Q ss_pred EEeCCCcEEEEEeecCeEEEEE-ecCCCCeeEEEEccCCCeEEEEe-CCC--cEEEEECCCCcccceeeEeccCCCCCCC
Q 001184 892 IGMEDSTIQIYNVRVDEVKTKL-KGHQKHITGLAFSTNLNILVSSG-SDA--QLIFWNTDTWEKRKSIAIQLPAGKLPVG 967 (1130)
Q Consensus 892 sg~~dg~v~iwd~~~~~~~~~l-~~h~~~V~~l~~s~dg~~L~s~s-~Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 967 (1130)
+-+..+.|.+.++. |+....+ ........+|++.|...+|.... ... .|...+++.... ... . .. .-..
T Consensus 406 td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~-~~l-~---~~-~l~~ 478 (628)
T 4a0p_A 406 TCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER-EVL-F---FS-GLSK 478 (628)
T ss_dssp EETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC-EEE-E---CS-SCSC
T ss_pred EcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc-EEE-E---ec-cCCC
Confidence 66677889999986 4444343 34556789999999544444333 232 466666654221 111 1 11 1145
Q ss_pred eEEEEEcCCCcEEEEE--cCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCccccc
Q 001184 968 ETRVQFHSDQVRLLVN--HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRC 1045 (1130)
Q Consensus 968 v~~~~~s~d~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~ 1045 (1130)
...+++++++..|..+ ..+.|..+++.. .....+... ......++++.. +.+..+-...+.|...|-.+|+...
T Consensus 479 P~gla~D~~~~~LYw~D~~~~~I~~~~~dG-~~r~~~~~~--~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~ 554 (628)
T 4a0p_A 479 PIALALDSRLGKLFWADSDLRRIESSDLSG-ANRIVLEDS--NILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRT 554 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECS--SCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCE
T ss_pred ccEEEEeCCCCEEEEEeCCCCEEEEEeCCC-CceEEEEcC--CCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcE
Confidence 6889999988777764 357899999854 434444321 123456777754 4455554456788888888777554
Q ss_pred ccC
Q 001184 1046 RIA 1048 (1130)
Q Consensus 1046 ~~~ 1048 (1130)
.+.
T Consensus 555 ~i~ 557 (628)
T 4a0p_A 555 KVQ 557 (628)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=5.5e-09 Score=114.79 Aligned_cols=225 Identities=12% Similarity=0.005 Sum_probs=149.8
Q ss_pred CEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEe
Q 001184 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF 428 (1130)
Q Consensus 349 ~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~ 428 (1130)
-..+.+|+|+++.+++++..++.|..||..+++... + .....+.+++|+|||+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------H-ALPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------E-ECSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-ECCCcceEEEEeCCCeEEEEE-
Confidence 457889999877788888888999999998876432 1 123479999999999987765
Q ss_pred CCCeEEEEEecCCccceeeeeee-c-CCCCeeEEEEecCCCceEEEEEcC------CCcEEEEecCCCeeeEecCCCcCE
Q 001184 429 TKHLIHLYTYQGSNDLCQSLEID-A-HVGGVNDLAFSYPNKQLCIVTCGD------DKLIRVWDLSGRKLFQFEGHEAPV 500 (1130)
Q Consensus 429 ~d~~i~vwd~~~~~~~~~~~~~~-~-h~~~V~~i~~s~d~~~l~l~s~s~------d~~v~iwd~~~~~~~~~~~h~~~v 500 (1130)
.+ .|.+||..+++.. ...... + ....+.+++++|+|+ ++++... .+.|..++ +++ +..+..+....
T Consensus 108 ~~-gl~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~-~g~-~~~~~~~~~~~ 181 (326)
T 2ghs_A 108 DD-GLFLRDTATGVLT-LHAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA-KGK-VTKLFADISIP 181 (326)
T ss_dssp TT-EEEEEETTTCCEE-EEECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE-TTE-EEEEEEEESSE
T ss_pred CC-CEEEEECCCCcEE-EEeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe-CCc-EEEeeCCCccc
Confidence 44 4999999887632 211111 1 123689999999998 4454432 24555555 443 33333334456
Q ss_pred EEEeecccCCccEEE-EEecCCcEEEEEcc--CC-cc-----eeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEE
Q 001184 501 YSVCPHQKENIHFIF-STAVDGKIKAWLYD--NV-GS-----RVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1130)
Q Consensus 501 ~~~~~~~~~~~~~l~-s~s~dg~i~vwd~~--~~-~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1130)
..++|++ +++.++ +.+.++.|.+|+++ ++ .. ...+......+..++++++|++.++... .+.|.+
T Consensus 182 ~~i~~s~--dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~----~~~v~~ 255 (326)
T 2ghs_A 182 NSICFSP--DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVDR 255 (326)
T ss_dssp EEEEECT--TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEEE
T ss_pred CCeEEcC--CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC----CCEEEE
Confidence 7888864 455554 44567899999986 33 21 1122223445788999999987766542 578999
Q ss_pred eeCCCCceeEEEecccCceeEEEEEc-CCCCEEEEEeCC
Q 001184 572 WNESEGALKRTYIGFRKKSAGVVQFD-TTRNRILAAGED 609 (1130)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d 609 (1130)
||. +++.+..+..... .+.+++|+ ++++.|++++..
T Consensus 256 ~d~-~g~~~~~i~~~~~-~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 256 YDT-DGNHIARYEVPGK-QTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp ECT-TCCEEEEEECSCS-BEEEEEEESTTSCEEEEEEBC
T ss_pred ECC-CCCEEEEEECCCC-CcEEEEEecCCCCEEEEEecC
Confidence 998 6777777765433 68889998 888877665543
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.7e-10 Score=125.23 Aligned_cols=272 Identities=9% Similarity=0.028 Sum_probs=173.8
Q ss_pred cceEEEEEeccCCeEEEeee--CCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCC
Q 001184 768 SKVARLLYTNSGIGILALWS--NGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1130)
Q Consensus 768 ~~i~~l~~s~~g~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1130)
.....++++++|+.+++... ++.+++|.+.. ++.... .-|.. ....+...+..++++++|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~------g~~~~~---p~~~~---------~~~~~~~~p~gv~~d~~g 78 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ------DGLIPF---PPQSG---------NAIITFDTVLGIKSDGNG 78 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET------TEEEES---CCCCS---------SCCCCCSCEEEEEECSSS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECC------CCeecC---CCccc---------CcccceeEeeEEEEcCCC
Confidence 46789999999988777532 34355665531 111000 00000 011356789999999999
Q ss_pred CEEEEEe------CCeEEEEECCCceeEEEEeCC------CCCeEEEEEeCCCCcEEEEEe---CCCcEEEEEeecCeEE
Q 001184 846 SYVMSAG------GGKVSLFNMMNFKVMTTFMSP------PPASTFLAFHPQDNNIIAIGM---EDSTIQIYNVRVDEVK 910 (1130)
Q Consensus 846 ~~la~~~------dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~sp~~~~~lasg~---~dg~v~iwd~~~~~~~ 910 (1130)
+++++.. ++.|.+||+.+++.+..+..+ ......++++++++.++++.. .++.|.+||+.+++..
T Consensus 79 ~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~ 158 (343)
T 2qe8_A 79 IVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAA 158 (343)
T ss_dssp EEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEE
T ss_pred cEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEE
Confidence 8776653 378999999999987777532 234689999984455555555 6789999999999887
Q ss_pred EEEecCCCCee-EEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEc--CCc
Q 001184 911 TKLKGHQKHIT-GLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--ETQ 987 (1130)
Q Consensus 911 ~~l~~h~~~V~-~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d~~ 987 (1130)
..+.+|..... ...++++|..+.+.+.|+.++.|. ..+..++++|||+.|+++. .+.
T Consensus 159 r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------------~~~~gia~s~dg~~ly~~~~~~~~ 218 (343)
T 2qe8_A 159 RVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------------LGVNGIVLDAENEWLYLSPMHSTS 218 (343)
T ss_dssp EECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------------------CCEEEEEECTTSCEEEEEESSCSE
T ss_pred EEecCCCcccccccceeECCEEEEeccCCCceecee--------------------cccceeEeccCCCEEEEEeCCCCe
Confidence 77766533211 145566787787788888876653 2346799999999888753 334
Q ss_pred EEEEECC---Cce-----eee--eeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCC
Q 001184 988 LAIYDGS---KME-----CIR--QWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQAS 1057 (1130)
Q Consensus 988 i~v~d~~---~~~-----~~~--~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 1057 (1130)
+..++.. .+. ... ...++ ......++++++|.++++...++.|.+||..+|+.......
T Consensus 219 l~~~~~~~~~~~~~~~~~~~~~~~~~g~---~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~-------- 287 (343)
T 2qe8_A 219 MYRIKSADLSNLQLTDAELGSKIERYSE---KPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD-------- 287 (343)
T ss_dssp EEEEEHHHHTCTTCCHHHHHTTCEEEEE---CCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC--------
T ss_pred EEEEEHHHhcCCCCChhhhhcceEeccc---CCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC--------
Confidence 5444432 110 000 01111 23456799999999999988899999999856654322210
Q ss_pred CCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 001184 1058 PNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIE 1091 (1130)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~ 1091 (1130)
.....+..+++.++ +.++++.+..+.+-+|.
T Consensus 288 --~~~~~p~~va~~~~-g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 288 --EKLSWTDSFNFGSD-GYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp --GGGSCEEEEEECTT-SCEEEEECCGGGSGGGB
T ss_pred --CceecCCeeEECCC-CcEEEEeCccccccccc
Confidence 11234667888884 77888877655544443
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=8.7e-10 Score=134.88 Aligned_cols=244 Identities=12% Similarity=0.142 Sum_probs=157.6
Q ss_pred cCCCccEEEEEEcCCCCEEEEEe-----CCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCC--
Q 001184 406 KDSSISVSRVAWSPDGNFIGVAF-----TKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK-- 478 (1130)
Q Consensus 406 ~~h~~~V~~v~~spdg~~las~~-----~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~-- 478 (1130)
.+|...+..++|||||++||.+. .+.+|++||+.+|+.+.. .+.+ .....++|+ ||+ .|+.++.+.
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~--~k~~~~~Ws-Dg~--~l~y~~~~~~~ 197 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKD--VKFSGISWL-GNE--GFFYSSYDKPD 197 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEE--EESCCCEEE-TTT--EEEEEESSCCC
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCC--ceeccEEEe-CCC--EEEEEEecCcc
Confidence 35666899999999999999643 235799999999875432 1221 113578999 999 566665553
Q ss_pred -----------cEEEEe-cCCC----eeeEecC-CCcCEEEEeecccCCccEEEEEec----CCcEEEEEccCCc-ceee
Q 001184 479 -----------LIRVWD-LSGR----KLFQFEG-HEAPVYSVCPHQKENIHFIFSTAV----DGKIKAWLYDNVG-SRVD 536 (1130)
Q Consensus 479 -----------~v~iwd-~~~~----~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~----dg~i~vwd~~~~~-~~~~ 536 (1130)
.|++|+ .++. ++..... |.....++.++ +|+++|+.... ++.|.++|+++.. ....
T Consensus 198 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~S--pDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~ 275 (693)
T 3iuj_A 198 GSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVT--EDDRFLLISAANSTSGNRLYVKDLSQENAPLLT 275 (693)
T ss_dssp -------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEEC--TTSCEEEEEEESSSSCCEEEEEETTSTTCCCEE
T ss_pred cccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEc--CCCCEEEEEEccCCCCcEEEEEECCCCCCceEE
Confidence 499999 4332 2333333 44556777775 45666654432 2478999987764 3344
Q ss_pred ecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCce--eEEEecccCceeEEEEEcCCCCEEEEEeCCC---c
Q 001184 537 YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL--KRTYIGFRKKSAGVVQFDTTRNRILAAGEDN---Q 611 (1130)
Q Consensus 537 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~ 611 (1130)
+..+....... ++++|..|+..+......+.|..+|+.++.. .+.+..+... +. .|++++++|+....++ .
T Consensus 276 l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~-~~--~~s~~g~~lv~~~~~~g~~~ 351 (693)
T 3iuj_A 276 VQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ-VL--TVHSGSGYLFAEYMVDATAR 351 (693)
T ss_dssp EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS-CE--EEEEETTEEEEEEEETTEEE
T ss_pred EeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCC-EE--EEEEECCEEEEEEEECCeeE
Confidence 44444444444 6778887776654322357899999988754 3456555553 33 7889999887766544 6
Q ss_pred EEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCC----CcEEEEEcCCC
Q 001184 612 IKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD----QGIKILANADG 664 (1130)
Q Consensus 612 i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~d----g~i~iw~~~~~ 664 (1130)
|++|++..+ ....+.... ...+..+.+++++..++....+ +.+..||+.++
T Consensus 352 l~~~d~~g~-~~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 352 VEQFDYEGK-RVREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EEEECTTSC-EEEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EEEEECCCC-eeEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 899998754 444444332 2245566777888777666554 78899988765
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=8.4e-10 Score=121.18 Aligned_cols=198 Identities=9% Similarity=0.008 Sum_probs=129.4
Q ss_pred eEEEEecCCCEEEEEe---CCeEEE--EECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeec-----
Q 001184 837 PCVALSKNDSYVMSAG---GGKVSL--FNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV----- 906 (1130)
Q Consensus 837 ~~l~~s~dg~~la~~~---dg~i~i--wd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~----- 906 (1130)
..++++|||++++++. ++.|.+ +|+.+ +.++..... ..+.|++...+++.+.||.+.+.++.+
T Consensus 127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp TSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc----eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 4588899998888875 356888 88877 444442211 223453555666777888888888876
Q ss_pred CeEEEE----EecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEecc------CCCCCCCeEEEEEcCC
Q 001184 907 DEVKTK----LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLP------AGKLPVGETRVQFHSD 976 (1130)
Q Consensus 907 ~~~~~~----l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~------~~~~~~~v~~~~~s~d 976 (1130)
++.... +.....+. + ++++..++..+. +.|.+.|+.+............ .+..+.....++++||
T Consensus 200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~d 274 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN 274 (368)
T ss_dssp EECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT
T ss_pred CeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCC
Confidence 443211 11112333 3 667777666666 8999999875332111111110 1111122223789999
Q ss_pred CcEEEEE-c-C--------CcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCC-EEEEEe-CCCcEEEEeCCCcccc
Q 001184 977 QVRLLVN-H-E--------TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQ-LIYATF-TDGSIGVFDADSLRLR 1044 (1130)
Q Consensus 977 ~~~l~~~-~-d--------~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~t~~-~Dg~i~vwd~~~~~~~ 1044 (1130)
++.++++ . . +.+.++|+.+++.+..+... ....+++|+|||+ ++++.. .++.|.|+|+.+++.+
T Consensus 275 g~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg----~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv 350 (368)
T 1mda_H 275 TDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG----HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp TTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE----EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred CCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC----CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence 9988864 3 2 36779999999999988765 3688999999998 455555 5899999999999999
Q ss_pred cccCCC
Q 001184 1045 CRIAPS 1050 (1130)
Q Consensus 1045 ~~~~~~ 1050 (1130)
..+...
T Consensus 351 ~~I~vg 356 (368)
T 1mda_H 351 SSVELD 356 (368)
T ss_dssp EECCCC
T ss_pred EEEECC
Confidence 888643
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=9.4e-09 Score=124.19 Aligned_cols=192 Identities=9% Similarity=0.105 Sum_probs=135.1
Q ss_pred CCeEEEEECCCceeEEEEeCCCCC--------------------------------eEEEEEeCCCCcEEEEEeCCC---
Q 001184 853 GGKVSLFNMMNFKVMTTFMSPPPA--------------------------------STFLAFHPQDNNIIAIGMEDS--- 897 (1130)
Q Consensus 853 dg~i~iwd~~~~~~~~~~~~~~~~--------------------------------i~~l~~sp~~~~~lasg~~dg--- 897 (1130)
+|.|+.||..+++.+..+...... ...++++| ++.+|+++..++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w 267 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPW 267 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccc
Confidence 578889999988888777542211 13578888 667777777664
Q ss_pred ----------------cEEEEEeecCeEEEEEec--CC-------CCeeEEEEccCC---CeEEEEeCCCcEEEEECCCC
Q 001184 898 ----------------TIQIYNVRVDEVKTKLKG--HQ-------KHITGLAFSTNL---NILVSSGSDAQLIFWNTDTW 949 (1130)
Q Consensus 898 ----------------~v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~dg---~~L~s~s~Dg~i~vwd~~~~ 949 (1130)
.|..+|..+|+.+-.++. |. ....-+....|| ..++.++.+|.|+++|..++
T Consensus 268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 499999999998877664 31 112223344577 68999999999999999998
Q ss_pred cccceeeEecc--------CCC---------------------CCCCeEEEEEcCCCcEEEEE-c---------------
Q 001184 950 EKRKSIAIQLP--------AGK---------------------LPVGETRVQFHSDQVRLLVN-H--------------- 984 (1130)
Q Consensus 950 ~~~~~~~~~~~--------~~~---------------------~~~~v~~~~~s~d~~~l~~~-~--------------- 984 (1130)
+.+........ .+. -...-..++++|++.++++. .
T Consensus 348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g 427 (677)
T 1kb0_A 348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFN 427 (677)
T ss_dssp CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTT
T ss_pred CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccc
Confidence 86543321100 000 00011257889998888763 1
Q ss_pred ----------------------------CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 001184 985 ----------------------------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVF 1036 (1130)
Q Consensus 985 ----------------------------d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vw 1036 (1130)
.+.|..||+.+++.+..+... .++.+..++.++.++++++.||.+++|
T Consensus 428 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~g~~~~~g~~v~~g~~dg~l~a~ 503 (677)
T 1kb0_A 428 QAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV----SPWNGGTLTTAGNVVFQGTADGRLVAY 503 (677)
T ss_dssp CCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTSEEEEE
T ss_pred cccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC----CCCcCcceEeCCCEEEEECCCCcEEEE
Confidence 167999999999998877543 345556677788899999999999999
Q ss_pred eCCCcccccccCC
Q 001184 1037 DADSLRLRCRIAP 1049 (1130)
Q Consensus 1037 d~~~~~~~~~~~~ 1049 (1130)
|..+|+.+..+..
T Consensus 504 D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 504 HAATGEKLWEAPT 516 (677)
T ss_dssp ETTTCCEEEEEEC
T ss_pred ECCCCceeeeeeC
Confidence 9999999988763
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.13 E-value=9.5e-09 Score=111.83 Aligned_cols=233 Identities=12% Similarity=0.076 Sum_probs=152.0
Q ss_pred CCCccEEEEEEcCCCC-EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEec
Q 001184 407 DSSISVSRVAWSPDGN-FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL 485 (1130)
Q Consensus 407 ~h~~~V~~v~~spdg~-~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~ 485 (1130)
.........+|+|+|+ +++++..++.|..|+. +++ .. .+..+...+..++++++|+ ++++...++.|.+||.
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRSDA 114 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEECT
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEECC
Confidence 4445678899999999 5666677889999987 443 22 3444667799999999998 6666666788999996
Q ss_pred CCCeeeEecCC-----CcCEEEEeecccCCccEEEE----Eec-------------CCcEEEEEccCCcceeeecCCCcc
Q 001184 486 SGRKLFQFEGH-----EAPVYSVCPHQKENIHFIFS----TAV-------------DGKIKAWLYDNVGSRVDYDAPGLW 543 (1130)
Q Consensus 486 ~~~~~~~~~~h-----~~~v~~~~~~~~~~~~~l~s----~s~-------------dg~i~vwd~~~~~~~~~~~~~~~~ 543 (1130)
+|+.. .+..+ ...+..+++. ++|.+.++ |.. .+.|..||..+++..... ....
T Consensus 115 ~g~~~-~~~~~~~~~~~~~~~~i~~d--~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~ 189 (305)
T 3dr2_A 115 DGQAH-LLVGRYAGKRLNSPNDLIVA--RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDH 189 (305)
T ss_dssp TSCEE-EEECEETTEECSCCCCEEEC--TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESS
T ss_pred CCCEE-EEEeccCCCccCCCCCEEEC--CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCC
Confidence 56543 22211 1235567775 46677775 321 245666666544433322 3345
Q ss_pred EEEEEEecCCCeEEEeeecC--CCCcEEEEeeCCCCcee--EEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001184 544 CTTMLYSADGSRLFSCGTSK--EGDSHLVEWNESEGALK--RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1130)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~--~~~~~i~~wd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 619 (1130)
...++|+||++.|+++.... .+.+.|++|++..+... ..+..........++++++|+. .+++.+ .|.+|+. .
T Consensus 190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l-wv~~~~-gv~~~~~-~ 266 (305)
T 3dr2_A 190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL-WSSSGT-GVCVFDS-D 266 (305)
T ss_dssp EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE-EECCSS-EEEEECT-T
T ss_pred CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE-EEecCC-cEEEECC-C
Confidence 68899999999887775310 01268999998755421 1221111223446889999984 444444 5999998 5
Q ss_pred CceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 001184 620 VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIK 657 (1130)
Q Consensus 620 ~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~ 657 (1130)
++.+..+..+. .+.+++|+++++.|++++.++..+
T Consensus 267 g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 267 GQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp SCEEEEEECSS---CCCEEEECTTSCEEEEEETTEEEE
T ss_pred CCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 77777776544 478999999999998888765443
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.13 E-value=1e-09 Score=120.63 Aligned_cols=183 Identities=13% Similarity=0.115 Sum_probs=132.6
Q ss_pred CEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEe
Q 001184 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF 428 (1130)
Q Consensus 349 ~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~ 428 (1130)
.++.+++++... ++++|+.+ .++||+++..+...... .. . .+......+.. |+.++| |+++|+++
T Consensus 39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~------~~-~--~~~~~~~~lp~-V~~l~f--d~~~L~v~- 103 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSD------ST-P--LTFKWEKEIPD-VIFVCF--HGDQVLVS- 103 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSS------SC-C--CCCSEEEECTT-EEEEEE--ETTEEEEE-
T ss_pred cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhccc------cc-c--ccceEEeeCCC-eeEEEE--CCCEEEEE-
Confidence 689999999998 68888877 56669986544111000 00 0 00101224556 999999 99999999
Q ss_pred CCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecc
Q 001184 429 TKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQ 507 (1130)
Q Consensus 429 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~ 507 (1130)
.++.|++||+.+-.... ....|...+.++.+.+. -+++++.||.|.+|| .++.... +...|.+++|++
T Consensus 104 ~~~~l~v~dv~sl~~~~---~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSp 172 (388)
T 1xip_A 104 TRNALYSLDLEELSEFR---TVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTN 172 (388)
T ss_dssp ESSEEEEEESSSTTCEE---EEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECS
T ss_pred cCCcEEEEEchhhhccC---ccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcC
Confidence 88999999998765332 45667788988887754 278888999999999 5555532 457899999976
Q ss_pred cCCccEEEEEecCCcEEEEEccCCcc--eeee------c---CCCccEEEEEEecCCCeEEEeee
Q 001184 508 KENIHFIFSTAVDGKIKAWLYDNVGS--RVDY------D---APGLWCTTMLYSADGSRLFSCGT 561 (1130)
Q Consensus 508 ~~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~------~---~~~~~v~~~~~s~~~~~l~~~~~ 561 (1130)
.+ ++.|..||++++|+.+.... ...+ . .+...|.++.|.+++.++++-..
T Consensus 173 kG----~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~ 233 (388)
T 1xip_A 173 SQ----LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGN 233 (388)
T ss_dssp SE----EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred Cc----eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence 44 67899999999999887664 3334 2 35678999999999998887553
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.12 E-value=6.4e-09 Score=125.96 Aligned_cols=192 Identities=17% Similarity=0.200 Sum_probs=132.6
Q ss_pred CCeEEEEECCCceeEEEEeCCC-------------------------------CCeEEEEEeCCCCcEEEEEeCCCc---
Q 001184 853 GGKVSLFNMMNFKVMTTFMSPP-------------------------------PASTFLAFHPQDNNIIAIGMEDST--- 898 (1130)
Q Consensus 853 dg~i~iwd~~~~~~~~~~~~~~-------------------------------~~i~~l~~sp~~~~~lasg~~dg~--- 898 (1130)
+|.|+.||..+|+.+-.+.... .....++++| +..++++++.++.
T Consensus 182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~ 260 (689)
T 1yiq_A 182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWD 260 (689)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccc
Confidence 5778888888888877765210 0112578888 6778888887764
Q ss_pred ----------------EEEEEeecCeEEEEEec--CC-------CCeeEEEEccCCC---eEEEEeCCCcEEEEECCCCc
Q 001184 899 ----------------IQIYNVRVDEVKTKLKG--HQ-------KHITGLAFSTNLN---ILVSSGSDAQLIFWNTDTWE 950 (1130)
Q Consensus 899 ----------------v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~dg~---~L~s~s~Dg~i~vwd~~~~~ 950 (1130)
|..+|.++|+.+-.++. |. .++.-.....+|+ .++.++.+|.++++|..+++
T Consensus 261 ~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 340 (689)
T 1yiq_A 261 PKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE 340 (689)
T ss_dssp HHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence 99999999999887764 22 1222222333665 78899999999999999988
Q ss_pred ccceeeEec------------------------cCCC---------CCCCeEEEEEcCCCcEEEEE-c------------
Q 001184 951 KRKSIAIQL------------------------PAGK---------LPVGETRVQFHSDQVRLLVN-H------------ 984 (1130)
Q Consensus 951 ~~~~~~~~~------------------------~~~~---------~~~~v~~~~~s~d~~~l~~~-~------------ 984 (1130)
.+....... +... -...-..++++|+..++++. .
T Consensus 341 ~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~ 420 (689)
T 1yiq_A 341 LLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEA 420 (689)
T ss_dssp EEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSC
T ss_pred EeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccc
Confidence 652211100 0000 00011237888888877763 1
Q ss_pred ---------------------------------CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCC
Q 001184 985 ---------------------------------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG 1031 (1130)
Q Consensus 985 ---------------------------------d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg 1031 (1130)
++.+..||+.+|+.+..+..+ .++....++..+.++++++.||
T Consensus 421 ~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~g~~~tagglvf~gt~dg 496 (689)
T 1yiq_A 421 PKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV----TIFNGGTLSTAGNLVFEGSADG 496 (689)
T ss_dssp CCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTS
T ss_pred ccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC----CCccCccceECCCEEEEECCCC
Confidence 267999999999998887654 2334446667888999999999
Q ss_pred cEEEEeCCCcccccccCC
Q 001184 1032 SIGVFDADSLRLRCRIAP 1049 (1130)
Q Consensus 1032 ~i~vwd~~~~~~~~~~~~ 1049 (1130)
.++.||.++|+.+.++..
T Consensus 497 ~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 497 RVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp EEEEEETTTCCEEEEEEC
T ss_pred cEEEEECCCCccceeeeC
Confidence 999999999999877763
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.9e-09 Score=116.90 Aligned_cols=266 Identities=8% Similarity=-0.070 Sum_probs=168.5
Q ss_pred eEEEEEeCcC----eEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEe--------
Q 001184 361 TLLVVGCGDG----EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF-------- 428 (1130)
Q Consensus 361 ~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~-------- 428 (1130)
+++++-..++ +|.++|..+++.+.. +-.+. .+ .+++||||+++.++.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~------------------i~vG~-~P--~i~~spDg~~lyVan~~~~r~~~ 91 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGH------------------SLGAF-LS--LAVAGHSGSDFALASTSFARSAK 91 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEE------------------EEECT-TC--EEEECTTSSCEEEEEEEETTTTS
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEE------------------EeCCC-CC--ceEECCCCCEEEEEccccccccc
Confidence 4555555455 888999999998863 12233 24 799999999998886
Q ss_pred --CCCeEEEEEecCCccceeeeeeec-C----CCCeeEEEEecCCCceEEEEEc--CCCcEEE--Ee-cCCCeeeEecCC
Q 001184 429 --TKHLIHLYTYQGSNDLCQSLEIDA-H----VGGVNDLAFSYPNKQLCIVTCG--DDKLIRV--WD-LSGRKLFQFEGH 496 (1130)
Q Consensus 429 --~d~~i~vwd~~~~~~~~~~~~~~~-h----~~~V~~i~~s~d~~~l~l~s~s--~d~~v~i--wd-~~~~~~~~~~~h 496 (1130)
.++.|.+||..+++.+.... +.+ . ......++|+|||++ ++.+. .+..|.+ +| .+ +..+.-
T Consensus 92 G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~--lyVan~~~~~~v~V~~iD~~t---v~~i~v- 164 (368)
T 1mda_H 92 GKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC--LLFFLFGSSAAAGLSVPGASD---DQLTKS- 164 (368)
T ss_dssp SSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC--EEEEECSSSCEEEEEETTTEE---EEEEEC-
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEccCCCCeEEEEEEchhh---ceEEEC-
Confidence 36889999999988665321 210 0 124678999999995 44443 3567888 99 44 444431
Q ss_pred CcCEEEEeecccCCccEEEEEecCCcEEEEEccC----Cccee-----eecCCCccEEEEEEecCCCeEEEeeecCCCCc
Q 001184 497 EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN----VGSRV-----DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDS 567 (1130)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~----~~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 567 (1130)
.+. ..+.+.+. ..+++.+.||.+.+.|+++ ..... .+.....+. . .+++..++..+. +
T Consensus 165 ~~~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-----~ 231 (368)
T 1mda_H 165 ASC---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-----S 231 (368)
T ss_dssp SSC---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-----S
T ss_pred CCc---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-----C
Confidence 111 11223332 3455667888888888876 22221 111122233 3 666776666642 6
Q ss_pred EEEEeeCCCCc--eeEEEecc---------cCceeEEEEEcCCCCEEEEEeC---------CCcEEEEeCCCCceeEEEe
Q 001184 568 HLVEWNESEGA--LKRTYIGF---------RKKSAGVVQFDTTRNRILAAGE---------DNQIKFWDMDNVNMLTSTE 627 (1130)
Q Consensus 568 ~i~~wd~~~~~--~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~ 627 (1130)
.+.+.|..++. .+..+.-. .......++++|++++++.+.. ++.+.++|+.+.+.+..+.
T Consensus 232 ~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~ 311 (368)
T 1mda_H 232 SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS 311 (368)
T ss_dssp CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE
T ss_pred EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE
Confidence 78888876532 22221100 0001222679999998887643 2356699999999988887
Q ss_pred ccCCCCCcceEEEcCCCC-EEEEEe-CCCcEEEEEcCCCchhhhhh
Q 001184 628 AEGGLPSLPRLRFNKEGN-LLVVTT-ADQGIKILANADGLRALRAI 671 (1130)
Q Consensus 628 ~~~~~~~i~~v~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~~ 671 (1130)
... ....++|+|||+ ++++.. .++.|.++|+.+. +..+.+
T Consensus 312 vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I 353 (368)
T 1mda_H 312 NGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSV 353 (368)
T ss_dssp EEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEEC
T ss_pred CCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCC-cEEEEE
Confidence 654 468999999997 556666 5899999999887 444433
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=5e-08 Score=107.06 Aligned_cols=223 Identities=14% Similarity=0.050 Sum_probs=144.0
Q ss_pred EEEEEEcCCCC-EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCe
Q 001184 412 VSRVAWSPDGN-FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRK 489 (1130)
Q Consensus 412 V~~v~~spdg~-~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~ 489 (1130)
..+.+|+|++. ++++...++.|..||..+++.. .+. ....+.+++|+++|+ ++++. . ..|.+|| .+++.
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~----~~~-~~~~v~~i~~~~dg~--l~v~~-~-~gl~~~d~~~g~~ 121 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT----VHA-LPFMGSALAKISDSK--QLIAS-D-DGLFLRDTATGVL 121 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE----EEE-CSSCEEEEEEEETTE--EEEEE-T-TEEEEEETTTCCE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE----EEE-CCCcceEEEEeCCCe--EEEEE-C-CCEEEEECCCCcE
Confidence 45788999855 5566667889999999886532 122 345799999999998 55554 3 3499999 55554
Q ss_pred eeEecCC-----CcCEEEEeecccCCccEEEEEecC----CcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEee
Q 001184 490 LFQFEGH-----EAPVYSVCPHQKENIHFIFSTAVD----GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCG 560 (1130)
Q Consensus 490 ~~~~~~h-----~~~v~~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1130)
. .+... ...+..+++++ ++.++++...+ +...+|.++. .....+.........++|+|||+.++.+.
T Consensus 122 ~-~~~~~~~~~~~~~~~~i~~d~--~G~l~v~~~~~~~~~~~~~l~~~~~-g~~~~~~~~~~~~~~i~~s~dg~~lyv~~ 197 (326)
T 2ghs_A 122 T-LHAELESDLPGNRSNDGRMHP--SGALWIGTMGRKAETGAGSIYHVAK-GKVTKLFADISIPNSICFSPDGTTGYFVD 197 (326)
T ss_dssp E-EEECSSTTCTTEEEEEEEECT--TSCEEEEEEETTCCTTCEEEEEEET-TEEEEEEEEESSEEEEEECTTSCEEEEEE
T ss_pred E-EEeeCCCCCCCCCCCCEEECC--CCCEEEEeCCCcCCCCceEEEEEeC-CcEEEeeCCCcccCCeEEcCCCCEEEEEE
Confidence 3 33221 23577888865 55665544322 2334444443 22222222223467899999999877664
Q ss_pred ecCCCCcEEEEeeCC--CC-cee--EEEec--ccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCC
Q 001184 561 TSKEGDSHLVEWNES--EG-ALK--RTYIG--FRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLP 633 (1130)
Q Consensus 561 ~~~~~~~~i~~wd~~--~~-~~~--~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 633 (1130)
. ..+.|++||.. ++ ... +.+.. ........++++++|+++++...++.|.+||. +++.+..+..+..
T Consensus 198 ~---~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~-- 271 (326)
T 2ghs_A 198 T---KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGK-- 271 (326)
T ss_dssp T---TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCS--
T ss_pred C---CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCC--
Confidence 2 26789999975 55 321 22221 11235667899999987777767789999998 6777777665432
Q ss_pred CcceEEEc-CCCCEEEEEeCC
Q 001184 634 SLPRLRFN-KEGNLLVVTTAD 653 (1130)
Q Consensus 634 ~i~~v~~s-~~~~~l~~~~~d 653 (1130)
.+.+++|+ +++..|++++..
T Consensus 272 ~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 272 QTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp BEEEEEEESTTSCEEEEEEBC
T ss_pred CcEEEEEecCCCCEEEEEecC
Confidence 58899998 888877666544
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=2.3e-08 Score=120.83 Aligned_cols=327 Identities=13% Similarity=0.079 Sum_probs=189.9
Q ss_pred cEEEEEecCCcEEEEEccCCcceeeecCCCcc-----------EEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCcee
Q 001184 512 HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLW-----------CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK 580 (1130)
Q Consensus 512 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-----------v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1130)
..++.++.++.|..+|..+++.+..+...... ...+++ ++..+++++. ++.|+.+|..+|+.+
T Consensus 78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~----dg~l~alD~~tG~~~ 151 (677)
T 1kb0_A 78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAW----DGRLIALDAATGKEV 151 (677)
T ss_dssp TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCCEE
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcC----CCEEEEEECCCCCEE
Confidence 46777777888888888888887766544220 112233 4556766654 889999999999999
Q ss_pred EEEecc-cC---ceeE-EEEEcCCCCEEEEEeC------CCcEEEEeCCCCceeEEEeccCCC-----------------
Q 001184 581 RTYIGF-RK---KSAG-VVQFDTTRNRILAAGE------DNQIKFWDMDNVNMLTSTEAEGGL----------------- 632 (1130)
Q Consensus 581 ~~~~~~-~~---~~v~-~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~----------------- 632 (1130)
..+... .. ..+. ...+ .+..+++++. ++.|+.||..+|+.+..+......
T Consensus 152 W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w 229 (677)
T 1kb0_A 152 WHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (677)
T ss_dssp EEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred eeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence 888754 10 1111 1111 2355666553 699999999999998877653221
Q ss_pred -------------CCcceEEEcCCCCEEEEEeCCCc-------------------EEEEEcCCCchhhhhhccccccccc
Q 001184 633 -------------PSLPRLRFNKEGNLLVVTTADQG-------------------IKILANADGLRALRAIETRAYETSR 680 (1130)
Q Consensus 633 -------------~~i~~v~~s~~~~~l~~~~~dg~-------------------i~iw~~~~~~~~~~~~~~~~~~~~~ 680 (1130)
.....++++|++..+++++.++. |..+|..++.
T Consensus 230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~--------------- 294 (677)
T 1kb0_A 230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGK--------------- 294 (677)
T ss_dssp CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC---------------
T ss_pred cccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCC---------------
Confidence 01135788888888888876653 3333333221
Q ss_pred ccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEe
Q 001184 681 ASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAM 760 (1130)
Q Consensus 681 ~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 760 (1130)
.+|.........-
T Consensus 295 -------------------------------------------------------------~~W~~~~~~~d~w------ 307 (677)
T 1kb0_A 295 -------------------------------------------------------------YKWHYQETPGDNW------ 307 (677)
T ss_dssp -------------------------------------------------------------EEEEEESSTTCCS------
T ss_pred -------------------------------------------------------------EEEEEecCCCccc------
Confidence 1232221000000
Q ss_pred cCCCCCccceEEEEEeccC---CeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCccee-----------c
Q 001184 761 PESTDSASKVARLLYTNSG---IGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMT-----------N 826 (1130)
Q Consensus 761 ~~~~~~~~~i~~l~~s~~g---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-----------~ 826 (1130)
. -.......-+....+| ..++.++.+|.+.++|..+++..-........-..-+| .+++.+. .
T Consensus 308 -d-~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d-~~g~~~~~~~~~~~~~~~~ 384 (677)
T 1kb0_A 308 -D-YTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD-KHGKPIGIAAARDGSKPQD 384 (677)
T ss_dssp -C-CCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC-TTSCEEECGGGGCTTSCEE
T ss_pred -c-cccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccC-CCCceeeccccCcCCCccE
Confidence 0 0001112222333466 56777888899988887665431100000000000012 2222211 0
Q ss_pred cCCC--CCCCceeEEEEecCCCEEEEEe-C-------------------------------------------CeEEEEE
Q 001184 827 DVPE--NAEDVVPCVALSKNDSYVMSAG-G-------------------------------------------GKVSLFN 860 (1130)
Q Consensus 827 ~~~~--~~~~~i~~l~~s~dg~~la~~~-d-------------------------------------------g~i~iwd 860 (1130)
..+. +... -..++++|++.++++.. + |.|..||
T Consensus 385 ~~P~~~G~~~-w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D 463 (677)
T 1kb0_A 385 AVPGPYGAHN-WHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWD 463 (677)
T ss_dssp CSSCTTCSSC-SSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEE
T ss_pred ECcCcccccC-CCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEe
Confidence 0111 1111 13678899888887643 1 6799999
Q ss_pred CCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCC-CCeeEEEEccCCCeEEE
Q 001184 861 MMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQ-KHITGLAFSTNLNILVS 934 (1130)
Q Consensus 861 ~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~dg~~L~s 934 (1130)
+.+++.+..+... ..+....++. ++.++++++.||.+++||..+++.+.++.... ....-+.|..+|+.++.
T Consensus 464 ~~tG~~~W~~~~~-~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 464 PVAQKAAWSVEHV-SPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp TTTTEEEEEEEES-SSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCCCcEEeecCCC-CCCcCcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 9999998887643 3344445566 56678889999999999999999999887443 23345667788875554
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.09 E-value=6.5e-08 Score=108.91 Aligned_cols=307 Identities=11% Similarity=0.040 Sum_probs=181.0
Q ss_pred cEEEEEecCCcEEEEEccCCcceeeecCCC---------ccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEE
Q 001184 512 HFIFSTAVDGKIKAWLYDNVGSRVDYDAPG---------LWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582 (1130)
Q Consensus 512 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1130)
..++.++.++.|..+|.++++......... ..+.+.. ..++..+++++. ++.|+.+|..+|+.+..
T Consensus 54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~----~g~l~a~d~~tG~~~W~ 128 (376)
T 3q7m_A 54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSE----KAQVYALNTSDGTVAWQ 128 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEET----TSEEEEEETTTCCEEEE
T ss_pred CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcC----CCEEEEEECCCCCEEEE
Confidence 577888888999999998888876655432 2232222 223456666654 78999999999998877
Q ss_pred EecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCC---cceEEEcCCCCEEEEEeCCCcEEEE
Q 001184 583 YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPS---LPRLRFNKEGNLLVVTTADQGIKIL 659 (1130)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---i~~v~~s~~~~~l~~~~~dg~i~iw 659 (1130)
+..... ........ +..+++++.++.|+.+|..+|+.+........... ....... +..+++++.++.+..+
T Consensus 129 ~~~~~~-~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~ 203 (376)
T 3q7m_A 129 TKVAGE-ALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAV 203 (376)
T ss_dssp EECSSC-CCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEE
T ss_pred EeCCCc-eEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEE
Confidence 664322 11112222 45888899999999999999998877765432100 0122222 4467788889999999
Q ss_pred EcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCC
Q 001184 660 ANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISD 739 (1130)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 739 (1130)
|..++....+.-... |. +
T Consensus 204 d~~tG~~~w~~~~~~-----------------------~~---------------------------------------~ 221 (376)
T 3q7m_A 204 LMEQGQMIWQQRISQ-----------------------AT---------------------------------------G 221 (376)
T ss_dssp ETTTCCEEEEEECCC-----------------------------------------------------------------
T ss_pred ECCCCcEEEEEeccc-----------------------CC---------------------------------------C
Confidence 988773322110000 00 0
Q ss_pred CccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCC
Q 001184 740 KTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPS 819 (1130)
Q Consensus 740 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~ 819 (1130)
...+..+.. .....+ + .+..+++++.++.+..+|..
T Consensus 222 ~~~~~~~~~----------------~~~~p~----~--~~~~v~~~~~~g~l~~~d~~---------------------- 257 (376)
T 3q7m_A 222 STEIDRLSD----------------VDTTPV----V--VNGVVFALAYNGNLTALDLR---------------------- 257 (376)
T ss_dssp --------C----------------CCCCCE----E--ETTEEEEECTTSCEEEEETT----------------------
T ss_pred Ccccccccc----------------cCCCcE----E--ECCEEEEEecCcEEEEEECC----------------------
Confidence 000000000 000000 0 13445666666777666543
Q ss_pred CCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeC-CCCCeEEEEEeCCCCcEEEEEeCCC
Q 001184 820 NGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMS-PPPASTFLAFHPQDNNIIAIGMEDS 897 (1130)
Q Consensus 820 ~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~sp~~~~~lasg~~dg 897 (1130)
+|+...... ......+.. ++..+.++. ++.|..+|..+++.+..... ........... +..|++++.+|
T Consensus 258 tG~~~w~~~----~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~---~~~l~v~~~~g 328 (376)
T 3q7m_A 258 SGQIMWKRE----LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY---NGNLVVGDSEG 328 (376)
T ss_dssp TCCEEEEEC----CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE---TTEEEEECTTS
T ss_pred CCcEEeecc----CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE---CCEEEEEeCCC
Confidence 233222111 112233333 344555555 78999999999998877662 22233334443 24677888999
Q ss_pred cEEEEEeecCeEEEEEecCCCCeeE-EEEccCCCeEEEEeCCCcEEEEE
Q 001184 898 TIQIYNVRVDEVKTKLKGHQKHITG-LAFSTNLNILVSSGSDAQLIFWN 945 (1130)
Q Consensus 898 ~v~iwd~~~~~~~~~l~~h~~~V~~-l~~s~dg~~L~s~s~Dg~i~vwd 945 (1130)
.|+++|..+++.+.........+.+ ... .+..|+.++.+|.|..|+
T Consensus 329 ~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 329 YLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred eEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 9999999999988877654444432 222 256788899999999886
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=6.8e-05 Score=88.91 Aligned_cols=526 Identities=9% Similarity=-0.017 Sum_probs=271.4
Q ss_pred CcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEe-CCCeEEEEEecCCcccee
Q 001184 368 GDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF-TKHLIHLYTYQGSNDLCQ 446 (1130)
Q Consensus 368 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~-~d~~i~vwd~~~~~~~~~ 446 (1130)
....|+..|+........ .....-..+..++|++.+..|..+. ..+.|..+++.+.....
T Consensus 16 ~~~~I~~i~~~~~~~~~~------------------~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~- 76 (619)
T 3s94_A 16 NRRDLRLVDATNGKENAT------------------IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ- 76 (619)
T ss_dssp CSSBEEEECCC---------------------------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CE-
T ss_pred ccccEEEEeCCCCcceEE------------------EEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceE-
Confidence 456888888875431110 1122334578999999777666554 46788889987653211
Q ss_pred eeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEec-CCCcCEEEEeecccCCccEEEEE-ecCCcEE
Q 001184 447 SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE-GHEAPVYSVCPHQKENIHFIFST-AVDGKIK 524 (1130)
Q Consensus 447 ~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~-s~dg~i~ 524 (1130)
..+.........+++.+.++. +.++-...+.|.+.+.+|.....+. ..-.....+++.|.. +.++++- +..+.|.
T Consensus 77 -~v~~~~~~~P~GlAvD~~~~~-ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~-g~ly~tD~g~~~~I~ 153 (619)
T 3s94_A 77 -NVVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS-GFMYWTDWGEVPKIE 153 (619)
T ss_dssp -EEECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTT-TEEEEEECSSSCEEE
T ss_pred -EEEeCCCCCcCeEEEEecCCE-EEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCC-CeEEEeccCCCCEEE
Confidence 122323356889999997664 5566677889999997777655554 344556778886543 3344443 2245676
Q ss_pred EEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEE
Q 001184 525 AWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRIL 604 (1130)
Q Consensus 525 vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 604 (1130)
..+++.................+++++++..|+.+-. ..+.|...|+..........+... ....+++..+ .++
T Consensus 154 r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~---~~~~I~~~~~dG~~~~~~~~~~~~-~P~gi~~~~~--~ly 227 (619)
T 3s94_A 154 RAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSLP-HPFALTLFED--ILY 227 (619)
T ss_dssp EEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEET---TTCCEEEESSSCCEEC----------CCCEEESSS--EEE
T ss_pred EEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeC---CCCeEEEecCCCCccEEEEeCCCC-CceEEEEeCC--EEE
Confidence 6676654444444344557899999998888887743 367899998865433332221111 2234566544 444
Q ss_pred EE-eCCCcEEEEeCCCCceeEEEeccCCCCCcceEEE-cCCCCEEEEEeCCCcEEEEEcCCCchhhhhhccccccccccc
Q 001184 605 AA-GEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRF-NKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRAS 682 (1130)
Q Consensus 605 ~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~-s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 682 (1130)
.+ ...+.|...|..+++....+..... ....+.+ +|..+- .+ .. .+...-.+..
T Consensus 228 ~td~~~~~V~~~d~~tg~~~~~i~~~~~--~p~~i~v~~~~~qp--~~------------~n-~C~~~ng~Cs------- 283 (619)
T 3s94_A 228 WTDWSTHSILACNKYTGEGLREIHSDIF--SPMDIHAFSQQRQP--NA------------TN-PCGIDNGGCS------- 283 (619)
T ss_dssp EECTTTCSEEEEESSSCCCCEECCSCCC--CCSEEEECCGGGSC--CC------------CC-TTTTTGGGCS-------
T ss_pred EecCCCCEEEEEECCCCcccEEEecCCC--CCcEEEEEccccCC--Cc------------cc-cccCCCCccc-------
Confidence 44 4567888888888776555432211 2223322 111000 00 00 0000000000
Q ss_pred ccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecC
Q 001184 683 TEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPE 762 (1130)
Q Consensus 683 ~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 762 (1130)
.....+|.. ..-....+.+-.+. .|+.. |.
T Consensus 284 ---------~lCl~~~~~-------------------~~~~C~C~~g~~l~---~d~~~-------------C~------ 313 (619)
T 3s94_A 284 ---------HLCLMSPVK-------------------PFYQCACPTGVKLL---ENGKT-------------CK------ 313 (619)
T ss_dssp ---------SEEEECSST-------------------TSEEEECCTTCCBC---TTSSC-------------BC------
T ss_pred ---------ceEECCCCC-------------------CCceEeCCchheec---ccCcc-------------cC------
Confidence 000001100 00000000000000 00000 00
Q ss_pred CCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEe
Q 001184 763 STDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALS 842 (1130)
Q Consensus 763 ~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s 842 (1130)
+....++..+..+.|+..++...... ... ++-..-..+.+++++
T Consensus 314 --------------~~~~~~Ll~~~~~~i~~i~l~~~~~~--------------------~~~--~~~~~l~~~~~ld~d 357 (619)
T 3s94_A 314 --------------DGATELLLLARRTDLRRISLDTPDFT--------------------DIV--LQLEDIRHAIAIDYD 357 (619)
T ss_dssp --------------SSCSEEEEEEESSCEEEEESSSTTCC--------------------CEE--CCCSCCSSEEEEEEE
T ss_pred --------------CCCceEEEEEcccceEEEecCCCccc--------------------eeE--EeccccCccEEEEEE
Confidence 00111222223344544443321110 000 000123457789999
Q ss_pred cCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCe
Q 001184 843 KNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHI 920 (1130)
Q Consensus 843 ~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V 920 (1130)
+.+..|..+. .+.|+.+++.+......+...-.....+++.+.++++..+-+..+.|.+.++........+...-...
T Consensus 358 ~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P 437 (619)
T 3s94_A 358 PVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEP 437 (619)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSE
T ss_pred cCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCe
Confidence 8766666665 68899999887544444444445677899987456666666667889999887553322233344568
Q ss_pred eEEEEccCCCeEEEEeC--CCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE--cCCcEEEEECCCc
Q 001184 921 TGLAFSTNLNILVSSGS--DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN--HETQLAIYDGSKM 996 (1130)
Q Consensus 921 ~~l~~s~dg~~L~s~s~--Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~--~d~~i~v~d~~~~ 996 (1130)
.+|++.|....|..+.. ...|...+++..... . +. .. .-.....+++++++..|..+ ..+.|..+++...
T Consensus 438 ~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~-~--l~--~~-~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~ 511 (619)
T 3s94_A 438 RAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRV-V--LV--NT-SLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGT 511 (619)
T ss_dssp EEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-E--EE--CS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSC
T ss_pred eeEEEEcCCCcEEEecCCCCCEEEEEccCCCccE-E--EE--eC-CCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCC
Confidence 89999997556655543 356666666643211 1 11 11 11456789999877777764 4567888888643
Q ss_pred eeeeeeecCCCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEeCCCcc
Q 001184 997 ECIRQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLR 1042 (1130)
Q Consensus 997 ~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~-~Dg~i~vwd~~~~~ 1042 (1130)
.......... ....++++..+ +|+.+. ..+.|...|..+|.
T Consensus 512 ~~~~~~~~~l---~~P~glav~~~--~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 512 GRRVLVEDKI---PHIFGFTLLGD--YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp CCEEEEECCC---CSSCCEEEETT--EEEEECTTSSCEEEEESSSCC
T ss_pred ceEEEeccCC---CCcEEEEEECC--EEEEeecCCCeEEEEEcCCCc
Confidence 3322222221 22235555433 454444 45667777777763
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.6e-08 Score=120.59 Aligned_cols=82 Identities=10% Similarity=0.046 Sum_probs=61.0
Q ss_pred CeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCe-eEEEEccCCCeE
Q 001184 854 GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHI-TGLAFSTNLNIL 932 (1130)
Q Consensus 854 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~s~dg~~L 932 (1130)
|.|..||+.+++.+..+..+.. ...-.++. .+.++++|+.||.|+.||.++|+.+.+++...+.+ .-+.|..||+..
T Consensus 455 g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qy 532 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPYVTI-FNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQY 532 (689)
T ss_dssp EEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred eeEEEEECCCCCeEeEccCCCC-ccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEE
Confidence 6799999999999988875543 22234555 56688899999999999999999998887554332 457788888744
Q ss_pred -EEEeC
Q 001184 933 -VSSGS 937 (1130)
Q Consensus 933 -~s~s~ 937 (1130)
++.+.
T Consensus 533 v~~~~G 538 (689)
T 1yiq_A 533 VTFMAG 538 (689)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 44443
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=4.3e-05 Score=90.60 Aligned_cols=525 Identities=10% Similarity=0.038 Sum_probs=272.0
Q ss_pred CCeEEEEEecCCc-cceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCe--eeEecCCCcCEEEEeec
Q 001184 430 KHLIHLYTYQGSN-DLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRK--LFQFEGHEAPVYSVCPH 506 (1130)
Q Consensus 430 d~~i~vwd~~~~~-~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~--~~~~~~h~~~v~~~~~~ 506 (1130)
...|+..|+.+.. ... .+......+..++|.+.+.. ++++-...+.|..++.+|.. ...+...-.....+++.
T Consensus 17 ~~~I~~i~~~~~~~~~~---~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD 92 (619)
T 3s94_A 17 RRDLRLVDATNGKENAT---IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACD 92 (619)
T ss_dssp SSBEEEECCC------------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEE
T ss_pred cccEEEEeCCCCcceEE---EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEE
Confidence 4568888887542 111 12223445789999997774 44555567788888855542 22333333567888886
Q ss_pred ccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecc
Q 001184 507 QKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGF 586 (1130)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1130)
+. ++.+.++-...+.|.+.+++.................+++.|.+.+|+.+-. ...+.|...++. |.....+...
T Consensus 93 ~~-~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~--g~~~~I~r~~~d-G~~~~~l~~~ 168 (619)
T 3s94_A 93 WL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW--GEVPKIERAGMD-GSSRFIIINS 168 (619)
T ss_dssp TT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEEC--SSSCEEEEEETT-SCSCEEEECS
T ss_pred ec-CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEecc--CCCCEEEEEECC-CCceEEEEeC
Confidence 53 3356666677889999998865544444344445778999998777666532 124677777765 3333333322
Q ss_pred cCceeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 001184 587 RKKSAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGL 665 (1130)
Q Consensus 587 ~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 665 (1130)
.-.....++++++++.|+.+. ..+.|...|++........... ......+++..+ .+.++-...+.|...|..++.
T Consensus 169 ~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 169 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSCC
T ss_pred CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCCCc
Confidence 233567799999877776664 4678999998765443333211 113467777665 344444456778888876663
Q ss_pred hhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCcccee
Q 001184 666 RALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWE 745 (1130)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~ 745 (1130)
.. ..+..... ...++ ..+.|. +. | .+
T Consensus 246 ~~-~~i~~~~~----------~p~~i--~v~~~~--------~q-p----------------~~---------------- 271 (619)
T 3s94_A 246 GL-REIHSDIF----------SPMDI--HAFSQQ--------RQ-P----------------NA---------------- 271 (619)
T ss_dssp CC-EECCSCCC----------CCSEE--EECCGG--------GS-C----------------CC----------------
T ss_pred cc-EEEecCCC----------CCcEE--EEEccc--------cC-C----------------Cc----------------
Confidence 21 11111000 00000 011111 00 0 00
Q ss_pred eccccCCcceeEEEecCCCCCccceEEEEEe-ccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcce
Q 001184 746 LTEIVDPLQCRVVAMPESTDSASKVARLLYT-NSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLM 824 (1130)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 824 (1130)
...| ....+.+..+++. |......+....|.. +
T Consensus 272 ------~n~C--------~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~--------------------------------l 305 (619)
T 3s94_A 272 ------TNPC--------GIDNGGCSHLCLMSPVKPFYQCACPTGVK--------------------------------L 305 (619)
T ss_dssp ------CCTT--------TTTGGGCSSEEEECSSTTSEEEECCTTCC--------------------------------B
T ss_pred ------cccc--------cCCCCcccceEECCCCCCCceEeCCchhe--------------------------------e
Confidence 0000 0001111112221 111101111111110 0
Q ss_pred eccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEE-EEe-CCCCCeEEEEEeCCCCcEEEEEeCCCcEEEE
Q 001184 825 TNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMT-TFM-SPPPASTFLAFHPQDNNIIAIGMEDSTIQIY 902 (1130)
Q Consensus 825 ~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~-~~~-~~~~~i~~l~~sp~~~~~lasg~~dg~v~iw 902 (1130)
. ....+|. .....+|+.+..+.|+..++....... .+. ..-..+.+++|.+.++.++.+-...+.|+.+
T Consensus 306 ~-------~d~~~C~--~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~ 376 (619)
T 3s94_A 306 L-------ENGKTCK--DGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRS 376 (619)
T ss_dssp C-------TTSSCBC--SSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred c-------ccCcccC--CCCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEE
Confidence 0 0001111 112346666667788888887653221 121 1234578899998555555555567889988
Q ss_pred EeecCeEEEEEecCCCCeeEEEEccCCCeEE-EEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEE
Q 001184 903 NVRVDEVKTKLKGHQKHITGLAFSTNLNILV-SSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLL 981 (1130)
Q Consensus 903 d~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~-s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 981 (1130)
++........+........+|++...+..|. +-+..+.|.+.+++.... .. +. .. .-.....+++.|...+|.
T Consensus 377 ~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~-~~--l~--~~-~l~~P~~iavdp~~G~ly 450 (619)
T 3s94_A 377 FIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMR-KI--LI--SE-DLEEPRAIVLDPMVGYMY 450 (619)
T ss_dssp ETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE--EE--CT-TCCSEEEEEEETTTTEEE
T ss_pred EcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeE-EE--EE--EC-CCCCeeeEEEEcCCCcEE
Confidence 8875443333443445678999987555554 445578899999876422 11 11 11 125678999999755555
Q ss_pred EEc---CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeC-CCcEEEEeCCCcccccccCCCcccccCC
Q 001184 982 VNH---ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFT-DGSIGVFDADSLRLRCRIAPSAYMSQAS 1057 (1130)
Q Consensus 982 ~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 1057 (1130)
.++ ...|...+++. .....+.... -...+.++++++++.|+.+.. .+.|...++........+....
T Consensus 451 ~tD~g~~~~I~r~~~dG-~~~~~l~~~~--l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l------ 521 (619)
T 3s94_A 451 WTDWGEIPKIERAALDG-SDRVVLVNTS--LGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKI------ 521 (619)
T ss_dssp EEECSSSCEEEEEETTS-CSCEEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCC------
T ss_pred EecCCCCCEEEEEccCC-CccEEEEeCC--CCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCC------
Confidence 533 35676666653 3222232211 346789999997777776654 4789999987544322211111
Q ss_pred CCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q 001184 1058 PNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1096 (1130)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~ 1096 (1130)
.+ ...+++ . ++.++++-...+.|..-+..++.
T Consensus 522 --~~-P~glav--~--~~~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 522 --PH-IFGFTL--L--GDYVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp --CS-SCCEEE--E--TTEEEEECTTSSCEEEEESSSCC
T ss_pred --CC-cEEEEE--E--CCEEEEeecCCCeEEEEEcCCCc
Confidence 11 112223 2 23444444446667777766663
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.04 E-value=6.7e-08 Score=105.83 Aligned_cols=237 Identities=12% Similarity=0.069 Sum_probs=152.4
Q ss_pred ccCCeEEEeee-CCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-C-
Q 001184 777 NSGIGILALWS-NGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-G- 853 (1130)
Q Consensus 777 ~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-d- 853 (1130)
.+++++++.+. ++.|.++|+.+....+.-..... ..++.. ......-..+..+||| +++++. +
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie---------~~~~~~----~~g~s~Ph~~~~~pdG-i~Vs~~g~~ 158 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIE---------PEEVKK----VSGYSRLHTVHCGPDA-IYISALGNE 158 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEEC---------HHHHHH----HHCEEEEEEEEECSSC-EEEEEEEET
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeec---------hhhccc----ccCCCcccceeECCCe-EEEEcCCCc
Confidence 77888887665 78899998764332221111000 000000 0011234567888999 555543 3
Q ss_pred -----CeEEEEECCCceeEEEEeCCCC---CeEEEEEeCCCCcEEEEEe-------------------CCCcEEEEEeec
Q 001184 854 -----GKVSLFNMMNFKVMTTFMSPPP---ASTFLAFHPQDNNIIAIGM-------------------EDSTIQIYNVRV 906 (1130)
Q Consensus 854 -----g~i~iwd~~~~~~~~~~~~~~~---~i~~l~~sp~~~~~lasg~-------------------~dg~v~iwd~~~ 906 (1130)
|.|.++|..+++.+.++..... --..+.|+| +++.+++.. .+.+|.+||+.+
T Consensus 159 ~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~ 237 (462)
T 2ece_A 159 EGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK 237 (462)
T ss_dssp TSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT
T ss_pred CCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC
Confidence 6899999999999999873222 234578899 777777774 368999999999
Q ss_pred CeEEEEEecC-C-CCeeEEEE--ccCCCeEEEEeC------CCcEEEEECCCCcccceeeEeccCCC----C--------
Q 001184 907 DEVKTKLKGH-Q-KHITGLAF--STNLNILVSSGS------DAQLIFWNTDTWEKRKSIAIQLPAGK----L-------- 964 (1130)
Q Consensus 907 ~~~~~~l~~h-~-~~V~~l~~--s~dg~~L~s~s~------Dg~i~vwd~~~~~~~~~~~~~~~~~~----~-------- 964 (1130)
++.+.++..- . .....+.| +|+++++.+++. +++|.+|..+.++......+...... .
T Consensus 238 ~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~ 317 (462)
T 2ece_A 238 RKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFK 317 (462)
T ss_dssp TEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGT
T ss_pred CcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccc
Confidence 9888887653 1 23345555 999999888774 56888877665432222222111110 0
Q ss_pred --CCCeEEEEEcCCCcEEEEEc--CCcEEEEECC---CceeeeeeecCCC-----------CCCCeEEEEECCCCCEEEE
Q 001184 965 --PVGETRVQFHSDQVRLLVNH--ETQLAIYDGS---KMECIRQWVPQDV-----------LSSPISSAAYSCNSQLIYA 1026 (1130)
Q Consensus 965 --~~~v~~~~~s~d~~~l~~~~--d~~i~v~d~~---~~~~~~~~~~~~~-----------~~~~v~~v~~s~dg~~l~t 1026 (1130)
......+.+|+||++|.++. .+.|.+||+. +.+.+..+..... ....-..+++||||++|++
T Consensus 318 ~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyV 397 (462)
T 2ece_A 318 AVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYV 397 (462)
T ss_dssp EECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEE
T ss_pred cCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEE
Confidence 24578899999999999964 6789999986 3455555544310 0113578999999999998
Q ss_pred Ee
Q 001184 1027 TF 1028 (1130)
Q Consensus 1027 ~~ 1028 (1130)
+.
T Consensus 398 aN 399 (462)
T 2ece_A 398 TN 399 (462)
T ss_dssp EC
T ss_pred Ec
Confidence 87
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.1e-08 Score=110.66 Aligned_cols=301 Identities=12% Similarity=0.077 Sum_probs=180.6
Q ss_pred EEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeec
Q 001184 459 DLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD 538 (1130)
Q Consensus 459 ~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 538 (1130)
++.+..++. +..++.++.|..||.+++.+..+..+...+.++... .++ .++.++.+ +..+|. +++....+.
T Consensus 24 ~~~~d~~g~---l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~--~~g-~l~v~t~~--l~~~d~-~g~~~~~~~ 94 (330)
T 3hxj_A 24 SPILAKNGT---IYLGSSNKNLYAINTDGSVKWFFKSGEIIECRPSIG--KDG-TIYFGSDK--VYAINP-DGTEKWRFD 94 (330)
T ss_dssp CCEECTTSC---EECSSTTTTTEEECTTSCEEESSCGGGEEEECCEET--TTT-EECCSSCE--EEEECC-CGGGGGGSC
T ss_pred CceEccCCe---EEEEcCCCEEEEECCCCcEEEEEecCCCcccceEEe--cCC-cEEEecCc--EEEECC-CCcEEEEEE
Confidence 344545665 677778888999997777766555444444555542 343 45555554 777775 444443333
Q ss_pred CCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001184 539 APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMD 618 (1130)
Q Consensus 539 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 618 (1130)
..........+. +..+.+++. ++.|+.+|.. ++....+..... .+.++...+++. ++.++.++.|..+|..
T Consensus 95 ~~~~~~~~~~~~--~~~l~v~t~----~~~l~~~d~~-g~~~~~~~~~~~-~~~~~~~~~~g~-l~vgt~~~~l~~~d~~ 165 (330)
T 3hxj_A 95 TKKAIVSDFTIF--EDILYVTSM----DGHLYAINTD-GTEKWRFKTKKA-IYATPIVSEDGT-IYVGSNDNYLYAINPD 165 (330)
T ss_dssp C-----CCEEEE--TTEEEEECT----TSEEEEECTT-SCEEEEEECSSC-CCSCCEECTTSC-EEEECTTSEEEEECTT
T ss_pred CCCCcccCceEE--CCEEEEEec----CCEEEEEcCC-CCEEEEEcCCCc-eeeeeEEcCCCE-EEEEcCCCEEEEECCC
Confidence 333222233333 444555543 7789999988 777666654332 455566666665 6667888999999998
Q ss_pred CCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeecccc
Q 001184 619 NVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITP 698 (1130)
Q Consensus 619 ~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 698 (1130)
++.+........ .+.++...+++.+.+ ++ +.|..++ .++..
T Consensus 166 -g~~~~~~~~~~~--~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~-------------------------------- 206 (330)
T 3hxj_A 166 -GTEKWRFKTNDA--ITSAASIGKDGTIYF-GS--DKVYAIN-PDGTE-------------------------------- 206 (330)
T ss_dssp -SCEEEEEECSSC--CCSCCEECTTCCEEE-ES--SSEEEEC-TTSCE--------------------------------
T ss_pred -CCEeEEEecCCC--ceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcE--------------------------------
Confidence 877766654433 566777777776444 44 6677776 33310
Q ss_pred ccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEecc
Q 001184 699 VLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNS 778 (1130)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 778 (1130)
+|...
T Consensus 207 --------------------------------------------~~~~~------------------------------- 211 (330)
T 3hxj_A 207 --------------------------------------------KWNFY------------------------------- 211 (330)
T ss_dssp --------------------------------------------EEEEC-------------------------------
T ss_pred --------------------------------------------EEEEc-------------------------------
Confidence 01000
Q ss_pred CCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEE
Q 001184 779 GIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSL 858 (1130)
Q Consensus 779 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~i 858 (1130)
.....+.++++.++|.+.+...++.|..
T Consensus 212 ----------------------------------------------------~~~~~~~~~~~~~~g~l~v~t~~~gl~~ 239 (330)
T 3hxj_A 212 ----------------------------------------------------AGYWTVTRPAISEDGTIYVTSLDGHLYA 239 (330)
T ss_dssp ----------------------------------------------------CSSCCCSCCEECTTSCEEEEETTTEEEE
T ss_pred ----------------------------------------------------cCCcceeceEECCCCeEEEEcCCCeEEE
Confidence 0012234455566666555545677777
Q ss_pred EECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCC
Q 001184 859 FNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSD 938 (1130)
Q Consensus 859 wd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D 938 (1130)
+|. +++.+..+......+..+.+.+ ++ .|.+++.+|.|..+|. +++.+..+......+.++...++|+ |..++.+
T Consensus 240 ~~~-~g~~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~ 314 (330)
T 3hxj_A 240 INP-DGTEKWRFKTGKRIESSPVIGN-TD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRN 314 (330)
T ss_dssp ECT-TSCEEEEEECSSCCCSCCEECT-TS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTT
T ss_pred ECC-CCCEeEEeeCCCCccccceEcC-CC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCC
Confidence 764 4455555554444444556655 45 4556888888999995 6777777766666778888877775 5568889
Q ss_pred CcEEEEECCC
Q 001184 939 AQLIFWNTDT 948 (1130)
Q Consensus 939 g~i~vwd~~~ 948 (1130)
|.+++...+.
T Consensus 315 G~~~~~~~~~ 324 (330)
T 3hxj_A 315 GKFYALFNLE 324 (330)
T ss_dssp SCEEEEEC--
T ss_pred CeEEEEeccc
Confidence 9998877665
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=0.00019 Score=85.08 Aligned_cols=511 Identities=10% Similarity=0.012 Sum_probs=259.2
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
.-..+..++|++.+..+..+-..++.|..++++...... +..........+++.+.+..|.
T Consensus 35 ~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~-------------------v~~~g~~~P~GlAvD~~~~~LY 95 (628)
T 4a0p_A 35 GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH-------------------VVEFGLDYPEGMAVDWLGKNLY 95 (628)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------------------EECSSCSCCCEEEEETTTTEEE
T ss_pred CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE-------------------EEeCCCCCcceEEEEeCCCEEE
Confidence 345789999999877777777778899999987643321 1222223567899988766554
Q ss_pred E-EeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEE-cCCCcEEEEecCCCeeeEecCCCcCEEEE
Q 001184 426 V-AFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTC-GDDKLIRVWDLSGRKLFQFEGHEAPVYSV 503 (1130)
Q Consensus 426 s-~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~-s~d~~v~iwd~~~~~~~~~~~h~~~v~~~ 503 (1130)
. -...+.|.+.++.+... .. .+...-....+|++.|.... ++++- +..+.|...+.+|.....+...-.....+
T Consensus 96 ~tD~~~~~I~v~~~dG~~~-~~--l~~~~l~~P~~iavdp~~G~-lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~Gl 171 (628)
T 4a0p_A 96 WADTGTNRIEVSKLDGQHR-QV--LVWKDLDSPRALALDPAEGF-MYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGL 171 (628)
T ss_dssp EEETTTTEEEEEETTSTTC-EE--EECSSCCCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEE
T ss_pred EEECCCCEEEEEecCCCcE-EE--EEeCCCCCcccEEEccCCCe-EEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceE
Confidence 4 45567899999876532 11 12233445789999986664 33333 33567777777777666555455667888
Q ss_pred eecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEE
Q 001184 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1130)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1130)
++.+.. +.+.++-...+.|...|++...... +.........+++.. ..++.+-. ..+.|...|..+++....+
T Consensus 172 alD~~~-~~LY~aD~~~~~I~~~d~dG~~~~v-~~~~l~~P~glav~~--~~ly~tD~---~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 172 TIDYAK-RRLYWTDLDTNLIESSNMLGLNREV-IADDLPHPFGLTQYQ--DYIYWTDW---SRRSIERANKTSGQNRTII 244 (628)
T ss_dssp EEETTT-TEEEEEETTTTEEEEEETTSCSCEE-EEECCSCEEEEEEET--TEEEEEET---TTTEEEEEETTTCCSCEEE
T ss_pred EEcccc-CEEEEEECCCCEEEEEcCCCCceEE-eeccCCCceEEEEEC--CEEEEecC---CCCEEEEEECCCCCceEEE
Confidence 886533 3444555667889999987654432 222233455777764 34444432 2678888887777666555
Q ss_pred ecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEE-cCCCCEEEEEeCCCcEEEEEcC
Q 001184 584 IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRF-NKEGNLLVVTTADQGIKILANA 662 (1130)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~-s~~~~~l~~~~~dg~i~iw~~~ 662 (1130)
......+.....+++..+. +.+.. ...++ ....++. .|.+.+ .+.+..|...-.|
T Consensus 245 ~~~~~~p~~i~v~~~~~q~----~~n~C----~~~ng-------------~C~~~C~~~~~~~~-~C~C~~g~~l~~d-- 300 (628)
T 4a0p_A 245 QGHLDYVMDILVFHSSRQS----GWNEC----ASSNG-------------HCSHLCLAVPVGGF-VCGCPAHYSLNAD-- 300 (628)
T ss_dssp ECSCCSCCEEEEECGGGSC----CCCTT----TTTGG-------------GCSSEEEEETTTEE-EEECSTTCEECTT--
T ss_pred ecCCCCcceeeeeeecccc----cceEe----ccCCC-------------CcchhhhcCCCCCe-eEEcCCCcEeccc--
Confidence 4332212222223322110 00000 00000 0011111 111111 1111222110000
Q ss_pred CCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCcc
Q 001184 663 DGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTK 742 (1130)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 742 (1130)
+..+.. +. ..++.+. ...++
T Consensus 301 -~~~C~~----------------------------~~------------------------------~~Ll~s~-~~~i~ 320 (628)
T 4a0p_A 301 -NRTCSA----------------------------PT------------------------------TFLLFSQ-KSAIN 320 (628)
T ss_dssp -SSCEEC----------------------------CS------------------------------SEEEEEE-TTEEE
T ss_pred -CCcCcc----------------------------cc------------------------------ceeeeec-cceEE
Confidence 000000 00 0000000 00000
Q ss_pred ceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeee-CCeEEeeecCCCCCCCCcccccccccccccCCCC
Q 001184 743 PWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWS-NGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNG 821 (1130)
Q Consensus 743 ~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~ 821 (1130)
...+.... .....++. .....+.+++|.+....|+.+.. .+.|..+++..... .
T Consensus 321 ~i~l~~~~----~~~~~l~~--~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~-------------------~ 375 (628)
T 4a0p_A 321 RMVIDEQQ----SPDIILPI--HSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQG-------------------F 375 (628)
T ss_dssp EECCCTTC----CCCEECCC--TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------------------E
T ss_pred EEeccccc----CceEEEEe--hhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCc-------------------e
Confidence 00000000 00000110 12244678888887776666543 56666554321100 0
Q ss_pred cceeccCC-CCCCCceeEEEEecCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCC-
Q 001184 822 LLMTNDVP-ENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS- 897 (1130)
Q Consensus 822 ~~~~~~~~-~~~~~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg- 897 (1130)
..+..... ......+..+++...++.|..+. .+.|.+.++........+.........+++.|..+.++.+-....
T Consensus 376 ~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~ 455 (628)
T 4a0p_A 376 TVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERS 455 (628)
T ss_dssp EEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTE
T ss_pred EEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCCCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCC
Confidence 00000000 01234678999999888776555 578999998654332333344567899999995555554433222
Q ss_pred -cEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeC-CCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcC
Q 001184 898 -TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGS-DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHS 975 (1130)
Q Consensus 898 -~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 975 (1130)
.|...+++...........-...+.|++.++++.|..+.. .+.|...+++.... ... ..... .....+++..
T Consensus 456 ~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r-~~~--~~~~~---~~P~glav~~ 529 (628)
T 4a0p_A 456 PKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANR-IVL--EDSNI---LQPVGLTVFE 529 (628)
T ss_dssp EEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE--ECSSC---SCEEEEEEET
T ss_pred CeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCce-EEE--EcCCC---CCcEEEEEEC
Confidence 4555555433222223333445789999998888877765 57888999865332 111 11111 2345566554
Q ss_pred CCcEEEE-EcCCcEEEEECCCceeeeee
Q 001184 976 DQVRLLV-NHETQLAIYDGSKMECIRQW 1002 (1130)
Q Consensus 976 d~~~l~~-~~d~~i~v~d~~~~~~~~~~ 1002 (1130)
+.+..+ ...+.|...|..+|+....+
T Consensus 530 -~~ly~tD~~~~~i~~~~k~~G~~~~~i 556 (628)
T 4a0p_A 530 -NWLYWIDKQQQMIEKIDMTGREGRTKV 556 (628)
T ss_dssp -TEEEEEETTTTEEEEEETTSSSCCEEE
T ss_pred -CEEEEEECCCCeEEEEECcCCCCcEEE
Confidence 333333 34566777777766654444
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.3e-07 Score=106.43 Aligned_cols=285 Identities=11% Similarity=0.022 Sum_probs=169.1
Q ss_pred CCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEE
Q 001184 779 GIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSL 858 (1130)
Q Consensus 779 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~i 858 (1130)
+..+++++.++.+..+|..+++ .+|....+.... ........+.+.....++..++...++.|..
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~-------------~~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a 117 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGK-------------EIWSVSLAEKDG--WFSKEPALLSGGVTVSGGHVYIGSEKAQVYA 117 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCC-------------EEEEEECCC-----CCSCCCCCEEEEEEEETTEEEEEETTSEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCc-------------eeeeecCccccc--cccccCcccccCceEeCCEEEEEcCCCEEEE
Confidence 5667777778888777654322 123221110000 0000022233332333444444444899999
Q ss_pred EECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCe-----eEEEEccCCCeEE
Q 001184 859 FNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHI-----TGLAFSTNLNILV 933 (1130)
Q Consensus 859 wd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V-----~~l~~s~dg~~L~ 933 (1130)
+|..+++.+................ ++ .+++++.++.|+.+|..+++.+.......... ...... +..++
T Consensus 118 ~d~~tG~~~W~~~~~~~~~~~p~~~--~~-~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~ 192 (376)
T 3q7m_A 118 LNTSDGTVAWQTKVAGEALSRPVVS--DG-LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAV 192 (376)
T ss_dssp EETTTCCEEEEEECSSCCCSCCEEE--TT-EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEE
T ss_pred EECCCCCEEEEEeCCCceEcCCEEE--CC-EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEE
Confidence 9999999887776543322223333 33 67778899999999999999887765432211 122222 45777
Q ss_pred EEeCCCcEEEEECCCCcccceeeEeccCCCCC-CC---eEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCC
Q 001184 934 SSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLP-VG---ETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLS 1009 (1130)
Q Consensus 934 s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~---v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 1009 (1130)
.++.++.|..+|..+++..-......+..... .. +.......++..++.+.++.+..+|..+|+.+......
T Consensus 193 ~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~---- 268 (376)
T 3q7m_A 193 VGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG---- 268 (376)
T ss_dssp ECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC----
T ss_pred EEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC----
Confidence 88889999999999877643332221111000 00 00001112455555567899999999999987665432
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEE
Q 001184 1010 SPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKV 1089 (1130)
Q Consensus 1010 ~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~v 1089 (1130)
....+.. ++..|++++.++.|..+|..+|+.+-....... .......+. +..|++++.+|.|..
T Consensus 269 -~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~--------~~~~~~~~~-----~~~l~v~~~~g~l~~ 332 (376)
T 3q7m_A 269 -SVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH--------RLLTSPVLY-----NGNLVVGDSEGYLHW 332 (376)
T ss_dssp -CEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTT--------SCCCCCEEE-----TTEEEEECTTSEEEE
T ss_pred -CCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCC--------CcccCCEEE-----CCEEEEEeCCCeEEE
Confidence 3344443 466788888899999999999997755441110 111111121 457888999999999
Q ss_pred EeCCCCccCCcccc
Q 001184 1090 IEPSETERKWGVAV 1103 (1130)
Q Consensus 1090 W~~~~~~~~w~~~~ 1103 (1130)
+|..+++..|....
T Consensus 333 ~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 333 INVEDGRFVAQQKV 346 (376)
T ss_dssp EETTTCCEEEEEEC
T ss_pred EECCCCcEEEEEec
Confidence 99999999997654
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.97 E-value=5e-08 Score=106.86 Aligned_cols=234 Identities=15% Similarity=0.129 Sum_probs=150.4
Q ss_pred EEe--cCCCeEEEEEeCcCeEEEEeCCCC----ceeecccceeeeccccccceeeeeecC-CCccEEEEEEcCCCCEEEE
Q 001184 354 DFH--PFHHTLLVVGCGDGEITLWDVGLR----ERLVSKPFKIWDMSNCSMMLQAAIVKD-SSISVSRVAWSPDGNFIGV 426 (1130)
Q Consensus 354 ~fs--pdg~~llasg~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~v~~spdg~~las 426 (1130)
+++ +++++++++|..++.|.|+|+.+. +..+. .+ +..+... ....-..+..+||| .+++
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~-----ie--------~~~~~~~~g~s~Ph~~~~~pdG-i~Vs 153 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKV-----IE--------PEEVKKVSGYSRLHTVHCGPDA-IYIS 153 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEE-----EC--------HHHHHHHHCEEEEEEEEECSSC-EEEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeee-----ec--------hhhcccccCCCcccceeECCCe-EEEE
Confidence 347 899998888989999999999754 22211 00 0000101 11245567889999 6666
Q ss_pred EeCC------CeEEEEEecCCccceeeeeeecCC-CCeeEEEEecCCCceEEEEEc-------------------CCCcE
Q 001184 427 AFTK------HLIHLYTYQGSNDLCQSLEIDAHV-GGVNDLAFSYPNKQLCIVTCG-------------------DDKLI 480 (1130)
Q Consensus 427 ~~~d------~~i~vwd~~~~~~~~~~~~~~~h~-~~V~~i~~s~d~~~l~l~s~s-------------------~d~~v 480 (1130)
+..+ +.|.+.|.++.+.+.... ..+.. ..-..+.|+|+++ .+++.. .+.+|
T Consensus 154 ~~g~~~g~~~g~v~vlD~~T~~v~~~~~-~~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V 230 (462)
T 2ece_A 154 ALGNEEGEGPGGILMLDHYSFEPLGKWE-IDRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRI 230 (462)
T ss_dssp EEEETTSCSCCEEEEECTTTCCEEEECC-SBCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEE
T ss_pred cCCCcCCCCCCeEEEEECCCCeEEEEEc-cCCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCEE
Confidence 6544 789999999988665332 12222 2345688999999 677774 47899
Q ss_pred EEEe-cCCCeeeEecCC--CcCEEEEeecccCCccEEEEEe------cCCcEEEEEccCCccee--e--ecCC-------
Q 001184 481 RVWD-LSGRKLFQFEGH--EAPVYSVCPHQKENIHFIFSTA------VDGKIKAWLYDNVGSRV--D--YDAP------- 540 (1130)
Q Consensus 481 ~iwd-~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~s------~dg~i~vwd~~~~~~~~--~--~~~~------- 540 (1130)
.+|| .+++.+.++.-- ......+.|..++++++++.++ .+++|.+|..+.+.-.. . +...
T Consensus 231 ~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp 310 (462)
T 2ece_A 231 HFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLP 310 (462)
T ss_dssp EEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCC
T ss_pred EEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccc
Confidence 9999 667667776542 2344566665567777777776 46688877665421100 0 1110
Q ss_pred ---------CccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC---CceeEEEecccC---------c----eeEEEE
Q 001184 541 ---------GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE---GALKRTYIGFRK---------K----SAGVVQ 595 (1130)
Q Consensus 541 ---------~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~---~~~~~~~~~~~~---------~----~v~~~~ 595 (1130)
......+.+++||++|.++.. +.+.|.++|+.. .+.+..+..... . .-..+.
T Consensus 311 ~~~~~f~~~~~~pa~I~lS~DGrfLYVSnr---g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~ 387 (462)
T 2ece_A 311 EILKPFKAVPPLVTDIDISLDDKFLYLSLW---GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLE 387 (462)
T ss_dssp GGGGGGTEECCCCCCEEECTTSCEEEEEET---TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEE
T ss_pred ccccccccCCCceeEEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEE
Confidence 234678999999999998864 468999999853 344444432200 0 245688
Q ss_pred EcCCCCEEEEEe
Q 001184 596 FDTTRNRILAAG 607 (1130)
Q Consensus 596 ~~~~~~~l~~~~ 607 (1130)
++|||++|+++.
T Consensus 388 lSpDGk~LyVaN 399 (462)
T 2ece_A 388 ISRDGRRVYVTN 399 (462)
T ss_dssp ECTTSSEEEEEC
T ss_pred EcCCCCEEEEEc
Confidence 999999999887
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.96 E-value=1.5e-07 Score=106.99 Aligned_cols=274 Identities=16% Similarity=0.121 Sum_probs=173.2
Q ss_pred cCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEE-c-CCCCEEEEEe------------------CCC
Q 001184 551 ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQF-D-TTRNRILAAG------------------EDN 610 (1130)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~~------------------~dg 610 (1130)
+||++++++.. .+..|.+.|+.+.++.+.+.-........+++ + |+++++++++ .++
T Consensus 99 ~DG~~lfVnd~---~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~ 175 (595)
T 1fwx_A 99 YDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN 175 (595)
T ss_dssp EEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred cCCCEEEEEcC---CCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence 38999988753 37789999999999888665433335667777 5 9999999985 345
Q ss_pred cEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhccccccccccccccccccc
Q 001184 611 QIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGS 690 (1130)
Q Consensus 611 ~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1130)
.+.+.|.++.+...++...+ ....++++|+|+++++.+.+..- + ..+.......
T Consensus 176 ~vtvID~~t~~v~~qI~Vgg---~pd~~~~spdGk~~~vt~~~se~-------~-~~i~~~~~~~--------------- 229 (595)
T 1fwx_A 176 VFTAVDADKWEVAWQVLVSG---NLDNCDADYEGKWAFSTSYNSEK-------G-MTLPEMTAAE--------------- 229 (595)
T ss_dssp EEEEEETTTTEEEEEEEESS---CCCCEEECSSSSEEEEEESCTTC-------C-SSHHHHTCCS---------------
T ss_pred eEEEEECCCCeEEEEEEeCC---CccceEECCCCCEEEEEecCccc-------C-cchhhccccc---------------
Confidence 79999999999988887654 24678899999999999876321 0 0000000000
Q ss_pred ceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccce
Q 001184 691 AVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKV 770 (1130)
Q Consensus 691 ~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i 770 (1130)
-..+.+.+....
T Consensus 230 -----------------------------------------------~d~v~V~~~~~~--------------------- 241 (595)
T 1fwx_A 230 -----------------------------------------------MDHIVVFNIAEI--------------------- 241 (595)
T ss_dssp -----------------------------------------------EEEEEEEEHHHH---------------------
T ss_pred -----------------------------------------------cceEEEeeccce---------------------
Confidence 000111111000
Q ss_pred EEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEE
Q 001184 771 ARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMS 850 (1130)
Q Consensus 771 ~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~ 850 (1130)
..+.++|+.... +.+.+.|..... +..+...++ -.....++.++|||+++++
T Consensus 242 --~~~v~~Gk~~~i----~~V~VID~~~~~--------------------~~~~~~~Ip--vg~~PhGv~~sPDGk~v~V 293 (595)
T 1fwx_A 242 --EKAIAAGDYQEL----NGVKVVDGRKEA--------------------SSLFTRYIP--IANNPHGCNMAPDKKHLCV 293 (595)
T ss_dssp --HHHHHHTCSEEE----TTEEEEECSGGG--------------------CCSSEEEEE--EESSCCCEEECTTSSEEEE
T ss_pred --eEeccCCCeeEE----CcEEEEeCcccC--------------------CceeEEEEe--cCCCceEEEEcCCCCEEEE
Confidence 001122332221 234444432210 111000010 1234567999999999999
Q ss_pred Ee--CCeEEEEECCCce------------eEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeec----------
Q 001184 851 AG--GGKVSLFNMMNFK------------VMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV---------- 906 (1130)
Q Consensus 851 ~~--dg~i~iwd~~~~~------------~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~---------- 906 (1130)
++ +++|.++|+.+.+ ...... -......++|+| +|...++...|++|.+||+++
T Consensus 294 ~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~ 371 (595)
T 1fwx_A 294 AGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKV 371 (595)
T ss_dssp ECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSC
T ss_pred eCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhccccc
Confidence 87 6889999999763 233333 345688999999 666666777899999999987
Q ss_pred CeEEEEEecCCCCe-----eEEEEccCCCeEEEEeC---CCc----------EEEEECCCCcc
Q 001184 907 DEVKTKLKGHQKHI-----TGLAFSTNLNILVSSGS---DAQ----------LIFWNTDTWEK 951 (1130)
Q Consensus 907 ~~~~~~l~~h~~~V-----~~l~~s~dg~~L~s~s~---Dg~----------i~vwd~~~~~~ 951 (1130)
.+.+.++..|-.+- .++.++|||++|+++.. |+. -.++|+..++.
T Consensus 372 ~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 372 DPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp CCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred ceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 67788887775432 22355899999999865 432 18899966553
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.96 E-value=1e-09 Score=122.66 Aligned_cols=190 Identities=7% Similarity=-0.028 Sum_probs=113.7
Q ss_pred CCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCc
Q 001184 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA 498 (1130)
Q Consensus 420 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~ 498 (1130)
++..|++++.|+.|+.||..+|+.+.. +.. +.+.+..+..++. ++++++.|+.|+.|| .+|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~---~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWT---LKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEE---EEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE---ecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 578899999999999999999986653 333 4565666667777 677888999999999 68888776654422
Q ss_pred CEEEEeecccC-CccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCC
Q 001184 499 PVYSVCPHQKE-NIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577 (1130)
Q Consensus 499 ~v~~~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1130)
... ...|.- .+..+++++.|+.++.||.++++....+..+. ...++|++..+++++. ++.|+.||..+|
T Consensus 81 ~~~--~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG 150 (369)
T 2hz6_A 81 ELV--QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTR 150 (369)
T ss_dssp HHH--TTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSS
T ss_pred ccc--ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCC
Confidence 111 001111 33578888999999999999988877665543 2345678888888876 789999999999
Q ss_pred ceeEEEecccCceeEEEEEcCCC---CEEEEEeCCCcEEEEeCCCCceeEEEecc
Q 001184 578 ALKRTYIGFRKKSAGVVQFDTTR---NRILAAGEDNQIKFWDMDNVNMLTSTEAE 629 (1130)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 629 (1130)
+.+..+.... .....+..+. ..+++++.||.|+.||..+|+.+......
T Consensus 151 ~~~W~~~~~~---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~ 202 (369)
T 2hz6_A 151 ELRWNATYFD---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA 202 (369)
T ss_dssp SCCCEEEEEE---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS
T ss_pred CEEEeEeccc---ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC
Confidence 8876654321 1223333332 56788899999999999999988777643
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.5e-08 Score=109.99 Aligned_cols=218 Identities=13% Similarity=0.105 Sum_probs=139.5
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEe
Q 001184 414 RVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQF 493 (1130)
Q Consensus 414 ~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~ 493 (1130)
+.....+|. |..++.++.|..|| .+++... ....+...+.++...++|. +..++.+ |..+|.+|+.+..+
T Consensus 24 ~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~---~~~~~~~~~~~~~~~~~g~---l~v~t~~--l~~~d~~g~~~~~~ 93 (330)
T 3hxj_A 24 SPILAKNGT-IYLGSSNKNLYAIN-TDGSVKW---FFKSGEIIECRPSIGKDGT---IYFGSDK--VYAINPDGTEKWRF 93 (330)
T ss_dssp CCEECTTSC-EECSSTTTTTEEEC-TTSCEEE---SSCGGGEEEECCEETTTTE---ECCSSCE--EEEECCCGGGGGGS
T ss_pred CceEccCCe-EEEEcCCCEEEEEC-CCCcEEE---EEecCCCcccceEEecCCc---EEEecCc--EEEECCCCcEEEEE
Confidence 344555664 55566788899999 7776443 2223344566777777775 4455544 88888777665554
Q ss_pred cCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEee
Q 001184 494 EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWN 573 (1130)
Q Consensus 494 ~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1130)
...........+. +..++.++.++.+..+|.+ +............+.++...+++..++ ++. ++.|..+|
T Consensus 94 ~~~~~~~~~~~~~----~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~v-gt~----~~~l~~~d 163 (330)
T 3hxj_A 94 DTKKAIVSDFTIF----EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYV-GSN----DNYLYAIN 163 (330)
T ss_dssp CC-----CCEEEE----TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEE-ECT----TSEEEEEC
T ss_pred ECCCCcccCceEE----CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEE-EcC----CCEEEEEC
Confidence 4333333333332 2467888889999999988 666655555555566677777887555 432 68899999
Q ss_pred CCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCC
Q 001184 574 ESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD 653 (1130)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~d 653 (1130)
.. ++....+..... .+..+.+.+++. ++.++ +.|..+| .+++......... ..+.++...++|. +.+++.+
T Consensus 164 ~~-g~~~~~~~~~~~-~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~--~~~~~~~~~~~g~-l~v~t~~ 234 (330)
T 3hxj_A 164 PD-GTEKWRFKTNDA-ITSAASIGKDGT-IYFGS--DKVYAIN-PDGTEKWNFYAGY--WTVTRPAISEDGT-IYVTSLD 234 (330)
T ss_dssp TT-SCEEEEEECSSC-CCSCCEECTTCC-EEEES--SSEEEEC-TTSCEEEEECCSS--CCCSCCEECTTSC-EEEEETT
T ss_pred CC-CCEeEEEecCCC-ceeeeEEcCCCE-EEEEe--CEEEEEC-CCCcEEEEEccCC--cceeceEECCCCe-EEEEcCC
Confidence 88 877766664332 566666767776 44444 8899999 7777766655433 3577888888775 4556667
Q ss_pred CcEEEEE
Q 001184 654 QGIKILA 660 (1130)
Q Consensus 654 g~i~iw~ 660 (1130)
+.+..++
T Consensus 235 ~gl~~~~ 241 (330)
T 3hxj_A 235 GHLYAIN 241 (330)
T ss_dssp TEEEEEC
T ss_pred CeEEEEC
Confidence 7777665
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.95 E-value=3.1e-08 Score=112.55 Aligned_cols=244 Identities=9% Similarity=0.023 Sum_probs=163.7
Q ss_pred cCCCEEEEEe--CCeEEEEECCCceeEEEEeCC-CCCeEEEEE-e-CCCCcEEEEEe------------------CCCcE
Q 001184 843 KNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSP-PPASTFLAF-H-PQDNNIIAIGM------------------EDSTI 899 (1130)
Q Consensus 843 ~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~-s-p~~~~~lasg~------------------~dg~v 899 (1130)
+||+++.+.. ++.|.+.|+.+.++...+... ......+++ + | ++.++++++ .++.+
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceE
Confidence 3999998877 577999999999998866543 345888888 5 8 777777774 34579
Q ss_pred EEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCC--------------------------------------cE
Q 001184 900 QIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDA--------------------------------------QL 941 (1130)
Q Consensus 900 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg--------------------------------------~i 941 (1130)
.+.|.++.+.+.++.--. .-..++++|||+++++.+.+. .|
T Consensus 178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 999999999888876322 356788999999999988653 35
Q ss_pred EEEECCC--CcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE--cCCcEEEEECCCce------------eeeeeecC
Q 001184 942 IFWNTDT--WEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN--HETQLAIYDGSKME------------CIRQWVPQ 1005 (1130)
Q Consensus 942 ~vwd~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~--~d~~i~v~d~~~~~------------~~~~~~~~ 1005 (1130)
.|.|..+ +... ...+... .....+.++|||++++++ .+.++.++|+.+.+ .+..+..
T Consensus 257 ~VID~~~~~~~~~-~~~Ipvg-----~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v- 329 (595)
T 1fwx_A 257 KVVDGRKEASSLF-TRYIPIA-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL- 329 (595)
T ss_dssp EEEECSGGGCCSS-EEEEEEE-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-
T ss_pred EEEeCcccCCcee-EEEEecC-----CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-
Confidence 5666655 2110 1111111 244568999999999985 47899999999663 2333332
Q ss_pred CCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC----------cccccccCCCcccccCCCCCceeeeEEEEEcCCCC
Q 001184 1006 DVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS----------LRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEP 1075 (1130)
Q Consensus 1006 ~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1075 (1130)
......++|+|||...++...|+.|.+||+++ .+.+.++..+.. + +|.-.......+| |+
T Consensus 330 ---G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yq-p-----Gh~~~~~g~t~~~-DG 399 (595)
T 1fwx_A 330 ---GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ-P-----GHLKTVMGETLDA-TN 399 (595)
T ss_dssp ---CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC-E-----EEEEETTTTSTTC-CS
T ss_pred ---CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccc-c-----ccceeccceEeCC-CC
Confidence 35678999999994334445799999999987 344444443321 1 1211111223345 68
Q ss_pred CEEEEEeC---CCc----------EEEEeCCCCccCCcccccC
Q 001184 1076 NQLAVGLT---DGS----------VKVIEPSETERKWGVAVPV 1105 (1130)
Q Consensus 1076 ~~l~s~~~---Dg~----------v~vW~~~~~~~~w~~~~p~ 1105 (1130)
++|+++.. |+. -.++|++.++.+-....|.
T Consensus 400 k~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~lv~d~p~ 442 (595)
T 1fwx_A 400 DWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHDGPT 442 (595)
T ss_dssp SEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEEEEEEE
T ss_pred CEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEEEEEEcC
Confidence 88888765 442 1789998877764444444
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.90 E-value=7.2e-10 Score=123.86 Aligned_cols=192 Identities=14% Similarity=0.134 Sum_probs=109.3
Q ss_pred CCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCC
Q 001184 886 DNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLP 965 (1130)
Q Consensus 886 ~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 965 (1130)
++..+++++.||.|+.||..+|+.+-++.. +.+.+..+..++..+++++.|+.|+.||..+++...............
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 456788999999999999999999988876 566666677788888888899999999998876543221111000000
Q ss_pred CCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCccccc
Q 001184 966 VGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRC 1045 (1130)
Q Consensus 966 ~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~ 1045 (1130)
.+ .+..++..++.+.++.++.||..+|+.+..+..+. ...++|++..+++++.|+.|+.||..+|+.+.
T Consensus 86 sp----~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-------~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W 154 (369)
T 2hz6_A 86 SP----CRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-------ADSLSPSTSLLYLGRTEYTITMYDTKTRELRW 154 (369)
T ss_dssp CS----CC-----CCCCEEEEEEEEECCC-----------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred Cc----eEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-------cccccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence 11 11234443334678899999999999987765541 24567788899999999999999999998775
Q ss_pred ccCCCcccccCCCCCceeeeEEEEEcCC--CCCEEEEEeCCCcEEEEeCCCCccCCcccc
Q 001184 1046 RIAPSAYMSQASPNSQTVFPLVVTSHPQ--EPNQLAVGLTDGSVKVIEPSETERKWGVAV 1103 (1130)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~Dg~v~vW~~~~~~~~w~~~~ 1103 (1130)
.+....+ .. ....++ -...+++++.||.|..||..+++..|....
T Consensus 155 ~~~~~~~-----------~~--~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 155 NATYFDY-----------AA--SLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp EEEEEEE-----------CC--BCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred eEecccc-----------cC--ccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 5532110 00 111110 014677888999999999999999997653
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.90 E-value=0.00081 Score=85.25 Aligned_cols=284 Identities=8% Similarity=0.031 Sum_probs=142.8
Q ss_pred EEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC----CCEEEE
Q 001184 351 VSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD----GNFIGV 426 (1130)
Q Consensus 351 ~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd----g~~las 426 (1130)
+|+++-.+| +|+.|+..|.=.+|.+.....-....+.+-+ .+ ..-++|..++.-.. ...|++
T Consensus 330 ssl~~l~~g--~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~-----------~~-~N~~PI~D~~v~d~~~~~~~~i~~ 395 (1158)
T 3ei3_A 330 ECLTYLDNG--VVFVGSRLGDSQLVKLNVDSNEQGSYVVAME-----------TF-TNLGPIVDMCVVDLERQGQGQLVT 395 (1158)
T ss_dssp SEEEECSTT--EEEEECSSSCEEEEEECSSCCTTSCCEEEEE-----------EE-CCCCSEEEEEEECTTSSSCCEEEE
T ss_pred cEEEEECCC--EEEEEEecCCcEEEEEecCCCCccceEEeEe-----------ee-cCcCCceeEEEEccCCCCCCeEEE
Confidence 444444455 5888888887777777643210000011100 11 22356776666431 224544
Q ss_pred Ee---CCCeEEEEEecCCccceeeeeeecCCCCeeEEEEec---CCCceEEEEEcCCCcEEEEecCCCeeeEec--CCCc
Q 001184 427 AF---TKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY---PNKQLCIVTCGDDKLIRVWDLSGRKLFQFE--GHEA 498 (1130)
Q Consensus 427 ~~---~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~---d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~--~h~~ 498 (1130)
++ .+|.+++..-.-+-.......+.+ -..++.+.... .+. +|+.+..+.+ +|+..++..+.... +...
T Consensus 396 ~sG~g~~gsL~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~--yLvlS~~~~T-~Vl~i~~e~veev~~~gf~~ 471 (1158)
T 3ei3_A 396 CSGAFKEGSLRIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDD--TLVLSFVGQT-RVLMLNGEEVEETELMGFVD 471 (1158)
T ss_dssp EECCGGGCEEEEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCC--EEEEEETTEE-EEEEEETTEEEEECCTTCCS
T ss_pred EECcCCCCeEEEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCC--EEEEECCCCe-EEEEEeCCcccccccccccC
Confidence 43 457788765432221111223332 24566665432 223 5565555555 55554444444432 1111
Q ss_pred CEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCC-ccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCC
Q 001184 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG-LWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577 (1130)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1130)
....++...-+++ .++=.. ...|++.+.+.......+.... ..|...+.+ +.+++.+. .+.+..+.+..+
T Consensus 472 ~~~TL~~~~l~~~-~ivQVt-~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-----g~~l~~fel~~~ 542 (1158)
T 3ei3_A 472 DQQTFFCGNVAHQ-QLIQIT-SASVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-----GRALYYLQIHPQ 542 (1158)
T ss_dssp SSCEEEEEEETTT-EEEEEE-SSCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-----TTEEEEEEEETT
T ss_pred CCCcEEEEEcCCC-eEEEEe-cCEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-----CCEEEEEEeeCC
Confidence 1111111111111 122111 2345666655444444444333 345555544 34565553 456777776655
Q ss_pred ceeEEEecccCceeEEEEEcCC------CCEEEEEeC-CCcEEEEeCCCCceeEEEeccCCCCCcceEEEc--CCCCEEE
Q 001184 578 ALKRTYIGFRKKSAGVVQFDTT------RNRILAAGE-DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN--KEGNLLV 648 (1130)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s--~~~~~l~ 648 (1130)
++.......-...+.|+++.+. +++++.|.. |++++|+++.+.+.+........ ....++.+. ....+|.
T Consensus 543 ~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~-~~p~si~l~~~~~~~~L~ 621 (1158)
T 3ei3_A 543 ELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE-IIPRSILMTTFESSHYLL 621 (1158)
T ss_dssp EEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS-CCEEEEEEEEETTEEEEE
T ss_pred ceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC-CCCcEEEEEEeCCCcEEE
Confidence 4332222222347889988763 368999996 99999999998777765554321 123333332 2345788
Q ss_pred EEeCCCcEEEEEcC
Q 001184 649 VTTADQGIKILANA 662 (1130)
Q Consensus 649 ~~~~dg~i~iw~~~ 662 (1130)
+|-.||.+.-+.++
T Consensus 622 igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 622 CALGDGALFYFGLN 635 (1158)
T ss_dssp EEETTSEEEEEEEC
T ss_pred EEeCCCeEEEEEEc
Confidence 88899988666543
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=7.3e-06 Score=86.80 Aligned_cols=223 Identities=11% Similarity=0.047 Sum_probs=143.3
Q ss_pred ccEEEEEEcCCCCEEEEE-eCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCC
Q 001184 410 ISVSRVAWSPDGNFIGVA-FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGR 488 (1130)
Q Consensus 410 ~~V~~v~~spdg~~las~-~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~ 488 (1130)
..+..++|++++..|..+ ..++.|.+++..++.... .+.........+++.+++.. ++++....+.|.+++.++.
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE---EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence 457899999976665554 456899999997654221 12222346889999998764 5566667789999996665
Q ss_pred eeeEecC-CCcCEEEEeecccCCccEEEEEec--CCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCC
Q 001184 489 KLFQFEG-HEAPVYSVCPHQKENIHFIFSTAV--DGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEG 565 (1130)
Q Consensus 489 ~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1130)
....+.. .......+++++.. +.+.++... .+.|..++++.................+++++++..|+.+.. .
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~~-g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~---~ 187 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA---G 187 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETTT-TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---T
T ss_pred CEEEEEECCCCCccEEEEeeCC-CEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---C
Confidence 4444332 22456788886532 233344333 468888887654333222233346789999999888877653 3
Q ss_pred CcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCC
Q 001184 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEG 644 (1130)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~ 644 (1130)
.+.|..+|.........+.+. . ....+++. ++.++.+. ..+.|.++|..+++.+..+.... ......+++.|++
T Consensus 188 ~~~I~~~~~~g~~~~~~~~~~-~-~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~~~ 262 (267)
T 1npe_A 188 THRAECLNPAQPGRRKVLEGL-Q-YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIALSQ 262 (267)
T ss_dssp TTEEEEEETTEEEEEEEEECC-C-SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEECSC
T ss_pred CCEEEEEecCCCceEEEecCC-C-CceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeecCcc
Confidence 678999998765444333322 2 23445554 45555555 56899999999999888876432 1235778888876
Q ss_pred C
Q 001184 645 N 645 (1130)
Q Consensus 645 ~ 645 (1130)
.
T Consensus 263 ~ 263 (267)
T 1npe_A 263 C 263 (267)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=6.4e-07 Score=92.41 Aligned_cols=203 Identities=13% Similarity=0.080 Sum_probs=142.0
Q ss_pred CceeEEEEecCCCEEEEEe---CCeEEEEECCCceeEEEEeCCCC-CeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeE
Q 001184 834 DVVPCVALSKNDSYVMSAG---GGKVSLFNMMNFKVMTTFMSPPP-ASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV 909 (1130)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~-~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 909 (1130)
.....++|++|+.+.++.+ ++.|+++|+.+++.+..+..... ....+++. ++++.++...++.+.++|..+.+.
T Consensus 21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp CCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE
T ss_pred CCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE
Confidence 3467899999876555544 47899999999999998764322 23345554 345666666789999999999999
Q ss_pred EEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-cCCcE
Q 001184 910 KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQL 988 (1130)
Q Consensus 910 ~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i 988 (1130)
+.++..-.. ....+++||++|+.+..++.|.++|..+.+.......... +..-.....+.|. +|...+.. .++.|
T Consensus 99 ~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~-~~p~~~~nele~~-dg~lyvn~~~~~~V 174 (266)
T 2iwa_A 99 IKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN-GHRVIRLNELEYI-NGEVWANIWQTDCI 174 (266)
T ss_dssp EEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET-TEECCCEEEEEEE-TTEEEEEETTSSEE
T ss_pred EEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC-CcccccceeEEEE-CCEEEEecCCCCeE
Confidence 998863311 1344667898888888889999999998776554443321 1111235577777 77554444 47899
Q ss_pred EEEECCCceeeeeeecCC----------CCCCCeEEEEECCCCCEEEEEe-CCCcEEEEeCCCcc
Q 001184 989 AIYDGSKMECIRQWVPQD----------VLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLR 1042 (1130)
Q Consensus 989 ~v~d~~~~~~~~~~~~~~----------~~~~~v~~v~~s~dg~~l~t~~-~Dg~i~vwd~~~~~ 1042 (1130)
.+.|..+++.+..+.... ....-.+.++|+|+++.|++++ ..+.+++-++....
T Consensus 175 ~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 175 ARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred EEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 999999999988876420 0013568999999987555544 67889988887654
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=1.6e-06 Score=104.67 Aligned_cols=192 Identities=12% Similarity=0.159 Sum_probs=129.2
Q ss_pred CCeEEEEECCCceeEEEEeCCC-------------------------------CCeEEEEEeCCCCcEEEEEeCCC----
Q 001184 853 GGKVSLFNMMNFKVMTTFMSPP-------------------------------PASTFLAFHPQDNNIIAIGMEDS---- 897 (1130)
Q Consensus 853 dg~i~iwd~~~~~~~~~~~~~~-------------------------------~~i~~l~~sp~~~~~lasg~~dg---- 897 (1130)
+|.|..+|..+++.+..+.... .....+++.| ...+++.++.++
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~ 255 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWN 255 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccc
Confidence 4678888888888877765311 0112468888 666788887776
Q ss_pred ---------------cEEEEEeecCeEEEEEec--CC-------CCeeEEEEccCCC---eEEEEeCCCcEEEEECCCCc
Q 001184 898 ---------------TIQIYNVRVDEVKTKLKG--HQ-------KHITGLAFSTNLN---ILVSSGSDAQLIFWNTDTWE 950 (1130)
Q Consensus 898 ---------------~v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~dg~---~L~s~s~Dg~i~vwd~~~~~ 950 (1130)
.|..+|..+|+.+-.++. |. .+.....+..+|+ .++.++.+|.++++|..+++
T Consensus 256 ~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 256 REVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 399999999999877764 32 2233333344775 68899999999999999988
Q ss_pred ccceeeEec---------cCC--------C-C------------CCCeEEEEEcCCCcEEEEE-----------------
Q 001184 951 KRKSIAIQL---------PAG--------K-L------------PVGETRVQFHSDQVRLLVN----------------- 983 (1130)
Q Consensus 951 ~~~~~~~~~---------~~~--------~-~------------~~~v~~~~~s~d~~~l~~~----------------- 983 (1130)
.+....... ..+ . . ...-..++++|+...+++.
T Consensus 336 ~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~ 415 (668)
T 1kv9_A 336 LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVT 415 (668)
T ss_dssp EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCC
T ss_pred EeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeecccccc
Confidence 652211100 000 0 0 0001126788877766541
Q ss_pred --------------------cCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCccc
Q 001184 984 --------------------HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRL 1043 (1130)
Q Consensus 984 --------------------~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~ 1043 (1130)
.++.|..||+.+|+.+...... .+.....+...+.++++++.||.+++||..+|+.
T Consensus 416 ~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~ 491 (668)
T 1kv9_A 416 RKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP----THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA 491 (668)
T ss_dssp CSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred ccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC----CCCcCceeEeCCCEEEEECCcccchhhhhhcChh
Confidence 1267999999999998776554 2333344555788899999999999999999999
Q ss_pred ccccCC
Q 001184 1044 RCRIAP 1049 (1130)
Q Consensus 1044 ~~~~~~ 1049 (1130)
+.++..
T Consensus 492 l~~~~~ 497 (668)
T 1kv9_A 492 LWQFEA 497 (668)
T ss_dssp EEEEEC
T ss_pred heEecC
Confidence 888764
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=6.2e-06 Score=99.49 Aligned_cols=136 Identities=13% Similarity=0.102 Sum_probs=86.2
Q ss_pred cEEEEEecCCcEEEEEccCCcceeeecCCCcc-----------EEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCcee
Q 001184 512 HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLW-----------CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK 580 (1130)
Q Consensus 512 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-----------v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1130)
..++.++.++.|..+|..+++.+..+...... ...+++ .+..+++++. ++.|+.+|..+|+.+
T Consensus 67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~----dg~l~alD~~tG~~~ 140 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTL----DGRLIALDAKTGKAI 140 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECT----TSEEEEEETTTCCEE
T ss_pred CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcC----CCEEEEEECCCCCEe
Confidence 46777778888888898888887766543221 011222 3456666653 889999999999998
Q ss_pred EEEecccCc---eeEE-EEEcCCCCEEEEEeC------CCcEEEEeCCCCceeEEEeccCCC------------------
Q 001184 581 RTYIGFRKK---SAGV-VQFDTTRNRILAAGE------DNQIKFWDMDNVNMLTSTEAEGGL------------------ 632 (1130)
Q Consensus 581 ~~~~~~~~~---~v~~-~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~------------------ 632 (1130)
..+...... .+.. ..+ .+..++++.. +|.|+.+|..+|+.+..+......
T Consensus 141 W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 218 (668)
T 1kv9_A 141 WSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ 218 (668)
T ss_dssp EEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred eeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCC
Confidence 877653110 1111 111 1345666543 589999999999998877542110
Q ss_pred -----------CCcceEEEcCCCCEEEEEeCCCc
Q 001184 633 -----------PSLPRLRFNKEGNLLVVTTADQG 655 (1130)
Q Consensus 633 -----------~~i~~v~~s~~~~~l~~~~~dg~ 655 (1130)
.....++++|+...++.++.++.
T Consensus 219 g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~ 252 (668)
T 1kv9_A 219 GDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGS 252 (668)
T ss_dssp SSCHHHHCEECCCCSCEEEETTTTEEEEECCCEE
T ss_pred ccceeeeCCCCccccceEEcCCCCEEEEeCCCCC
Confidence 01124678888788888877654
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.5e-06 Score=89.73 Aligned_cols=221 Identities=12% Similarity=0.044 Sum_probs=146.5
Q ss_pred ceeEEEEeCCC-CCeEEEEEeCCCCcEEEEEeC--CCcEEEEEeecCeEEEEEecCCC-CeeEEEEccCCCeEEEEe-CC
Q 001184 864 FKVMTTFMSPP-PASTFLAFHPQDNNIIAIGME--DSTIQIYNVRVDEVKTKLKGHQK-HITGLAFSTNLNILVSSG-SD 938 (1130)
Q Consensus 864 ~~~~~~~~~~~-~~i~~l~~sp~~~~~lasg~~--dg~v~iwd~~~~~~~~~l~~h~~-~V~~l~~s~dg~~L~s~s-~D 938 (1130)
.+.+.++.... .....++|++ ++.+.++.+. ++.|+++|+.+++.+..+.-... ....+++. ++.|..+. .+
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred ceEEEEEECCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 34556665322 2368999999 5665555443 57999999999999988753221 22345554 55665554 57
Q ss_pred CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-cCCcEEEEECCCceeeeeeecCCC--CCCCeEEE
Q 001184 939 AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKMECIRQWVPQDV--LSSPISSA 1015 (1130)
Q Consensus 939 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~--~~~~v~~v 1015 (1130)
+.+.++|..+.+........ .. . .+.+++||+.++++ .++.+.++|..+.+.+..+..... .-..++.+
T Consensus 86 ~~v~viD~~t~~v~~~i~~g---~~--~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nel 157 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQ---MK--D---GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNEL 157 (266)
T ss_dssp SEEEEEETTTTEEEEEEECC---SS--S---CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred CEEEEEECCCCcEEEEEECC---CC--C---eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeE
Confidence 89999999987665443221 11 1 13366687777764 477899999999998888765421 01246788
Q ss_pred EECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCccccc--CCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 001184 1016 AYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQ--ASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1093 (1130)
Q Consensus 1016 ~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~ 1093 (1130)
.|. +|++.+....++.|.+-|..+++.+..+......+. ............++|+|+...+++++.....|.+-++.
T Consensus 158 e~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 158 EYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp EEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred EEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 888 776555554678999999999999888875321110 00011123456789999767788888889999999987
Q ss_pred CCc
Q 001184 1094 ETE 1096 (1130)
Q Consensus 1094 ~~~ 1096 (1130)
..+
T Consensus 237 ~~~ 239 (266)
T 2iwa_A 237 LVR 239 (266)
T ss_dssp ECC
T ss_pred ccc
Confidence 654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.69 E-value=1.6e-06 Score=88.09 Aligned_cols=187 Identities=11% Similarity=0.104 Sum_probs=131.2
Q ss_pred CCceeEEEEecCCCEEEEEe-CC--eEEEEECCCceeEEEEeCCCCCeE--EEEEeCCCCcEEEEEeCCCcEEEEEeecC
Q 001184 833 EDVVPCVALSKNDSYVMSAG-GG--KVSLFNMMNFKVMTTFMSPPPAST--FLAFHPQDNNIIAIGMEDSTIQIYNVRVD 907 (1130)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~--~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 907 (1130)
......+.|+ ++.+..+.+ +| .|+++|+.+++.+..+.... ... .+++. ++++.+....++.+.+||.++.
T Consensus 42 ~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~ 117 (262)
T 3nol_A 42 KAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNL 117 (262)
T ss_dssp TCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTC
T ss_pred CcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEEECccC
Confidence 4456789998 666555555 55 79999999999999887543 333 34443 4455555566899999999999
Q ss_pred eEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-cCC
Q 001184 908 EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HET 986 (1130)
Q Consensus 908 ~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~ 986 (1130)
+.+.++.... ....+++|++.|+.+..++.|.++|..+.+.......... +..-..+..+.+. +|+..+.. .++
T Consensus 118 ~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~-g~~~~~lNELe~~-~G~lyan~w~~~ 192 (262)
T 3nol_A 118 RQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAH-GEELPELNELEWV-DGEIFANVWQTN 192 (262)
T ss_dssp CEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEET-TEECCCEEEEEEE-TTEEEEEETTSS
T ss_pred cEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccC-CccccccceeEEE-CCEEEEEEccCC
Confidence 9999987533 2234456888888877788899999998776555443321 1111234456666 67655554 578
Q ss_pred cEEEEECCCceeeeeeecCC---------CCCCCeEEEEECCCCCEEEEEe
Q 001184 987 QLAIYDGSKMECIRQWVPQD---------VLSSPISSAAYSCNSQLIYATF 1028 (1130)
Q Consensus 987 ~i~v~d~~~~~~~~~~~~~~---------~~~~~v~~v~~s~dg~~l~t~~ 1028 (1130)
.|.+.|.++|+.+..+.... ....-.+.|||+|+++.|++++
T Consensus 193 ~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 193 KIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred eEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 99999999999988876531 1123568999999999888877
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=1e-05 Score=85.71 Aligned_cols=204 Identities=9% Similarity=-0.031 Sum_probs=134.8
Q ss_pred CceeEEEEecCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEE
Q 001184 834 DVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKT 911 (1130)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~ 911 (1130)
..+..+++++++..|..+. .+.|..++..+......+.........++++++++.+.++-...+.|.++++.......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 3567899999877777666 68899999987655444433335788999999445555555567889999987543222
Q ss_pred EEecCCCCeeEEEEccCCCeEEEEeC---CCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE--cCC
Q 001184 912 KLKGHQKHITGLAFSTNLNILVSSGS---DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN--HET 986 (1130)
Q Consensus 912 ~l~~h~~~V~~l~~s~dg~~L~s~s~---Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~--~d~ 986 (1130)
...........++++|++..|..+.. .+.|..++++.... .. .... .......+++++++..|.++ ..+
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~~--~~~~---~~~~P~gia~d~~~~~lyv~d~~~~ 189 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RI--LAQD---NLGLPNGLTFDAFSSQLCWVDAGTH 189 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EE--EECT---TCSCEEEEEEETTTTEEEEEETTTT
T ss_pred EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-EE--EEEC---CCCCCcEEEEcCCCCEEEEEECCCC
Confidence 22222245789999997776666554 36788888875321 11 1111 11457889999988777664 467
Q ss_pred cEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEeCCCcccccccCC
Q 001184 987 QLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRLRCRIAP 1049 (1130)
Q Consensus 987 ~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~-~Dg~i~vwd~~~~~~~~~~~~ 1049 (1130)
.|.+++............ ......+++. +..|+.+. ..+.|.++|..+++.+..+..
T Consensus 190 ~I~~~~~~g~~~~~~~~~----~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~ 247 (267)
T 1npe_A 190 RAECLNPAQPGRRKVLEG----LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHP 247 (267)
T ss_dssp EEEEEETTEEEEEEEEEC----CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECC
T ss_pred EEEEEecCCCceEEEecC----CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcc
Confidence 899999986544333322 1234566654 45555555 568999999999988877753
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.1e-05 Score=94.83 Aligned_cols=191 Identities=11% Similarity=0.127 Sum_probs=121.2
Q ss_pred CCeEEEEECCCceeEEEEeCCCCCe--------------------------------------EEEEEeCCCCcEEEEEe
Q 001184 853 GGKVSLFNMMNFKVMTTFMSPPPAS--------------------------------------TFLAFHPQDNNIIAIGM 894 (1130)
Q Consensus 853 dg~i~iwd~~~~~~~~~~~~~~~~i--------------------------------------~~l~~sp~~~~~lasg~ 894 (1130)
+|.|+.+|..+++.+-.+....... ..+++.+ ...+++.+.
T Consensus 181 ~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g~ 259 (599)
T 1w6s_A 181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGT 259 (599)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEEC
T ss_pred CCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEeC
Confidence 5788888888888877765322110 1356667 455666666
Q ss_pred CC----------------CcEEEEEeecCeEEEEEecCCC----------CeeEEEEc-cCC---CeEEEEeCCCcEEEE
Q 001184 895 ED----------------STIQIYNVRVDEVKTKLKGHQK----------HITGLAFS-TNL---NILVSSGSDAQLIFW 944 (1130)
Q Consensus 895 ~d----------------g~v~iwd~~~~~~~~~l~~h~~----------~V~~l~~s-~dg---~~L~s~s~Dg~i~vw 944 (1130)
.+ +.|.-+|.++|+.+-.++.... ++. +... .+| ..++.++.+|.+.+.
T Consensus 260 g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~l 338 (599)
T 1w6s_A 260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTL 338 (599)
T ss_dssp CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEE
T ss_pred CCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEE
Confidence 54 3799999999999877664221 121 2222 567 467788999999999
Q ss_pred ECCCCcccceeeEec----------cCCC-----------------------CCCCeEEEEEcCCCcEEEEE--------
Q 001184 945 NTDTWEKRKSIAIQL----------PAGK-----------------------LPVGETRVQFHSDQVRLLVN-------- 983 (1130)
Q Consensus 945 d~~~~~~~~~~~~~~----------~~~~-----------------------~~~~v~~~~~s~d~~~l~~~-------- 983 (1130)
|..+++.+-...... ..+. -...-..++++|+..++++.
T Consensus 339 D~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~ 418 (599)
T 1w6s_A 339 DRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDW 418 (599)
T ss_dssp ETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEE
T ss_pred ECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceee
Confidence 999987654332110 0000 00011245667766655441
Q ss_pred --------------------------------cCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCC
Q 001184 984 --------------------------------HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG 1031 (1130)
Q Consensus 984 --------------------------------~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg 1031 (1130)
..+.+..||+.+|+.+-...... ++.+-.+...+.+++.++.||
T Consensus 419 ~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~----~~~~g~~~tagg~vf~gt~dg 494 (599)
T 1w6s_A 419 EPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF----AVWGGTMATAGDLVFYGTLDG 494 (599)
T ss_dssp EECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS----CCCSBCEEETTTEEEEECTTS
T ss_pred ecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC----CccCcceEecCCEEEEECCCC
Confidence 23678889999998877764331 222112233567788899999
Q ss_pred cEEEEeCCCcccccccCC
Q 001184 1032 SIGVFDADSLRLRCRIAP 1049 (1130)
Q Consensus 1032 ~i~vwd~~~~~~~~~~~~ 1049 (1130)
.++.||.++|+.+-++..
T Consensus 495 ~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 495 YLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp EEEEEETTTCCEEEEEEC
T ss_pred eEEEEECCCCCEEEEeeC
Confidence 999999999999887753
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.62 E-value=4.1e-06 Score=84.91 Aligned_cols=186 Identities=12% Similarity=0.062 Sum_probs=129.4
Q ss_pred CCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeE--EEEEeCCCCcEEEEEeCCCcEEEEEeecCeE
Q 001184 833 EDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPAST--FLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV 909 (1130)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~--~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 909 (1130)
......+.|+. +.+..+.+ +|.|+++|+++++.+..+ .. .... .+++. ++++.+....++.+.+||.++.+.
T Consensus 54 ~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~ 128 (268)
T 3nok_A 54 NAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQR 128 (268)
T ss_dssp TCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEE
T ss_pred ccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcE
Confidence 44557888873 44444444 688999999999998887 32 3333 35554 456666666789999999999999
Q ss_pred EEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-cCCcE
Q 001184 910 KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQL 988 (1130)
Q Consensus 910 ~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i 988 (1130)
+.++..- ..-+.++ +|++.|+.+..++.|.++|..+.+.......... +..-..+..+.|. +|+..+.. .++.|
T Consensus 129 ~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~-g~~v~~lNeLe~~-dG~lyanvw~s~~I 203 (268)
T 3nok_A 129 ERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLR-GQPVELINELECA-NGVIYANIWHSSDV 203 (268)
T ss_dssp EEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEET-TEECCCEEEEEEE-TTEEEEEETTCSEE
T ss_pred EEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCC-CcccccccccEEe-CCEEEEEECCCCeE
Confidence 9998853 2223444 6788888888899999999999776555443321 1111244566776 77655544 57899
Q ss_pred EEEECCCceeeeeeecC----------CCCCCCeEEEEECCCCCEEEEEe
Q 001184 989 AIYDGSKMECIRQWVPQ----------DVLSSPISSAAYSCNSQLIYATF 1028 (1130)
Q Consensus 989 ~v~d~~~~~~~~~~~~~----------~~~~~~v~~v~~s~dg~~l~t~~ 1028 (1130)
.+.|.++|+.+..+... .....-.+.|+|+|+++.|++++
T Consensus 204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 99999999998887542 11134668999999877666666
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.61 E-value=3.5e-06 Score=85.51 Aligned_cols=208 Identities=9% Similarity=0.102 Sum_probs=137.6
Q ss_pred eeEEEEeCCCCC--eEEEEEeCCCCcEEEEEeCCC--cEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEe-CCC
Q 001184 865 KVMTTFMSPPPA--STFLAFHPQDNNIIAIGMEDS--TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSG-SDA 939 (1130)
Q Consensus 865 ~~~~~~~~~~~~--i~~l~~sp~~~~~lasg~~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s-~Dg 939 (1130)
+.+.++. |... ...+.|+ ++.+..+.+.+| .|+++|+++++.+.++.-. .........++++.|..+. .++
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~ 107 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEec-CCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCC
Confidence 4455564 4433 4789998 357777777766 8999999999999887643 3344444444566666665 478
Q ss_pred cEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEc-CCcEEEEECCCceeeeeeecCCC-C-CCCeEEEE
Q 001184 940 QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQWVPQDV-L-SSPISSAA 1016 (1130)
Q Consensus 940 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~-~-~~~v~~v~ 1016 (1130)
.+.+||.++.+........ . ....+++|+..|+.++ ++.|.++|..+.+.+..+..... . -..++.+.
T Consensus 108 ~v~v~D~~t~~~~~ti~~~----~-----eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe 178 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYD----G-----EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELE 178 (262)
T ss_dssp EEEEEETTTCCEEEEEECS----S-----CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEE
T ss_pred EEEEEECccCcEEEEEECC----C-----CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeE
Confidence 8999999997765544331 1 1133446777777753 67899999999998888765310 0 13445677
Q ss_pred ECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCC-CCCceeeeEEEEEcCCCCCEEEEEeCCCc
Q 001184 1017 YSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQAS-PNSQTVFPLVVTSHPQEPNQLAVGLTDGS 1086 (1130)
Q Consensus 1017 ~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~ 1086 (1130)
|. +|++.+..-.+..|.+.|..+|+....+......+... ..........++|+|....++++|=.--.
T Consensus 179 ~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~ 248 (262)
T 3nol_A 179 WV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPK 248 (262)
T ss_dssp EE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSE
T ss_pred EE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCc
Confidence 76 77655555468899999999999999988664433210 01112234568999976666666644443
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.60 E-value=0.0042 Score=76.53 Aligned_cols=529 Identities=11% Similarity=0.030 Sum_probs=270.9
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 426 (1130)
...|.++....+|. |-.|+.+| +..||..+++... . .......|.++.. .+| .|-.
T Consensus 62 ~~~i~~i~~d~~g~--lWigT~~G-l~~yd~~~~~f~~--~-----------------~~~~~~~i~~i~~-~~g-~lWi 117 (758)
T 3ott_A 62 NTRIYCGVIIDNTY--LYMGTDNG-ILVYNYRADRYEQ--P-----------------ETDFPTDVRTMAL-QGD-TLWL 117 (758)
T ss_dssp SSCEEEEEEETTTE--EEEEETTE-EEEEETTTTEECC--C-----------------SCCCCSCEEEEEE-ETT-EEEE
T ss_pred CceEEEEEEcCCCc--EEEEeCCC-eEEEeCCCCEEEC--c-----------------ccCCCceEEEEEe-cCC-cEEE
Confidence 34689988888885 44566554 7899987754321 0 0011235777754 355 4555
Q ss_pred EeCCCeEEEEEecCCccceeeeee-e-cCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCC------Cc
Q 001184 427 AFTKHLIHLYTYQGSNDLCQSLEI-D-AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGH------EA 498 (1130)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~-~-~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h------~~ 498 (1130)
++.+ -+..+|..+++. ...... . -....|.++....+|. +.+ |..+ -+..+|........+... ..
T Consensus 118 gt~~-Gl~~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~--lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~ 191 (758)
T 3ott_A 118 GALN-GLYTYQLQSRKL-TSFDTRRNGLPNNTIYSIIRTKDNQ--IYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNL 191 (758)
T ss_dssp EETT-EEEEEETTTCCE-EEECHHHHCCSCSCEEEEEECTTCC--EEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSC
T ss_pred EcCC-cceeEeCCCCeE-EEeccCCCCcCCCeEEEEEEcCCCC--EEE-EeCC-CHhhCccCCCceEEecCCCccccccc
Confidence 6655 478888876542 211000 0 1134688888877777 333 3333 477788433333332211 12
Q ss_pred CEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc
Q 001184 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1130)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1130)
.|.++... .++..|..|+. +.+..+|..+.............|.++....+|.+.+.. ++-+.+++..+++
T Consensus 192 ~i~~i~~d--~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT------~~Gl~~~~~~~~~ 262 (758)
T 3ott_A 192 FVNSLLED--TTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT------DNGLYVYHNDTTP 262 (758)
T ss_dssp CEEEEEEE--TTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE------TTEEEEECCTTSC
T ss_pred eeEEEEEE--CCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe------CCceeEEecCCCc
Confidence 47777653 33445555554 457778876543222111123357888888888766654 2348888877665
Q ss_pred eeEEEec------ccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEecc-----CCCCCcceEEEcCCCCEE
Q 001184 579 LKRTYIG------FRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE-----GGLPSLPRLRFNKEGNLL 647 (1130)
Q Consensus 579 ~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~i~~v~~s~~~~~l 647 (1130)
....... .....|.++....+|. |..|+..| +.++.... ........ .....|.++....+|.+.
T Consensus 263 ~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lW 338 (758)
T 3ott_A 263 LQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKGFYW 338 (758)
T ss_dssp CEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCCEE
T ss_pred EEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCCCEE
Confidence 4322111 1122577787777766 44455556 55544322 12222110 112247777777777755
Q ss_pred EEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccC
Q 001184 648 VVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARG 727 (1130)
Q Consensus 648 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1130)
+ |+.+| +..++..++... .+. .+.+.
T Consensus 339 i-Gt~~G-l~~~~~~~~~~~--~~~----------------------~~~~~---------------------------- 364 (758)
T 3ott_A 339 F-GGANG-LIRFTDPAGERH--DAI----------------------WYRMG---------------------------- 364 (758)
T ss_dssp E-EETTE-EEEESCTTSSCC--CCE----------------------EECTT----------------------------
T ss_pred E-eeCCc-ceeecccccccc--eeE----------------------EeccC----------------------------
Confidence 4 45554 445543322000 000 00000
Q ss_pred CCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCccc
Q 001184 728 IEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKA 807 (1130)
Q Consensus 728 ~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 807 (1130)
.. ...-....|.++....+|..-+ ++ ++-+..|+...+...
T Consensus 365 --------------------~~------------~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~~----- 405 (758)
T 3ott_A 365 --------------------DK------------TYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQFI----- 405 (758)
T ss_dssp --------------------CS------------SSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEEE-----
T ss_pred --------------------Cc------------CCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcEE-----
Confidence 00 0000224566777666666443 33 345666654332110
Q ss_pred ccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCc-----eeE---EEEe---C-CCC
Q 001184 808 TAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNF-----KVM---TTFM---S-PPP 875 (1130)
Q Consensus 808 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~-----~~~---~~~~---~-~~~ 875 (1130)
.+..... ........|.++...++|.+.+....+.|.++|..+. ... ..+. + ...
T Consensus 406 -------~~~~~~~------~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 472 (758)
T 3ott_A 406 -------HYNIVDN------TGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGM 472 (758)
T ss_dssp -------EEEEECC------C--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCS
T ss_pred -------EeecCCC------cCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccc
Confidence 0000000 0000234688888888887666544667888886531 111 1221 1 223
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEec---CCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCccc
Q 001184 876 ASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKG---HQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKR 952 (1130)
Q Consensus 876 ~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~---h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~ 952 (1130)
.|.++...+ ++.+.+.++..+-|..+|..+++....... ....+.++....+|...+. +..| +..++..+....
T Consensus 473 ~i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~ 549 (758)
T 3ott_A 473 FINQIIPDN-EGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDESQQ 549 (758)
T ss_dssp CEEEEEECT-TSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--CCCC
T ss_pred eeeeEEEcC-CCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCCceE
Confidence 588888888 677665333344588889887765433211 1245788888888876654 4455 888887764432
Q ss_pred ceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEE-CCCCCEEEEEeCCC
Q 001184 953 KSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAY-SCNSQLIYATFTDG 1031 (1130)
Q Consensus 953 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~-s~dg~~l~t~~~Dg 1031 (1130)
... ..+-....+.++... +|.+.+++ ++.+..+|..+.+... +... ...+....+ .+||. |..|+.+|
T Consensus 550 ~~~----~~gl~~~~i~~i~~~-~g~lWi~t-~~Gl~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~G~-l~fG~~~G 618 (758)
T 3ott_A 550 SIS----FGSFSNNEILSMTCV-KNSIWVST-TNGLWIIDRKTMDARQ-QNMT---NKRFTSLLFDPKEDC-VYLGGADG 618 (758)
T ss_dssp BCC----CCC---CCEEEEEEE-TTEEEEEE-SSCEEEEETTTCCEEE-C--C---CCCCSEEEEETTTTE-EEEECBSE
T ss_pred Eec----ccCCCccceEEEEEC-CCCEEEEC-CCCeEEEcCCCceeEE-ecCC---CCceeeeEEECCCCc-EEEecCCc
Confidence 110 011112457777664 66655554 5668899988765432 2111 223334444 34665 55567677
Q ss_pred cEEEEeCC
Q 001184 1032 SIGVFDAD 1039 (1130)
Q Consensus 1032 ~i~vwd~~ 1039 (1130)
.++ ++..
T Consensus 619 l~~-f~p~ 625 (758)
T 3ott_A 619 FGI-SHSN 625 (758)
T ss_dssp EEE-EEC-
T ss_pred eEE-EChh
Confidence 554 4443
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.6e-06 Score=87.87 Aligned_cols=205 Identities=9% Similarity=0.049 Sum_probs=135.5
Q ss_pred eeEEEEeCCCC--CeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEe-CCCcE
Q 001184 865 KVMTTFMSPPP--ASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSG-SDAQL 941 (1130)
Q Consensus 865 ~~~~~~~~~~~--~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s-~Dg~i 941 (1130)
+.+.++. |.. -...+.|+ ++.+..+.+.+|.|+++|+++++.+..+ - ..........++++.|..+. .++.+
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g~~Ly~ltw~~~~v 118 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDGERLYQLTWTEGLL 118 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECSSCEEEEESSSCEE
T ss_pred EEEEEEc-CCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeCCEEEEEEccCCEE
Confidence 3445553 333 35788887 4678888888999999999999888776 2 23344433344555555544 57889
Q ss_pred EEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEc-CCcEEEEECCCceeeeeeecCCC--CCCCeEEEEEC
Q 001184 942 IFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQWVPQDV--LSSPISSAAYS 1018 (1130)
Q Consensus 942 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~--~~~~v~~v~~s 1018 (1130)
.+||.++.+........ . .- ..+.+|+..|+.++ ++.|.++|..+.+.+..+..... .-..++.+.|.
T Consensus 119 ~V~D~~Tl~~~~ti~~~----~---eG--wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~ 189 (268)
T 3nok_A 119 FTWSGMPPQRERTTRYS----G---EG--WGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA 189 (268)
T ss_dssp EEEETTTTEEEEEEECS----S---CC--CCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred EEEECCcCcEEEEEeCC----C---ce--eEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe
Confidence 99999997765554431 1 11 23336778777754 88999999999998888765321 01245677777
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCC--CCCceeeeEEEEEcCCCCCEEEEEeCC
Q 001184 1019 CNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQAS--PNSQTVFPLVVTSHPQEPNQLAVGLTD 1084 (1130)
Q Consensus 1019 ~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~D 1084 (1130)
+|++.+..-.+..|.+.|.++|+.+..+......+... ..........++|+|....+++||=.-
T Consensus 190 -dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~W 256 (268)
T 3nok_A 190 -NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLW 256 (268)
T ss_dssp -TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTC
T ss_pred -CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCC
Confidence 77655555468899999999999998888654322110 011112345699999777777776443
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.2e-05 Score=94.78 Aligned_cols=191 Identities=13% Similarity=0.109 Sum_probs=122.1
Q ss_pred CCeEEEEECCCceeEEEEeCCCCC--------------------------------------eEEEEEeCCCCcEEEEEe
Q 001184 853 GGKVSLFNMMNFKVMTTFMSPPPA--------------------------------------STFLAFHPQDNNIIAIGM 894 (1130)
Q Consensus 853 dg~i~iwd~~~~~~~~~~~~~~~~--------------------------------------i~~l~~sp~~~~~lasg~ 894 (1130)
++.|..+|..+++.+.++...... ...+++.+ ...+++.+.
T Consensus 175 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~-~~g~vy~~~ 253 (571)
T 2ad6_A 175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGS 253 (571)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEEC
T ss_pred CCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcC-CCCeEEEEC
Confidence 578888898888888776532211 02356777 444555555
Q ss_pred CC----------------CcEEEEEeecCeEEEEEec--CC--------CCeeEEEEccCCC---eEEEEeCCCcEEEEE
Q 001184 895 ED----------------STIQIYNVRVDEVKTKLKG--HQ--------KHITGLAFSTNLN---ILVSSGSDAQLIFWN 945 (1130)
Q Consensus 895 ~d----------------g~v~iwd~~~~~~~~~l~~--h~--------~~V~~l~~s~dg~---~L~s~s~Dg~i~vwd 945 (1130)
.+ +.|..+|..+|+.+-.++. |. .++. +....+|+ .++.++.+|.+.+.|
T Consensus 254 g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD 332 (571)
T 2ad6_A 254 GNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLN 332 (571)
T ss_dssp CCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEE
T ss_pred CCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEE
Confidence 32 3599999999998877653 21 2221 22234774 577888999999999
Q ss_pred CCCCcccceeeEec----------cCCC------------C------C-----CCeEEEEEcCCCcEEEEE---------
Q 001184 946 TDTWEKRKSIAIQL----------PAGK------------L------P-----VGETRVQFHSDQVRLLVN--------- 983 (1130)
Q Consensus 946 ~~~~~~~~~~~~~~----------~~~~------------~------~-----~~v~~~~~s~d~~~l~~~--------- 983 (1130)
..+++.+-...... ..+. . + ..-..++++|+..++++.
T Consensus 333 ~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~ 412 (571)
T 2ad6_A 333 RENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWE 412 (571)
T ss_dssp TTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEE
T ss_pred CCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhcccccc
Confidence 99987643322110 0000 0 0 001246788887777653
Q ss_pred -----------------------------cCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEE
Q 001184 984 -----------------------------HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIG 1034 (1130)
Q Consensus 984 -----------------------------~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~ 1034 (1130)
.++.+..||+.+++.+..+.... .+.+..+...+.++++++.||.|+
T Consensus 413 ~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~----~~~~~~~~t~gg~v~~g~~dg~l~ 488 (571)
T 2ad6_A 413 PFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF----AAWGGTLYTKGGLVWYATLDGYLK 488 (571)
T ss_dssp ECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS----CCCSBCEEETTTEEEEECTTSEEE
T ss_pred ccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC----CccceeEEECCCEEEEEcCCCeEE
Confidence 23679999999999887765431 222223333566778899999999
Q ss_pred EEeCCCcccccccCC
Q 001184 1035 VFDADSLRLRCRIAP 1049 (1130)
Q Consensus 1035 vwd~~~~~~~~~~~~ 1049 (1130)
+||..+|+.+.++..
T Consensus 489 a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 489 ALDNKDGKELWNFKM 503 (571)
T ss_dssp EEETTTCCEEEEEEC
T ss_pred EEECCCCCEEEEEeC
Confidence 999999999887764
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=6.7e-06 Score=96.62 Aligned_cols=249 Identities=13% Similarity=0.126 Sum_probs=153.5
Q ss_pred EEEecCCCE----EEEEe-CCeEEEEECCCceeEEEEeCCCC----CeE-EEEEeCCCCcEEEEEe------CCCcEEEE
Q 001184 839 VALSKNDSY----VMSAG-GGKVSLFNMMNFKVMTTFMSPPP----AST-FLAFHPQDNNIIAIGM------EDSTIQIY 902 (1130)
Q Consensus 839 l~~s~dg~~----la~~~-dg~i~iwd~~~~~~~~~~~~~~~----~i~-~l~~sp~~~~~lasg~------~dg~v~iw 902 (1130)
++++|.+.. |++++ ++.|..+|..+|+.+-....... .+. ...+. ++. +++++ .+|.|+-+
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~--~g~-V~vg~~g~e~g~~g~v~A~ 187 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV--KDK-VIIGSSGAELGVRGYLTAY 187 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TTE-EEECCBCGGGTCCCEEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE--CCE-EEEEecccccCCCCeEEEE
Confidence 455443333 66665 89999999999999877654321 222 11222 444 44454 37999999
Q ss_pred EeecCeEEEEEecCCCC-------------------------------------e-eEEEEccCCCeEEEEeCCC-----
Q 001184 903 NVRVDEVKTKLKGHQKH-------------------------------------I-TGLAFSTNLNILVSSGSDA----- 939 (1130)
Q Consensus 903 d~~~~~~~~~l~~h~~~-------------------------------------V-~~l~~s~dg~~L~s~s~Dg----- 939 (1130)
|..+|+.+-++...... + ..+++.++...++.+..++
T Consensus 188 D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~ 267 (599)
T 1w6s_A 188 DVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNE 267 (599)
T ss_dssp ETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCG
T ss_pred ECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccC
Confidence 99999988776532211 0 1356667777788776653
Q ss_pred -----------cEEEEECCCCcccceeeEeccCCC-----CCCCeEEEEEc-CCC---cEEEE-EcCCcEEEEECCCcee
Q 001184 940 -----------QLIFWNTDTWEKRKSIAIQLPAGK-----LPVGETRVQFH-SDQ---VRLLV-NHETQLAIYDGSKMEC 998 (1130)
Q Consensus 940 -----------~i~vwd~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~s-~d~---~~l~~-~~d~~i~v~d~~~~~~ 998 (1130)
.|..+|.++++.+-.. +...+. ......-+... .+| ..++. +.++.++++|..+|+.
T Consensus 268 ~~r~gd~~y~~sv~Ald~~TG~~~W~~--q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 345 (599)
T 1w6s_A 268 TMRPGDNKWTMTIFGRDADTGEAKFGY--QKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGAL 345 (599)
T ss_dssp GGSCSCCTTSSEEEEEETTTCCEEEEE--ESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred cccCCCccccceEEEEeCCCCceeeEe--ecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCE
Confidence 7999999998764332 221110 00111122222 567 34444 5789999999999998
Q ss_pred eeeeecCC----------CCCCCe--------------------------EEEEECCCCCEEEEEe--------------
Q 001184 999 IRQWVPQD----------VLSSPI--------------------------SSAAYSCNSQLIYATF-------------- 1028 (1130)
Q Consensus 999 ~~~~~~~~----------~~~~~v--------------------------~~v~~s~dg~~l~t~~-------------- 1028 (1130)
+....... ....++ ..++|+|+.+++++..
T Consensus 346 lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~ 425 (599)
T 1w6s_A 346 VSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPY 425 (599)
T ss_dssp EEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCC
T ss_pred eecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccc
Confidence 87654321 001111 2467788777666532
Q ss_pred -------------------------CCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeC
Q 001184 1029 -------------------------TDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLT 1083 (1130)
Q Consensus 1029 -------------------------~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 1083 (1130)
.+|.|..||+.+|+.+-+..... +. .+. ++.. .+.+++.++.
T Consensus 426 ~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~--~~---~~g---~~~t-----agg~vf~gt~ 492 (599)
T 1w6s_A 426 KAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF--AV---WGG---TMAT-----AGDLVFYGTL 492 (599)
T ss_dssp CTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS--CC---CSB---CEEE-----TTTEEEEECT
T ss_pred cCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC--Cc---cCc---ceEe-----cCCEEEEECC
Confidence 34788999999998776553211 00 011 1111 3568888999
Q ss_pred CCcEEEEeCCCCccCCcccccC
Q 001184 1084 DGSVKVIEPSETERKWGVAVPV 1105 (1130)
Q Consensus 1084 Dg~v~vW~~~~~~~~w~~~~p~ 1105 (1130)
||.|+.||..+++..|....|.
T Consensus 493 dg~l~A~D~~tG~~lW~~~l~~ 514 (599)
T 1w6s_A 493 DGYLKARDSDTGDLLWKFKIPS 514 (599)
T ss_dssp TSEEEEEETTTCCEEEEEECSS
T ss_pred CCeEEEEECCCCCEEEEeeCCC
Confidence 9999999999999999886653
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.8e-05 Score=93.36 Aligned_cols=110 Identities=8% Similarity=0.076 Sum_probs=68.3
Q ss_pred cEEEEEec-CCcEEEEEc-cCCcceeeecCCCcc-----------EEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc
Q 001184 512 HFIFSTAV-DGKIKAWLY-DNVGSRVDYDAPGLW-----------CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1130)
Q Consensus 512 ~~l~s~s~-dg~i~vwd~-~~~~~~~~~~~~~~~-----------v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1130)
..++.++. ++.|..+|. .+++.+..+...... ...+++ ++..+++++. ++.|+.+|..+|+
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~----dg~l~alD~~tG~ 136 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQA----NGHLLALDAKTGK 136 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeC----CCEEEEEECCCCC
Confidence 35556666 777888887 777777665433210 011222 3455666643 7899999999999
Q ss_pred eeEEEecccC---ceeE-EEEEcCCCCEEEEEeC------CCcEEEEeCCCCceeEEEecc
Q 001184 579 LKRTYIGFRK---KSAG-VVQFDTTRNRILAAGE------DNQIKFWDMDNVNMLTSTEAE 629 (1130)
Q Consensus 579 ~~~~~~~~~~---~~v~-~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~ 629 (1130)
.+..+..... ..+. ...+ .+..+++++. ++.|+.+|..+|+.+..+...
T Consensus 137 ~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~ 195 (571)
T 2ad6_A 137 INWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT 195 (571)
T ss_dssp EEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccC
Confidence 9877653220 0111 1111 1346666654 799999999999998877643
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.56 E-value=0.0055 Score=75.55 Aligned_cols=573 Identities=12% Similarity=0.115 Sum_probs=298.8
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 426 (1130)
...|.++.-..+|. |=.|+.+| +..||-..-+... .. .......|.++.-..+|. |-.
T Consensus 21 ~n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~~~~~~--------~~----------~~~~~~~i~~i~~d~~g~-lWi 78 (758)
T 3ott_A 21 ASVVSCFLQDSEGL--IWIGSNKG-LFSYDGYSTQQHF--------TY----------GENNNTRIYCGVIIDNTY-LYM 78 (758)
T ss_dssp CCCEEEEEECTTSC--EEEEESSC-EEEECSSCEEECS--------CT----------TSTTSSCEEEEEEETTTE-EEE
T ss_pred cceEEEEEECCCCC--EEEEECCC-ccccCCCceEEEE--------cc----------CCCCCceEEEEEEcCCCc-EEE
Confidence 45799999999996 44466666 5567632211100 00 011235688988887774 445
Q ss_pred EeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEec-----CCCcCEE
Q 001184 427 AFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE-----GHEAPVY 501 (1130)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~-----~h~~~v~ 501 (1130)
|+.+| +..||..+.+... ........|.++.. .+|. |..++.+ -+..+|.....+..+. .....|.
T Consensus 79 gT~~G-l~~yd~~~~~f~~---~~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~ 149 (758)
T 3ott_A 79 GTDNG-ILVYNYRADRYEQ---PETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIY 149 (758)
T ss_dssp EETTE-EEEEETTTTEECC---CSCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEE
T ss_pred EeCCC-eEEEeCCCCEEEC---cccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEE
Confidence 56665 7899987753211 11112335777654 4554 3334444 5788884333333331 1234577
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcceee-ecC----CCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD-YDA----PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE 576 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~----~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1130)
++... .++. |..++.+ .+..++..+...... ... ....|.++...+++..|..++ ++-|..+|..+
T Consensus 150 ~i~~d--~~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt-----~~Gl~~~~~~~ 220 (758)
T 3ott_A 150 SIIRT--KDNQ-IYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGT-----EGYLFQYFPST 220 (758)
T ss_dssp EEEEC--TTCC-EEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEE-----EEEEEEEETTT
T ss_pred EEEEc--CCCC-EEEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEE-----CCCCeEEcCCC
Confidence 77653 3444 4445544 466777655432211 111 122488888888777555554 33588899877
Q ss_pred CceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccC-----CCCCcceEEEcCCCCEEEEEe
Q 001184 577 GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEG-----GLPSLPRLRFNKEGNLLVVTT 651 (1130)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----~~~~i~~v~~s~~~~~l~~~~ 651 (1130)
++... +.......|.++....+|...+ |+. +-+.+++..+++......... ....|.++....+|.+- .|+
T Consensus 221 ~~~~~-~~~l~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-iGT 296 (758)
T 3ott_A 221 GQIKQ-TEAFHNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIW-LGT 296 (758)
T ss_dssp TEEEE-EEEEEEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEE-EEE
T ss_pred CeEEe-ccCCCCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEE-EEe
Confidence 65432 2222223577777777776544 454 458889887765432221111 11247777777777644 455
Q ss_pred CCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCc
Q 001184 652 ADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKP 731 (1130)
Q Consensus 652 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (1130)
..| +.++..... ...+
T Consensus 297 ~~G-l~~~~~~~~---~~~~------------------------------------------------------------ 312 (758)
T 3ott_A 297 DYG-ISLSRYNSA---LQFI------------------------------------------------------------ 312 (758)
T ss_dssp SSS-EEEECCCC----CEEE------------------------------------------------------------
T ss_pred CCc-ccccccCCc---eeEE------------------------------------------------------------
Confidence 555 444322111 0000
Q ss_pred ccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCccccccc
Q 001184 732 RNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAV 811 (1130)
Q Consensus 732 ~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 811 (1130)
...... .......|.++....+|..-+. +.+| +..++...+...
T Consensus 313 -------------~~~~~~------------~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~~--------- 356 (758)
T 3ott_A 313 -------------PISQIT------------GTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGERH--------- 356 (758)
T ss_dssp -------------EHHHHS------------CSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSCC---------
T ss_pred -------------ecccCC------------CCCCCceEEEEEEcCCCCEEEe-eCCc-ceeecccccccc---------
Confidence 000000 0001234666666666664443 3444 333432211000
Q ss_pred ccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEe-C-----CCCCeEEEEEeCC
Q 001184 812 APQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFM-S-----PPPASTFLAFHPQ 885 (1130)
Q Consensus 812 ~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~-~-----~~~~i~~l~~sp~ 885 (1130)
....+...... ..-....|.++....+|.+-+.. ++.|..||..+++...... . ....|.++...+
T Consensus 357 ~~~~~~~~~~~------~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~- 428 (758)
T 3ott_A 357 DAIWYRMGDKT------YPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT- 428 (758)
T ss_dssp CCEEECTTCSS------SCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-
T ss_pred eeEEeccCCcC------CCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-
Confidence 00000000000 00123568899988888866544 6789999998876543221 1 123577887766
Q ss_pred CCcEEEEEeCCCcEEEEEeec------CeEE--EEEec----CCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccc
Q 001184 886 DNNIIAIGMEDSTIQIYNVRV------DEVK--TKLKG----HQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRK 953 (1130)
Q Consensus 886 ~~~~lasg~~dg~v~iwd~~~------~~~~--~~l~~----h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~ 953 (1130)
++.+. .|+..+-|.++|..+ .... ..+.. ....|.++...++|...+.++..+-|..+|..+++...
T Consensus 429 ~g~lW-igT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~ 507 (758)
T 3ott_A 429 AGQLW-ISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTK 507 (758)
T ss_dssp TSEEE-EEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEE
T ss_pred CCCEE-EEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEE
Confidence 55544 476666688888653 1111 12211 12358899999889877644444558888987654321
Q ss_pred eeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcE
Q 001184 954 SIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSI 1033 (1130)
Q Consensus 954 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i 1033 (1130)
...........+.++....+|.+.+++. +.+..|+..++.... +....-....|.++... +|. |..++..| |
T Consensus 508 ---~~~~~~~~~~~~~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~-~~~~gl~~~~i~~i~~~-~g~-lWi~t~~G-l 579 (758)
T 3ott_A 508 ---LFADELTGEKSPNYLLCDEDGLLWVGFH-GGVMRINPKDESQQS-ISFGSFSNNEILSMTCV-KNS-IWVSTTNG-L 579 (758)
T ss_dssp ---ECTTTSCGGGCEEEEEECTTSCEEEEET-TEEEEECC--CCCCB-CCCCC---CCEEEEEEE-TTE-EEEEESSC-E
T ss_pred ---ecCCCcCCCcccceEEECCCCCEEEEec-CceEEEecCCCceEE-ecccCCCccceEEEEEC-CCC-EEEECCCC-e
Confidence 1111111124577888888998887764 568899887654322 21111113568888764 554 55555555 7
Q ss_pred EEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 001184 1034 GVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSE 1094 (1130)
Q Consensus 1034 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~ 1094 (1130)
..+|..+.+... +. .+. .... ...+...+ ..|..|+.+| +..+++..
T Consensus 580 ~~~~~~~~~~~~-~~----~~~-----~~~~--~~~~~~~~-G~l~fG~~~G-l~~f~p~~ 626 (758)
T 3ott_A 580 WIIDRKTMDARQ-QN----MTN-----KRFT--SLLFDPKE-DCVYLGGADG-FGISHSNL 626 (758)
T ss_dssp EEEETTTCCEEE-C------CC-----CCCS--EEEEETTT-TEEEEECBSE-EEEEEC--
T ss_pred EEEcCCCceeEE-ec----CCC-----Ccee--eeEEECCC-CcEEEecCCc-eEEEChhh
Confidence 778888765432 11 011 0111 12333333 4688888888 66778764
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.5e-05 Score=80.19 Aligned_cols=189 Identities=12% Similarity=0.124 Sum_probs=131.1
Q ss_pred CCCceeEEEEecCCCEEEEEe-C--CeEEEEECCCceeEEEEeCCCCC-eEEEEEeCCCCcEEEEEeCCCcEEEEEeecC
Q 001184 832 AEDVVPCVALSKNDSYVMSAG-G--GKVSLFNMMNFKVMTTFMSPPPA-STFLAFHPQDNNIIAIGMEDSTIQIYNVRVD 907 (1130)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~-d--g~i~iwd~~~~~~~~~~~~~~~~-i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 907 (1130)
.......+.|+. +.+..+.+ + ..|+.+|+.+++.+......... -..+++. ++++.+....++.+.+||.++.
T Consensus 19 ~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl 95 (243)
T 3mbr_X 19 TTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATL 95 (243)
T ss_dssp TTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTT
T ss_pred CccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcC
Confidence 345677899986 45555544 3 47999999999999988754332 1334444 4566666677899999999999
Q ss_pred eEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-cCC
Q 001184 908 EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HET 986 (1130)
Q Consensus 908 ~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~ 986 (1130)
+.+.++..... =.++ .+|++.|+.+..++.|.++|..+.+.......... +..-..+..+.+. +|+..+.. .++
T Consensus 96 ~~~~ti~~~~~-Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~-g~~~~~lNeLe~~-~G~lyanvw~s~ 170 (243)
T 3mbr_X 96 TPRARFRYPGE-GWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAG-GRPLDNLNELEWV-NGELLANVWLTS 170 (243)
T ss_dssp EEEEEEECSSC-CCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEET-TEECCCEEEEEEE-TTEEEEEETTTT
T ss_pred cEEEEEeCCCC-ceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccC-CcccccceeeEEe-CCEEEEEECCCC
Confidence 99999875432 2344 46788888888889999999999776555443321 1111234455655 66655544 578
Q ss_pred cEEEEECCCceeeeeeecCC----------CCCCCeEEEEECCCCCEEEEEe
Q 001184 987 QLAIYDGSKMECIRQWVPQD----------VLSSPISSAAYSCNSQLIYATF 1028 (1130)
Q Consensus 987 ~i~v~d~~~~~~~~~~~~~~----------~~~~~v~~v~~s~dg~~l~t~~ 1028 (1130)
.|.+.|..+|+.+..+.... ....-.+.|+++|+++.|++.+
T Consensus 171 ~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 171 RIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred eEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 99999999999988876331 1124568999999988777777
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.55 E-value=7e-06 Score=99.37 Aligned_cols=277 Identities=9% Similarity=0.035 Sum_probs=153.8
Q ss_pred EEEEec-CCCeEEEEEeCcC-----------eEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC
Q 001184 352 SMDFHP-FHHTLLVVGCGDG-----------EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1130)
Q Consensus 352 ~v~fsp-dg~~llasg~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 419 (1130)
++++.| +|+ +++.|+.+. .+.+||..+++..... .....+.....++++.+
T Consensus 190 ~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~----------------~~~~~~~~~~~~~~~~~ 252 (656)
T 1k3i_A 190 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT----------------VTVTKHDMFCPGISMDG 252 (656)
T ss_dssp EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE----------------EEECSCCCSSCEEEECT
T ss_pred eEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCc----------------ccCCCCCCccccccCCC
Confidence 667788 776 778876542 5889999887643210 01122333445678889
Q ss_pred CCCEEEEEeC-CCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEc-CC-----CcEEEEe-cCCCeee
Q 001184 420 DGNFIGVAFT-KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG-DD-----KLIRVWD-LSGRKLF 491 (1130)
Q Consensus 420 dg~~las~~~-d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s-~d-----~~v~iwd-~~~~~~~ 491 (1130)
+|+.+++|+. +..+.+||..+++-.. ...+... ..-.+++..++|+ +++.|+ .+ ..+.+|| .+++. .
T Consensus 253 ~g~lyv~GG~~~~~v~~yd~~t~~W~~-~~~~~~~-R~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W-~ 327 (656)
T 1k3i_A 253 NGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQVA-RGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTW-T 327 (656)
T ss_dssp TSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSSC-CSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEE-E
T ss_pred CCCEEEeCCCCCCceEEecCcCCceeE-CCCCCcc-ccccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCcc-e
Confidence 9999999984 4589999998764221 1112111 1123456667888 777777 44 5789999 44433 2
Q ss_pred EecCCC-cCE----EEEeecccCCccEEEEEecCC---------cEEEEEccCCcceeeecCC---------CccEEEEE
Q 001184 492 QFEGHE-APV----YSVCPHQKENIHFIFSTAVDG---------KIKAWLYDNVGSRVDYDAP---------GLWCTTML 548 (1130)
Q Consensus 492 ~~~~h~-~~v----~~~~~~~~~~~~~l~s~s~dg---------~i~vwd~~~~~~~~~~~~~---------~~~v~~~~ 548 (1130)
.+.... .+. ....+ ..++..++.++.+| .+..||..+..-....... ...-.++.
T Consensus 328 ~~~~~~~~p~~~~~~~~~~--~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~ 405 (656)
T 1k3i_A 328 SLPNAKVNPMLTADKQGLY--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 405 (656)
T ss_dssp EETTSCSGGGCCCCTTGGG--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred eCCCcccccccccccccee--ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence 221000 000 00011 12334455555544 4567777665432211111 11224445
Q ss_pred Eec-CCCeEEEeeecCC----CCc---EEEEeeCCCCceeEEE--ecccCceeEEEEEcCCCCEEEEEeCC---------
Q 001184 549 YSA-DGSRLFSCGTSKE----GDS---HLVEWNESEGALKRTY--IGFRKKSAGVVQFDTTRNRILAAGED--------- 609 (1130)
Q Consensus 549 ~s~-~~~~l~~~~~~~~----~~~---~i~~wd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d--------- 609 (1130)
|.. +++.++.++.... ... .|.+||..+....... .........+++..|+++.++.|+.+
T Consensus 406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~ 485 (656)
T 1k3i_A 406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 485 (656)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCC
Confidence 544 6777777764210 011 6888998876654432 21222223345667899999998754
Q ss_pred --CcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeC
Q 001184 610 --NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTA 652 (1130)
Q Consensus 610 --g~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~ 652 (1130)
..+.+||..+.+....-..........+..+.|++++++.|+.
T Consensus 486 ~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 486 PVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp BCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4689999987664332211111112234556789999999885
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=0.00016 Score=85.32 Aligned_cols=193 Identities=9% Similarity=0.122 Sum_probs=117.0
Q ss_pred EEEEecCCCEEEEEe---------------------C----CeEEEEECCCceeEEEEeC--CCC-------CeEEEEEe
Q 001184 838 CVALSKNDSYVMSAG---------------------G----GKVSLFNMMNFKVMTTFMS--PPP-------ASTFLAFH 883 (1130)
Q Consensus 838 ~l~~s~dg~~la~~~---------------------d----g~i~iwd~~~~~~~~~~~~--~~~-------~i~~l~~s 883 (1130)
.++++++...+..+. | +.|..+|..+++.+-.++. |.. ...-+...
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~ 329 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYK 329 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeee
Confidence 467777777776554 1 5799999999999988763 211 11112222
Q ss_pred -CCCC---cEEEEEeCCCcEEEEEeecCeEEEEEecCCC--Ce-------------------------------------
Q 001184 884 -PQDN---NIIAIGMEDSTIQIYNVRVDEVKTKLKGHQK--HI------------------------------------- 920 (1130)
Q Consensus 884 -p~~~---~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~--~V------------------------------------- 920 (1130)
. ++ .+++.++.+|.++++|..+|+.+..+..... ..
T Consensus 330 ~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~ 408 (582)
T 1flg_A 330 AK-DGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF 408 (582)
T ss_dssp CS-SSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred cC-CCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence 3 45 4788899999999999999998876654320 00
Q ss_pred ------eEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECC
Q 001184 921 ------TGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGS 994 (1130)
Q Consensus 921 ------~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~ 994 (1130)
..++++|+...+++...+-...++..... ...+ .......+...|++ ...++.+..||+.
T Consensus 409 ~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~---------~~~g-~~~~g~~~~~~p~~----~~~~G~l~A~D~~ 474 (582)
T 1flg_A 409 LGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVS---------YTKG-SAYLGMGFRIKRMY----DDHVGSLRAMDPV 474 (582)
T ss_dssp TCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCC---------CCTT-SCCCCEEEEEEESC----SSCSEEEEEECTT
T ss_pred ccccCCCCceECCCCCEEEEechhcceeeeccccc---------ccCC-CceeccceeecCCC----CCCcceEEEEECC
Confidence 13455665556665555544444433210 0000 00001111111221 1235789999999
Q ss_pred CceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCC
Q 001184 995 KMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAP 1049 (1130)
Q Consensus 995 ~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1049 (1130)
+|+.+-...... ++..-.....+.+++.++.||.++.||.++|+.+-++..
T Consensus 475 tG~~~W~~~~~~----~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 475 SGKVVWEHKEHL----PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp TCCEEEEEEESS----CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCCEEEEecCCC----CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 999887665432 222212223467788899999999999999999988764
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.3e-05 Score=98.26 Aligned_cols=247 Identities=11% Similarity=0.013 Sum_probs=132.7
Q ss_pred CEEEEEEe-cCCCeEEEEEeCcC----eEEEEeCCCC-ceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCC
Q 001184 349 SVVSMDFH-PFHHTLLVVGCGDG----EITLWDVGLR-ERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1130)
Q Consensus 349 ~V~~v~fs-pdg~~llasg~~dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 422 (1130)
.+...+|| |||++++++...+| .|+++|+.+| +.+.. .+. .....++|+|||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~------------------~~~---~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD------------------KVS---GTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC------------------CEE---EECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc------------------ccc---CceeeEEEecCCC
Confidence 78899999 99997555555444 4999999998 63321 011 1134688999999
Q ss_pred EEEEEeCC-----CeEEEEEecCCccceeeeeee-cCCCCeeEEEEecCCCceEEEEEc-CCCcEEEEe-cCCC-ee--e
Q 001184 423 FIGVAFTK-----HLIHLYTYQGSNDLCQSLEID-AHVGGVNDLAFSYPNKQLCIVTCG-DDKLIRVWD-LSGR-KL--F 491 (1130)
Q Consensus 423 ~las~~~d-----~~i~vwd~~~~~~~~~~~~~~-~h~~~V~~i~~s~d~~~l~l~s~s-~d~~v~iwd-~~~~-~~--~ 491 (1130)
.|+....| ..|.++++.++..... ..+. .+......+.|||||+.+++.+.. ....|.++| .++. .. .
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~-lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDV-CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCE-EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcE-EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 88887765 2578888877642211 1222 233456788999999963333322 244678888 3331 22 3
Q ss_pred Eec-CCCcCEEEEeecccCCccEEEEEecC--C--cEEEEEccCCcceee-ecCCCc--cEEEEEEecCCCeEEEeeecC
Q 001184 492 QFE-GHEAPVYSVCPHQKENIHFIFSTAVD--G--KIKAWLYDNVGSRVD-YDAPGL--WCTTMLYSADGSRLFSCGTSK 563 (1130)
Q Consensus 492 ~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d--g--~i~vwd~~~~~~~~~-~~~~~~--~v~~~~~s~~~~~l~~~~~~~ 563 (1130)
.+. +......++.|+ .++.+++....+ + .|..+++.+...... +..+.. .+..+. +.+..|+.... .
T Consensus 313 ~l~~~~~~~~~s~~~~--~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~--~~~~~lv~~~~-~ 387 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMH--GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIA--VRSNYLVVAGR-R 387 (751)
T ss_dssp ESSCCCTTCCEEEEEE--TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEE--ECSSEEEEEEE-E
T ss_pred EeecCCCCceEEEeee--eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEE--EECCEEEEEEE-e
Confidence 333 344455555442 222344444443 3 455566654222122 222332 344444 45666665543 2
Q ss_pred CCCcEEEEeeC-------CCCceeEEEecccCceeEEEEE----cCCCC-EEEEEeCC---CcEEEEeCCCCce
Q 001184 564 EGDSHLVEWNE-------SEGALKRTYIGFRKKSAGVVQF----DTTRN-RILAAGED---NQIKFWDMDNVNM 622 (1130)
Q Consensus 564 ~~~~~i~~wd~-------~~~~~~~~~~~~~~~~v~~~~~----~~~~~-~l~~~~~d---g~i~vwd~~~~~~ 622 (1130)
++...|+++++ .+++....+.-.....+..+.+ +++++ .+++.+.. ..++.+|+.+++.
T Consensus 388 ~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 388 AGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred CCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 34557788885 3444133332111111222322 34554 44443332 4678888877764
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.3e-05 Score=78.89 Aligned_cols=209 Identities=10% Similarity=0.095 Sum_probs=135.2
Q ss_pred eeEEEEeCCC--CCeEEEEEeCCCCcEEEEEeCCC--cEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEe-CCC
Q 001184 865 KVMTTFMSPP--PASTFLAFHPQDNNIIAIGMEDS--TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSG-SDA 939 (1130)
Q Consensus 865 ~~~~~~~~~~--~~i~~l~~sp~~~~~lasg~~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s-~Dg 939 (1130)
+.+.++. |. .-...+.|++ +.+..+.+.+| .|+.+|+++++.+.++.-.. .........+++.|.... .++
T Consensus 10 ~v~~~~p-hd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~~fgeGi~~~~~~ly~ltw~~~ 85 (243)
T 3mbr_X 10 RVVKRYP-HDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-PYFGAGIVAWRDRLIQLTWRNH 85 (243)
T ss_dssp EEEEEEE-CCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEcC-CCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-CcceeEEEEeCCEEEEEEeeCC
Confidence 4555663 43 3467899986 56666666654 89999999999998876433 233333344455555544 578
Q ss_pred cEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-cCCcEEEEECCCceeeeeeecCCC--CCCCeEEEE
Q 001184 940 QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKMECIRQWVPQDV--LSSPISSAA 1016 (1130)
Q Consensus 940 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~--~~~~v~~v~ 1016 (1130)
.+.+||.++.+........ . .- ..+.+|+..|+++ .++.|.++|..+.+.+..+..... .-..++.+.
T Consensus 86 ~v~v~D~~tl~~~~ti~~~----~---~G--wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe 156 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRYP----G---EG--WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELE 156 (243)
T ss_dssp EEEEEETTTTEEEEEEECS----S---CC--CEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EEEEEECCcCcEEEEEeCC----C---Cc--eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeE
Confidence 9999999997765544321 1 11 3334567766664 478899999999998888765321 013456677
Q ss_pred ECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCC--CCceeeeEEEEEcCCCCCEEEEEeCCCcE
Q 001184 1017 YSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASP--NSQTVFPLVVTSHPQEPNQLAVGLTDGSV 1087 (1130)
Q Consensus 1017 ~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v 1087 (1130)
+. +|++.+..-.+..|.+.|..+|+.+..+......+.... .........++|+|....+++||=.--.+
T Consensus 157 ~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~ 228 (243)
T 3mbr_X 157 WV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPML 228 (243)
T ss_dssp EE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEE
T ss_pred Ee-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcE
Confidence 65 776555554678999999999999998886654332211 11112345689999766677776544433
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=0.00015 Score=85.34 Aligned_cols=192 Identities=11% Similarity=0.029 Sum_probs=117.3
Q ss_pred EEEEcCCCcEEEEe-cCCCeeeEecCCCcCE---------EEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCC
Q 001184 471 IVTCGDDKLIRVWD-LSGRKLFQFEGHEAPV---------YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP 540 (1130)
Q Consensus 471 l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v---------~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 540 (1130)
++.++.++.|.-+| .+|+.+-++....... ..+++ .+..++.++.|+.|..+|.++++........
T Consensus 71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 44444433488899 7899887775432210 11111 2357888889999999999999888765543
Q ss_pred Cc----cEE-EEEEec---CCC-eEEEeeecC--CCCcEEEEeeCCCCceeEEEecccC---------------------
Q 001184 541 GL----WCT-TMLYSA---DGS-RLFSCGTSK--EGDSHLVEWNESEGALKRTYIGFRK--------------------- 588 (1130)
Q Consensus 541 ~~----~v~-~~~~s~---~~~-~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~--------------------- 588 (1130)
.. .+. +..+.. +|+ .+++++... ..++.|+-+|..+|+.+........
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 21 111 111111 233 455543110 1268999999999998876543110
Q ss_pred -------------------ceeEEEEEcCCCCEEEEEeC--------------------C----CcEEEEeCCCCceeEE
Q 001184 589 -------------------KSAGVVQFDTTRNRILAAGE--------------------D----NQIKFWDMDNVNMLTS 625 (1130)
Q Consensus 589 -------------------~~v~~~~~~~~~~~l~~~~~--------------------d----g~i~vwd~~~~~~~~~ 625 (1130)
......++.|+...++.+.. | +.|..+|..+|+.+-.
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 00112466677778887663 2 5899999999999888
Q ss_pred EeccCCCC----Ccc-eEEEc---CCCC---EEEEEeCCCcEEEEEcCCCch
Q 001184 626 TEAEGGLP----SLP-RLRFN---KEGN---LLVVTTADQGIKILANADGLR 666 (1130)
Q Consensus 626 ~~~~~~~~----~i~-~v~~s---~~~~---~l~~~~~dg~i~iw~~~~~~~ 666 (1130)
++...+.. .+. -+.+. .+|+ .++.++.+|.++++|..++..
T Consensus 307 ~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 358 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKL 358 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCE
Confidence 76532210 011 12222 4674 788899999999999998843
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=6.8e-05 Score=81.79 Aligned_cols=252 Identities=9% Similarity=0.042 Sum_probs=147.4
Q ss_pred cceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcc---ee-----ccCCCCCCCceeEE
Q 001184 768 SKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLL---MT-----NDVPENAEDVVPCV 839 (1130)
Q Consensus 768 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~---~~-----~~~~~~~~~~i~~l 839 (1130)
.....+++.++|..+++...++.|..|+....... .|....... .. ... ......+..+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~------------~~~~~~~~~~~~~~~g~~~~~~-~~~~~~p~gi 85 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV------------DFAYASPYWNKAFCENSTDAEK-RPLCGRTYDI 85 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE------------EEEESCTTCCHHHHTTCCCGGG-HHHHCCEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE------------EEecccccccccccccccchhc-cccCCCCceE
Confidence 34557889999887888777888888764332110 010000000 00 000 0011346889
Q ss_pred EEec-CCCEEEEEeCCeEEEEECCCceeEEEEe---C-CCCCeEEEEEeCCCCcEEEEEeC-----------------CC
Q 001184 840 ALSK-NDSYVMSAGGGKVSLFNMMNFKVMTTFM---S-PPPASTFLAFHPQDNNIIAIGME-----------------DS 897 (1130)
Q Consensus 840 ~~s~-dg~~la~~~dg~i~iwd~~~~~~~~~~~---~-~~~~i~~l~~sp~~~~~lasg~~-----------------dg 897 (1130)
++++ +|+++++...+.|..+|..+++...... + .......+++.+.++.+.++-.. ++
T Consensus 86 ~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g 165 (322)
T 2fp8_A 86 SYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTG 165 (322)
T ss_dssp EEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCE
T ss_pred EEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCc
Confidence 9997 6665555446668899987664322111 1 12346789998823455544322 36
Q ss_pred cEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEE-eCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCC
Q 001184 898 TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSS-GSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSD 976 (1130)
Q Consensus 898 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~-s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 976 (1130)
.|..||..+++....... ......|+++|||++|..+ +..+.|.+|++............. .+. ...+++.++
T Consensus 166 ~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~----~~g-P~gi~~d~~ 239 (322)
T 2fp8_A 166 RLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK----IPN-PGNIKRNAD 239 (322)
T ss_dssp EEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE----CSS-EEEEEECTT
T ss_pred eEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe----CCC-CCCeEECCC
Confidence 788888777764332222 2335679999999866655 556889999988632211111111 112 677899999
Q ss_pred CcEEEEEc-----------CCcEEEEECCCceeeeeeecCCCC-CCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 001184 977 QVRLLVNH-----------ETQLAIYDGSKMECIRQWVPQDVL-SSPISSAAYSCNSQLIYATFTDGSIGVFDADS 1040 (1130)
Q Consensus 977 ~~~l~~~~-----------d~~i~v~d~~~~~~~~~~~~~~~~-~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~ 1040 (1130)
|.+.++.. .+.|..+|.. ++.+..+....+. -..++++++ .++++.++....+.|.++++..
T Consensus 240 G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 240 GHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp SCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 98777743 3568888874 7777666544221 235667776 4666666666788899998763
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00011 Score=79.37 Aligned_cols=228 Identities=15% Similarity=0.089 Sum_probs=138.1
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEc-CCC-cEEEEe-cC
Q 001184 410 ISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG-DDK-LIRVWD-LS 486 (1130)
Q Consensus 410 ~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s-~d~-~v~iwd-~~ 486 (1130)
.....++|+++|+++++...++.|..||..++. ... + ........+++.++|+ ++++.. .++ .|..+| .+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~--~~~--~-~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIH--A-TVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEE--E-ECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce--EEE--E-eCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence 457789999999977777788999999987532 211 1 1234688999999998 444443 333 466677 56
Q ss_pred CCeeeEec-CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceee-e-------c--CCCccEEEEEEecCCCe
Q 001184 487 GRKLFQFE-GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD-Y-------D--APGLWCTTMLYSADGSR 555 (1130)
Q Consensus 487 ~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~-------~--~~~~~v~~~~~s~~~~~ 555 (1130)
++...... ........++.. .++..+++...++.|.++|......... . . ..-.....+ ++++++
T Consensus 105 g~~~~~~~~~~~~~~~g~~~~--~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITPL--SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEES--SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CeEEEEEeCCCccccCccccc--CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 65432222 112223444432 2334455544678888888764321111 0 0 111234555 888888
Q ss_pred EEEeeecCCCCcEEEEeeCCC-Cce--eEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCC
Q 001184 556 LFSCGTSKEGDSHLVEWNESE-GAL--KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGL 632 (1130)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 632 (1130)
|+++.. ..+.|+.++... ++. ...+... .....++++++|+.+++....+.|.+++.. ++...........
T Consensus 181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~ 254 (306)
T 2p4o_A 181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGV 254 (306)
T ss_dssp EEEEET---TTTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTC
T ss_pred EEEEeC---CCCEEEEEEeCCCCCCCccEEEecc--CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccccc
Confidence 777653 367899999864 332 1222111 134458899999877776677899999975 6553322222223
Q ss_pred CCcceEEEc---CCCCEEEEEeCCC
Q 001184 633 PSLPRLRFN---KEGNLLVVTTADQ 654 (1130)
Q Consensus 633 ~~i~~v~~s---~~~~~l~~~~~dg 654 (1130)
....+++|. |+++.|++++..+
T Consensus 255 ~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 255 IGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CCceEEEEecccCCCCEEEEECCCC
Confidence 357899998 8888887776543
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=6.4e-05 Score=82.02 Aligned_cols=255 Identities=9% Similarity=-0.006 Sum_probs=142.6
Q ss_pred CEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccc--ee-e---eeecCCCccEEEEEEcC-CC
Q 001184 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMM--LQ-A---AIVKDSSISVSRVAWSP-DG 421 (1130)
Q Consensus 349 ~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~-~---~~~~~h~~~V~~v~~sp-dg 421 (1130)
...+++|+|+|+ ++.++..++.|..||..+++... |........ .. . .........+..+++.+ +|
T Consensus 20 ~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g 92 (322)
T 2fp8_A 20 APNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVD------FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN 92 (322)
T ss_dssp CCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEE------EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred CceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEE------EecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence 456788999997 47778888999999987665431 100000000 00 0 00000113578999998 66
Q ss_pred CEEEEEeCCCeEEEEEecCCccceeeee-eec-CCCCeeEEEEec-CCCceEEEEEcC-----------------CCcEE
Q 001184 422 NFIGVAFTKHLIHLYTYQGSNDLCQSLE-IDA-HVGGVNDLAFSY-PNKQLCIVTCGD-----------------DKLIR 481 (1130)
Q Consensus 422 ~~las~~~d~~i~vwd~~~~~~~~~~~~-~~~-h~~~V~~i~~s~-d~~~l~l~s~s~-----------------d~~v~ 481 (1130)
+ |.++...+.|..+|..++.. ..... ..+ .......+++.+ +|+ +.++... ++.|.
T Consensus 93 ~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g~v~ 168 (322)
T 2fp8_A 93 Q-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSDKTGRLI 168 (322)
T ss_dssp E-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTCCCEEEE
T ss_pred c-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccCCCceEE
Confidence 5 44454445588888775532 21111 111 123478899999 887 4555332 36788
Q ss_pred EEecCCCeeeEecCCCcCEEEEeecccCCccEEEEE-ecCCcEEEEEccCCc--ceeeecCCCccEEEEEEecCCCeEEE
Q 001184 482 VWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFST-AVDGKIKAWLYDNVG--SRVDYDAPGLWCTTMLYSADGSRLFS 558 (1130)
Q Consensus 482 iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-s~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1130)
.||..+..+..+.........++++ +++..|+.+ +..+.|.+|++.... ....+..... ...+++.++|++.++
T Consensus 169 ~~d~~~~~~~~~~~~~~~p~gia~~--~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va 245 (322)
T 2fp8_A 169 KYDPSTKETTLLLKELHVPGGAEVS--ADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVS 245 (322)
T ss_dssp EEETTTTEEEEEEEEESCCCEEEEC--TTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEE
T ss_pred EEeCCCCEEEEeccCCccCcceEEC--CCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEE
Confidence 8884433333332222334567775 455655444 667899999987521 1111111122 788999999987666
Q ss_pred eeecC------CCCcEEEEeeCCCCceeEEEecccC---ceeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001184 559 CGTSK------EGDSHLVEWNESEGALKRTYIGFRK---KSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1130)
Q Consensus 559 ~~~~~------~~~~~i~~wd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 619 (1130)
..... ...+.|..+|. .++.+..+..... ..+..+++ .++..+++...++.|.++++..
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 246 SSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred ecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 53200 01357888986 4777777764321 23555555 3454444445677888888753
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.42 E-value=0.00019 Score=77.50 Aligned_cols=242 Identities=9% Similarity=0.030 Sum_probs=142.5
Q ss_pred cCCcccceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccE
Q 001184 333 LDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISV 412 (1130)
Q Consensus 333 ~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 412 (1130)
.+..+.+++..+........++|+|+|+ ++++-..++.|..||..++. .. .+ .....+
T Consensus 17 ~~~~~~~~~~~~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~~-~~-----~~---------------~~~~~p 74 (306)
T 2p4o_A 17 IELAPAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQ-QI-----HA---------------TVEGKV 74 (306)
T ss_dssp BCCCCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCE-EE-----EE---------------ECSSEE
T ss_pred CcCCCceEeEeCCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCCce-EE-----EE---------------eCCCCc
Confidence 3344566666666557889999999997 67776678999999987532 21 11 112368
Q ss_pred EEEEEcCCCCEEEEEeCCC--eEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecC-CC-
Q 001184 413 SRVAWSPDGNFIGVAFTKH--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS-GR- 488 (1130)
Q Consensus 413 ~~v~~spdg~~las~~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~-~~- 488 (1130)
..++++++|+++++..... .|..+|..+++. .....+. .......++..+++. .+++-..++.|.++|.. +.
T Consensus 75 ~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~-~~~~~~~-~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~ 150 (306)
T 2p4o_A 75 SGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV-ETLLTLP-DAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSG 150 (306)
T ss_dssp EEEEECTTSCEEEEEECTTSCEEEEEECTTSCE-EEEEECT-TCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEE
T ss_pred eeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE-EEEEeCC-CccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcE
Confidence 8999999999766654332 466677777653 2222221 222345555555554 55666668889999843 32
Q ss_pred eeeEec---------CCCcCEEEEeecccCCcc-EEEEEecCCcEEEEEccCCcc---eeeecCCCccEEEEEEecCCCe
Q 001184 489 KLFQFE---------GHEAPVYSVCPHQKENIH-FIFSTAVDGKIKAWLYDNVGS---RVDYDAPGLWCTTMLYSADGSR 555 (1130)
Q Consensus 489 ~~~~~~---------~h~~~v~~~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~ 555 (1130)
.+.... +.-...+.+ ++ ++. ++++-...++|..++++.... ...+. .......++++++|+.
T Consensus 151 ~v~~~~~~~~~~~~~~~~~~pngi--s~--dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l 225 (306)
T 2p4o_A 151 SIWLEHPMLARSNSESVFPAANGL--KR--FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNL 225 (306)
T ss_dssp EEEEECGGGSCSSTTCCSCSEEEE--EE--ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCE
T ss_pred eEEEECCccccccccCCCCcCCCc--Cc--CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCE
Confidence 121111 111233444 33 334 445556678999999875211 11111 0123456899999987
Q ss_pred EEEeeecCCCCcEEEEeeCCCCceeEEEeccc-CceeEEEEEc---CCCCEEEEEeCCC
Q 001184 556 LFSCGTSKEGDSHLVEWNESEGALKRTYIGFR-KKSAGVVQFD---TTRNRILAAGEDN 610 (1130)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~~---~~~~~l~~~~~dg 610 (1130)
+++... .+.|.++|.. ++......... .....+++|. ++++.|+.++..+
T Consensus 226 ~va~~~----~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 226 YGATHI----YNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EEECBT----TCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred EEEeCC----CCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 665542 6789999975 65533211111 1357788998 7888777766543
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00048 Score=70.53 Aligned_cols=200 Identities=10% Similarity=0.081 Sum_probs=128.8
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
-...+..++|+|+++.|+++...++.|...|.. ++.+...+ +.+ ....-.|++.+++.+++
T Consensus 25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~g~~~v 85 (255)
T 3qqz_A 25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGDNQFVI 85 (255)
T ss_dssp CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECSTTEEEE
T ss_pred cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCCCEEEE
Confidence 345799999999988778878889999999998 77665311 222 24577889999998777
Q ss_pred EEeCCCeEEEEEecCCccce--eeeee----ecCCCCeeEEEEecCCCceEEEEEcCCC--cEEEEe--cCCCeeeEec-
Q 001184 426 VAFTKHLIHLYTYQGSNDLC--QSLEI----DAHVGGVNDLAFSYPNKQLCIVTCGDDK--LIRVWD--LSGRKLFQFE- 494 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~--~~~~~----~~h~~~V~~i~~s~d~~~l~l~s~s~d~--~v~iwd--~~~~~~~~~~- 494 (1130)
+.-.++.+.++++.....+. ....+ ...+.....++|.|+++. |+++.... .|..|+ ..+..+..+.
T Consensus 86 s~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~--L~va~E~~p~~i~~~~g~~~~~~l~i~~~ 163 (255)
T 3qqz_A 86 SDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT--FWFFKEKNPIEVYKVNGLLSSNELHISKD 163 (255)
T ss_dssp EETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE--EEEEEESSSEEEEEEESTTCSSCCEEEEC
T ss_pred EECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCE--EEEEECcCCceEEEEcccccCCceeeecc
Confidence 76667889999887654322 11111 123456799999999985 33343333 455555 1222222221
Q ss_pred ------CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCC---------ccEEEEEEecCCCeEEEe
Q 001184 495 ------GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG---------LWCTTMLYSADGSRLFSC 559 (1130)
Q Consensus 495 ------~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~ 559 (1130)
.+...+.+++++|.. +.+++.....+.+.++|.... ....+.... .....|+|.++|+..++
T Consensus 164 ~~~~~~~~~~d~S~l~~dp~t-g~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv- 240 (255)
T 3qqz_A 164 KALQRQFTLDDVSGAEFNQQK-NTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV- 240 (255)
T ss_dssp HHHHHTCCSSCCCEEEEETTT-TEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-
T ss_pred hhhccccccCCceeEEEcCCC-CeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-
Confidence 133457888898754 467777777788888887644 333222221 25789999999986555
Q ss_pred eecCCCCcEEEEee
Q 001184 560 GTSKEGDSHLVEWN 573 (1130)
Q Consensus 560 ~~~~~~~~~i~~wd 573 (1130)
+. .+.++.+.
T Consensus 241 sE----~n~~y~f~ 250 (255)
T 3qqz_A 241 SE----PNRFYRFT 250 (255)
T ss_dssp ET----TTEEEEEE
T ss_pred cC----CceEEEEE
Confidence 32 45666664
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.0031 Score=68.47 Aligned_cols=278 Identities=10% Similarity=0.040 Sum_probs=148.8
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
....+.+|.|.+++. ++++| .+|.| +...+.|+. |..... ........+.+|+|++ ++.++
T Consensus 34 ~~~~~~~v~~~~~~~-~~~~G-~~g~i-~~s~DgG~t--------W~~~~~-------~~~~~~~~~~~i~~~~-~~~~~ 94 (327)
T 2xbg_A 34 TTATILDMSFIDRHH-GWLVG-VNATL-METRDGGQT--------WEPRTL-------VLDHSDYRFNSVSFQG-NEGWI 94 (327)
T ss_dssp CSSCEEEEEESSSSC-EEEEE-TTTEE-EEESSTTSS--------CEECCC-------CCSCCCCEEEEEEEET-TEEEE
T ss_pred CCCcEEEEEECCCCc-EEEEc-CCCeE-EEeCCCCCC--------CeECCC-------CCCCCCccEEEEEecC-CeEEE
Confidence 345799999988876 46654 56654 334444431 111000 0112344688999986 44444
Q ss_pred EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEE-EEecCCC-eeeEecCCCcCEEEE
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR-VWDLSGR-KLFQFEGHEAPVYSV 503 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~-iwd~~~~-~~~~~~~h~~~v~~~ 503 (1130)
++.++.|.. ..+.|+.-........+.+.+..+.+.+++. +++.+. ++.|. -.| .|+ -.....++...+..+
T Consensus 95 -~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~-~g~v~~S~D-gG~tW~~~~~~~~~~~~~~ 168 (327)
T 2xbg_A 95 -VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMITN-VGAIYRTKD-SGKNWQALVQEAIGVMRNL 168 (327)
T ss_dssp -EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEET-TCCEEEESS-TTSSEEEEECSCCCCEEEE
T ss_pred -EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEeC-CccEEEEcC-CCCCCEEeecCCCcceEEE
Confidence 455664433 3344544332211112345678888887776 555554 55443 333 232 222333556678888
Q ss_pred eecccCCccEEEEEecCCcEEE-EEccCCcceee-ecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeE
Q 001184 504 CPHQKENIHFIFSTAVDGKIKA-WLYDNVGSRVD-YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKR 581 (1130)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~v-wd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1130)
.+.+ ++.+++.+ .+|.+.. +|-. +..-.. -......+..+.+.++++.++++. ++.+++.+...++...
T Consensus 169 ~~~~--~~~~~~~g-~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~ 239 (327)
T 2xbg_A 169 NRSP--SGEYVAVS-SRGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWG 239 (327)
T ss_dssp EECT--TSCEEEEE-TTSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEEC
T ss_pred EEcC--CCcEEEEE-CCCcEEEEeCCC-CCceeECCCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeE
Confidence 8765 44555554 4454433 3320 111111 122345688899999988776553 5677766422233222
Q ss_pred EEecc---cCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEecc-CCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 001184 582 TYIGF---RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE-GGLPSLPRLRFNKEGNLLVVTTADQGIK 657 (1130)
Q Consensus 582 ~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~i~~v~~s~~~~~l~~~~~dg~i~ 657 (1130)
.+... ....+..+.+.+++..++++ .+|.| .+..+.|+.-..+... .....+.++.|.+++. +++++.+|.|.
T Consensus 240 ~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~ 316 (327)
T 2xbg_A 240 ELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILL 316 (327)
T ss_dssp CCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEE
T ss_pred eccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEE
Confidence 22211 11246778888876655554 56777 4556666655555422 1123578898875554 66677888776
Q ss_pred EEE
Q 001184 658 ILA 660 (1130)
Q Consensus 658 iw~ 660 (1130)
-++
T Consensus 317 ~~~ 319 (327)
T 2xbg_A 317 RYV 319 (327)
T ss_dssp EEC
T ss_pred EEc
Confidence 654
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.0012 Score=72.47 Aligned_cols=248 Identities=13% Similarity=0.025 Sum_probs=151.3
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 426 (1130)
.+..+|.+..++. .++++ ....|+..++....... +..+ ...+..++|++.+..|..
T Consensus 33 ~d~~~C~~~~~~~-~ll~~--~~~~I~~i~~~g~~~~~-------------------~~~~-~~~~~~l~~d~~~~~ly~ 89 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTL-------------------LLNN-LENAIALDFHHRRELVFW 89 (349)
T ss_dssp TTSSCEEESSSCC-EEEEE--CBSCEEEECTTSCCEEE-------------------EECS-CSCEEEEEEETTTTEEEE
T ss_pred CCCCcccccccCc-eeEee--cccceEEEeCCCCeeEE-------------------eecC-CCceEEEEEeccccEEEE
Confidence 3455676666644 34443 34568888887554322 1222 335889999986665554
Q ss_pred E-eCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEec-CCCcCEEEEe
Q 001184 427 A-FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE-GHEAPVYSVC 504 (1130)
Q Consensus 427 ~-~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~-~h~~~v~~~~ 504 (1130)
. ...+.|..+++.++.... .+.........+++.+.+.. +.++-...+.|.+.+.+|.....+. ........++
T Consensus 90 ~D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~ia 165 (349)
T 3v64_C 90 SDVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIA 165 (349)
T ss_dssp EETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEE
T ss_pred EeccCCceEEEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEE
Confidence 4 467889999988754221 12222345678999986664 5566666789999997666544443 3345678888
Q ss_pred ecccCCccEEEEEecC-CcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEE
Q 001184 505 PHQKENIHFIFSTAVD-GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1130)
Q Consensus 505 ~~~~~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1130)
+.|.. +.++++-... +.|...+++...........-.....++++|++..|+.+-. ..+.|..+|.........+
T Consensus 166 vdp~~-g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~ 241 (349)
T 3v64_C 166 LHPME-GTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVI 241 (349)
T ss_dssp EETTT-TEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEE
T ss_pred EecCc-CeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEE
Confidence 87533 3455555555 78888887754443333333446889999998888877643 3678999997643333233
Q ss_pred ecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEe
Q 001184 584 IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTE 627 (1130)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 627 (1130)
... ......+++. .+..+++-...+.|..++..+|+....+.
T Consensus 242 ~~~-~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 242 SQG-LPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp CSS-CSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred eCC-CCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 222 2234456663 34444444456778888766666555554
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00075 Score=75.25 Aligned_cols=246 Identities=13% Similarity=0.027 Sum_probs=151.0
Q ss_pred CEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE-EE
Q 001184 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG-VA 427 (1130)
Q Consensus 349 ~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la-s~ 427 (1130)
.-.|.+..+.+ +++++ ....|+..++.++.... +. .....+..++|++.+..|. +-
T Consensus 78 ~~~C~~~~~~~-~l~~~--~~~~I~~i~~~~~~~~~-------------------~~-~~~~~~~gl~~d~~~~~ly~~D 134 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTL-------------------LL-NNLENAIALDFHHRRELVFWSD 134 (386)
T ss_dssp SSCEEECSSCC-EEEEE--CBSCEEEECTTSCCCEE-------------------EE-CSCSCEEEEEEETTTTEEEEEE
T ss_pred CCeECCccccc-eeEee--cCccceeeccCCCcEEE-------------------Ee-cCCCccEEEEEecCCCeEEEEe
Confidence 34466655643 34443 34578888887654332 12 2234588999998665555 44
Q ss_pred eCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEec-CCCcCEEEEeec
Q 001184 428 FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE-GHEAPVYSVCPH 506 (1130)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~-~h~~~v~~~~~~ 506 (1130)
...+.|..++..++.... .+.........+++.+.+.. ++++-...+.|.+.+..|.....+. ........+++.
T Consensus 135 ~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavd 210 (386)
T 3v65_B 135 VTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALH 210 (386)
T ss_dssp TTTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEE
T ss_pred CCCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEE
Confidence 566889999988754211 12222334678899986664 4566666788999996666544443 333567888886
Q ss_pred ccCCccEEEEEecC-CcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEec
Q 001184 507 QKENIHFIFSTAVD-GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG 585 (1130)
Q Consensus 507 ~~~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1130)
|.. +.+.++-... +.|..++++...........-.....++++|++..|+.+-. ..+.|..+|.........+..
T Consensus 211 p~~-g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~ 286 (386)
T 3v65_B 211 PME-GTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQ 286 (386)
T ss_dssp TTT-TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEECS
T ss_pred cCC-CeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEEC
Confidence 533 3444454444 67888887765444444444456889999998888877643 367899999764433333322
Q ss_pred ccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEe
Q 001184 586 FRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTE 627 (1130)
Q Consensus 586 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 627 (1130)
. ......+++. .+..+++-...+.|..++..+++....+.
T Consensus 287 ~-~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 287 G-LPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp S-CSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred C-CCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 2 2234556663 34455555567788888877776666654
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.23 E-value=0.036 Score=70.29 Aligned_cols=605 Identities=9% Similarity=0.039 Sum_probs=303.0
Q ss_pred ceeeeccCCCCEEEEEEecCC----CeEEEEEe--CcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccE
Q 001184 339 AVACTMHQGSSVVSMDFHPFH----HTLLVVGC--GDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISV 412 (1130)
Q Consensus 339 ~~~~~~~h~~~V~~v~fspdg----~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 412 (1130)
.++..+..-++|..++..... ..++++++ .+|.+++..-.-+-.... ..-+.+ -..+
T Consensus 366 ~~~~~~~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr~Gi~~~~~~----------------~~~l~g-v~~i 428 (1158)
T 3ei3_A 366 VAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHA----------------SIDLPG-IKGL 428 (1158)
T ss_dssp EEEEEECCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEEEESBCEEEEE----------------EECCCS-CCEE
T ss_pred EeEeeecCcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEEecCCCEEEEE----------------eecCCC-ccEE
Confidence 345556677899998886532 24454443 467888875432211110 001121 2345
Q ss_pred EEEEEc---CCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEe--cCCCceEEEEEcCCCcEEEEe-cC
Q 001184 413 SRVAWS---PDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFS--YPNKQLCIVTCGDDKLIRVWD-LS 486 (1130)
Q Consensus 413 ~~v~~s---pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s--~d~~~l~l~s~s~d~~v~iwd-~~ 486 (1130)
+.+... ....||+.+..+.+ .|+.+... .+... ...+-......++.. .++ .++=.. .+.|++.+ ..
T Consensus 429 Wtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e-~veev-~~~gf~~~~~TL~~~~l~~~---~ivQVt-~~~Irli~~~~ 501 (1158)
T 3ei3_A 429 WPLRSDPNRETDDTLVLSFVGQT-RVLMLNGE-EVEET-ELMGFVDDQQTFFCGNVAHQ---QLIQIT-SASVRLVSQEP 501 (1158)
T ss_dssp EEECCCSSCSSCCEEEEEETTEE-EEEEEETT-EEEEE-CCTTCCSSSCEEEEEEETTT---EEEEEE-SSCEEEEESSS
T ss_pred EEEeecCCCCCCCEEEEECCCCe-EEEEEeCC-ccccc-ccccccCCCCcEEEEEcCCC---eEEEEe-cCEEEEEECCC
Confidence 555443 23568887777666 56666432 22211 111111111111111 122 122222 23566777 44
Q ss_pred CCeeeEecCC-CcCEEEEeecccCCccEEEEEecCCcEEEEEccCCccee-eecCCCccEEEEEEecC------CCeEEE
Q 001184 487 GRKLFQFEGH-EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV-DYDAPGLWCTTMLYSAD------GSRLFS 558 (1130)
Q Consensus 487 ~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~~------~~~l~~ 558 (1130)
+..+..+... ...|...+.+ + ..++.++ .+.+.++.++.++... ....-...|.|+++.|. ++++++
T Consensus 502 ~~~~~~w~~p~~~~I~~As~n---~-~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aV 576 (1158)
T 3ei3_A 502 KALVSEWKEPQAKNISVASCN---S-SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAI 576 (1158)
T ss_dssp CCEEEEECCTTCCCCCEEEEC---S-SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEE
T ss_pred CeEEEEEECCCCCEEEEEEeC---C-CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEE
Confidence 4556566533 3356666542 2 3455554 6778888776543211 11112446999998863 357777
Q ss_pred eeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEc--CCCCEEEEEeCCCcEEEEeC--CCCceeEEEeccCCCCC
Q 001184 559 CGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFD--TTRNRILAAGEDNQIKFWDM--DNVNMLTSTEAEGGLPS 634 (1130)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~vwd~--~~~~~~~~~~~~~~~~~ 634 (1130)
+.. .+++++++++.+.+.+....-.......++.+. ....++..|-.||.+.-+.+ .+|+....-...-+..+
T Consensus 577 g~~---~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~p 653 (1158)
T 3ei3_A 577 GLW---TDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQP 653 (1158)
T ss_dssp EET---TTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSC
T ss_pred EEC---CCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCc
Confidence 763 378999999987665544332111122233222 23357888999998765544 45555433211112224
Q ss_pred cceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCC
Q 001184 635 LPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARP 714 (1130)
Q Consensus 635 i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~ 714 (1130)
+.-..+...+..-+.+..+....++..... +. +.. +.......+..|+..
T Consensus 654 v~L~~~~~~~~~~V~a~s~rp~liy~~~~~---l~-~s~-----------l~~~~v~~~~~F~se--------------- 703 (1158)
T 3ei3_A 654 TVLRTFRSLSTTNVFACSDRPTVIYSSNHK---LV-FSN-----------VNLKEVNYMCPLNSD--------------- 703 (1158)
T ss_dssp CEEEEEESSSCEEEEEESSSCEEEEESSSS---EE-EEE-----------BSSSCCCEEEEECCS---------------
T ss_pred eEEEEEeeCCceeEEEECCCCEEEEEcCCc---eE-Eec-----------cChHHhceEeccCcc---------------
Confidence 444444444443334444555555543221 00 000 000000011112111
Q ss_pred cccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEee
Q 001184 715 STILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLW 794 (1130)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw 794 (1130)
.. .+.++ ...++.+++..++... ......+|- ...+..++++|+.+.++++..+... +
T Consensus 704 ----------~~--~~g~v-~~~~~~LrI~~i~~~~---~~~~~~ipL----~~Tprri~y~~~~~~~~v~~~~~~~--~ 761 (1158)
T 3ei3_A 704 ----------GY--PDSLA-LANNSTLTIGTIDEIQ---KLHIRTVPL----YESPRKICYQEVSQCFGVLSSRIEV--Q 761 (1158)
T ss_dssp ----------SS--TTEEE-EECSSCEEEEEECCSS---SEEEEEEEC----SSEEEEEEEEGGGTEEEEEEEEEEE--E
T ss_pred ----------cC--CCcEE-EEcCCceEEEEecccC---CeeEEEEeC----CCCceEEEEcCCCCEEEEEEEeccc--c
Confidence 00 11122 2223557777765431 222222332 3577899999998877766543221 1
Q ss_pred ecCCC-----------------------------CCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEE---e
Q 001184 795 KWNRT-----------------------------EQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVAL---S 842 (1130)
Q Consensus 795 ~~~~~-----------------------------~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~---s 842 (1130)
+.... ....-+.......+++.|+.+.+.+..... .....+.+++. .
T Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l-~~nE~~~sv~~v~~~ 840 (1158)
T 3ei3_A 762 DTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQF-LQNEYALSLVSCKLG 840 (1158)
T ss_dssp CSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEEC-CTTEEEEEEEEECCT
T ss_pred ccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeC-CCCcceEEEEEEEEc
Confidence 11000 000001111233566777776664432211 23445555554 2
Q ss_pred c-CCCEEEEEe-----------CCeEEEEECCCceeEEEEe-CCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeE
Q 001184 843 K-NDSYVMSAG-----------GGKVSLFNMMNFKVMTTFM-SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV 909 (1130)
Q Consensus 843 ~-dg~~la~~~-----------dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 909 (1130)
. ...++++|. .|.|.+|++..++.....+ ...+.+++++--. |++||.. ...|++|++...+.
T Consensus 841 ~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~--g~Lla~i--g~~l~vy~l~~~~~ 916 (1158)
T 3ei3_A 841 KDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFN--GKLLASI--NSTVRLYEWTTEKE 916 (1158)
T ss_dssp TCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEET--TEEEEEE--TTEEEEEEECTTSC
T ss_pred cCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeC--CEEEEEc--CCEEEEEECCCCce
Confidence 2 246888774 2669999987554332222 2357788887654 5555433 57899999987654
Q ss_pred EE-EEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcE
Q 001184 910 KT-KLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQL 988 (1130)
Q Consensus 910 ~~-~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i 988 (1130)
+. ... +-..|..+.....+++++.|+.-..|.+...+... ...........+..++++.|-.++.++++..++.+
T Consensus 917 L~~~~~-~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~---~~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl 992 (1158)
T 3ei3_A 917 LRTECN-HYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPME---GNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNL 992 (1158)
T ss_dssp EEEEEE-ECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTT---TEEEEEEECCSCBCEEEEEEEETTEEEEEETTSEE
T ss_pred EEEEee-ccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCC---CeEEEEEeecccccEEEEEEEccCcEEEEcCCCcE
Confidence 33 222 22224433443457899999988888776654322 12222233344578899999888877777788888
Q ss_pred EEEECCCc-------eeeeeeecCCCCCCCeEEEE---ECCC---------CCEEEEEeCCCcEEEEe
Q 001184 989 AIYDGSKM-------ECIRQWVPQDVLSSPISSAA---YSCN---------SQLIYATFTDGSIGVFD 1037 (1130)
Q Consensus 989 ~v~d~~~~-------~~~~~~~~~~~~~~~v~~v~---~s~d---------g~~l~t~~~Dg~i~vwd 1037 (1130)
.++..... ..+... .+-.....|+++. +.+. ...++.++.+|.|.+.-
T Consensus 993 ~vl~~~~~~~~~~~~~~L~~~-~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~ 1059 (1158)
T 3ei3_A 993 FVCQKDSAATTDEERQHLQEV-GLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVT 1059 (1158)
T ss_dssp EEEEECTTCCSTTGGGBEEEE-EEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEE
T ss_pred EEEecCCCCCCccccceeeeE-EEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEE
Confidence 88865431 111111 1111145777776 3332 23577788899988873
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=0.001 Score=71.81 Aligned_cols=207 Identities=9% Similarity=-0.069 Sum_probs=130.6
Q ss_pred CCceeEEEEecCCCEEEEEe--CCeEEEEECCC----ceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeec
Q 001184 833 EDVVPCVALSKNDSYVMSAG--GGKVSLFNMMN----FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV 906 (1130)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 906 (1130)
......++|++++..|..+. .+.|..+++.+ ......+.........+++.+.++.+.++-..++.|.++++..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 34578899998877776665 58899999876 2222233333345678999874556666666778999999875
Q ss_pred CeEEEEEecCCCCeeEEEEccCCCeEEEEeCC--CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-
Q 001184 907 DEVKTKLKGHQKHITGLAFSTNLNILVSSGSD--AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN- 983 (1130)
Q Consensus 907 ~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~- 983 (1130)
......+........++++.|++.+|+.+... +.|...+++.... .. +... .-.....+++++++..|..+
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-~~--~~~~---~~~~P~gla~d~~~~~lY~~D 182 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YS--LVTE---NIQWPNGITLDLLSGRLYWVD 182 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EE--EECS---SCSCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe-EE--EEEC---CCCCceEEEEeccCCEEEEEE
Confidence 54433344344567899999977776666543 6788888765221 11 1111 11456789999988777764
Q ss_pred -cCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCccccccc
Q 001184 984 -HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRI 1047 (1130)
Q Consensus 984 -~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~ 1047 (1130)
..+.|..+|... .....+............+++. ++.++++-...+.|..++..+|+....+
T Consensus 183 ~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 183 SKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp TTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred CCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 467899999874 3333332211112345678875 3555555556788999998777755444
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00092 Score=68.43 Aligned_cols=205 Identities=12% Similarity=0.074 Sum_probs=131.7
Q ss_pred CCCCceeEEEEecCCCEEEEEe--CCeEEEEECCCceeEEEEeC-CCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecC
Q 001184 831 NAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMS-PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD 907 (1130)
Q Consensus 831 ~~~~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 907 (1130)
+-...+..++++|++..|.+.. ++.|...|.. ++.++.+.. .....-.+++.+ ++.++++.-.++.+.++++...
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~ 101 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISLTPN 101 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEECTT
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcCCC
Confidence 3455799999999877666544 6789999998 888887753 235678889988 7777666667788999998754
Q ss_pred eE---EEEEe------cCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCC---CcccceeeEe-ccCCCCCCCeEEEEEc
Q 001184 908 EV---KTKLK------GHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDT---WEKRKSIAIQ-LPAGKLPVGETRVQFH 974 (1130)
Q Consensus 908 ~~---~~~l~------~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~---~~~~~~~~~~-~~~~~~~~~v~~~~~s 974 (1130)
.. +.... .+.....+|+|+|+++.|.++.......+|.++. .......... ......-.....++++
T Consensus 102 ~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~d 181 (255)
T 3qqz_A 102 SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFN 181 (255)
T ss_dssp CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEE
T ss_pred CeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEc
Confidence 32 22222 1234468999999998888877766666666652 1101110000 0001112457899999
Q ss_pred CCCcEEEE-E-cCCcEEEEECCCceeeeeeecCCCC------CCCeEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 001184 975 SDQVRLLV-N-HETQLAIYDGSKMECIRQWVPQDVL------SSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039 (1130)
Q Consensus 975 ~d~~~l~~-~-~d~~i~v~d~~~~~~~~~~~~~~~~------~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~ 1039 (1130)
|....|.+ + ..+.+.++|.. |+.+..+....+. -..-..|+|.++|+ |+..++.+.++++.-.
T Consensus 182 p~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 182 QQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp TTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC-
T ss_pred CCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEec
Confidence 97655554 5 46778888866 5555555443211 12568999999998 4445777777777543
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.15 E-value=0.0015 Score=71.64 Aligned_cols=211 Identities=9% Similarity=-0.051 Sum_probs=133.7
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
.....+..++|++.+..++.+-...+.|..+++.++.... +..........+++.+.+..|
T Consensus 70 ~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-------------------~~~~~~~~p~glavd~~~g~l 130 (349)
T 3v64_C 70 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-------------------VVSTGLESPGGLAVDWVHDKL 130 (349)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------------------EECSSCSCCCEEEEETTTTEE
T ss_pred cCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE-------------------EEeCCCCCccEEEEecCCCeE
Confidence 3445689999998777677776677899999988664322 111222345789999865554
Q ss_pred -EEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCC-CcEEEEecCCCeeeEecC-CCcCEE
Q 001184 425 -GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD-KLIRVWDLSGRKLFQFEG-HEAPVY 501 (1130)
Q Consensus 425 -as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d-~~v~iwd~~~~~~~~~~~-h~~~v~ 501 (1130)
.+-...+.|.+.++.+... .. .+.........+++.|.+.. ++++-... +.|...+.+|.....+.. .-...+
T Consensus 131 y~~d~~~~~I~~~~~dG~~~-~~--l~~~~l~~P~~iavdp~~g~-ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~Pn 206 (349)
T 3v64_C 131 YWTDSGTSRIEVANLDGAHR-KV--LLWQSLEKPRAIALHPMEGT-IYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPN 206 (349)
T ss_dssp EEEETTTTEEEEEETTSCSC-EE--EECTTCSCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEESCCSSCSCEE
T ss_pred EEEcCCCCeEEEEcCCCCce-EE--EEeCCCCCcceEEEecCcCe-EEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcc
Confidence 4555567899999876432 11 12333456789999997764 44454444 788888877766555532 234567
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeE
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKR 581 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1130)
.+++++.. +.+.++-...+.|..++++.......+.........+++. . ..++.+.. +.+.|..++..+|+...
T Consensus 207 Gla~d~~~-~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~-~~ly~td~---~~~~V~~~~~~~G~~~~ 280 (349)
T 3v64_C 207 GLTIDYAG-RRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-E-DSLYWTDW---HTKSINSANKFTGKNQE 280 (349)
T ss_dssp EEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-T-TEEEEEET---TTTEEEEEETTTCCSCE
T ss_pred eEEEeCCC-CEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-C-CEEEEecC---CCCeEEEEEccCCCccE
Confidence 88886533 3455555667889999987654444343334456778873 3 34444432 26778888766676655
Q ss_pred EEe
Q 001184 582 TYI 584 (1130)
Q Consensus 582 ~~~ 584 (1130)
.+.
T Consensus 281 ~i~ 283 (349)
T 3v64_C 281 IIR 283 (349)
T ss_dssp EEE
T ss_pred Eec
Confidence 554
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=0.0073 Score=65.12 Aligned_cols=230 Identities=11% Similarity=-0.004 Sum_probs=139.5
Q ss_pred cCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEE-eCCCeEEEEEecCC---ccc
Q 001184 369 DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA-FTKHLIHLYTYQGS---NDL 444 (1130)
Q Consensus 369 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~-~~d~~i~vwd~~~~---~~~ 444 (1130)
...|+..|+.+++... +. .....+..++|++++..|..+ ..++.|..+++.+. ...
T Consensus 9 ~~~I~~i~~~~~~~~~-------------------~~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~ 68 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTS-------------------LI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY 68 (316)
T ss_dssp BSSEEEEETTSCCCEE-------------------EE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C
T ss_pred CCeEEEEECCCcceEe-------------------hh-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCccc
Confidence 4579999998765432 11 223467899999976655544 45689999998761 212
Q ss_pred eeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEec-CCCcCEEEEeecccCCccEEEEEecC-Cc
Q 001184 445 CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE-GHEAPVYSVCPHQKENIHFIFSTAVD-GK 522 (1130)
Q Consensus 445 ~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d-g~ 522 (1130)
.. .+.........+++.+.+.. +.++-...+.|.+.|..|.....+. ........+++.|.. +.++++.... +.
T Consensus 69 ~~--~~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~-g~ly~~d~~~~~~ 144 (316)
T 1ijq_A 69 DT--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAK 144 (316)
T ss_dssp EE--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCE
T ss_pred EE--EEeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCC-CEEEEEccCCCCe
Confidence 21 12222345689999976654 4566667889999997676554443 234567888886533 3344444333 67
Q ss_pred EEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecc--cCceeEEEEEcCCC
Q 001184 523 IKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGF--RKKSAGVVQFDTTR 600 (1130)
Q Consensus 523 i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~--~~~~v~~~~~~~~~ 600 (1130)
|...+++...........-.....+++++++..|+.+-. ..+.|..+|.... ..+.+... .......+++. .+
T Consensus 145 I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~---~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~-~~ 219 (316)
T 1ijq_A 145 IKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF-ED 219 (316)
T ss_dssp EEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE-TT
T ss_pred EEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEEC---CCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEE-CC
Confidence 888887654433333333456889999998888877643 3678999998643 33333211 11123456664 34
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeEEEe
Q 001184 601 NRILAAGEDNQIKFWDMDNVNMLTSTE 627 (1130)
Q Consensus 601 ~~l~~~~~dg~i~vwd~~~~~~~~~~~ 627 (1130)
..+++-...+.|..++..+++.+..+.
T Consensus 220 ~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 220 KVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 444555566788888887776555543
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.0071 Score=65.57 Aligned_cols=195 Identities=12% Similarity=0.078 Sum_probs=114.6
Q ss_pred CceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEE-EeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEE-EEe--ecCeE
Q 001184 834 DVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTT-FMSPPPASTFLAFHPQDNNIIAIGMEDSTIQI-YNV--RVDEV 909 (1130)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~i-wd~--~~~~~ 909 (1130)
..+..+++.+++..++++.+|.|..- ...++.-.. .......+..+++.+ ++.+++++. +|.++. +|- .+.+.
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG~tW~~ 198 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQTAWEP 198 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTTCSSCEE
T ss_pred CCeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCCCCceeE
Confidence 34677888788887777766654321 222322222 234456788999999 778877664 454443 331 23333
Q ss_pred EEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEE
Q 001184 910 KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLA 989 (1130)
Q Consensus 910 ~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~ 989 (1130)
+. ......+..+++.+++..+ .++.+|.+++++.+.++.-.. ...+.......+..+++.+++.+++++.++.+
T Consensus 199 ~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~--~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i- 272 (327)
T 2xbg_A 199 HN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGE--LLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL- 272 (327)
T ss_dssp EE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECC--CBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-
T ss_pred CC--CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEe--ccCCcccCCcceEEEEecCCCEEEEEeCCCeE-
Confidence 32 2345678999999988655 456678887775332211000 11110011135788999999998888888877
Q ss_pred EEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeC
Q 001184 990 IYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDA 1038 (1130)
Q Consensus 990 v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~ 1038 (1130)
.+..+.|+.-..+.........+.++.|.++++ +++++.+|.|.-++-
T Consensus 273 ~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 273 LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 445555554443332211235678899986655 555667998877763
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00099 Score=74.25 Aligned_cols=212 Identities=9% Similarity=-0.049 Sum_probs=133.7
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
.....+..++|++.+.+++.+-...+.|..++..++.... +..........+++.+.+..|
T Consensus 113 ~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-------------------~~~~~~~~p~glavd~~~g~l 173 (386)
T 3v65_B 113 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-------------------VVSTGLESPGGLAVDWVHDKL 173 (386)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE-------------------EECSSCSCCCCEEEETTTTEE
T ss_pred cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE-------------------EEeCCCCCccEEEEEeCCCeE
Confidence 3445789999998777677776677899999988665322 111222345678999865554
Q ss_pred -EEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCC-CcEEEEecCCCeeeEec-CCCcCEE
Q 001184 425 -GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD-KLIRVWDLSGRKLFQFE-GHEAPVY 501 (1130)
Q Consensus 425 -as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d-~~v~iwd~~~~~~~~~~-~h~~~v~ 501 (1130)
++-...+.|.+.++.+..... .+.........+++.|.+.. ++++-... +.|...+..|.....+. ..-...+
T Consensus 174 Y~~d~~~~~I~~~~~dg~~~~~---l~~~~l~~P~giavdp~~g~-ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~Pn 249 (386)
T 3v65_B 174 YWTDSGTSRIEVANLDGAHRKV---LLWQSLEKPRAIALHPMEGT-IYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPN 249 (386)
T ss_dssp EEEETTTTEEEECBTTSCSCEE---EECSSCSCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEEEECSSCSCEE
T ss_pred EEEcCCCCeEEEEeCCCCceEE---eecCCCCCCcEEEEEcCCCe-EEEeccCCCCEEEEEeCCCCCcEEEEECCCCCee
Confidence 444556788888887643211 22333456789999998775 34444444 77888887776555543 2334567
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeE
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKR 581 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1130)
.+++++.. +.+.++-+..+.|..+|++.......+.........+++. .+ .++.+.. +.+.|..++..+++...
T Consensus 250 Glavd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~-~ly~td~---~~~~V~~~~~~~G~~~~ 323 (386)
T 3v65_B 250 GLTIDYAG-RRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-ED-SLYWTDW---HTKSINSANKFTGKNQE 323 (386)
T ss_dssp EEEEEGGG-TEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TT-EEEEEET---TTTEEEEEETTTCCSCE
T ss_pred eEEEeCCC-CEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CC-EEEEeeC---CCCeEEEEECCCCcceE
Confidence 88887543 3455555667889999987654444443334456778873 33 4444432 36778888866776666
Q ss_pred EEec
Q 001184 582 TYIG 585 (1130)
Q Consensus 582 ~~~~ 585 (1130)
.+..
T Consensus 324 ~i~~ 327 (386)
T 3v65_B 324 IIRN 327 (386)
T ss_dssp EEEC
T ss_pred EEcc
Confidence 6553
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0022 Score=71.73 Aligned_cols=232 Identities=8% Similarity=-0.010 Sum_probs=143.9
Q ss_pred CEEEEEeCCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecC----eEEEEEecCCCCee
Q 001184 846 SYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD----EVKTKLKGHQKHIT 921 (1130)
Q Consensus 846 ~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~----~~~~~l~~h~~~V~ 921 (1130)
.+|+.+....|+..++.+........ ....+..++|++.++.+..+-...+.|+.+++... .....+........
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp CEEEEEETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred ceeEEeccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 46666677889999998766554443 45678899999855555555556788999988752 22333333445678
Q ss_pred EEEEccCCCeEE-EEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEc---CCcEEEEECCCce
Q 001184 922 GLAFSTNLNILV-SSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH---ETQLAIYDGSKME 997 (1130)
Q Consensus 922 ~l~~s~dg~~L~-s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~---d~~i~v~d~~~~~ 997 (1130)
+|++.+.+..|+ +-...+.|.+.+++....... .. . .......+++.|.+.+|+.+. .+.|...++....
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l--~~-~---~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~ 236 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL--FR-E---NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 236 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEE--EE-C---SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEE--Ee-C---CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc
Confidence 999988555554 445577898988876432111 11 1 114568899999777766643 4678888887433
Q ss_pred eeeeeecCCCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCC
Q 001184 998 CIRQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPN 1076 (1130)
Q Consensus 998 ~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1076 (1130)
........ -.....++++++++.|+.+. ..+.|..+|++.......+.... .-..+..++.. ++.
T Consensus 237 ~~~~~~~~---l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~---------~l~~P~gl~v~--~~~ 302 (400)
T 3p5b_L 237 IYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK---------RLAHPFSLAVF--EDK 302 (400)
T ss_dssp CEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSS---------TTSSEEEEEEE--TTE
T ss_pred cEEEEECC---CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCC---------CCCCCEEEEEe--CCE
Confidence 32222221 24678999999888777665 45789999987544322221100 01112234332 356
Q ss_pred EEEEEeCCCcEEEEeCCCCccC
Q 001184 1077 QLAVGLTDGSVKVIEPSETERK 1098 (1130)
Q Consensus 1077 ~l~s~~~Dg~v~vW~~~~~~~~ 1098 (1130)
++++-...+.|..++..+++..
T Consensus 303 lywtd~~~~~V~~~~~~~G~~~ 324 (400)
T 3p5b_L 303 VFWTDIINEAIFSANRLTGSDV 324 (400)
T ss_dssp EEEEESSSCSEEEEESSSCCCC
T ss_pred EEEecCCCCeEEEEEcCCCCce
Confidence 7777777788999987666544
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00032 Score=84.78 Aligned_cols=234 Identities=10% Similarity=-0.030 Sum_probs=126.9
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------eEEEEEecCCccceeeeeee-cCCCCeeEEEEecCCCceEEEEEc-CCCc
Q 001184 414 RVAWSP-DGNFIGVAFTKH-----------LIHLYTYQGSNDLCQSLEID-AHVGGVNDLAFSYPNKQLCIVTCG-DDKL 479 (1130)
Q Consensus 414 ~v~~sp-dg~~las~~~d~-----------~i~vwd~~~~~~~~~~~~~~-~h~~~V~~i~~s~d~~~l~l~s~s-~d~~ 479 (1130)
++++.| +|+.++.|+.+. .+.+||..+++-.. ...+. .+.....++++..+++ +++.|+ .+..
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~-~~~~~~~~~~~~~~~~~~~~g~--lyv~GG~~~~~ 266 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD-RTVTVTKHDMFCPGISMDGNGQ--IVVTGGNDAKK 266 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC-CEEEECSCCCSSCEEEECTTSC--EEEECSSSTTC
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEe-CcccCCCCCCccccccCCCCCC--EEEeCCCCCCc
Confidence 566777 899999987643 58899998876332 22222 2333445678888998 778877 4568
Q ss_pred EEEEe-cCCCeeeEecCCCcCE-EEEeecccCCccEEEEEe-cC-----CcEEEEEccCCcceeeecCCC-ccE----EE
Q 001184 480 IRVWD-LSGRKLFQFEGHEAPV-YSVCPHQKENIHFIFSTA-VD-----GKIKAWLYDNVGSRVDYDAPG-LWC----TT 546 (1130)
Q Consensus 480 v~iwd-~~~~~~~~~~~h~~~v-~~~~~~~~~~~~~l~s~s-~d-----g~i~vwd~~~~~~~~~~~~~~-~~v----~~ 546 (1130)
+.+|| .+++....-..+..+- .++++ .+++++++.|+ .+ ..+.+||..+..-... .... .+. ..
T Consensus 267 v~~yd~~t~~W~~~~~~~~~R~~~s~~~--~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~-~~~~~~p~~~~~~~ 343 (656)
T 1k3i_A 267 TSLYDSSSDSWIPGPDMQVARGYQSSAT--MSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL-PNAKVNPMLTADKQ 343 (656)
T ss_dssp EEEEEGGGTEEEECCCCSSCCSSCEEEE--CTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE-TTSCSGGGCCCCTT
T ss_pred eEEecCcCCceeECCCCCccccccceEE--ecCCeEEEEeCcccCCcccccceEeCCCCCcceeC-CCcccccccccccc
Confidence 99999 5554332211111111 12222 23567888888 34 4688999876442221 0000 000 00
Q ss_pred EEEecCCCeEEEeeecC-----CCCcEEEEeeCCCCceeEEEecccC--------ceeEEEEEcC-CCCEEEEEeCCC--
Q 001184 547 MLYSADGSRLFSCGTSK-----EGDSHLVEWNESEGALKRTYIGFRK--------KSAGVVQFDT-TRNRILAAGEDN-- 610 (1130)
Q Consensus 547 ~~~s~~~~~l~~~~~~~-----~~~~~i~~wd~~~~~~~~~~~~~~~--------~~v~~~~~~~-~~~~l~~~~~dg-- 610 (1130)
..+..++..++.++.++ .....+..||..+............ ..-.++.+.. +++.++.|+.++
T Consensus 344 ~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~ 423 (656)
T 1k3i_A 344 GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQ 423 (656)
T ss_dssp GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSS
T ss_pred ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCC
Confidence 11223444445544311 1145688899887764433322111 0123344433 566777777532
Q ss_pred ---------cEEEEeCCCCceeEEEeccCCCCC-cceEEEcCCCCEEEEEeCC
Q 001184 611 ---------QIKFWDMDNVNMLTSTEAEGGLPS-LPRLRFNKEGNLLVVTTAD 653 (1130)
Q Consensus 611 ---------~i~vwd~~~~~~~~~~~~~~~~~~-i~~v~~s~~~~~l~~~~~d 653 (1130)
.|.+||..+............... ..+++..|++++++.|+.+
T Consensus 424 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 424 DSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp SSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred CCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence 688888887765443301111112 2345667889988888754
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0006 Score=83.58 Aligned_cols=200 Identities=6% Similarity=-0.003 Sum_probs=110.5
Q ss_pred cCCCc-cEEEEEEc-CCCCEEEEEeC-C----CeEEEEEecCC-ccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCC
Q 001184 406 KDSSI-SVSRVAWS-PDGNFIGVAFT-K----HLIHLYTYQGS-NDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD 477 (1130)
Q Consensus 406 ~~h~~-~V~~v~~s-pdg~~las~~~-d----~~i~vwd~~~~-~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d 477 (1130)
.+|.- .+...+|| |||++||.+.. + .+|+++|+.++ +.+.. .+.. ....++|+|||+. |+....|
T Consensus 169 ~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~---~~~~~~WspDg~~--l~y~~~d 241 (751)
T 2xe4_A 169 EGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSG---TNGEIVWGPDHTS--LFYVTKD 241 (751)
T ss_dssp TTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEE---ECSCCEECSSTTE--EEEEEEC
T ss_pred cCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccC---ceeeEEEecCCCE--EEEEEEC
Confidence 34553 68899999 99999987643 2 25999999998 63321 1221 2457899999985 3433333
Q ss_pred -----CcEEEEec-CCCe--eeEec-CCCcCEEEEeecccCCccEEEEEec---CCcEEEEEccCCc-ce--eee-cCCC
Q 001184 478 -----KLIRVWDL-SGRK--LFQFE-GHEAPVYSVCPHQKENIHFIFSTAV---DGKIKAWLYDNVG-SR--VDY-DAPG 541 (1130)
Q Consensus 478 -----~~v~iwd~-~~~~--~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~---dg~i~vwd~~~~~-~~--~~~-~~~~ 541 (1130)
..|.+++. ++.. ...+. ........+.|+ +|+++|+..+. ...|.++|+.+.. .. ..+ ....
T Consensus 242 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~S--pDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~ 319 (751)
T 2xe4_A 242 ETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKA--ADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREK 319 (751)
T ss_dssp TTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEEC--TTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCT
T ss_pred CCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEEC--CCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCC
Confidence 35777773 3321 22222 222345566664 56677766553 3457778887652 12 222 2233
Q ss_pred ccEEEEEEecCCCeEEEeeecC-CCCcEEEEeeCCCC-ceeE-EEecccCceeEEEEEcCCCCE-EEEEeCCCc--EEEE
Q 001184 542 LWCTTMLYSADGSRLFSCGTSK-EGDSHLVEWNESEG-ALKR-TYIGFRKKSAGVVQFDTTRNR-ILAAGEDNQ--IKFW 615 (1130)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~-~~~~~i~~wd~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~--i~vw 615 (1130)
....++.|. +|..|+..+... .+...|+.++..++ .... .+....+..+..+.+ .++. +++...++. |+++
T Consensus 320 ~~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 320 GVRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp TCCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEEETTEEEEEEE
T ss_pred CceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEEeCCEEEEEEE
Confidence 344444443 366666655321 24568889998753 3222 233222223444444 3444 455666775 5556
Q ss_pred eC
Q 001184 616 DM 617 (1130)
Q Consensus 616 d~ 617 (1130)
++
T Consensus 397 dl 398 (751)
T 2xe4_A 397 MA 398 (751)
T ss_dssp EC
T ss_pred ec
Confidence 65
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.001 Score=75.29 Aligned_cols=249 Identities=11% Similarity=0.081 Sum_probs=142.6
Q ss_pred ceeEEEEec-CCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeC-CC----cEEEEEeecC
Q 001184 835 VVPCVALSK-NDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGME-DS----TIQIYNVRVD 907 (1130)
Q Consensus 835 ~i~~l~~s~-dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~-dg----~v~iwd~~~~ 907 (1130)
....++++| ++..|.++. .+.|+.+|+.++....... .......++|++ ++++|+++.. ++ .+.+++.. +
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~~-g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTRE-S 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEGG-G
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeCC-C
Confidence 457899998 455566655 5789999998876554443 456688999999 7775555544 22 23334432 3
Q ss_pred eEE--EEEecCCCCeeEEEEcc-CCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-
Q 001184 908 EVK--TKLKGHQKHITGLAFST-NLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN- 983 (1130)
Q Consensus 908 ~~~--~~l~~h~~~V~~l~~s~-dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~- 983 (1130)
... ..+.. .....+++++| +|..+++-..++.|..++.+.+... ....... ......++|+|+|++|++.
T Consensus 215 ~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~--~~~~~~~---~~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 215 GFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT--PLFTIQD---SGWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp TSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE--EEEECSS---SSCCEEEEECTTSSEEEEEE
T ss_pred ceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE--EEEEcCC---CCcceeEEEcCCCCEEEEEE
Confidence 211 22221 23457789999 6666666667788999998864431 1111111 1346789999999966653
Q ss_pred -cCCcEEEEECCC--cee--eeeeecC---CC----------CCCCeEEEEEC--------CCCCEEEEEeCCCcEEEEe
Q 001184 984 -HETQLAIYDGSK--MEC--IRQWVPQ---DV----------LSSPISSAAYS--------CNSQLIYATFTDGSIGVFD 1037 (1130)
Q Consensus 984 -~d~~i~v~d~~~--~~~--~~~~~~~---~~----------~~~~v~~v~~s--------~dg~~l~t~~~Dg~i~vwd 1037 (1130)
..+.|..++... +.. +..+.+. .+ ...+-..++.. ++|.+.++-...++|+.++
T Consensus 289 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~ 368 (430)
T 3tc9_A 289 VNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT 368 (430)
T ss_dssp TTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC
T ss_pred CCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC
Confidence 577888877652 222 1222211 00 11122245553 4466666655678899998
Q ss_pred CCCcccccccCCC-----ccccc-CCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 001184 1038 ADSLRLRCRIAPS-----AYMSQ-ASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1093 (1130)
Q Consensus 1038 ~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~ 1093 (1130)
.+|+........ .+... ....+.-..+..+++.|+++.++++-...+.|+..++.
T Consensus 369 -~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 369 -PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp -TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 455543322110 00000 00011123567788888556677776667788887764
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0011 Score=74.87 Aligned_cols=240 Identities=9% Similarity=0.115 Sum_probs=136.8
Q ss_pred cEEEEEEcC-CCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCC----cEEEEec
Q 001184 411 SVSRVAWSP-DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK----LIRVWDL 485 (1130)
Q Consensus 411 ~V~~v~~sp-dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~----~v~iwd~ 485 (1130)
....++++| ++..|.++...+.|+.+|..++.. . .+.........++|+++|+. ++++...++ .+.+.+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v-~---~~~~~~~~P~~ia~d~~G~~-lyvad~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYV-S---TVYSGLSKVRTICWTHEADS-MIITNDQNNNDRPNNYILTR 212 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEE-E---EEECCCSCEEEEEECTTSSE-EEEEECCSCTTSEEEEEEEG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEE-E---EEecCCCCcceEEEeCCCCE-EEEEeCCCCcccceEEEEeC
Confidence 467899998 455666665557899999887542 2 23334556889999999984 233333222 3444444
Q ss_pred CCCee--eEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeec-CCCccEEEEEEecCCCeEEEeeec
Q 001184 486 SGRKL--FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD-APGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 486 ~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
.+... ..+.. ......+++++. ++.++++-..++.|..++.+......... ........++|+|+|++|+.+..
T Consensus 213 ~g~~~~~~~l~~-~~~p~giavdp~-~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~- 289 (430)
T 3tc9_A 213 ESGFKVITELTK-GQNCNGAETHPI-NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV- 289 (430)
T ss_dssp GGTSCSEEEEEE-CSSCCCEEECTT-TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET-
T ss_pred CCceeeeeeecc-CCCceEEEEeCC-CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC-
Confidence 44332 22221 223455666542 45666666678899999987654422222 22245788999999997666642
Q ss_pred CCCCcEEEEeeCCC--Cce--eEEEecc------c---------CceeEEEEEc--------CCCCEEEEEeCCCcEEEE
Q 001184 563 KEGDSHLVEWNESE--GAL--KRTYIGF------R---------KKSAGVVQFD--------TTRNRILAAGEDNQIKFW 615 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~--~~~--~~~~~~~------~---------~~~v~~~~~~--------~~~~~l~~~~~dg~i~vw 615 (1130)
....|+.++... +.. ...+.+. . ..+...+++. +++..+++=...+.|+.+
T Consensus 290 --~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i 367 (430)
T 3tc9_A 290 --NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRIL 367 (430)
T ss_dssp --TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEE
T ss_pred --CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEE
Confidence 267888877542 222 2233221 0 0011145443 335555555566789988
Q ss_pred eCCCCceeEEEec---------cC------CCCCcceEEEcCC-CCEEEEEeCCCcEEEEEc
Q 001184 616 DMDNVNMLTSTEA---------EG------GLPSLPRLRFNKE-GNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 616 d~~~~~~~~~~~~---------~~------~~~~i~~v~~s~~-~~~l~~~~~dg~i~iw~~ 661 (1130)
+. +|........ .+ .......++++|+ +.++++-..++.|+.++.
T Consensus 368 ~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 368 TP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp CT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 84 5544333321 00 0123578999984 555555455677777765
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.93 E-value=0.019 Score=64.05 Aligned_cols=233 Identities=10% Similarity=-0.025 Sum_probs=141.8
Q ss_pred cCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEE-eCCCeEEEEEecCCccce-e
Q 001184 369 DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA-FTKHLIHLYTYQGSNDLC-Q 446 (1130)
Q Consensus 369 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~-~~d~~i~vwd~~~~~~~~-~ 446 (1130)
...|+..++....... +......+..++|++.+..|... ...+.|..+++.+..... .
T Consensus 91 ~~~I~~i~l~~~~~~~--------------------~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~ 150 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY 150 (400)
T ss_dssp TTEEEEECTTSCSCEE--------------------EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCC
T ss_pred cceeEEEccCCcceeE--------------------eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcc
Confidence 4688888887654332 12334578899999976655555 456789999887632100 1
Q ss_pred eeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEec-CCCcCEEEEeecccCCccEEEEEec-CCcEE
Q 001184 447 SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE-GHEAPVYSVCPHQKENIHFIFSTAV-DGKIK 524 (1130)
Q Consensus 447 ~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~ 524 (1130)
...+.........+++.+.+.. +.++-...+.|.+.+.+|.....+. ........+++.|.. +.++++-.. .+.|.
T Consensus 151 ~~~~~~~~~~p~glavD~~~~~-lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~-g~ly~td~~~~~~I~ 228 (400)
T 3p5b_L 151 DTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIK 228 (400)
T ss_dssp EEEECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTT-TEEEEEECSSSCCEE
T ss_pred eEEEeCCCCCcccEEEEecCCc-eEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEeccc-CeEEEEeCCCCCEEE
Confidence 1122323456789999985554 5566667789999997776555443 334457888887643 334444322 47888
Q ss_pred EEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEeccc-CceeEEEEEcCCCCEE
Q 001184 525 AWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR-KKSAGVVQFDTTRNRI 603 (1130)
Q Consensus 525 vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l 603 (1130)
..+++...........-.....+++++++..|+.+-. ....|..+|+............. -.....+++. .+..+
T Consensus 229 ~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~ly 304 (400)
T 3p5b_L 229 KGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVF 304 (400)
T ss_dssp EEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEE
T ss_pred EEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEEC---CCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEE
Confidence 8888765544444444457899999998888887743 36789999986543333333211 1123345552 23344
Q ss_pred EEEeCCCcEEEEeCCCCceeEEEe
Q 001184 604 LAAGEDNQIKFWDMDNVNMLTSTE 627 (1130)
Q Consensus 604 ~~~~~dg~i~vwd~~~~~~~~~~~ 627 (1130)
++-...+.|..+|..+|+.+..+.
T Consensus 305 wtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 305 WTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EEESSSCSEEEEESSSCCCCEEEE
T ss_pred EecCCCCeEEEEEcCCCCceEEEe
Confidence 455566788888877776665554
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0092 Score=64.15 Aligned_cols=231 Identities=10% Similarity=0.038 Sum_probs=141.0
Q ss_pred cCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE-EEEeCCCeEEEEEecCCccceee
Q 001184 369 DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI-GVAFTKHLIHLYTYQGSNDLCQS 447 (1130)
Q Consensus 369 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l-as~~~d~~i~vwd~~~~~~~~~~ 447 (1130)
...|+..|+.+...... . .. .....+..++|.+.+..| .+-...+.|..++..++.....
T Consensus 12 ~~~I~~i~l~~~~~~~~--~---------------~~-~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~- 72 (318)
T 3sov_A 12 RRDLRLVDATNGKENAT--I---------------VV-GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN- 72 (318)
T ss_dssp EEEEEEEETTCTTSCCE--E---------------EE-EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE-
T ss_pred cCeEEEEECCCCceEEE--E---------------Ee-cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE-
Confidence 56899999987541110 0 11 112356789999865554 4445678899999887642111
Q ss_pred eeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEec-CCCcCEEEEeecccCCccEEEEEe--cCCcEE
Q 001184 448 LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE-GHEAPVYSVCPHQKENIHFIFSTA--VDGKIK 524 (1130)
Q Consensus 448 ~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s--~dg~i~ 524 (1130)
.+...-.....+++.+.+.. ++++-...+.|.+++.+|.....+. ........+++.+.. ..|+.+. ..+.|.
T Consensus 73 -~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~--g~ly~td~~~~~~I~ 148 (318)
T 3sov_A 73 -VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS--GFMYWTDWGEVPKIE 148 (318)
T ss_dssp -EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGG--TEEEEEECSSSCEEE
T ss_pred -EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCC--CEEEEEecCCCCEEE
Confidence 12222345778999976654 5566667789999997776554443 344567888887543 3444443 357788
Q ss_pred EEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEE
Q 001184 525 AWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRIL 604 (1130)
Q Consensus 525 vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 604 (1130)
..+++...........-.....+++++++..|+.+-. ..+.|..+|..... .+.+..........+++.. +..++
T Consensus 149 r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~~~I~~~d~dG~~-~~~~~~~~~~~P~glav~~-~~lyw 223 (318)
T 3sov_A 149 RAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTN-RQAVVKGSLPHPFALTLFE-DILYW 223 (318)
T ss_dssp EEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCS-CEEEECSCCSCEEEEEEET-TEEEE
T ss_pred EEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CCCEEEEEcCCCCc-eEEEecCCCCCceEEEEeC-CEEEE
Confidence 8887654433333333446789999998888877643 36789999976433 3333221122344566642 34445
Q ss_pred EEeCCCcEEEEeCCCCceeEEEe
Q 001184 605 AAGEDNQIKFWDMDNVNMLTSTE 627 (1130)
Q Consensus 605 ~~~~dg~i~vwd~~~~~~~~~~~ 627 (1130)
+-...+.|..++..+++....+.
T Consensus 224 td~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 224 TDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp EETTTTEEEEEETTTCCSCEEEE
T ss_pred EecCCCeEEEEECCCCCceEEEe
Confidence 55566788888887777655554
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0027 Score=68.34 Aligned_cols=209 Identities=12% Similarity=0.024 Sum_probs=130.6
Q ss_pred CCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCC-EEEE
Q 001184 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN-FIGV 426 (1130)
Q Consensus 348 ~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~las 426 (1130)
..+.+++|++.+..++.+-...+.|..++..++..... +....-.....+++.+.+. +..+
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~------------------~~~~~l~~p~glavd~~~g~ly~~ 96 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------VVVSGLLSPDGLACDWLGEKLYWT 96 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE------------------EEEECCSCCCEEEEETTTTEEEEE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE------------------EEcCCCCCccEEEEEcCCCeEEEE
Confidence 46789999997666777767778999999876632110 1112223466899998555 4455
Q ss_pred EeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEE-cCCCcEEEEecCCCeeeEec-CCCcCEEEEe
Q 001184 427 AFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTC-GDDKLIRVWDLSGRKLFQFE-GHEAPVYSVC 504 (1130)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~-s~d~~v~iwd~~~~~~~~~~-~h~~~v~~~~ 504 (1130)
-...+.|.++++.+... .. .+.........+++.|.+.. ++++- +..+.|...+.+|.....+. ..-...+.++
T Consensus 97 d~~~~~I~~~~~dG~~~-~~--l~~~~~~~P~giavdp~~g~-ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pngla 172 (318)
T 3sov_A 97 DSETNRIEVSNLDGSLR-KV--LFWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLT 172 (318)
T ss_dssp ETTTTEEEEEETTSCSC-EE--EECSSCSSEEEEEEEGGGTE-EEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred ECCCCEEEEEECCCCcE-EE--EEeCCCCCccEEEEeCCCCE-EEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEE
Confidence 55678899999876432 21 12234456789999997664 33333 34578888887776555443 2234567888
Q ss_pred ecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEe
Q 001184 505 PHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYI 584 (1130)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1130)
+++.. +.+.++-+..+.|..+|++.................+++.. ..++..-. +.+.|..++..+|+....+.
T Consensus 173 vd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~--~~lywtd~---~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 173 LDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE--DILYWTDW---STHSILACNKYTGEGLREIH 246 (318)
T ss_dssp EETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET--TEEEEEET---TTTEEEEEETTTCCSCEEEE
T ss_pred EeccC-CEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC--CEEEEEec---CCCeEEEEECCCCCceEEEe
Confidence 86533 34555556678899999876444443333344566777753 34444332 36788888887777655554
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0021 Score=72.65 Aligned_cols=251 Identities=9% Similarity=0.034 Sum_probs=144.4
Q ss_pred ceeEEEEecC--CCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCC---C-cEEEEEeecC
Q 001184 835 VVPCVALSKN--DSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED---S-TIQIYNVRVD 907 (1130)
Q Consensus 835 ~i~~l~~s~d--g~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~d---g-~v~iwd~~~~ 907 (1130)
....++++|+ +..|..+. .+.|+.+|..++...... ........+++++ ++.++++.... . .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 4568999984 44555555 588999999887765443 3455689999999 67754443321 1 1333333222
Q ss_pred eE-EEEEecCCCCeeEEEEcc-CCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE--
Q 001184 908 EV-KTKLKGHQKHITGLAFST-NLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-- 983 (1130)
Q Consensus 908 ~~-~~~l~~h~~~V~~l~~s~-dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-- 983 (1130)
.. ...+. .......+++.| +|.+.++-..++.|+.++..++...... ..... ......++|+|++.+|.++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~-~~~~~---~~~~~~ia~dpdG~~LYvad~ 292 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEE-VMMDT---KGSNFHIVWHPTGDWAYIIYN 292 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEE-EECSC---CSSCEEEEECTTSSEEEEEET
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEE-eccCC---CCCcccEEEeCCCCEEEEEeC
Confidence 11 11122 223456789999 6666656556788999998865431111 11111 1223469999999966654
Q ss_pred cCCcEEEEECC--Ccee--eeeeecC---CC---------CCCCeEEEEE---------CCCCCEEEEEeCCCcEEEEeC
Q 001184 984 HETQLAIYDGS--KMEC--IRQWVPQ---DV---------LSSPISSAAY---------SCNSQLIYATFTDGSIGVFDA 1038 (1130)
Q Consensus 984 ~d~~i~v~d~~--~~~~--~~~~~~~---~~---------~~~~v~~v~~---------s~dg~~l~t~~~Dg~i~vwd~ 1038 (1130)
..+.|+.++.. ++.. ...+.+. .+ .-.....+++ .++|.+.++-...++|++++.
T Consensus 293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 46788887765 3321 1122111 00 0123567999 777777777667789999985
Q ss_pred CCcccccccCCCc-----cccc-CCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 001184 1039 DSLRLRCRIAPSA-----YMSQ-ASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1093 (1130)
Q Consensus 1039 ~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~ 1093 (1130)
+|.......... +... ......-..+..+++.|.++.++++-...++|+..++.
T Consensus 373 -~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 373 -EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp -TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 554432221100 0000 00011223467788886567777777777888888764
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0086 Score=63.52 Aligned_cols=197 Identities=10% Similarity=0.178 Sum_probs=125.7
Q ss_pred CCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCC---CCc---EEEEEe-C--CCcEEEEEee--cCeEEE
Q 001184 844 NDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQ---DNN---IIAIGM-E--DSTIQIYNVR--VDEVKT 911 (1130)
Q Consensus 844 dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~---~~~---~lasg~-~--dg~v~iwd~~--~~~~~~ 911 (1130)
...+++... .+.+.+||+ +++.+..+.. +.++.+..-|+ +++ ++++.. . +++|.+|++. +++ +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 344544444 688999999 7888888753 66777777761 111 333333 3 5789999884 333 44
Q ss_pred EEec------CC-CCeeEEEE--ccC-CC-eEEEEeCCCcEEEEECCC---CcccceeeEeccCCCCCCCeEEEEEcCCC
Q 001184 912 KLKG------HQ-KHITGLAF--STN-LN-ILVSSGSDAQLIFWNTDT---WEKRKSIAIQLPAGKLPVGETRVQFHSDQ 977 (1130)
Q Consensus 912 ~l~~------h~-~~V~~l~~--s~d-g~-~L~s~s~Dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 977 (1130)
.+.. .. ..+..+++ +|. ++ ++++...+|.+..|++.. +.........+..+ ..+..++..+..
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg---sq~EgcvvDd~~ 191 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN---SQTEGMAADDEY 191 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS---SCEEEEEEETTT
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC---CCcceEEEcCCC
Confidence 4421 11 55677888 775 43 688888899999999843 22222222333222 567888888887
Q ss_pred cEEEEE-cCCcEEEEECC-----CceeeeeeecCCCCCCCeEEEEE--CCCCC-EEEEEe-CCCcEEEEeCC-Ccccccc
Q 001184 978 VRLLVN-HETQLAIYDGS-----KMECIRQWVPQDVLSSPISSAAY--SCNSQ-LIYATF-TDGSIGVFDAD-SLRLRCR 1046 (1130)
Q Consensus 978 ~~l~~~-~d~~i~v~d~~-----~~~~~~~~~~~~~~~~~v~~v~~--s~dg~-~l~t~~-~Dg~i~vwd~~-~~~~~~~ 1046 (1130)
..|+++ .+..|..|+.+ +++.+..+... .....+..|++ .++|+ +|++++ .+.+..|||.. +.+.+..
T Consensus 192 g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g-~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~ 270 (355)
T 3amr_A 192 GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGR-HLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD 270 (355)
T ss_dssp TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSS-SBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred CeEEEecccceEEEEeCCcCCCCCceEEEEecCC-ccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence 777775 45567777754 34555544221 12346888888 56666 777777 56799999997 6666666
Q ss_pred cC
Q 001184 1047 IA 1048 (1130)
Q Consensus 1047 ~~ 1048 (1130)
+.
T Consensus 271 f~ 272 (355)
T 3amr_A 271 FR 272 (355)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0044 Score=69.99 Aligned_cols=239 Identities=8% Similarity=0.094 Sum_probs=136.3
Q ss_pred cEEEEEEcCC--CCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCC---C-cEEEEe
Q 001184 411 SVSRVAWSPD--GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD---K-LIRVWD 484 (1130)
Q Consensus 411 ~V~~v~~spd--g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d---~-~v~iwd 484 (1130)
....++|+|+ +..|..+...+.|+.+|..++... .+.........++|+++|+ ++++.... . .+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~----~~~~~~~~P~giavd~dG~--lyVad~~~~~~~~gv~~~~ 213 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD----IKTTNIGQCADVNFTLNGD--MVVVDDQSSDTNTGIYLFT 213 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE----EECCCCSCEEEEEECTTCC--EEEEECCSCTTSEEEEEEC
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE----EeecCCCCccEEEECCCCC--EEEEcCCCCcccceEEEEE
Confidence 4678999995 444555544488999998776532 2333445689999999999 55554421 1 233344
Q ss_pred cCCCee--eEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcc-eeee-cCCCccEEEEEEecCCCeEEEee
Q 001184 485 LSGRKL--FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS-RVDY-DAPGLWCTTMLYSADGSRLFSCG 560 (1130)
Q Consensus 485 ~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~-~~~~~~v~~~~~s~~~~~l~~~~ 560 (1130)
..+... ..+. .......+++++. ++.+.++-..++.|+.+|..++.. ...+ .........++|+|+|++|+.+-
T Consensus 214 ~~~~~~~~~~~~-~~~~P~giavd~~-~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad 291 (433)
T 4hw6_A 214 RASGFTERLSLC-NARGAKTCAVHPQ-NGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY 291 (433)
T ss_dssp GGGTTCCEEEEE-ECSSBCCCEECTT-TCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred CCCCeecccccc-ccCCCCEEEEeCC-CCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe
Confidence 222211 1111 1233445666542 445555656678899888875544 1111 11222345799999999776664
Q ss_pred ecCCCCcEEEEeeCC--CCce--eEEEecc------cC--------ceeEEEEE---------cCCCCEEEEEeCCCcEE
Q 001184 561 TSKEGDSHLVEWNES--EGAL--KRTYIGF------RK--------KSAGVVQF---------DTTRNRILAAGEDNQIK 613 (1130)
Q Consensus 561 ~~~~~~~~i~~wd~~--~~~~--~~~~~~~------~~--------~~v~~~~~---------~~~~~~l~~~~~dg~i~ 613 (1130)
. ....|+.++.. ++.. ...+.+. .+ .....+++ .++++++++-...+.|+
T Consensus 292 ~---~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~ 368 (433)
T 4hw6_A 292 N---GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVR 368 (433)
T ss_dssp T---TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEE
T ss_pred C---CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEE
Confidence 2 36789887754 3322 1233221 00 12345788 66666666666678899
Q ss_pred EEeCCCCceeEEEeccCC----------------CCCcceEEEc-CCCCEEEEEeCCCcEEEEEcC
Q 001184 614 FWDMDNVNMLTSTEAEGG----------------LPSLPRLRFN-KEGNLLVVTTADQGIKILANA 662 (1130)
Q Consensus 614 vwd~~~~~~~~~~~~~~~----------------~~~i~~v~~s-~~~~~l~~~~~dg~i~iw~~~ 662 (1130)
.++. +|... ++...+. ......++++ +++.++++-..++.|+.++++
T Consensus 369 ~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 369 VLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 9985 55433 3322111 1234578888 566555555556777777653
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0076 Score=67.94 Aligned_cols=255 Identities=9% Similarity=0.000 Sum_probs=145.1
Q ss_pred ceeEEEEec-CCCEEEEEe--CCeEEEEECCCceeEEEEeCC---CCCeEEEEE-------eCCCCcEEEEEeCCC----
Q 001184 835 VVPCVALSK-NDSYVMSAG--GGKVSLFNMMNFKVMTTFMSP---PPASTFLAF-------HPQDNNIIAIGMEDS---- 897 (1130)
Q Consensus 835 ~i~~l~~s~-dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~---~~~i~~l~~-------sp~~~~~lasg~~dg---- 897 (1130)
....|+|+| +...|.++. .+.|++.|+.++......... ......++| ++ ++..|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 467899998 355555554 366999999988777655432 235889999 99 666555555443
Q ss_pred ---cEEEEEeec-CeEE-----EEEecCCCCeeEEEEccCCCe-EEEEeCCCcEEEEECC-------CCcc------c--
Q 001184 898 ---TIQIYNVRV-DEVK-----TKLKGHQKHITGLAFSTNLNI-LVSSGSDAQLIFWNTD-------TWEK------R-- 952 (1130)
Q Consensus 898 ---~v~iwd~~~-~~~~-----~~l~~h~~~V~~l~~s~dg~~-L~s~s~Dg~i~vwd~~-------~~~~------~-- 952 (1130)
.|.+++... +... ..+... .....++++|++.. +++--.++.|..+|++ ++.. .
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 256665443 2211 122211 23457889996555 4455567889999998 4433 0
Q ss_pred --ceeeEeccCCCCCCCeEEEEEcCCCcEEEEE--cCCcEEEEEC--CCceee--eeeecC---CCC---------CCCe
Q 001184 953 --KSIAIQLPAGKLPVGETRVQFHSDQVRLLVN--HETQLAIYDG--SKMECI--RQWVPQ---DVL---------SSPI 1012 (1130)
Q Consensus 953 --~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~--~d~~i~v~d~--~~~~~~--~~~~~~---~~~---------~~~v 1012 (1130)
......... ......++|+|+|.+|.++ ..+.|+.++. .++... ..+.+. .+. -...
T Consensus 298 g~~~~l~~~~~---~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P 374 (496)
T 3kya_A 298 NTFKQLFTIAD---PSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNP 374 (496)
T ss_dssp TTEEEEEECSS---SSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSE
T ss_pred cccceeEecCC---CCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCC
Confidence 011122211 1345789999999965553 5678888554 333221 122211 100 0123
Q ss_pred E-EEEEC-------CCCCEEEEEeCCCcEEEEeCCCcccccccCCCc------------cccc-CCCCCceeeeEEEEEc
Q 001184 1013 S-SAAYS-------CNSQLIYATFTDGSIGVFDADSLRLRCRIAPSA------------YMSQ-ASPNSQTVFPLVVTSH 1071 (1130)
Q Consensus 1013 ~-~v~~s-------~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~------------~~~~-~~~~~~~~~~~~~~~~ 1071 (1130)
. .++.. ++|.+.++-....+|+.++ .+|... .+.... +... ....+.-..+..+++.
T Consensus 375 ~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~-TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd 452 (496)
T 3kya_A 375 CQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVS-TYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYD 452 (496)
T ss_dssp EEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEE-EEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEE
T ss_pred eEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEE-EEecccccccccCccccccCCCCchhhhhcCCCcEEEEE
Confidence 3 45554 4666666666778999999 456432 322110 0000 0001122346778888
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCc
Q 001184 1072 PQEPNQLAVGLTDGSVKVIEPSETE 1096 (1130)
Q Consensus 1072 ~~~~~~l~s~~~Dg~v~vW~~~~~~ 1096 (1130)
+.++.++++=....+|+.+++....
T Consensus 453 ~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 453 DVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp TTTTEEEEEETTTTEEEEEEECCCC
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCc
Confidence 8546666666667889999887655
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.01 Score=71.96 Aligned_cols=217 Identities=7% Similarity=-0.035 Sum_probs=130.6
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCE
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 423 (1130)
......+.+++|++.+.+|+++-...+.|+.+++........ ...++.........|++.+.++.
T Consensus 420 ~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~---------------~~~vi~~~l~~P~GLAvD~~~~~ 484 (791)
T 3m0c_C 420 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS---------------YDTVISRDIQAPDGLAVDWIHSN 484 (791)
T ss_dssp ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------------CEEEECSSCSCCCEEEEETTTTE
T ss_pred ecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcc---------------eeEEEecCCCCcceeeeeecCCc
Confidence 345567889999997666677766778899998875321100 00023323445678999987765
Q ss_pred EEE-EeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecC-CCcCEE
Q 001184 424 IGV-AFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEG-HEAPVY 501 (1130)
Q Consensus 424 las-~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~-h~~~v~ 501 (1130)
|.. -...+.|.+.++.+.. ... .+.........|++.|.+..+++.-.+..+.|...+..|.....+.. .-....
T Consensus 485 LY~tD~~~~~I~v~~ldG~~-~~~--l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~ 561 (791)
T 3m0c_C 485 IYWTDSVLGTVSVADTKGVK-RKT--LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 561 (791)
T ss_dssp EEEEETTTTEEEEEETTSSS-EEE--EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEE
T ss_pred EEEEecCCCeEEEEeCCCCe-EEE--EEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCce
Confidence 554 4567889999987643 221 12334456889999998764332222334778888888877666543 335678
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCC--ccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCce
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG--LWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL 579 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1130)
.|++.+.. +.+.++-...+.|...+++............ ....+|++. +.+|+.+-. ..+.|...|..+|+.
T Consensus 562 GLavD~~~-~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~---~~~~I~~~dk~tG~~ 635 (791)
T 3m0c_C 562 GITLDLLS-GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDI---INEAIFSANRLTGSD 635 (791)
T ss_dssp EEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEET---TTTEEEEEETTTCCC
T ss_pred EEEEecCC-CeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEEC---CCCEEEEEeCCCCcc
Confidence 88886543 3444454556788888887655544443321 234456553 445555532 257787777777766
Q ss_pred eEEEe
Q 001184 580 KRTYI 584 (1130)
Q Consensus 580 ~~~~~ 584 (1130)
+..+.
T Consensus 636 ~~~l~ 640 (791)
T 3m0c_C 636 VNLLA 640 (791)
T ss_dssp CEEEE
T ss_pred eEEee
Confidence 65554
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.038 Score=66.91 Aligned_cols=231 Identities=10% Similarity=-0.005 Sum_probs=139.3
Q ss_pred cCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE-EEEeCCCeEEEEEecCCccc-ee
Q 001184 369 DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI-GVAFTKHLIHLYTYQGSNDL-CQ 446 (1130)
Q Consensus 369 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l-as~~~d~~i~vwd~~~~~~~-~~ 446 (1130)
...|+..++...+... +......+..++|++.+..| .+-...+.|+.+++...... ..
T Consensus 403 ~~~Ir~i~l~~~~~~~--------------------l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~ 462 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY 462 (791)
T ss_dssp BSSEEEECTTSCCCEE--------------------EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C
T ss_pred ccceeEeeccCCccee--------------------eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcce
Confidence 4567877776554321 22234567899999965554 44455678999988753210 11
Q ss_pred eeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEec-CCCcCEEEEeecccCCccEEEEEecC-CcEE
Q 001184 447 SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE-GHEAPVYSVCPHQKENIHFIFSTAVD-GKIK 524 (1130)
Q Consensus 447 ~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d-g~i~ 524 (1130)
...+.........|++.+.++. ++++-...+.|.+.+.+|.....+. ........|++.+.. +.++++-... +.|.
T Consensus 463 ~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~-g~LYwtD~g~~~~I~ 540 (791)
T 3m0c_C 463 DTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIK 540 (791)
T ss_dssp EEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCEEE
T ss_pred eEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCC-CCEEEecCCCCCeEE
Confidence 1123334456788999988865 5666677889999997777665554 334567889887643 2344443233 6788
Q ss_pred EEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccC-ceeEEEEEcCCCCEE
Q 001184 525 AWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRK-KSAGVVQFDTTRNRI 603 (1130)
Q Consensus 525 vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l 603 (1130)
..+++.......+...-.....|++++.+..|+.+-. +...|...++........+..... .....+++. +.+|
T Consensus 541 ~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~---~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~l 615 (791)
T 3m0c_C 541 KGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKV 615 (791)
T ss_dssp EEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEE
T ss_pred EEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC---CCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEE
Confidence 8888765554444444457899999988888877742 367899999865444333332111 122344443 3344
Q ss_pred EEE-eCCCcEEEEeCCCCceeEEE
Q 001184 604 LAA-GEDNQIKFWDMDNVNMLTST 626 (1130)
Q Consensus 604 ~~~-~~dg~i~vwd~~~~~~~~~~ 626 (1130)
+.+ ...+.|...|..+|+.+..+
T Consensus 616 YwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 616 FWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEEECCCCEEEEEeCCCCcceEEe
Confidence 444 35567777777777655554
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.03 Score=63.07 Aligned_cols=248 Identities=13% Similarity=0.104 Sum_probs=137.3
Q ss_pred CEEEEEEec-CCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEE-------cCC
Q 001184 349 SVVSMDFHP-FHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW-------SPD 420 (1130)
Q Consensus 349 ~V~~v~fsp-dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~-------spd 420 (1130)
....++|+| ++..|+++....+.|++.|..++....... .-.........++| +++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~----------------~~~~~~~~p~~ia~~~~~~~~d~~ 203 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLN----------------INTIPTNRIRSIAFNKKIEGYADE 203 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEEC----------------CTTSSCSBEEEEEECCCBTTTBCT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEc----------------cCccccCCCcEEEEeecccccCCC
Confidence 578999999 455566666556789999998877653100 00112335899999 999
Q ss_pred CCEEEEEeCCC-------eEEEEEecC-Cccce-e-eeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-c----
Q 001184 421 GNFIGVAFTKH-------LIHLYTYQG-SNDLC-Q-SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-L---- 485 (1130)
Q Consensus 421 g~~las~~~d~-------~i~vwd~~~-~~~~~-~-~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~---- 485 (1130)
|++|.++...+ .|.+.+... +.... . ...+.. ......+++.|++.. ++++-..++.|..+| .
T Consensus 204 G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~-LYvtd~~~g~V~r~d~~~~~~ 281 (496)
T 3kya_A 204 AEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGE-LYFNSYEKGQVFRLDLVDYFK 281 (496)
T ss_dssp TCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCC-EEEEETTTTEEEEECHHHHHH
T ss_pred CCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCe-EEEEECCCCEEEEEecccccc
Confidence 99666665543 255665443 22110 0 011211 123467889996654 567777888899999 4
Q ss_pred ---CCCe-----------eeE-ec-CCCcCEEEEeecccCCccE-EEEEecCCcEEEEEccCCcce----eeecCC---C
Q 001184 486 ---SGRK-----------LFQ-FE-GHEAPVYSVCPHQKENIHF-IFSTAVDGKIKAWLYDNVGSR----VDYDAP---G 541 (1130)
Q Consensus 486 ---~~~~-----------~~~-~~-~h~~~v~~~~~~~~~~~~~-l~s~s~dg~i~vwd~~~~~~~----~~~~~~---~ 541 (1130)
++.. ... +. +.......++|++ +++. .++-+..++|+.++.+..... ..+.+. .
T Consensus 282 ~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p--~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~ 359 (496)
T 3kya_A 282 TIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHP--TGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQS 359 (496)
T ss_dssp HHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECT--TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBC
T ss_pred cccCceeecccccccccccceeEecCCCCCceEEEEcC--CCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCC
Confidence 4443 112 11 2234457888865 4464 455566788988776543211 111110 0
Q ss_pred ------------ccEE-EEEEe-------cCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEeccc--------------
Q 001184 542 ------------LWCT-TMLYS-------ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR-------------- 587 (1130)
Q Consensus 542 ------------~~v~-~~~~s-------~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-------------- 587 (1130)
.... .++.. ++|.++++-.. ...|+.++ .+|. +.++.+..
T Consensus 360 G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~----N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~ 433 (496)
T 3kya_A 360 GYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRL----NFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTD 433 (496)
T ss_dssp CCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGG----GTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCC
T ss_pred cccCCcccccccCCCeEEEEEccccccccCCCeEEEEECC----CCEEEEEe-CCCC-EEEEecccccccccCccccccC
Confidence 1234 45554 44555544432 67899998 4563 44554321
Q ss_pred Cc---------eeEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCce
Q 001184 588 KK---------SAGVVQFDTT-RNRILAAGEDNQIKFWDMDNVNM 622 (1130)
Q Consensus 588 ~~---------~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~ 622 (1130)
++ ....++++++ +..+++=..+..|+.++++....
T Consensus 434 dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 434 DGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp CEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred CCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence 11 1345677775 44444444556677776655443
|
| >2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A | Back alignment and structure |
|---|
Probab=97.62 E-value=3.5e-05 Score=61.86 Aligned_cols=35 Identities=34% Similarity=0.460 Sum_probs=32.9
Q ss_pred CCcchHHHHHHHHHhhhhccHHHHHHHHHHhcCCC
Q 001184 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFF 35 (1130)
Q Consensus 1 ~~~~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~ 35 (1130)
|++.+.||+.||..||+|.||..||.+|++||+|.
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~ 35 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHIS 35 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence 89999999999999999999999999999999984
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.078 Score=57.23 Aligned_cols=239 Identities=11% Similarity=0.116 Sum_probs=149.3
Q ss_pred EEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCC
Q 001184 352 SMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKH 431 (1130)
Q Consensus 352 ~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~ 431 (1130)
+.-.+|..+ ++|.=. ..++.|+|+++.+.++...+ ...|..-.|-.+. .|+..+ +.
T Consensus 70 sAIMnP~~~-iiALra-g~~lQiFnle~K~klks~~~--------------------~e~VvfWkWis~~-~l~lVT-~t 125 (494)
T 1bpo_A 70 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-DN 125 (494)
T ss_dssp EEEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEEEETT-EEEEEC-SS
T ss_pred eeeeCCCCc-EEEEec-CCeEEEEchHHhhhhcceec--------------------CCCceEEEecCCC-eEEEEc-CC
Confidence 445677776 566544 66899999999887763211 2356677776543 455544 45
Q ss_pred eEEEEEecCCccceeeeeeecCC----CCeeEEEEecCCCceEEEEEc------CCCcEEEEecCCCeeeEecCCCcCEE
Q 001184 432 LIHLYTYQGSNDLCQSLEIDAHV----GGVNDLAFSYPNKQLCIVTCG------DDKLIRVWDLSGRKLFQFEGHEAPVY 501 (1130)
Q Consensus 432 ~i~vwd~~~~~~~~~~~~~~~h~----~~V~~i~~s~d~~~l~l~s~s------~d~~v~iwd~~~~~~~~~~~h~~~v~ 501 (1130)
.|.-|++.+.... .+.+..|. ..|..-..+++.+.+ +++|= -.|.+.+|..+.+.-+.+.||.+.-.
T Consensus 126 aVyHWsi~~~s~P--~kvFdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~ 202 (494)
T 1bpo_A 126 AVYHWSMEGESQP--VKMFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFA 202 (494)
T ss_dssp EEEEEESSSSCCC--EEEEECCGGGTTCEEEEEEECTTSSEE-EEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEE
T ss_pred eeEEecccCCCCc--hhheecchhcccceEEEEEECCCCCeE-EEEeecccCCcccceEEEeeccccccchheeeeeeeE
Confidence 7999999764332 23344443 356777778888853 33322 24678899988888888999987766
Q ss_pred EEeecccCCcc-EEEEEecC---CcEEEEEccCC---cc-----eeeec----CCCccEEEEEEecCCCeEEEeeecCCC
Q 001184 502 SVCPHQKENIH-FIFSTAVD---GKIKAWLYDNV---GS-----RVDYD----APGLWCTTMLYSADGSRLFSCGTSKEG 565 (1130)
Q Consensus 502 ~~~~~~~~~~~-~l~s~s~d---g~i~vwd~~~~---~~-----~~~~~----~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1130)
.+.+...+... ++..+... +.+++-++... .. ...+. ....-..++..++.-..++..+.
T Consensus 203 ~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK---- 278 (494)
T 1bpo_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---- 278 (494)
T ss_dssp EEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET----
T ss_pred EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec----
Confidence 66554332222 33333332 78899888643 11 11111 12334567888888888877765
Q ss_pred CcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 001184 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNM 622 (1130)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 622 (1130)
-|.|++||++++.++..-+-..+ .+...+......-+++....|.|.--.++....
T Consensus 279 ~G~i~lyDleTgt~i~~nrIs~~-~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~i 334 (494)
T 1bpo_A 279 YGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (494)
T ss_dssp TSEEEEEETTTCCEEEEEECCSS-CEEEEEEETTTTEEEEEETTCEEEEEEECTTTH
T ss_pred CceEEEEecccceeeeeecccCC-ceEEecccCCCCcEEEEccCceEEEEEEccccc
Confidence 89999999999999877664333 455555555555566666666666555555443
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.011 Score=62.63 Aligned_cols=185 Identities=14% Similarity=0.183 Sum_probs=116.6
Q ss_pred EEEEEcCCCcEEEEecCCCeeeEecCCCcCEEEEeecccC--Ccc---EEEEEe-c--CCcEEEEEccCCc-ceeeecC-
Q 001184 470 CIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKE--NIH---FIFSTA-V--DGKIKAWLYDNVG-SRVDYDA- 539 (1130)
Q Consensus 470 ~l~s~s~d~~v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~--~~~---~l~s~s-~--dg~i~vwd~~~~~-~~~~~~~- 539 (1130)
++++....+-+.+||.+|+.+..+.. +.++.+..-+.- .+. ++++.. . +++|.+|+++... ....+..
T Consensus 42 ~ii~t~k~~gL~Vydl~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~ 119 (355)
T 3amr_A 42 KLITTNKKSGLVVYSLDGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDP 119 (355)
T ss_dssp EEEEEETTTEEEEEETTSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCT
T ss_pred EEEEEcCCCCEEEEcCCCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecccc
Confidence 56667777899999999999999864 567776654411 111 233333 3 5789999885222 2322311
Q ss_pred -----CC-ccEEEEEE--ecC-CC-eEEEeeecCCCCcEEEEeeC-------CCCceeEEEecccCceeEEEEEcCCCCE
Q 001184 540 -----PG-LWCTTMLY--SAD-GS-RLFSCGTSKEGDSHLVEWNE-------SEGALKRTYIGFRKKSAGVVQFDTTRNR 602 (1130)
Q Consensus 540 -----~~-~~v~~~~~--s~~-~~-~l~~~~~~~~~~~~i~~wd~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 602 (1130)
.. ..+..+++ +|. ++ ++++... ++.+..|++ .+.+.++++... ..+..+...+...+
T Consensus 120 ~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k----~G~~~q~~l~~~~~g~~~~~lVR~f~lg--sq~EgcvvDd~~g~ 193 (355)
T 3amr_A 120 DHPIATAINEVYGFTLYHSQKTGKYYAMVTGK----EGEFEQYELKADKNGYISGKKVRAFKMN--SQTEGMAADDEYGR 193 (355)
T ss_dssp TSCEECCCSSCCCEEEEECTTTCCEEEEEECS----SSEEEEEEEEECTTSCEEEEEEEEEECS--SCEEEEEEETTTTE
T ss_pred ccCcCCCCCCeeEEEEEecCCCCcEEEEEECC----CCeEEEEEEEeCCCCcccceEEEEecCC--CCcceEEEcCCCCe
Confidence 11 45666777 674 44 3444432 688888887 234567777653 35777888888899
Q ss_pred EEEEeCCCcEEEEeCC-----CCceeEEEeccCCCCCcceEEE--cCCCC-EEEEEe-CCCcEEEEEcC
Q 001184 603 ILAAGEDNQIKFWDMD-----NVNMLTSTEAEGGLPSLPRLRF--NKEGN-LLVVTT-ADQGIKILANA 662 (1130)
Q Consensus 603 l~~~~~dg~i~vwd~~-----~~~~~~~~~~~~~~~~i~~v~~--s~~~~-~l~~~~-~dg~i~iw~~~ 662 (1130)
|+.+-++..|..++.+ +++.+..+....-...+..+++ .++++ +|++++ .+.++.+|+..
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 9999999777777755 2345544432211225677777 45555 555555 67799999985
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00046 Score=83.28 Aligned_cols=207 Identities=9% Similarity=-0.061 Sum_probs=124.6
Q ss_pred CceeEEEEecCCCEEEEEe--CCeEEEEECCC----ceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecC
Q 001184 834 DVVPCVALSKNDSYVMSAG--GGKVSLFNMMN----FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD 907 (1130)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 907 (1130)
..+..++|++++..|..+. .+.|+.+++.+ ......+.........|++.+.++.++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3456789998887777765 57899999875 22222222222335668888645666666566788999998765
Q ss_pred eEEEEEecCCCCeeEEEEccCCCeEEEEeC-C-CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE--
Q 001184 908 EVKTKLKGHQKHITGLAFSTNLNILVSSGS-D-AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-- 983 (1130)
Q Consensus 908 ~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~-D-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-- 983 (1130)
.....+.........|++.|++.+|+.+.. . +.|.+.+++..... . +. .. .-.....|+++|++..|+.+
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~-~--l~--~~-~l~~PnGlavd~~~~~LY~aD~ 559 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-S--LV--TE-NIQWPNGITLDLLSGRLYWVDS 559 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC-E--ES--CS-SCSSCCCEEECTTTCCEEEEET
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee-E--EE--eC-CCCCccEEEEeccCCEEEEEec
Confidence 444333333345678999997666665543 2 67777777642211 1 10 00 11345679999987666653
Q ss_pred cCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccC
Q 001184 984 HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIA 1048 (1130)
Q Consensus 984 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~ 1048 (1130)
..+.|.++++..... ..+...........+|++..+ .++++....+.|..++..+|+.+..+.
T Consensus 560 ~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 560 KLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp TTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred CCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 467899999874332 222221111123345566544 455555567899999998888776664
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.071 Score=58.14 Aligned_cols=233 Identities=15% Similarity=0.096 Sum_probs=118.4
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC---CCE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD---GNF 423 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd---g~~ 423 (1130)
-...+.++|.|||+ ++++ ..+|.|+++|. +++ .. +. ++ . +..........|+|+|| +..
T Consensus 28 l~~P~~ia~~pdG~-l~V~-e~~g~I~~~d~-~G~-~~---~~--~~-------~--v~~~g~~g~~gia~~pdf~~~g~ 89 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVT-ERPGRLVLISP-SGK-KL---VA--SF-------D--VANVGEAGLLGLALHPEFPKKSW 89 (354)
T ss_dssp CSCEEEEEEEETTE-EEEE-ETTTEEEEECS-SCE-EE---EE--EC-------C--CCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCCeEEEEcCCCe-EEEE-eCCCEEEEEeC-CCc-eE---ee--cc-------c--eeecCCCceeeEEeCCCCCcCCE
Confidence 35689999999997 4554 55699999973 444 11 00 00 0 11122356889999998 444
Q ss_pred EEEEeC----C----CeEEEEEecCCc-cc---eeee-eee-cCCCCeeEEEEecCCCceEEEEEcC-------------
Q 001184 424 IGVAFT----K----HLIHLYTYQGSN-DL---CQSL-EID-AHVGGVNDLAFSYPNKQLCIVTCGD------------- 476 (1130)
Q Consensus 424 las~~~----d----~~i~vwd~~~~~-~~---~~~~-~~~-~h~~~V~~i~~s~d~~~l~l~s~s~------------- 476 (1130)
|.++.. + ..|..|+...+. .+ +... .+. +.......++|.|||. +.++.+.
T Consensus 90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~G~~~~~~~~~d~~~~ 167 (354)
T 3a9g_A 90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITTGDAADPRLAQDLSSL 167 (354)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEECCCTTCGGGGTCTTCC
T ss_pred EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEECCCCCCccccCCCCC
Confidence 444432 3 567788876541 11 1111 122 1112346799999997 4555332
Q ss_pred CCcEEEEecCCC----------eeeEecCCCcCEEEEeecccCCccEEEEEecCCc-EEEEEccCCc-------------
Q 001184 477 DKLIRVWDLSGR----------KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGK-IKAWLYDNVG------------- 532 (1130)
Q Consensus 477 d~~v~iwd~~~~----------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~-i~vwd~~~~~------------- 532 (1130)
.+.|.-++.+|+ .+. ..+|.. ...++|++. ++.++++-...+. -.+.-+..+.
T Consensus 168 ~G~I~ri~~dG~~p~~npf~~~~i~-a~G~rn-p~Gla~d~~-~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~ 244 (354)
T 3a9g_A 168 AGKILRVDEEGRPPADNPFPNSPIW-SYGHRN-PQGIDWHRA-SGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGR 244 (354)
T ss_dssp SSEEEEECTTSCCCTTSSSTTCCEE-EECCSC-CCEEEECTT-TCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCC
T ss_pred CeEEEEEcCCCCCCCCCCCCCCcEE-EEccCC-cceEEEeCC-CCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCC
Confidence 134555555454 111 123433 356777652 3344444322221 1111122111
Q ss_pred -----ceeeecCCCccEEEEEEe-------cCCCeEEEeeecCCCCcEEEEeeCCCC-cee--EEEecccCceeEEEEEc
Q 001184 533 -----SRVDYDAPGLWCTTMLYS-------ADGSRLFSCGTSKEGDSHLVEWNESEG-ALK--RTYIGFRKKSAGVVQFD 597 (1130)
Q Consensus 533 -----~~~~~~~~~~~v~~~~~s-------~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~--~~~~~~~~~~v~~~~~~ 597 (1130)
....+.........++|. .+|+++++... .+.|...++... +.. ..+.......+..+++.
T Consensus 245 ~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~----~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~ 320 (354)
T 3a9g_A 245 GEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLR----GSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVID 320 (354)
T ss_dssp TTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETT----TTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEEC
T ss_pred CCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcC----CCEEEEEEECCCCcccceeeeccCCCCCeeEEEEC
Confidence 111221223357788884 46655555432 567888777643 222 22221112356778888
Q ss_pred CCCCEEEEE
Q 001184 598 TTRNRILAA 606 (1130)
Q Consensus 598 ~~~~~l~~~ 606 (1130)
|||..+++.
T Consensus 321 pDG~lyv~~ 329 (354)
T 3a9g_A 321 DDGGILIST 329 (354)
T ss_dssp TTSCEEEEE
T ss_pred CCCcEEEEE
Confidence 888655554
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.018 Score=60.56 Aligned_cols=203 Identities=11% Similarity=0.054 Sum_probs=125.2
Q ss_pred eeEEEEecCCCEEEEEe--CCeEEEEECCCceeEEE-EeC----CCC--CeEEEEE---eCCCCcEEEEEeC--------
Q 001184 836 VPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTT-FMS----PPP--ASTFLAF---HPQDNNIIAIGME-------- 895 (1130)
Q Consensus 836 i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~-~~~----~~~--~i~~l~~---sp~~~~~lasg~~-------- 895 (1130)
..+++|.+....+..++ .++|..||..++..... +.. ... .+..|.+ .| +++++++...
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCTTS
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccccccc
Confidence 45788988666666666 79999999986644333 221 111 3578999 68 6888876542
Q ss_pred -----CCcEEEEEee---cCeEEEEEe--cCC-----------CCeeEEEEccCCCeEEEEeCC-CcEEEEECCCCcccc
Q 001184 896 -----DSTIQIYNVR---VDEVKTKLK--GHQ-----------KHITGLAFSTNLNILVSSGSD-AQLIFWNTDTWEKRK 953 (1130)
Q Consensus 896 -----dg~v~iwd~~---~~~~~~~l~--~h~-----------~~V~~l~~s~dg~~L~s~s~D-g~i~vwd~~~~~~~~ 953 (1130)
+..|..||+. +++.+.... ... .....++..++|+..++.+.- +.|...+.+.. ...
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~ 172 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVS 172 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEE
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEe
Confidence 6779999999 777654433 211 247899999999999988887 77666666543 112
Q ss_pred eeeEeccCCCCCCCeEEEEEcCCCcEEEEE-cCCcEEEEECCCcee--eeeee-cCCCCCCCeEEE-EECCCCCE-EEEE
Q 001184 954 SIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKMEC--IRQWV-PQDVLSSPISSA-AYSCNSQL-IYAT 1027 (1130)
Q Consensus 954 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~~~~--~~~~~-~~~~~~~~v~~v-~~s~dg~~-l~t~ 1027 (1130)
......+..........|+++|||..|++. ..+.+..+|+.+... +..-. +..........+ ..-.+|+. |++.
T Consensus 173 ~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~ 252 (334)
T 2p9w_A 173 TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGA 252 (334)
T ss_dssp EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEE
T ss_pred eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEc
Confidence 122222222223457799999999988873 488899999884322 11110 110111233443 33347887 5555
Q ss_pred eCCCcEEEEeCCC
Q 001184 1028 FTDGSIGVFDADS 1040 (1130)
Q Consensus 1028 ~~Dg~i~vwd~~~ 1040 (1130)
...+.+.+.+-+.
T Consensus 253 ~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 253 RAPYAISFRSWDN 265 (334)
T ss_dssp ETTEEEEEECSST
T ss_pred CCCCEEEEECCCC
Confidence 5566666665443
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.22 Score=53.79 Aligned_cols=261 Identities=8% Similarity=0.063 Sum_probs=158.0
Q ss_pred CcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCC
Q 001184 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGN 645 (1130)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~ 645 (1130)
..+|.+.|+..+..+..-.-. ..+.-++|..+.++.-. ...+.|||+++.+.++...... .|.--.|-.+ +
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~----AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e---~VvfWkWis~-~ 117 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISL-N 117 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC----CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS---CCCEEEEEET-T
T ss_pred CCeEEEEECCCCCcceecccc----cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC---CceEEEecCC-C
Confidence 458899999887655333221 22355788888777655 6899999999999999888765 3555555433 3
Q ss_pred EEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccc
Q 001184 646 LLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAA 725 (1130)
Q Consensus 646 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1130)
.|+..+ +..|+-|++.......+.++.|..-
T Consensus 118 ~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L------------------------------------------------ 148 (494)
T 1bpo_A 118 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL------------------------------------------------ 148 (494)
T ss_dssp EEEEEC-SSEEEEEESSSSCCCEEEEECCGGG------------------------------------------------
T ss_pred eEEEEc-CCeeEEecccCCCCchhheecchhc------------------------------------------------
Confidence 455443 5689999986542222222221110
Q ss_pred cCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeee-------CCeEEeeecCC
Q 001184 726 RGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWS-------NGVQKLWKWNR 798 (1130)
Q Consensus 726 ~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-------dg~i~iw~~~~ 798 (1130)
....|.....+++.++++..|- .|.+.+|..+.
T Consensus 149 ----------------------------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er 188 (494)
T 1bpo_A 149 ----------------------------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 188 (494)
T ss_dssp ----------------------------------------TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT
T ss_pred ----------------------------------------ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc
Confidence 1234555556666666664442 25566665443
Q ss_pred CCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCC---CEEEEEe----CCeEEEEECCCc---ee--
Q 001184 799 TEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND---SYVMSAG----GGKVSLFNMMNF---KV-- 866 (1130)
Q Consensus 799 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg---~~la~~~----dg~i~iwd~~~~---~~-- 866 (1130)
... . ..++|......+.+..+. .+++.+. .++++|.++... ..
T Consensus 189 ~~s----------------------Q---~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f 243 (494)
T 1bpo_A 189 KVS----------------------Q---PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF 243 (494)
T ss_dssp CCE----------------------E---EECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCC
T ss_pred ccc----------------------c---hheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCc
Confidence 211 0 111343333322221111 2333333 378999998532 10
Q ss_pred -EEEEe------CCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCC
Q 001184 867 -MTTFM------SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDA 939 (1130)
Q Consensus 867 -~~~~~------~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg 939 (1130)
.+... ...+-..++.+++ .-.++..-+.-|.|++||+.++.++..-+-..+.|..-+...+..=++.....|
T Consensus 244 ~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~G 322 (494)
T 1bpo_A 244 PKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKG 322 (494)
T ss_dssp CCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTC
T ss_pred cceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCc
Confidence 11111 1234467888898 666888889999999999999999988877777787777766666677777888
Q ss_pred cEEEEECCCCc
Q 001184 940 QLIFWNTDTWE 950 (1130)
Q Consensus 940 ~i~vwd~~~~~ 950 (1130)
.|.--.++...
T Consensus 323 qVl~v~v~e~~ 333 (494)
T 1bpo_A 323 QVLSVCVEEEN 333 (494)
T ss_dssp EEEEEEECTTT
T ss_pred eEEEEEEcccc
Confidence 87777766543
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0014 Score=79.03 Aligned_cols=210 Identities=10% Similarity=-0.015 Sum_probs=122.0
Q ss_pred ccEEEEEEcCCCCEEEEE-eCCCeEEEEEecCC---ccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEec
Q 001184 410 ISVSRVAWSPDGNFIGVA-FTKHLIHLYTYQGS---NDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL 485 (1130)
Q Consensus 410 ~~V~~v~~spdg~~las~-~~d~~i~vwd~~~~---~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~ 485 (1130)
..+..++|++++..|..+ ...+.|+.+++.+. ..... .+.........|++.+.+.. ++++-...+.|.+.+.
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~--~i~~~~~~P~glavD~~~g~-LY~tD~~~~~I~v~d~ 482 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADT 482 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCC--BCCSCC--CCCEECCCSSSB-CEECCTTTSCEEEEBS
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEE--EEeCCCCCcceEEEEeeCCc-EEEEeccCCeEEEEec
Confidence 356689999977766655 34578999998751 11111 11112234567888865554 4555566788999997
Q ss_pred CCCeeeEecC-CCcCEEEEeecccCCccEEEEEecC-CcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecC
Q 001184 486 SGRKLFQFEG-HEAPVYSVCPHQKENIHFIFSTAVD-GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1130)
Q Consensus 486 ~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1130)
.+..+..+.. .......+++.+.. +.++++-... +.|.+++++...........-.....|+++|++..|+.+-.
T Consensus 483 dg~~~~~l~~~~~~~P~giavDp~~-g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~-- 559 (699)
T 1n7d_A 483 KGVKRKTLFREQGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS-- 559 (699)
T ss_dssp SSCCEEEECCCSSCCCCCEECCSSS-SCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEET--
T ss_pred CCCceEEEEeCCCCCcceEEEccCC-CcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEec--
Confidence 7766555532 22445667775533 2333333222 67877777644333322223345678999998877776642
Q ss_pred CCCcEEEEeeCCCCceeEEEeccc--CceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEec
Q 001184 564 EGDSHLVEWNESEGALKRTYIGFR--KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA 628 (1130)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 628 (1130)
..+.|..+++.... .+.+.... ......+++..+ ..+++....+.|..++..+++.+..+..
T Consensus 560 -~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 560 -KLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp -TTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred -CCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 36789999986433 33332211 112223455433 3444455668899999888877766543
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.034 Score=58.41 Aligned_cols=163 Identities=9% Similarity=0.059 Sum_probs=106.9
Q ss_pred EEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeee--cCCCccEEEEEE---cCCCCEE
Q 001184 350 VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIV--KDSSISVSRVAW---SPDGNFI 424 (1130)
Q Consensus 350 V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~v~~---spdg~~l 424 (1130)
-.+++|.+.+.+++++.-..++|..||...+..... .+. . +. ......+..|.| .|+++++
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~-----~--------~s~~g~~~~~~sGl~~~~~D~~grL~ 80 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VID-----G--------ASSNGDGEQQMSGLSLLTHDNSKRLF 80 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCT-----T--------TCCSSCCSEEEEEEEESSSSSCCEEE
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecC-----C--------ccccCCCcceeeEEEEeccCCCCcEE
Confidence 346889886665666665789999999986644321 100 0 00 011224689999 6898888
Q ss_pred EEEe-------------CCCeEEEEEec---CCccceeeeeeecC-----------CCCeeEEEEecCCCceEEEEEcCC
Q 001184 425 GVAF-------------TKHLIHLYTYQ---GSNDLCQSLEIDAH-----------VGGVNDLAFSYPNKQLCIVTCGDD 477 (1130)
Q Consensus 425 as~~-------------~d~~i~vwd~~---~~~~~~~~~~~~~h-----------~~~V~~i~~s~d~~~l~l~s~s~d 477 (1130)
++.. .+..|..||+. +++.+... .+... .....+++..++|+ ..++++.-
T Consensus 81 vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn--aYVt~s~~ 157 (334)
T 2p9w_A 81 AVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQDEFEKKAGKRPFGVVQSAQDRDGN--SYVAFALG 157 (334)
T ss_dssp EEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHHHHHHHHHSSCCEEEEEEEECTTSC--EEEEEEES
T ss_pred EEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEe-cCccccccccccccccccCCceeEECCCCC--EEEeCCCC
Confidence 7643 26779999999 77654322 22211 12488999999999 77888877
Q ss_pred -CcEEEEecCCCeeeEecC------CCcCEEEEeecccCCccEEEEEecCCcEEEEEccCC
Q 001184 478 -KLIRVWDLSGRKLFQFEG------HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV 531 (1130)
Q Consensus 478 -~~v~iwd~~~~~~~~~~~------h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~ 531 (1130)
+.|...+..|+.+..+.. .....+.++++| ++..|+.....|.+..+|+...
T Consensus 158 ~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~p--dg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 158 MPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDP--HSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp SCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEET--TTTEEEEESSSSSEEEEECSSS
T ss_pred CCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeC--CCCEEEEEcCCCeEEEEcCCCC
Confidence 888888877765544321 122356888865 4567777766999999998843
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.055 Score=59.08 Aligned_cols=108 Identities=15% Similarity=0.117 Sum_probs=62.3
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC---CCE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD---GNF 423 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd---g~~ 423 (1130)
-...+.++|.|||+ ++++ ..+|.|.+++ +++.... .++ . +..........|+|+|| +..
T Consensus 30 l~~P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~~~~-----~~~-------~--v~~~g~~~p~gia~~pdf~~~g~ 91 (352)
T 2ism_A 30 LEVPWALAFLPDGG-MLIA-ERPGRIRLFR--EGRLSTY-----AEL-------S--VYHRGESGLLGLALHPRFPQEPY 91 (352)
T ss_dssp CSCEEEEEECTTSC-EEEE-ETTTEEEEEE--TTEEEEE-----EEC-------C--CCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCccEe-----ecc-------e--EeecCCCCceeEEECCCCCCCCE
Confidence 34678999999997 4554 5669999998 4432110 000 0 11223456889999998 555
Q ss_pred EEEEeC-C-----CeEEEEEecCCccc--eeee-eee---cCCCCeeEEEEecCCCceEEEEE
Q 001184 424 IGVAFT-K-----HLIHLYTYQGSNDL--CQSL-EID---AHVGGVNDLAFSYPNKQLCIVTC 474 (1130)
Q Consensus 424 las~~~-d-----~~i~vwd~~~~~~~--~~~~-~~~---~h~~~V~~i~~s~d~~~l~l~s~ 474 (1130)
|.++.. + ..|..|+...+..- +... .+. +.......++|.|||. +.++.
T Consensus 92 lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~ 152 (352)
T 2ism_A 92 VYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM--LYVTT 152 (352)
T ss_dssp EEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC--EEEEC
T ss_pred EEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC--EEEEE
Confidence 544432 2 57888887754211 1111 122 1112346899999996 44543
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.055 Score=59.09 Aligned_cols=100 Identities=15% Similarity=0.191 Sum_probs=62.5
Q ss_pred ceeEEEEecCCCEEEEEeCCeEEEEECCCcee--EEEEe---CCCCCeEEEEEeCC---CCcEEEEEeCC-----CcEEE
Q 001184 835 VVPCVALSKNDSYVMSAGGGKVSLFNMMNFKV--MTTFM---SPPPASTFLAFHPQ---DNNIIAIGMED-----STIQI 901 (1130)
Q Consensus 835 ~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~--~~~~~---~~~~~i~~l~~sp~---~~~~lasg~~d-----g~v~i 901 (1130)
....++|.|||+++++-.+|.|++++ +++. +..+. ........++++|+ ++.+.++-..+ +.|..
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 46789999999977776689999998 3432 22221 12356889999993 25554444432 67888
Q ss_pred EEeecCe-----E-EEEEe---cCCCCeeEEEEccCCCeEEEEe
Q 001184 902 YNVRVDE-----V-KTKLK---GHQKHITGLAFSTNLNILVSSG 936 (1130)
Q Consensus 902 wd~~~~~-----~-~~~l~---~h~~~V~~l~~s~dg~~L~s~s 936 (1130)
|+...+. . +..+. +.......|+|.|||.+.++.+
T Consensus 110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 8876431 1 22233 1111236899999997666644
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.1 Score=56.94 Aligned_cols=228 Identities=12% Similarity=0.099 Sum_probs=123.4
Q ss_pred CceeEEEEecCCCEEEEEeCCeEEEEECCCce-eEEEEe---CCCCCeEEEEEeCC---CCcEEEEEeC---C----CcE
Q 001184 834 DVVPCVALSKNDSYVMSAGGGKVSLFNMMNFK-VMTTFM---SPPPASTFLAFHPQ---DNNIIAIGME---D----STI 899 (1130)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~-~~~~~~---~~~~~i~~l~~sp~---~~~~lasg~~---d----g~v 899 (1130)
.....++|.|||+++++-.+|.|++++. +++ .+..+. ........|+++|+ ++.+.++-.. + +.|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 3567899999999777766899999974 444 222221 12345889999994 3555544432 3 567
Q ss_pred EEEEeecC-------eEE-EEEec-CCCCeeEEEEccCCCeEEEEeCC-------------CcEEEEECCCCccc-----
Q 001184 900 QIYNVRVD-------EVK-TKLKG-HQKHITGLAFSTNLNILVSSGSD-------------AQLIFWNTDTWEKR----- 952 (1130)
Q Consensus 900 ~iwd~~~~-------~~~-~~l~~-h~~~V~~l~~s~dg~~L~s~s~D-------------g~i~vwd~~~~~~~----- 952 (1130)
..|+.... +.+ ..+.. .......|+|.|||.++++.+.. |.|.-.+.+..-..
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~ 187 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFP 187 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSST
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCC
Confidence 77776643 111 22321 11124679999999877765432 33444444321000
Q ss_pred ceeeEeccCCCCCCCeEEEEEcC-CCcEEEEEc--CC--cEEEEECCCce------------------eeeeeecCCCCC
Q 001184 953 KSIAIQLPAGKLPVGETRVQFHS-DQVRLLVNH--ET--QLAIYDGSKME------------------CIRQWVPQDVLS 1009 (1130)
Q Consensus 953 ~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~--d~--~i~v~d~~~~~------------------~~~~~~~~~~~~ 1009 (1130)
...... .+. .....++|+| +|.+.++.. +. .|.+.. .+. .+..+.. ..
T Consensus 188 ~~~i~a--~G~--rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~---~~ 258 (354)
T 3a9g_A 188 NSPIWS--YGH--RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGS---ET 258 (354)
T ss_dssp TCCEEE--ECC--SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTT---CC
T ss_pred CCcEEE--Ecc--CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCC---CC
Confidence 000000 011 2356799999 677666632 21 233322 221 1111101 12
Q ss_pred CCeEEEEEC-------CCCCEEEEEeCCCcEEEEeCCCc-ccc--cccCCCcccccCCCCCceeeeEEEEEcCCCCCEEE
Q 001184 1010 SPISSAAYS-------CNSQLIYATFTDGSIGVFDADSL-RLR--CRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLA 1079 (1130)
Q Consensus 1010 ~~v~~v~~s-------~dg~~l~t~~~Dg~i~vwd~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 1079 (1130)
.....++|. .+|.++++....+.|...++... +.. ..+. . +..-.+..+++.| |+.+++
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-----~-----~~~~rp~~v~~~p-DG~lyv 327 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF-----K-----NVFGRLRDVVIDD-DGGILI 327 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC-----T-----TTSCCEEEEEECT-TSCEEE
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec-----c-----CCCCCeeEEEECC-CCcEEE
Confidence 467788884 57777777667788888888753 221 1111 0 1123456788888 466666
Q ss_pred EEe
Q 001184 1080 VGL 1082 (1130)
Q Consensus 1080 s~~ 1082 (1130)
+..
T Consensus 328 ~~~ 330 (354)
T 3a9g_A 328 STS 330 (354)
T ss_dssp EEC
T ss_pred EEe
Confidence 654
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.037 Score=59.28 Aligned_cols=236 Identities=11% Similarity=0.057 Sum_probs=123.5
Q ss_pred CEEEEEe---CCeEEEEECCCceeEEEEeCCCCCe-EEEEEeCCCCcEEEEEeCC----CcEEEEEeecCeEEEEEecCC
Q 001184 846 SYVMSAG---GGKVSLFNMMNFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGMED----STIQIYNVRVDEVKTKLKGHQ 917 (1130)
Q Consensus 846 ~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i-~~l~~sp~~~~~lasg~~d----g~v~iwd~~~~~~~~~l~~h~ 917 (1130)
.+++.|+ ...+.+||..+.+-...-....... .+++. - ++.+++.|+.+ ..+.+||..+.+-...-....
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF-W-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE-E-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE-E-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 3455555 3569999998865433211111111 12222 2 66788888765 568899988765332211111
Q ss_pred CCeeEEEEccCCCeEEEEeCC------CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEc-------
Q 001184 918 KHITGLAFSTNLNILVSSGSD------AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH------- 984 (1130)
Q Consensus 918 ~~V~~l~~s~dg~~L~s~s~D------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~------- 984 (1130)
......+..-+++.++.|+.+ ..+.+||..+.+-..... .+... ..... +. -++++++.+.
T Consensus 91 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~r--~~~~~-~~-~~~~iyv~GG~~~~~~~ 164 (306)
T 3ii7_A 91 PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPS--MLTQR--CSHGM-VE-ANGLIYVCGGSLGNNVS 164 (306)
T ss_dssp CCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECC--CSSCC--BSCEE-EE-ETTEEEEECCEESCTTT
T ss_pred cccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCC--CcCCc--ceeEE-EE-ECCEEEEECCCCCCCCc
Confidence 111111222367777777765 458899988855322211 11111 11122 22 2555555531
Q ss_pred ---CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCC-----CcEEEEeCCCcccccccCCCcccccC
Q 001184 985 ---ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLRLRCRIAPSAYMSQA 1056 (1130)
Q Consensus 985 ---d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~ 1056 (1130)
-..+.+||..+.+-...-..... ...-.++. -++++++.|+.+ ..+.+||..+.+....-.... +.
T Consensus 165 ~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r- 238 (306)
T 3ii7_A 165 GRVLNSCEVYDPATETWTELCPMIEA-RKNHGLVF--VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPW--KG- 238 (306)
T ss_dssp CEECCCEEEEETTTTEEEEECCCSSC-CBSCEEEE--ETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSC--CB-
T ss_pred ccccceEEEeCCCCCeEEECCCccch-hhcceEEE--ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCC--Cc-
Confidence 35588999988754433211111 11112222 267788877753 458999998876443211111 11
Q ss_pred CCCCceeeeEEEEEcCCCCCEEEEEeCC-----CcEEEEeCCCCccCCcccccCC
Q 001184 1057 SPNSQTVFPLVVTSHPQEPNQLAVGLTD-----GSVKVIEPSETERKWGVAVPVD 1106 (1130)
Q Consensus 1057 ~~~~~~~~~~~~~~~~~~~~~l~s~~~D-----g~v~vW~~~~~~~~w~~~~p~~ 1106 (1130)
.++ .. +.. ++.+++.|+.+ ..+.+||+.+.+ |....+.+
T Consensus 239 --~~~---~~-~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~ 282 (306)
T 3ii7_A 239 --VTV---KC-AAV---GSIVYVLAGFQGVGRLGHILEYNTETDK--WVANSKVR 282 (306)
T ss_dssp --SCC---EE-EEE---TTEEEEEECBCSSSBCCEEEEEETTTTE--EEEEEEEE
T ss_pred --cce---eE-EEE---CCEEEEEeCcCCCeeeeeEEEEcCCCCe--EEeCCCcc
Confidence 111 11 222 46788888865 457888887765 98766554
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.072 Score=56.78 Aligned_cols=232 Identities=15% Similarity=0.156 Sum_probs=120.5
Q ss_pred CCEEEEEe-C----CeEEEEECCCceeEEEEeCCCCCe-EEEEEeCCCCcEEEEEeCCC-----cEEEEEeecCeEEEE-
Q 001184 845 DSYVMSAG-G----GKVSLFNMMNFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGMEDS-----TIQIYNVRVDEVKTK- 912 (1130)
Q Consensus 845 g~~la~~~-d----g~i~iwd~~~~~~~~~~~~~~~~i-~~l~~sp~~~~~lasg~~dg-----~v~iwd~~~~~~~~~- 912 (1130)
+.+++.|+ + ..+.+||+.+.+-...-....... .+++. - ++.+++.|+.++ .+.+||..+.+-...
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY-M-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-E-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE-E-CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 34455554 2 458899988765433211111111 22222 2 567888887653 588899887653322
Q ss_pred -EecCCCCeeEEEEccCCCeEEEEeCCC-----cEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-c-
Q 001184 913 -LKGHQKHITGLAFSTNLNILVSSGSDA-----QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-H- 984 (1130)
Q Consensus 913 -l~~h~~~V~~l~~s~dg~~L~s~s~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~- 984 (1130)
+......-..+. -+++.++.|+.++ .+.+||+.+.+-..... .+... ... .++. -++++++.+ .
T Consensus 94 ~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~r--~~~-~~~~-~~~~iyv~GG~~ 165 (302)
T 2xn4_A 94 NMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAP--MNTRR--SSV-GVGV-VGGLLYAVGGYD 165 (302)
T ss_dssp CCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECC--CSSCC--BSC-EEEE-ETTEEEEECCEE
T ss_pred CCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCC--CCCcc--cCc-eEEE-ECCEEEEEeCCC
Confidence 221111112222 3677777777653 47788888754322211 11111 111 2222 255555553 1
Q ss_pred ------CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCC-----CcEEEEeCCCcccccccCCCccc
Q 001184 985 ------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLRLRCRIAPSAYM 1053 (1130)
Q Consensus 985 ------d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D-----g~i~vwd~~~~~~~~~~~~~~~~ 1053 (1130)
-..+.+||..+.+-...-..... .....++. -++++++.|+.+ ..+.+||..+.+....-....
T Consensus 166 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~-- 240 (302)
T 2xn4_A 166 VASRQCLSTVECYNATTNEWTYIAEMSTR-RSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNM-- 240 (302)
T ss_dssp TTTTEECCCEEEEETTTTEEEEECCCSSC-CBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSS--
T ss_pred CCCCccccEEEEEeCCCCcEEECCCCccc-cccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCC--
Confidence 24588999987654433211111 11122222 267888888754 368999998876543221111
Q ss_pred ccCCCCCceeeeEEEEEcCCCCCEEEEEeCCC-----cEEEEeCCCCccCCcccc
Q 001184 1054 SQASPNSQTVFPLVVTSHPQEPNQLAVGLTDG-----SVKVIEPSETERKWGVAV 1103 (1130)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg-----~v~vW~~~~~~~~w~~~~ 1103 (1130)
+. ..+ .+ +.. ++.+++.|+.++ .+.+||+.+.+ |....
T Consensus 241 ~r---~~~---~~-~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~ 283 (302)
T 2xn4_A 241 CR---RNA---GV-CAV---NGLLYVVGGDDGSCNLASVEYYNPTTDK--WTVVS 283 (302)
T ss_dssp CC---BSC---EE-EEE---TTEEEEECCBCSSSBCCCEEEEETTTTE--EEECS
T ss_pred cc---ccC---eE-EEE---CCEEEEECCcCCCcccccEEEEcCCCCe--EEECC
Confidence 11 112 11 221 467888888764 48899998775 87654
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.019 Score=61.45 Aligned_cols=227 Identities=13% Similarity=0.076 Sum_probs=118.1
Q ss_pred CeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCC-----CcEEEEEeecCe-----EEEEEecCCCCeeEE
Q 001184 854 GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED-----STIQIYNVRVDE-----VKTKLKGHQKHITGL 923 (1130)
Q Consensus 854 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~d-----g~v~iwd~~~~~-----~~~~l~~h~~~V~~l 923 (1130)
..+.+||..+.+-...-..........+..- ++.+++.|+.+ ..+.+||..+.+ .+..+......-..+
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~ 109 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSL-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGAT 109 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEE-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEE
Confidence 3589999887654332111111111122223 56788888765 368899987654 222222211111222
Q ss_pred EEccCCCeEEEEeCC-----CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-c-----CCcEEEEE
Q 001184 924 AFSTNLNILVSSGSD-----AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-H-----ETQLAIYD 992 (1130)
Q Consensus 924 ~~s~dg~~L~s~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~-----d~~i~v~d 992 (1130)
. .+++.++.++.+ ..+.+||+.+.+-..... .+... .....+. -++++++.+ . ...+.+||
T Consensus 110 ~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~r--~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d 181 (301)
T 2vpj_A 110 T--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGD--MQTAR--EGAGLVV--ASGVIYCLGGYDGLNILNSVEKYD 181 (301)
T ss_dssp E--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEE--CSSCC--BSCEEEE--ETTEEEEECCBCSSCBCCCEEEEE
T ss_pred E--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCC--CCCCc--ccceEEE--ECCEEEEECCCCCCcccceEEEEe
Confidence 2 266777777654 358889988755433221 22111 1122222 256665553 2 35689999
Q ss_pred CCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCC-----CcEEEEeCCCcccccccCCCcccccCCCCCceeeeEE
Q 001184 993 GSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLV 1067 (1130)
Q Consensus 993 ~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1130)
..+.+-...-..... .....++. -++++++.|+.+ ..+.+||..+.+....-.... +. ..+ ..
T Consensus 182 ~~~~~W~~~~~~p~~-r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~--~r---~~~---~~- 249 (301)
T 2vpj_A 182 PHTGHWTNVTPMATK-RSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTT--PR---CYV---GA- 249 (301)
T ss_dssp TTTTEEEEECCCSSC-CBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSS--CC---BSC---EE-
T ss_pred CCCCcEEeCCCCCcc-cccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCC--cc---cce---eE-
Confidence 987665433211111 11122222 367788888764 468999998876543221111 11 112 11
Q ss_pred EEEcCCCCCEEEEEeCCC-----cEEEEeCCCCccCCcccccCC
Q 001184 1068 VTSHPQEPNQLAVGLTDG-----SVKVIEPSETERKWGVAVPVD 1106 (1130)
Q Consensus 1068 ~~~~~~~~~~l~s~~~Dg-----~v~vW~~~~~~~~w~~~~p~~ 1106 (1130)
+.. ++.+++.|+.++ .|.+||+.+.+ |....+.+
T Consensus 250 ~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~~ 288 (301)
T 2vpj_A 250 TVL---RGRLYAIAGYDGNSLLSSIECYDPIIDS--WEVVTSMG 288 (301)
T ss_dssp EEE---TTEEEEECCBCSSSBEEEEEEEETTTTE--EEEEEEEE
T ss_pred EEE---CCEEEEEcCcCCCcccccEEEEcCCCCe--EEEcCCCC
Confidence 222 467888888763 57788887755 87655443
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.039 Score=59.68 Aligned_cols=150 Identities=10% Similarity=0.124 Sum_probs=104.4
Q ss_pred EEEEecCCCEEEEEeCCeEEEEECCCceeEEEEeCC----CCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCe-----
Q 001184 838 CVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSP----PPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE----- 908 (1130)
Q Consensus 838 ~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~----- 908 (1130)
......+|..++.+.++.||.-++......+.+... ...|..+..+| +|.+||..+. ..|.|-.+..+.
T Consensus 25 ~~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g~-~~V~Vv~LP~~~~~~~~ 102 (452)
T 3pbp_A 25 YIFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFND-NEIFVMEVPWGYSNVED 102 (452)
T ss_dssp EEEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEECS-SEEEEEECCTTCSCCCC
T ss_pred EEEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEecC-CeEEEEEecCccccCcc
Confidence 345677899999999999999998855556666644 33688999999 8999998854 579998887321
Q ss_pred -------EEEEEec------CCCCeeEEEEccC---CCeEEEEeCCCcEEEEECCCCcccceeeEeccC-----CCCCCC
Q 001184 909 -------VKTKLKG------HQKHITGLAFSTN---LNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPA-----GKLPVG 967 (1130)
Q Consensus 909 -------~~~~l~~------h~~~V~~l~~s~d---g~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~-----~~~~~~ 967 (1130)
....+.- ...+|..+.|+|- +..|++-..|+.|++||+........ .+.... ......
T Consensus 103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~e 181 (452)
T 3pbp_A 103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVND 181 (452)
T ss_dssp HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCC
T ss_pred cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccce
Confidence 1122321 3577999999996 46899999999999999997432222 111111 111167
Q ss_pred eEEEEEcCCCcEEEE-E--cCCcEEE
Q 001184 968 ETRVQFHSDQVRLLV-N--HETQLAI 990 (1130)
Q Consensus 968 v~~~~~s~d~~~l~~-~--~d~~i~v 990 (1130)
+.+++|.+++-.|.+ + ..|.|+-
T Consensus 182 v~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 182 ITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp EEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred EEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 889999998876665 3 4455553
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.5 Score=51.40 Aligned_cols=111 Identities=14% Similarity=0.181 Sum_probs=59.1
Q ss_pred CCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC---CCEE
Q 001184 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD---GNFI 424 (1130)
Q Consensus 348 ~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd---g~~l 424 (1130)
...+.++|.|+|+++++ +...|.|++++.. +.... .+. ++ . .+..........++|+|| +.+|
T Consensus 18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~--~~~--~~-------~-~v~~~g~~g~~gia~~pdf~~~g~l 83 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSA--PLS--GV-------P-DVWAHGQGGLLDVVLAPDFAQSRRI 83 (353)
T ss_dssp SSEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECC--CCB--SC-------C-CCCCSTTCSEEEEEECTTHHHHCEE
T ss_pred CCcEEEEEcCCCCEEEE-EeCCceEEEEeCC-Cceee--Eec--CC-------c-ccccCCCCCceeEEECCCCCCCCEE
Confidence 46789999999984344 4567999999854 33211 000 00 0 012223456789999996 4444
Q ss_pred EEE-eC-------CCeEEEEEecCCc-cceeee----eee---cCCCCeeEEEEecCCCceEEEEE
Q 001184 425 GVA-FT-------KHLIHLYTYQGSN-DLCQSL----EID---AHVGGVNDLAFSYPNKQLCIVTC 474 (1130)
Q Consensus 425 as~-~~-------d~~i~vwd~~~~~-~~~~~~----~~~---~h~~~V~~i~~s~d~~~l~l~s~ 474 (1130)
..+ +. ...|..|++..+. .+.... .+. .....-..++|.|||. +.++.
T Consensus 84 Yv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~ 147 (353)
T 2g8s_A 84 WLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY--LFIAL 147 (353)
T ss_dssp EEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE--EEEEE
T ss_pred EEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc--EEEEE
Confidence 443 22 2356667765431 111111 111 1111246799999996 44443
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.3 Score=53.13 Aligned_cols=242 Identities=10% Similarity=0.069 Sum_probs=123.9
Q ss_pred ceeEEEEecCCC-EEEEEeCCeEEEEECCCceeEEEEe-------CCCCCeEEEEEeCC---CCcEEEEEeC-------C
Q 001184 835 VVPCVALSKNDS-YVMSAGGGKVSLFNMMNFKVMTTFM-------SPPPASTFLAFHPQ---DNNIIAIGME-------D 896 (1130)
Q Consensus 835 ~i~~l~~s~dg~-~la~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~l~~sp~---~~~~lasg~~-------d 896 (1130)
....|+|.|||+ ++++-..|.|++++... .....+. ........++++|+ ++.+.++-.. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 457899999999 77665689999998643 2211111 12345689999994 3554444332 2
Q ss_pred CcEEEEEeecC--e--EEEE-Eec------CCCCeeEEEEccCCCeEEEEeCC-------------CcEEEEECCCCccc
Q 001184 897 STIQIYNVRVD--E--VKTK-LKG------HQKHITGLAFSTNLNILVSSGSD-------------AQLIFWNTDTWEKR 952 (1130)
Q Consensus 897 g~v~iwd~~~~--~--~~~~-l~~------h~~~V~~l~~s~dg~~L~s~s~D-------------g~i~vwd~~~~~~~ 952 (1130)
..|..|++..+ . .... +.. ....-..|+|.|||.+.++.+.. |.|.-.+.+..-..
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 35666666432 1 1111 111 01113579999999666665432 34555555431000
Q ss_pred ----------ceeeEeccCCCCCCCeEEEEEcC-CCcEEEEEc--CCcEEEEECCCceeee-------------------
Q 001184 953 ----------KSIAIQLPAGKLPVGETRVQFHS-DQVRLLVNH--ETQLAIYDGSKMECIR------------------- 1000 (1130)
Q Consensus 953 ----------~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~--d~~i~v~d~~~~~~~~------------------- 1000 (1130)
...... .+. .....++|+| +|.+.++.. ++.=.|.-+..+.-..
T Consensus 178 ~npf~~~~~~~~~i~a--~G~--rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~ 253 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWS--YGI--RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK 253 (353)
T ss_dssp TCTTTTSTTSCTTEEE--ECC--SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred CCCCcCCCCCCccEEE--EcC--cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence 000000 011 3467899999 676666532 2222232222221100
Q ss_pred -----eeecC---CCCCCCeEEEEECC-------CCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeee
Q 001184 1001 -----QWVPQ---DVLSSPISSAAYSC-------NSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFP 1065 (1130)
Q Consensus 1001 -----~~~~~---~~~~~~v~~v~~s~-------dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1130)
.+... -.+......++|.. +|.++++....+.|...+++.++...... +.. .....+
T Consensus 254 ~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~-----~~~~rp 325 (353)
T 2g8s_A 254 GEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILT-----DRGQRI 325 (353)
T ss_dssp BSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESG-----GGCCCE
T ss_pred CCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---ccc-----CCCCce
Confidence 00000 00123567778863 57777776677888888877654322111 110 111246
Q ss_pred EEEEEcCCCCCEEEEEe-CCCcEEEEeC
Q 001184 1066 LVVTSHPQEPNQLAVGL-TDGSVKVIEP 1092 (1130)
Q Consensus 1066 ~~~~~~~~~~~~l~s~~-~Dg~v~vW~~ 1092 (1130)
..+++.| |+.++++.. .+| +||++
T Consensus 326 ~~v~~~p-dG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 326 RDVRTGP-DGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp EEEEECT-TSCEEEEECSTTE--EEEEE
T ss_pred eEEEECC-CCcEEEEEeCCCC--EEEEE
Confidence 6788888 466666544 344 45665
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.11 Score=55.39 Aligned_cols=188 Identities=11% Similarity=0.039 Sum_probs=99.1
Q ss_pred cCCCEEEEEe-C-----CeEEEEECCCce---eEEEEeCCCCCe-EEEEEeCCCCcEEEEEeCCC-----cEEEEEeecC
Q 001184 843 KNDSYVMSAG-G-----GKVSLFNMMNFK---VMTTFMSPPPAS-TFLAFHPQDNNIIAIGMEDS-----TIQIYNVRVD 907 (1130)
Q Consensus 843 ~dg~~la~~~-d-----g~i~iwd~~~~~---~~~~~~~~~~~i-~~l~~sp~~~~~lasg~~dg-----~v~iwd~~~~ 907 (1130)
.++++++.|+ + ..+.+||..+.+ -...-....... .+++. - ++++++.|+.++ .+.+||..+.
T Consensus 61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~~ 138 (301)
T 2vpj_A 61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT-L-GDMIYVSGGFDGSRRHTSMERYDPNID 138 (301)
T ss_dssp ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE-E-TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE-E-CCEEEEEcccCCCcccceEEEEcCCCC
Confidence 4667777765 3 359999988765 322211111111 22222 2 567888887543 5888998776
Q ss_pred eEE--EEEecCCCCeeEEEEccCCCeEEEEeCC-----CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEE
Q 001184 908 EVK--TKLKGHQKHITGLAFSTNLNILVSSGSD-----AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRL 980 (1130)
Q Consensus 908 ~~~--~~l~~h~~~V~~l~~s~dg~~L~s~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 980 (1130)
+-. ..+......-.+ ..-+++.++.|+.+ ..+.+||+.+.+-..... .+... .....+. -++.++
T Consensus 139 ~W~~~~~~p~~r~~~~~--~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~r--~~~~~~~--~~~~i~ 210 (301)
T 2vpj_A 139 QWSMLGDMQTAREGAGL--VVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTP--MATKR--SGAGVAL--LNDHIY 210 (301)
T ss_dssp EEEEEEECSSCCBSCEE--EEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECC--CSSCC--BSCEEEE--ETTEEE
T ss_pred eEEECCCCCCCcccceE--EEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCC--CCccc--ccceEEE--ECCEEE
Confidence 432 222211111122 22367777777754 458899988754332211 11111 1112222 255555
Q ss_pred EEE-c-----CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCC-----CcEEEEeCCCccc
Q 001184 981 LVN-H-----ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLRL 1043 (1130)
Q Consensus 981 ~~~-~-----d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D-----g~i~vwd~~~~~~ 1043 (1130)
+.+ . ...+.+||+.+.+-...-..... .....++. -++++++.|+.+ ..+.+||..+.+.
T Consensus 211 v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 211 VVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP-RCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp EECCBCSSSBCCCEEEEETTTTEEEEECCCSSC-CBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred EEeCCCCCcccceEEEEeCCCCcEEECCCCCCc-ccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence 553 2 35699999987765433221111 11222222 377888888765 3578889887654
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.095 Score=56.05 Aligned_cols=239 Identities=14% Similarity=0.116 Sum_probs=124.1
Q ss_pred ecCCCEEEEEe-C----CeEEEEECCCceeEEEEeCCCCCe-EEEEEeCCCCcEEEEEeC----C-----CcEEEEEeec
Q 001184 842 SKNDSYVMSAG-G----GKVSLFNMMNFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGME----D-----STIQIYNVRV 906 (1130)
Q Consensus 842 s~dg~~la~~~-d----g~i~iwd~~~~~~~~~~~~~~~~i-~~l~~sp~~~~~lasg~~----d-----g~v~iwd~~~ 906 (1130)
.-++.+++.|+ + ..+.+||..+.+-...-....... .+++. - ++.+++.|+. + ..+.+||..+
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-V-GGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-E-CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 34566666665 2 458999998765443211111111 12222 2 5677777776 2 3588889877
Q ss_pred CeEEEE--EecCCCCeeEEEEccCCCeEEEEeCC-----CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcE
Q 001184 907 DEVKTK--LKGHQKHITGLAFSTNLNILVSSGSD-----AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVR 979 (1130)
Q Consensus 907 ~~~~~~--l~~h~~~V~~l~~s~dg~~L~s~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~ 979 (1130)
.+-... +......-..+.+ +++.++.|+.+ ..+.+||+.+.+-..... .+... .....+.+ ++.+
T Consensus 100 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~r--~~~~~~~~--~~~i 171 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAP--MLTRR--IGVGVAVL--NRLL 171 (308)
T ss_dssp TEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCC--CSSCC--BSCEEEEE--TTEE
T ss_pred CeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCC--CCccc--cceEEEEE--CCEE
Confidence 653222 1111111122222 66677776643 358889988754322211 11111 11222222 5555
Q ss_pred EEEE-c-----CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCC-----CcEEEEeCCCcccccccC
Q 001184 980 LLVN-H-----ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLRLRCRIA 1048 (1130)
Q Consensus 980 l~~~-~-----d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D-----g~i~vwd~~~~~~~~~~~ 1048 (1130)
++.+ . ...+.+||+.+.+-...-..... ...-.++.+ ++++++.|+.+ ..+.+||+.+.+....-.
T Consensus 172 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 248 (308)
T 1zgk_A 172 YAVGGFDGTNRLNSAECYYPERNEWRMITAMNTI-RSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP 248 (308)
T ss_dssp EEECCBCSSCBCCCEEEEETTTTEEEECCCCSSC-CBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC
T ss_pred EEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCc-cccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCC
Confidence 5553 2 25689999987654332111110 112222332 77888888754 569999998876543221
Q ss_pred CCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCC-----cEEEEeCCCCccCCcccccCCC
Q 001184 1049 PSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDG-----SVKVIEPSETERKWGVAVPVDN 1107 (1130)
Q Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg-----~v~vW~~~~~~~~w~~~~p~~~ 1107 (1130)
... +. ..+ .+.+. ++.+++.|+.++ .+.+||+.+.+ |....+.+.
T Consensus 249 ~p~--~r---~~~---~~~~~----~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~ 298 (308)
T 1zgk_A 249 MKH--RR---SAL---GITVH----QGRIYVLGGYDGHTFLDSVECYDPDTDT--WSEVTRMTS 298 (308)
T ss_dssp CSS--CC---BSC---EEEEE----TTEEEEECCBCSSCBCCEEEEEETTTTE--EEEEEECSS
T ss_pred CCC--Cc---cce---EEEEE----CCEEEEEcCcCCCcccceEEEEcCCCCE--EeecCCCCC
Confidence 110 11 111 11121 467888888643 47788887765 977655543
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.54 Score=50.61 Aligned_cols=194 Identities=11% Similarity=0.136 Sum_probs=114.5
Q ss_pred CceeEEEEecCCCEEEEE-------------eCCeEEEEECCC--ceeE-EEEeC-----CCCCeEEEEEeCC-CC--cE
Q 001184 834 DVVPCVALSKNDSYVMSA-------------GGGKVSLFNMMN--FKVM-TTFMS-----PPPASTFLAFHPQ-DN--NI 889 (1130)
Q Consensus 834 ~~i~~l~~s~dg~~la~~-------------~dg~i~iwd~~~--~~~~-~~~~~-----~~~~i~~l~~sp~-~~--~~ 889 (1130)
.....+++.++|..++++ .+|.|.++|..+ .+.. ..+.+ ..-....+.+.++ ++ .+
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 345567788888777775 378999999873 2221 12222 1235677777662 23 34
Q ss_pred EEEEeC--CCcEEEEEeecC----eEEEEEecCC-CCeeEEEEccCCCeEEEEeC---C------------CcEEEEECC
Q 001184 890 IAIGME--DSTIQIYNVRVD----EVKTKLKGHQ-KHITGLAFSTNLNILVSSGS---D------------AQLIFWNTD 947 (1130)
Q Consensus 890 lasg~~--dg~v~iwd~~~~----~~~~~l~~h~-~~V~~l~~s~dg~~L~s~s~---D------------g~i~vwd~~ 947 (1130)
+++-.. +.+|.+|++..+ ..+..+.+.. ...+.+++.++|.+.++... | ..=.+|.++
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 444333 567889888753 2233444322 34789999999998887651 1 122344433
Q ss_pred CCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE--cCCcEEEEECCC-cee--eeeeecCCCCCCCeEEEEECC-CC
Q 001184 948 TWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN--HETQLAIYDGSK-MEC--IRQWVPQDVLSSPISSAAYSC-NS 1021 (1130)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~--~d~~i~v~d~~~-~~~--~~~~~~~~~~~~~v~~v~~s~-dg 1021 (1130)
.++.. ...... .....++||||++.|+++ ..+.|..|++.. ++. .+.+ .. ......+++.+ +|
T Consensus 210 ~~~~~-~~~~~l------~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~---~g~PDGi~vD~e~G 278 (355)
T 3sre_A 210 PNDVR-VVAEGF------DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SF---DTLVDNISVDPVTG 278 (355)
T ss_dssp TTCCE-EEEEEE------SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-EC---SSEEEEEEECTTTC
T ss_pred CCeEE-EeecCC------cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eC---CCCCceEEEeCCCC
Confidence 33211 111111 345789999999988874 478899999863 332 2223 11 35678899999 59
Q ss_pred CEEEEEeCC-CcEEEEeC
Q 001184 1022 QLIYATFTD-GSIGVFDA 1038 (1130)
Q Consensus 1022 ~~l~t~~~D-g~i~vwd~ 1038 (1130)
.+.+++..+ +.|..|+-
T Consensus 279 ~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 279 DLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp CEEEEEESCHHHHHSCCT
T ss_pred cEEEEecCCceEEEEECC
Confidence 987766544 34444443
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.23 Score=52.86 Aligned_cols=192 Identities=14% Similarity=0.112 Sum_probs=101.1
Q ss_pred cCCCEEEEEe-C----CeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCC------CcEEEEEeecCeEEE
Q 001184 843 KNDSYVMSAG-G----GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED------STIQIYNVRVDEVKT 911 (1130)
Q Consensus 843 ~dg~~la~~~-d----g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~d------g~v~iwd~~~~~~~~ 911 (1130)
-++++++.|+ + ..+.+||..+.+-...-..........+..- ++++++.|+.+ ..+.+||..+.+-..
T Consensus 54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA-EGKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 3667777765 3 5689999988754433222222221122222 66788888765 458899988765332
Q ss_pred EEecCCCCeeEEEEccCCCeEEEEeC---------CCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE
Q 001184 912 KLKGHQKHITGLAFSTNLNILVSSGS---------DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1130)
Q Consensus 912 ~l~~h~~~V~~l~~s~dg~~L~s~s~---------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 982 (1130)
.-..........+..-+++.++.++. -..+.+||+.+.+-..... .+... .... ++.. ++++++.
T Consensus 133 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~r--~~~~-~~~~-~~~i~v~ 206 (306)
T 3ii7_A 133 KPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCP--MIEAR--KNHG-LVFV-KDKIFAV 206 (306)
T ss_dssp ECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECC--CSSCC--BSCE-EEEE-TTEEEEE
T ss_pred CCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCC--ccchh--hcce-EEEE-CCEEEEE
Confidence 21111111111112236666666654 3448899998854322211 11111 1112 2222 5555555
Q ss_pred E-c-----CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCC-----CcEEEEeCCCcccc
Q 001184 983 N-H-----ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLRLR 1044 (1130)
Q Consensus 983 ~-~-----d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D-----g~i~vwd~~~~~~~ 1044 (1130)
+ . -..+.+||+.+.+-...-.... ......++.+ ++++++.|+.+ ..+.+||..+.+..
T Consensus 207 GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 207 GGQNGLGGLDNVEYYDIKLNEWKMVSPMPW-KGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp CCEETTEEBCCEEEEETTTTEEEECCCCSC-CBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred eCCCCCCCCceEEEeeCCCCcEEECCCCCC-CccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 3 2 2568999998765433211111 1122233333 77888888854 46899999887644
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.49 E-value=1.2 Score=47.71 Aligned_cols=114 Identities=16% Similarity=0.100 Sum_probs=65.4
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC---CC
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD---GN 422 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd---g~ 422 (1130)
.-...+.++|.|||+ ++++--..|.|++++..+++......+ ..+..........|+|+|| +.
T Consensus 30 gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~-------------~~v~~~g~~GllGia~~Pdf~~~g 95 (347)
T 3das_A 30 GLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEV-------------PGVSPSGEGGLLGIALSPDYASDH 95 (347)
T ss_dssp CCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEEC-------------TTCCCBTTBSEEEEEECTTHHHHC
T ss_pred CCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeeccc-------------CceeecCCCCceeeEeccccccCC
Confidence 345789999999997 566654489999998766553210000 0022334567899999996 34
Q ss_pred EEEEE-e--CCCeEEEEEecCCc----c---ceeee-eee-cCCCCeeEEEEecCCCceEEEEEc
Q 001184 423 FIGVA-F--TKHLIHLYTYQGSN----D---LCQSL-EID-AHVGGVNDLAFSYPNKQLCIVTCG 475 (1130)
Q Consensus 423 ~las~-~--~d~~i~vwd~~~~~----~---~~~~~-~~~-~h~~~V~~i~~s~d~~~l~l~s~s 475 (1130)
+|... + .+..|.-|.+..+. . .+... .+. +....-..|+|.|||. +.++.+
T Consensus 96 ~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~G 158 (347)
T 3das_A 96 MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGTG 158 (347)
T ss_dssp EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEECB
T ss_pred EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEEC
Confidence 44332 2 34556666665421 1 11111 121 1112356799999997 555543
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.28 Score=52.54 Aligned_cols=228 Identities=15% Similarity=0.124 Sum_probs=116.6
Q ss_pred CCeEEEEECCCceeEE-EEeCCCCCeEEEEEeCCCCcEEEEEeC-----C------CcEEEEEeecCeEEEE--EecCCC
Q 001184 853 GGKVSLFNMMNFKVMT-TFMSPPPASTFLAFHPQDNNIIAIGME-----D------STIQIYNVRVDEVKTK--LKGHQK 918 (1130)
Q Consensus 853 dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~sp~~~~~lasg~~-----d------g~v~iwd~~~~~~~~~--l~~h~~ 918 (1130)
...+.+||..+.+-.. .+..+.......+... ++.+++.|+. . ..+.+||..+.+-... +.....
T Consensus 12 G~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 90 (315)
T 4asc_A 12 EEGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC 90 (315)
T ss_dssp TTEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE
T ss_pred CCceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh
Confidence 3679999998877543 1222223334444444 6778888874 1 1277888877653221 111111
Q ss_pred CeeEEEEccCCCeEEEEeCC--------CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-c-----
Q 001184 919 HITGLAFSTNLNILVSSGSD--------AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-H----- 984 (1130)
Q Consensus 919 ~V~~l~~s~dg~~L~s~s~D--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~----- 984 (1130)
.- +++. -+++.++.|+.+ ..+.+||..+.+-..... .+.. ..-.+++. -++++++.+ .
T Consensus 91 ~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~---r~~~~~~~-~~~~iyv~GG~~~~~~ 162 (315)
T 4asc_A 91 LF-GLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDP--LPYV---VYGHTVLS-HMDLVYVIGGKGSDRK 162 (315)
T ss_dssp SC-EEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCC--CSSC---CBSCEEEE-ETTEEEEECCBCTTSC
T ss_pred ce-eEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCC--CCCc---ccceeEEE-ECCEEEEEeCCCCCCc
Confidence 11 1222 256666666632 358899988754322211 1111 11112222 455555553 3
Q ss_pred -CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCC-----cEEEEeCCCcccccccCCCcccccCCC
Q 001184 985 -ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG-----SIGVFDADSLRLRCRIAPSAYMSQASP 1058 (1130)
Q Consensus 985 -d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~ 1058 (1130)
-..+.+||..+.+-...-..... ...-.++. -++++++.|+.++ .+.+||..+.+....-.... +.
T Consensus 163 ~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r--- 234 (315)
T 4asc_A 163 CLNKMCVYDPKKFEWKELAPMQTA-RSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQ--ER--- 234 (315)
T ss_dssp BCCCEEEEETTTTEEEECCCCSSC-CBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSS--CC---
T ss_pred ccceEEEEeCCCCeEEECCCCCCc-hhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCC--cc---
Confidence 24689999987654332211110 11112222 2778888888654 58899998876543321110 11
Q ss_pred CCceeeeEEEEEcCCCCCEEEEEeCCC--------------cEEEEeCCCCccCCcccccCC
Q 001184 1059 NSQTVFPLVVTSHPQEPNQLAVGLTDG--------------SVKVIEPSETERKWGVAVPVD 1106 (1130)
Q Consensus 1059 ~~~~~~~~~~~~~~~~~~~l~s~~~Dg--------------~v~vW~~~~~~~~w~~~~p~~ 1106 (1130)
..| .+ +.. ++.+++.|+.++ .+.+||+.+.+ |....|.+
T Consensus 235 ~~~---~~-~~~---~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~ 287 (315)
T 4asc_A 235 SSL---SL-VSL---VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK--WEGVLREI 287 (315)
T ss_dssp BSC---EE-EEE---TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE--EEEEESCS
T ss_pred cce---eE-EEE---CCEEEEECCccccCcCCccccccccCcEEEecCCCCh--hhhhccCC
Confidence 111 11 222 467888888743 36677776665 97764443
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=1.3 Score=47.48 Aligned_cols=199 Identities=14% Similarity=0.087 Sum_probs=110.2
Q ss_pred EEEEEEcCCCCEEEEEe------------CCCeEEEEEecCCccceeeeeeec-----CCCCeeEEEEec--CCCceEEE
Q 001184 412 VSRVAWSPDGNFIGVAF------------TKHLIHLYTYQGSNDLCQSLEIDA-----HVGGVNDLAFSY--PNKQLCIV 472 (1130)
Q Consensus 412 V~~v~~spdg~~las~~------------~d~~i~vwd~~~~~~~~~~~~~~~-----h~~~V~~i~~s~--d~~~l~l~ 472 (1130)
.-.++..|+|..+++++ .+|.|.++|.++.........+.+ .......+.+.+ ++...+++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 34566788886666552 689999999874321111223333 234677888776 45432334
Q ss_pred EEcC--CCcEEEEe--cCCCee---eEecCC-CcCEEEEeecccCCccEEEEEec---C------------CcEEEEEcc
Q 001184 473 TCGD--DKLIRVWD--LSGRKL---FQFEGH-EAPVYSVCPHQKENIHFIFSTAV---D------------GKIKAWLYD 529 (1130)
Q Consensus 473 s~s~--d~~v~iwd--~~~~~~---~~~~~h-~~~v~~~~~~~~~~~~~l~s~s~---d------------g~i~vwd~~ 529 (1130)
+-.. +.+|.+|+ ..+... ..+.+. -...+.+.+.+ +|.+.++... | ..=.+|.++
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~--~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG--PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE--TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC--CCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 4333 56888888 333332 333332 23567777754 4455555431 1 122334333
Q ss_pred CCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC-Cce--eEEEecccCceeEEEEEcC-CCCEEEE
Q 001184 530 NVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE-GAL--KRTYIGFRKKSAGVVQFDT-TRNRILA 605 (1130)
Q Consensus 530 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~ 605 (1130)
..+.. .+...-...+.++|+||++.++++.+ ..+.|+.|++.. +.. .+.+. .......+++.+ +|++.++
T Consensus 210 ~~~~~-~~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~~--~~g~PDGi~vD~e~G~lwva 283 (355)
T 3sre_A 210 PNDVR-VVAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLS--FDTLVDNISVDPVTGDLWVG 283 (355)
T ss_dssp TTCCE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEE--CSSEEEEEEECTTTCCEEEE
T ss_pred CCeEE-EeecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEEe--CCCCCceEEEeCCCCcEEEE
Confidence 33222 22222234789999999999888754 267899999853 332 22332 233566788998 5887776
Q ss_pred EeCC-CcEEEEeCC
Q 001184 606 AGED-NQIKFWDMD 618 (1130)
Q Consensus 606 ~~~d-g~i~vwd~~ 618 (1130)
+..+ +.|..|+..
T Consensus 284 ~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 284 CHPNGMRIFFYDAE 297 (355)
T ss_dssp EESCHHHHHSCCTT
T ss_pred ecCCceEEEEECCC
Confidence 6533 344444443
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.32 E-value=1.5 Score=46.93 Aligned_cols=201 Identities=11% Similarity=0.068 Sum_probs=107.9
Q ss_pred CCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEE--Ee----CCCCCeEEEEEeCC---CCcEEEEEe--CCCcEE
Q 001184 833 EDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTT--FM----SPPPASTFLAFHPQ---DNNIIAIGM--EDSTIQ 900 (1130)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~--~~----~~~~~i~~l~~sp~---~~~~lasg~--~dg~v~ 900 (1130)
-...+.|+|.|||+++++-. .|.|++++..+++.... +. ........|+++|+ ++.+.++-+ .++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 34568999999999888887 79999998766554221 21 22455789999993 344444322 344565
Q ss_pred EEEeecC----------eEE-EEEe---cCCCCeeEEEEccCCCeEEEEeC-------------CCcEEEEECCCCcccc
Q 001184 901 IYNVRVD----------EVK-TKLK---GHQKHITGLAFSTNLNILVSSGS-------------DAQLIFWNTDTWEKRK 953 (1130)
Q Consensus 901 iwd~~~~----------~~~-~~l~---~h~~~V~~l~~s~dg~~L~s~s~-------------Dg~i~vwd~~~~~~~~ 953 (1130)
-|.+..+ +.+ ..+. .|. -..|+|.|||.+.++.+. .|.|.-.+.+..-...
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~ 188 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHN--GGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG 188 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCC--CCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCcc--CccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence 5655441 222 2232 232 457999999988777653 2333333433210000
Q ss_pred ee---eEeccCCCCCCCeEEEEEcCCCcEEEEE--cCCcEEEEECCCceee------------------eeeecCCCCCC
Q 001184 954 SI---AIQLPAGKLPVGETRVQFHSDQVRLLVN--HETQLAIYDGSKMECI------------------RQWVPQDVLSS 1010 (1130)
Q Consensus 954 ~~---~~~~~~~~~~~~v~~~~~s~d~~~l~~~--~d~~i~v~d~~~~~~~------------------~~~~~~~~~~~ 1010 (1130)
.. ......++ .....++|+|+|.+.++- .++.=.|.-+..|.-. ..+..+ ..
T Consensus 189 nPf~~~~i~a~G~--RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~---~~ 263 (347)
T 3das_A 189 NPFPGSPVYSYGH--RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTD---EA 263 (347)
T ss_dssp CSSTTCCEEEBCC--SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTT---TC
T ss_pred CCCCCCeEEeeCC--CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCC---CC
Confidence 00 00000111 345689999998887773 3332333333322211 111111 12
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEeCCCc
Q 001184 1011 PISSAAYSCNSQLIYATFTDGSIGVFDADSL 1041 (1130)
Q Consensus 1011 ~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~ 1041 (1130)
....++|. +|.+++..-..+.|....+...
T Consensus 264 ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~ 293 (347)
T 3das_A 264 SPSGIAYA-EGSVWMAGLRGERLWRIPLKGT 293 (347)
T ss_dssp CEEEEEEE-TTEEEEEESTTCSEEEEEEETT
T ss_pred CCcceEEE-cCceeeccccCCEEEEEEecCC
Confidence 45677776 4666665555666666666544
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.024 Score=60.56 Aligned_cols=205 Identities=9% Similarity=0.045 Sum_probs=109.5
Q ss_pred cEEEEEeCCCcEEEEEeecCeEEEEEecC-CCCeeEEEE--cc-CCCeEEEE-eCCCcEEEEECCCCcccceeeEeccCC
Q 001184 888 NIIAIGMEDSTIQIYNVRVDEVKTKLKGH-QKHITGLAF--ST-NLNILVSS-GSDAQLIFWNTDTWEKRKSIAIQLPAG 962 (1130)
Q Consensus 888 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~--s~-dg~~L~s~-s~Dg~i~vwd~~~~~~~~~~~~~~~~~ 962 (1130)
.++++++.||.|+-.|..+|+.+-+++.. ..++....- .+ ++..++.. +.||.|..++..+|... .....+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~--~~~~~~~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK--LPLSIRQL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE--EEEEHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE--eeeccccc
Confidence 37888999999999999999998887654 122222110 11 22333333 58999999998886433 22222211
Q ss_pred CCCCCeEE---EEE------cCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCC----CCeEEEEEC-----CCCCEE
Q 001184 963 KLPVGETR---VQF------HSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLS----SPISSAAYS-----CNSQLI 1024 (1130)
Q Consensus 963 ~~~~~v~~---~~~------s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~----~~v~~v~~s-----~dg~~l 1024 (1130)
-...++.. ... +.++..++.+.++.+...|+.+|+.+..+....... ....|.... ..+..|
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v 168 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMI 168 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEE
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeE
Confidence 11011110 001 245555555889999999999999998886542100 001111111 124567
Q ss_pred EEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCccCC-cc
Q 001184 1025 YATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKW-GV 1101 (1130)
Q Consensus 1025 ~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~~~w-~~ 1101 (1130)
+.+..+..+.+.+ .+|+ +..+....+.+.. ....+.. .... ..|+.+ +.++.||.|.-.|..++..+| ..
T Consensus 169 ~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~--~~~~~~~-~~~~-s~Dg~~-~~~~~dg~v~A~d~~~G~~~W~~~ 239 (339)
T 2be1_A 169 VIGKTIFELGIHS-YDGA-SYNVTYSTWQQNV--LDVPLAL-QNTF-SKDGMC-IAPFRDKSLLASDLDFRIARWVSP 239 (339)
T ss_dssp EEEEEEEECEECC-TTSC-CCCCEEEEEECCT--TTHHHHT-TCSS-CSSSCC-EEEETTTEEEEECSTTCCEEEECC
T ss_pred EEecceEEEEEEC-CCCC-eEEEecccccccc--ccccccc-cccc-ccCCcE-EEECCCCEEEEEECCCCcEEEEee
Confidence 7777777777777 4554 3222111110000 0000000 0000 013444 557889999999999999999 54
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.15 Score=55.09 Aligned_cols=149 Identities=15% Similarity=0.157 Sum_probs=90.7
Q ss_pred CCcEEEEEeCCCcEEEEEeecCeEEEEEecC----CCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccc--------
Q 001184 886 DNNIIAIGMEDSTIQIYNVRVDEVKTKLKGH----QKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRK-------- 953 (1130)
Q Consensus 886 ~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h----~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~-------- 953 (1130)
++.-++++ .++.||.-++.....-+.+... -+.|..+..||+|++||..+.. .|.|-.+..+....
T Consensus 31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccc
Confidence 34444433 2456776666533323333322 2368889999999999998755 68888887322111
Q ss_pred --eeeEecc--CCCCCCCeEEEEEcCCCc---EEEE-EcCCcEEEEECCCceeee-ee------ecCCCCCCCeEEEEEC
Q 001184 954 --SIAIQLP--AGKLPVGETRVQFHSDQV---RLLV-NHETQLAIYDGSKMECIR-QW------VPQDVLSSPISSAAYS 1018 (1130)
Q Consensus 954 --~~~~~~~--~~~~~~~v~~~~~s~d~~---~l~~-~~d~~i~v~d~~~~~~~~-~~------~~~~~~~~~v~~v~~s 1018 (1130)
....... .......|..+.|+|-+. .|++ ..|+.|++||+....... .+ .+.......|.+++|.
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg 188 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFS 188 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEEC
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEc
Confidence 1112221 111247899999999543 4554 899999999998522111 11 1222223689999999
Q ss_pred CCCCEEEEEe--CCCcEEEE
Q 001184 1019 CNSQLIYATF--TDGSIGVF 1036 (1130)
Q Consensus 1019 ~dg~~l~t~~--~Dg~i~vw 1036 (1130)
++|-.|...+ ..|-|+-.
T Consensus 189 ~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 189 KDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TTSSCEEEEECTTSCEEEEE
T ss_pred CCCcEEEEEecCCCCCEEEE
Confidence 9988777755 77887644
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.26 Score=52.40 Aligned_cols=188 Identities=14% Similarity=0.159 Sum_probs=98.6
Q ss_pred CCCEEEEEe-C-----CeEEEEECCCceeEEEEeCCCCCe-EEEEEeCCCCcEEEEEeCCC-----cEEEEEeecCeEEE
Q 001184 844 NDSYVMSAG-G-----GKVSLFNMMNFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGMEDS-----TIQIYNVRVDEVKT 911 (1130)
Q Consensus 844 dg~~la~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~i-~~l~~sp~~~~~lasg~~dg-----~v~iwd~~~~~~~~ 911 (1130)
++++++.|+ + ..+.+||..+.+-...-....... .+++.. ++.+++.|+.++ .+.+||..+.+-..
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 138 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH 138 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence 667777765 2 358999998765433322111111 222222 567888887654 57788887665332
Q ss_pred E--EecCCCCeeEEEEccCCCeEEEEeCC-------CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE
Q 001184 912 K--LKGHQKHITGLAFSTNLNILVSSGSD-------AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1130)
Q Consensus 912 ~--l~~h~~~V~~l~~s~dg~~L~s~s~D-------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 982 (1130)
. +......- +++. -+++.++.|+.+ ..+.+||+.+.+-..... .+... .... ++. -++++++.
T Consensus 139 ~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~r--~~~~-~~~-~~~~iyv~ 210 (302)
T 2xn4_A 139 VAPMNTRRSSV-GVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAE--MSTRR--SGAG-VGV-LNNLLYAV 210 (302)
T ss_dssp ECCCSSCCBSC-EEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECC--CSSCC--BSCE-EEE-ETTEEEEE
T ss_pred cCCCCCcccCc-eEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCC--Ccccc--cccc-EEE-ECCEEEEE
Confidence 2 22111111 2222 256666766643 348899988754332211 11111 1112 222 25565555
Q ss_pred E-c-----CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCC-----cEEEEeCCCcccc
Q 001184 983 N-H-----ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG-----SIGVFDADSLRLR 1044 (1130)
Q Consensus 983 ~-~-----d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg-----~i~vwd~~~~~~~ 1044 (1130)
+ . ...+.+||..+.+-...-..... ......+ .-++++++.|+.++ .+.+||..+.+..
T Consensus 211 GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 211 GGHDGPLVRKSVEVYDPTTNAWRQVADMNMC-RRNAGVC--AVNGLLYVVGGDDGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp CCBSSSSBCCCEEEEETTTTEEEEECCCSSC-CBSCEEE--EETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred CCCCCCcccceEEEEeCCCCCEeeCCCCCCc-cccCeEE--EECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence 3 2 24699999987654433211111 1111222 23778888887653 4899999887654
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=96.12 E-value=2.4 Score=47.45 Aligned_cols=100 Identities=17% Similarity=0.134 Sum_probs=71.4
Q ss_pred ceeEEEEecCCCEEEEEe--CCeEEEEECCCcee-------------EEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcE
Q 001184 835 VVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKV-------------MTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTI 899 (1130)
Q Consensus 835 ~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~-------------~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v 899 (1130)
....+.++|||+++++++ +.++.++|+..... ....+ -.-.....+|.+ +|....+-.-|..|
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSqv 401 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQV 401 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecceE
Confidence 345688899999999988 78899999874211 22222 234577889999 77666677799999
Q ss_pred EEEEeecC----------eEEEEEecCCCCeeEEEE------ccCCCeEEEEeC
Q 001184 900 QIYNVRVD----------EVKTKLKGHQKHITGLAF------STNLNILVSSGS 937 (1130)
Q Consensus 900 ~iwd~~~~----------~~~~~l~~h~~~V~~l~~------s~dg~~L~s~s~ 937 (1130)
.-|++... ..+.++..|-.+ -.+.. .+||++|++...
T Consensus 402 vkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp EEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEES
T ss_pred EEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEecc
Confidence 99999763 567777776543 33433 579999999864
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.65 Score=58.21 Aligned_cols=97 Identities=6% Similarity=0.100 Sum_probs=60.2
Q ss_pred CcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCC
Q 001184 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGN 645 (1130)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~ 645 (1130)
..+|.+.|+..+..+..-.- ...+.-++|..+.++.-. ..++.|||+++.+.++...... .|.--.|-.+.
T Consensus 47 ~~~vvIidl~~~~~~~rrpi----~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e---~VvfWkWis~~- 117 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISLN- 117 (1630)
T ss_pred CceEEEEECCCCCCcccccc----cchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC---CceEEEecCCC-
Confidence 45788889887654422111 122345788877666654 6899999999988888776654 34444454333
Q ss_pred EEEEEeCCCcEEEEEcCCCchhhhhhc
Q 001184 646 LLVVTTADQGIKILANADGLRALRAIE 672 (1130)
Q Consensus 646 ~l~~~~~dg~i~iw~~~~~~~~~~~~~ 672 (1130)
.|+..+ +..|.-|++.......+.+.
T Consensus 118 ~l~lVT-~~aVyHW~~~~~s~P~k~fd 143 (1630)
T 1xi4_A 118 TVALVT-DNAVYHWSMEGESQPVKMFD 143 (1630)
T ss_pred eeEEEc-CCeEEEeccCCCCccHHHHh
Confidence 344443 45799999865434444443
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.53 Score=51.39 Aligned_cols=244 Identities=16% Similarity=0.122 Sum_probs=114.8
Q ss_pred CCCEEEEEe--CCeEEEEECCC--ce--eEEEEeCCCCCeEEEEEeCCCCcEEEEEeC-C---------CcEEEEEeecC
Q 001184 844 NDSYVMSAG--GGKVSLFNMMN--FK--VMTTFMSPPPASTFLAFHPQDNNIIAIGME-D---------STIQIYNVRVD 907 (1130)
Q Consensus 844 dg~~la~~~--dg~i~iwd~~~--~~--~~~~~~~~~~~i~~l~~sp~~~~~lasg~~-d---------g~v~iwd~~~~ 907 (1130)
++++++.|+ ...+.+||..+ .+ .+..+......-.+++.. ++++++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 777777776 46799999864 22 222222111112223332 5677777776 2 46889998876
Q ss_pred eEEEEEecC-CCCeeEEEEccCCCeEEEEeCC---------------------------------------CcEEEEECC
Q 001184 908 EVKTKLKGH-QKHITGLAFSTNLNILVSSGSD---------------------------------------AQLIFWNTD 947 (1130)
Q Consensus 908 ~~~~~l~~h-~~~V~~l~~s~dg~~L~s~s~D---------------------------------------g~i~vwd~~ 947 (1130)
+-...-... .......+...+++.++.|+.+ ..+.+||..
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 176 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS 176 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred cEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence 532211111 1111222223577788888765 468899988
Q ss_pred CCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-c------CCcEEEEEC--CCceeeeeeecCCCCCCCeEEEEEC
Q 001184 948 TWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-H------ETQLAIYDG--SKMECIRQWVPQDVLSSPISSAAYS 1018 (1130)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~------d~~i~v~d~--~~~~~~~~~~~~~~~~~~v~~v~~s 1018 (1130)
+.+-.... ..+.... .. .+++.. ++++++.+ . ...+.+||+ .+.+-... ...........+.+..
T Consensus 177 ~~~W~~~~--~~p~~~~-~~-~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~-~~~~~~~~~~~~~~~~ 250 (357)
T 2uvk_A 177 TQQWSYAG--ESPWYGT-AG-AAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKL-APVSSPDGVAGGFAGI 250 (357)
T ss_dssp TTEEEEEE--ECSSCCC-BS-CEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEEC-CCSSTTTCCBSCEEEE
T ss_pred CCcEEECC--CCCCCCc-cc-ccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEec-CCCCCCcccccceEEE
Confidence 75543322 1221111 11 222222 45555543 1 345777876 44332221 1111001111222233
Q ss_pred CCCCEEEEEeCC----------------------CcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCC
Q 001184 1019 CNSQLIYATFTD----------------------GSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPN 1076 (1130)
Q Consensus 1019 ~dg~~l~t~~~D----------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1076 (1130)
.++++++.|+.+ ..+.+||+.+.+....-. ++... ..| . ++.. ++.
T Consensus 251 ~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~r-~~~---~-~~~~---~~~ 318 (357)
T 2uvk_A 251 SNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGE----LSQGR-AYG---V-SLPW---NNS 318 (357)
T ss_dssp ETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEE----CSSCC-BSS---E-EEEE---TTE
T ss_pred ECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCC----CCCCc-ccc---e-eEEe---CCE
Confidence 467788887732 257899998776443211 11110 112 1 1222 567
Q ss_pred EEEEEeCCC--c--EEEEeCCCCccCCcccccCCC
Q 001184 1077 QLAVGLTDG--S--VKVIEPSETERKWGVAVPVDN 1107 (1130)
Q Consensus 1077 ~l~s~~~Dg--~--v~vW~~~~~~~~w~~~~p~~~ 1107 (1130)
+++.|+.++ . =.+|-+.-...||....|.++
T Consensus 319 i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~~ 353 (357)
T 2uvk_A 319 LLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEHH 353 (357)
T ss_dssp EEEEEEECGGGCEEEEEEEEEC-CCSCEEEC----
T ss_pred EEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecccc
Confidence 899999754 2 235544444555887777653
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.43 Score=51.01 Aligned_cols=195 Identities=11% Similarity=0.065 Sum_probs=98.4
Q ss_pred EEecCCCEEEEEe-----C-------CeEEEEECCCceeEEEEeCCCCCe-EEEEEeCCCCcEEEEEeCC--------Cc
Q 001184 840 ALSKNDSYVMSAG-----G-------GKVSLFNMMNFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGMED--------ST 898 (1130)
Q Consensus 840 ~~s~dg~~la~~~-----d-------g~i~iwd~~~~~~~~~~~~~~~~i-~~l~~sp~~~~~lasg~~d--------g~ 898 (1130)
+...++++++.|+ + ..+.+||..+.+-...-....... .+++.. ++.+++.|+.+ ..
T Consensus 41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~ 118 (315)
T 4asc_A 41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDS 118 (315)
T ss_dssp EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCC
T ss_pred EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccce
Confidence 3345777777665 1 127888988765432211111111 122222 56777777743 35
Q ss_pred EEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeC-C-----CcEEEEECCCCcccceeeEeccCCCCCCCeEEEE
Q 001184 899 IQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGS-D-----AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQ 972 (1130)
Q Consensus 899 v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~-D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 972 (1130)
+.+||..+.+-...-......-...+...+++.++.|+. + ..+.+||+.+.+-..... .+... .... ++
T Consensus 119 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~r--~~~~-~~ 193 (315)
T 4asc_A 119 VMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAP--MQTAR--SLFG-AT 193 (315)
T ss_dssp EEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCC--CSSCC--BSCE-EE
T ss_pred EEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCC--CCCch--hceE-EE
Confidence 889998876432211111111111122246677777776 2 458899988754322211 11111 1112 22
Q ss_pred EcCCCcEEEE-EcC-----CcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCC--------------c
Q 001184 973 FHSDQVRLLV-NHE-----TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG--------------S 1032 (1130)
Q Consensus 973 ~s~d~~~l~~-~~d-----~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg--------------~ 1032 (1130)
.. ++++++. +.+ ..+.+||+.+.+-...-..... .....++. -++++++.|+.++ .
T Consensus 194 ~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~ 269 (315)
T 4asc_A 194 VH-DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE-RSSLSLVS--LVGTLYAIGGFATLETESGELVPTELND 269 (315)
T ss_dssp EE-TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC-CBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred EE-CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc-ccceeEEE--ECCEEEEECCccccCcCCccccccccCc
Confidence 22 5555555 333 2588999987654433221111 11222222 2678888887532 3
Q ss_pred EEEEeCCCccccc
Q 001184 1033 IGVFDADSLRLRC 1045 (1130)
Q Consensus 1033 i~vwd~~~~~~~~ 1045 (1130)
+.+||..+.+...
T Consensus 270 v~~yd~~~~~W~~ 282 (315)
T 4asc_A 270 IWRYNEEEKKWEG 282 (315)
T ss_dssp EEEEETTTTEEEE
T ss_pred EEEecCCCChhhh
Confidence 7788988776543
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=95.77 E-value=2.3 Score=44.65 Aligned_cols=177 Identities=12% Similarity=0.101 Sum_probs=103.0
Q ss_pred EEEEecCCCEEEEEe--C-------------CeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEe--CCCcEE
Q 001184 838 CVALSKNDSYVMSAG--G-------------GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGM--EDSTIQ 900 (1130)
Q Consensus 838 ~l~~s~dg~~la~~~--d-------------g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~--~dg~v~ 900 (1130)
+--++++|.+|.... + ..|+..++.+.+....... . +..|++ ++..|+-.. .++.-.
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~---~--~~~~s~-~g~~Iy~~~~~~~~~~~ 130 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD---P--CIYASL-IGNYIYYLHYDTQTATS 130 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS---C--EEEEEE-ETTEEEEEEESSSSCEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC---C--ccEEEE-eCCEEEEEeecCCCCce
Confidence 345688999988775 2 2477788877654333221 1 236777 566666665 344444
Q ss_pred EEEee-cCeEEEEEecCCCCeeEEEEccCCCeEEEEeC-CCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCc
Q 001184 901 IYNVR-VDEVKTKLKGHQKHITGLAFSTNLNILVSSGS-DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV 978 (1130)
Q Consensus 901 iwd~~-~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 978 (1130)
||.+. .+.....+..+.. .+++++++.|.-.+. ...|.+-++..+.... + ..+ .. ...++|++.
T Consensus 131 Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~---l--~~~----~~-~~~~~P~g~ 196 (302)
T 3s25_A 131 LYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEAL---F--YDC----NC-YKPVVLDDT 196 (302)
T ss_dssp EEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEE---E--ECS----CE-EEEEEEETT
T ss_pred EEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEE---E--eCC----Cc-cceeeecCC
Confidence 55444 2333445554433 456889998886665 5678888877654321 1 111 11 234669999
Q ss_pred EEEEEc---CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeC--CCcEEEEeCCCcc
Q 001184 979 RLLVNH---ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFT--DGSIGVFDADSLR 1042 (1130)
Q Consensus 979 ~l~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~--Dg~i~vwd~~~~~ 1042 (1130)
+|+-.. ...|..-++..... ..+.. ..+ ..|+|++++|+-+.. .+.|..-++....
T Consensus 197 ~iy~t~~~~~~~I~~~~ldG~~~-~~Lt~-----~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 197 NVYYMDVNRDNAIVHVNINNPNP-VVLTE-----ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp EEEEEEGGGTTEEEEECSSSCCC-EECSC-----SCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred EEEEEEcCCCcEEEEEECCCCCe-EEEeC-----CCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 888643 23566667665443 33321 233 347888998886642 3567777776543
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.72 E-value=1.2 Score=47.39 Aligned_cols=223 Identities=15% Similarity=0.132 Sum_probs=113.2
Q ss_pred CeEEEEECCCceeEEE-EeCCCCCeEEEEEeCCCCcEEEEEeC----CC-------cEEEEEeecCeEEEE--EecCCCC
Q 001184 854 GKVSLFNMMNFKVMTT-FMSPPPASTFLAFHPQDNNIIAIGME----DS-------TIQIYNVRVDEVKTK--LKGHQKH 919 (1130)
Q Consensus 854 g~i~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~~~~~lasg~~----dg-------~v~iwd~~~~~~~~~--l~~h~~~ 919 (1130)
..+..||..+.+-... +..........+... ++.+++.|+. ++ .+.+||..+.+-... +......
T Consensus 24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 102 (318)
T 2woz_A 24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL 102 (318)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred cceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence 4588999988765442 222222333333444 6788888873 12 177788776643221 1111111
Q ss_pred eeEEEEccCCCeEEEEeCC-------CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-c------C
Q 001184 920 ITGLAFSTNLNILVSSGSD-------AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-H------E 985 (1130)
Q Consensus 920 V~~l~~s~dg~~L~s~s~D-------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~------d 985 (1130)
-..+.+ +++.++.|+.+ ..+.+||..+.+-..... .+... ... +++. .++++++.+ . -
T Consensus 103 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~r--~~~-~~~~-~~~~iyv~GG~~~~~~~~ 174 (318)
T 2woz_A 103 FGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN--LPIKV--YGH-NVIS-HNGMIYCLGGKTDDKKCT 174 (318)
T ss_dssp CEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC--CSSCE--ESC-EEEE-ETTEEEEECCEESSSCBC
T ss_pred cceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC--CCCcc--ccc-EEEE-ECCEEEEEcCCCCCCCcc
Confidence 122222 66777777754 247788888754322211 11111 111 1222 456655553 2 2
Q ss_pred CcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCC-----CcEEEEeCCCcccccccCCCcccccCCCCC
Q 001184 986 TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLRLRCRIAPSAYMSQASPNS 1060 (1130)
Q Consensus 986 ~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1060 (1130)
..+.+||..+.+-...-..... .....++. -++++++.|+.+ ..+.+||..+.+....-. .+... ..
T Consensus 175 ~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~r-~~ 246 (318)
T 2woz_A 175 NRVFIYNPKKGDWKDLAPMKTP-RSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTE----FPQER-SS 246 (318)
T ss_dssp CCEEEEETTTTEEEEECCCSSC-CBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCC----CSSCC-BS
T ss_pred ceEEEEcCCCCEEEECCCCCCC-cccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCC----CCCcc-cc
Confidence 4589999988764433211110 11112222 367888888743 357889998876443211 11110 11
Q ss_pred ceeeeEEEEEcCCCCCEEEEEeCC--------------CcEEEEeCCCCccCCccc
Q 001184 1061 QTVFPLVVTSHPQEPNQLAVGLTD--------------GSVKVIEPSETERKWGVA 1102 (1130)
Q Consensus 1061 ~~~~~~~~~~~~~~~~~l~s~~~D--------------g~v~vW~~~~~~~~w~~~ 1102 (1130)
| .+ +.. ++.+++.|+.+ ..+.++|+.+.+ |...
T Consensus 247 ~---~~-~~~---~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~ 293 (318)
T 2woz_A 247 I---SL-VSL---AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE--WAGM 293 (318)
T ss_dssp C---EE-EEE---TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE--EEEE
T ss_pred e---EE-EEE---CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE--ehhh
Confidence 2 11 121 46788888764 347778887655 8765
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.39 Score=51.10 Aligned_cols=188 Identities=13% Similarity=0.089 Sum_probs=97.2
Q ss_pred CCCEEEEEeC----------CeEEEEECCCceeEEEEeCCCCC-eEEEEEeCCCCcEEEEEeCC-----CcEEEEEeecC
Q 001184 844 NDSYVMSAGG----------GKVSLFNMMNFKVMTTFMSPPPA-STFLAFHPQDNNIIAIGMED-----STIQIYNVRVD 907 (1130)
Q Consensus 844 dg~~la~~~d----------g~i~iwd~~~~~~~~~~~~~~~~-i~~l~~sp~~~~~lasg~~d-----g~v~iwd~~~~ 907 (1130)
++++++.|+. ..+.+||..+.+-...-...... -.+++.. ++++++.|+.+ ..+.+||..+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 6666666542 35889998876543322111111 1122222 56777777644 35888998776
Q ss_pred eEEEE--EecCCCCeeEEEEccCCCeEEEEeCC-----CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEE
Q 001184 908 EVKTK--LKGHQKHITGLAFSTNLNILVSSGSD-----AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRL 980 (1130)
Q Consensus 908 ~~~~~--l~~h~~~V~~l~~s~dg~~L~s~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 980 (1130)
+-... +......-.++.+ +++.++.|+.+ ..+.+||+.+.+-..... .+... .....+.+ +++++
T Consensus 148 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~r--~~~~~~~~--~~~iy 219 (308)
T 1zgk_A 148 EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITA--MNTIR--SGAGVCVL--HNCIY 219 (308)
T ss_dssp EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCC--CSSCC--BSCEEEEE--TTEEE
T ss_pred eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCC--CCCcc--ccceEEEE--CCEEE
Confidence 43222 2111111122222 66777777654 458899988754322211 11111 11222222 55655
Q ss_pred EEE-c-----CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCC-----CcEEEEeCCCcccc
Q 001184 981 LVN-H-----ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLRLR 1044 (1130)
Q Consensus 981 ~~~-~-----d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D-----g~i~vwd~~~~~~~ 1044 (1130)
+.+ . -..+.+||+.+.+-...-..... .....++. -++++++.|+.+ ..+.+||..+.+..
T Consensus 220 v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 220 AAGGYDGQDQLNSVERYDVETETWTFVAPMKHR-RSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDTWS 291 (308)
T ss_dssp EECCBCSSSBCCCEEEEETTTTEEEECCCCSSC-CBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred EEeCCCCCCccceEEEEeCCCCcEEECCCCCCC-ccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence 553 3 25699999987654432211110 11122222 267888888754 35788888876543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=95.62 E-value=0.33 Score=60.79 Aligned_cols=239 Identities=11% Similarity=0.142 Sum_probs=139.1
Q ss_pred EEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCe
Q 001184 353 MDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHL 432 (1130)
Q Consensus 353 v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~ 432 (1130)
.-.+|..+ ++|.=. ..++.|+|+++...+....+ ...|..-.|-.+.. |+..+ +..
T Consensus 71 AIMnP~~~-iiALra-g~~lQiFnl~~k~klks~~~--------------------~e~VvfWkWis~~~-l~lVT-~~a 126 (1630)
T 1xi4_A 71 AIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLNT-VALVT-DNA 126 (1630)
T ss_pred hccCCCcc-eEEEec-CCeEEEeehHHhhhhccccc--------------------CCCceEEEecCCCe-eEEEc-CCe
Confidence 34566665 565543 56899999998877653221 33577777865543 44333 346
Q ss_pred EEEEEecCCccceeeeeeecC----CCCeeEEEEecCCCceEEEEEc------CCCcEEEEecCCCeeeEecCCCcCEEE
Q 001184 433 IHLYTYQGSNDLCQSLEIDAH----VGGVNDLAFSYPNKQLCIVTCG------DDKLIRVWDLSGRKLFQFEGHEAPVYS 502 (1130)
Q Consensus 433 i~vwd~~~~~~~~~~~~~~~h----~~~V~~i~~s~d~~~l~l~s~s------~d~~v~iwd~~~~~~~~~~~h~~~v~~ 502 (1130)
|.-|++.+.... .+.+..| ...|..-..+++.+.+ +++|= -.|.+.+|..+.+..+.+.||.+.-..
T Consensus 127 VyHW~~~~~s~P--~k~fdR~~~L~~~QIinY~~d~~~kW~-~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~ 203 (1630)
T 1xi4_A 127 VYHWSMEGESQP--VKMFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQ 203 (1630)
T ss_pred EEEeccCCCCcc--HHHHhcchhcccCeeEEeeeCCCCCeE-EEEeeccCCCcccceeeeeecccccchhhhHhHhhhhe
Confidence 999999753322 2233444 3457777788888853 33321 357889999777777777788766555
Q ss_pred EeecccCCccEEEEEec----CCcEEEEEccCC---ccee-----e--ecC--CCccEEEEEEecCCCeEEEeeecCCCC
Q 001184 503 VCPHQKENIHFIFSTAV----DGKIKAWLYDNV---GSRV-----D--YDA--PGLWCTTMLYSADGSRLFSCGTSKEGD 566 (1130)
Q Consensus 503 ~~~~~~~~~~~l~s~s~----dg~i~vwd~~~~---~~~~-----~--~~~--~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1130)
+.....+....|++-.. .+.+++-++... ...+ . +.. ...-..++..++.-..+...+. .
T Consensus 204 ~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk----~ 279 (1630)
T 1xi4_A 204 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK----Y 279 (1630)
T ss_pred eccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec----C
Confidence 54432222222333222 268888888543 1111 0 111 1223456777777666766664 8
Q ss_pred cEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 001184 567 SHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNML 623 (1130)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 623 (1130)
|.|+++|+.++.++..-+-... .+...+......-+++....|.|.--.++....+
T Consensus 280 G~~~~~d~~t~~~i~~~ris~~-~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 280 GYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred ceEEEEecccchhhhhccccCC-ceEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence 9999999999988765443222 4444444433344555556666655555554443
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=95.41 E-value=3.2 Score=43.60 Aligned_cols=181 Identities=13% Similarity=0.062 Sum_probs=100.4
Q ss_pred EEEEecCCCeEEEEEeCc-------------CeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEc
Q 001184 352 SMDFHPFHHTLLVVGCGD-------------GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1130)
Q Consensus 352 ~v~fspdg~~llasg~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 418 (1130)
+--|+++|+++..+...+ +.|+..+++.++... +.... +..|+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~~~----~~~~s 112 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDPDP----CIYAS 112 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EECSC----EEEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eecCC----ccEEE
Confidence 445789999877776544 467777777654322 11111 23788
Q ss_pred CCCCEEEEEe--CCC--eEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEec
Q 001184 419 PDGNFIGVAF--TKH--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE 494 (1130)
Q Consensus 419 pdg~~las~~--~d~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~ 494 (1130)
+++++|+... .++ .|..-++.+.. .. .+..+.. .+|+++++. +..+......|..-+..|.....+.
T Consensus 113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~---~lt~~~~----~~~~~~g~~-iy~t~~g~~~Iy~~~l~g~~~~~l~ 183 (302)
T 3s25_A 113 LIGNYIYYLHYDTQTATSLYRIRIDGEE-KK---KIKNHYL----FTCNTSDRY-FYYNNPKNGQLYRYDTASQSEALFY 183 (302)
T ss_dssp EETTEEEEEEESSSSCEEEEEEETTSCC-CE---EEESSCC----CCSEEETTE-EEEECTTTCCEEEEETTTTEEEEEE
T ss_pred EeCCEEEEEeecCCCCceEEEEECCCCC-eE---EEeCCCc----eEeeEECCE-EEEEeCCCceEEEEECCCCCEEEEe
Confidence 8999998876 333 45555555433 22 2333432 467888985 3334444677888887666555553
Q ss_pred CCCcCEEEEeecccCCccEEEEEecCC--cEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEe
Q 001184 495 GHEAPVYSVCPHQKENIHFIFSTAVDG--KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEW 572 (1130)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1130)
. +... ..++| ++..|+-....+ .|..-+++...... +.. ..+ ..|+|++++|+.+... ....|..-
T Consensus 184 ~--~~~~-~~~~P--~g~~iy~t~~~~~~~I~~~~ldG~~~~~-Lt~--~~~--~~~~~~g~~Iy~~~~~--~~~~i~~~ 251 (302)
T 3s25_A 184 D--CNCY-KPVVL--DDTNVYYMDVNRDNAIVHVNINNPNPVV-LTE--ANI--EHYNVYGSLIFYQRGG--DNPALCVV 251 (302)
T ss_dssp C--SCEE-EEEEE--ETTEEEEEEGGGTTEEEEECSSSCCCEE-CSC--SCE--EEEEEETTEEEEEECS--SSCEEEEE
T ss_pred C--CCcc-ceeee--cCCEEEEEEcCCCcEEEEEECCCCCeEE-EeC--CCc--ceEEECCCEEEEEECC--CCcEEEEE
Confidence 2 2222 22333 345666554433 45555555444332 222 223 3488899999876421 13677777
Q ss_pred eCCCC
Q 001184 573 NESEG 577 (1130)
Q Consensus 573 d~~~~ 577 (1130)
++...
T Consensus 252 ~~DG~ 256 (302)
T 3s25_A 252 KNDGT 256 (302)
T ss_dssp ETTSC
T ss_pred ECCCC
Confidence 76543
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.62 Score=50.82 Aligned_cols=59 Identities=5% Similarity=-0.112 Sum_probs=30.6
Q ss_pred cEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCC------cEEEEeCCCcccccccC
Q 001184 987 QLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG------SIGVFDADSLRLRCRIA 1048 (1130)
Q Consensus 987 ~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg------~i~vwd~~~~~~~~~~~ 1048 (1130)
.+.+||+.+.+-...-..... ... ..+...++++++.|+.++ .|.++++++++......
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~-r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQG-RAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp CCEEEECC---CEEEEECSSC-CBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred eEEEEecCCCceeeCCCCCCC-ccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 577999886543332111111 111 222334788888888543 36667888888765544
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.089 Score=51.28 Aligned_cols=145 Identities=11% Similarity=-0.071 Sum_probs=81.5
Q ss_pred ceeEEEEecCCCEEEEEeCCeEEEEECCCcee------EEEEeC-CCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecC
Q 001184 835 VVPCVALSKNDSYVMSAGGGKVSLFNMMNFKV------MTTFMS-PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD 907 (1130)
Q Consensus 835 ~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~------~~~~~~-~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 907 (1130)
.+..++|+|+|.+.++ .+|.+.-.+..+... -..+-. --..-.++.|.| ++.+.++ .||.|+-++-.+.
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCcC
Confidence 5679999999998888 888877777654211 111110 001136789999 8888777 5698877765331
Q ss_pred eE-------EEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCccccee-eEeccCCCCCCCeEEEEEcCCCcE
Q 001184 908 EV-------KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSI-AIQLPAGKLPVGETRVQFHSDQVR 979 (1130)
Q Consensus 908 ~~-------~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~d~~~ 979 (1130)
.. ...-.+-=..+..|.|.|+|.+.+.. |+.++-+...+.....-. .........-.....+.|.+++.+
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l 195 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTL 195 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCE
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcE
Confidence 10 01111112457899999999877766 776543332221110000 000000011124455778999988
Q ss_pred EEEEcCC
Q 001184 980 LLVNHET 986 (1130)
Q Consensus 980 l~~~~d~ 986 (1130)
.++. ++
T Consensus 196 ~~v~-~g 201 (236)
T 1tl2_A 196 FGVQ-GG 201 (236)
T ss_dssp EEEE-TT
T ss_pred EEEe-CC
Confidence 8777 55
|
| >1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1 | Back alignment and structure |
|---|
Probab=95.09 E-value=0.014 Score=46.62 Aligned_cols=53 Identities=17% Similarity=0.285 Sum_probs=40.0
Q ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHhcCCCcc--HHHHHHHHhccCHHHHHHHh
Q 001184 5 SRELVFLILQFLDEEKFKESVHRLEQESGFFFN--MKYFEEKALAGEWDEIEKYL 57 (1130)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~--~~~~~~~i~~g~w~~~~~~l 57 (1130)
++|+.+-|++||..+||.+++.+|.+|.|+..+ ...-.+-+|.-.|..++.+-
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQ 64 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQ 64 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHH
Confidence 468999999999999999999999999998775 11223445555666655443
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=94.98 E-value=1 Score=48.11 Aligned_cols=196 Identities=11% Similarity=0.014 Sum_probs=97.1
Q ss_pred EEecCCCEEEEEeC-----C-------eEEEEECCCceeEEEEeCCCCC-eEEEEEeCCCCcEEEEEeCC-------CcE
Q 001184 840 ALSKNDSYVMSAGG-----G-------KVSLFNMMNFKVMTTFMSPPPA-STFLAFHPQDNNIIAIGMED-------STI 899 (1130)
Q Consensus 840 ~~s~dg~~la~~~d-----g-------~i~iwd~~~~~~~~~~~~~~~~-i~~l~~sp~~~~~lasg~~d-------g~v 899 (1130)
+...++++++.|+. + .+.+||..+.+-...-...... -.+++.. ++++++.|+.+ ..+
T Consensus 52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 129 (318)
T 2woz_A 52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSV 129 (318)
T ss_dssp EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEE
T ss_pred EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceE
Confidence 34457777777761 1 1778888776543321111111 1222222 56777778764 247
Q ss_pred EEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCC------CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEE
Q 001184 900 QIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSD------AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQF 973 (1130)
Q Consensus 900 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 973 (1130)
.+||..+.+-...-......-..-+...+++.++.|+.+ ..+.+||+.+.+-..... .+... ... .++.
T Consensus 130 ~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~r--~~~-~~~~ 204 (318)
T 2woz_A 130 LCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAP--MKTPR--SMF-GVAI 204 (318)
T ss_dssp EEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECC--CSSCC--BSC-EEEE
T ss_pred EEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCC--CCCCc--ccc-eEEE
Confidence 888887764332211011111111122466777776642 358899998854322211 11111 111 2222
Q ss_pred cCCCcEEEEE-cC-----CcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCC--------------CcE
Q 001184 974 HSDQVRLLVN-HE-----TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD--------------GSI 1033 (1130)
Q Consensus 974 s~d~~~l~~~-~d-----~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D--------------g~i 1033 (1130)
-++++++.+ .+ ..+.+||+.+.+-...-.... .......+ .-++++++.|+.+ ..+
T Consensus 205 -~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~--~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v 280 (318)
T 2woz_A 205 -HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQ-ERSSISLV--SLAGSLYAIGGFAMIQLESKEFAPTEVNDI 280 (318)
T ss_dssp -ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSS-CCBSCEEE--EETTEEEEECCBCCBC----CCBCCBCCCE
T ss_pred -ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCC-cccceEEE--EECCEEEEECCeeccCCCCceeccceeeeE
Confidence 255555553 21 357789988765433211111 01111222 2367788887754 358
Q ss_pred EEEeCCCcccccc
Q 001184 1034 GVFDADSLRLRCR 1046 (1130)
Q Consensus 1034 ~vwd~~~~~~~~~ 1046 (1130)
.+||..+.+....
T Consensus 281 ~~yd~~~~~W~~~ 293 (318)
T 2woz_A 281 WKYEDDKKEWAGM 293 (318)
T ss_dssp EEEETTTTEEEEE
T ss_pred EEEeCCCCEehhh
Confidence 8889888765433
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.14 Score=49.98 Aligned_cols=148 Identities=16% Similarity=0.083 Sum_probs=83.7
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeE------EEEEe--cCCCCeeEEEEccCCCeEEEEeCCCcEEEEECC
Q 001184 876 ASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV------KTKLK--GHQKHITGLAFSTNLNILVSSGSDAQLIFWNTD 947 (1130)
Q Consensus 876 ~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~------~~~l~--~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~ 947 (1130)
.++.++|+| ++.+.++ .+|.++-.+..+... -..+- +-.. -.++.|.|+|.+.++ .||.|+-++-.
T Consensus 42 ~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 577999999 8887777 677666555533111 11110 1111 478999999988888 56988877754
Q ss_pred CCccccee--eEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceee-----eeeecCCCCCCCeEEEEECCC
Q 001184 948 TWEKRKSI--AIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECI-----RQWVPQDVLSSPISSAAYSCN 1020 (1130)
Q Consensus 948 ~~~~~~~~--~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~-----~~~~~~~~~~~~v~~v~~s~d 1020 (1130)
+.....-. -..+-... -..+..|.|.|+|.+.++. ++.++-....++... ....... .-..-..+.|+++
T Consensus 116 ~~~~~~Wl~~a~~vg~~g-w~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~-g~~~yr~l~f~~~ 192 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGG-WSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQG-GWDTFKFLFFSSV 192 (236)
T ss_dssp CSTTCCHHHHSEEEECSS-GGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESS-SGGGEEEEEECTT
T ss_pred cCCCCceeccccEeccCC-CCceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccC-CcceEEEEEECCC
Confidence 32221110 00000000 0367899999999999988 877654333321100 1111100 0223445678999
Q ss_pred CCEEEEEeCCCcEE
Q 001184 1021 SQLIYATFTDGSIG 1034 (1130)
Q Consensus 1021 g~~l~t~~~Dg~i~ 1034 (1130)
|.+.++. +|.++
T Consensus 193 G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 193 GTLFGVQ--GGKFY 204 (236)
T ss_dssp SCEEEEE--TTEEE
T ss_pred CcEEEEe--CCeEE
Confidence 9877766 66443
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=93.91 E-value=5.5 Score=44.68 Aligned_cols=107 Identities=18% Similarity=0.154 Sum_probs=61.9
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeE--EEEEec------CCCCeeEEEEccC---CCeEEEEe-C----
Q 001184 874 PPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV--KTKLKG------HQKHITGLAFSTN---LNILVSSG-S---- 937 (1130)
Q Consensus 874 ~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~--~~~l~~------h~~~V~~l~~s~d---g~~L~s~s-~---- 937 (1130)
-.....|+|.| +++++++-...+.|++++..+++. +..+.. ..+....|+|+|| +.+|..+. .
T Consensus 26 l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 34567999999 788776554445788887655543 222321 2355779999995 44444433 2
Q ss_pred --------CCcEEEEECCCCc--c--cceeeEeccCCCCCCCeEEEEEcCCCcEEEE
Q 001184 938 --------DAQLIFWNTDTWE--K--RKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1130)
Q Consensus 938 --------Dg~i~vwd~~~~~--~--~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 982 (1130)
...|.-|+++... . ........+.. .......++|.|||.+.++
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~-~~H~~~~l~f~pDG~Lyv~ 160 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSS-KDHQSGRLVIGPDQKIYYT 160 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCC-SSCCEEEEEECTTSCEEEE
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCC-CCCCCCeEeECCCCeEEEE
Confidence 2346666654321 1 11111122222 1245789999999987776
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.70 E-value=1.3 Score=47.04 Aligned_cols=190 Identities=9% Similarity=-0.042 Sum_probs=96.0
Q ss_pred EEEEEeCCCeEEEEEecCCccceeeeeeecC-CCCeeEEEE--ecCCCceEEEEE-cCCCcEEEEe-cCCCeeeEecC--
Q 001184 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAH-VGGVNDLAF--SYPNKQLCIVTC-GDDKLIRVWD-LSGRKLFQFEG-- 495 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h-~~~V~~i~~--s~d~~~l~l~s~-s~d~~v~iwd-~~~~~~~~~~~-- 495 (1130)
.+++++.||.|.-.|.++|+..-.. ... ..++....- .+.+.. .++.. +.||.+..+| .+|.....+.-
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~---~~~~~~p~~~~~~~~~~~~~~-~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~ 87 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSI---EPENFQPLIEIQEPSRLETYE-TLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ 87 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEE---CGGGSCCSEECCCSCTTTSSE-EEEECCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEe---cCCccCCcEEecCCccccCCc-EEEEEECCCCEEEEEECCCCcEEeeecccc
Confidence 6777888888888888888754422 211 111211100 011222 33333 6899999999 66644433321
Q ss_pred --CCcCEEEEeecccC-------CccEEEEEecCCcEEEEEccCCcceeeecCCCcc-------EEEEEEe-----cCCC
Q 001184 496 --HEAPVYSVCPHQKE-------NIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLW-------CTTMLYS-----ADGS 554 (1130)
Q Consensus 496 --h~~~v~~~~~~~~~-------~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-------v~~~~~s-----~~~~ 554 (1130)
...++.. .-.|-- .+..+++|+.+|++...|+.+++.+..+...... ..|.... ..+.
T Consensus 88 lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~ 166 (339)
T 2be1_A 88 LVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECEN 166 (339)
T ss_dssp HHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CC
T ss_pred ceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCC
Confidence 1222221 000001 3468899999999999999999998887654210 0011110 1234
Q ss_pred eEEEeeecCCCCcEEEEeeCCCCceeEE--E---ecccCc-eeE-EEEEcCCCCEEEEEeCCCcEEEEeCCCCceeE
Q 001184 555 RLFSCGTSKEGDSHLVEWNESEGALKRT--Y---IGFRKK-SAG-VVQFDTTRNRILAAGEDNQIKFWDMDNVNMLT 624 (1130)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~--~---~~~~~~-~v~-~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 624 (1130)
.++.+.. +..+.+.+ ++|+ +.. + ...... .+. .-..+.++.+ +.++.||.|+.+|..+|+.+.
T Consensus 167 ~v~ig~~----~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 167 MIVIGKT----IFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEE----EEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred eEEEecc----eEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 5555543 44555555 3443 111 1 110000 000 0001223454 557888888888888887665
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=93.59 E-value=11 Score=42.05 Aligned_cols=113 Identities=18% Similarity=0.224 Sum_probs=62.0
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeec--CCCccEEEEEEcCC---C
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVK--DSSISVSRVAWSPD---G 421 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~v~~spd---g 421 (1130)
-...++++|.|||+ ++++-...+.|++++..+++.... .++. ..+. ...+....|+|+|| +
T Consensus 26 l~~P~~~a~~pdG~-l~V~e~~gg~I~~~~~~~g~~~~~-----~~~~--------~~~~~~~g~~Gllgia~~Pdf~~~ 91 (454)
T 1cru_A 26 LNKPHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTV-----FQVP--------EIVNDADGQNGLLGFAFHPDFKNN 91 (454)
T ss_dssp CSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-----EECT--------TCCCCTTSSCSEEEEEECTTTTTS
T ss_pred CCCceEEEEcCCCc-EEEEEcCCCEEEEEECCCCcEeEE-----ecCC--------ccccccCCCCceeEEEECCCcCcC
Confidence 34778999999997 566543334788888765543210 0000 0111 13567889999995 5
Q ss_pred CEEEEEeC-------------CCeEEEEEecCCc-cc---eeeee-ee-cCCCCeeEEEEecCCCceEEEEE
Q 001184 422 NFIGVAFT-------------KHLIHLYTYQGSN-DL---CQSLE-ID-AHVGGVNDLAFSYPNKQLCIVTC 474 (1130)
Q Consensus 422 ~~las~~~-------------d~~i~vwd~~~~~-~~---~~~~~-~~-~h~~~V~~i~~s~d~~~l~l~s~ 474 (1130)
.+|..+.. ...|.-|+...+. .+ +.... +. ........|+|.|||. |++.+|
T Consensus 92 g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~G 162 (454)
T 1cru_A 92 PYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIG 162 (454)
T ss_dssp CEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEEC
T ss_pred CEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEEC
Confidence 54444432 2356666664321 11 11111 11 1123478999999997 244444
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=92.98 E-value=16 Score=43.44 Aligned_cols=247 Identities=8% Similarity=0.012 Sum_probs=123.3
Q ss_pred EEEE-EecCCCeEEEEEeCcC----eEEEEeCCCCceeecccceeeeccccccceeeeeecC---CCccEEEEEEcCCCC
Q 001184 351 VSMD-FHPFHHTLLVVGCGDG----EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKD---SSISVSRVAWSPDGN 422 (1130)
Q Consensus 351 ~~v~-fspdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~V~~v~~spdg~ 422 (1130)
..+. ++||+++++++-|..| .|+++|+.+++.+.. .|. ... ++ -......++|-.+..
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~-~~~------------k~~~~~~~~~~~~~W~d~~~ 197 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFE-PIT------------NSGKLLEGKFTYPTWINKDT 197 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSC-CBC------------TTCCBCCEETCCEEEEETTE
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccc-ccc------------ccccccccccceeeEECCCE
Confidence 3444 8899998776655444 599999999987742 111 000 00 000113346763333
Q ss_pred EEEEE----------eCCCeEEEEEecCCccceeeeeeecCCCCe-eEEEEecCCCc---eEEEEEcCC---CcEEEEec
Q 001184 423 FIGVA----------FTKHLIHLYTYQGSNDLCQSLEIDAHVGGV-NDLAFSYPNKQ---LCIVTCGDD---KLIRVWDL 485 (1130)
Q Consensus 423 ~las~----------~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V-~~i~~s~d~~~---l~l~s~s~d---~~v~iwd~ 485 (1130)
.+++. +....|+.|.+-+...-. ...+.+....+ .....+++++. ..+++.+.+ ..+.+.|.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 276 (711)
T 4hvt_A 198 IIFNLVLHKNEITSSLYPNSLYIWKRGESIEKA-KKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDT 276 (711)
T ss_dssp EEECCCCSTTCBCTTSSBCEEEEEETTSCGGGC-EEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEEC
T ss_pred EEEEeCCCCCCcCcCCCCCEEEEEECCCChHHC-eEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcC
Confidence 33321 122468888876643211 11344433333 34555677764 135554322 34556563
Q ss_pred C---CCeeeEecCCCcCEEEEeecccCCccEEEEE----------ecCCcEEEEEccCCc-------ceee-e-cCCCcc
Q 001184 486 S---GRKLFQFEGHEAPVYSVCPHQKENIHFIFST----------AVDGKIKAWLYDNVG-------SRVD-Y-DAPGLW 543 (1130)
Q Consensus 486 ~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----------s~dg~i~vwd~~~~~-------~~~~-~-~~~~~~ 543 (1130)
. ++ +..+....... +..+ .++.+++.. ...+.|...++.... .... + ......
T Consensus 277 ~~~~~~-~~~l~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (711)
T 4hvt_A 277 KYKNLK-LQKINMPSDAT--LQGS--FKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEV 351 (711)
T ss_dssp SSSSCE-EEECCSCTTCE--EEEE--ETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEE
T ss_pred CCCCCc-ceEeecCCcce--Eeee--ECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCe
Confidence 3 43 23332222111 1111 122344422 246778888987642 1222 2 223446
Q ss_pred EEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc-eeEE-EecccCceeEEEEEcCCCCE-EEEEe---CCCcEEEEeC
Q 001184 544 CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA-LKRT-YIGFRKKSAGVVQFDTTRNR-ILAAG---EDNQIKFWDM 617 (1130)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~-l~~~~---~dg~i~vwd~ 617 (1130)
+..+.+..+ ..+++... ++...|.+++..++. .... +.-.....+......++++. +++.+ .-+.++.+|+
T Consensus 352 l~~~~~~~~-~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~ 428 (711)
T 4hvt_A 352 FNFISTTKD-RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVK 428 (711)
T ss_dssp EEEEEECSS-CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred EEEEEEECC-EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeC
Confidence 778888865 34444432 445678899887664 2333 32221234555666676654 44433 3467888887
Q ss_pred CCCc
Q 001184 618 DNVN 621 (1130)
Q Consensus 618 ~~~~ 621 (1130)
. ++
T Consensus 429 ~-~~ 431 (711)
T 4hvt_A 429 T-HE 431 (711)
T ss_dssp T-SC
T ss_pred C-Cc
Confidence 6 44
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=92.61 E-value=7.2 Score=40.42 Aligned_cols=220 Identities=14% Similarity=0.135 Sum_probs=109.7
Q ss_pred CCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEE
Q 001184 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1130)
Q Consensus 348 ~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 427 (1130)
..|..++..... .++. . ||.|..|-......+.. + ......|..++-..+- .+|.
T Consensus 24 ~~i~~ia~G~~h--~~~l-~-~G~v~~wG~n~~Gqlg~-p------------------~~~~~~i~~ia~G~~h-s~~l- 78 (282)
T 3qhy_B 24 SGVDAIAGGYFH--GLAL-K-GGKVLGWGANLNGQLTM-P------------------AATQSGVDAIAAGNYH-SLAL- 78 (282)
T ss_dssp SSCCEEEECSSE--EEEE-E-TTEEEEEECCSSSTTSC-C------------------GGGGSCCCEEEECSSE-EEEE-
T ss_pred CCCcEEEeCCCe--EEEE-E-CCEEEEEeCCCCCCCCC-C------------------ccCCCCEEEEEeCCCE-EEEE-
Confidence 356666655442 3444 4 89999997665332210 0 0012246666665433 2333
Q ss_pred eCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCeeeEecCCCcCEEEEee
Q 001184 428 FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPVYSVCP 505 (1130)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~~~~~~h~~~v~~~~~ 505 (1130)
. ||.|..|-......+.....+ ...|..++...+-. +++ . ||.|..|- ..++.-.. ......|..++.
T Consensus 79 ~-~G~v~~wG~n~~Gqlg~P~~~---~~~v~~ia~G~~hs--~al--~-~G~v~~wG~n~~gqlg~~-~~~~~~i~~i~~ 148 (282)
T 3qhy_B 79 K-DGEVIAWGGNEDGQTTVPAEA---RSGVDAIAAGAWAS--YAL--K-DGKVIAWGDDSDGQTTVP-AEAQSGVTALDG 148 (282)
T ss_dssp E-TTEEEEEECCTTSTTCCCGGG---SSSEEEEEEETTEE--EEE--E-TTEEEEEECCTTSTTSCC-GGGGSSEEEEEE
T ss_pred E-CCEEEEeeCCCCCCCCCCccc---CCCeEEEECcCCEE--EEE--e-CCeEEEecCCCCCcCCCC-ccCCCCeEEEEc
Confidence 4 888888876543322211111 24677777765433 233 3 89999998 33433211 122345766654
Q ss_pred cccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC-CceeEEEe
Q 001184 506 HQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE-GALKRTYI 584 (1130)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~ 584 (1130)
. ....++ -. ||.|..|-.......-.-......|..++.......+ . . ++.|+.|-... +++- +.
T Consensus 149 G---~~~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~a-l--~----~G~v~~wG~n~~gqlg--~p 214 (282)
T 3qhy_B 149 G---VYTALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLA-L--K----DGKVIAWGDNRYKQTT--VP 214 (282)
T ss_dssp C---SSEEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEE-E--E----TTEEEEEECCTTSTTC--CC
T ss_pred c---cCEEEE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEE-E--E----CCeEEEEECCCCCCCC--CC
Confidence 2 222333 33 7999999665433322111112346666554333222 2 3 78888886543 2221 01
Q ss_pred cccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001184 585 GFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1130)
Q Consensus 585 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 619 (1130)
......+..++.... +.++.. ||.|+.|=...
T Consensus 215 ~~~~~~v~~i~~G~~--h~~al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 215 TEALSGVSAIASGEW--YSLALK-NGKVIAWGSSR 246 (282)
T ss_dssp GGGGSSCCEEEECSS--CEEEEE-TTEEEEESTTC
T ss_pred cccCCCceEEEcCCC--EEEEEE-CCEEEEecCCC
Confidence 011123555554433 233333 89999997654
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=91.68 E-value=5.9 Score=47.41 Aligned_cols=199 Identities=8% Similarity=0.020 Sum_probs=99.8
Q ss_pred CCCCEEEEEeCC----CeEEEEEecCCccceeee-eee---cCCCC-eeEEEEec-CCCceEEEEEcCC------CcEEE
Q 001184 419 PDGNFIGVAFTK----HLIHLYTYQGSNDLCQSL-EID---AHVGG-VNDLAFSY-PNKQLCIVTCGDD------KLIRV 482 (1130)
Q Consensus 419 pdg~~las~~~d----~~i~vwd~~~~~~~~~~~-~~~---~h~~~-V~~i~~s~-d~~~l~l~s~s~d------~~v~i 482 (1130)
-++..++.||.+ ..+.+||..+++-.. .. .+. ..... -.+++..+ +++ +++.||.+ +.+.+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~-~~~~~p~~~~p~~R~~hs~~~~~~~~~--lyv~GG~~~~~~~~~dv~~ 472 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDM-KNIEVSSSEVPVARMCHTFTTISRNNQ--LLLIGGRKAPHQGLSDNWI 472 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEE-EECCCCCSCCCCCCBSCEEEEETTTTE--EEEECCBSSTTCBCCCCEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEE-eccCCCCCCCCccccceEEEEEccCCE--EEEEcCCCCCCCccccEEE
Confidence 567778888753 468889988764221 11 100 01111 12333333 565 66666643 35778
Q ss_pred Ee-cCCCeeeE--ecCCCcCEEEEeecccCCccEEEEEecCC--cEEEEEccCCcceee-----ecCCCccEEEEEEecC
Q 001184 483 WD-LSGRKLFQ--FEGHEAPVYSVCPHQKENIHFIFSTAVDG--KIKAWLYDNVGSRVD-----YDAPGLWCTTMLYSAD 552 (1130)
Q Consensus 483 wd-~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~dg--~i~vwd~~~~~~~~~-----~~~~~~~v~~~~~s~~ 552 (1130)
|| .+...... +......-.++.+ .++.+++.|+.++ .+.+||..+..=... .........++.+..+
T Consensus 473 yd~~t~~W~~~~~~p~~R~~h~~~~~---~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 473 FDMKTREWSMIKSLSHTRFRHSACSL---PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp EETTTTEEEECCCCSBCCBSCEEEEC---TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred EeCCCCcEEECCCCCCCcccceEEEE---cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence 88 44322211 1111111112211 2557778887655 688888766432211 1111112233555655
Q ss_pred -CCeEEEeeecCCC---CcEEEEeeCCCCce-----eEEEec--ccCceeEEEEEcCCCCEEEEEeC--------CCcEE
Q 001184 553 -GSRLFSCGTSKEG---DSHLVEWNESEGAL-----KRTYIG--FRKKSAGVVQFDTTRNRILAAGE--------DNQIK 613 (1130)
Q Consensus 553 -~~~l~~~~~~~~~---~~~i~~wd~~~~~~-----~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~--------dg~i~ 613 (1130)
++.++.||...++ ...+.+||+.+... ...+.. .....-..++...++..++.||. ...+.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 6667777653222 36799999988772 222211 11111112233333667777764 34699
Q ss_pred EEeCCCCcee
Q 001184 614 FWDMDNVNML 623 (1130)
Q Consensus 614 vwd~~~~~~~ 623 (1130)
+||..+.+..
T Consensus 630 ~yd~~t~~W~ 639 (695)
T 2zwa_A 630 SLDPLSETLT 639 (695)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 9999887654
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=91.48 E-value=4.7 Score=45.17 Aligned_cols=229 Identities=14% Similarity=0.137 Sum_probs=122.7
Q ss_pred cCCCEEEEEe--CCeEEEEECCCceeEEEEeCC-CCCeEEEEEe--CCCCcEEEEEeC-------CCcE---------EE
Q 001184 843 KNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSP-PPASTFLAFH--PQDNNIIAIGME-------DSTI---------QI 901 (1130)
Q Consensus 843 ~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s--p~~~~~lasg~~-------dg~v---------~i 901 (1130)
-||++|..-. +..|-..++...++-+.+..+ ...+..++|. | +..+++.+++ ||.. .+
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~ 218 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTM 218 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceE
Confidence 4889999887 577999999999888777643 4568888886 6 5666766654 2221 11
Q ss_pred E---EeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEc----
Q 001184 902 Y---NVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFH---- 974 (1130)
Q Consensus 902 w---d~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---- 974 (1130)
| |..+-+...++.- .+..-.....++|++.++.+.+..--+. . .... . ...-..+.|.
T Consensus 219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~----------l-~em~-~--~e~D~~~vfn~~~i 283 (638)
T 3sbq_A 219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFD----------L-GGMM-R--NERDWVVVFDIHAV 283 (638)
T ss_dssp EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSS----------H-HHHT-C--SSCEEEEEEEHHHH
T ss_pred EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcC----------h-hhcC-c--ccccEEEEecHHHH
Confidence 1 1111111111110 1122234445666666666543211000 0 0000 0 0111112221
Q ss_pred ----CCCcEEEEEcCCcEEEEECCC----ceeeeeeecCCCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEeCCCccccc
Q 001184 975 ----SDQVRLLVNHETQLAIYDGSK----MECIRQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRLRC 1045 (1130)
Q Consensus 975 ----~d~~~l~~~~d~~i~v~d~~~----~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~-~Dg~i~vwd~~~~~~~~ 1045 (1130)
.+|++-.. .+..+.|.|.+. +..+..+.+. ......+.++|||+++++++ .+.++.|+|+++.....
T Consensus 284 e~~vk~G~~~~~-~g~gv~ViD~~~~~~~~~~~~~~iP~---pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~ 359 (638)
T 3sbq_A 284 EAAVKAGDFITL-GDSKTPVLDGRKKDGKDSKFTRYVPV---PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLF 359 (638)
T ss_dssp HHHHHTTCCBCC-TTCCCCEEECSCBTTBCCSSEEEEEE---SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHH
T ss_pred HHHHhcCCeEEE-CCCCeeEEccccccccCCceEEEEeC---CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhh
Confidence 23332211 111467777765 3333333232 34556789999999988877 58899999998643211
Q ss_pred c--c-CCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 001184 1046 R--I-APSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSE 1094 (1130)
Q Consensus 1046 ~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~ 1094 (1130)
. + .+...+... ..-...++..+|.+ +++-..|--.|..|.-|++..
T Consensus 360 ~~k~~~~~~~~~ae--~e~GlGPlHt~Fd~-~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 360 AGKLADPRDVIVGE--PELGLGPLHTTFDG-RGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp TTCCSCGGGGEEEC--CBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEHHH
T ss_pred hccccCcccceEee--ccCCCcccEEEECC-CCceEeeeeecceEEEEeccH
Confidence 1 0 000000000 01124577789988 466677777899999999974
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=91.45 E-value=9.3 Score=39.56 Aligned_cols=184 Identities=12% Similarity=0.042 Sum_probs=98.7
Q ss_pred ceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEe
Q 001184 835 VVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLK 914 (1130)
Q Consensus 835 ~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~ 914 (1130)
.|..++...+-..+ . .||.|..|-......+..-..-...|..++... ...+.-. ||.|+.|-....-.+....
T Consensus 64 ~i~~ia~G~~hs~~-l-~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHSLA-L-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSEEEE-E-ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCEEEE-E-ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 45556554433333 3 378888887654222111111124577777654 3444445 9999999765421111111
Q ss_pred cCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECC
Q 001184 915 GHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGS 994 (1130)
Q Consensus 915 ~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~ 994 (1130)
.....|..++...+ +.+... ||.|..|-......... +.. ....+..++...+...++ .++.++.|-..
T Consensus 138 ~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg~-p~~-----~~~~v~~i~~G~~hs~al--~~G~v~~wG~n 206 (282)
T 3qhy_B 138 EAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQTTV-PAE-----AQSGVDDVAGGIFHSLAL--KDGKVIAWGDN 206 (282)
T ss_dssp GGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTSC-CGG-----GGSSEEEEEECSSEEEEE--ETTEEEEEECC
T ss_pred cCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCCCC-cee-----cCCCeEEEEecCCEEEEE--ECCeEEEEECC
Confidence 12345777776543 333334 79999998776433221 111 124577777666655544 68999999766
Q ss_pred CceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCc
Q 001184 995 KMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSL 1041 (1130)
Q Consensus 995 ~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~ 1041 (1130)
....+...... ...|..++-..+.. ++.. ||.|+.|-....
T Consensus 207 ~~gqlg~p~~~---~~~v~~i~~G~~h~-~al~--~g~v~~wG~n~~ 247 (282)
T 3qhy_B 207 RYKQTTVPTEA---LSGVSAIASGEWYS-LALK--NGKVIAWGSSRT 247 (282)
T ss_dssp TTSTTCCCGGG---GSSCCEEEECSSCE-EEEE--TTEEEEESTTCC
T ss_pred CCCCCCCCccc---CCCceEEEcCCCEE-EEEE--CCEEEEecCCCC
Confidence 43322211111 34677777554433 3333 999999965543
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=90.35 E-value=6.8 Score=46.88 Aligned_cols=198 Identities=13% Similarity=0.164 Sum_probs=104.8
Q ss_pred cCCCEEEEEe-C----CeEEEEECCCceeEEEE-e-----CCC--CCeEEEEEeCCCCcEEEEEeCCC------cEEEEE
Q 001184 843 KNDSYVMSAG-G----GKVSLFNMMNFKVMTTF-M-----SPP--PASTFLAFHPQDNNIIAIGMEDS------TIQIYN 903 (1130)
Q Consensus 843 ~dg~~la~~~-d----g~i~iwd~~~~~~~~~~-~-----~~~--~~i~~l~~sp~~~~~lasg~~dg------~v~iwd 903 (1130)
.++.+++.|+ + ..+.+||..+++-...- . ... .....+.+.. ++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 5677777776 2 35889998876544333 1 111 1123333332 466777887543 578899
Q ss_pred eecCeEEE--EEecCCCCeeEEEEccCCCeEEEEeCCC--cEEEEECCCCcccceeeE-eccCCCCCCCeEEEEEcCC-C
Q 001184 904 VRVDEVKT--KLKGHQKHITGLAFSTNLNILVSSGSDA--QLIFWNTDTWEKRKSIAI-QLPAGKLPVGETRVQFHSD-Q 977 (1130)
Q Consensus 904 ~~~~~~~~--~l~~h~~~V~~l~~s~dg~~L~s~s~Dg--~i~vwd~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~d-~ 977 (1130)
..+.+-.. .+...... .+++...+++.++.||.++ .+.+||..+.+....... ..+... .....+.+..+ +
T Consensus 475 ~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r--~~~~a~v~~~~~~ 551 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNS--LVSAGLEFDPVSK 551 (695)
T ss_dssp TTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSC--CBSCEEEEETTTT
T ss_pred CCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcc--cceeEEEEeCCCC
Confidence 88754322 12111111 1233324788888888755 689999988543222110 011111 22233555555 5
Q ss_pred cEEEEE-c--C-----CcEEEEECCCcee-----eeeeecCCCCCCCeEEEEECCCCCEEEEEeCC--------CcEEEE
Q 001184 978 VRLLVN-H--E-----TQLAIYDGSKMEC-----IRQWVPQDVLSSPISSAAYSCNSQLIYATFTD--------GSIGVF 1036 (1130)
Q Consensus 978 ~~l~~~-~--d-----~~i~v~d~~~~~~-----~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D--------g~i~vw 1036 (1130)
++++.+ . + +.+.+||+.+... ...+.........-.+++...++++++.|+.+ ..|.+|
T Consensus 552 ~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y 631 (695)
T 2zwa_A 552 QGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISL 631 (695)
T ss_dssp EEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEE
T ss_pred EEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEE
Confidence 555553 2 2 4588999987761 11111100001111233333447888888743 459999
Q ss_pred eCCCcccc
Q 001184 1037 DADSLRLR 1044 (1130)
Q Consensus 1037 d~~~~~~~ 1044 (1130)
|..+.+..
T Consensus 632 d~~t~~W~ 639 (695)
T 2zwa_A 632 DPLSETLT 639 (695)
T ss_dssp ETTTTEEE
T ss_pred ECCCCeEE
Confidence 99988765
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=87.41 E-value=29 Score=41.22 Aligned_cols=243 Identities=9% Similarity=0.013 Sum_probs=117.9
Q ss_pred EEEE-EcCCCCEEEEE-e----CCCeEEEEEecCCccceeeeeeecCCC------CeeEEEEecCCCceEEEEE------
Q 001184 413 SRVA-WSPDGNFIGVA-F----TKHLIHLYTYQGSNDLCQSLEIDAHVG------GVNDLAFSYPNKQLCIVTC------ 474 (1130)
Q Consensus 413 ~~v~-~spdg~~las~-~----~d~~i~vwd~~~~~~~~~~~~~~~h~~------~V~~i~~s~d~~~l~l~s~------ 474 (1130)
..+. ++||+++++.+ | ....++++|+.+++.+..... ..-+. ....++|..++. ++++.
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~--~~~~~~~~~~~ 208 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDT--IIFNLVLHKNE 208 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTE--EEECCCCSTTC
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCE--EEEEeCCCCCC
Confidence 3444 88999988765 2 224799999999875532111 00000 124458874444 44432
Q ss_pred ----cCCCcEEEEe-cCC--CeeeEecCCCcCE-EEEeecccCCcc---EEEEEecC---CcEEEEEccCCcc-eeeecC
Q 001184 475 ----GDDKLIRVWD-LSG--RKLFQFEGHEAPV-YSVCPHQKENIH---FIFSTAVD---GKIKAWLYDNVGS-RVDYDA 539 (1130)
Q Consensus 475 ----s~d~~v~iwd-~~~--~~~~~~~~h~~~v-~~~~~~~~~~~~---~l~s~s~d---g~i~vwd~~~~~~-~~~~~~ 539 (1130)
+....|+.|. -+. +-...+.+....+ .+.....++... .+++.+.+ ..+.+.+.+.... ...+..
T Consensus 209 ~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 288 (711)
T 4hvt_A 209 ITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINM 288 (711)
T ss_dssp BCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCS
T ss_pred cCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeec
Confidence 1224577776 221 1223344433333 222233333322 34544423 2344445443222 233333
Q ss_pred CCccEEEEEEecCCCeEEEeeec------CCCCcEEEEeeCCCCc-------eeEE-EecccCceeEEEEEcCCCCEEEE
Q 001184 540 PGLWCTTMLYSADGSRLFSCGTS------KEGDSHLVEWNESEGA-------LKRT-YIGFRKKSAGVVQFDTTRNRILA 605 (1130)
Q Consensus 540 ~~~~v~~~~~s~~~~~l~~~~~~------~~~~~~i~~wd~~~~~-------~~~~-~~~~~~~~v~~~~~~~~~~~l~~ 605 (1130)
.... .+....++.+++....+ .-..+.|...|+.++. ..+. +.......+..+.+..+ ..+++
T Consensus 289 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~ 365 (711)
T 4hvt_A 289 PSDA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLA 365 (711)
T ss_dssp CTTC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEE
T ss_pred CCcc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEE
Confidence 3221 12344566555533211 0036778888887642 2233 44434446677888765 56677
Q ss_pred EeCCCc--EEEEeCCCCc-eeEE-EeccCCCCCcceEEEcCCCC-EEEEEeC---CCcEEEEEcC
Q 001184 606 AGEDNQ--IKFWDMDNVN-MLTS-TEAEGGLPSLPRLRFNKEGN-LLVVTTA---DQGIKILANA 662 (1130)
Q Consensus 606 ~~~dg~--i~vwd~~~~~-~~~~-~~~~~~~~~i~~v~~s~~~~-~l~~~~~---dg~i~iw~~~ 662 (1130)
...++. |+++++.+++ .... +.... ...+.....++++. ++++.+. -+.+..++..
T Consensus 366 ~~~~~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 366 TYDNVVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEETTEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEECCEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 777764 6777776664 2233 33332 12455555566654 3333332 2455555544
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=87.25 E-value=12 Score=40.26 Aligned_cols=153 Identities=9% Similarity=0.034 Sum_probs=86.0
Q ss_pred cEEEEECCCC--cccceeeEeccCCCCCCCeEEEEEc---CC----CcEEEEE--cCCcEEEEECCCceeeeeeecCCCC
Q 001184 940 QLIFWNTDTW--EKRKSIAIQLPAGKLPVGETRVQFH---SD----QVRLLVN--HETQLAIYDGSKMECIRQWVPQDVL 1008 (1130)
Q Consensus 940 ~i~vwd~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s---~d----~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~ 1008 (1130)
.|.+||+.++ +..+...+.............+.+. |+ +.++..+ ....|.|||+.+++..+........
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4667777776 5554444332222233566777777 22 4455553 4678999999999887765211000
Q ss_pred ---------------CCCeEEEEECCC----CCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEE
Q 001184 1009 ---------------SSPISSAAYSCN----SQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVT 1069 (1130)
Q Consensus 1009 ---------------~~~v~~v~~s~d----g~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1130)
...|..|++||+ ++.|.-....+ -++|.+.+.-+...-........+. -+.....+..+
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~-kg~~s~~~~~~ 281 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGN-RGKYNDAIALA 281 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEE-CCTTCCEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeee-cCCCCCcceEE
Confidence 247899999998 77777766543 3555554332211100111111110 01011223455
Q ss_pred EcCCCCCEEEEEeCCCcEEEEeCCC
Q 001184 1070 SHPQEPNQLAVGLTDGSVKVIEPSE 1094 (1130)
Q Consensus 1070 ~~~~~~~~l~s~~~Dg~v~vW~~~~ 1094 (1130)
..+.++.++++--....|..|+..+
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCC
Confidence 5544677888888889999999875
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=86.42 E-value=46 Score=37.13 Aligned_cols=55 Identities=20% Similarity=0.146 Sum_probs=34.7
Q ss_pred cEEEEEEcCCCC-EEEEEeCCCeEEEEEecCCccceeeeee-----e----cCCCCeeEEEEecC
Q 001184 411 SVSRVAWSPDGN-FIGVAFTKHLIHLYTYQGSNDLCQSLEI-----D----AHVGGVNDLAFSYP 465 (1130)
Q Consensus 411 ~V~~v~~spdg~-~las~~~d~~i~vwd~~~~~~~~~~~~~-----~----~h~~~V~~i~~s~d 465 (1130)
....|+|.|||. .|+++...|.|++++............+ . +.......|+|+|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 467899999996 4555677899999975432111111111 1 11456789999997
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=85.20 E-value=22 Score=44.01 Aligned_cols=41 Identities=17% Similarity=0.106 Sum_probs=35.3
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCC
Q 001184 1010 SPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPS 1050 (1130)
Q Consensus 1010 ~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~ 1050 (1130)
..+.+++..++..++++-+.|+++|||++.+++++...+..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~ 276 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 276 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeeccc
Confidence 46778888889999999999999999999999988776543
|
| >2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=84.91 E-value=1.6 Score=40.38 Aligned_cols=66 Identities=17% Similarity=0.285 Sum_probs=47.8
Q ss_pred ccchhhhHHHHHhHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccccccccccccC
Q 001184 67 RYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKY 133 (1130)
Q Consensus 67 ~~~~~~~~~i~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~ 133 (1130)
++.. ++|.|+-+.||||+..|...+|..++++--.-+.....+.+++|+.+.......+++....+
T Consensus 48 EL~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~~f 113 (156)
T 2nxp_A 48 ELSQ-LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDF 113 (156)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGG
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHHHH
Confidence 3444 89999999999999999999999999865444443456788888776665555444444433
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=84.30 E-value=51 Score=35.82 Aligned_cols=262 Identities=11% Similarity=0.013 Sum_probs=118.3
Q ss_pred CCceeEEEEec--CCCEEEEEeCC----eEEEEECCCceeEEEEeC--------------CCCCeEEEEEeCCC-CcEEE
Q 001184 833 EDVVPCVALSK--NDSYVMSAGGG----KVSLFNMMNFKVMTTFMS--------------PPPASTFLAFHPQD-NNIIA 891 (1130)
Q Consensus 833 ~~~i~~l~~s~--dg~~la~~~dg----~i~iwd~~~~~~~~~~~~--------------~~~~i~~l~~sp~~-~~~la 891 (1130)
...|.++++.| ++.+.+.+..| .|...+ ..++.-..+.. ....|.++++.|.+ ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 45689999998 66666665555 444432 22222111110 11247788998733 34455
Q ss_pred EEeCCCcEEEEEeecCeEEEEEec-------------------CCCCeeEEEEccC-CCeEEEEeCCCcEEEEECCCCcc
Q 001184 892 IGMEDSTIQIYNVRVDEVKTKLKG-------------------HQKHITGLAFSTN-LNILVSSGSDAQLIFWNTDTWEK 951 (1130)
Q Consensus 892 sg~~dg~v~iwd~~~~~~~~~l~~-------------------h~~~V~~l~~s~d-g~~L~s~s~Dg~i~vwd~~~~~~ 951 (1130)
++...+.|...+ +.++.-..+.. ....|.+|.+.|. ...|..+..++.|...+ +.++.
T Consensus 133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~t 210 (394)
T 3b7f_A 133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTD 210 (394)
T ss_dssp EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSS
T ss_pred EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCC
Confidence 555555544332 12222122211 1235788999873 44555555444443332 21111
Q ss_pred cceeeEeccCCC-------CCCCeEEEEEcCC-CcEEEEEcCCcEEEEECCCceeeeeeecCCCC--CCCeEEEEECC-C
Q 001184 952 RKSIAIQLPAGK-------LPVGETRVQFHSD-QVRLLVNHETQLAIYDGSKMECIRQWVPQDVL--SSPISSAAYSC-N 1020 (1130)
Q Consensus 952 ~~~~~~~~~~~~-------~~~~v~~~~~s~d-~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~--~~~v~~v~~s~-d 1020 (1130)
-........... ....+..+++.|+ ...+.++..+.|...+-. ++....+...... ...+.+++++| +
T Consensus 211 W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D~-G~tW~~~~~~l~~~~~~~~~~i~~~p~~ 289 (394)
T 3b7f_A 211 WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDRR-EGVWKRIGDAMPREVGDIGFPIVVHQRD 289 (394)
T ss_dssp CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEETT-TTEEECGGGGSCTTTCSCEEEEEECSSC
T ss_pred ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCCC-CCcceECCCCCCCCCccceEEEEECCCC
Confidence 000000000000 0134788999886 345555555555555432 3333222211100 13456788876 3
Q ss_pred CCEEEEEeC-----------CCcEEEEeCCC-cccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEE
Q 001184 1021 SQLIYATFT-----------DGSIGVFDADS-LRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVK 1088 (1130)
Q Consensus 1021 g~~l~t~~~-----------Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~ 1088 (1130)
...|.++.. ++...||.... |+.-..+.. -++....- .......++++|.++..|..++.++.
T Consensus 290 ~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~--glp~~~~~-~~~~~~~~~~~p~~~~~l~~g~~~g~-- 364 (394)
T 3b7f_A 290 PRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDR--GLPTDQAW-LTVKRQAMTADAHAPVGVYFGTTGGE-- 364 (394)
T ss_dssp TTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECB--TSCCSSCC-CCCCTBSEEECCSSSCCEEEECTTSC--
T ss_pred CCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCC--CCCCcccc-ceEEEEEEEECCCCCCEEEEEeCCCe--
Confidence 334444432 33345554443 333322221 01110000 00111236677766666777766654
Q ss_pred EEeCCCCccCCcccc
Q 001184 1089 VIEPSETERKWGVAV 1103 (1130)
Q Consensus 1089 vW~~~~~~~~w~~~~ 1103 (1130)
||.-..+...|....
T Consensus 365 l~~S~D~G~tW~~~~ 379 (394)
T 3b7f_A 365 IWASADEGEHWQCIA 379 (394)
T ss_dssp EEEESSTTSBCEEEE
T ss_pred EEEECCCCCCceEcc
Confidence 555566666686543
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=83.81 E-value=51 Score=35.43 Aligned_cols=172 Identities=10% Similarity=0.137 Sum_probs=97.6
Q ss_pred eEEEEECCCc--eeEEEEeCC------CCCeEEEEEe---CC---CCcEEEEEe-CCCcEEEEEeecCeEEEEEe-----
Q 001184 855 KVSLFNMMNF--KVMTTFMSP------PPASTFLAFH---PQ---DNNIIAIGM-EDSTIQIYNVRVDEVKTKLK----- 914 (1130)
Q Consensus 855 ~i~iwd~~~~--~~~~~~~~~------~~~i~~l~~s---p~---~~~~lasg~-~dg~v~iwd~~~~~~~~~l~----- 914 (1130)
+|.+||+.+. +.++++.-. ......+++. |. ++.++..++ ..+.|.|||+.+++.-+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5778888888 888877632 2346778877 21 134554444 45679999999887655441
Q ss_pred ---------cC----CCCeeEEEEccC----CCeEEEEeCCCcEEEEECCCCcccce---eeEe-ccCCCCCCCeEEEEE
Q 001184 915 ---------GH----QKHITGLAFSTN----LNILVSSGSDAQLIFWNTDTWEKRKS---IAIQ-LPAGKLPVGETRVQF 973 (1130)
Q Consensus 915 ---------~h----~~~V~~l~~s~d----g~~L~s~s~Dg~i~vwd~~~~~~~~~---~~~~-~~~~~~~~~v~~~~~ 973 (1130)
|. ...|..|++||+ +++|.-....+ -++|.+.+.-.... ...+ .............++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 11 246888999998 77887776655 35555543111100 0000 000000123345667
Q ss_pred c-CCCcEEEE-EcCCcEEEEECCC-c---eeeeeeecCCCCCCCeEEEEECCCCCEEEEEe
Q 001184 974 H-SDQVRLLV-NHETQLAIYDGSK-M---ECIRQWVPQDVLSSPISSAAYSCNSQLIYATF 1028 (1130)
Q Consensus 974 s-~d~~~l~~-~~d~~i~v~d~~~-~---~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~ 1028 (1130)
. .+|.+.++ -..+.|..|+..+ . +....+.... .-.....+.+.++|.+.+++.
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~-~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS-RFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT-TCCSEEEEEECTTSCEEEEEC
T ss_pred eCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC-CccccCeEEECCCCeEEEEEC
Confidence 5 56765555 4678899999875 1 1122222221 134567777777776555554
|
| >2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=82.15 E-value=0.96 Score=40.70 Aligned_cols=57 Identities=12% Similarity=0.203 Sum_probs=42.2
Q ss_pred ccchhhhHHHHHhHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccccc
Q 001184 67 RYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFR 125 (1130)
Q Consensus 67 ~~~~~~~~~i~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 125 (1130)
++.. ++|.|+-+.||||+..|..++|..++.+--.-+... .+.+++|..+.......
T Consensus 29 EL~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~ 85 (138)
T 2j4b_A 29 DLLP-LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIH 85 (138)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHh
Confidence 4444 899999999999999999999999998654444444 67777777665554443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1130 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 6e-18 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-14 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-12 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 0.002 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-17 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-12 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-12 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 9e-10 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-09 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-09 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-05 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-04 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-16 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-10 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-09 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-05 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 5e-14 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 4e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-12 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 8e-09 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.002 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-12 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-08 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 4e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 5e-12 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 5e-10 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 8e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-11 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-07 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.001 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.001 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-10 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 4e-10 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 9e-07 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 6e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-09 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 5e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 5e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 5e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-08 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 0.002 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-08 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 9e-08 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 7e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 8e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 6e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 8e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 8e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 7e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 7e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 9e-08 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 4e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 5e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.001 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.003 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-05 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 9e-06 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 0.003 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 0.004 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 1e-04 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-04 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.001 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 0.002 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 0.003 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 84.4 bits (207), Expect = 6e-18
Identities = 48/341 (14%), Positives = 103/341 (30%), Gaps = 35/341 (10%)
Query: 302 SDHEQLKKRLRASQSVDEATYPVPSQQATWSLDDLPRAVACTM--HQGSSVVSMDFHPFH 359
+ EQLK ++R ++ + + T+ H + +M +
Sbjct: 9 QEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAK-IYAMHWGT-D 66
Query: 360 HTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419
LLV DG++ +WD ++ + P + + C+ V + ++
Sbjct: 67 SRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126
Query: 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCI-------- 471
V ++ L Y +I G + Q
Sbjct: 127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGD 186
Query: 472 -------------VTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQKENIHFIFST 517
V+ D ++WD+ G F GHE+ + ++C N +
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN--AFATG 244
Query: 518 AVDGKIKAWLYDNVGSRVDYDAPGLWC--TTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575
+ D + + + Y + C T++ +S G L + D + W+
Sbjct: 245 SDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD----DFNCNVWDAL 300
Query: 576 EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWD 616
+ G + + + + D+ +K W+
Sbjct: 301 KADRAGVLAGHDNRVSC-LGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 74.4 bits (181), Expect = 1e-14
Identities = 14/116 (12%), Positives = 39/116 (33%), Gaps = 4/116 (3%)
Query: 833 EDVVPCVALSKNDSYVMSAGGG---KVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNI 889
E + + N + + ++ + + + T ++F +
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRL 284
Query: 890 IAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
+ G +D +++ + L GH ++ L + + + + D+ L WN
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 67.8 bits (164), Expect = 2e-12
Identities = 25/180 (13%), Positives = 59/180 (32%), Gaps = 8/180 (4%)
Query: 859 FNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQK 918
+ TT + D + G D++ ++++VR + GH+
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 919 HITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV 978
I + F N N + DA ++ ++ + + + T V F
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI----TSVSFSKSGR 283
Query: 979 RLLVNHET-QLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFD 1037
LL ++ ++D K + D + +S + + + D + +++
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHD---NRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.7 bits (91), Expect = 0.002
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 882 FHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQL 941
D + I + +R + L+GH I + + T+ +LVS+ D +L
Sbjct: 23 KACADATLSQITNNIDPVGRIQMRT---RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKL 79
Query: 942 IFWNTDTWEKRKSI 955
I W++ T K +I
Sbjct: 80 IIWDSYTTNKVHAI 93
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 82.5 bits (202), Expect = 2e-17
Identities = 49/314 (15%), Positives = 95/314 (30%), Gaps = 54/314 (17%)
Query: 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVS------------------- 385
H+ V + FHP +++V D I +WD + +
Sbjct: 16 HRSP-VTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 73
Query: 386 ----KPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGS 441
+ + + +VS V+ P+G+ I A I ++ Q
Sbjct: 74 LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 133
Query: 442 NDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRK-LFQFEGHEAPV 500
+ H V + + I +C +D+ +RVW ++ ++ + H V
Sbjct: 134 YCVKT---FTGHREWVRMVRPNQDGTL--IASCSNDQTVRVWVVATKECKAELREHRHVV 188
Query: 501 YSVCPHQKENI------------------HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL 542
+ + + F+ S + D IK W +
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 248
Query: 543 WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNR 602
W +L+ + G + SC D L W+ +T + F T
Sbjct: 249 WVRGVLFHSGGKFILSCA----DDKTLRVWDYKNKRCMKTLNAHEHFVTSL-DFHKTAPY 303
Query: 603 ILAAGEDNQIKFWD 616
++ D +K W+
Sbjct: 304 VVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 66.3 bits (160), Expect = 4e-12
Identities = 33/216 (15%), Positives = 69/216 (31%), Gaps = 12/216 (5%)
Query: 450 IDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQK 508
+ H V + F P + +V+ +D I+VWD +G +GH V +
Sbjct: 13 LSGHRSPVTRVIFH-PVFSV-MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70
Query: 509 ENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSH 568
+ S D IK W + +++ +G + S D
Sbjct: 71 GKLLASCSA--DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS----RDKT 124
Query: 569 LVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA 628
+ W G +T+ G ++ +V+ + I + D ++ W +
Sbjct: 125 IKMWEVQTGYCVKTFTGH-REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE 183
Query: 629 EGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664
+ + + E + ++ A + G
Sbjct: 184 HRHVVE--CISWAPESSYSSISEATGSETKKSGKPG 217
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 66.3 bits (160), Expect = 4e-12
Identities = 16/115 (13%), Positives = 40/115 (34%), Gaps = 2/115 (1%)
Query: 831 NAEDVVPCVALSKNDSYVMSAGG-GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNI 889
+ K +++S + ++++ + T + + FH
Sbjct: 203 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKF 261
Query: 890 IAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFW 944
I +D T+++++ + L H+ +T L F +V+ D + W
Sbjct: 262 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 59.4 bits (142), Expect = 9e-10
Identities = 28/190 (14%), Positives = 60/190 (31%), Gaps = 36/190 (18%)
Query: 833 EDVVPCVALSKNDSYVMSAGG-GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQ------ 885
+ V V +++ + + S V ++ + + +++ P+
Sbjct: 143 REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSI 202
Query: 886 -------------DNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNIL 932
+ G D TI++++V L GH + G+ F + +
Sbjct: 203 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFI 262
Query: 933 VSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYD 992
+S D L W+ K++ H V L H+T +
Sbjct: 263 LSCADDKTLRVWDYKNKRCMKTL----------------NAHEHFVTSLDFHKTAPYVVT 306
Query: 993 GSKMECIRQW 1002
GS + ++ W
Sbjct: 307 GSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 58.2 bits (139), Expect = 2e-09
Identities = 41/297 (13%), Positives = 97/297 (32%), Gaps = 36/297 (12%)
Query: 764 TDSASKVARLLYTNSG--IGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNG 821
+ S ++ +G L ++ VQ + + + S A + +Q
Sbjct: 34 SASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE- 92
Query: 822 LLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLA 881
+ + +V + D V ++ + ++ + + TF +
Sbjct: 93 --CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 150
Query: 882 FHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAF---------------- 925
+ D +IA D T++++ V E K +L+ H+ + +++
Sbjct: 151 PNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 209
Query: 926 ----STNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLL 981
L+S D + W+ T + L V V FHS +L
Sbjct: 210 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT----LVGHDNWV--RGVLFHSGGKFIL 263
Query: 982 VNHET-QLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFD 1037
+ L ++D C++ + ++S + + + D ++ V++
Sbjct: 264 SCADDKTLRVWDYKNKRCMKTL---NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 56.7 bits (135), Expect = 5e-09
Identities = 37/272 (13%), Positives = 83/272 (30%), Gaps = 30/272 (11%)
Query: 833 EDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAI 892
D V ++ + + S M + + + I
Sbjct: 59 TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVS 118
Query: 893 GMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKR 952
D TI+++ V+ GH++ + + + + ++ S +D + W T E +
Sbjct: 119 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 178
Query: 953 KSI---------------AIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKME 997
+ + + ET+ L + + + ++D S
Sbjct: 179 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 238
Query: 998 CIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQAS 1057
C+ V D + + + + I + D ++ V+D + R + +
Sbjct: 239 CLMTLVGHD---NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL---------N 286
Query: 1058 PNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKV 1089
+ V L H + G D +VKV
Sbjct: 287 AHEHFVTSLDF--HKTA-PYVVTGSVDQTVKV 315
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.4 bits (111), Expect = 5e-06
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 910 KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSI 955
K L GH+ +T + F +++VS+ DA + W+ +T + +++
Sbjct: 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL 55
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.1 bits (105), Expect = 3e-05
Identities = 30/178 (16%), Positives = 57/178 (32%), Gaps = 9/178 (5%)
Query: 481 RVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP 540
+ W + + GH +PV V H + + S + D IK W Y+
Sbjct: 1 KEWIPRPPEKYALSGHRSPVTRVIFHPVFS--VMVSASEDATIKVWDYETGDFERTLKGH 58
Query: 541 GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTR 600
+ + G L SC + E +
Sbjct: 59 TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSV-----SIMPNG 113
Query: 601 NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKI 658
+ I++A D IK W++ + + + R N++G L+ + DQ +++
Sbjct: 114 DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRV 169
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.3 bits (95), Expect = 5e-04
Identities = 30/225 (13%), Positives = 82/225 (36%), Gaps = 17/225 (7%)
Query: 878 TFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGS 937
T + FHP +++ ED+TI++++ + + LKGH + ++F + +L S +
Sbjct: 21 TRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA 79
Query: 938 DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKME 997
D + W+ +E +++ G + + + + + + +++
Sbjct: 80 DMTIKLWDFQGFECIRTM-----HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 134
Query: 998 CIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRI--------AP 1049
C++ + + + + LI + D ++ V+ + + +
Sbjct: 135 CVKTFTGH---REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191
Query: 1050 SAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSE 1094
S + + + L G D ++K+ + S
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 236
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 79.8 bits (195), Expect = 3e-16
Identities = 60/399 (15%), Positives = 110/399 (27%), Gaps = 75/399 (18%)
Query: 286 HPRAPSNTLGMIDYP------SSDHEQLKKRLRASQSVDEATYPVPSQQATWSLDDLPRA 339
H P N P D + + L+ + Y P+ ++
Sbjct: 1 HYLVPYNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYN-PALPREIDVE----- 54
Query: 340 VACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMM 399
+ ++ S V + F L GC + ++ V LV++ +
Sbjct: 55 LHKSLDHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVS-DGSLVARLSDDSAANKDPEN 111
Query: 400 LQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVG---- 455
L + S + + V +SPDG F+ LI ++ + + + +
Sbjct: 112 LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDY 171
Query: 456 ---------------------------------GVNDLAFSYPNKQLCIVTCGDDKLIRV 482
P I D+ +RV
Sbjct: 172 FPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV 231
Query: 483 WDLSGRKLFQ--------FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR 534
WD L + GH+ VYSV + + S ++D +K W N ++
Sbjct: 232 WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ--SVVSGSLDRSVKLWNLQNANNK 289
Query: 535 VDYDAPGLWCTTMLYSADGSRLFSCGTSKEG--------DSHLVEWNESEGALKRTYIGF 586
D P + Y + S T++ D ++ W++ G G
Sbjct: 290 SDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH 349
Query: 587 RKKSAGV-----VQFDTTRNRILAAGEDNQIKFWDMDNV 620
R V N D + + W +
Sbjct: 350 RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.2 bits (144), Expect = 6e-10
Identities = 35/319 (10%), Positives = 94/319 (29%), Gaps = 23/319 (7%)
Query: 782 ILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVAL 841
LA N ++++ + A ++ + + +++ + V
Sbjct: 76 YLATGCNKTTQVYRVSDGSL------VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF 129
Query: 842 SKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQI 901
S + ++ + ++ + + + + + + + + G D T++I
Sbjct: 130 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 189
Query: 902 YNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPA 961
+++R + L T + + + D + W+++T + + + +
Sbjct: 190 WDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES 249
Query: 962 GKLPVGE-TRVQFHSDQVRLLV----------NHETQLAIYDGSKMECIRQWVPQDVLSS 1010
G V F D ++ N + D V
Sbjct: 250 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD 309
Query: 1011 PISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTS 1070
+ S A + N + I + D + +D S + + +
Sbjct: 310 FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ-----GHRNSVISVAVANGSSL 364
Query: 1071 HPQEPNQLAVGLTDGSVKV 1089
P+ N A G D ++
Sbjct: 365 GPEY-NVFATGSGDCKARI 382
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.4 bits (142), Expect = 1e-09
Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 20/132 (15%)
Query: 833 EDVVPCVALSKNDSYVMSAGG-GKVSLFNMMNFKVMTTFMSPPPAS------------TF 879
+D V V +++ V+S V L+N+ N + +P +
Sbjct: 254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313
Query: 880 LAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLA------FSTNLNILV 933
+A ++ I G +D + ++ + L+GH+ + +A N+
Sbjct: 314 VATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA 372
Query: 934 SSGSDAQLIFWN 945
+ D + W
Sbjct: 373 TGSGDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.2 bits (105), Expect = 4e-05
Identities = 37/253 (14%), Positives = 75/253 (29%), Gaps = 16/253 (6%)
Query: 874 PPASTFL-AFHPQDNNIIAIGMEDSTIQIYN------VRVDEVKTKLKGHQKHITGLAFS 926
P FL Q + +YN + V+ K+ H + + FS
Sbjct: 14 KPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSL--DHTSVVCCVKFS 71
Query: 927 TNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQF--HSDQVRLLVNH 984
+ L +G + + ++ A K P +R +
Sbjct: 72 NDGEYLA-TGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS 130
Query: 985 ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLR 1044
+ G++ IR W ++ I L Y D + ++R+
Sbjct: 131 PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 190
Query: 1045 CRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWGVAVP 1104
++ + + T P + +A G D +V+V + +
Sbjct: 191 DLRTGQCSLTLSIEDGVTTVA----VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE 246
Query: 1105 VDNGTDNCRTVTS 1117
++GT + +V S
Sbjct: 247 NESGTGHKDSVYS 259
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.4 bits (103), Expect = 5e-05
Identities = 40/281 (14%), Positives = 99/281 (35%), Gaps = 32/281 (11%)
Query: 833 EDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPAS--------------- 877
VV CV S + Y+ + ++ + + ++ A+
Sbjct: 62 TSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSD 121
Query: 878 ---TFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVS 934
+ F P D +A G ED I+I+++ ++ L+GH++ I L + + + LVS
Sbjct: 122 LYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 180
Query: 935 SGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV--NHETQLAIYD 992
D + W+ T + +++I+ G T V + + + + + ++D
Sbjct: 181 GSGDRTVRIWDLRTGQCSLTLSIE-------DGVTTVAVSPGDGKYIAAGSLDRAVRVWD 233
Query: 993 GSKMECIRQWVPQDVL----SSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIA 1048
+ + ++ + S ++ + Q + + D S+ +++ + +
Sbjct: 234 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 293
Query: 1049 PSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKV 1089
+ ++ + Q + G D V
Sbjct: 294 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF 334
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.5 bits (176), Expect = 5e-14
Identities = 57/344 (16%), Positives = 104/344 (30%), Gaps = 29/344 (8%)
Query: 331 WSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVG---LRERLVSKP 387
W +L H + + F +V G D + +W LV
Sbjct: 1 WRRGELKSPKVLKGHDDHVITCLQFCG---NRIVSGSDDNTLKVWSAVTGKCLRTLVGHT 57
Query: 388 FKIWDMS---NCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDL 444
+W N + + + HL GS D
Sbjct: 58 GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117
Query: 445 CQSL------EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRK-LFQFEGHE 497
+ + + G +V+ D +++VWD L +GH
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT 177
Query: 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLF 557
VYS+ + S ++D I+ W D + G T + L
Sbjct: 178 NRVYSLQFDGI----HVVSGSLDTSIRVW--DVETGNCIHTLTGHQSLTSGMELKDNILV 231
Query: 558 SCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDM 617
S DS + W+ G +T G K + V +N ++ + +D +K WD+
Sbjct: 232 SG----NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 287
Query: 618 DN---VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKI 658
+ L + E+ G + R+R + + V + + +
Sbjct: 288 KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEET 331
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (106), Expect = 2e-05
Identities = 28/237 (11%), Positives = 67/237 (28%), Gaps = 33/237 (13%)
Query: 342 CTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQ 401
C V ++ + +V G D + +WD L + + +
Sbjct: 129 CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS------ 182
Query: 402 AAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLA 461
DG + I ++ + N + + H + +
Sbjct: 183 ---------------LQFDGIHVVSGSLDTSIRVWDVETGNCIH---TLTGHQSLTSGME 224
Query: 462 FSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDG 521
+V+ D +++WD+ + Q S + N +F+ +++ DG
Sbjct: 225 LKDN----ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDG 280
Query: 522 KIKAWLYDN-----VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWN 573
+K W ++ G + S + ++ L+ +
Sbjct: 281 TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (106), Expect = 2e-05
Identities = 14/121 (11%), Positives = 43/121 (35%), Gaps = 10/121 (8%)
Query: 837 PCVALSKNDSYVMSAGG-GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGME 895
+ D+ ++S V ++++ + + T P + + + N + +
Sbjct: 219 LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSD 278
Query: 896 DSTIQIYNVRVDEVKTKLK-----GHQKHITGLAFSTNLNILVSSGSD----AQLIFWNT 946
D T+++++++ E L G + + S + + +L+ +
Sbjct: 279 DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338
Query: 947 D 947
D
Sbjct: 339 D 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.7 bits (96), Expect = 4e-04
Identities = 27/235 (11%), Positives = 66/235 (28%), Gaps = 41/235 (17%)
Query: 881 AFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNIL-------- 932
N I G +D+T+++++ + L GH + N+ I
Sbjct: 22 CLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLK 80
Query: 933 --------------VSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV 978
+ + + + +++ + + H V
Sbjct: 81 VWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV 140
Query: 979 RLLVNHETQLAIYDGSKMECIRQWVPQDVLSS----PISSAAYSCNSQLIYATFTDGSIG 1034
R + ++ M + + L + + + + + D SI
Sbjct: 141 RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIR 200
Query: 1035 VFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKV 1089
V+D ++ ++ T + + + N L G D +VK+
Sbjct: 201 VWDVETGNCI--------------HTLTGHQSLTSGMELKDNILVSGNADSTVKI 241
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 67.6 bits (163), Expect = 3e-12
Identities = 31/178 (17%), Positives = 60/178 (33%), Gaps = 5/178 (2%)
Query: 878 TFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVK--TKLKGHQKHITGLAFSTNLNILVSS 935
+ A++ D IAI + + IY ++ +LK H +TG+ ++ + N +V+
Sbjct: 11 SCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 936 GSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSK 995
G+D W + ++ I V + +
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129
Query: 996 MECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYM 1053
+ S + S + NS L+ A D +F A + R AP+ +
Sbjct: 130 WWVCKHIKKPIR--STVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 56.8 bits (135), Expect = 8e-09
Identities = 29/283 (10%), Positives = 72/283 (25%), Gaps = 30/283 (10%)
Query: 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDS 408
+ ++ T + + + E+ +++ + + K +
Sbjct: 9 PISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELK-----------------EH 50
Query: 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQ 468
+ V+ V W+PD N I T +++T +G + + + K
Sbjct: 51 NGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKF 110
Query: 469 LCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLY 528
+ + + + + N + + + D K + +
Sbjct: 111 AVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSA 170
Query: 529 DNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGT----SKEGDSHLVEWNESEGALKRTYI 584
SCG + V W + +
Sbjct: 171 YIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 230
Query: 585 GFRKKSAGVVQFD--------TTRNRILAAGEDNQIKFWDMDN 619
+ A + T + ++AAG D + D+
Sbjct: 231 DKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 273
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 44.8 bits (104), Expect = 4e-05
Identities = 18/148 (12%), Positives = 36/148 (24%), Gaps = 27/148 (18%)
Query: 341 ACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMML 400
A + ++++ F LV D L+ +S +
Sbjct: 237 ATLASETLPLLAVTFITESS--LVAAGHDCFPVLFTYDSAA---------GKLSFGGRLD 285
Query: 401 QAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDL 460
++ + D L + H V+ +
Sbjct: 286 VPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDS--------------LHKNSVSQI 331
Query: 461 AFSYPNKQLC--IVTCGDDKLIRVWDLS 486
+ K C T G D + +WD+
Sbjct: 332 SVLSGGKAKCSQFCTTGMDGGMSIWDVR 359
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.1 bits (89), Expect = 0.002
Identities = 12/118 (10%), Positives = 27/118 (22%), Gaps = 6/118 (5%)
Query: 838 CVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS 897
V S V + LF + +F + D
Sbjct: 248 AVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSS-QRGLTARERFQNLDK 306
Query: 898 TIQIYNVRVDEVKTKLKGHQKHITGLAFS----TNLNILVSSGSDAQLIFWNTDTWEK 951
H+ ++ ++ + ++G D + W+ + E
Sbjct: 307 KASSEG-SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 363
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.4 bits (160), Expect = 3e-12
Identities = 43/303 (14%), Positives = 83/303 (27%), Gaps = 43/303 (14%)
Query: 340 VACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERL---------------- 383
+ C V + + +V G D I +WD E
Sbjct: 8 IHCRSETSKGVYCLQYDD---QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD 64
Query: 384 ---VSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQG 440
+ + + + + + + + I ++
Sbjct: 65 ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 124
Query: 441 SNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL-SGRKLFQFEGHEAP 499
D+ + H VN + F IV+ D+ I+VW+ + + GH+
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDFDDK----YIVSASGDRTIKVWNTSTCEFVRTLNGHKRG 180
Query: 500 VYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSC 559
+ + + S + D I+ W D G D R+ S
Sbjct: 181 IACLQYRD----RLVVSGSSDNTIRLW--DIECGACLRVLEGHEELVRCIRFDNKRIVSG 234
Query: 560 GTSKEGDSHLVEWNESEGALKRTYIG------FRKKSAGVVQFDTTRNRILAAGEDNQIK 613
D + W+ R G + S V + +I+++ D+ I
Sbjct: 235 ----AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTIL 290
Query: 614 FWD 616
WD
Sbjct: 291 IWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.5 bits (129), Expect = 2e-08
Identities = 38/240 (15%), Positives = 65/240 (27%), Gaps = 45/240 (18%)
Query: 453 HVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQKENI 511
GV L + + Q IV+ D I++WD + GH V + ++ I
Sbjct: 14 TSKGVYCLQY---DDQK-IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII 69
Query: 512 HFI-----FSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKE-- 564
V+ + V + ++ + +
Sbjct: 70 TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDIT 129
Query: 565 --------------------------GDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT 598
GD + WN S RT G G+
Sbjct: 130 LRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGH---KRGIACLQY 186
Query: 599 TRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKI 658
+++ DN I+ WD++ L E L R + +V D IK+
Sbjct: 187 RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR----IVSGAYDGKIKV 242
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.5 bits (103), Expect = 4e-05
Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 15/119 (12%)
Query: 837 PCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGME 895
L D V+S + L+++ + DN I G
Sbjct: 180 GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC---IRFDNKRIVSGAY 236
Query: 896 DSTIQIYNVRVDEVKTK---------LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
D I+++++ L H + L F +VSS D ++ W+
Sbjct: 237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ--IVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (99), Expect = 1e-04
Identities = 28/204 (13%), Positives = 68/204 (33%), Gaps = 25/204 (12%)
Query: 886 DNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
D+ I G+ D+TI+I++ E K L GH + L + + I SS S ++ N
Sbjct: 24 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVN 83
Query: 946 TDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQ 1005
T + ++ + + + + +A++D + I
Sbjct: 84 TGEMLNTLIHHCE---------AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVL 134
Query: 1006 DVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFP 1065
+ ++ + + I + D +I V++ + +
Sbjct: 135 VGHRAAVNV--VDFDDKYIVSASGDRTIKVWNTSTCEFVRTL--------------NGHK 178
Query: 1066 LVVTSHPQEPNQLAVGLTDGSVKV 1089
+ + G +D ++++
Sbjct: 179 RGIACLQYRDRLVVSGSSDNTIRL 202
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.4 bits (160), Expect = 5e-12
Identities = 37/345 (10%), Positives = 94/345 (27%), Gaps = 32/345 (9%)
Query: 316 SVDEATYPVPSQQATWSLDDLPRAVAC--TMHQGSSVVSMDFHPFHHTLLVVGCGDGEIT 373
+ D PVP +PR T++ G V ++ T V G G +
Sbjct: 18 TADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISN--PTRHVYTGGKGCVK 75
Query: 374 LWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLI 433
+WD+ + + + PDG + V +
Sbjct: 76 VWDI--------------SHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTL 121
Query: 434 HLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQF 493
++ ++ + + G+ + + +
Sbjct: 122 SIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH----NQTLVR 177
Query: 494 EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADG 553
+ + C + +++ +D +++W +D ++ Y G
Sbjct: 178 QFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS-QIFSLGYCPTG 236
Query: 554 SRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIK 613
L S + V + + + ++F ++ G+DN +
Sbjct: 237 EWLAVGMESSNVEVLHVNKP------DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLN 290
Query: 614 FWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKI 658
W + ++ + S + + +V + D+ +
Sbjct: 291 AWRTPYGASIFQSKESSSVLS---CDISVDDKYIVTGSGDKKATV 332
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.2 bits (144), Expect = 5e-10
Identities = 21/136 (15%), Positives = 40/136 (29%), Gaps = 8/136 (5%)
Query: 391 WDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEI 450
S + D + + + + P G ++ V + + +
Sbjct: 206 TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL---- 261
Query: 451 DAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKEN 510
H V L F+Y K V+ G D L+ W + V S +
Sbjct: 262 HLHESCVLSLKFAYCGKWF--VSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDK 319
Query: 511 IHFIFSTAVDGKIKAW 526
+I + + D K +
Sbjct: 320 --YIVTGSGDKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.2 bits (118), Expect = 8e-07
Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 6/95 (6%)
Query: 391 WDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEI 450
+ V + ++ G + +L++ + + QS
Sbjct: 247 NVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS--- 303
Query: 451 DAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL 485
V S + + IVT DK V+++
Sbjct: 304 -KESSSVLSCDIS-VDDKY-IVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.7 bits (96), Expect = 3e-04
Identities = 25/215 (11%), Positives = 50/215 (23%), Gaps = 22/215 (10%)
Query: 794 WKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGG 853
+ + + D C+ +S + + + + G
Sbjct: 144 CYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203
Query: 854 GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKL 913
+ L + P + +S+ K +L
Sbjct: 204 DNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLA--VGMESSNVEVLHVNKPDKYQL 261
Query: 914 KGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQF 973
H+ + L F+ VS+G D L W T I V
Sbjct: 262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS-----IFQSKESSSV--LSCDI 314
Query: 974 HSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVL 1008
D ++ GS + + +V+
Sbjct: 315 SVDDKYIVT----------GSGDKKATVY---EVI 336
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.3 bits (152), Expect = 4e-11
Identities = 30/327 (9%), Positives = 88/327 (26%), Gaps = 38/327 (11%)
Query: 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDS 408
+ + P +LL++ DG + ++ + +
Sbjct: 13 YISDIKIIP-SKSLLLITSWDGSL----------------TVYKFDIQAKNVDLLQSLRY 55
Query: 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQ 468
+ + + + T L + Q+L + G+ + +K
Sbjct: 56 KHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKL 115
Query: 469 LCIVTCGDDKL--IRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW 526
+ G ++ R + + + V + N + + +++ +
Sbjct: 116 IAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWF 175
Query: 527 LYDN---VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE----GAL 579
++ + ++C S +G + +++ +
Sbjct: 176 RLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACS-SIDGRVAVEFFDDQGDDYNSSK 234
Query: 580 KRTYIGFRKKSAGV--------VQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGG 631
+ + R ++F + AG D I W++ + +
Sbjct: 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE 294
Query: 632 LPSLPRLRFNKEGNLLVVTTADQGIKI 658
++ N+L + T+D K
Sbjct: 295 DSV---VKIACSDNILCLATSDDTFKT 318
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.2 bits (131), Expect = 2e-08
Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 7/77 (9%)
Query: 446 QSLEI-DAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSG----RKLFQFEGHEAPV 500
Q ++I A ++D+ P+K L ++ D + V+ L Q ++ P+
Sbjct: 2 QIVQIEQAPKDYISDIKII-PSKSL-LLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPL 59
Query: 501 YSVCPHQKENIHFIFST 517
++ T
Sbjct: 60 LCCNFIDNTDLQIYVGT 76
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.8 bits (122), Expect = 3e-07
Identities = 24/199 (12%), Positives = 52/199 (26%), Gaps = 35/199 (17%)
Query: 342 CTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQ 401
+ + + + L+VG + ++ + + L E + +
Sbjct: 142 LNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDV-- 199
Query: 402 AAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEI----------- 450
+ + + + + D S +
Sbjct: 200 -------------ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK 246
Query: 451 -DAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL-SGRKLFQFE-GHEAPVYSVCPHQ 507
VN + FS +K L G D +I W+L + +K+ F +E V +
Sbjct: 247 DTNLAYPVNSIEFSPRHKFLYT--AGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSD 304
Query: 508 KENIHFIFSTAVDGKIKAW 526
+ D K
Sbjct: 305 N----ILCLATSDDTFKTN 319
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.2 bits (105), Expect = 3e-05
Identities = 21/223 (9%), Positives = 49/223 (21%), Gaps = 12/223 (5%)
Query: 880 LAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLK---GHQKHITGLAFSTNLNILVSSG 936
+ P +++ I D ++ +Y + L ++ + F N ++ + G
Sbjct: 17 IKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVG 75
Query: 937 SDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKM 996
+ I A + + +
Sbjct: 76 TVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG 135
Query: 997 ECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQA 1056
+ + + NS + + + F
Sbjct: 136 VIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD--------NGTI 187
Query: 1057 SPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKW 1099
+ V P+E A DG V V + +
Sbjct: 188 EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDY 230
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.2 bits (92), Expect = 0.001
Identities = 10/71 (14%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Query: 913 LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQ 972
+ + +I+ + + ++L+ + D L + D K + +Q K P+
Sbjct: 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL-LQSLRYKHPL--LCCN 63
Query: 973 FHSDQVRLLVN 983
F + +
Sbjct: 64 FIDNTDLQIYV 74
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.8 bits (91), Expect = 0.001
Identities = 18/113 (15%), Positives = 32/113 (28%), Gaps = 15/113 (13%)
Query: 858 LFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNV------------- 904
L + +A P++ A D + +
Sbjct: 177 LPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236
Query: 905 --RVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSI 955
R + K + + FS L ++GSD + WN T +K K+
Sbjct: 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.7 bits (145), Expect = 3e-10
Identities = 33/289 (11%), Positives = 72/289 (24%), Gaps = 22/289 (7%)
Query: 336 LPRAVACTMHQGSSVVSMDFHPFH-HTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMS 394
+P V T H S V ++ F P L G G++ +W S
Sbjct: 52 VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW-----------TFDKES 100
Query: 395 NCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHV 454
N + + + + +S ++W +G + V +
Sbjct: 101 NSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQ 160
Query: 455 GGVNDLAFSYPNKQL--CIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKEN-- 510
+ + V V
Sbjct: 161 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEF 220
Query: 511 IHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLV 570
+ + S + + D P L D + + G D+ +
Sbjct: 221 VITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVG----ADATIR 276
Query: 571 EWNESEGALKRTYIGFRKKSAGVVQ--FDTTRNRILAAGEDNQIKFWDM 617
W+ + + + +++ T RI++ D + F+++
Sbjct: 277 VWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.3 bits (144), Expect = 4e-10
Identities = 34/322 (10%), Positives = 88/322 (27%), Gaps = 28/322 (8%)
Query: 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKD 407
+ + + P + CG + D + +
Sbjct: 18 NFTTHLSYDP-TTNAIAYPCGKSAFV---------------RCLDDGDSKVPPVVQFTGH 61
Query: 408 SSISVSRVAWSP--DGNFIGVAFTKHLIHLYTYQGSND-----LCQSLEIDAHVGGVNDL 460
S V+ V +SP ++ + ++ + + + E G ++D+
Sbjct: 62 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121
Query: 461 AFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD 520
++ + ++LC+V G D + + C ++ + D
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181
Query: 521 GKIK---AWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577
G + + S + G + + +S D S S +
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 241
Query: 578 ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPR 637
+ + + + + G D I+ WD+ + + +
Sbjct: 242 KYIEDDQEPVQGGIFALSWLDS-QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 300
Query: 638 LRFNKEGNLLVVTTADQG-IKI 658
+ GN +++ + G +
Sbjct: 301 VGVVATGNGRIISLSLDGTLNF 322
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.9 bits (117), Expect = 9e-07
Identities = 22/202 (10%), Positives = 46/202 (22%), Gaps = 7/202 (3%)
Query: 331 WSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKI 390
W + V V + R ++
Sbjct: 123 WDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDG 182
Query: 391 WDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIH---LYTYQGSNDLCQS 447
+ + + + + + F + + + G +
Sbjct: 183 SVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK 242
Query: 448 LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKL---FQFEGHEAPVYSVC 504
D + T G D IRVWD++ K + + + V
Sbjct: 243 YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVG 302
Query: 505 PHQKENIHFIFSTAVDGKIKAW 526
N I S ++DG + +
Sbjct: 303 VVATGN-GRIISLSLDGTLNFY 323
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.1 bits (94), Expect = 6e-04
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 3/90 (3%)
Query: 859 FNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQK 918
F P A D+ A D+TI++++V + K ++
Sbjct: 235 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 294
Query: 919 HITGLAFS---TNLNILVSSGSDAQLIFWN 945
+ T ++S D L F+
Sbjct: 295 QLGNQQVGVVATGNGRIISLSLDGTLNFYE 324
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 58.0 bits (138), Expect = 2e-09
Identities = 31/288 (10%), Positives = 67/288 (23%), Gaps = 19/288 (6%)
Query: 331 WSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKI 390
+ L T H P G G + +WD ++ +
Sbjct: 43 VPVGSLTDTEIYTEHSHQ-TTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHILKTTIPV 100
Query: 391 WDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEI 450
+ + + + + G L T G+
Sbjct: 101 FSGPVKDISWDSESKR----------IAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMN 150
Query: 451 DAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKEN 510
+ + F P S+ +
Sbjct: 151 SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD 210
Query: 511 IHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLV 570
+ VDG D+ V + T DG+++ S D +
Sbjct: 211 GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS---PDGTKIASAS----ADKTIK 263
Query: 571 EWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMD 618
WN + +++T + + T+ +++ + I F + +
Sbjct: 264 IWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 51.4 bits (121), Expect = 3e-07
Identities = 47/335 (14%), Positives = 100/335 (29%), Gaps = 33/335 (9%)
Query: 326 SQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVS 385
SQ A + LPR + V + P + C + V
Sbjct: 4 SQTALFPS--LPR------TARGTAVVLGNTPAGDKIQY--CNGTSVYTVPV-------- 45
Query: 386 KPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLC 445
+ I + S + SP G + + ++ + +
Sbjct: 46 -----------GSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL 94
Query: 446 QSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCP 505
++ I G V D+++ +K++ V G ++ V+ +A +
Sbjct: 95 KT-TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVD 153
Query: 506 HQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEG 565
+ I S + D + + + + + ++ Y+ DGS S G
Sbjct: 154 FKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTI 213
Query: 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN--RILAAGEDNQIKFWDMDNVNML 623
+ G + + S V + + +I +A D IK W++ + +
Sbjct: 214 VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE 273
Query: 624 TSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKI 658
+ + +L LV +A+ I
Sbjct: 274 KTIPVGTRIED-QQLGIIWTKQALVSISANGFINF 307
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 47.6 bits (111), Expect = 5e-06
Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 1/89 (1%)
Query: 860 NMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKH 919
F+ + S F D IA D TI+I+NV +V+ + +
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282
Query: 920 -ITGLAFSTNLNILVSSGSDAQLIFWNTD 947
L LVS ++ + F N +
Sbjct: 283 EDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.0 bits (107), Expect = 2e-05
Identities = 10/73 (13%), Positives = 18/73 (24%), Gaps = 2/73 (2%)
Query: 877 STFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSG 936
+ L P + I +++ V H T S + S
Sbjct: 20 AVVLGNTP-AGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77
Query: 937 SDAQLIFWNTDTW 949
+ W+T
Sbjct: 78 VHGNVRIWDTTQT 90
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.1 bits (133), Expect = 1e-08
Identities = 32/237 (13%), Positives = 70/237 (29%), Gaps = 26/237 (10%)
Query: 311 LRASQSVDEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDG 370
L SV + + ++ P V +SV ++ H V G D
Sbjct: 125 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIV---VSGSYDN 181
Query: 371 EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVK----DSSISVSRVAWSPDGNFIGV 426
+ +WDV + L + + + D++I + + +
Sbjct: 182 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG 241
Query: 427 AFTKHLIHLYTYQ------------GSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTC 474
+ + + G + S + H ++ + Y + I+
Sbjct: 242 HTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDN--ILVS 299
Query: 475 GDDKLIRVWDLSGRKLFQ--FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYD 529
G + +++L KL ++SV K + + DG+ + D
Sbjct: 300 GSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK---TLVAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.9 bits (117), Expect = 1e-06
Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 3/90 (3%)
Query: 859 FNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE-VKTKLKGHQ 917
F + + +NI+ G ++ IYN+R + V +
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDA 324
Query: 918 KHITGLAFSTNLNILVSSGSDAQLIFWNTD 947
I + F ++ + D Q D
Sbjct: 325 DQIWSVNFKGK-TLVAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.0 bits (112), Expect = 4e-06
Identities = 21/132 (15%), Positives = 49/132 (37%), Gaps = 9/132 (6%)
Query: 453 HVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQKENI 511
H+ V + + + +T DDK+IRV+D + + L Q GH+ V+++
Sbjct: 11 HMTSVIT-CLQFEDNYV--ITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG--- 64
Query: 512 HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571
+ S + D ++ W ++ + + + S++ H+
Sbjct: 65 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV-- 122
Query: 572 WNESEGALKRTY 583
W + + +
Sbjct: 123 WKLPKESSVPDH 134
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.6 bits (111), Expect = 5e-06
Identities = 25/172 (14%), Positives = 46/172 (26%), Gaps = 26/172 (15%)
Query: 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAI 404
H S + + F ++ G D I ++D ++ L
Sbjct: 11 HMTSVITCLQFED---NYVITGADDKMIRVYDSINKKFL-------------------LQ 48
Query: 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY 464
+ V + ++ G + + + + +G L
Sbjct: 49 LSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTV----RCLDIVE 104
Query: 465 PNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFS 516
IVT D + VW L G E V +EN +F+
Sbjct: 105 YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 156
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 1e-05
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 886 DNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
++N + G +D I++Y+ + +L GH + L ++ ILVS +D + W+
Sbjct: 22 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80
Query: 946 TDTW 949
Sbjct: 81 IKKG 84
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.3 bits (100), Expect = 1e-04
Identities = 22/279 (7%), Positives = 54/279 (19%), Gaps = 17/279 (6%)
Query: 342 CTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQ 401
H + + +V G D + +W + + + +
Sbjct: 90 FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE 149
Query: 402 AAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLA 461
G+ V ++ ++ ++
Sbjct: 150 ----------NPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG 199
Query: 462 FSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDG 521
+ + D + R G + V
Sbjct: 200 HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSA 259
Query: 522 KIKAWLYDNVGSRVDYDAPGLW--CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL 579
+ + + + + G ++ +N G L
Sbjct: 260 AADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG----SENQFNIYNLRSGKL 315
Query: 580 KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMD 618
I V F + + A +D Q +D
Sbjct: 316 VHANILKDADQIWSVNFKG-KTLVAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.4 bits (95), Expect = 5e-04
Identities = 15/131 (11%), Positives = 36/131 (27%), Gaps = 8/131 (6%)
Query: 910 KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGET 969
+T L+GH + N +++ D + +++ + L V
Sbjct: 5 RTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQ----LSGHDGGV--W 57
Query: 970 RVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFT 1029
+++ L+ + K C + N + I
Sbjct: 58 ALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR 116
Query: 1030 DGSIGVFDADS 1040
D ++ V+
Sbjct: 117 DNTLHVWKLPK 127
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.9 bits (130), Expect = 3e-08
Identities = 32/221 (14%), Positives = 64/221 (28%), Gaps = 8/221 (3%)
Query: 335 DLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMS 394
+L V M S+D L+ G +G + + ++ L + + ++
Sbjct: 172 ELQGTVESPMTPSQFATSVDISE--RGLIATGFNNGTVQISELSTLRPLYNFESQHSMIN 229
Query: 395 NCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHV 454
N + + S+ + G ++ SL AH
Sbjct: 230 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS 289
Query: 455 GGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQKENIHF 513
V L+F+ + + + G D +R WD+ + ++ H + + H
Sbjct: 290 SWVMSLSFNDSGE--TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHG 347
Query: 514 IFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGS 554
+L S + D C D S
Sbjct: 348 DSLAEPGVFDVKFLKKGWRSGMGADLNESLCCV---CLDRS 385
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.3 bits (113), Expect = 4e-06
Identities = 34/321 (10%), Positives = 83/321 (25%), Gaps = 59/321 (18%)
Query: 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAI 404
H + S+ + V GDG + +WD L + K + S + +
Sbjct: 13 HDAD-IFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68
Query: 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLC-------QSLEIDAHVGGV 457
++ + + + + Y ++ L+ D
Sbjct: 69 LQAIE------RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSF 122
Query: 458 NDLAFSYPNKQLC---IVTCGDDKLIRVWDL-------------------SGRKLFQFEG 495
L + N +L +V +W +
Sbjct: 123 WALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT 182
Query: 496 HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP--------------- 540
SV ++ I + +G ++ + ++++
Sbjct: 183 PSQFATSVDISER---GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 239
Query: 541 -GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSA-GVVQFDT 598
+ S E + + + + + F S + F+
Sbjct: 240 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND 299
Query: 599 TRNRILAAGEDNQIKFWDMDN 619
+ + +AG D +++FWD+
Sbjct: 300 SGETLCSAGWDGKLRFWDVKT 320
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 1e-05
Identities = 12/88 (13%), Positives = 26/88 (29%), Gaps = 16/88 (18%)
Query: 451 DAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLF------------QFEGHEA 498
AH + ++ + V+C D ++VWD + H
Sbjct: 11 KAHDADIFSVSAC-NSF---TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66
Query: 499 PVYSVCPHQKENIHFIFSTAVDGKIKAW 526
V + + +T+ G + +
Sbjct: 67 DVLQAIERDAFELCLVATTSFSGDLLFY 94
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.3 bits (100), Expect = 1e-04
Identities = 27/217 (12%), Positives = 54/217 (24%), Gaps = 37/217 (17%)
Query: 913 LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQ 972
K H I ++ + VS D L W+ + G V
Sbjct: 10 GKAHDADIFSVSACNSF--TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVD 67
Query: 973 FHSDQVRLLVNHETQLAIYDGSKMECIRQW-----------------------VPQDVLS 1009
+ + + S + + +
Sbjct: 68 VLQA---IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 124
Query: 1010 SPISSAAYSCNSQLIYATFTDGSIGVFDADS-------LRLRCRIAPSAYMSQASPNSQT 1062
++ S + AT G+ ++ L L + SP + +
Sbjct: 125 LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 184
Query: 1063 VFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKW 1099
F V + +A G +G+V++ E S +
Sbjct: 185 QFATSVDISER--GLIATGFNNGTVQISELSTLRPLY 219
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.5 bits (90), Expect = 0.002
Identities = 31/351 (8%), Positives = 80/351 (22%), Gaps = 14/351 (3%)
Query: 590 SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVV 649
A + + ++ D +K WD ++ + + + L +
Sbjct: 14 DADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVH-KSGLHHVDVLQAI 72
Query: 650 TTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRS 709
+ ++A L + ++ K+ +
Sbjct: 73 ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND 132
Query: 710 SPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASK 769
+ + + LT P + +
Sbjct: 133 RLLSHRLVATDVKGTTYIWK------FHPFADESNSLTLNWSPTLELQGTVESPMTPSQF 186
Query: 770 VARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVP 829
+ + G+ + VQ + + + S +
Sbjct: 187 ATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL 246
Query: 830 ENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNI 889
A D ++ ++ + + + L+F+
Sbjct: 247 AIAHDSNSFGCITLYETEFGE--RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS-GET 303
Query: 890 IAIGMEDSTIQIYNVRVDEVKTKLKGHQKHI----TGLAFSTNLNILVSSG 936
+ D ++ ++V+ E T L H I LA + + L G
Sbjct: 304 LCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 53.6 bits (127), Expect = 6e-08
Identities = 39/356 (10%), Positives = 88/356 (24%), Gaps = 56/356 (15%)
Query: 360 HTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419
H ++V + + DV V K + +P
Sbjct: 8 HEYMIVTNYPNNLHVVDVASDT--VYKSCVM----------------PDKFGPGTAMMAP 49
Query: 420 DGNFIGVA----FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG 475
D V + I L T + + S + A S K++
Sbjct: 50 DNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNP 109
Query: 476 DDKLIRVWDLSGRKLFQFEGHE-APVYSVCPHQKENIHFIFSTAVDGKIKAWLYD----- 529
+L + + +L F + V ++ A DG + D
Sbjct: 110 TQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMD 169
Query: 530 ----------NVGSRVDYDAPGLWCTTMLYSADGSRLFSC-------------GTSKEGD 566
+ + FS + +
Sbjct: 170 VKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLL 229
Query: 567 SHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTST 626
+ + G + ++ G N++ +D+ ++ +
Sbjct: 230 YGYLSVDLKTGKTHTQEFADLTELYFTGLRS-PKDPNQIYGVLNRLAKYDLKQRKLIKAA 288
Query: 627 EAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRAS 682
+ + F+K+G+ L + + + N D L ++ I+ + S +
Sbjct: 289 NLDHTYYC---VAFDKKGDKLYLGGTFNDLAVF-NPDTLEKVKNIKLPGGDMSTTT 340
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 53.2 bits (126), Expect = 9e-08
Identities = 39/379 (10%), Positives = 88/379 (23%), Gaps = 38/379 (10%)
Query: 594 VQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPR-LRFNKEGNLLVVTTA 652
++ N + D+ + + S P + V
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK--FGPGTAMMAPDNRTAYVLNN 59
Query: 653 DQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPA 712
G + D + + + S + ++ +R++
Sbjct: 60 HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV 119
Query: 713 RPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVAR 772
+P + + P++ + A+
Sbjct: 120 KPPRL----------------------EVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 157
Query: 773 LLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENA 832
L I + + + R A + Q
Sbjct: 158 LYVAGPDIYKMDVKTGKYTVAL-PLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF 216
Query: 833 EDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAI 892
+D A + ++ K T + F +
Sbjct: 217 KDDKQDPATADLLYG--------YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY 268
Query: 893 GMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKR 952
+ + Y+++ ++ +AF + L G+ L +N DT EK
Sbjct: 269 -GVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 326
Query: 953 KSIAIQLPAGKLPVGETRV 971
K+ I+LP G + +V
Sbjct: 327 KN--IKLPGGDMSTTTPQV 343
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 44.3 bits (103), Expect = 5e-05
Identities = 28/333 (8%), Positives = 78/333 (23%), Gaps = 69/333 (20%)
Query: 839 VALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGMED 896
AL Y++ + + ++ + V + + P P + +
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61
Query: 897 STIQIYNVRVDEVK------TKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWE 950
I ++ + + + + A S + + ++ + Q + +
Sbjct: 62 GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121
Query: 951 KRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDV--- 1007
R + + A L R QV L+ + G + + +
Sbjct: 122 PR--LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVAL 179
Query: 1008 -LSSPISSAAYSCNSQLIYATFT--------------------------DGSIGVFDADS 1040
L + + + + + D +
Sbjct: 180 PLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKT 239
Query: 1041 LRLRCRI------------APSAYMSQASPNSQTVF--------PLVVTSHPQEP----- 1075
+ + +Q + + +
Sbjct: 240 GKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAF 299
Query: 1076 ----NQLAVGLTDGSVKVIEPSETERKWGVAVP 1104
++L +G T + V P E+ + +P
Sbjct: 300 DKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 332
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 42.0 bits (97), Expect = 3e-04
Identities = 22/142 (15%), Positives = 37/142 (26%), Gaps = 10/142 (7%)
Query: 922 GLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLL 981
G A ++ + L + + KS + P P D
Sbjct: 1 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM--PDKFGPGT---AMMAPDNRTAY 55
Query: 982 V--NHETQLAIYD---GSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVF 1036
V NH + D + + S A S + + +YAT
Sbjct: 56 VLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLND 115
Query: 1037 DADSLRLRCRIAPSAYMSQASP 1058
R + +A +A P
Sbjct: 116 HYVVKPPRLEVFSTADGLEAKP 137
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 41.6 bits (96), Expect = 3e-04
Identities = 35/306 (11%), Positives = 78/306 (25%), Gaps = 25/306 (8%)
Query: 772 RLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPEN 831
N+ G + K ++ + G+ ++ P + P
Sbjct: 53 TAYVLNNHYGDIYGIDLDTCK-NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQ 111
Query: 832 AEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIA 891
+ V + + + + G + + + + S ++A +
Sbjct: 112 RLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVK 171
Query: 892 IGMEDSTIQI-----------YNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQ 940
G + + + ++ T F + ++
Sbjct: 172 TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 231
Query: 941 LIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIR 1000
+ + T + L + +LA YD + + I+
Sbjct: 232 YLSVDLKTGKTHTQEF-----ADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIK 286
Query: 1001 QWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRI-APSAYMSQASPN 1059
L A+ +Y T + VF+ D+L I P MS +P
Sbjct: 287 AAN----LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTTP- 341
Query: 1060 SQTVFP 1065
VF
Sbjct: 342 --QVFI 345
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.0 bits (125), Expect = 7e-08
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 859 FNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD-EVKTKLKGHQ 917
+S PA + +++A G D+ I IY+V+ ++ L H+
Sbjct: 199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK 258
Query: 918 KHITGLAFSTNLNILVSSGSDAQLIFWN 945
+ L + T + LVSSG+DA + WN
Sbjct: 259 DGVNNLLWETP-STLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.0 bits (117), Expect = 8e-07
Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 12/77 (15%)
Query: 440 GSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAP 499
G +++ +++ H G+ L + +++ D I W S + H
Sbjct: 1 GHDEVLKTIS--GHNKGITALTVNP------LISGSYDGRIMEWSSSSM----HQDHSNL 48
Query: 500 VYSVCPHQKENIHFIFS 516
+ S+ + + I
Sbjct: 49 IVSLDNSKAQEYSSISW 65
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.3 bits (110), Expect = 5e-06
Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 5/97 (5%)
Query: 388 FKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQS 447
++ + + + + + I +Y+ + + ++
Sbjct: 194 REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA 253
Query: 448 LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484
L AH GVN+L + P+ +V+ G D I+ W+
Sbjct: 254 LN--AHKDGVNNLLWETPST---LVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.8 bits (101), Expect = 6e-05
Identities = 32/286 (11%), Positives = 71/286 (24%), Gaps = 26/286 (9%)
Query: 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRER---------LVSKPFKIWDMSN 395
H + ++ +P L+ G DG I W + SK + +S
Sbjct: 12 HNKG-ITALTVNP-----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISW 65
Query: 396 CSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVG 455
+ I K S +VA + + F V + + + +
Sbjct: 66 DDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSA 125
Query: 456 GVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIF 515
N + G+ + A + E
Sbjct: 126 V-----SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAG 180
Query: 516 STAVDGKIKA-----WLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLV 570
+ R W + + + D+++
Sbjct: 181 DVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIF 240
Query: 571 EWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWD 616
++ + K + ++T + ++++G D IK W+
Sbjct: 241 IYSVKRPMKIIKALNAHKDGVNNLLWETP-STLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.3 bits (92), Expect = 8e-04
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 907 DEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAI 957
DEV + GH K IT L + L+S D +++ W++ + + S I
Sbjct: 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLI 49
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.1 bits (125), Expect = 8e-08
Identities = 34/291 (11%), Positives = 80/291 (27%), Gaps = 24/291 (8%)
Query: 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERL---------------VSKPFK 389
H + + ++ L +G I WD+ +
Sbjct: 11 HNKA-ITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD 68
Query: 390 IWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLE 449
++ +S + S VA +G+A + + S
Sbjct: 69 LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG 128
Query: 450 IDAHV---GGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPH 506
V + +A S + + + + + + H A + SV
Sbjct: 129 KLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFS 188
Query: 507 QKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGD 566
+ + + + + + + + + G+ D
Sbjct: 189 NNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL---D 245
Query: 567 SHLVEWNESEGALKRTYIGFRKKSAGV-VQFDTTRNRILAAGEDNQIKFWD 616
+ ++ WN ++ + I + V I++AG+D+ IKFW+
Sbjct: 246 NSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.9 bits (109), Expect = 7e-06
Identities = 21/158 (13%), Positives = 39/158 (24%), Gaps = 15/158 (9%)
Query: 908 EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVG 967
+ GH K IT L+ S + L S+ ++ + W+ T +
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP----------- 51
Query: 968 ETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYAT 1027
H+ + + + S + A + L A
Sbjct: 52 ----DVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAV 107
Query: 1028 FTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFP 1065
DG I V + + +S
Sbjct: 108 SADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALS 145
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 42.7 bits (98), Expect = 2e-04
Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 3/100 (3%)
Query: 387 PFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQ 446
+ ++N + + V+ V+WSPD + + + ++ +D
Sbjct: 202 KVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI 261
Query: 447 SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS 486
++ + VN + + IV+ G D I+ W++
Sbjct: 262 IIKGAHAMSSVNSVIWLNET---TIVSAGQDSNIKFWNVP 298
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.7 bits (93), Expect = 7e-04
Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 2/92 (2%)
Query: 856 VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR--VDEVKTKL 913
T + A DN +A G D+++ ++N+ D
Sbjct: 205 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK 264
Query: 914 KGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
H N +VS+G D+ + FWN
Sbjct: 265 GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 53.3 bits (126), Expect = 9e-08
Identities = 34/367 (9%), Positives = 89/367 (24%), Gaps = 35/367 (9%)
Query: 602 RILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKI-LA 660
++A Q D+ +L E + +R + + + +G + +
Sbjct: 16 DLIAFVSRGQAFIQDVSGTYVLKVPEPLR----IRYVRRGGDTKVAFIHGTREGDFLGIY 71
Query: 661 NADGLRALRAIETRAYETSRASTE--------MKVPGSAVVTTITPVLSKAERVDRSSPA 712
+ +A + E + V T + ER +
Sbjct: 72 DYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT 131
Query: 713 RPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVAR 772
+ N A K + + E + + ++
Sbjct: 132 DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSK 191
Query: 773 LLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENA 832
LY S + V ++ + P P + + N
Sbjct: 192 NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND 251
Query: 833 EDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAI 892
+ +++++ S +
Sbjct: 252 MYKRSSP-----------------INVDPGDYRMIIPLESSILIYSVPVHGE-FAAYYQG 293
Query: 893 GMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKR 952
E + Y+V+ K+ + ++T L S + ++ D ++ + + E
Sbjct: 294 APEKGVLLKYDVK----TRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDE 349
Query: 953 KSIAIQL 959
+++
Sbjct: 350 RTVETDK 356
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 49.1 bits (115), Expect = 2e-06
Identities = 24/213 (11%), Positives = 51/213 (23%), Gaps = 13/213 (6%)
Query: 415 VAWSP-DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVT 473
+SP DG+ I AF + S + + + K I
Sbjct: 8 EDFSPLDGDLI--AFVSR-GQAFIQDVSGTYVLKV---PEPLRIRYVRRGGDTKVAFIHG 61
Query: 474 CGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS 533
+ + ++D K +FE + V+++ + + + +
Sbjct: 62 TREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV 121
Query: 534 RVDYDAPGL----WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK 589
+ + A G L T + ++ K
Sbjct: 122 IERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR--KIFAATTENS 179
Query: 590 SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNM 622
FD + + D +N
Sbjct: 180 HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNF 212
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 47.9 bits (112), Expect = 4e-06
Identities = 19/231 (8%), Positives = 45/231 (19%), Gaps = 46/231 (19%)
Query: 296 MIDYPSSDHEQLKKRLRASQSVDEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDF 355
+ R A + + D+ +S
Sbjct: 126 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPA 185
Query: 356 HPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMS--------------------- 394
L D + K + +
Sbjct: 186 FDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAG 245
Query: 395 ----------------NCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTY 438
+ ++ S + S + A K ++ Y
Sbjct: 246 EYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDV 305
Query: 439 QGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRK 489
+ ++ + DL S +++ ++ DD I + L +
Sbjct: 306 KTR-------KVTEVKNNLTDLRLS-ADRKT-VMVRKDDGKIYTFPLEKPE 347
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 47.5 bits (111), Expect = 5e-06
Identities = 22/310 (7%), Positives = 66/310 (21%), Gaps = 41/310 (13%)
Query: 346 QGSSVVSMDFHPFHHTLLVVGCGDGE-ITLWDVGLRERLVSKPFKIWDMSN--------- 395
+ + + + G +G+ + ++D + + +
Sbjct: 41 EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFA 100
Query: 396 -------------CSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSN 442
I + ++ S + FI F Y
Sbjct: 101 VVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA 160
Query: 443 DLCQSLEIDAHVGG----VNDLAFSYPNKQLCIVTCGDDKLIRVWDLS--------GRKL 490
+E +D A ++ + L D K
Sbjct: 161 IHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKP 220
Query: 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGK-IKAWLYDNVGSRVDYDAPGLWCTTMLY 549
F + ++ ++ + P +
Sbjct: 221 FVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYS 280
Query: 550 SADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED 609
+ L++++ + K + ++ R ++ +D
Sbjct: 281 VPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV-----KNNLTDLRLSADRKTVMVRKDD 335
Query: 610 NQIKFWDMDN 619
+I + ++
Sbjct: 336 GKIYTFPLEK 345
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 40.2 bits (92), Expect = 0.001
Identities = 17/179 (9%), Positives = 53/179 (29%), Gaps = 8/179 (4%)
Query: 867 MTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFS 926
+ + + D+ + S + V ++ I + S
Sbjct: 170 KIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGS 229
Query: 927 TNLNILVSSGSDAQLI-FWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHE 985
N LV ++ + D +++ I + ++ + ++ + V+ E
Sbjct: 230 PNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIP---LESSILIYSVPVHGE 286
Query: 986 TQLAIYDGSKMECIRQWVPQD----VLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS 1040
+ + ++ + + + ++ S + + + DG I F +
Sbjct: 287 FAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEK 345
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 38.7 bits (88), Expect = 0.003
Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 5/81 (6%)
Query: 875 PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVS 934
P+ F P D ++IA Q + V I + + +
Sbjct: 3 PSKFAEDFSPLDGDLIAFVSRG---QAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFI 59
Query: 935 SGSD--AQLIFWNTDTWEKRK 953
G+ L ++ T + K
Sbjct: 60 HGTREGDFLGIYDYRTGKAEK 80
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 51.3 bits (121), Expect = 4e-07
Identities = 25/303 (8%), Positives = 62/303 (20%), Gaps = 27/303 (8%)
Query: 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAI 404
G + + P + D+ E + + + AA+
Sbjct: 31 DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE-TLGRIDLSTPEERVKSLFGAAL 89
Query: 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY 464
D + + + + LA++
Sbjct: 90 SPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL-----SRRKAFEAPRQITMLAWAR 144
Query: 465 PNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIK 524
+L G D + + +G + + + ++
Sbjct: 145 DGSKL--YGLGRDLHVMDPE-AGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATP 201
Query: 525 AWLYDNVGSRVD----------YDAPGLWCTTMLYSADGSRLFSCGTSKEG------DSH 568
+ D D FS + +
Sbjct: 202 FYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNV 261
Query: 569 LVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA 628
L ++ + A + S V T + + G + +D + + +
Sbjct: 262 LESFDLEKNASIKRV--PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319
Query: 629 EGG 631
G
Sbjct: 320 PGN 322
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 49.0 bits (115), Expect = 2e-06
Identities = 34/356 (9%), Positives = 92/356 (25%), Gaps = 39/356 (10%)
Query: 600 RNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659
R+ ILA +++ D + + + P+ G + T
Sbjct: 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSE---- 56
Query: 660 ANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILN 719
+ T ++ S + + A D + A + +
Sbjct: 57 ------------SLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVR 104
Query: 720 GADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSG 779
+ L D ++ ++ LY
Sbjct: 105 LELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAW----------ARDGSKLYGLGR 154
Query: 780 IGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCV 839
+ G K ++ + + +A + S+G++ T
Sbjct: 155 DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFY----------T 204
Query: 840 ALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTI 899
A D +A + ++ ++ + F + +
Sbjct: 205 ARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF--GAYNVL 262
Query: 900 QIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSI 955
+ +++ + ++ + ST+ + + G+ L ++ +T EK+ +
Sbjct: 263 ESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQV 317
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.0 bits (107), Expect = 2e-05
Identities = 34/366 (9%), Positives = 91/366 (24%), Gaps = 63/366 (17%)
Query: 362 LLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421
++ ++ + D + D+ + +P G
Sbjct: 3 YILAPARPDKLVVIDTEKMAVDKVIT-----------------IADAGPTPMVPMVAPGG 45
Query: 422 NFIGVAFTK----HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD 477
K I L T + + + V + A S K L I
Sbjct: 46 RIAYATVNKSESLVKIDLVTGE-TLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVR 104
Query: 478 KLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFST-----AVDGKIKAWLYDNVG 532
+ +++ ++ ++ ++ ++ G+ + G
Sbjct: 105 LELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAG 164
Query: 533 SRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL------------- 579
+ V+ W D +++ S + +
Sbjct: 165 TLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM 224
Query: 580 -----KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPS 634
+ R + A G N ++ +D++ + S
Sbjct: 225 DLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYS 284
Query: 635 LPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVT 694
+ + +G+ + + A + +A+ L + +PG+A ++
Sbjct: 285 ---VNVSTDGSTVWLGGALGDLAAY-DAETLEKKGQV--------------DLPGNASMS 326
Query: 695 TITPVL 700
+ L
Sbjct: 327 LASVRL 332
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 46.9 bits (110), Expect = 9e-06
Identities = 30/263 (11%), Positives = 72/263 (27%), Gaps = 31/263 (11%)
Query: 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAA 403
+G +V + +HP ++ + + +V + K+ ++ +
Sbjct: 148 STRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK-------ETGKVLLVNYKDIDNLTV 200
Query: 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFS 463
++ ++ W + A L +++ F
Sbjct: 201 TSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFV 260
Query: 464 YPN-KQLCIVTCGDDKLIRVWDLS--------GRKLFQFEGHEAPVYSVCPHQKE-NIHF 513
+P + + D I + +K+ + +G + H K +++
Sbjct: 261 HPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYV 320
Query: 514 IFSTAVDGKIKAWLY-------------DNVGSRVDYDAPGLWCTTMLYSADGSRL-FSC 559
+ D +I + + D Y+ G + FS
Sbjct: 321 DTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSV 380
Query: 560 GTSKEGDSHLVEWNESEGALKRT 582
K S LV ++ LK
Sbjct: 381 WNGKNDSSALVVVDDKTLKLKAV 403
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 39.2 bits (90), Expect = 0.003
Identities = 22/218 (10%), Positives = 50/218 (22%), Gaps = 27/218 (12%)
Query: 360 HTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419
+ V G+I L D ++ + + +V S
Sbjct: 32 NLFSVTLRDAGQIALVDGDSKKIVKVID--------------------TGYAVHISRMSA 71
Query: 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDA---HVGGVNDLAFSYPNKQLCIVTCGD 476
G ++ V I + + EI + + I
Sbjct: 72 SGRYLLVIGRDARIDMIDLWAKEPT-KVAEIKIGIEARSVESSKFKG-YEDRYTIAGAYW 129
Query: 477 DKLIRVWDLSGRK-LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV 535
+ D + V + H + + I ++ + + + G +
Sbjct: 130 PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET-GKVL 188
Query: 536 DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWN 573
+ + T+ L G + N
Sbjct: 189 LVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAAN 226
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 38.4 bits (88), Expect = 0.004
Identities = 15/130 (11%), Positives = 34/130 (26%), Gaps = 11/130 (8%)
Query: 828 VPENAEDVVPCVAL-SKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQD 886
V L N V G+++L + + K++ + A
Sbjct: 15 VKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT-GYAVHISRMSA-S 72
Query: 887 NNIIAIGMEDSTIQIY------NVRVDEVKTKLKGHQKHITGLAFSTNLNIL-VSSGSDA 939
+ + D+ I + +V E+K + + +
Sbjct: 73 GRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPP 131
Query: 940 QLIFWNTDTW 949
Q + +T
Sbjct: 132 QFAIMDGETL 141
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 43.3 bits (100), Expect = 1e-04
Identities = 28/267 (10%), Positives = 69/267 (25%), Gaps = 29/267 (10%)
Query: 338 RAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCS 397
V T+ GS+ + P + V ++++ D + + P
Sbjct: 22 NKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAV 81
Query: 398 MMLQAAIVKDSSIS----------------------VSRVAWSPDGNFIGVAFTKHLIHL 435
+ + S +A SPDG + V
Sbjct: 82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVS 141
Query: 436 YTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEG 495
+ + ++ + G+ P+ V D I V D +
Sbjct: 142 VINTVTKAVINTVSVGRSPKGI----AVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK 197
Query: 496 HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSR 555
EA + + + ++ + + + G + + DG +
Sbjct: 198 VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKK 257
Query: 556 LFSCGTSKEGDSHLVEWNESEGALKRT 582
++ + + + + + + T
Sbjct: 258 VY---VALSFCNTVSVIDTATNTITAT 281
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 43.0 bits (100), Expect = 1e-04
Identities = 23/256 (8%), Positives = 57/256 (22%), Gaps = 22/256 (8%)
Query: 335 DLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMS 394
D+ A G V + LL G V ++ +
Sbjct: 111 DIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGA-----SDDQLTKSA 165
Query: 395 NCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHV 454
+C + A + + S + Q+ A
Sbjct: 166 SCFHIHPGA-------AATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQ 218
Query: 455 GGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAP--VYSVCPHQKENIH 512
+ + + G + + + V + +
Sbjct: 219 ANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGI 278
Query: 513 FIFS-----TAVDGKIKAWLYDN-VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGD 566
I + + + VG + G ++ + DG+ ++ G
Sbjct: 279 MILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSA--GT 336
Query: 567 SHLVEWNESEGALKRT 582
L ++ + + +
Sbjct: 337 EVLDIYDAASDQDQSS 352
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 39.8 bits (91), Expect = 0.001
Identities = 17/161 (10%), Positives = 40/161 (24%), Gaps = 15/161 (9%)
Query: 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQA 402
+ + L V G+I D+ + + + +
Sbjct: 190 HPEDEFLINHPAYSQKAGRL-VWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA----- 243
Query: 403 AIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHV------GG 456
+VA+ + I + + + + + +
Sbjct: 244 --DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE 301
Query: 457 VNDLAFSYPNKQLCIVTCGDDKLIRVWDL-SGRKLFQFEGH 496
++ + S K L DK + + D SG +L
Sbjct: 302 IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 342
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 39.8 bits (92), Expect = 0.002
Identities = 23/197 (11%), Positives = 42/197 (21%), Gaps = 27/197 (13%)
Query: 362 LLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421
V G+I L D E + +V S G
Sbjct: 34 FSVTLRDAGQIALIDGSTYEIKTVLD--------------------TGYAVHISRLSASG 73
Query: 422 NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDA---HVGGVNDLAFSYPNKQLCIVTCGDDK 478
++ V +++ + EI + +K I
Sbjct: 74 RYLFVIGRDGKVNMIDLW-MKEPTTVAEIKIGSEARSIETSKMEGWEDKYA-IAGAYWPP 131
Query: 479 LIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGK--IKAWLYDNVGSRVD 536
+ D + + + Y + E + I VD
Sbjct: 132 QYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD 191
Query: 537 YDAPGLWCTTMLYSADG 553
Y TT + +
Sbjct: 192 YTDLNNLKTTEISAERF 208
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 39.0 bits (90), Expect = 0.003
Identities = 29/231 (12%), Positives = 57/231 (24%), Gaps = 25/231 (10%)
Query: 458 NDLAFSYPNKQLCIVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQKENIHFIFS 516
+ + L VT D I + D + + A + ++F
Sbjct: 22 TQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAV-HISRLSASGR--YLFV 78
Query: 517 TAVDGKIKAWLYDNVGSRVDY-----DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571
DGK+ T+ + + + V
Sbjct: 79 IGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGA---YWPPQYVI 135
Query: 572 WNESEGALKRTY-----------IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV 620
+ K+ + A ++ I+ E +I D ++
Sbjct: 136 MDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDL 195
Query: 621 NMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAI 671
N L +TE L + + A+ K++ L AI
Sbjct: 196 NNLKTTEISAE-RFLHDGGLDGSHRYFIT-AANARNKLVVIDTKEGKLVAI 244
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1130 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.98 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.97 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.94 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.94 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.94 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.94 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.93 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.92 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.92 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.88 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.86 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.85 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.85 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.84 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.81 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.81 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.78 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.75 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.74 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.73 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.73 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.55 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.53 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.51 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.45 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.45 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.35 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.22 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.09 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.08 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.08 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.07 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.06 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.92 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.91 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.9 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.89 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.83 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.8 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.8 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.76 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.74 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.66 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.62 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.33 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.23 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.23 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.93 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.69 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.63 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.6 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.57 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.57 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.55 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.53 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.52 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.5 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.46 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.41 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.41 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.37 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.35 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.27 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.26 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.24 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.22 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.18 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.05 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.85 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 96.66 | |
| d1uuja_ | 76 | Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te | 96.25 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.67 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 94.65 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 93.64 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 93.22 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 90.62 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 90.44 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 88.09 | |
| d2nxpa1 | 149 | TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId | 86.13 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 86.08 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 85.3 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.8e-36 Score=335.33 Aligned_cols=294 Identities=14% Similarity=0.189 Sum_probs=252.2
Q ss_pred ccceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEE
Q 001184 337 PRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVA 416 (1130)
Q Consensus 337 ~~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 416 (1130)
..+.++.++|...|+|++|||+|+ +||+|+ ||.|+|||+.++..... .......+|.+.|.+++
T Consensus 41 ~~~~~~~~~H~~~V~~v~fs~~g~-~latg~-dg~V~iWd~~~~~~~~~--------------~~~~~~~~h~~~I~~v~ 104 (337)
T d1gxra_ 41 HARQINTLNHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKSP--------------VSQLDCLNRDNYIRSCK 104 (337)
T ss_dssp EEEEEEEECCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCSC--------------SEEEECSCTTSBEEEEE
T ss_pred CceEEEECCCCCcEEEEEECCCCC-EEEEEE-CCEEEEEEccCCcccce--------------eEEeeecCCCCcEEEEE
Confidence 346677789999999999999998 589987 89999999987654431 11123568999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecC
Q 001184 417 WSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEG 495 (1130)
Q Consensus 417 ~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~ 495 (1130)
|+|||++|++|+.||+|++||+..... .....+.+|...|.+++|+|++. ++++++.|+.|++|| .+++......+
T Consensus 105 ~s~dg~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~~~~~~~~~~~~~~~ 181 (337)
T d1gxra_ 105 LLPDGCTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLVRQFQG 181 (337)
T ss_dssp ECTTSSEEEEEESSSEEEEEECCCC---EEEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EcCCCCEEEEeeccccccccccccccc-ccccccccccccccccccccccc--ccccccccccccccccccccccccccc
Confidence 999999999999999999999976543 23346788999999999999999 899999999999999 78888888899
Q ss_pred CCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC
Q 001184 496 HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1130)
Q Consensus 496 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1130)
|...|.+++|++ ++..+++++.|+.+++||+++.+....+. +...|.+++|+|+++++++++. ++.+++||+.
T Consensus 182 ~~~~v~~l~~s~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~----d~~i~i~d~~ 254 (337)
T d1gxra_ 182 HTDGASCIDISN--DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGME----SSNVEVLHVN 254 (337)
T ss_dssp CSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEET----TSCEEEEETT
T ss_pred cccccccccccc--cccccccccccccccccccccceeecccc-cccceEEEEEcccccccceecc----cccccccccc
Confidence 999999999965 55799999999999999999887666554 5668999999999999999886 8999999999
Q ss_pred CCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCc
Q 001184 576 EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQG 655 (1130)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~ 655 (1130)
+++... ...|.. .+.+++|+|++++|++++.||.|++||+.+++.+..+... ..|.+++|+|++++|++|+.||.
T Consensus 255 ~~~~~~-~~~~~~-~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~s~d~~~l~t~s~D~~ 329 (337)
T d1gxra_ 255 KPDKYQ-LHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISVDDKYIVTGSGDKK 329 (337)
T ss_dssp SSCEEE-ECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS---SCEEEEEECTTSCEEEEEETTSC
T ss_pred cccccc-cccccc-ccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCC---CCEEEEEEeCCCCEEEEEeCCCe
Confidence 887654 344444 7999999999999999999999999999999998877643 37999999999999999999999
Q ss_pred EEEEEc
Q 001184 656 IKILAN 661 (1130)
Q Consensus 656 i~iw~~ 661 (1130)
|+|||+
T Consensus 330 I~vWdl 335 (337)
T d1gxra_ 330 ATVYEV 335 (337)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999996
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1e-34 Score=318.93 Aligned_cols=284 Identities=22% Similarity=0.378 Sum_probs=258.6
Q ss_pred eccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCC
Q 001184 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1130)
Q Consensus 343 ~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 422 (1130)
.-+|.+.|++++|+|+++ +||||+.||+|+|||+.+++.+. .+.+|...|.+++|+|++.
T Consensus 13 L~GH~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~~-------------------~~~~h~~~V~~~~~~~~~~ 72 (317)
T d1vyhc1 13 LSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFER-------------------TLKGHTDSVQDISFDHSGK 72 (317)
T ss_dssp EECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCE-------------------EECCCSSCEEEEEECTTSS
T ss_pred EcCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCEEE-------------------EEeCCCCcEEEEeeecccc
Confidence 346999999999999998 69999999999999999988765 4779999999999999999
Q ss_pred EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEE
Q 001184 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVY 501 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~ 501 (1130)
++++++.++.+.+|+....+... .+.+|...+.++.|++++. .+++++.|+.+++|| .+++.+..+.+|...+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (317)
T d1vyhc1 73 LLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR 147 (317)
T ss_dssp EEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred ccccccccccccccccccccccc---ccccccccceeeeccCCCc--eEEeeccCcceeEeecccceeeeEEccCCCcce
Confidence 99999999999999988766443 5678999999999999999 799999999999999 88999999999999999
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCC--------------------CeEEEeee
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADG--------------------SRLFSCGT 561 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~--------------------~~l~~~~~ 561 (1130)
+++|++ ++.+|++++.|+.|++|++.+......+..+...+.++.|+|++ ..+++++.
T Consensus 148 ~~~~~~--~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (317)
T d1vyhc1 148 MVRPNQ--DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 225 (317)
T ss_dssp EEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET
T ss_pred eeeccc--CCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccC
Confidence 999865 55899999999999999999999998999899999999998764 35666664
Q ss_pred cCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEc
Q 001184 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN 641 (1130)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s 641 (1130)
++.|++||..+++.+..+.+|.. .+.+++++|++++|++|+.||.|++||+.+++++..+..|.. .|++++|+
T Consensus 226 ----d~~i~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~--~V~~~~~s 298 (317)
T d1vyhc1 226 ----DKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDFH 298 (317)
T ss_dssp ----TSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEEEEEC
T ss_pred ----CCEEEEEECCCCcEEEEEeCCCC-CEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCC--CEEEEEEc
Confidence 89999999999999999998766 899999999999999999999999999999999999887654 89999999
Q ss_pred CCCCEEEEEeCCCcEEEEE
Q 001184 642 KEGNLLVVTTADQGIKILA 660 (1130)
Q Consensus 642 ~~~~~l~~~~~dg~i~iw~ 660 (1130)
|++++|++|+.||+|+|||
T Consensus 299 ~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 299 KTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp SSSSCEEEEETTSEEEEEC
T ss_pred CCCCEEEEEeCCCeEEEeC
Confidence 9999999999999999996
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=8.5e-35 Score=317.93 Aligned_cols=287 Identities=16% Similarity=0.205 Sum_probs=243.6
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
+.+.+.+++++|+|+. ||.++ ++.|.+||+.+++... ++.+|...|++++|+|||++||
T Consensus 16 ~r~~~~~~a~~~~g~~-l~~~~-~~~v~i~~~~~~~~~~-------------------~~~~H~~~v~~~~~sp~g~~la 74 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTE-------------------IYTEHSHQTTVAKTSPSGYYCA 74 (311)
T ss_dssp CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCE-------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred CCCCeEEEEEcCCCCE-EEEEe-CCEEEEEECCCCceeE-------------------EEcCCCCCEEEEEEeCCCCeEe
Confidence 5557778999999995 66664 6689999999877654 5779999999999999999999
Q ss_pred EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcC--CCcEEEEe-cCCCeeeEecCCCcCEEE
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD--DKLIRVWD-LSGRKLFQFEGHEAPVYS 502 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~--d~~v~iwd-~~~~~~~~~~~h~~~v~~ 502 (1130)
+|+.||+|++||+.++..... ..+.+|.++|.+++|+|+++ ++++++. ++.++||+ .+++.+..+.+|...|.+
T Consensus 75 tg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~d~~--~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~ 151 (311)
T d1nr0a1 75 SGDVHGNVRIWDTTQTTHILK-TTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS 151 (311)
T ss_dssp EEETTSEEEEEESSSTTCCEE-EEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEE
T ss_pred ccccCceEeeeeeeccccccc-cccccccCcccccccccccc--cccccccccccccccccccccccccccccccccccc
Confidence 999999999999998775432 35788999999999999999 6777764 56799999 888889999999999999
Q ss_pred EeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEE
Q 001184 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582 (1130)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1130)
++|+|+.+ ..|++|+.|+.|++||+++.+....+..|..+|.++.|+|+++++++++. ++.|++||..++.....
T Consensus 152 v~~~~~~~-~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~----d~~v~~~d~~~~~~~~~ 226 (311)
T d1nr0a1 152 VDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTGV 226 (311)
T ss_dssp EEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEEE
T ss_pred ccccccce-eeecccccccccccccccccccccccccccccccccccCccccccccccc----ccccccccccccccccc
Confidence 99976543 36889999999999999999888899999999999999999999999986 89999999999888776
Q ss_pred Eecc------cCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcE
Q 001184 583 YIGF------RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGI 656 (1130)
Q Consensus 583 ~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i 656 (1130)
+... +...|.+++|+|++++|++|+.||.|+|||+++++++.++..+... ....+.+.+++..|++++.||.|
T Consensus 227 ~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~-~~~~~~~~~~~~~l~s~s~dG~i 305 (311)
T d1nr0a1 227 FEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI-EDQQLGIIWTKQALVSISANGFI 305 (311)
T ss_dssp CBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG-GGCEEEEEECSSCEEEEETTCCE
T ss_pred ccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCc-cceEEEEEecCCEEEEEECCCEE
Confidence 6432 2337999999999999999999999999999999999988765432 22334455556679999999999
Q ss_pred EEEEcC
Q 001184 657 KILANA 662 (1130)
Q Consensus 657 ~iw~~~ 662 (1130)
++||.+
T Consensus 306 ~~wd~d 311 (311)
T d1nr0a1 306 NFVNPE 311 (311)
T ss_dssp EEEETT
T ss_pred EEEeCC
Confidence 999963
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.6e-34 Score=317.40 Aligned_cols=305 Identities=15% Similarity=0.297 Sum_probs=263.0
Q ss_pred eeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEE
Q 001184 448 LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW 526 (1130)
Q Consensus 448 ~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vw 526 (1130)
.++.||.++|++++|+|+++ +|+||+.|++|+||| .+++.+.++.+|...|.++++++ ++.++++++.++.+.+|
T Consensus 11 ~~L~GH~~~I~~l~~sp~~~--~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~--~~~~~~~~~~~~~~~~~ 86 (317)
T d1vyhc1 11 YALSGHRSPVTRVIFHPVFS--VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH--SGKLLASCSADMTIKLW 86 (317)
T ss_dssp CEEECCSSCEEEEEECSSSS--EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECT--TSSEEEEEETTSCCCEE
T ss_pred EEEcCCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeec--ccccccccccccccccc
Confidence 36899999999999999999 899999999999999 88999999999999999999965 55899999999999999
Q ss_pred EccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEE
Q 001184 527 LYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAA 606 (1130)
Q Consensus 527 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 606 (1130)
+.........+..+...+.++.++++++.+++++. ++.+.+||+++++.+..+.+|.. .+.+++|++++++++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ 161 (317)
T d1vyhc1 87 DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR----DKTIKMWEVQTGYCVKTFTGHRE-WVRMVRPNQDGTLIASC 161 (317)
T ss_dssp ETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEET----TSEEEEEETTTCCEEEEEECCSS-CEEEEEECTTSSEEEEE
T ss_pred cccccccccccccccccceeeeccCCCceEEeecc----CcceeEeecccceeeeEEccCCC-cceeeecccCCCEEEEE
Confidence 99988888888888999999999999999999986 89999999999999999998766 78899999999999999
Q ss_pred eCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhccccccccccccccc
Q 001184 607 GEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMK 686 (1130)
Q Consensus 607 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1130)
+.|+.|++|+..+++....+..+.. .+.++.++|++......
T Consensus 162 ~~d~~v~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~------------------------------------ 203 (317)
T d1vyhc1 162 SNDQTVRVWVVATKECKAELREHRH--VVECISWAPESSYSSIS------------------------------------ 203 (317)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECCSCGGGGGG------------------------------------
T ss_pred eCCCeEEEEeeccceeeEEEecCCC--CceEEEEeeccccceee------------------------------------
Confidence 9999999999999988877765543 56666665532110000
Q ss_pred ccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCC
Q 001184 687 VPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDS 766 (1130)
Q Consensus 687 ~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 766 (1130)
T Consensus 204 -------------------------------------------------------------------------------- 203 (317)
T d1vyhc1 204 -------------------------------------------------------------------------------- 203 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCC
Q 001184 767 ASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDS 846 (1130)
Q Consensus 767 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~ 846 (1130)
............++.
T Consensus 204 -----------------------------------------------------------------~~~~~~~~~~~~~~~ 218 (317)
T d1vyhc1 204 -----------------------------------------------------------------EATGSETKKSGKPGP 218 (317)
T ss_dssp -----------------------------------------------------------------GCCSCC-------CC
T ss_pred -----------------------------------------------------------------ccccceeeeeccCCc
Confidence 000000111223456
Q ss_pred EEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEE
Q 001184 847 YVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAF 925 (1130)
Q Consensus 847 ~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~ 925 (1130)
++++++ |+.|++||+.+++++.++.+|...|.+++|+| ++++|++|+.||.|++||+.+++++.++.+|.+.|++++|
T Consensus 219 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~ 297 (317)
T d1vyhc1 219 FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF 297 (317)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEE
T ss_pred eeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECC-CCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence 777777 89999999999999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred ccCCCeEEEEeCCCcEEEEE
Q 001184 926 STNLNILVSSGSDAQLIFWN 945 (1130)
Q Consensus 926 s~dg~~L~s~s~Dg~i~vwd 945 (1130)
+|++++|++++.||+|+|||
T Consensus 298 s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 298 HKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CSSSSCEEEEETTSEEEEEC
T ss_pred cCCCCEEEEEeCCCeEEEeC
Confidence 99999999999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=7.6e-34 Score=322.82 Aligned_cols=308 Identities=18% Similarity=0.275 Sum_probs=240.8
Q ss_pred cceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEE
Q 001184 338 RAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1130)
Q Consensus 338 ~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 417 (1130)
..+...++|.+.|+|++|||||+ +||+|+ |++|+|||+.+++.+......... .............+|...|.+++|
T Consensus 53 ~~l~~~~~H~~~V~~l~fs~dg~-~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~V~~l~~ 129 (388)
T d1erja_ 53 VELHKSLDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAA-NKDPENLNTSSSPSSDLYIRSVCF 129 (388)
T ss_dssp EEEEEEEECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEE
T ss_pred eeeEeeCCCCCcEEEEEECCCCC-EEEEEe-CCeEEEEEecccceEeeecccccc-cccccccccccccCCCCCEEEEEE
Confidence 34556678999999999999998 589987 899999999999876531110000 000011112235578899999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCC
Q 001184 418 SPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGH 496 (1130)
Q Consensus 418 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h 496 (1130)
+|||++|++|+.||.|++||...++.+. .+.+|...|.+++|++++. .+++++.++.+++|| .+.........+
T Consensus 130 s~~~~~l~s~~~dg~v~i~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 204 (388)
T d1erja_ 130 SPDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLSIE 204 (388)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred CCCCCcceeccccccccccccccccccc---ccccccccccccccccccc--cccccccceeeeeeeccccccccccccc
Confidence 9999999999999999999999886554 5788999999999999999 799999999999999 555555555544
Q ss_pred CcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeee-------cCCCccEEEEEEecCCCeEEEeeecCCCCcEE
Q 001184 497 EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY-------DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHL 569 (1130)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1130)
....++.+.+ .++.+|++++.||.|++||.++......+ ..|...|.+++|+|++++|++++. ++.|
T Consensus 205 -~~~~~~~~~~-~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----d~~i 278 (388)
T d1erja_ 205 -DGVTTVAVSP-GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSV 278 (388)
T ss_dssp -SCEEEEEECS-TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEE
T ss_pred -cccccccccC-CCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEEC----CCcE
Confidence 4555555554 46689999999999999999987765543 345678999999999999999986 8999
Q ss_pred EEeeCCCCce------------eEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcce
Q 001184 570 VEWNESEGAL------------KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPR 637 (1130)
Q Consensus 570 ~~wd~~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~ 637 (1130)
++||+.++.. ......|. ..+.+++|+|++++|++|+.||.|++||+.+++++..+..|.. .|.+
T Consensus 279 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~--~V~~ 355 (388)
T d1erja_ 279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHK-DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVIS 355 (388)
T ss_dssp EEEEC---------------CEEEEEECCS-SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEE
T ss_pred EEEeccCCccccccccccccceeeeccccc-ceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCC--CEEE
Confidence 9999876543 23334433 3789999999999999999999999999999999999987654 7887
Q ss_pred EE------EcCCCCEEEEEeCCCcEEEEEcC
Q 001184 638 LR------FNKEGNLLVVTTADQGIKILANA 662 (1130)
Q Consensus 638 v~------~s~~~~~l~~~~~dg~i~iw~~~ 662 (1130)
++ |+|++.+|++|+.||+|+||+++
T Consensus 356 ~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 356 VAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 76 46789999999999999999974
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.3e-33 Score=311.64 Aligned_cols=282 Identities=13% Similarity=0.182 Sum_probs=239.4
Q ss_pred CccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCC
Q 001184 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1130)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1130)
|...|.+++|+|+|++|++++ ||.|++||+........ +......+|...|.+++|+|||
T Consensus 50 H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~-------------------~~~~~~~~h~~~I~~v~~s~dg 109 (337)
T d1gxra_ 50 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSP-------------------VSQLDCLNRDNYIRSCKLLPDG 109 (337)
T ss_dssp CSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSC-------------------SEEEECSCTTSBEEEEEECTTS
T ss_pred CCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccce-------------------eEEeeecCCCCcEEEEEEcCCC
Confidence 889999999999999999987 89999999865322110 0001112688999999999999
Q ss_pred CEEEEEe-CCeEEEEECCC--ceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeE
Q 001184 846 SYVMSAG-GGKVSLFNMMN--FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITG 922 (1130)
Q Consensus 846 ~~la~~~-dg~i~iwd~~~--~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 922 (1130)
++|++++ ||.|++||+.. .+....+..|...+.+++|+| ++.++++++.|+.|++|++.++++.....+|...|.+
T Consensus 110 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~ 188 (337)
T d1gxra_ 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 188 (337)
T ss_dssp SEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred CEEEEeeccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence 9999998 89999999874 456677888999999999999 8999999999999999999999999999999999999
Q ss_pred EEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE-EcCCcEEEEECCCceeeee
Q 001184 923 LAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGSKMECIRQ 1001 (1130)
Q Consensus 923 l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~ 1001 (1130)
++|++++..+++++.|+.+++||+.+++..... .+...+.+++|+|++.++++ +.|+.+++||+.+++....
T Consensus 189 l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~-------~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 261 (337)
T d1gxra_ 189 IDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL 261 (337)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-------ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE
T ss_pred ccccccccccccccccccccccccccceeeccc-------ccccceEEEEEcccccccceeccccccccccccccccccc
Confidence 999999999999999999999999986643222 13378999999999999998 6799999999998887643
Q ss_pred eecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEE
Q 001184 1002 WVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVG 1081 (1130)
Q Consensus 1002 ~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 1081 (1130)
. .|...|++++|+|||++|++++.||.|++||+.+++.+..+. | ...+.+++|+| ++.+|++|
T Consensus 262 -~---~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~----------~--~~~v~~~~~s~-d~~~l~t~ 324 (337)
T d1gxra_ 262 -H---LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK----------E--SSSVLSCDISV-DDKYIVTG 324 (337)
T ss_dssp -C---CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----------C--SSCEEEEEECT-TSCEEEEE
T ss_pred -c---ccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc----------C--CCCEEEEEEeC-CCCEEEEE
Confidence 2 347899999999999999999999999999999998876654 2 23456788999 47899999
Q ss_pred eCCCcEEEEeC
Q 001184 1082 LTDGSVKVIEP 1092 (1130)
Q Consensus 1082 ~~Dg~v~vW~~ 1092 (1130)
+.||+|+|||+
T Consensus 325 s~D~~I~vWdl 335 (337)
T d1gxra_ 325 SGDKKATVYEV 335 (337)
T ss_dssp ETTSCEEEEEE
T ss_pred eCCCeEEEEEE
Confidence 99999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5e-33 Score=316.00 Aligned_cols=333 Identities=15% Similarity=0.269 Sum_probs=246.3
Q ss_pred EEEeCCCeEEEEEecCCcccee-eeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEE
Q 001184 425 GVAFTKHLIHLYTYQGSNDLCQ-SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYS 502 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~-~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~ 502 (1130)
..+..++.+.+|+....+.... .....+|.+.|++++|+|||+ +|++|+ |++|+||| .+++.+..+..+......
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~--~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~ 108 (388)
T d1erja_ 32 LKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGE--YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKD 108 (388)
T ss_dssp SEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSS--EEEEEC-BSCEEEEETTTCCEEEEECC-------
T ss_pred cccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCC--EEEEEe-CCeEEEEEecccceEeeeccccccccc
Confidence 3456778889999776554331 123346999999999999999 789887 89999999 889998888776543322
Q ss_pred EeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEE
Q 001184 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582 (1130)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1130)
... + .......+...|.+++|+|+|++|++++. ++.|++||...++.+..
T Consensus 109 ~~~--------~------------------~~~~~~~~~~~V~~l~~s~~~~~l~s~~~----dg~v~i~~~~~~~~~~~ 158 (388)
T d1erja_ 109 PEN--------L------------------NTSSSPSSDLYIRSVCFSPDGKFLATGAE----DRLIRIWDIENRKIVMI 158 (388)
T ss_dssp ------------------------------------CCCCBEEEEEECTTSSEEEEEET----TSCEEEEETTTTEEEEE
T ss_pred ccc--------c------------------ccccccCCCCCEEEEEECCCCCcceeccc----ccccccccccccccccc
Confidence 110 0 01112346667999999999999999986 89999999999999999
Q ss_pred EecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEc-CCCCEEEEEeCCCcEEEEEc
Q 001184 583 YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN-KEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s-~~~~~l~~~~~dg~i~iw~~ 661 (1130)
+.+|.. .+.++.+++++..+++++.++.+++||..+.........+.. ..++.++ +++.+|++++.|+.|++|+.
T Consensus 159 ~~~h~~-~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~i~~~ 234 (388)
T d1erja_ 159 LQGHEQ-DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG---VTTVAVSPGDGKYIAAGSLDRAVRVWDS 234 (388)
T ss_dssp ECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC---EEEEEECSTTCCEEEEEETTSCEEEEET
T ss_pred cccccc-cccccccccccccccccccceeeeeeeccccccccccccccc---cccccccCCCCCeEEEEcCCCeEEEeec
Confidence 988766 899999999999999999999999999999888777665443 4455555 48899999999999999998
Q ss_pred CCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCc
Q 001184 662 ADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKT 741 (1130)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 741 (1130)
.++... ..+.. .
T Consensus 235 ~~~~~~-~~~~~-------------------------~------------------------------------------ 246 (388)
T d1erja_ 235 ETGFLV-ERLDS-------------------------E------------------------------------------ 246 (388)
T ss_dssp TTCCEE-EEEC---------------------------------------------------------------------
T ss_pred ccCccc-eeecc-------------------------c------------------------------------------
Confidence 765211 00000 0
Q ss_pred cceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCC
Q 001184 742 KPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNG 821 (1130)
Q Consensus 742 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~ 821 (1130)
.....
T Consensus 247 ------------------~~~~~--------------------------------------------------------- 251 (388)
T d1erja_ 247 ------------------NESGT--------------------------------------------------------- 251 (388)
T ss_dssp ----------------------C---------------------------------------------------------
T ss_pred ------------------ccccc---------------------------------------------------------
Confidence 00001
Q ss_pred cceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCc------------eeEEEEeCCCCCeEEEEEeCCCCc
Q 001184 822 LLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNF------------KVMTTFMSPPPASTFLAFHPQDNN 888 (1130)
Q Consensus 822 ~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~------------~~~~~~~~~~~~i~~l~~sp~~~~ 888 (1130)
+|...|.+++|+|++++|++++ ||.|++||+.++ ........|...|.+++|+| +++
T Consensus 252 ---------~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~ 321 (388)
T d1erja_ 252 ---------GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDE 321 (388)
T ss_dssp ---------CCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECG-GGC
T ss_pred ---------CCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECC-CCC
Confidence 2444445555555555555444 455555554332 33445567888999999999 899
Q ss_pred EEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEE------ccCCCeEEEEeCCCcEEEEECC
Q 001184 889 IIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAF------STNLNILVSSGSDAQLIFWNTD 947 (1130)
Q Consensus 889 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~------s~dg~~L~s~s~Dg~i~vwd~~ 947 (1130)
+|++|+.||.|++||+.+++++.++++|.+.|+++++ +||+.+|+|++.||+|+||+++
T Consensus 322 ~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 322 YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 9999999999999999999999999999999999985 5789999999999999999985
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.5e-32 Score=302.36 Aligned_cols=290 Identities=19% Similarity=0.263 Sum_probs=250.5
Q ss_pred eeeec-cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEc
Q 001184 340 VACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1130)
Q Consensus 340 ~~~~~-~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 418 (1130)
..++| +|.+.|++++|+|+++ +||+|+.||+|+|||+.+++.+. .+..|...|.+++|+
T Consensus 47 ~~~tL~GH~~~I~~l~~s~~~~-~l~sgs~Dg~v~iWd~~~~~~~~-------------------~~~~~~~~v~~v~~~ 106 (340)
T d1tbga_ 47 TRRTLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVH-------------------AIPLRSSWVMTCAYA 106 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEE-------------------EEECSCSCEEEEEEC
T ss_pred eeEEECCCCCCEEEEEECCCCC-EEEEEECCCceeeeecccceeEE-------------------EEecccccEEeeEee
Confidence 34455 5999999999999998 59999999999999999998775 467899999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCccc-eeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCC
Q 001184 419 PDGNFIGVAFTKHLIHLYTYQGSNDL-CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGH 496 (1130)
Q Consensus 419 pdg~~las~~~d~~i~vwd~~~~~~~-~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h 496 (1130)
|+++++++|+.|+.+++|+....... .....+.+|...........+. .+..+..|.....|+ ...........+
T Consensus 107 ~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (340)
T d1tbga_ 107 PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTGH 183 (340)
T ss_dssp TTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT---EEEEEETTTEEEEEETTTTEEEEEEECC
T ss_pred ccceeeeeecccceeecccccccccccccceeccccccccccccccccc---cccccccccccccccccccccccccccc
Confidence 99999999999999999998765432 2334567788877777666654 478888899999999 666666777778
Q ss_pred CcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC
Q 001184 497 EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE 576 (1130)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1130)
...+....+.+ ...++++++.|+.|++||+++......+..|...|.+++|+|++++|++++. ++.|++||...
T Consensus 184 ~~~~~~~~~~~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~----d~~i~~~~~~~ 257 (340)
T d1tbga_ 184 TGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDLRA 257 (340)
T ss_dssp SSCEEEEEECT--TSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTT
T ss_pred ceeEeeecccc--ccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeC----CCeEEEEeecc
Confidence 88888887754 4479999999999999999999999999999999999999999999999986 89999999999
Q ss_pred CceeEEEecc-cCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCc
Q 001184 577 GALKRTYIGF-RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQG 655 (1130)
Q Consensus 577 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~ 655 (1130)
......+... ....+.+++|+|++++|++|+.||.|++||+.+++.+..+..|.. .|.+++|+|++++|++|+.||.
T Consensus 258 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~--~V~~l~~s~d~~~l~s~s~Dg~ 335 (340)
T d1tbga_ 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSWDSF 335 (340)
T ss_dssp TEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTSC
T ss_pred cccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEeCCCCEEEEEccCCE
Confidence 8887776432 334688999999999999999999999999999999999887654 8999999999999999999999
Q ss_pred EEEEE
Q 001184 656 IKILA 660 (1130)
Q Consensus 656 i~iw~ 660 (1130)
|++||
T Consensus 336 v~iWd 340 (340)
T d1tbga_ 336 LKIWN 340 (340)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=7.8e-33 Score=311.65 Aligned_cols=291 Identities=15% Similarity=0.101 Sum_probs=232.0
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
+.++|+|++|||||+ +||+|+.||.|+|||+++++.... ..+++|.+.|.+++|+|++++||
T Consensus 6 ~~~pIt~~~~s~dg~-~la~~~~~~~i~iw~~~~~~~~~~-----------------~~l~gH~~~V~~l~fsp~~~~l~ 67 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQV-----------------HELKEHNGQVTGVDWAPDSNRIV 67 (371)
T ss_dssp CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEEETTTTEEE
T ss_pred CCCCeEEEEECCCCC-EEEEEeCCCEEEEEECCCCCEEEE-----------------EEecCCCCCEEEEEECCCCCEEE
Confidence 347899999999998 589999999999999987764321 25789999999999999999999
Q ss_pred EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCe----eeEecCCCcCE
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRK----LFQFEGHEAPV 500 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~----~~~~~~h~~~v 500 (1130)
+|+.|++|+|||+.++... ....+.+|...|.+++|+|+++ .+++|+.|++|++|+ ..... .....+|...|
T Consensus 68 s~s~D~~i~vWd~~~~~~~-~~~~~~~~~~~v~~i~~~p~~~--~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v 144 (371)
T d1k8kc_ 68 TCGTDRNAYVWTLKGRTWK-PTLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV 144 (371)
T ss_dssp EEETTSCEEEEEEETTEEE-EEEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCE
T ss_pred EEECCCeEEEEeecccccc-cccccccccccccccccccccc--cceeecccCcceeeeeeccccccccccccccccccc
Confidence 9999999999999886533 3345678999999999999999 899999999999999 44332 33456799999
Q ss_pred EEEeecccCCccEEEEEecCCcEEEEEccCCc------------------ceeeecCCCccEEEEEEecCCCeEEEeeec
Q 001184 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG------------------SRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
.+++|+| ++.+|++|+.|++|++|+..... .......+...|.+++|+|+|++|++++.
T Consensus 145 ~~v~~~p--~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~- 221 (371)
T d1k8kc_ 145 LSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH- 221 (371)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET-
T ss_pred ccccccc--cccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccccc-
Confidence 9999965 56899999999999999976432 23344567778999999999999999986
Q ss_pred CCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEec--------------
Q 001184 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA-------------- 628 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------------- 628 (1130)
++.|++||..+++.+..+..|.. ++.+++|+|+++++++| .|+.+++|..........+..
T Consensus 222 ---d~~i~iwd~~~~~~~~~~~~~~~-~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (371)
T d1k8kc_ 222 ---DSTVCLADADKKMAVATLASETL-PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLT 296 (371)
T ss_dssp ---TTEEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------C
T ss_pred ---CCcceEEeeecccceeeeecccc-cceeeeecCCCCEEEEE-cCCceEEEEeeCCCceEEEeeeecCcccccccccc
Confidence 89999999999999999998765 79999999998776654 577776665433211110000
Q ss_pred -------------------------cCCCCCcceEEEcCCC----CEEEEEeCCCcEEEEEcCCCc
Q 001184 629 -------------------------EGGLPSLPRLRFNKEG----NLLVVTTADQGIKILANADGL 665 (1130)
Q Consensus 629 -------------------------~~~~~~i~~v~~s~~~----~~l~~~~~dg~i~iw~~~~~~ 665 (1130)
..|...|+++++.+.+ ..+++++.||.|++||+++.+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~~ 362 (371)
T d1k8kc_ 297 ARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362 (371)
T ss_dssp HHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcCh
Confidence 0134468888887743 468999999999999986543
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.6e-32 Score=298.04 Aligned_cols=288 Identities=10% Similarity=0.138 Sum_probs=237.6
Q ss_pred eeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhh
Q 001184 590 SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALR 669 (1130)
Q Consensus 590 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 669 (1130)
....++++|+|+.|+.++ ++.+.+||+.+++....+..|.+ .|++++|+|+|++|++|+.||.|++|++..+.....
T Consensus 19 ~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~--~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~ 95 (311)
T d1nr0a1 19 TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSH--QTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK 95 (311)
T ss_dssp CCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSS--CEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE
T ss_pred CeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCC--CEEEEEEeCCCCeEeccccCceEeeeeeeccccccc
Confidence 455688999999998875 56799999999998888876554 899999999999999999999999999865410000
Q ss_pred hhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccc
Q 001184 670 AIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEI 749 (1130)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~ 749 (1130)
T Consensus 96 -------------------------------------------------------------------------------- 95 (311)
T d1nr0a1 96 -------------------------------------------------------------------------------- 95 (311)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCC
Q 001184 750 VDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVP 829 (1130)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 829 (1130)
. . +
T Consensus 96 -----------------------~----------------~-------------------------------------~- 98 (311)
T d1nr0a1 96 -----------------------T----------------T-------------------------------------I- 98 (311)
T ss_dssp -----------------------E----------------E-------------------------------------E-
T ss_pred -----------------------c----------------c-------------------------------------c-
Confidence 0 0 0
Q ss_pred CCCCCceeEEEEecCCCEEEEEeC---CeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeec
Q 001184 830 ENAEDVVPCVALSKNDSYVMSAGG---GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV 906 (1130)
Q Consensus 830 ~~~~~~i~~l~~s~dg~~la~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 906 (1130)
..|...|.+++|+|++++++++++ ..+++|++++++....+.+|...|++++|+|++..+|++|+.||.|++||+++
T Consensus 99 ~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~ 178 (311)
T d1nr0a1 99 PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP 178 (311)
T ss_dssp ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT
T ss_pred ccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccc
Confidence 036778999999999999988873 45999999999999999999999999999994444689999999999999999
Q ss_pred CeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEec-cCCCCCCCeEEEEEcCCCcEEEE-Ec
Q 001184 907 DEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQL-PAGKLPVGETRVQFHSDQVRLLV-NH 984 (1130)
Q Consensus 907 ~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~~-~~ 984 (1130)
++....+.+|..+|++++|+|++++|++++.|+.|++||+..++......... ....+...|.+++|+|++++|++ +.
T Consensus 179 ~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~ 258 (311)
T d1nr0a1 179 FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA 258 (311)
T ss_dssp BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET
T ss_pred cccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeC
Confidence 99999999999999999999999999999999999999999876543322111 11223478999999999999998 56
Q ss_pred CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 001184 985 ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039 (1130)
Q Consensus 985 d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~ 1039 (1130)
|+.|+|||+.+++++..+..+..+...+.++.|+ +.+|++++.||.|++||.+
T Consensus 259 Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~--~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 259 DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT--KQALVSISANGFINFVNPE 311 (311)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC--SSCEEEEETTCCEEEEETT
T ss_pred CCeEEEEECCCCcEEEEEECCCCccceEEEEEec--CCEEEEEECCCEEEEEeCC
Confidence 9999999999999999987775444455555554 5679999999999999974
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.1e-32 Score=302.12 Aligned_cols=323 Identities=19% Similarity=0.325 Sum_probs=250.5
Q ss_pred eecCCCccE-EEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001184 404 IVKDSSISV-SRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRV 482 (1130)
Q Consensus 404 ~~~~h~~~V-~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~i 482 (1130)
+++||...| +|++| ||++||+|+.||+|+|||+.+++.+. ++.+|.+.|++++|+|++ +|++|+.|++|++
T Consensus 7 tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~l~~s~~~---~l~s~s~D~~i~i 78 (355)
T d1nexb2 7 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRV 78 (355)
T ss_dssp EEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEE---EEECCSSCEEEEEEETTT---EEEEEETTCCEEE
T ss_pred EECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEE---EEECCCCCEEEEEEcCCC---EEEEEeccccccc
Confidence 689998876 55554 68899999999999999999987654 688999999999999864 6899999999999
Q ss_pred Ee-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCC------------C--------
Q 001184 483 WD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP------------G-------- 541 (1130)
Q Consensus 483 wd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------------~-------- 541 (1130)
|+ ..+........+............+++..+++++.|+.|++||++........... .
T Consensus 79 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (355)
T d1nexb2 79 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 158 (355)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEE
T ss_pred ccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeee
Confidence 99 66666666665555555555555677789999999999999998765443211100 0
Q ss_pred -ccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 001184 542 -LWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV 620 (1130)
Q Consensus 542 -~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 620 (1130)
+......+.+++++++++.. ++.|++||..+++.+....++.. .+.++.++++++++++++.|+.|++||..++
T Consensus 159 ~~~~~v~~~~~~~~~~~~~~~----d~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~ 233 (355)
T d1nexb2 159 GHMASVRTVSGHGNIVVSGSY----DNTLIVWDVAQMKCLYILSGHTD-RIYSTIYDHERKRCISASMDTTIRIWDLENG 233 (355)
T ss_dssp CCSSCEEEEEEETTEEEEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEEETTTTEEEEEETTSCEEEEETTTC
T ss_pred eccccccccccccceeeeecc----cceeeeeecccccceeeeecccc-ccccccccccceeeecccccceEEeeecccc
Confidence 01112345677888888875 88999999999999888887665 7888999999999999999999999999999
Q ss_pred ceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeecccccc
Q 001184 621 NMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVL 700 (1130)
Q Consensus 621 ~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~ 700 (1130)
..+..+..|.. .|.+++++ +++|++++.||.|++||+.+.....
T Consensus 234 ~~~~~~~~h~~--~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~-------------------------------- 277 (355)
T d1nexb2 234 ELMYTLQGHTA--LVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF-------------------------------- 277 (355)
T ss_dssp CEEEEECCCSS--CCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEE--------------------------------
T ss_pred ccccccccccc--cccccccc--cceeeeeecccccccccccccceec--------------------------------
Confidence 99988876654 78999987 4689999999999999976441000
Q ss_pred ccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCC
Q 001184 701 SKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGI 780 (1130)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~ 780 (1130)
T Consensus 278 -------------------------------------------------------------------------------- 277 (355)
T d1nexb2 278 -------------------------------------------------------------------------------- 277 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEE
Q 001184 781 GILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFN 860 (1130)
Q Consensus 781 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd 860 (1130)
.. .+.......+++++++++++|+||.|++||
T Consensus 278 ---~~---------------------------------------------~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd 309 (355)
T d1nexb2 278 ---SY---------------------------------------------HHTNLSAITTFYVSDNILVSGSENQFNIYN 309 (355)
T ss_dssp ---EE---------------------------------------------ECTTCCCCCEEEECSSEEEEEETTEEEEEE
T ss_pred ---cc---------------------------------------------ccCCceEEEEEcCCCCEEEEEeCCEEEEEE
Confidence 00 001111123567888999998899999999
Q ss_pred CCCceeEE-EEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEee
Q 001184 861 MMNFKVMT-TFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR 905 (1130)
Q Consensus 861 ~~~~~~~~-~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~ 905 (1130)
+++++++. .+.+|...|.+++|+| + .++++++.||+++||.++
T Consensus 310 ~~tg~~~~~~~~~~~~~V~~v~~~~-~-~~~~~~s~dg~~~l~~~d 353 (355)
T d1nexb2 310 LRSGKLVHANILKDADQIWSVNFKG-K-TLVAAVEKDGQSFLEILD 353 (355)
T ss_dssp TTTCCBCCSCTTTTCSEEEEEEEET-T-EEEEEEESSSCEEEEEEE
T ss_pred CCCCCEEEEEecCCCCCEEEEEEcC-C-eEEEEEECCCcEEEEEEe
Confidence 99999875 4668889999999998 5 578889999998776543
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=6.6e-32 Score=294.30 Aligned_cols=289 Identities=11% Similarity=0.120 Sum_probs=224.9
Q ss_pred eeeec-cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEc
Q 001184 340 VACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1130)
Q Consensus 340 ~~~~~-~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 418 (1130)
+.+++ +|.+.|++++|+|||+ +|++|+.||+|+|||+++++.+.. ...+|...|++++|+
T Consensus 4 ~~~~~~GH~~~V~~l~~s~dg~-~l~s~s~Dg~v~vWd~~~~~~~~~------------------~~~~h~~~v~~v~~~ 64 (299)
T d1nr0a2 4 IDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRV------------------FPDVHATMITGIKTT 64 (299)
T ss_dssp EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEC------------------SSCSCSSCEEEEEEC
T ss_pred cceEcCCCCCCcEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEE------------------EcCCCCCcEEEEEee
Confidence 44555 5999999999999998 599999999999999999887652 235799999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCCCc
Q 001184 419 PDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEA 498 (1130)
Q Consensus 419 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~~ 498 (1130)
|+|+++ +++.|+.+++|+...............|...+.+++|+++++ +++++ .++.+++|+.. +..... ...
T Consensus 65 ~~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~~~~~-~~~~i~~~~~~-~~~~~~--~~~ 137 (299)
T d1nr0a2 65 SKGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD--IAVAA-CYKHIAIYSHG-KLTEVP--ISY 137 (299)
T ss_dssp TTSCEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS--CEEEE-ESSEEEEEETT-EEEEEE--CSS
T ss_pred ccceee-cccceeeEEEeccCCccccccccccccccccccccccccccc--ccccc-ccccccccccc-cccccc--ccc
Confidence 999755 556789999999876543222223456788899999999998 44444 46789999932 222222 345
Q ss_pred CEEEEeecccCCccEEEEEecCCcEEEEEccCCccee-eecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCC
Q 001184 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV-DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577 (1130)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1130)
.+.+++|++ ++.++++++.||.|++||+++..... ....|...|.+++|+|++++|++++. ++.|++||..++
T Consensus 138 ~~~~~~~s~--~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~~~~~~~~ 211 (299)
T d1nr0a2 138 NSSCVALSN--DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ----SRKVIPYSVANN 211 (299)
T ss_dssp CEEEEEECT--TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET----TSCEEEEEGGGT
T ss_pred ccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccc----cccccccccccc
Confidence 577888865 56899999999999999998766543 44557788999999999999999876 889999999877
Q ss_pred ceeE---EEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCC-CCCcceEEEcCCCCEEEEEeCC
Q 001184 578 ALKR---TYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGG-LPSLPRLRFNKEGNLLVVTTAD 653 (1130)
Q Consensus 578 ~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~i~~v~~s~~~~~l~~~~~d 653 (1130)
.... .+.+|.. .+.+++|+|++++|++|+.||.|++||+.++..........+ ...+.++.+ +++.+|++++.|
T Consensus 212 ~~~~~~~~~~~h~~-~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D 289 (299)
T d1nr0a2 212 FELAHTNSWTFHTA-KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQD 289 (299)
T ss_dssp TEESCCCCCCCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETT
T ss_pred cccccccccccccc-ccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCC
Confidence 6543 3444444 899999999999999999999999999998765544433333 334555554 567899999999
Q ss_pred CcEEEEEcC
Q 001184 654 QGIKILANA 662 (1130)
Q Consensus 654 g~i~iw~~~ 662 (1130)
+.|++||+.
T Consensus 290 ~~i~iWdl~ 298 (299)
T d1nr0a2 290 SNIKFWNVP 298 (299)
T ss_dssp SCEEEEECC
T ss_pred CEEEEEecc
Confidence 999999973
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.7e-31 Score=295.12 Aligned_cols=286 Identities=14% Similarity=0.224 Sum_probs=250.0
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
+++||.+.|++++|+||+++||+|+.||+|+|||+.+++.+. .+.+|...|.+++|+|++. ++++|+.|+.+++|
T Consensus 50 tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~v~~~~~~~--~l~~~~~d~~i~~~ 124 (340)
T d1tbga_ 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIY 124 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE---EEECSCSCEEEEEECTTSS--EEEEEETTCCEEEE
T ss_pred EECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEE---EEecccccEEeeEeeccce--eeeeecccceeecc
Confidence 588999999999999999999999999999999999987554 6788999999999999999 89999999999999
Q ss_pred e-cC----CCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEE
Q 001184 484 D-LS----GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFS 558 (1130)
Q Consensus 484 d-~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1130)
+ .. ......+.+|........... +..+.....|.....|.................+....+.+.+.++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (340)
T d1tbga_ 125 NLKTREGNVRVSRELAGHTGYLSCCRFLD---DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp ESSSSCSCCCEEEEECCCSSCEEEEEEEE---TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred cccccccccccceeccccccccccccccc---ccccccccccccccccccccccccccccccceeEeeeccccccceeEE
Confidence 9 32 234566778888777666533 257888899999999998888777777788888999999999999999
Q ss_pred eeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceE
Q 001184 559 CGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1130)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v 638 (1130)
++. ++.|++||+++++.+..+.+|.. .+.+++|+|++++|++|+.||.|++||+.....+..+....+...+.++
T Consensus 202 ~~~----d~~v~i~d~~~~~~~~~~~~h~~-~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~ 276 (340)
T d1tbga_ 202 GAC----DASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276 (340)
T ss_dssp EET----TTEEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred eec----CceEEEEECCCCcEEEEEeCCCC-CeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEE
Confidence 876 89999999999999999998766 8999999999999999999999999999999988888777776789999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccc
Q 001184 639 RFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTIL 718 (1130)
Q Consensus 639 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~ 718 (1130)
+|+|++++|++|+.||.|++||+.++. ....+
T Consensus 277 ~~s~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~----------------------------------------------- 308 (340)
T d1tbga_ 277 SFSKSGRLLLAGYDDFNCNVWDALKAD-RAGVL----------------------------------------------- 308 (340)
T ss_dssp EECSSSCEEEEEETTSCEEEEETTTCC-EEEEE-----------------------------------------------
T ss_pred EECCCCCEEEEEECCCEEEEEECCCCc-EEEEE-----------------------------------------------
Confidence 999999999999999999999987651 11110
Q ss_pred cCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeee
Q 001184 719 NGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWK 795 (1130)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~ 795 (1130)
.+|...|.+++|+|++..|++++.||.|++||
T Consensus 309 ---------------------------------------------~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 309 ---------------------------------------------AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ---------------------------------------------CCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ---------------------------------------------cCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 23778899999999999999999999999996
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.5e-31 Score=297.16 Aligned_cols=345 Identities=13% Similarity=0.143 Sum_probs=263.2
Q ss_pred eeeecCCCccE-EEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcE
Q 001184 534 RVDYDAPGLWC-TTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQI 612 (1130)
Q Consensus 534 ~~~~~~~~~~v-~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 612 (1130)
+.++.+|...| +++ ++++++|++++. |+.|++||..+++.+.++.+|.. .|.+++|+|+ ++|++|+.|+.|
T Consensus 5 ~~tL~GH~~~vitc~--~~~~~~l~tgs~----Dg~i~vWd~~~~~~~~~l~~H~~-~V~~l~~s~~-~~l~s~s~D~~i 76 (355)
T d1nexb2 5 RTTLRGHMTSVITCL--QFEDNYVITGAD----DKMIRVYDSINKKFLLQLSGHDG-GVWALKYAHG-GILVSGSTDRTV 76 (355)
T ss_dssp EEEEECCSSSCEEEE--EEETTEEEEEET----TTEEEEEETTTTEEEEEEECCSS-CEEEEEEETT-TEEEEEETTCCE
T ss_pred cEEECCcCCCcEEEE--EECCCEEEEEeC----CCeEEEEECCCCcEEEEEECCCC-CEEEEEEcCC-CEEEEEeccccc
Confidence 34577887765 554 556889999986 89999999999999999999876 8999999985 589999999999
Q ss_pred EEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccce
Q 001184 613 KFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAV 692 (1130)
Q Consensus 613 ~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1130)
++|+....+..................+++++..+++++.|+.|++|++........ ......
T Consensus 77 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~-~~~~~~---------------- 139 (355)
T d1nexb2 77 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD-HGEEHD---------------- 139 (355)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC------------C----------------
T ss_pred ccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceecc-ccccce----------------
Confidence 999999998887776665544556677889999999999999999999876521111 000000
Q ss_pred eeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEE
Q 001184 693 VTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVAR 772 (1130)
Q Consensus 693 ~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 772 (1130)
...
T Consensus 140 -----------------------------------------------------------------------------~~~ 142 (355)
T d1nexb2 140 -----------------------------------------------------------------------------YPL 142 (355)
T ss_dssp -----------------------------------------------------------------------------CCE
T ss_pred -----------------------------------------------------------------------------ecc
Confidence 000
Q ss_pred EEEeccCC-eEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEE
Q 001184 773 LLYTNSGI-GILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSA 851 (1130)
Q Consensus 773 l~~s~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~ 851 (1130)
....+... ..+.. . ..|...+ ..+.+++++++++
T Consensus 143 ~~~~~~~~~~~~~~--------~-----------------------------------~~~~~~v--~~~~~~~~~~~~~ 177 (355)
T d1nexb2 143 VFHTPEENPYFVGV--------L-----------------------------------RGHMASV--RTVSGHGNIVVSG 177 (355)
T ss_dssp EESCTTTCTTEEEE--------E-----------------------------------ECCSSCE--EEEEEETTEEEEE
T ss_pred ceeccccccceeee--------e-----------------------------------eeccccc--cccccccceeeee
Confidence 00000000 00000 0 0133333 3455678888888
Q ss_pred e-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCC
Q 001184 852 G-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLN 930 (1130)
Q Consensus 852 ~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~ 930 (1130)
. |+.|++||+.+++.+....++...+.++.++| ++.++++++.|+.|++||+.++..+..+.+|...|.+++|+ ++
T Consensus 178 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~ 254 (355)
T d1nexb2 178 SYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DK 254 (355)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SS
T ss_pred cccceeeeeecccccceeeeeccccccccccccc-cceeeecccccceEEeeeccccccccccccccccccccccc--cc
Confidence 7 89999999999999999999999999999999 88999999999999999999999999999999999999996 46
Q ss_pred eEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCC
Q 001184 931 ILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSS 1010 (1130)
Q Consensus 931 ~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 1010 (1130)
+|++++.||.|++||+.+...... .+.........+++++.+++++.|+.|++||+++++.+..... +|..
T Consensus 255 ~l~~~~~dg~i~iwd~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~--~~~~ 325 (355)
T d1nexb2 255 FLVSAAADGSIRGWDANDYSRKFS-------YHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANIL--KDAD 325 (355)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEE-------EECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTT--TTCS
T ss_pred eeeeeecccccccccccccceecc-------cccCCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEec--CCCC
Confidence 999999999999999988543211 1121233345678899999999999999999999998864332 2378
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEeC
Q 001184 1011 PISSAAYSCNSQLIYATFTDGSIGVFDA 1038 (1130)
Q Consensus 1011 ~v~~v~~s~dg~~l~t~~~Dg~i~vwd~ 1038 (1130)
+|++++|+|+ .++++++.||.++||.+
T Consensus 326 ~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 326 QIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp EEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred CEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 9999999987 57888899999777643
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=8.3e-31 Score=285.49 Aligned_cols=296 Identities=15% Similarity=0.153 Sum_probs=222.9
Q ss_pred CceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccc
Q 001184 620 VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPV 699 (1130)
Q Consensus 620 ~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 699 (1130)
|+..+.+.+|.. .|++++|+|++++|++|+.||.|++||+.++.. .+.+
T Consensus 2 g~~~~~~~GH~~--~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~-~~~~---------------------------- 50 (299)
T d1nr0a2 2 GSIDQVRYGHNK--AITALSSSADGKTLFSADAEGHINSWDISTGIS-NRVF---------------------------- 50 (299)
T ss_dssp TEEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-EECS----------------------------
T ss_pred CccceEcCCCCC--CcEEEEECCCCCEEEEEcCCCeEEEEECCCCcE-EEEE----------------------------
Confidence 456667776654 899999999999999999999999999876621 1100
Q ss_pred cccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccC
Q 001184 700 LSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSG 779 (1130)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g 779 (1130)
...|...|.+++|+|+|
T Consensus 51 ---------------------------------------------------------------~~~h~~~v~~v~~~~~g 67 (299)
T d1nr0a2 51 ---------------------------------------------------------------PDVHATMITGIKTTSKG 67 (299)
T ss_dssp ---------------------------------------------------------------SCSCSSCEEEEEECTTS
T ss_pred ---------------------------------------------------------------cCCCCCcEEEEEeeccc
Confidence 02277889999999998
Q ss_pred CeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEE
Q 001184 780 IGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLF 859 (1130)
Q Consensus 780 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iw 859 (1130)
. +++++.|+.+++|+.......... . ....+...+.++++++++++++++.++.+++|
T Consensus 68 ~-~~~~~~d~~v~~~~~~~~~~~~~~-----------------~----~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~ 125 (299)
T d1nr0a2 68 D-LFTVSWDDHLKVVPAGGSGVDSSK-----------------A----VANKLSSQPLGLAVSADGDIAVAACYKHIAIY 125 (299)
T ss_dssp C-EEEEETTTEEEEECSSSSSSCTTS-----------------C----CEEECSSCEEEEEECTTSSCEEEEESSEEEEE
T ss_pred e-eecccceeeEEEeccCCccccccc-----------------c----cccccccccccccccccccccccccccccccc
Confidence 6 667778999999986542211100 0 11135677899999999999999999999999
Q ss_pred ECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEE-EEecCCCCeeEEEEccCCCeEEEEeCC
Q 001184 860 NMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKT-KLKGHQKHITGLAFSTNLNILVSSGSD 938 (1130)
Q Consensus 860 d~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~-~l~~h~~~V~~l~~s~dg~~L~s~s~D 938 (1130)
+... ..... ....+.+++|+| ++++|++|+.||.|++||+.+++... ....|...|++++|+|++++|++++.|
T Consensus 126 ~~~~--~~~~~--~~~~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 200 (299)
T d1nr0a2 126 SHGK--LTEVP--ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQS 200 (299)
T ss_dssp ETTE--EEEEE--CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred cccc--ccccc--cccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9643 22222 345688999999 89999999999999999999887654 455799999999999999999999999
Q ss_pred CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEEC
Q 001184 939 AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYS 1018 (1130)
Q Consensus 939 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s 1018 (1130)
+.|++||+.++.... .......|..+|++++|+
T Consensus 201 ~~i~~~~~~~~~~~~-----------------------------------------------~~~~~~~h~~~v~~l~~s 233 (299)
T d1nr0a2 201 RKVIPYSVANNFELA-----------------------------------------------HTNSWTFHTAKVACVSWS 233 (299)
T ss_dssp SCEEEEEGGGTTEES-----------------------------------------------CCCCCCCCSSCEEEEEEC
T ss_pred ccccccccccccccc-----------------------------------------------cccccccccccccccccc
Confidence 999999987633210 011112347899999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 001184 1019 CNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1093 (1130)
Q Consensus 1019 ~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~ 1093 (1130)
|++++|++|+.||.|++||+.++.....+... .+....+...+.++ +.+|++|+.||+|++||++
T Consensus 234 ~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~---------~~~~~~v~~~~~~~-~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 234 PDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG---------AHAMSSVNSVIWLN-ETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp TTSSEEEEEETTSCEEEEETTCTTSCCEEETT---------SSTTSCEEEEEEEE-TTEEEEEETTSCEEEEECC
T ss_pred ccccceEEEcCCCEEEEEECCCCCcceEEEec---------CCCCCcEEEEEECC-CCEEEEEeCCCEEEEEecc
Confidence 99999999999999999999987654333211 12222333333443 5789999999999999984
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=7.6e-31 Score=295.22 Aligned_cols=304 Identities=14% Similarity=0.149 Sum_probs=238.5
Q ss_pred CccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc--eeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001184 541 GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA--LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMD 618 (1130)
Q Consensus 541 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 618 (1130)
..+|++++|+|||++|++++. ++.|++||..+++ .+..+.+|.. .|.+++|+|++++|++++.|+.|++||+.
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~----~~~i~iw~~~~~~~~~~~~l~gH~~-~V~~l~fsp~~~~l~s~s~D~~i~vWd~~ 81 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPN----NHEVHIYEKSGNKWVQVHELKEHNG-QVTGVDWAPDSNRIVTCGTDRNAYVWTLK 81 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECS----SSEEEEEEEETTEEEEEEEEECCSS-CEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeC----CCEEEEEECCCCCEEEEEEecCCCC-CEEEEEECCCCCEEEEEECCCeEEEEeec
Confidence 357999999999999999875 8899999998775 5667788766 89999999999999999999999999999
Q ss_pred CCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeecccc
Q 001184 619 NVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITP 698 (1130)
Q Consensus 619 ~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 698 (1130)
++.....+....+...|.+++|+|+++.+++++.|+.+++|++........ ..
T Consensus 82 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~-~~-------------------------- 134 (371)
T d1k8kc_ 82 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV-CK-------------------------- 134 (371)
T ss_dssp TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEE-EE--------------------------
T ss_pred ccccccccccccccccccccccccccccceeecccCcceeeeeeccccccc-cc--------------------------
Confidence 888776666666666899999999999999999999999999765411000 00
Q ss_pred ccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEecc
Q 001184 699 VLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNS 778 (1130)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 778 (1130)
.. ...|...|.+++|+|+
T Consensus 135 -----------------------------------------------------------~~---~~~~~~~v~~v~~~p~ 152 (371)
T d1k8kc_ 135 -----------------------------------------------------------HI---KKPIRSTVLSLDWHPN 152 (371)
T ss_dssp -----------------------------------------------------------EE---CTTCCSCEEEEEECTT
T ss_pred -----------------------------------------------------------cc---cccccccccccccccc
Confidence 00 0236788999999999
Q ss_pred CCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCC--CCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCe
Q 001184 779 GIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPS--NGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGK 855 (1130)
Q Consensus 779 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~--~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~ 855 (1130)
+..+++++.|+.+++|+.......... ....|+.. .+..... ...|...|.+++|+|+|++|++++ |+.
T Consensus 153 ~~~l~s~s~D~~v~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~g~~l~s~~~d~~ 224 (371)
T d1k8kc_ 153 SVLLAAGSCDFKCRIFSAYIKEVEERP------APTPWGSKMPFGELMFE--SSSSCGWVHGVCFSANGSRVAWVSHDST 224 (371)
T ss_dssp SSEEEEEETTSCEEEEECCCTTTSCCC------CCBTTBSCCCTTCEEEE--CCCCSSCEEEEEECSSSSEEEEEETTTE
T ss_pred ccceeccccCcEEEEEeeccCcccccc------ccccccccccceeeeee--ccCccCcEEEEEeecccccccccccCCc
Confidence 999999999999999997654322111 11122222 2222221 236888999999999999999998 899
Q ss_pred EEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecC--eEEEE---------------------
Q 001184 856 VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD--EVKTK--------------------- 912 (1130)
Q Consensus 856 i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~--~~~~~--------------------- 912 (1130)
|++||+.+++.+..+..|..+|.+++|+| ++.+|++|. |+.+++|..... .....
T Consensus 225 i~iwd~~~~~~~~~~~~~~~~v~s~~fs~-d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (371)
T d1k8kc_ 225 VCLADADKKMAVATLASETLPLLAVTFIT-ESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQ 302 (371)
T ss_dssp EEEEEGGGTTEEEEEECSSCCEEEEEEEE-TTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHH
T ss_pred ceEEeeecccceeeeecccccceeeeecC-CCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEe
Confidence 99999999999999999999999999999 888888664 777777765432 11000
Q ss_pred ------------------EecCCCCeeEEEEccCC----CeEEEEeCCCcEEEEECCC
Q 001184 913 ------------------LKGHQKHITGLAFSTNL----NILVSSGSDAQLIFWNTDT 948 (1130)
Q Consensus 913 ------------------l~~h~~~V~~l~~s~dg----~~L~s~s~Dg~i~vwd~~~ 948 (1130)
...|.+.|+++++.+++ ..++|+|.||.|++||+++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 303 NLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp HCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence 01388899999998865 3589999999999999976
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=4e-30 Score=285.50 Aligned_cols=319 Identities=18% Similarity=0.297 Sum_probs=252.7
Q ss_pred eeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEE
Q 001184 446 QSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIK 524 (1130)
Q Consensus 446 ~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~ 524 (1130)
....++||.+.|.+ +++++|+ +|+||+.|++|+||| .+++++.++.+|.+.|.+++|++ .+|++++.|+.++
T Consensus 8 ~~~~l~GH~~~V~s-~~~~~g~--~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~----~~l~s~s~D~~~~ 80 (342)
T d2ovrb2 8 SPKVLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTLK 80 (342)
T ss_dssp CCEEEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEETTSCEE
T ss_pred cCEEECCcCCceEE-EEEECCC--EEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC----Cccccceeccccc
Confidence 34478999999865 4777888 899999999999999 89999999999999999999964 4899999999999
Q ss_pred EEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEE
Q 001184 525 AWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRIL 604 (1130)
Q Consensus 525 vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 604 (1130)
+|+................+...... ...++.+.. ++.+.+|+..+++....+..... ......+....++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----d~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 151 (342)
T d2ovrb2 81 VWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR----DATLRVWDIETGQCLHVLMGHVA---AVRCVQYDGRRVV 151 (342)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET----TSEEEEEESSSCCEEEEEECCSS---CEEEEEECSSCEE
T ss_pred ccccccccceecccccceeEeeeecc--ccccccccc----ceeEEEeecccccceeeeecccc---cceeeccccceee
Confidence 99998877777766666666555444 345555554 88999999999988877765433 2233445667899
Q ss_pred EEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhccccccccccccc
Q 001184 605 AAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTE 684 (1130)
Q Consensus 605 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1130)
+++.|+.|++||....+.+..+..+. .....+++++.++++++.||.|++||+..+. ...
T Consensus 152 ~~~~d~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~-~~~--------------- 211 (342)
T d2ovrb2 152 SGAYDFMVKVWDPETETCLHTLQGHT----NRVYSLQFDGIHVVSGSLDTSIRVWDVETGN-CIH--------------- 211 (342)
T ss_dssp EEETTSCEEEEEGGGTEEEEEECCCS----SCEEEEEECSSEEEEEETTSCEEEEETTTCC-EEE---------------
T ss_pred eecCCCeEEEeecccceeeEEEcCcc----cccccccCCCCEEEEEeCCCeEEEeecccce-eee---------------
Confidence 99999999999999998888877653 3455666678999999999999999976541 000
Q ss_pred ccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCC
Q 001184 685 MKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPEST 764 (1130)
Q Consensus 685 ~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 764 (1130)
T Consensus 212 -------------------------------------------------------------------------------- 211 (342)
T d2ovrb2 212 -------------------------------------------------------------------------------- 211 (342)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecC
Q 001184 765 DSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKN 844 (1130)
Q Consensus 765 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~d 844 (1130)
.+ .+|...+.+++++
T Consensus 212 ----------------------------~~-----------------------------------~~~~~~v~~~~~~-- 226 (342)
T d2ovrb2 212 ----------------------------TL-----------------------------------TGHQSLTSGMELK-- 226 (342)
T ss_dssp ----------------------------EE-----------------------------------CCCCSCEEEEEEE--
T ss_pred ----------------------------Ee-----------------------------------cccccceeEEecC--
Confidence 00 0345556666554
Q ss_pred CCEEEEEe-CCeEEEEECCCceeEEEEeC---CCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEe-----c
Q 001184 845 DSYVMSAG-GGKVSLFNMMNFKVMTTFMS---PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLK-----G 915 (1130)
Q Consensus 845 g~~la~~~-dg~i~iwd~~~~~~~~~~~~---~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-----~ 915 (1130)
+++|++++ ||.|++||+...+....+.. |...+.++.++ +.++++|+.||+|++||+++++++.++. +
T Consensus 227 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~ 303 (342)
T d2ovrb2 227 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGG 303 (342)
T ss_dssp TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGG
T ss_pred CCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC---CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCC
Confidence 46888887 89999999998888887765 44556666664 4699999999999999999999988874 5
Q ss_pred CCCCeeEEEEccCCCeEEEEeCCCc----EEEEECCC
Q 001184 916 HQKHITGLAFSTNLNILVSSGSDAQ----LIFWNTDT 948 (1130)
Q Consensus 916 h~~~V~~l~~s~dg~~L~s~s~Dg~----i~vwd~~~ 948 (1130)
|.+.|++++|+|++.+|++|+.||+ |++||++.
T Consensus 304 ~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 304 SGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp GTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 7888999999999999999999986 99999874
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=3.1e-30 Score=284.00 Aligned_cols=290 Identities=14% Similarity=0.236 Sum_probs=224.1
Q ss_pred CCEEEEEEecCCCeEEEEEeCc-CeEEEEeCCCCceeecccceeeeccccccceeeeeecCC-CccEEEEEEcC--CCCE
Q 001184 348 SSVVSMDFHPFHHTLLVVGCGD-GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDS-SISVSRVAWSP--DGNF 423 (1130)
Q Consensus 348 ~~V~~v~fspdg~~llasg~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~sp--dg~~ 423 (1130)
..+++++|+|+|+. |+.++.+ ..|+.||....+... ...+.+| ...|++++|+| +|++
T Consensus 18 ~~~t~l~~~~~~~~-la~~~~~~~~i~~~~~~~~~~~~-----------------~~~~~gh~~~~v~~v~fsP~~~g~~ 79 (325)
T d1pgua1 18 NFTTHLSYDPTTNA-IAYPCGKSAFVRCLDDGDSKVPP-----------------VVQFTGHGSSVVTTVKFSPIKGSQY 79 (325)
T ss_dssp TCCCCCEEETTTTE-EEEEETTEEEEEECCSSCCSSCS-----------------EEEECTTTTSCEEEEEECSSTTCCE
T ss_pred CCeEEEEECCCCCE-EEEEeCCCEEEEEEeCCCCCccc-----------------eEEEeCCCCCCEEEEEEeeCCCCCE
Confidence 35689999999996 6666543 345666654332211 0134566 56899999998 6789
Q ss_pred EEEEeCCCeEEEEEecCCccceee-----eeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCC
Q 001184 424 IGVAFTKHLIHLYTYQGSNDLCQS-----LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHE 497 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~-----~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~ 497 (1130)
||+|+.||+|+|||+..++..... ..+..|.++|.+++|+++++.+..++++.++.+++|+ .+++++..+.+|.
T Consensus 80 lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 159 (325)
T d1pgua1 80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHS 159 (325)
T ss_dssp EEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCS
T ss_pred EEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecc
Confidence 999999999999999876543321 2346789999999999999953333445688999999 8899999999999
Q ss_pred cCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeee---cCCCccEEEEEEecC-CCeEEEeeecCCCCcEEEEee
Q 001184 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY---DAPGLWCTTMLYSAD-GSRLFSCGTSKEGDSHLVEWN 573 (1130)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~i~~wd 573 (1130)
..|.+++|++..+ .++++++.|+.+++||....+..... ..+...|.+++|+|+ +.++++++. ++.|++||
T Consensus 160 ~~v~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~----d~~i~iwd 234 (325)
T d1pgua1 160 QRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS----DRKISCFD 234 (325)
T ss_dssp SCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET----TCCEEEEE
T ss_pred ccccccccccccc-ceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccccc----ccceeeee
Confidence 9999999987543 46788999999999998876655443 345668999999997 577888875 89999999
Q ss_pred CCCCceeEEEecccCceeEEEEEc---CCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCC-CCEEEE
Q 001184 574 ESEGALKRTYIGFRKKSAGVVQFD---TTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE-GNLLVV 649 (1130)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~-~~~l~~ 649 (1130)
.++++.+..+.+|.. .+..+.|+ +++++|++++.|+.|+|||+.+++++..+..+.+...+..+++.+. +.+|++
T Consensus 235 ~~~~~~~~~l~~~~~-~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 313 (325)
T d1pgua1 235 GKSGEFLKYIEDDQE-PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS 313 (325)
T ss_dssp TTTCCEEEECCBTTB-CCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEE
T ss_pred ecccccccccccccc-ccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEE
Confidence 999999999988765 44433333 6889999999999999999999999999887776544555555432 347899
Q ss_pred EeCCCcEEEEEc
Q 001184 650 TTADQGIKILAN 661 (1130)
Q Consensus 650 ~~~dg~i~iw~~ 661 (1130)
++.||.|++||+
T Consensus 314 ~s~dg~i~vwdl 325 (325)
T d1pgua1 314 LSLDGTLNFYEL 325 (325)
T ss_dssp EETTSCEEEEET
T ss_pred EECCCEEEEEEC
Confidence 999999999985
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=9.4e-29 Score=274.33 Aligned_cols=275 Identities=18% Similarity=0.283 Sum_probs=220.5
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
+|.+.|.+ +++++|+ +||||+.||+|+|||+.+++.+. .+.+|.+.|.+++|+|+ +|
T Consensus 14 GH~~~V~s-~~~~~g~-~l~sgs~Dg~i~vWd~~~~~~~~-------------------~~~~h~~~V~~v~~~~~--~l 70 (342)
T d2ovrb2 14 GHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLR-------------------TLVGHTGGVWSSQMRDN--II 70 (342)
T ss_dssp CSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEE-------------------ECCCCSSCEEEEEEETT--EE
T ss_pred CcCCceEE-EEEECCC-EEEEEeCCCeEEEEECCCCCEEE-------------------EEeCCCCCEEEEEeCCC--cc
Confidence 69999876 4778898 59999999999999999998775 47799999999999975 99
Q ss_pred EEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEE
Q 001184 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1130)
++|+.|+.+++|+........ ....+...+....+.+ . .++.+..|+.+.+|+ .+++....+..+.......
T Consensus 71 ~s~s~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~--~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~ 143 (342)
T d2ovrb2 71 ISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLHE--K--RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV 143 (342)
T ss_dssp EEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEET--T--EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEE
T ss_pred ccceeccccccccccccccee---cccccceeEeeeeccc--c--cccccccceeEEEeecccccceeeeecccccceee
Confidence 999999999999998765333 3344555566555543 3 578889999999999 7787777776655555444
Q ss_pred eecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEE
Q 001184 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1130)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1130)
.. ....+++++.|+.|++||.........+..+...+.. +.+++.++++++. ++.|++||.+.++.+..+
T Consensus 144 ~~----~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~l~s~~~----dg~i~~~d~~~~~~~~~~ 213 (342)
T d2ovrb2 144 QY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS--LQFDGIHVVSGSL----DTSIRVWDVETGNCIHTL 213 (342)
T ss_dssp EE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEE--EEECSSEEEEEET----TSCEEEEETTTCCEEEEE
T ss_pred cc----ccceeeeecCCCeEEEeecccceeeEEEcCccccccc--ccCCCCEEEEEeC----CCeEEEeecccceeeeEe
Confidence 32 2357899999999999999988888888777765544 5567889999986 899999999999999999
Q ss_pred ecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccC-CCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001184 584 IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEG-GLPSLPRLRFNKEGNLLVVTTADQGIKILANA 662 (1130)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~ 662 (1130)
.+|.. .+.+++++ ++++++++.||.|++||....+....+..+. +...+.++.+ ++.++++++.||.|++||+.
T Consensus 214 ~~~~~-~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~ 288 (342)
T d2ovrb2 214 TGHQS-LTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLK 288 (342)
T ss_dssp CCCCS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETT
T ss_pred ccccc-ceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECC
Confidence 88765 67766665 5799999999999999999998887776543 3334455555 56799999999999999998
Q ss_pred CC
Q 001184 663 DG 664 (1130)
Q Consensus 663 ~~ 664 (1130)
++
T Consensus 289 tg 290 (342)
T d2ovrb2 289 TG 290 (342)
T ss_dssp TC
T ss_pred CC
Confidence 77
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=6.9e-29 Score=273.13 Aligned_cols=290 Identities=14% Similarity=0.167 Sum_probs=218.2
Q ss_pred CccceEEEEEeccCCeEEEeeeCC-eEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEec-
Q 001184 766 SASKVARLLYTNSGIGILALWSNG-VQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSK- 843 (1130)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~- 843 (1130)
....+.+++|+|+|+.++.++.+. .++.|+....... .. ..+.+.+...|++++|+|
T Consensus 16 ~~~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~--------------------~~-~~~~gh~~~~v~~v~fsP~ 74 (325)
T d1pgua1 16 QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVP--------------------PV-VQFTGHGSSVVTTVKFSPI 74 (325)
T ss_dssp CTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSC--------------------SE-EEECTTTTSCEEEEEECSS
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCcc--------------------ce-EEEeCCCCCCEEEEEEeeC
Confidence 344677899999999998876543 3445543221110 00 012223467899999997
Q ss_pred -CCCEEEEEe-CCeEEEEECCCcee--------EEEEeCCCCCeEEEEEeCCCCcEEEEEeC--CCcEEEEEeecCeEEE
Q 001184 844 -NDSYVMSAG-GGKVSLFNMMNFKV--------MTTFMSPPPASTFLAFHPQDNNIIAIGME--DSTIQIYNVRVDEVKT 911 (1130)
Q Consensus 844 -dg~~la~~~-dg~i~iwd~~~~~~--------~~~~~~~~~~i~~l~~sp~~~~~lasg~~--dg~v~iwd~~~~~~~~ 911 (1130)
+|++|++|+ ||+|+|||+..++. ...+..|.++|.+++|++ +++++++++. ++.+++|+.++++.+.
T Consensus 75 ~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (325)
T d1pgua1 75 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSLG 153 (325)
T ss_dssp TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEEE
T ss_pred CCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeecccccce
Confidence 678999998 89999999865432 233556888999999999 7887776654 6789999999999999
Q ss_pred EEecCCCCeeEEEEccCCCe-EEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCC-CcEEEE-EcCCcE
Q 001184 912 KLKGHQKHITGLAFSTNLNI-LVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSD-QVRLLV-NHETQL 988 (1130)
Q Consensus 912 ~l~~h~~~V~~l~~s~dg~~-L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~~-~~d~~i 988 (1130)
.+.+|...|++++|+|++.+ +++++.|+.+++||+...+..... .....+...+.+++|+|+ +.++++ +.|+.|
T Consensus 154 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~---~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i 230 (325)
T d1pgua1 154 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD---RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKI 230 (325)
T ss_dssp ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE---CSSSCTTCCEEEEEECSTTCCEEEEEETTCCE
T ss_pred eeeecccccccccccccccceEEEeecccccccccccccccceec---ccccCCCCccEEeeeccccceeccccccccce
Confidence 99999999999999999875 678999999999999875432221 112233467999999997 567776 679999
Q ss_pred EEEECCCceeeeeeecCCCCCCCeEEEEEC---CCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeee
Q 001184 989 AIYDGSKMECIRQWVPQDVLSSPISSAAYS---CNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFP 1065 (1130)
Q Consensus 989 ~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s---~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1130)
++||+.+++.+..+..| ..++.++.|+ |||++|++++.|+.|+|||+.+++.+..+..+. +......
T Consensus 231 ~iwd~~~~~~~~~l~~~---~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~-------~~~~~~~ 300 (325)
T d1pgua1 231 SCFDGKSGEFLKYIEDD---QEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDK-------QQLGNQQ 300 (325)
T ss_dssp EEEETTTCCEEEECCBT---TBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCT-------TCGGGCE
T ss_pred eeeeecccccccccccc---ccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecC-------CcccCeE
Confidence 99999999999988776 4555544444 689999999999999999999999887765433 2222344
Q ss_pred EEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 001184 1066 LVVTSHPQEPNQLAVGLTDGSVKVIEP 1092 (1130)
Q Consensus 1066 ~~~~~~~~~~~~l~s~~~Dg~v~vW~~ 1092 (1130)
+.+.|.+ +.+|++++.||+|++||+
T Consensus 301 ~~~~~~~--~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 301 VGVVATG--NGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred EEEEECC--CCEEEEEECCCEEEEEEC
Confidence 5555554 458999999999999996
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.5e-25 Score=241.91 Aligned_cols=268 Identities=22% Similarity=0.299 Sum_probs=215.4
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
+|...|+|++ +||+ +||+|+.||+|+|||+.+++.+. ++.+|.+.|++++| ++++|
T Consensus 13 ~~~~~V~c~~--~d~~-~l~sgs~Dg~i~vWd~~~~~~~~-------------------~l~~H~~~V~~v~~--~~~~l 68 (293)
T d1p22a2 13 ETSKGVYCLQ--YDDQ-KIVSGLRDNTIKIWDKNTLECKR-------------------ILTGHTGSVLCLQY--DERVI 68 (293)
T ss_dssp SSCCCEEEEE--CCSS-EEEEEESSSCEEEEESSSCCEEE-------------------EECCCSSCEEEEEC--CSSEE
T ss_pred CCCCCEEEEE--EcCC-EEEEEeCCCeEEEEECCCCcEEE-------------------EEecCCCCEeeeec--cccee
Confidence 4888999865 5787 59999999999999999998776 57899999999887 67899
Q ss_pred EEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCC---eeeEecCCCcCE
Q 001184 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGR---KLFQFEGHEAPV 500 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~---~~~~~~~h~~~v 500 (1130)
++|+.|+.|++|++..+.... ....+. .....+.+... .++++..++.+++|| .... ....+..|...+
T Consensus 69 ~s~s~D~~i~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 141 (293)
T d1p22a2 69 ITGSSDSTVRVWDVNTGEMLN---TLIHHC--EAVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 141 (293)
T ss_dssp EEEETTSCEEEEESSSCCEEE---EECCCC--SCEEEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred ecccccccccccccccccccc---cccccc--ccccccccccc--ceeecccccceeEeecccccccccccccccccccc
Confidence 999999999999999886543 222222 23344555555 689999999999999 4433 345567888999
Q ss_pred EEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCcee
Q 001184 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK 580 (1130)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1130)
..+.+.. ..+++++.|+.|++||+++.+....+..+...+..+.++ +.++++++. ++.|++||+++...+
T Consensus 142 ~~~~~~~----~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~----dg~i~i~d~~~~~~~ 211 (293)
T d1p22a2 142 NVVDFDD----KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSS----DNTIRLWDIECGACL 211 (293)
T ss_dssp EEEEEET----TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEET----TSCEEEEETTTCCEE
T ss_pred ccceecc----cccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecC----CCEEEEEecccceee
Confidence 8887643 578899999999999999999888888888888777665 568888876 899999999999999
Q ss_pred EEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCC---------CceeEEEeccCCCCCcceEEEcCCCCEEEEEe
Q 001184 581 RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN---------VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT 651 (1130)
Q Consensus 581 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~---------~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~ 651 (1130)
..+.++.. .+. .+++++.+|++|+.||.|++||+.. ...+..+..|. ..|.+++|+ +.+|++++
T Consensus 212 ~~~~~~~~-~v~--~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~--~~V~~v~~d--~~~l~s~s 284 (293)
T d1p22a2 212 RVLEGHEE-LVR--CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS--GRVFRLQFD--EFQIVSSS 284 (293)
T ss_dssp EEECCCSS-CEE--EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS--SCCCCEEEC--SSCEEECC
T ss_pred eeecccce-eee--eccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCC--CCEEEEEEc--CCEEEEEe
Confidence 98887655 444 4567889999999999999999643 34556666554 479999995 56899999
Q ss_pred CCCcEEEEE
Q 001184 652 ADQGIKILA 660 (1130)
Q Consensus 652 ~dg~i~iw~ 660 (1130)
.||+|++||
T Consensus 285 ~Dg~i~iWD 293 (293)
T d1p22a2 285 HDDTILIWD 293 (293)
T ss_dssp SSSEEEEEC
T ss_pred cCCEEEEeC
Confidence 999999997
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.95 E-value=2.5e-26 Score=261.85 Aligned_cols=367 Identities=11% Similarity=0.035 Sum_probs=264.2
Q ss_pred eEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecC
Q 001184 361 TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQG 440 (1130)
Q Consensus 361 ~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~ 440 (1130)
.++++.+.||+|.|||..+++++.. +..| ..+..++|||||++|++++.|++|++||+.+
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~v~~~-------------------~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t 92 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYEIKTV-------------------LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWM 92 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEE-------------------EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeC
Confidence 3568899999999999999998873 4444 3699999999999999999999999999988
Q ss_pred Cccce--eeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEE
Q 001184 441 SNDLC--QSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFST 517 (1130)
Q Consensus 441 ~~~~~--~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 517 (1130)
++... ......+|.+.+.+.+|+|||++ ++++++.+++|++|| .+++.+..+..|...+....+.+.+
T Consensus 93 ~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~-l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~-------- 163 (432)
T d1qksa2 93 KEPTTVAEIKIGSEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEP-------- 163 (432)
T ss_dssp SSCCEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCC--------
T ss_pred CCceEEEEEecCCCCCCeEEecccCCCCCE-EEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCC--------
Confidence 76432 22233467777888889999995 468899999999999 8999999888776655444443222
Q ss_pred ecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEc
Q 001184 518 AVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFD 597 (1130)
Q Consensus 518 s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~ 597 (1130)
....+.++|+|..+++... .++.|.+||..+++.........+.....++|+
T Consensus 164 -------------------------~~~~v~~s~dg~~~~vs~~---~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~s 215 (432)
T d1qksa2 164 -------------------------RVAAILASHYRPEFIVNVK---ETGKILLVDYTDLNNLKTTEISAERFLHDGGLD 215 (432)
T ss_dssp -------------------------CEEEEEECSSSSEEEEEET---TTTEEEEEETTCSSEEEEEEEECCSSEEEEEEC
T ss_pred -------------------------ceeEEEECCCCCEEEEEEc---cCCeEEEEEccCCCcceEEEEcccCccccceEC
Confidence 2445778999988776653 378999999988876655443444467889999
Q ss_pred CCCCEEEEEeC-CCcEEEEeCCCCceeEEEeccC---CCCCcceEEEcCCCCEEEEEe-CCCcEEEEEcCCCchhhhhhc
Q 001184 598 TTRNRILAAGE-DNQIKFWDMDNVNMLTSTEAEG---GLPSLPRLRFNKEGNLLVVTT-ADQGIKILANADGLRALRAIE 672 (1130)
Q Consensus 598 ~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~---~~~~i~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~ 672 (1130)
|+|+++++++. ++.+.++|..+++.+..+.... +........+...+...++.. .++.+.+|+..... .
T Consensus 216 pdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~-----~- 289 (432)
T d1qksa2 216 GSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG-----H- 289 (432)
T ss_dssp TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT-----C-
T ss_pred CCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccc-----c-
Confidence 99998887764 5689999999998887765432 211223334443444443332 26677777643220 0
Q ss_pred ccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCC
Q 001184 673 TRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDP 752 (1130)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~ 752 (1130)
T Consensus 290 -------------------------------------------------------------------------------- 289 (432)
T d1qksa2 290 -------------------------------------------------------------------------------- 289 (432)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCC
Q 001184 753 LQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENA 832 (1130)
Q Consensus 753 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 832 (1130)
..+...+....+++++..+++++.+...++|...... .+
T Consensus 290 -----------~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~------------------------------~~ 328 (432)
T d1qksa2 290 -----------PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN------------------------------PE 328 (432)
T ss_dssp -----------TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC------------------------------SS
T ss_pred -----------cccccEEEEEEEcCCCCeEEEEecCCccceeecccCC------------------------------CC
Confidence 1144566778888888888888888888888643210 12
Q ss_pred CCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEe-----CCCcEEEEEeec
Q 001184 833 EDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGM-----EDSTIQIYNVRV 906 (1130)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~-----~dg~v~iwd~~~ 906 (1130)
......+++ ||++.+++++ |+.+++|++.++..+ ..|...+.+++|+| ||+.|+++. .+|.|.|||..+
T Consensus 329 ~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l---~~~~~~v~~~~fS~-DG~~v~~S~~~~~~~~g~i~i~D~~T 403 (432)
T d1qksa2 329 AEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGI---TEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESALVVVDDKT 403 (432)
T ss_dssp HHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHTC---CSSCCEEEEEEECT-TSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred CCeeeEEEE-EechhhcccccCCceEeccccccccc---CCCCCcEEEeEECC-CCCEEEEEEecCCCCCCcEEEEECCC
Confidence 233344555 8999999998 899999998665332 35667899999999 777665443 468899999999
Q ss_pred CeEEEEEecC
Q 001184 907 DEVKTKLKGH 916 (1130)
Q Consensus 907 ~~~~~~l~~h 916 (1130)
.++...+++.
T Consensus 404 ~k~~~~i~~~ 413 (432)
T d1qksa2 404 LELKHVIKDE 413 (432)
T ss_dssp TEEEEEECCT
T ss_pred ceEEeEecCC
Confidence 9998888764
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=4.6e-26 Score=245.90 Aligned_cols=268 Identities=12% Similarity=0.155 Sum_probs=207.4
Q ss_pred ceeeec-cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEE
Q 001184 339 AVACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1130)
Q Consensus 339 ~~~~~~-~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 417 (1130)
+.++++ +|...|++++|+| |++|+.||+|++||+.++ ..+|...|.+++|
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~------------------------~~~h~~~V~~~~~ 54 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSM------------------------HQDHSNLIVSLDN 54 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEE------------------------ECCCCSCEEEEEC
T ss_pred ceeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCC------------------------CCCCCCCEEEEEe
Confidence 455666 4999999999987 799999999999998753 3478999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCC
Q 001184 418 SPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGH 496 (1130)
Q Consensus 418 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h 496 (1130)
++++ .+++++.|++|++|++...+ ....+..+++++++. .+++++ ++.+.+|+ .+++.+..+..
T Consensus 55 ~~~~-~~~s~s~D~~v~~w~~~~~~----------~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~- 119 (287)
T d1pgua2 55 SKAQ-EYSSISWDDTLKVNGITKHE----------FGSQPKVASANNDGF--TAVLTN-DDDLLILQSFTGDIIKSVRL- 119 (287)
T ss_dssp CSTT-CCEEEETTTEEEETTEEEEE----------CSSCEEEEEECSSSE--EEEEET-TSEEEEEETTTCCEEEEEEC-
T ss_pred cCCC-eEEEEeeccccccccccccc----------cccceeeeeeccCCc--eEEEee-cccceeeeccceeeeeeccc-
Confidence 9765 57889999999999986522 233477889998887 555554 55678888 88888887764
Q ss_pred CcCEEEEeecccCCccEEEEEecC-CcEEEEEccCCcceeeec-CCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeC
Q 001184 497 EAPVYSVCPHQKENIHFIFSTAVD-GKIKAWLYDNVGSRVDYD-APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE 574 (1130)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1130)
...+.++. +. +..+++++.+ +.+++|++........+. .+...+.+++|+|++.+|++++. ++.|++||.
T Consensus 120 ~~~~~~~~--~~--~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~----dg~i~i~d~ 191 (287)
T d1pgua2 120 NSPGSAVS--LS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV----MGKILLYDL 191 (287)
T ss_dssp SSCEEEEE--EC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET----TSCEEEEET
T ss_pred cceeeeee--cc--CcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccc----cccccceee
Confidence 34455543 33 3566666665 579999987666555443 35668999999999999999986 899999999
Q ss_pred CCCceeEEEecccCceeEEEEEcCC----------CCEEEEEeCCCcEEEEeCCC-CceeEEEeccCCCCCcceEEEcCC
Q 001184 575 SEGALKRTYIGFRKKSAGVVQFDTT----------RNRILAAGEDNQIKFWDMDN-VNMLTSTEAEGGLPSLPRLRFNKE 643 (1130)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~i~~v~~s~~ 643 (1130)
.+++........+...+.+++|+|. +.++++|+.|+.|++||+.+ ++.+..+..| ...|++++|+|+
T Consensus 192 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h--~~~V~~v~~~~~ 269 (287)
T d1pgua2 192 QSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH--KDGVNNLLWETP 269 (287)
T ss_dssp TTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS--TTCEEEEEEEET
T ss_pred cccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCC--CCCeEEEEECCC
Confidence 9888765433334447999999875 46899999999999999977 4455555444 448999999998
Q ss_pred CCEEEEEeCCCcEEEEEc
Q 001184 644 GNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~ 661 (1130)
+ .+++++.|+.|++|++
T Consensus 270 ~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 270 S-TLVSSGADACIKRWNV 286 (287)
T ss_dssp T-EEEEEETTSCEEEEEE
T ss_pred C-EEEEEECCCeEEEEEE
Confidence 6 5889999999999985
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.6e-26 Score=254.06 Aligned_cols=291 Identities=11% Similarity=0.071 Sum_probs=208.5
Q ss_pred eeec-cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC
Q 001184 341 ACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1130)
Q Consensus 341 ~~~~-~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 419 (1130)
+... .|.+.|++|+|||+|+ +||+|+.||+|+|||+.++..... .....+|.+.|.+++|+|
T Consensus 4 v~~~~~h~d~I~~l~fsp~~~-~L~s~s~Dg~v~iwd~~~~~~~~~----------------~~~~~~h~~~V~~v~f~~ 66 (342)
T d1yfqa_ 4 VQIEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVD----------------LLQSLRYKHPLLCCNFID 66 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEE----------------EEEEEECSSCEEEEEEEE
T ss_pred EEcCCCCCCCEEEEEEeCCCC-EEEEEECCCeEEEEEccCCCcceE----------------EEEecCCCCCEEEEEEeC
Confidence 3444 4999999999999998 599999999999999987654321 012347999999999998
Q ss_pred C-CCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCee----eEe
Q 001184 420 D-GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKL----FQF 493 (1130)
Q Consensus 420 d-g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~----~~~ 493 (1130)
+ +.+|++|+.|+.|++|++..+...... ...+........+.+++. .+++++.|+++++|| ..+... ...
T Consensus 67 ~~~~~l~sg~~d~~v~~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~wd~~~~~~~~~~~~~~ 142 (342)
T d1yfqa_ 67 NTDLQIYVGTVQGEILKVDLIGSPSFQAL--TNNEANLGICRICKYGDD--KLIAASWDGLIEVIDPRNYGDGVIAVKNL 142 (342)
T ss_dssp SSSEEEEEEETTSCEEEECSSSSSSEEEC--BSCCCCSCEEEEEEETTT--EEEEEETTSEEEEECHHHHTTBCEEEEES
T ss_pred CCCCEEEEcccccceeeeecccccccccc--cccccccccccccccccc--cccccccccccceeeccccccceeeeccc
Confidence 6 458999999999999999887654421 222333445555666666 799999999999999 433322 222
Q ss_pred cCCCc--CEEEEeecccCCccEEEEEecCCcEEEEEccCCccee---eecCCCccEEEEEEe-cCCCeEEEeeecCCCCc
Q 001184 494 EGHEA--PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV---DYDAPGLWCTTMLYS-ADGSRLFSCGTSKEGDS 567 (1130)
Q Consensus 494 ~~h~~--~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~---~~~~~~~~v~~~~~s-~~~~~l~~~~~~~~~~~ 567 (1130)
..+.. ....+.+. .++..+++++.|+.|++||+....... ........+.+..+. .++..+++++. ++
T Consensus 143 ~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----dg 216 (342)
T d1yfqa_ 143 NSNNTKVKNKIFTMD--TNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI----DG 216 (342)
T ss_dssp CSSSSSSCCCEEEEE--ECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET----TS
T ss_pred ccccccceeeeeeee--ccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecC----CC
Confidence 22322 22233333 344689999999999999998765443 222333345555554 46677777775 88
Q ss_pred EEEEeeCCCCcee------EEEe--------cccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCC
Q 001184 568 HLVEWNESEGALK------RTYI--------GFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLP 633 (1130)
Q Consensus 568 ~i~~wd~~~~~~~------~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 633 (1130)
.+.+|+....... ..+. ..+...+.+++|+|++++|++|+.||.|++||+.+++.+..+....
T Consensus 217 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~--- 293 (342)
T d1yfqa_ 217 RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN--- 293 (342)
T ss_dssp EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS---
T ss_pred eEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC---
Confidence 9999987543211 1111 1122357899999999999999999999999999999888775432
Q ss_pred CcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 634 SLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 634 ~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
....++|+|+++++++++.|+.+++|..
T Consensus 294 ~~~~~~~s~~~~~l~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 294 EDSVVKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp SSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred CCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence 4567889999999999999988877754
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=5e-26 Score=245.56 Aligned_cols=279 Identities=12% Similarity=0.111 Sum_probs=214.3
Q ss_pred eeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEE
Q 001184 446 QSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKA 525 (1130)
Q Consensus 446 ~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~v 525 (1130)
...++.||.++|++++|+| |+||+.||+|++||... ...+|...|.++++.+. ..+++++.|+++++
T Consensus 5 ~i~~l~gH~~~I~~l~~s~------l~sgs~Dg~v~~Wd~~~----~~~~h~~~V~~~~~~~~---~~~~s~s~D~~v~~ 71 (287)
T d1pgua2 5 VLKTISGHNKGITALTVNP------LISGSYDGRIMEWSSSS----MHQDHSNLIVSLDNSKA---QEYSSISWDDTLKV 71 (287)
T ss_dssp EEEEECCCSSCEEEEETTT------TEEEETTSCEEETTTTE----EECCCCSCEEEEECCST---TCCEEEETTTEEEE
T ss_pred eeEEECCCCCceEEEEECc------EEEEeCCCeEEEEECCC----CCCCCCCCEEEEEecCC---CeEEEEeecccccc
Confidence 3447899999999999975 79999999999999332 23589999999998542 46899999999999
Q ss_pred EEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEE
Q 001184 526 WLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILA 605 (1130)
Q Consensus 526 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 605 (1130)
|++.... ....+..+.+.+++..++++. +..+.+|+..+++.+..+.... ...+++++++.+++
T Consensus 72 w~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v 135 (287)
T d1pgua2 72 NGITKHE-------FGSQPKVASANNDGFTAVLTN-----DDDLLILQSFTGDIIKSVRLNS----PGSAVSLSQNYVAV 135 (287)
T ss_dssp TTEEEEE-------CSSCEEEEEECSSSEEEEEET-----TSEEEEEETTTCCEEEEEECSS----CEEEEEECSSEEEE
T ss_pred ccccccc-------cccceeeeeeccCCceEEEee-----cccceeeeccceeeeeeccccc----eeeeeeccCcceee
Confidence 9876421 233467888999998888775 6678999999998888876532 23456778888888
Q ss_pred EeCCC-cEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhccccccccccccc
Q 001184 606 AGEDN-QIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTE 684 (1130)
Q Consensus 606 ~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1130)
++.++ .+++|++...+....+... +...+.+++|+|++.+|++++.||.|++||+.++......
T Consensus 136 ~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~-------------- 200 (287)
T d1pgua2 136 GLEEGNTIQVFKLSDLEVSFDLKTP-LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR-------------- 200 (287)
T ss_dssp EETTTSCEEEEETTEEEEEEECSSC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC--------------
T ss_pred eccccceeeeeeccccceeeeeeec-cCCceeEEEeccCccccccccccccccceeeccccccccc--------------
Confidence 88765 7999999876655554432 3347999999999999999999999999998765210000
Q ss_pred ccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCC
Q 001184 685 MKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPEST 764 (1130)
Q Consensus 685 ~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 764 (1130)
..
T Consensus 201 ------------------------------------------------------------------------------~~ 202 (287)
T d1pgua2 201 ------------------------------------------------------------------------------WA 202 (287)
T ss_dssp ------------------------------------------------------------------------------SC
T ss_pred ------------------------------------------------------------------------------cc
Confidence 02
Q ss_pred CCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecC
Q 001184 765 DSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKN 844 (1130)
Q Consensus 765 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~d 844 (1130)
.|...|.+++|+|.+... ..+.++
T Consensus 203 ~h~~~v~~~~~~p~~~~~--------------------------------------------------------~~~~~~ 226 (287)
T d1pgua2 203 FRTSKINAISWKPAEKGA--------------------------------------------------------NEEEIE 226 (287)
T ss_dssp CCSSCEEEEEECCCC--------------------------------------------------------------CCS
T ss_pred ccccccceeeeccccccc--------------------------------------------------------ccccCC
Confidence 266778888888765411 233457
Q ss_pred CCEEEEEe-CCeEEEEECCC-ceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEe
Q 001184 845 DSYVMSAG-GGKVSLFNMMN-FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNV 904 (1130)
Q Consensus 845 g~~la~~~-dg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~ 904 (1130)
+.++++|+ |++|++||+.+ .+.+..+.+|...|++++|+| ++ .|++++.||.|++|++
T Consensus 227 ~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~-~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 227 EDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp CCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE-TT-EEEEEETTSCEEEEEE
T ss_pred CCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECC-CC-EEEEEECCCeEEEEEE
Confidence 78999998 89999999876 567777889999999999999 65 4788999999999996
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.94 E-value=7.2e-26 Score=259.10 Aligned_cols=362 Identities=9% Similarity=-0.007 Sum_probs=243.5
Q ss_pred EecCCC-eEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCeE
Q 001184 355 FHPFHH-TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLI 433 (1130)
Q Consensus 355 fspdg~-~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i 433 (1130)
+++|.+ .++++.+.||+|+|||+.+++.+. .+..| ..+..++|||||++|++++.|++|
T Consensus 26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~-------------------~l~~g-~~~~~vafSPDGk~l~~~~~d~~v 85 (426)
T d1hzua2 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVK-------------------VIDTG-YAVHISRMSASGRYLLVIGRDARI 85 (426)
T ss_dssp SCCCGGGEEEEEETTTTEEEEEETTTCSEEE-------------------EEECC-SSEEEEEECTTSCEEEEEETTSEE
T ss_pred ccCCCCeEEEEEEcCCCEEEEEECCCCcEEE-------------------EEeCC-CCeeEEEECCCCCEEEEEeCCCCE
Confidence 445544 345778889999999999999886 34455 359999999999999999999999
Q ss_pred EEEEecCCccce--eeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCC
Q 001184 434 HLYTYQGSNDLC--QSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKEN 510 (1130)
Q Consensus 434 ~vwd~~~~~~~~--~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~ 510 (1130)
++||+.+++... ......+|.+.+.+++|+|||++ +++++..++.+++|| .++.++..+.+|...+....+.+.+.
T Consensus 86 ~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~-l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (426)
T d1hzua2 86 DMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR 164 (426)
T ss_dssp EEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC
T ss_pred EEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCE-EEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCc
Confidence 999999987532 12223467777888999999995 456777899999999 88888888888887776666644332
Q ss_pred ccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCce
Q 001184 511 IHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKS 590 (1130)
Q Consensus 511 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~ 590 (1130)
... +.+++++..++.... +.+.+.+++...+.............
T Consensus 165 -~~~--------------------------------i~~s~d~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~ 208 (426)
T d1hzua2 165 -VAA--------------------------------IIASHEHPEFIVNVK---ETGKVLLVNYKDIDNLTVTSIGAAPF 208 (426)
T ss_dssp -EEE--------------------------------EEECSSSSEEEEEET---TTTEEEEEECSSSSSCEEEEEECCSS
T ss_pred -eeE--------------------------------EEECCCCCEEEEecC---CCCeEEEEEeccccceeeEEeccCCc
Confidence 122 333444444443322 14455555555544332222123336
Q ss_pred eEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCC-EEE--EEeCCCcEEEEEcCCCch
Q 001184 591 AGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGN-LLV--VTTADQGIKILANADGLR 666 (1130)
Q Consensus 591 v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~-~l~--~~~~dg~i~iw~~~~~~~ 666 (1130)
+..+.++|++++++++. .+..+.+++..+++.+................+...+. .+. ..+.|+.+.+|+.....
T Consensus 209 ~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~- 287 (426)
T d1hzua2 209 LADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKN- 287 (426)
T ss_dssp EEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTT-
T ss_pred cEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccc-
Confidence 77899999999888866 56679999999999988877654433344444433322 111 22345566665543220
Q ss_pred hhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceee
Q 001184 667 ALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWEL 746 (1130)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~ 746 (1130)
+..|.
T Consensus 288 --------------------------------------------------------------------------~~~~~- 292 (426)
T d1hzua2 288 --------------------------------------------------------------------------HPQYA- 292 (426)
T ss_dssp --------------------------------------------------------------------------CTTTB-
T ss_pred --------------------------------------------------------------------------ccccc-
Confidence 00000
Q ss_pred ccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceec
Q 001184 747 TEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTN 826 (1130)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 826 (1130)
++...
T Consensus 293 --------------------------------------------------------------------------~~~~~- 297 (426)
T d1hzua2 293 --------------------------------------------------------------------------WKKVA- 297 (426)
T ss_dssp --------------------------------------------------------------------------TSEEE-
T ss_pred --------------------------------------------------------------------------ceEeE-
Confidence 00000
Q ss_pred cCCCCCCCceeEEEEecCCCEEEEE-------e-CCeEEEEECCCceeEEEEe---------CCCCCeEEEEEeCCCCcE
Q 001184 827 DVPENAEDVVPCVALSKNDSYVMSA-------G-GGKVSLFNMMNFKVMTTFM---------SPPPASTFLAFHPQDNNI 889 (1130)
Q Consensus 827 ~~~~~~~~~i~~l~~s~dg~~la~~-------~-dg~i~iwd~~~~~~~~~~~---------~~~~~i~~l~~sp~~~~~ 889 (1130)
...+|...+..++|+||+++|++. . +++|+|||+.+++...++. .+...+.+++||| ||+.
T Consensus 298 -~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp-DGk~ 375 (426)
T d1hzua2 298 -ELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDE 375 (426)
T ss_dssp -EEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECS-SSSE
T ss_pred -EEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECC-CCCE
Confidence 001467778888899999888852 3 6889999999988765542 4566799999999 7765
Q ss_pred E-EEE----eCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeE
Q 001184 890 I-AIG----MEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNIL 932 (1130)
Q Consensus 890 l-asg----~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L 932 (1130)
+ +++ +.+|.|+|||.++++....++++. .++|+|++-
T Consensus 376 i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~ 417 (426)
T d1hzua2 376 VWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFN 417 (426)
T ss_dssp EEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEE
T ss_pred EEEEEecCCCCCCeEEEEECCCCeEEEEECCCC------ccCCCceEe
Confidence 5 432 367889999999999999998775 346777663
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.9e-25 Score=247.03 Aligned_cols=254 Identities=11% Similarity=0.014 Sum_probs=189.0
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
+..+|+..|++|+|+||+++||+|+.||+|+|||+.++..........+|.++|.+++|+|++.. +|++|+.|+.|++|
T Consensus 6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~-~l~sg~~d~~v~~w 84 (342)
T d1yfqa_ 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCC-EEEEcccccceeee
Confidence 57899999999999999999999999999999999887655444445579999999999998664 79999999999999
Q ss_pred e-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeee----cC--CCccEEEEEEecCCCeE
Q 001184 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY----DA--PGLWCTTMLYSADGSRL 556 (1130)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~----~~--~~~~v~~~~~s~~~~~l 556 (1130)
+ ..+........+........+.. .+...+++++.|+++++||++........ .. .......+.+.+++..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (342)
T d1yfqa_ 85 DLIGSPSFQALTNNEANLGICRICK-YGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRL 163 (342)
T ss_dssp CSSSSSSEEECBSCCCCSCEEEEEE-ETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEE
T ss_pred ecccccccccccccccccccccccc-cccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCce
Confidence 9 66666666655554444333322 34468999999999999998754433221 11 12244567788889999
Q ss_pred EEeeecCCCCcEEEEeeCCCCceeEEE---ecccCceeEE-EEEcCCCCEEEEEeCCCcEEEEeCCCCcee------EEE
Q 001184 557 FSCGTSKEGDSHLVEWNESEGALKRTY---IGFRKKSAGV-VQFDTTRNRILAAGEDNQIKFWDMDNVNML------TST 626 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~---~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~------~~~ 626 (1130)
++++. ++.|++||+......... ..... ...+ ..+..++..+++++.||.+.+|+....... ...
T Consensus 164 ~~~~~----d~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~ 238 (342)
T d1yfqa_ 164 IVGMN----NSQVQWFRLPLCEDDNGTIEESGLKY-QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238 (342)
T ss_dssp EEEES----TTEEEEEESSCCTTCCCEEEECSCSS-CEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred eeecC----CCcEEEEecccCcccceeeeeccccc-ceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecccccee
Confidence 99886 899999999876543322 22222 3334 444556779999999999999997653211 111
Q ss_pred e-------ccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 627 E-------AEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 627 ~-------~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
. ...+...+++++|+|++++|++|+.||.|++||+.++
T Consensus 239 ~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~ 283 (342)
T d1yfqa_ 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred eeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCC
Confidence 1 1233446789999999999999999999999999776
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.3e-24 Score=245.88 Aligned_cols=267 Identities=11% Similarity=0.102 Sum_probs=198.6
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccc---eeeeeeecCCCCeeEEEEe---c-CC-CceEEEEEc
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDL---CQSLEIDAHVGGVNDLAFS---Y-PN-KQLCIVTCG 475 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~---~~~~~~~~h~~~V~~i~~s---~-d~-~~l~l~s~s 475 (1130)
+.++|.+.|.++++++ ++|++++.|++|+|||..+.+.. ........|...+..+... + ++ ...++++++
T Consensus 9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 86 (393)
T d1sq9a_ 9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS 86 (393)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence 5789999999999875 69999999999999998765431 1122233455544433322 1 11 112688999
Q ss_pred CCCcEEEEe-cCCCeeeEe----------cCCCcCEEEEeecccCC---ccEEEEEecCCcEEEEEccCCcce-------
Q 001184 476 DDKLIRVWD-LSGRKLFQF----------EGHEAPVYSVCPHQKEN---IHFIFSTAVDGKIKAWLYDNVGSR------- 534 (1130)
Q Consensus 476 ~d~~v~iwd-~~~~~~~~~----------~~h~~~v~~~~~~~~~~---~~~l~s~s~dg~i~vwd~~~~~~~------- 534 (1130)
.||.|++|+ ..+.....+ ..+...+..+++.+..+ +.++++++.||.+++|++......
T Consensus 87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~ 166 (393)
T d1sq9a_ 87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN 166 (393)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeee
Confidence 999999999 333221111 13455677777765533 578999999999999998542211
Q ss_pred -----------eeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEe------cccCceeEEEEEc
Q 001184 535 -----------VDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYI------GFRKKSAGVVQFD 597 (1130)
Q Consensus 535 -----------~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~------~~~~~~v~~~~~~ 597 (1130)
.....+...+.+++|+|++ +|++++. |+.|++||+.+++.+..+. +|. ..|.+++|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~----Dg~i~iwd~~~~~~~~~~~~~~~l~~h~-~~V~~l~~s 240 (393)
T d1sq9a_ 167 WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN----NGTVQISELSTLRPLYNFESQHSMINNS-NSIRSVKFS 240 (393)
T ss_dssp CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT----TSEEEEEETTTTEEEEEEECCC---CCC-CCEEEEEEC
T ss_pred eccceecccceecccCCCCcEEEEEECCCC-EEEEEeC----CCcEEEEeeccccccccccccccccccc-ceEEEcccc
Confidence 1122334468899999998 7888875 8999999999998876654 333 489999999
Q ss_pred CCCCEEEEEeCCCc---EEEEeCCCCceeEEEecc-----------CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001184 598 TTRNRILAAGEDNQ---IKFWDMDNVNMLTSTEAE-----------GGLPSLPRLRFNKEGNLLVVTTADQGIKILANAD 663 (1130)
Q Consensus 598 ~~~~~l~~~~~dg~---i~vwd~~~~~~~~~~~~~-----------~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 663 (1130)
|++++|++|+.|++ |++||+.+++.+..+... +|...|++++|+|++++|++++.|++|++||+.+
T Consensus 241 pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~ 320 (393)
T d1sq9a_ 241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 320 (393)
T ss_dssp SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred cccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCC
Confidence 99999999999874 999999999988877532 4555899999999999999999999999999999
Q ss_pred Cchhhhhhcccccccc
Q 001184 664 GLRALRAIETRAYETS 679 (1130)
Q Consensus 664 ~~~~~~~~~~~~~~~~ 679 (1130)
+ +.+..+.+|...+.
T Consensus 321 g-~~~~~l~gH~~~v~ 335 (393)
T d1sq9a_ 321 K-ERITTLNMHCDDIE 335 (393)
T ss_dssp T-EEEEEEECCGGGCS
T ss_pred C-CEEEEECCcCCccc
Confidence 8 67778888877654
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.8e-24 Score=233.43 Aligned_cols=235 Identities=19% Similarity=0.264 Sum_probs=187.5
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
...+|...|+|++ +||++||+|+.||+|+|||+.+++++. ++.+|.+.|++++| +++ +|++|+.|+.|++|
T Consensus 10 ~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~v~~--~~~--~l~s~s~D~~i~~~ 80 (293)
T d1p22a2 10 CRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVW 80 (293)
T ss_dssp CCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEE
T ss_pred ccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEeeeec--ccc--eeeccccccccccc
Confidence 3567888999865 589999999999999999999987665 68899999999887 566 89999999999999
Q ss_pred e-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCccee---eecCCCccEEEEEEecCCCeEEEe
Q 001184 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV---DYDAPGLWCTTMLYSADGSRLFSC 559 (1130)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1130)
+ ..+........+........ .....++++..++.+.+|+........ .+..+...+..+.+.+ ..++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~ 154 (293)
T d1p22a2 81 DVNTGEMLNTLIHHCEAVLHLR----FNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSA 154 (293)
T ss_dssp ESSSCCEEEEECCCCSCEEEEE----CCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEE
T ss_pred cccccccccccccccccccccc----ccccceeecccccceeEeeccccccccccccccccccccccceecc--cccccc
Confidence 9 77777776665555554443 233578999999999999998765433 4555666777666654 456666
Q ss_pred eecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEE
Q 001184 560 GTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLR 639 (1130)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~ 639 (1130)
+. ++.|++||..+++.+..+.++.. .+..+.+ ++.++++++.||.|++||+.+.+.+.....+.. .+ ..
T Consensus 155 s~----d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v--~~ 223 (293)
T d1p22a2 155 SG----DRTIKVWNTSTCEFVRTLNGHKR-GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LV--RC 223 (293)
T ss_dssp ET----TSEEEEEETTTCCEEEEEECCSS-CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CE--EE
T ss_pred cC----CCceeeecCCCCcEEEEEccccc-ccccccC--CCCeEEEecCCCEEEEEecccceeeeeecccce--ee--ee
Confidence 64 89999999999999999988655 5666655 467899999999999999999998888765543 33 35
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 640 FNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 640 ~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+++++.+|++++.||.|++||+...
T Consensus 224 ~~~~~~~l~sg~~dg~i~iwd~~~~ 248 (293)
T d1p22a2 224 IRFDNKRIVSGAYDGKIKVWDLVAA 248 (293)
T ss_dssp EECCSSEEEEEETTSCEEEEEHHHH
T ss_pred ccccceEEEEEcCCCEEEEEECCCC
Confidence 6678899999999999999997544
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=8.8e-25 Score=247.35 Aligned_cols=286 Identities=13% Similarity=0.121 Sum_probs=206.2
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEE------EEEc
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSR------VAWS 418 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~------v~~s 418 (1130)
+|...|.++++++ + ++++|+.|++|+|||..+.+........ .....|...+.. +..+
T Consensus 12 ~H~~~I~~v~~~~--~-~l~S~S~D~~iriWd~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 75 (393)
T d1sq9a_ 12 AHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDKS-------------YSHFVHKSGLHHVDVLQAIERD 75 (393)
T ss_dssp CSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGGE-------------EEEECCTTCEEEEEEEEEEETT
T ss_pred cccCccEEEEEeC--C-EEEEEECCCeEEEEECCCCCCCccccee-------------EeeeeccCCceEeeeEeeeccC
Confidence 4999999999876 4 4899999999999998765532210000 011233333322 2222
Q ss_pred C-CCCEEEEEeCCCeEEEEEecCCccceeeee-------eecCCCCeeEEEEecCCC---ceEEEEEcCCCcEEEEec--
Q 001184 419 P-DGNFIGVAFTKHLIHLYTYQGSNDLCQSLE-------IDAHVGGVNDLAFSYPNK---QLCIVTCGDDKLIRVWDL-- 485 (1130)
Q Consensus 419 p-dg~~las~~~d~~i~vwd~~~~~~~~~~~~-------~~~h~~~V~~i~~s~d~~---~l~l~s~s~d~~v~iwd~-- 485 (1130)
+ ++.++++++.||.|++|++........... ...+...+..++|.+++. ..++++++.|+++++||.
T Consensus 76 ~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~ 155 (393)
T d1sq9a_ 76 AFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 155 (393)
T ss_dssp TEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred CCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeec
Confidence 2 345788999999999999876554322111 123556688899988643 127899999999999992
Q ss_pred CCC-----------------eeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceee------ecCCCc
Q 001184 486 SGR-----------------KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD------YDAPGL 542 (1130)
Q Consensus 486 ~~~-----------------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~------~~~~~~ 542 (1130)
.+. .......+...+.+++|++ ++ +|++|+.||+|++||+++.+.... +..|..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~--dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~ 232 (393)
T d1sq9a_ 156 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN 232 (393)
T ss_dssp SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCC
T ss_pred CCcccceeeeeeccceecccceecccCCCCcEEEEEECC--CC-EEEEEeCCCcEEEEeecccccccccccccccccccc
Confidence 211 0111234556688898865 33 899999999999999998776553 345778
Q ss_pred cEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEe-------------cccCceeEEEEEcCCCCEEEEEeCC
Q 001184 543 WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYI-------------GFRKKSAGVVQFDTTRNRILAAGED 609 (1130)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~~~~~d 609 (1130)
+|.+++|+|+|++|++++.+. ..+.|++||+++++.+..+. +|.. .|.+++|+|++++|++++.|
T Consensus 233 ~V~~l~~spdg~~l~sgs~D~-t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~-~V~~l~fspd~~~l~S~s~D 310 (393)
T d1sq9a_ 233 SIRSVKFSPQGSLLAIAHDSN-SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-WVMSLSFNDSGETLCSAGWD 310 (393)
T ss_dssp CEEEEEECSSTTEEEEEEEET-TEEEEEEEETTTCCEEEEECBC--------CCBSBSS-CEEEEEECSSSSEEEEEETT
T ss_pred eEEEcccccccceeeeecCCC-CcceeeecccccceeeeeeccccccccceeeeecccC-ceeeeccCCCCCeeEEECCC
Confidence 999999999999999998621 13579999999999888775 5544 79999999999999999999
Q ss_pred CcEEEEeCCCCceeEEEeccCCCC--CcceEEEcCCCCEEEEEe
Q 001184 610 NQIKFWDMDNVNMLTSTEAEGGLP--SLPRLRFNKEGNLLVVTT 651 (1130)
Q Consensus 610 g~i~vwd~~~~~~~~~~~~~~~~~--~i~~v~~s~~~~~l~~~~ 651 (1130)
++|++||+.+++++.++..|.... ....++|+|++..+++++
T Consensus 311 ~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~ 354 (393)
T d1sq9a_ 311 GKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354 (393)
T ss_dssp SEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred CEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence 999999999999999998775421 123588999998876443
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=1.3e-26 Score=259.39 Aligned_cols=191 Identities=16% Similarity=0.116 Sum_probs=156.9
Q ss_pred EEEEec-CCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCC
Q 001184 352 SMDFHP-FHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTK 430 (1130)
Q Consensus 352 ~v~fsp-dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d 430 (1130)
.-.||| ||++ +|+++ +|.|+|||+.++..+. .+|...|.+++|||||++|++++.+
T Consensus 7 ~~~fSP~dG~~-~a~~~-~g~v~v~d~~~~~~~~---------------------~~~~~~v~~~~~spDg~~l~~~~~~ 63 (360)
T d1k32a3 7 AEDFSPLDGDL-IAFVS-RGQAFIQDVSGTYVLK---------------------VPEPLRIRYVRRGGDTKVAFIHGTR 63 (360)
T ss_dssp EEEEEECGGGC-EEEEE-TTEEEEECTTSSBEEE---------------------CSCCSCEEEEEECSSSEEEEEEEET
T ss_pred cccccCCCCCE-EEEEE-CCeEEEEECCCCcEEE---------------------ccCCCCEEEEEECCCCCEEEEEEcC
Confidence 356999 9985 77765 5799999999887653 2688999999999999999987765
Q ss_pred C--eEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecc
Q 001184 431 H--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQ 507 (1130)
Q Consensus 431 ~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~ 507 (1130)
. .|++||.++++.. .+..|...|.+++|+|||+ +|++++.++.+++|+ ..++....+..|...+.+++|++
T Consensus 64 ~g~~v~v~d~~~~~~~----~~~~~~~~v~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 137 (360)
T d1k32a3 64 EGDFLGIYDYRTGKAE----KFEENLGNVFAMGVDRNGK--FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD 137 (360)
T ss_dssp TEEEEEEEETTTCCEE----ECCCCCCSEEEEEECTTSS--EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT
T ss_pred CCCEEEEEECCCCcEE----EeeCCCceEEeeeeccccc--ccceeccccccccccccccceeeeeecccccccchhhcc
Confidence 3 7999999987643 3678999999999999999 899999999999999 78888888889999999999965
Q ss_pred cCCccEEEEEe----------cCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCC
Q 001184 508 KENIHFIFSTA----------VDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577 (1130)
Q Consensus 508 ~~~~~~l~s~s----------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1130)
++++|+.++ .++.+++|++.+.+... +..+...+..++|+|||++|++++. ++.+.+|+....
T Consensus 138 --dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~----~~~~~~~d~~~~ 210 (360)
T d1k32a3 138 --NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSY----RSLDPSPDRVVL 210 (360)
T ss_dssp --TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEES----CCCCCEECSSSS
T ss_pred --ceeeeeeeccccccceeeccccceeeeccccCceee-ecccccccccccccCCCCEEEEEeC----CCceEccccccc
Confidence 557787553 34568999998765443 4446667889999999999999885 778899987654
Q ss_pred c
Q 001184 578 A 578 (1130)
Q Consensus 578 ~ 578 (1130)
.
T Consensus 211 ~ 211 (360)
T d1k32a3 211 N 211 (360)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.93 E-value=2.7e-25 Score=248.54 Aligned_cols=288 Identities=11% Similarity=0.043 Sum_probs=211.4
Q ss_pred eeccCCCCEEEEEEecCCCeEEEEEeCcC-eEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC
Q 001184 342 CTMHQGSSVVSMDFHPFHHTLLVVGCGDG-EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1130)
Q Consensus 342 ~~~~h~~~V~~v~fspdg~~llasg~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 420 (1130)
..+.|...|.+++|||||++|++++..++ .|++||+.+++... +..|...|.+++|+||
T Consensus 37 ~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~--------------------~~~~~~~v~~~~~spd 96 (360)
T d1k32a3 37 LKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK--------------------FEENLGNVFAMGVDRN 96 (360)
T ss_dssp EECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE--------------------CCCCCCSEEEEEECTT
T ss_pred EEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEE--------------------eeCCCceEEeeeeccc
Confidence 34579999999999999997555555543 79999999887653 5689999999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEE----------cCCCcEEEEecCCCee
Q 001184 421 GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTC----------GDDKLIRVWDLSGRKL 490 (1130)
Q Consensus 421 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~----------s~d~~v~iwd~~~~~~ 490 (1130)
|++|++++.++.+++|++.+++... .+..|...+.+++|+|||+ +|+.+ ..++.+++||..+...
T Consensus 97 g~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~spdg~--~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~ 171 (360)
T d1k32a3 97 GKFAVVANDRFEIMTVDLETGKPTV---IERSREAMITDFTISDNSR--FIAYGFPLKHGETDGYVMQAIHVYDMEGRKI 171 (360)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCCEEECTTSC--EEEEEEEECSSTTCSCCEEEEEEEETTTTEE
T ss_pred ccccceeccccccccccccccceee---eeecccccccchhhcccee--eeeeeccccccceeeccccceeeeccccCce
Confidence 9999999999999999999987544 5678899999999999999 56543 3456799999666666
Q ss_pred eEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcce-------eeecCCCccEEEEEEecCCCeEEEeeecC
Q 001184 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR-------VDYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1130)
Q Consensus 491 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-------~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1130)
..+..|...+..++|++ +++.|++++.++.+++|+....... .....+...+..+.|++++..++.+....
T Consensus 172 ~~~~~~~~~~~~~~~sp--dg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 249 (360)
T d1k32a3 172 FAATTENSHDYAPAFDA--DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDL 249 (360)
T ss_dssp EECSCSSSBEEEEEECT--TSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCC
T ss_pred eeecccccccccccccC--CCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceee
Confidence 66667888888888854 6689999999999999987553322 12222333334455666666665443211
Q ss_pred C-CCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCC---CEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEE
Q 001184 564 E-GDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTR---NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLR 639 (1130)
Q Consensus 564 ~-~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~ 639 (1130)
. ....+..++...+... .+..+.+ .+..+.+.+.+ .++++++.++.|++||+.+++...... .|.+++
T Consensus 250 ~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~------~v~~~~ 321 (360)
T d1k32a3 250 NDMYKRSSPINVDPGDYR-MIIPLES-SILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKN------NLTDLR 321 (360)
T ss_dssp TTGGGGCEECSCCCBCEE-EEEECSS-EEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEE------EEEEEE
T ss_pred cccccceeecccCcCcee-EeeecCC-CceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEecC------CcCEEE
Confidence 1 1223555555555433 3333333 44445555444 367778899999999999876543221 478999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 640 FNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 640 ~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
|+|||++|++++.||.|++|+++.+
T Consensus 322 ~SpDG~~l~~~~~Dg~i~v~d~~~~ 346 (360)
T d1k32a3 322 LSADRKTVMVRKDDGKIYTFPLEKP 346 (360)
T ss_dssp ECTTSCEEEEEETTSCEEEEESSCT
T ss_pred ECCCCCEEEEEECCCeEEEEECCCC
Confidence 9999999999999999999999887
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.92 E-value=1.5e-23 Score=239.67 Aligned_cols=357 Identities=10% Similarity=0.031 Sum_probs=246.4
Q ss_pred ecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEe
Q 001184 505 PHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYI 584 (1130)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1130)
+..+....++++.+.||+|++||+.+++.+..+..+. .+..++|+|||+++++++. ++.|++||+.+++......
T Consensus 26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~----d~~v~vwd~~t~~~~~~~~ 100 (426)
T d1hzua2 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGR----DARIDMIDLWAKEPTKVAE 100 (426)
T ss_dssp SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEET----TSEEEEEETTSSSCEEEEE
T ss_pred ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeC----CCCEEEEEccCCceeEEEE
Confidence 3333344467888999999999999999888888764 5899999999999999875 7899999999987654332
Q ss_pred -----cccCceeEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCE-EEEEeCCCcEE
Q 001184 585 -----GFRKKSAGVVQFDTTRNRILAA-GEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNL-LVVTTADQGIK 657 (1130)
Q Consensus 585 -----~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~-l~~~~~dg~i~ 657 (1130)
+|. ..+.+++|+|||++++++ ..++.+++||..++..+.....+.. .+..+.+.+++.. .++++.|+...
T Consensus 101 i~~~~~~~-~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~s~d~~~~ 177 (426)
T d1hzua2 101 IKIGIEAR-SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM--TVDTQTYHPEPRVAAIIASHEHPEF 177 (426)
T ss_dssp EECCSEEE-EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEE--CSSSCCEESCCCEEEEEECSSSSEE
T ss_pred EeCCCCCc-ceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCC--CccceeecCCCceeEEEECCCCCEE
Confidence 222 245567788999987654 5889999999999999888876654 4566667776654 34556666665
Q ss_pred EEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCccccccc
Q 001184 658 ILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDI 737 (1130)
Q Consensus 658 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1130)
++.....
T Consensus 178 ~~~~~~~------------------------------------------------------------------------- 184 (426)
T d1hzua2 178 IVNVKET------------------------------------------------------------------------- 184 (426)
T ss_dssp EEEETTT-------------------------------------------------------------------------
T ss_pred EEecCCC-------------------------------------------------------------------------
Confidence 5543221
Q ss_pred CCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCccccccccccccc
Q 001184 738 SDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQ 817 (1130)
Q Consensus 738 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~ 817 (1130)
+.+.++... ++..+. +..
T Consensus 185 -~~i~~~~~~------------------------------~~~~~~---------~~~---------------------- 202 (426)
T d1hzua2 185 -GKVLLVNYK------------------------------DIDNLT---------VTS---------------------- 202 (426)
T ss_dssp -TEEEEEECS------------------------------SSSSCE---------EEE----------------------
T ss_pred -CeEEEEEec------------------------------ccccee---------eEE----------------------
Confidence 000000000 000000 000
Q ss_pred CCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe--CCeEEEEECCCceeEEEEeCC--CCCeEEEEEeCCCCc--EEE
Q 001184 818 PSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSP--PPASTFLAFHPQDNN--IIA 891 (1130)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~sp~~~~--~la 891 (1130)
. .+...+..++++|++++++++. ++.+.+++..+++........ ........+...... ..+
T Consensus 203 ----------~--~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (426)
T d1hzua2 203 ----------I--GAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWST 270 (426)
T ss_dssp ----------E--ECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEE
T ss_pred ----------e--ccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEe
Confidence 0 2456678899999999988887 577999999999988777632 222333444331222 222
Q ss_pred EEeCCCcEEEEEeec-------CeEEEEEecCCCCeeEEEEccCCCeEEE-------EeCCCcEEEEECCCCcccceeeE
Q 001184 892 IGMEDSTIQIYNVRV-------DEVKTKLKGHQKHITGLAFSTNLNILVS-------SGSDAQLIFWNTDTWEKRKSIAI 957 (1130)
Q Consensus 892 sg~~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~dg~~L~s-------~s~Dg~i~vwd~~~~~~~~~~~~ 957 (1130)
..+.|+.+.+|+... ++....+.+|...+..++|+||+++|++ ++.|++|+|||+.+++.......
T Consensus 271 ~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~ 350 (426)
T d1hzua2 271 SHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLP 350 (426)
T ss_dssp ECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEEC
T ss_pred ccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEec
Confidence 344577888887654 4788899999999999999999999994 45688999999999776543221
Q ss_pred e---ccCCCCCCCeEEEEEcCCCcEEEEE------cCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEE
Q 001184 958 Q---LPAGKLPVGETRVQFHSDQVRLLVN------HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIY 1025 (1130)
Q Consensus 958 ~---~~~~~~~~~v~~~~~s~d~~~l~~~------~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 1025 (1130)
. .........+.+++|||||++++++ .++.|+|||.++++....+.... .++|+|+|-+
T Consensus 351 ~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~---------~~tp~Gk~~~ 418 (426)
T d1hzua2 351 IAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR---------LITPTGKFNV 418 (426)
T ss_dssp HHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT---------CCSEEEEEEH
T ss_pred cchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC---------ccCCCceEeE
Confidence 0 0111223568899999999977542 47789999999999988876652 4468887743
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.92 E-value=1.9e-23 Score=237.72 Aligned_cols=351 Identities=11% Similarity=0.029 Sum_probs=248.4
Q ss_pred cEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCcee--EEEec--cc
Q 001184 512 HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK--RTYIG--FR 587 (1130)
Q Consensus 512 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~--~~~~~--~~ 587 (1130)
-++++.+.||+|.+||.++.+....+..+ ..+..++|+|||+++++++. ++.+.+||+.+++.. ..+.. .+
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~----dg~v~~~d~~t~~~~~~~~i~~~~~~ 107 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGR----DGKVNMIDLWMKEPTTVAEIKIGSEA 107 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEET----TSEEEEEETTSSSCCEEEEEECCSEE
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcC----CCCEEEEEeeCCCceEEEEEecCCCC
Confidence 34689999999999999999999988766 46899999999999999875 889999999887643 33331 12
Q ss_pred CceeEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceeEEEeccCCC---------CCcceEEEcCCCCEEE-EEeCCCcE
Q 001184 588 KKSAGVVQFDTTRNRI-LAAGEDNQIKFWDMDNVNMLTSTEAEGGL---------PSLPRLRFNKEGNLLV-VTTADQGI 656 (1130)
Q Consensus 588 ~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~---------~~i~~v~~s~~~~~l~-~~~~dg~i 656 (1130)
...+....|+|||+++ ++++.++.|++||..+++.+..+..+... .....+.++|++..++ +...++.+
T Consensus 108 ~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i 187 (432)
T d1qksa2 108 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 187 (432)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred CCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeE
Confidence 2244556788999986 56788999999999999999887755321 1223344455444432 22333444
Q ss_pred EEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccc
Q 001184 657 KILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLED 736 (1130)
Q Consensus 657 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1130)
.+|+..+..
T Consensus 188 ~~~d~~~~~----------------------------------------------------------------------- 196 (432)
T d1qksa2 188 LLVDYTDLN----------------------------------------------------------------------- 196 (432)
T ss_dssp EEEETTCSS-----------------------------------------------------------------------
T ss_pred EEEEccCCC-----------------------------------------------------------------------
Confidence 444432220
Q ss_pred cCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccc
Q 001184 737 ISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHW 816 (1130)
Q Consensus 737 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w 816 (1130)
..+++++
T Consensus 197 -----------------------------------------------------~~~~~~i-------------------- 203 (432)
T d1qksa2 197 -----------------------------------------------------NLKTTEI-------------------- 203 (432)
T ss_dssp -----------------------------------------------------EEEEEEE--------------------
T ss_pred -----------------------------------------------------cceEEEE--------------------
Confidence 0001100
Q ss_pred cCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe--CCeEEEEECCCceeEEEEeC-----CCCCeEEEEEeCCCCcE
Q 001184 817 QPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMS-----PPPASTFLAFHPQDNNI 889 (1130)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~sp~~~~~ 889 (1130)
.+...+..++|+|||+++++++ ++.+.++|..+++....+.. |........+.. .+..
T Consensus 204 --------------~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~g~~ 268 (432)
T d1qksa2 204 --------------SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPT-FGPV 268 (432)
T ss_dssp --------------ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETT-TEEE
T ss_pred --------------cccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCC-CCce
Confidence 1344567899999999888887 57899999999988877653 333344455544 5555
Q ss_pred EEEEe-CCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCe
Q 001184 890 IAIGM-EDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGE 968 (1130)
Q Consensus 890 lasg~-~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v 968 (1130)
.++.. .++.|.+|+..... +..|...|....++|++..+++++.+.+.++|+..+... +....
T Consensus 269 ~~~~~lg~~~v~~~~~~~~~----~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~------------~~~~~ 332 (432)
T d1qksa2 269 WATSHMGDDSVALIGTDPEG----HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNP------------EAEIS 332 (432)
T ss_dssp EEEEBSSSSEEEEEECCTTT----CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCS------------SHHHH
T ss_pred ecccccCCceEEeccccccc----ccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCC------------CCCee
Confidence 55443 47889999876543 356778899999999999999999999999998765321 11122
Q ss_pred EEEEEcCCCcEEEE-EcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEe-----CCCcEEEEeCCCcc
Q 001184 969 TRVQFHSDQVRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATF-----TDGSIGVFDADSLR 1042 (1130)
Q Consensus 969 ~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~-----~Dg~i~vwd~~~~~ 1042 (1130)
..+++ ||++.+++ +.|+.+++|++.++..+. . |...|.+++|||||++++.+. .+|.|.|||..+++
T Consensus 333 ~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l~---~---~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k 405 (432)
T d1qksa2 333 GSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGIT---E---GQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE 405 (432)
T ss_dssp TCEEE-EEGGGCCCSSSCCCEEEECHHHHHTCC---S---SCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred eEEEE-EechhhcccccCCceEecccccccccC---C---CCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCce
Confidence 33444 89998888 578999999986653332 2 256799999999999886664 46899999999999
Q ss_pred cccccCC
Q 001184 1043 LRCRIAP 1049 (1130)
Q Consensus 1043 ~~~~~~~ 1049 (1130)
+...+..
T Consensus 406 ~~~~i~~ 412 (432)
T d1qksa2 406 LKHVIKD 412 (432)
T ss_dssp EEEEECC
T ss_pred EEeEecC
Confidence 8777653
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.88 E-value=6.9e-20 Score=198.17 Aligned_cols=268 Identities=10% Similarity=0.072 Sum_probs=209.1
Q ss_pred eEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE-EEeCCCeEEEEEec
Q 001184 361 TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG-VAFTKHLIHLYTYQ 439 (1130)
Q Consensus 361 ~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la-s~~~d~~i~vwd~~ 439 (1130)
|+.++++.|++|.|||+++++.+.. +. ....+..++|||||++|+ +++.++.|++||+.
T Consensus 3 ~~yV~~~~~~~v~v~D~~t~~~~~~-------------------i~-~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~ 62 (301)
T d1l0qa2 3 FAYIANSESDNISVIDVTSNKVTAT-------------------IP-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEE-------------------EE-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEECCCCEEEEEECCCCeEEEE-------------------EE-CCCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence 5567788899999999999987752 21 224578999999999875 66778999999999
Q ss_pred CCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEe
Q 001184 440 GSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA 518 (1130)
Q Consensus 440 ~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s 518 (1130)
+++.+. .+..|. .+..++|++++.. +++++..++.+.+|+ .+++.+..+.. .....+++++++.. .+++++.
T Consensus 63 t~~~~~---~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~-~~~~~~~ 135 (301)
T d1l0qa2 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGK-KLYVTNN 135 (301)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSS-EEEEEET
T ss_pred CCceee---eeeccc-ccccccccccccc-ccccccccceeeecccccceeeeeccc-cccceEEEeecCCC-eeeeeec
Confidence 987654 455554 4689999999986 567788899999999 66777777764 45667788865432 3445666
Q ss_pred cCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcC
Q 001184 519 VDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT 598 (1130)
Q Consensus 519 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1130)
.++.+.+|+..+......+.... .+..++++|+++.++++.. ..+.+.+|+....+.......+. ....+++++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 209 (301)
T d1l0qa2 136 GDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVEA--APSGIAVNP 209 (301)
T ss_dssp TTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--EEEEEEECT
T ss_pred cccceeeeeccccceeeecccCC-CceEEEeeccccceeeecc---cccccccccccceeeeecccccC--Ccceeeccc
Confidence 78899999999887777666544 4788999999999988864 25778888888777777666432 467788999
Q ss_pred CCCEEEEEeC---CCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEE-EEEeCCCcEEEEEcCCC
Q 001184 599 TRNRILAAGE---DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLL-VVTTADQGIKILANADG 664 (1130)
Q Consensus 599 ~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l-~~~~~dg~i~iw~~~~~ 664 (1130)
+++.++.++. ++.|++||..+++.+..+.... .+.+++|+|||++| ++++.++.|++||+.++
T Consensus 210 ~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~---~~~~va~spdg~~l~va~~~~~~i~v~D~~t~ 276 (301)
T d1l0qa2 210 EGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFCNTVSVIDTATN 276 (301)
T ss_dssp TSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred cccccccccccceeeeeeeeecCCCeEEEEEcCCC---CEEEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence 9998876543 4689999999999988876543 47899999999987 56677899999999887
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.86 E-value=2.1e-19 Score=194.36 Aligned_cols=272 Identities=12% Similarity=0.093 Sum_probs=207.8
Q ss_pred cCCCCCcccccCCcccceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceee
Q 001184 323 PVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQA 402 (1130)
Q Consensus 323 s~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1130)
+.++.+.+|+... .++...+.....+..++|||||++++++++.++.|++||+.+++.+..
T Consensus 9 ~~~~~v~v~D~~t--~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~----------------- 69 (301)
T d1l0qa2 9 SESDNISVIDVTS--NKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT----------------- 69 (301)
T ss_dssp TTTTEEEEEETTT--TEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE-----------------
T ss_pred CCCCEEEEEECCC--CeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeee-----------------
Confidence 4455667776544 567777777788999999999998778888899999999999987752
Q ss_pred eeecCCCccEEEEEEcCCCCEEEE-EeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001184 403 AIVKDSSISVSRVAWSPDGNFIGV-AFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR 481 (1130)
Q Consensus 403 ~~~~~h~~~V~~v~~spdg~~las-~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~ 481 (1130)
+..|. .+..++|+++++++++ +..++.+.+|+..+++... .+. +...+.+++|+|+++. +++++..++.+.
T Consensus 70 --~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~dg~~-~~~~~~~~~~~~ 141 (301)
T d1l0qa2 70 --VPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG---TVK-TGKSPLGLALSPDGKK-LYVTNNGDKTVS 141 (301)
T ss_dssp --EECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE---EEE-CSSSEEEEEECTTSSE-EEEEETTTTEEE
T ss_pred --eeccc-cccccccccccccccccccccceeeecccccceeee---ecc-ccccceEEEeecCCCe-eeeeecccccee
Confidence 33443 5789999999996655 5567899999999876554 333 4556889999999996 567788899999
Q ss_pred EEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecC-CcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEe
Q 001184 482 VWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD-GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSC 559 (1130)
Q Consensus 482 iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1130)
+|+ .++..+..+..+ ..+..+.+++ ++..+++++.+ +.+.+|+............ ...+..++++++++.++++
T Consensus 142 ~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~v~ 217 (301)
T d1l0qa2 142 VINTVTKAVINTVSVG-RSPKGIAVTP--DGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVT 217 (301)
T ss_dssp EEETTTTEEEEEEECC-SSEEEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEE
T ss_pred eeeccccceeeecccC-CCceEEEeec--cccceeeecccccccccccccceeeeecccc-cCCcceeeccccccccccc
Confidence 999 777777777644 4577777765 44566666554 5667777666555444443 3457889999999998877
Q ss_pred eecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceeEEEec
Q 001184 560 GTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRI-LAAGEDNQIKFWDMDNVNMLTSTEA 628 (1130)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~ 628 (1130)
..+ ...+.|++||..+++.+..+..+. .+..++|+|+|+++ ++++.++.|++||+.+++.+.++..
T Consensus 218 ~~~-~~~~~v~v~D~~t~~~~~~~~~~~--~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v 284 (301)
T d1l0qa2 218 NVD-KYFNTVSMIDTGTNKITARIPVGP--DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV 284 (301)
T ss_dssp EEC-SSCCEEEEEETTTTEEEEEEECCS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ccc-ceeeeeeeeecCCCeEEEEEcCCC--CEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence 542 235789999999999988877533 57889999999987 4677899999999999999988864
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.85 E-value=6.5e-21 Score=211.02 Aligned_cols=331 Identities=9% Similarity=-0.017 Sum_probs=223.0
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEE-EeCCCcEEEEEcCCCchhhhhhc
Q 001184 594 VQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVV-TTADQGIKILANADGLRALRAIE 672 (1130)
Q Consensus 594 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~ 672 (1130)
++++++++++++++.++.|.+||+.+++.+.++..+... .+.+++|+|||+++++ +..++.|.+||+.++.. ...+.
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~-~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~-~~~~~ 79 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKF-GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-TFHAN 79 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCC-SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCC-CcceEEECCCCCEEEEEECCCCcEEEEeCccCee-eeeec
Confidence 468899999999999999999999999999988764332 4689999999998755 45789999999987732 11111
Q ss_pred ccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCC
Q 001184 673 TRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDP 752 (1130)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~ 752 (1130)
.....
T Consensus 80 ~~~~~--------------------------------------------------------------------------- 84 (346)
T d1jmxb_ 80 LSSVP--------------------------------------------------------------------------- 84 (346)
T ss_dssp SCCST---------------------------------------------------------------------------
T ss_pred ccccc---------------------------------------------------------------------------
Confidence 00000
Q ss_pred cceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCC
Q 001184 753 LQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENA 832 (1130)
Q Consensus 753 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 832 (1130)
......+..++|+|||+.++++..+.....|.... ....+.+|+..++...........
T Consensus 85 -----------~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~~~~~~~ 143 (346)
T d1jmxb_ 85 -----------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV----------KPPRLEVFSTADGLEAKPVRTFPM 143 (346)
T ss_dssp -----------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEE----------CCCEEEEEEGGGGGGBCCSEEEEC
T ss_pred -----------cccCCceEEEEEecCCCEEEEEecCCcceeeeecc----------CcceEEEEecccceeeeEEEeeec
Confidence 00122345688999999988877643333221110 011123344444333221110112
Q ss_pred CCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEE
Q 001184 833 EDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK 912 (1130)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 912 (1130)
...+..+.+++++++++. ++.+.+|++.+++.+..+..+. ....+.++|++..+++.+..++.+.+++..
T Consensus 144 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 213 (346)
T d1jmxb_ 144 PRQVYLMRAADDGSLYVA--GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTI------- 213 (346)
T ss_dssp CSSCCCEEECTTSCEEEE--SSSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEE-------
T ss_pred cCceEEEEecCCCEEEEe--CCcceEEEccCCCEEEEEecCC-CccceEEeccccEEEEEecCCCceEeeeee-------
Confidence 344556777888876654 4568999999999998887543 356677888444444555556666665532
Q ss_pred EecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEE
Q 001184 913 LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYD 992 (1130)
Q Consensus 913 l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d 992 (1130)
..+.+....++++..++.+.+|++.++......... ....+..+.+++++.+++...++.+.+||
T Consensus 214 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~v~d 278 (346)
T d1jmxb_ 214 ----------ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD-----LTELYFTGLRSPKDPNQIYGVLNRLAKYD 278 (346)
T ss_dssp ----------EEC-------CCCEEEEEEEEEETTTCCEEEEEEEE-----CSSCEEEEEECSSCTTEEEEEESEEEEEE
T ss_pred ----------eeeccCceeEeeccCCceEEEEECCCCceEEEEeec-----ccceeEEEEEeCCCCEEEEecCCeEEEEE
Confidence 122334455666777788999999986654332221 22567888999999988887778999999
Q ss_pred CCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCc
Q 001184 993 GSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSA 1051 (1130)
Q Consensus 993 ~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~ 1051 (1130)
..+++.+..+... ..+.+++|||||++|++++.|+.|+|||+++++.+..+..+.
T Consensus 279 ~~~~~~~~~~~~~----~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~ 333 (346)
T d1jmxb_ 279 LKQRKLIKAANLD----HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPG 333 (346)
T ss_dssp TTTTEEEEEEECS----SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSS
T ss_pred CCCCcEEEEEcCC----CCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCC
Confidence 9999998887643 478999999999999999999999999999999998887433
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.85 E-value=8.2e-20 Score=201.14 Aligned_cols=293 Identities=12% Similarity=0.100 Sum_probs=197.1
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEE-EEeCCCcEEEEEcCCCchhhhhhcccccccc
Q 001184 601 NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLV-VTTADQGIKILANADGLRALRAIETRAYETS 679 (1130)
Q Consensus 601 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 679 (1130)
+++++++.|++|+|||+.+++.+..+..+.....+..++|+|||++++ +++.++.|.+||+.++. ....+..+..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~-~~~~~~~~~~--- 77 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE-TLGRIDLSTP--- 77 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC-EEEEEECCBT---
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCc-EEEEEecCCC---
Confidence 479999999999999999999999998766555678999999999875 56678999999998772 2211111000
Q ss_pred cccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEE
Q 001184 680 RASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVA 759 (1130)
Q Consensus 680 ~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~ 759 (1130)
T Consensus 78 -------------------------------------------------------------------------------- 77 (337)
T d1pbyb_ 78 -------------------------------------------------------------------------------- 77 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEE
Q 001184 760 MPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCV 839 (1130)
Q Consensus 760 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l 839 (1130)
..+...+..++|+|+++.++++..+.....|..
T Consensus 78 ----~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~------------------------------------------- 110 (337)
T d1pbyb_ 78 ----EERVKSLFGAALSPDGKTLAIYESPVRLELTHF------------------------------------------- 110 (337)
T ss_dssp ----TEEEECTTCEEECTTSSEEEEEEEEEEECSSCE-------------------------------------------
T ss_pred ----cccccceeeEEEcCCCcEEEEeecCCcceeeec-------------------------------------------
Confidence 002233446788899988888776655433321
Q ss_pred EEecCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCC
Q 001184 840 ALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKH 919 (1130)
Q Consensus 840 ~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~ 919 (1130)
...+..+.+||..+++....+.. ...+..++|+| +++++++++. .+.+||..+++....+..+...
T Consensus 111 ----------~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~ 176 (337)
T d1pbyb_ 111 ----------EVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWE 176 (337)
T ss_dssp ----------EECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEESS--SEEEEETTTTEEEEEECSTTTT
T ss_pred ----------cccccceeeccccCCeEEEeccc-cCCceEEEEcC-CCCEEEEEcC--CcceeeeecCcEEEEeecCCcc
Confidence 11244556666666666655553 23455666666 5555555543 3555666666655555432211
Q ss_pred eeEEEEccC------------------------CCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcC
Q 001184 920 ITGLAFSTN------------------------LNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHS 975 (1130)
Q Consensus 920 V~~l~~s~d------------------------g~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 975 (1130)
....++++ .......+.++.+.+|++.++........ ........+.+++
T Consensus 177 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 250 (337)
T d1pbyb_ 177 -AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR-----IMDVFYFSTAVNP 250 (337)
T ss_dssp -TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE-----ECSSCEEEEEECT
T ss_pred -ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEec-----CCCcceEEEEecc
Confidence 11111221 12222223355688999888654332221 2235678889999
Q ss_pred CCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCC
Q 001184 976 DQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAP 1049 (1130)
Q Consensus 976 d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1049 (1130)
++.++++. ++.+++||+.+++.+..+... ..+.+++|+|||++|++++.|+.|+|||.++++.+..+..
T Consensus 251 ~~~~~~~~-~~~i~v~d~~~~~~~~~~~~~----~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 251 AKTRAFGA-YNVLESFDLEKNASIKRVPLP----HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp TSSEEEEE-ESEEEEEETTTTEEEEEEECS----SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred cceEEEEc-cccEEEEECCCCcEEEEEcCC----CCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence 99988765 589999999999999887543 5789999999999999999999999999999999888764
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.84 E-value=1.4e-18 Score=191.21 Aligned_cols=296 Identities=12% Similarity=0.118 Sum_probs=205.7
Q ss_pred cEEEEEecCCcEEEEEccCCcceeeecCC--CccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCc
Q 001184 512 HFIFSTAVDGKIKAWLYDNVGSRVDYDAP--GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK 589 (1130)
Q Consensus 512 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~ 589 (1130)
+++++++.|++|.+||+.+.+....+..+ ...+.+++|+|||+++++++. .++.|.+||+.+++.+..+..+...
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~---~~~~v~v~D~~t~~~~~~~~~~~~~ 78 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---KSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---TTTEEEEEETTTCCEEEEEECCBTT
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEEC---CCCeEEEEECCCCcEEEEEecCCCc
Confidence 58999999999999999998887766543 446789999999999866542 3789999999999999888765332
Q ss_pred ----eeEEEEEcCCCCEEEEEe------------CCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCC
Q 001184 590 ----SAGVVQFDTTRNRILAAG------------EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD 653 (1130)
Q Consensus 590 ----~v~~~~~~~~~~~l~~~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~d 653 (1130)
.+..++|+|+++++++++ .++.+.+||..+++....+.... .+..++|+|+|+++++++.
T Consensus 79 ~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~- 154 (337)
T d1pbyb_ 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR---QITMLAWARDGSKLYGLGR- 154 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS---SCCCEEECTTSSCEEEESS-
T ss_pred ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccC---CceEEEEcCCCCEEEEEcC-
Confidence 234689999999998875 46789999999999888887554 4788999999999998864
Q ss_pred CcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCccc
Q 001184 654 QGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRN 733 (1130)
Q Consensus 654 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1130)
.+.+||..++. ....+..+..... ..++|+
T Consensus 155 -~~~~~d~~~~~-~~~~~~~~~~~~~--------------~~~~~~---------------------------------- 184 (337)
T d1pbyb_ 155 -DLHVMDPEAGT-LVEDKPIQSWEAE--------------TYAQPD---------------------------------- 184 (337)
T ss_dssp -SEEEEETTTTE-EEEEECSTTTTTT--------------TBCCCB----------------------------------
T ss_pred -CcceeeeecCc-EEEEeecCCcccc--------------ceecCC----------------------------------
Confidence 46789887662 2211111000000 000110
Q ss_pred ccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCccccccccc
Q 001184 734 LEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAP 813 (1130)
Q Consensus 734 ~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 813 (1130)
...+|.... . .+...
T Consensus 185 ------~~~~~~~~~-----------------~---------------------~~~~~--------------------- 199 (337)
T d1pbyb_ 185 ------VLAVWNQHE-----------------S---------------------SGVMA--------------------- 199 (337)
T ss_dssp ------CCCCCCCCT-----------------T---------------------TTEEE---------------------
T ss_pred ------cceeecccc-----------------c---------------------cceee---------------------
Confidence 000000000 0 00000
Q ss_pred ccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEE-eCCeEEEEECCCceeEEE-EeCCCCCeEEEEEeCCCCcEEE
Q 001184 814 QHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSA-GGGKVSLFNMMNFKVMTT-FMSPPPASTFLAFHPQDNNIIA 891 (1130)
Q Consensus 814 ~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~-~dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~~~~~la 891 (1130)
........+......+ .++.+.+|+..++..... +..+...+..++++| ++.+++
T Consensus 200 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 256 (337)
T d1pbyb_ 200 ----------------------TPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP-AKTRAF 256 (337)
T ss_dssp ----------------------EEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT-TSSEEE
T ss_pred ----------------------eeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecc-cceEEE
Confidence 0001111111111111 256788999988876554 445677788899999 777777
Q ss_pred EEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCccccee
Q 001184 892 IGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSI 955 (1130)
Q Consensus 892 sg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~ 955 (1130)
.+ ++.|++||+.+++.+..+. +...+.+++|+|||++|++++.|++|++||..+.+.....
T Consensus 257 ~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i 317 (337)
T d1pbyb_ 257 GA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQV 317 (337)
T ss_dssp EE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred Ec--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 65 5889999999999998876 5667899999999999999999999999999997765443
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.81 E-value=6.1e-17 Score=180.87 Aligned_cols=332 Identities=9% Similarity=-0.008 Sum_probs=217.7
Q ss_pred cCCCccEEEEEEcCCCCEEEEE-----eCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEE------
Q 001184 406 KDSSISVSRVAWSPDGNFIGVA-----FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTC------ 474 (1130)
Q Consensus 406 ~~h~~~V~~v~~spdg~~las~-----~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~------ 474 (1130)
..+.+++.+++++|||+.+++. +.++.|.+||..+++.+. ++..+.. ..++|+|||+ +++++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~---~~~~~~~--~~~a~SpDG~--~l~va~~~~~~ 89 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILG---HVNGGFL--PNPVAAHSGS--EFALASTSFSR 89 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEE---EEeCCCC--ccEEEcCCCC--EEEEEeecCCc
Confidence 4678889999999999998765 234579999999988665 4555544 3799999999 45554
Q ss_pred ----cCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEE
Q 001184 475 ----GDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLY 549 (1130)
Q Consensus 475 ----s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 549 (1130)
..++.|.+|| .+++.+..+..+......+... ...+.|
T Consensus 90 ~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~ 132 (373)
T d2madh_ 90 IAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPY-------------------------------------SWMNAN 132 (373)
T ss_pred ccccccceEEEEEECCCCcEEEEEecCCcceeEeccC-------------------------------------CCcEEE
Confidence 3456788888 7777776666554444333211 123678
Q ss_pred ecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceeEEEec
Q 001184 550 SADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRI-LAAGEDNQIKFWDMDNVNMLTSTEA 628 (1130)
Q Consensus 550 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~ 628 (1130)
+++++.++.... +.++.+.+|+..+.+...... ...++.++|+++.+ ++.+.|+.+.+|+...+........
T Consensus 133 s~dg~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~ 205 (373)
T d2madh_ 133 TPNNADLLFFQF--AAGPAVGLVVQGGSSDDQLLS-----SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVG 205 (373)
T ss_pred EeCCCcEEEEEE--cCCCceEEeeccCCeEEEEec-----cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEee
Confidence 888887776654 235678889988776654443 34567899998755 6788999999999998887766543
Q ss_pred cC----CCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeecccccccccc
Q 001184 629 EG----GLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAE 704 (1130)
Q Consensus 629 ~~----~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~ 704 (1130)
.. .......+.+++++.+ +..+.++.+.+|+...+......
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~---------------------------------- 250 (373)
T d2madh_ 206 AMLTAAQNLLTQPAQANKSGRI-VWPVYSGKILQADISAAGATNKA---------------------------------- 250 (373)
T ss_pred eccccCccceeeeEEECCCceE-EEecCCceEEEEEcCCCeEEEEE----------------------------------
Confidence 22 1112334556666644 45567888999987654110000
Q ss_pred ccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEE
Q 001184 705 RVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILA 784 (1130)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~ 784 (1130)
.|+. .........+.|.+...++
T Consensus 251 --------------------------------------~~~~-------------------~~~~~~~~~~~~~~~~~~~ 273 (373)
T d2madh_ 251 --------------------------------------PIDA-------------------LSGGRKADTWRPGGWQQVA 273 (373)
T ss_pred --------------------------------------eecc-------------------ccCcEEeeeeccCcceeeE
Confidence 0000 1111112222222222222
Q ss_pred eeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCC
Q 001184 785 LWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMN 863 (1130)
Q Consensus 785 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~ 863 (1130)
.+.++.. ...+.+++..++... ++.+.+||..+
T Consensus 274 ~~~d~~~----------------------------------------------~~~~~~~~~~~~~~~~~~~v~~~d~~t 307 (373)
T d2madh_ 274 YLKSSDG----------------------------------------------IYLLTSEQSAWKLHAAAKEVTSVTGLV 307 (373)
T ss_pred EecCCCe----------------------------------------------EEEecCCCceEEeecCCCeEEEEECCC
Confidence 2222111 112223344444444 78899999999
Q ss_pred ceeEEEEeCCCCCeEEEEEeCCCCc--EEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccC
Q 001184 864 FKVMTTFMSPPPASTFLAFHPQDNN--IIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTN 928 (1130)
Q Consensus 864 ~~~~~~~~~~~~~i~~l~~sp~~~~--~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d 928 (1130)
++.+..+. +...+..++|+| |++ ++++++.|++|++||+.+++.+.++.++....+.|++.++
T Consensus 308 ~~~~~~~~-~~~~~~~~a~sp-DG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 308 GQTSSQIS-LGHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred CcEEEEec-CCCCeeEEEECC-CCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence 99998876 556789999999 665 4578899999999999999999999988887888887654
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.81 E-value=2.1e-18 Score=190.47 Aligned_cols=312 Identities=8% Similarity=-0.030 Sum_probs=208.6
Q ss_pred cCCccEEEEEecCCcEEEEEccCCcceeeecC-CCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecc
Q 001184 508 KENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA-PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGF 586 (1130)
Q Consensus 508 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1130)
+++++++++++.|++|.+||+.+.+....+.. +...+.+++|+|||+++++++. .++.|++||+.+++.+..+...
T Consensus 5 ~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~---~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 5 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN---HYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEESC
T ss_pred CCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEEC---CCCcEEEEeCccCeeeeeeccc
Confidence 46778999999999999999999888777654 4456789999999999876653 3789999999999998877643
Q ss_pred cCc-----eeEEEEEcCCCCEEEEEe------------CCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEE
Q 001184 587 RKK-----SAGVVQFDTTRNRILAAG------------EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVV 649 (1130)
Q Consensus 587 ~~~-----~v~~~~~~~~~~~l~~~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~ 649 (1130)
... .+..++|+|||+++++++ .++.+.+|+..+++....+........+..+.+++++.+++.
T Consensus 82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA 161 (346)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe
Confidence 221 244689999999988765 467899999988776554443333335677778888876654
Q ss_pred EeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCC
Q 001184 650 TTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIE 729 (1130)
Q Consensus 650 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1130)
++.+.+|+..++. ....+..+..... ..++|+ +
T Consensus 162 ---~~~~~~~~~~~~~-~~~~~~~~~~~~~--------------~~~~~~-----------------------------~ 194 (346)
T d1jmxb_ 162 ---GPDIYKMDVKTGK-YTVALPLRNWNRK--------------GYSAPD-----------------------------V 194 (346)
T ss_dssp ---SSSEEEECTTTCC-EEEEECSTTCCCT--------------TBCCCB-----------------------------C
T ss_pred ---CCcceEEEccCCC-EEEEEecCCCccc--------------eEEecc-----------------------------c
Confidence 3568889887762 2222221111000 012222 2
Q ss_pred Cccc-ccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccc
Q 001184 730 KPRN-LEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKAT 808 (1130)
Q Consensus 730 ~~~~-~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 808 (1130)
..+. ....++.+.++.. ...+.+....+.+...++.+.+|++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 238 (346)
T d1jmxb_ 195 LYFWPHQSPRHEFSMLYT-------------------------IARFKDDKQDPATADLLYGYLSVDLK----------- 238 (346)
T ss_dssp CCCCCCCCTTCEEEEEEE-------------------------EEEC-------CCCEEEEEEEEEETT-----------
T ss_pred cEEEEEecCCCceEeeee-------------------------eeeeccCceeEeeccCCceEEEEECC-----------
Confidence 2111 1111122222211 11112223333444445556666543
Q ss_pred cccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCc
Q 001184 809 AAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNN 888 (1130)
Q Consensus 809 ~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~ 888 (1130)
++....... ..+...+..+.+++++.+++...++.|.+||..+++.+..+. +...+.+++|+| |++
T Consensus 239 -----------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~-DG~ 304 (346)
T d1jmxb_ 239 -----------TGKTHTQEF-ADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDK-KGD 304 (346)
T ss_dssp -----------TCCEEEEEE-EECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEE-CSSCCCEEEECS-SSS
T ss_pred -----------CCceEEEEe-ecccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEc-CCCCEEEEEEcC-CCC
Confidence 333222111 136677888999999999998888899999999999998886 345699999999 889
Q ss_pred EEEEEeCCCcEEEEEeecCeEEEEEecCCCC
Q 001184 889 IIAIGMEDSTIQIYNVRVDEVKTKLKGHQKH 919 (1130)
Q Consensus 889 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~ 919 (1130)
+|++++.||.|++||+++++.+.+++.+.+.
T Consensus 305 ~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g~ 335 (346)
T d1jmxb_ 305 KLYLGGTFNDLAVFNPDTLEKVKNIKLPGGD 335 (346)
T ss_dssp CEEEESBSSEEEEEETTTTEEEEEEECSSSC
T ss_pred EEEEEeCCCcEEEEECccCCEEEEEECCCCC
Confidence 9999999999999999999999998855443
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.78 E-value=8.7e-17 Score=179.57 Aligned_cols=290 Identities=7% Similarity=-0.024 Sum_probs=199.2
Q ss_pred CCCCEEEEEEecCCCeEEEEE----eCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCC
Q 001184 346 QGSSVVSMDFHPFHHTLLVVG----CGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 421 (1130)
+..++.+++++|||++++++. +..+.|.+||..+++.+.. +..+.. ..++|||||
T Consensus 19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~~~~--~~~a~SpDG 77 (373)
T d2madh_ 19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFL--PNPVAAHSG 77 (373)
T ss_pred CCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE-------------------EeCCCC--ccEEEcCCC
Confidence 778999999999999865542 2346799999999988752 333332 369999999
Q ss_pred CEEEEEe----------CCCeEEEEEecCCccceeeeeeecCCCC-------eeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001184 422 NFIGVAF----------TKHLIHLYTYQGSNDLCQSLEIDAHVGG-------VNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1130)
Q Consensus 422 ~~las~~----------~d~~i~vwd~~~~~~~~~~~~~~~h~~~-------V~~i~~s~d~~~l~l~s~s~d~~v~iwd 484 (1130)
++|++++ .++.|.+||..+++.+. .+..+... ...+.|++|++.+++.....++.+.+|+
T Consensus 78 ~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~ 154 (373)
T d2madh_ 78 SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA---DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV 154 (373)
T ss_pred CEEEEEeecCCcccccccceEEEEEECCCCcEEE---EEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEee
Confidence 9999875 35789999999987654 23333332 2568999999975556667788999999
Q ss_pred -cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCC------CccEEEEEEecCCCeEE
Q 001184 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP------GLWCTTMLYSADGSRLF 557 (1130)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~ 557 (1130)
..++..... ....++.+++.+. ..+++.+.|+.+.+|+............. ......+.+.+++.+++
T Consensus 155 ~~~~~~~~~~----~~~~~~~~s~~g~-~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (373)
T d2madh_ 155 QGGSSDDQLL----SSPTCYHIHPGAP-STFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVW 229 (373)
T ss_pred ccCCeEEEEe----ccceeEEEecCCC-cEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEE
Confidence 555444333 3455667766543 46678899999999999877665543221 12344556666666555
Q ss_pred EeeecCCCCcEEEEeeCCCCceeEEE--eccc---------CceeEEEEEcCCCCEE----------EEEeCCCcEEEEe
Q 001184 558 SCGTSKEGDSHLVEWNESEGALKRTY--IGFR---------KKSAGVVQFDTTRNRI----------LAAGEDNQIKFWD 616 (1130)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~--~~~~---------~~~v~~~~~~~~~~~l----------~~~~~dg~i~vwd 616 (1130)
... ++.+.+|+..++...... .... ......+++++++..+ +....++.+.+||
T Consensus 230 ~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d 304 (373)
T d2madh_ 230 PVY-----SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVT 304 (373)
T ss_pred ecC-----CceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEE
Confidence 442 678888887766533221 1111 1122335566665544 4455677899999
Q ss_pred CCCCceeEEEeccCCCCCcceEEEcCCCCE--EEEEeCCCcEEEEEcCCCchhhhhhcc
Q 001184 617 MDNVNMLTSTEAEGGLPSLPRLRFNKEGNL--LVVTTADQGIKILANADGLRALRAIET 673 (1130)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~--l~~~~~dg~i~iw~~~~~~~~~~~~~~ 673 (1130)
..+++.+..+.... .+..++|+|||+. +++++.|+.|++||+.++ +..+.+..
T Consensus 305 ~~t~~~~~~~~~~~---~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg-~~~~~~~~ 359 (373)
T d2madh_ 305 GLVGQTSSQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG-DQDQSTVE 359 (373)
T ss_pred CCCCcEEEEecCCC---CeeEEEECCCCCEEEEEEeCCCCeEEEEECCCC-CEEEEECC
Confidence 99999988876543 5789999999984 467889999999999998 45555543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=4.1e-16 Score=170.82 Aligned_cols=208 Identities=11% Similarity=0.092 Sum_probs=140.6
Q ss_pred ceeEEEEecCCCEEEEEe--CCeEEEEECCCceeEEE--EeCCCCCeEEEEEeCCCCcEEEEEe-CCCcEEEEEeecCeE
Q 001184 835 VVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTT--FMSPPPASTFLAFHPQDNNIIAIGM-EDSTIQIYNVRVDEV 909 (1130)
Q Consensus 835 ~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~~~~~lasg~-~dg~v~iwd~~~~~~ 909 (1130)
.+..++|+|||++|++++ ++.|.+|+......... ...+...+.++.++| +++++++++ .+..|.+|+......
T Consensus 84 ~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-d~~~~~~~~~~~~~i~~~~~~~~~~ 162 (333)
T d1ri6a_ 84 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGH 162 (333)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred CceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeee-cceeeeccccccceeeEEEeccCCc
Confidence 345789999999888886 57788888776654433 345667788999999 666666665 456799999876532
Q ss_pred EEE------EecCCCCeeEEEEccCCCeEEEEe-CCCcEEEEECCCCcccceeeEec---cC-CCCCCCeEEEEEcCCCc
Q 001184 910 KTK------LKGHQKHITGLAFSTNLNILVSSG-SDAQLIFWNTDTWEKRKSIAIQL---PA-GKLPVGETRVQFHSDQV 978 (1130)
Q Consensus 910 ~~~------l~~h~~~V~~l~~s~dg~~L~s~s-~Dg~i~vwd~~~~~~~~~~~~~~---~~-~~~~~~v~~~~~s~d~~ 978 (1130)
... ...+......++|++++..++... ..+...+|+.............. +. .........+++++|++
T Consensus 163 ~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 242 (333)
T d1ri6a_ 163 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR 242 (333)
T ss_dssp EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSS
T ss_pred ceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccC
Confidence 211 123445568899999999887665 45678888876543322211111 11 11224567789999999
Q ss_pred EEEEE--cCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeC-CCcEEEE--eCCCccc
Q 001184 979 RLLVN--HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFT-DGSIGVF--DADSLRL 1043 (1130)
Q Consensus 979 ~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~-Dg~i~vw--d~~~~~~ 1043 (1130)
++++. .++.+.+|++..................+.+++|||||++|++++. ++.|+|| |.++|++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l 312 (333)
T d1ri6a_ 243 HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 312 (333)
T ss_dssp EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred ceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence 88874 4778999998765444433332222456788999999999887764 5889999 5566654
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=5.3e-16 Score=169.89 Aligned_cols=279 Identities=13% Similarity=0.164 Sum_probs=183.5
Q ss_pred eEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEe-CCCeEEEEEec
Q 001184 361 TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF-TKHLIHLYTYQ 439 (1130)
Q Consensus 361 ~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~-~d~~i~vwd~~ 439 (1130)
.++++++.|++|+||++++...+.. + -...|.+.|..++|||||++|++++ .|+.|++|++.
T Consensus 5 ~v~v~~~~~~~I~v~~~~~~~~l~~--~---------------~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~ 67 (333)
T d1ri6a_ 5 TVYIASPESQQIHVWNLNHEGALTL--T---------------QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEE--E---------------EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEECCCCCcEEEEEEcCCCCeEE--E---------------EEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEe
Confidence 3568888999999999976543221 0 1235778899999999999996554 58999999998
Q ss_pred CCccceeeeeeecCCCCeeEEEEecCCCceEEEEEc-CCCcEEEEe-cCCCee--eEecCCCcCEEEEeecccCCccEEE
Q 001184 440 GSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG-DDKLIRVWD-LSGRKL--FQFEGHEAPVYSVCPHQKENIHFIF 515 (1130)
Q Consensus 440 ~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s-~d~~v~iwd-~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~ 515 (1130)
.............+...+..++|+|||+ +|++++ .++.|.+|+ ...... .....+...+.++.+++ +++.++
T Consensus 68 ~~~~~~~~~~~~~~~~~p~~l~~spDg~--~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~--d~~~~~ 143 (333)
T d1ri6a_ 68 PDDGALTFAAESALPGSLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP--DNRTLW 143 (333)
T ss_dssp TTTCCEEEEEEEECSSCCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT--TSSEEE
T ss_pred CCCCcEEEeeecccCCCceEEEEcCCCC--EEeecccCCCceeeeccccccceecccccCCCccceEEEeee--cceeee
Confidence 7654432222334556688999999999 455554 578899998 433332 33345667778888865 446666
Q ss_pred EEe-cCCcEEEEEccCCcceee------ecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC--Ccee--EEEe
Q 001184 516 STA-VDGKIKAWLYDNVGSRVD------YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE--GALK--RTYI 584 (1130)
Q Consensus 516 s~s-~dg~i~vwd~~~~~~~~~------~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--~~~~--~~~~ 584 (1130)
.++ .+..+.+|+......... ..........++|++++..++.... ..+...+|+... .... ....
T Consensus 144 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~ 220 (333)
T d1ri6a_ 144 VPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIECVQTLD 220 (333)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEEEEEEE
T ss_pred ccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeecc---ccCceEEEeecccccceeeeeeee
Confidence 665 456799999876544331 2233446788999999999887653 245556665433 2221 1221
Q ss_pred cc-----cCceeEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCceeEEEec-cCCCCCcceEEEcCCCCEEEEEe-CCCcE
Q 001184 585 GF-----RKKSAGVVQFDTTRNRILAA-GEDNQIKFWDMDNVNMLTSTEA-EGGLPSLPRLRFNKEGNLLVVTT-ADQGI 656 (1130)
Q Consensus 585 ~~-----~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~-~~~~~~i~~v~~s~~~~~l~~~~-~dg~i 656 (1130)
.. .......+++++++++++.. ..++.+.+|++........... ......+..++|+|||++|++++ .++.|
T Consensus 221 ~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v 300 (333)
T d1ri6a_ 221 MMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHI 300 (333)
T ss_dssp CSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEE
T ss_pred eeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeE
Confidence 11 11234567899999977665 4678899998876543322221 12222568899999999988775 46889
Q ss_pred EEEEcCC
Q 001184 657 KILANAD 663 (1130)
Q Consensus 657 ~iw~~~~ 663 (1130)
++|+++.
T Consensus 301 ~v~~id~ 307 (333)
T d1ri6a_ 301 SVYEIVG 307 (333)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9996643
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.73 E-value=1e-16 Score=177.55 Aligned_cols=288 Identities=13% Similarity=0.081 Sum_probs=190.3
Q ss_pred EEEEEecCCCeEEEEE----eCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEE
Q 001184 351 VSMDFHPFHHTLLVVG----CGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1130)
Q Consensus 351 ~~v~fspdg~~llasg----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 426 (1130)
.-.+.+|||++++++. ..++.|.+||..+++.+.. +..+ .+..++|||||++|++
T Consensus 5 ~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~g--~~~~~a~SpDg~~l~v 63 (355)
T d2bbkh_ 5 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-------------------IDGG--FLPNPVVADDGSFIAH 63 (355)
T ss_dssp BCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-------------------EEEC--SSCEEEECTTSSCEEE
T ss_pred EeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEE-------------------EECC--CCCceEEcCCCCEEEE
Confidence 3346689999755543 2355799999999988752 2233 2337999999998876
Q ss_pred Ee----------CCCeEEEEEecCCccceeeeeeecC----CCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeee
Q 001184 427 AF----------TKHLIHLYTYQGSNDLCQSLEIDAH----VGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLF 491 (1130)
Q Consensus 427 ~~----------~d~~i~vwd~~~~~~~~~~~~~~~h----~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~ 491 (1130)
.+ .|+.|++||..+++..........+ ......++|+++++.++++..+.+..+.+|| .+++.+.
T Consensus 64 ~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~ 143 (355)
T d2bbkh_ 64 ASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKR 143 (355)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred EeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEee
Confidence 53 4789999999998765533221112 2234678999999965555556788999999 7888777
Q ss_pred EecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeec------CCCccEEEEEEecCCCeEEEeeecCCC
Q 001184 492 QFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD------APGLWCTTMLYSADGSRLFSCGTSKEG 565 (1130)
Q Consensus 492 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1130)
.+..+....... .. ....++.+.|+....+............ .+...+....+.+++..++.++.
T Consensus 144 ~~~~~~~~~~~~----~~-~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 214 (355)
T d2bbkh_ 144 MLDVPDCYHIFP----TA-PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY---- 214 (355)
T ss_dssp EEECCSEEEEEE----EE-TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT----
T ss_pred EEecCCcceEee----cC-CcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecC----
Confidence 776544322111 11 1234455566665555544333222111 12223555678888888888764
Q ss_pred CcEEEEeeCCCCceeE--EEecccC---------ceeEEEEEcCCCCEEEEEeCC----------CcEEEEeCCCCceeE
Q 001184 566 DSHLVEWNESEGALKR--TYIGFRK---------KSAGVVQFDTTRNRILAAGED----------NQIKFWDMDNVNMLT 624 (1130)
Q Consensus 566 ~~~i~~wd~~~~~~~~--~~~~~~~---------~~v~~~~~~~~~~~l~~~~~d----------g~i~vwd~~~~~~~~ 624 (1130)
++.+++|+...+.... ....+.. .....+++++++..++....+ ..|.+||..+++.+.
T Consensus 215 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~ 294 (355)
T d2bbkh_ 215 TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA 294 (355)
T ss_dssp TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE
T ss_pred CCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEE
Confidence 8899999988775422 2221110 122347899999988776543 369999999999988
Q ss_pred EEeccCCCCCcceEEEcCCCC--EEEEEeCCCcEEEEEcCCCchhhhhhc
Q 001184 625 STEAEGGLPSLPRLRFNKEGN--LLVVTTADQGIKILANADGLRALRAIE 672 (1130)
Q Consensus 625 ~~~~~~~~~~i~~v~~s~~~~--~l~~~~~dg~i~iw~~~~~~~~~~~~~ 672 (1130)
.+.... .+.+++|+|||+ ++++++.|+.|++||..++ +.++.+.
T Consensus 295 ~~~~~~---~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg-~~~~~i~ 340 (355)
T d2bbkh_ 295 KFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESG-EELRSVN 340 (355)
T ss_dssp EEEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEEEC
T ss_pred EecCCC---CEEEEEEcCCCCeEEEEEECCCCEEEEEECCCC-CEEEEEe
Confidence 877543 478999999997 4566777999999999998 4444444
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.73 E-value=1.8e-16 Score=175.50 Aligned_cols=202 Identities=15% Similarity=0.116 Sum_probs=139.0
Q ss_pred eEEEEecCCCEEEEEe---CCeEEEEECCCceeEEEEeCCCC-------CeEEEEEeCCCCcEEE-EEeCCCcEEEEEee
Q 001184 837 PCVALSKNDSYVMSAG---GGKVSLFNMMNFKVMTTFMSPPP-------ASTFLAFHPQDNNIIA-IGMEDSTIQIYNVR 905 (1130)
Q Consensus 837 ~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~-------~i~~l~~sp~~~~~la-sg~~dg~v~iwd~~ 905 (1130)
..++|++||++++++. +..+.+|+..+++.+..+..+.. ....+.+++ ++..++ ....++.+.+++..
T Consensus 109 ~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-dg~~~~v~~~~~~~~~~~~~~ 187 (355)
T d2bbkh_ 109 WMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCR-DGSLAKVAFGTEGTPEITHTE 187 (355)
T ss_dssp GGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEET-TSCEEEEECCSSSCCEEEECC
T ss_pred ceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcC-CCCEEEEEecCCCeEEEEecc
Confidence 4578889998887765 46799999999988888765432 223345555 333333 23333444444443
Q ss_pred cCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEecc------CCCCCCCeEEEEEcCCCcE
Q 001184 906 VDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLP------AGKLPVGETRVQFHSDQVR 979 (1130)
Q Consensus 906 ~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~------~~~~~~~v~~~~~s~d~~~ 979 (1130)
+.. ..+...+....+++++..++.++.++.+++|++..++.......... ....+.....+++++++..
T Consensus 188 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~ 262 (355)
T d2bbkh_ 188 VFH-----PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR 262 (355)
T ss_dssp CCS-----CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTE
T ss_pred ccc-----ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCe
Confidence 322 23445566778899999999999999999999998654322111100 0011133456899999998
Q ss_pred EEEE-c----------CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCC--EEEEEeCCCcEEEEeCCCcccccc
Q 001184 980 LLVN-H----------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQ--LIYATFTDGSIGVFDADSLRLRCR 1046 (1130)
Q Consensus 980 l~~~-~----------d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~--~l~t~~~Dg~i~vwd~~~~~~~~~ 1046 (1130)
++.. . .+.+.+||..+++.+..+... ..+.+++|+|||+ ++++++.|+.|+|||+++++.+..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~----~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~ 338 (355)
T d2bbkh_ 263 IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG----HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS 338 (355)
T ss_dssp EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE----EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred EEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCC----CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEE
Confidence 8762 1 146999999999998887654 4688999999998 455667799999999999999888
Q ss_pred cC
Q 001184 1047 IA 1048 (1130)
Q Consensus 1047 ~~ 1048 (1130)
+.
T Consensus 339 i~ 340 (355)
T d2bbkh_ 339 VN 340 (355)
T ss_dssp EC
T ss_pred Ee
Confidence 75
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.55 E-value=6.9e-13 Score=152.40 Aligned_cols=217 Identities=12% Similarity=0.044 Sum_probs=135.7
Q ss_pred EEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeC--
Q 001184 352 SMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFT-- 429 (1130)
Q Consensus 352 ~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~-- 429 (1130)
.+.|.+|++ ++. ..|+.|.+||+.+++.... . ....+..|...|.++.|||||++||+++.
T Consensus 21 ~~~W~~d~~-~~~--~~~~~~~~~~~~t~~~~~~-----~---------~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~ 83 (470)
T d2bgra1 21 SLRWISDHE-YLY--KQENNILVFNAEYGNSSVF-----L---------ENSTFDEFGHSINDYSISPDGQFILLEYNYV 83 (470)
T ss_dssp CCEECSSSE-EEE--ESSSCEEEEETTTCCEEEE-----E---------CTTTTTTSSSCCCEEEECTTSSEEEEEEEEE
T ss_pred CCEeCCCCE-EEE--EcCCcEEEEECCCCCEEEE-----E---------chhhhhhccCccceeEECCCCCEEEEEECCc
Confidence 467899997 455 3578999999999986531 0 11135677889999999999999998853
Q ss_pred -------CCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCC-----
Q 001184 430 -------KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGH----- 496 (1130)
Q Consensus 430 -------d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h----- 496 (1130)
++.+.+||+++++.. .+..|...+..+.|||||+ .++.. .++.+.+|+ ..+........+
T Consensus 84 ~~~r~s~~~~~~l~d~~~~~~~----~l~~~~~~~~~~~~SPDG~--~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~ 156 (470)
T d2bgra1 84 KQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDII 156 (470)
T ss_dssp ECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTE
T ss_pred ceeeeccCceEEEEECCCCccc----ccccCCccccccccccCcc--eeeEe-ecccceEEECCCCceeeeeeccCCCcc
Confidence 467899999997643 4678899999999999999 45654 467899999 556554433221
Q ss_pred -------------CcCEEEEeecccCCccEEEEEecCCc-EEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeec
Q 001184 497 -------------EAPVYSVCPHQKENIHFIFSTAVDGK-IKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 497 -------------~~~v~~~~~~~~~~~~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
.+....+.| ++||+.|+....|.+ +..|.+...... .........+.+...+..
T Consensus 157 ~~g~~d~~~~~~~~~~~~~~~w--SPDGk~ia~~~~d~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~------- 224 (470)
T d2bgra1 157 YNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDE---SLQYPKTVRVPYPKAGAV------- 224 (470)
T ss_dssp EESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCST---TCSSCEEEEEECCBTTSC-------
T ss_pred cccccceeeeeeecCCccccEE--CCCCCccceeEecCCcCceEEEEeeccC---CCCCCeeeeecccccccc-------
Confidence 122334556 456788888876544 555544211110 001112223333222221
Q ss_pred CCCCcEEEEeeCCCCceeEEEec----------ccCceeEEEEEcCCCCEEEE
Q 001184 563 KEGDSHLVEWNESEGALKRTYIG----------FRKKSAGVVQFDTTRNRILA 605 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~ 605 (1130)
.....+.+|++.++........ ..+..+..+.|.+++..++.
T Consensus 225 -~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 276 (470)
T d2bgra1 225 -NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQ 276 (470)
T ss_dssp -CCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEE
T ss_pred -CCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEE
Confidence 1245688888876654322211 11224556788888875554
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.53 E-value=7.8e-14 Score=154.66 Aligned_cols=281 Identities=7% Similarity=-0.047 Sum_probs=184.2
Q ss_pred CCCCEEEEEEecCCCeEEEE--EeCcC--eEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCC
Q 001184 346 QGSSVVSMDFHPFHHTLLVV--GCGDG--EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llas--g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 421 (1130)
+.+....++.+++++...++ ...+| .|.+||..+++.+.. ..++... .++|+|||
T Consensus 18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~-------------------~~~~~~~--~~a~spDg 76 (368)
T d1mdah_ 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGH-------------------SLGAFLS--LAVAGHSG 76 (368)
T ss_dssp CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECTTC--EEEECTTS
T ss_pred cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEE-------------------EeCCCCC--cceECCCC
Confidence 44455566678888753333 33444 477779999887752 3334333 58999999
Q ss_pred CEEEEEe----------CCCeEEEEEecCCccceeeeeeecCC-------CCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001184 422 NFIGVAF----------TKHLIHLYTYQGSNDLCQSLEIDAHV-------GGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1130)
Q Consensus 422 ~~las~~----------~d~~i~vwd~~~~~~~~~~~~~~~h~-------~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd 484 (1130)
++|++.+ .|+.|.+||..+++.+.. +..+. .....++|+|||++ ++++...++.+.+||
T Consensus 77 ~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~---i~~p~~~~~~~g~~p~~~a~SpDGk~-l~va~~~~~~v~~~d 152 (368)
T d1mdah_ 77 SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD---IELPDAPRFSVGPRVHIIGNCASSAC-LLFFLFGSSAAAGLS 152 (368)
T ss_dssp SCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE---EEETTSCSCCBSCCTTSEEECTTSSC-EEEEECSSSCEEEEE
T ss_pred CEEEEEcccCccccccccCCeEEEEECCCCcEeee---ecCCccceecccCCccceEECCCCCE-EEEEeCCCCeEEEEE
Confidence 9998764 367899999999876543 22221 22356899999995 344445689999999
Q ss_pred -cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeee------cCCCccEEEEEEecCCCeEE
Q 001184 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY------DAPGLWCTTMLYSADGSRLF 557 (1130)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~ 557 (1130)
.+++.+..+..+..... .+.+ ...++..+.||.+.+|++......... ..+...+..+.+.+++..+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~----~~~~-~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (368)
T d1mdah_ 153 VPGASDDQLTKSASCFHI----HPGA-AATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW 227 (368)
T ss_dssp ETTTEEEEEEECSSCCCC----EEEE-TTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEE
T ss_pred CCCCcEeEEeeccCcceE----ccCC-CceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEE
Confidence 88888887766544322 1122 246777788999998988765544322 22233455677778877666
Q ss_pred EeeecCCCCcEEEEeeCCCCceeEEEe--ccc---------CceeEEEEEcCCCCEEEEEeCC---------CcEEEEeC
Q 001184 558 SCGTSKEGDSHLVEWNESEGALKRTYI--GFR---------KKSAGVVQFDTTRNRILAAGED---------NQIKFWDM 617 (1130)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~--~~~---------~~~v~~~~~~~~~~~l~~~~~d---------g~i~vwd~ 617 (1130)
.. .+.+++++...+....... ... ......++++++++.++....+ ..|.+||.
T Consensus 228 ~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~ 301 (368)
T d1mdah_ 228 AV------ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTA 301 (368)
T ss_dssp CB------SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEES
T ss_pred ec------CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEEC
Confidence 54 3456666655444332211 100 0112347889998877665322 35999999
Q ss_pred CCCceeEEEeccCCCCCcceEEEcCCCC-E-EEEEeCCCcEEEEEcCCCc
Q 001184 618 DNVNMLTSTEAEGGLPSLPRLRFNKEGN-L-LVVTTADQGIKILANADGL 665 (1130)
Q Consensus 618 ~~~~~~~~~~~~~~~~~i~~v~~s~~~~-~-l~~~~~dg~i~iw~~~~~~ 665 (1130)
.+++.+..+.... .+..++|+|||+ + ++++..++.|++||..+++
T Consensus 302 ~t~~~~~~~~~~~---~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk 348 (368)
T d1mdah_ 302 SVGQTSGPISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp SSCCEEECCEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred CCCcEeEEecCCC---ceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence 9999888776543 578899999997 3 4566778999999999883
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.51 E-value=6.8e-13 Score=152.42 Aligned_cols=371 Identities=10% Similarity=0.036 Sum_probs=209.1
Q ss_pred EEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEeccc----CceeEEEEEcCCCCEEEEEeC---------CCcE
Q 001184 546 TMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR----KKSAGVVQFDTTRNRILAAGE---------DNQI 612 (1130)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~---------dg~i 612 (1130)
.+.|.+++.++... ++.+.+||..+++....+..+. ...+.++.|+|||++|+.++. ++.+
T Consensus 21 ~~~W~~d~~~~~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~ 94 (470)
T d2bgra1 21 SLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (470)
T ss_dssp CCEECSSSEEEEES------SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred CCEeCCCCEEEEEc------CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceE
Confidence 57788999877643 6779999999999877666542 236889999999999998753 5678
Q ss_pred EEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccce
Q 001184 613 KFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAV 692 (1130)
Q Consensus 613 ~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1130)
++||+.+++... +.. +...+..+.|||||+.+|.. .++.+.+|+..++........+.....
T Consensus 95 ~l~d~~~~~~~~-l~~--~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~-------------- 156 (470)
T d2bgra1 95 DIYDLNKRQLIT-EER--IPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDII-------------- 156 (470)
T ss_dssp EEEETTTTEECC-SSC--CCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTE--------------
T ss_pred EEEECCCCcccc-ccc--CCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcc--------------
Confidence 999999987543 332 33468899999999999986 467899999877732211111100000
Q ss_pred eeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEE
Q 001184 693 VTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVAR 772 (1130)
Q Consensus 693 ~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 772 (1130)
..+..| |... ....+....
T Consensus 157 ----------------------------------------~~g~~d-----~~~~----------------~~~~~~~~~ 175 (470)
T d2bgra1 157 ----------------------------------------YNGITD-----WVYE----------------EEVFSAYSA 175 (470)
T ss_dssp ----------------------------------------EESBCC-----HHHH----------------HHTSSSSBC
T ss_pred ----------------------------------------cccccc-----eeee----------------eeecCCccc
Confidence 000000 0000 002233345
Q ss_pred EEEeccCCeEEEeeeCCe-EEeeecCCCCC-------------CCCcccccccccccccCCCCcceeccCC---------
Q 001184 773 LLYTNSGIGILALWSNGV-QKLWKWNRTEQ-------------NPSGKATAAVAPQHWQPSNGLLMTNDVP--------- 829 (1130)
Q Consensus 773 l~~s~~g~~l~~~~~dg~-i~iw~~~~~~~-------------~~~~~~~~~~~~~~w~~~~~~~~~~~~~--------- 829 (1130)
+.|+|||+.|+....|.. +..|.+..... ...+.......+.+|+..++........
T Consensus 176 ~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 255 (470)
T d2bgra1 176 LWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASM 255 (470)
T ss_dssp EEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHH
T ss_pred cEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCcccc
Confidence 677888888777765432 44333321100 1111112222345566555443221110
Q ss_pred CCCCCceeEEEEecCCCEEEEEe--C-C--eEEE--EECCCceeEEEEe------CCCCC-----eEEEEEeCC-CCcEE
Q 001184 830 ENAEDVVPCVALSKNDSYVMSAG--G-G--KVSL--FNMMNFKVMTTFM------SPPPA-----STFLAFHPQ-DNNII 890 (1130)
Q Consensus 830 ~~~~~~i~~l~~s~dg~~la~~~--d-g--~i~i--wd~~~~~~~~~~~------~~~~~-----i~~l~~sp~-~~~~l 890 (1130)
......+..+.|.++++.++... . + .+.+ +|..++....... ..... -....+.++ ++.++
T Consensus 256 ~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 335 (470)
T d2bgra1 256 LIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYK 335 (470)
T ss_dssp HTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEE
T ss_pred CCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEE
Confidence 02234567788999988776643 1 2 2344 4555555433211 01110 112234442 34456
Q ss_pred EEEeCCCcEEEEEee-cCeEEEEEecCCCCeeEEEEccCCCeE-EEEeCCC----cEEEEEC--CCCcccceeeEeccCC
Q 001184 891 AIGMEDSTIQIYNVR-VDEVKTKLKGHQKHITGLAFSTNLNIL-VSSGSDA----QLIFWNT--DTWEKRKSIAIQLPAG 962 (1130)
Q Consensus 891 asg~~dg~v~iwd~~-~~~~~~~l~~h~~~V~~l~~s~dg~~L-~s~s~Dg----~i~vwd~--~~~~~~~~~~~~~~~~ 962 (1130)
..+..||..+||... .+.....+..+...|..+ +++|++.+ ++++.++ .-.||.+ ..+.. ...+.....
T Consensus 336 ~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~--~~~lt~~~~ 412 (470)
T d2bgra1 336 IISNEEGYRHICYFQIDKKDCTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTK--VTCLSCELN 412 (470)
T ss_dssp EEECTTSCEEEEEEETTCSCCEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTC--EEESSTTTS
T ss_pred EEeccCcCceeEEEeccCCceeeeccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCc--eeEeccccc
Confidence 677788877776554 233344555555667776 44455554 4444332 2235544 43222 122222222
Q ss_pred CCCCCeEEEEEcCCCcEEEEEc----CCcEEEEECCCceeeeeeec
Q 001184 963 KLPVGETRVQFHSDQVRLLVNH----ETQLAIYDGSKMECIRQWVP 1004 (1130)
Q Consensus 963 ~~~~~v~~~~~s~d~~~l~~~~----d~~i~v~d~~~~~~~~~~~~ 1004 (1130)
.+...+..++|||||++++... .-.+.+|+..+++.++.+..
T Consensus 413 ~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le~ 458 (470)
T d2bgra1 413 PERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLED 458 (470)
T ss_dssp TTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEEC
T ss_pred CCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECCCCCEEEEEec
Confidence 3346788999999999988632 33588999999999888754
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.45 E-value=1.8e-12 Score=143.37 Aligned_cols=244 Identities=9% Similarity=-0.024 Sum_probs=160.8
Q ss_pred EEEEecCCCEEEEEe-----------CCeEEEEECCCceeEEEEeCCCC-------CeEEEEEeCCCCcEEEEEe-CCCc
Q 001184 838 CVALSKNDSYVMSAG-----------GGKVSLFNMMNFKVMTTFMSPPP-------ASTFLAFHPQDNNIIAIGM-EDST 898 (1130)
Q Consensus 838 ~l~~s~dg~~la~~~-----------dg~i~iwd~~~~~~~~~~~~~~~-------~i~~l~~sp~~~~~lasg~-~dg~ 898 (1130)
.++++|||+.|++.+ ++.|++||..+++.+..+..+.. ....++|+| |+++|+++. .++.
T Consensus 69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~Sp-DGk~l~va~~~~~~ 147 (368)
T d1mdah_ 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA-SSACLLFFLFGSSA 147 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT-TSSCEEEEECSSSC
T ss_pred cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECC-CCCEEEEEeCCCCe
Confidence 589999999998754 45699999999999988765432 234689999 777776665 6799
Q ss_pred EEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCc
Q 001184 899 IQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV 978 (1130)
Q Consensus 899 v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 978 (1130)
+.+||+.+++.+..+..+..... +......++..+.||.+.+|++..........................+.+++.
T Consensus 148 v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 224 (368)
T d1mdah_ 148 AAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGM 224 (368)
T ss_dssp EEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTE
T ss_pred EEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcE
Confidence 99999999999988876654321 112234566667788888888776544332222111122223445667777776
Q ss_pred EEEEEcCCcEEEEECCCceeeeeeecCC---------CCCCCeEEEEECCCCCEEEEEeCC---------CcEEEEeCCC
Q 001184 979 RLLVNHETQLAIYDGSKMECIRQWVPQD---------VLSSPISSAAYSCNSQLIYATFTD---------GSIGVFDADS 1040 (1130)
Q Consensus 979 ~l~~~~d~~i~v~d~~~~~~~~~~~~~~---------~~~~~v~~v~~s~dg~~l~t~~~D---------g~i~vwd~~~ 1040 (1130)
.+. ...+.+.+++...+.......... ........+++++++..++....+ ..|.+||..+
T Consensus 225 ~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t 303 (368)
T d1mdah_ 225 LVW-AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV 303 (368)
T ss_dssp EEE-CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS
T ss_pred EEE-ecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCC
Confidence 554 345566677766544332211100 001223457899999977766432 3599999999
Q ss_pred cccccccCCCcccccCCCCCceeeeEEEEEcCCCCC-EEEEEeCCCcEEEEeCCCCccC
Q 001184 1041 LRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPN-QLAVGLTDGSVKVIEPSETERK 1098 (1130)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~Dg~v~vW~~~~~~~~ 1098 (1130)
++.+..+.. ...+..+.|+|+... +++++..|+.|.+||..+++..
T Consensus 304 ~~~~~~~~~------------~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~ 350 (368)
T d1mdah_ 304 GQTSGPISN------------GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp CCEEECCEE------------EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred CcEeEEecC------------CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence 998776641 123456889995333 4577778999999999998853
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.45 E-value=1.2e-12 Score=142.28 Aligned_cols=297 Identities=12% Similarity=0.069 Sum_probs=187.0
Q ss_pred EEEEecCCcEEEEEccCCcceeeecC------------------------------CCccEEEEEEecCCCeEEEeeecC
Q 001184 514 IFSTAVDGKIKAWLYDNVGSRVDYDA------------------------------PGLWCTTMLYSADGSRLFSCGTSK 563 (1130)
Q Consensus 514 l~s~s~dg~i~vwd~~~~~~~~~~~~------------------------------~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1130)
++|++.+|.|++|++.+.+....+.. |........++|||++|++...
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~-- 91 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDK-- 91 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEET--
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcC--
Confidence 56777888888888877665544321 1122344556799999988753
Q ss_pred CCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCC--EEEEEeCCC-----------------cEEEEeCCCCceeE
Q 001184 564 EGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN--RILAAGEDN-----------------QIKFWDMDNVNMLT 624 (1130)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg-----------------~i~vwd~~~~~~~~ 624 (1130)
.+.+|.++|+.+++..+.+.-........++|+|+++ +++..+++. .+..+|..+.+...
T Consensus 92 -~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~ 170 (441)
T d1qnia2 92 -ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAW 170 (441)
T ss_dssp -TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEE
T ss_pred -CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeE
Confidence 4789999999999998877654555788899999998 444444332 24568888888887
Q ss_pred EEeccCCCCCcceEEEcCCCCEEEEEeCCCc-EEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccc
Q 001184 625 STEAEGGLPSLPRLRFNKEGNLLVVTTADQG-IKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKA 703 (1130)
Q Consensus 625 ~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 703 (1130)
.+...+ ....++++|+|+++++++.+.. +..++..+. ...
T Consensus 171 qI~v~~---~p~~v~~spdGk~a~vt~~nse~~~~id~~t~-~~~----------------------------------- 211 (441)
T d1qnia2 171 QVIVDG---NLDNTDADYTGKYATSTCYNSERAVDLAGTMR-NDR----------------------------------- 211 (441)
T ss_dssp EEEESS---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTC-SSB-----------------------------------
T ss_pred EEecCC---CccceEECCCCCEEEEEecCCCceEEEeccCc-ceE-----------------------------------
Confidence 777654 4688999999999998876532 111111110 000
Q ss_pred cccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEE
Q 001184 704 ERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGIL 783 (1130)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~ 783 (1130)
..+.+.+. -..+.++++|+++.
T Consensus 212 -----------------------------------d~i~v~n~-----------------------p~~~~~~~dGk~~~ 233 (441)
T d1qnia2 212 -----------------------------------DWVVVFNV-----------------------ERIAAAVKAGNFKT 233 (441)
T ss_dssp -----------------------------------CEEEEEEH-----------------------HHHHHHHHTTCCBC
T ss_pred -----------------------------------EEEEeCCc-----------------------cceEEEecCCCEEE
Confidence 00000000 01123445555443
Q ss_pred EeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe--CCeEEEEEC
Q 001184 784 ALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNM 861 (1130)
Q Consensus 784 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~iwd~ 861 (1130)
. +.++.+.++... ....+. .++. ......+.++|||+++++++ +++|.+||+
T Consensus 234 v-~~~~v~vvd~~~----------------------~~~v~~-~IPv--gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~ 287 (441)
T d1qnia2 234 I-GDSKVPVVDGRG----------------------ESEFTR-YIPV--PKNPHGLNTSPDGKYFIANGKLSPTVSVIAI 287 (441)
T ss_dssp C-TTCCCCEEECSS----------------------SCSSEE-EECC--BSSCCCEEECTTSCEEEEECTTSSBEEEEEG
T ss_pred e-CCCCcEEEEccc----------------------CCceEE-EEeC--CCCccCceECCCCCEEEEeCCcCCcEEEEEe
Confidence 3 223444444221 111111 0111 23356799999999998876 799999998
Q ss_pred CCceeE--------EEEeC---CCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeec----------CeEEEEE-----ec
Q 001184 862 MNFKVM--------TTFMS---PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV----------DEVKTKL-----KG 915 (1130)
Q Consensus 862 ~~~~~~--------~~~~~---~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~----------~~~~~~l-----~~ 915 (1130)
.+.+.. ..+.+ ..-.....+|.+ ++..+.+...|..|..|++.. ...+..+ .|
T Consensus 288 ~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~-~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~G 366 (441)
T d1qnia2 288 DKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDG-RGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPG 366 (441)
T ss_dssp GGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEE
T ss_pred ehhhhHhhccCCcceEEEeecccccCcccceecC-CceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCC
Confidence 753211 11111 112245568999 788889999999999999852 2345555 47
Q ss_pred CCCCeeEEEEccCCCeEEEEeC
Q 001184 916 HQKHITGLAFSTNLNILVSSGS 937 (1130)
Q Consensus 916 h~~~V~~l~~s~dg~~L~s~s~ 937 (1130)
|...+.+.+++|||++|++++.
T Consensus 367 H~~~~~~~t~~pdGk~l~s~~k 388 (441)
T d1qnia2 367 HNHASLTESRDADGKWLVVLSK 388 (441)
T ss_dssp EEEETTTTSTTCCCCEEEEEES
T ss_pred CCccccccccCCCCcEEEecCc
Confidence 7777777889999999999954
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.35 E-value=2.5e-12 Score=139.82 Aligned_cols=246 Identities=10% Similarity=-0.024 Sum_probs=166.8
Q ss_pred CCCceeEEEEecCCCEEEEEe--CCeEEEEECCCceeEEEEeC-CCCCeEEEEEeCCCCc--EEEEEeCCC---------
Q 001184 832 AEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMS-PPPASTFLAFHPQDNN--IIAIGMEDS--------- 897 (1130)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~sp~~~~--~lasg~~dg--------- 897 (1130)
|.........+|||++|.+.. +++|.++|+.++++...+.. +...+..++|+| +++ +++..+.+.
T Consensus 70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~sp-dg~t~YV~~~~~~~v~~~~dg~~ 148 (441)
T d1qnia2 70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQK-VPKTNYVFCNAEFVIPQPNDGTD 148 (441)
T ss_dssp CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECC-SSBCCEEEEEECSCEESSCSSSC
T ss_pred cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEec-cCCEEEEEeccCCcccccCcccc
Confidence 455566677789999998876 68899999999999888764 467799999999 565 444444332
Q ss_pred --------cEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCC-cEEEEECCCCcccceeeEeccCCCCCCCe
Q 001184 898 --------TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDA-QLIFWNTDTWEKRKSIAIQLPAGKLPVGE 968 (1130)
Q Consensus 898 --------~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~v 968 (1130)
.+..+|..+.+...++... +....++|+|||+++++.+.+. .+..++..+.......... ...
T Consensus 149 ~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~-------n~p 220 (441)
T d1qnia2 149 FSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVF-------NVE 220 (441)
T ss_dssp CCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEE-------EHH
T ss_pred cccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeC-------Ccc
Confidence 2345777777777776644 3578899999999999888764 3333333333222111111 112
Q ss_pred EEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEE-eCCCcEEEEeCCCcccccc-
Q 001184 969 TRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYAT-FTDGSIGVFDADSLRLRCR- 1046 (1130)
Q Consensus 969 ~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~-~~Dg~i~vwd~~~~~~~~~- 1046 (1130)
..+.++++|+++.++.++.+.+++....+.+..+... .....+.+||||++++++ ..+++|.|||+++.+....
T Consensus 221 ~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvg----ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~ 296 (441)
T d1qnia2 221 RIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVP----KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFED 296 (441)
T ss_dssp HHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCB----SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTT
T ss_pred ceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCC----CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhc
Confidence 2345678999988888888888888877777776655 345689999999987665 5789999999986443211
Q ss_pred -cCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 001184 1047 -IAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1093 (1130)
Q Consensus 1047 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~ 1093 (1130)
+.....+... ......++...|.+ +++.+.+...|..|..|++.
T Consensus 297 ~~~~~~~~~~~--~~~glgplh~~fd~-~g~~yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 297 KIELRDTIVAE--PELGLGPLHTTFDG-RGNAYTTLFIDSQVCKWNIA 341 (441)
T ss_dssp SSCGGGGEEEC--CBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEHH
T ss_pred cCCcceEEEee--cccccCcccceecC-CceEEEcccccceEEEeccc
Confidence 1100000000 11123356678888 58889999999999999985
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.22 E-value=8.5e-09 Score=112.27 Aligned_cols=163 Identities=13% Similarity=0.115 Sum_probs=104.0
Q ss_pred CCceeEEEEecCCCEEEEEe--CCeEEEEECCCc-eeE--EEEe--CCCCCeEEEEEeCCCCcEE-EEEeCCCcEEEEEe
Q 001184 833 EDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNF-KVM--TTFM--SPPPASTFLAFHPQDNNII-AIGMEDSTIQIYNV 904 (1130)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~-~~~--~~~~--~~~~~i~~l~~sp~~~~~l-asg~~dg~v~iwd~ 904 (1130)
...+.+++|+|||+++++++ .+.|.+|+.... ... .... ........++|+| +++++ ++...+++|.+|++
T Consensus 144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~ 222 (365)
T d1jofa_ 144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVI 222 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred CCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEe
Confidence 34578999999999998887 467888876432 222 2222 2346789999999 66666 44556789999999
Q ss_pred ecCeEE--E---EEe--------------cCCCCeeEEEEccCCCeEEEEeC-C-----CcEEEEECCCCcccceeeEec
Q 001184 905 RVDEVK--T---KLK--------------GHQKHITGLAFSTNLNILVSSGS-D-----AQLIFWNTDTWEKRKSIAIQL 959 (1130)
Q Consensus 905 ~~~~~~--~---~l~--------------~h~~~V~~l~~s~dg~~L~s~s~-D-----g~i~vwd~~~~~~~~~~~~~~ 959 (1130)
..++.. . .+. .+......+.++|||++|+++.. + +.|..|++.............
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~ 302 (365)
T d1jofa_ 223 DPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS 302 (365)
T ss_dssp CTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE
T ss_pred cCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEee
Confidence 765322 1 111 11123457899999999988753 2 237777776533322221111
Q ss_pred cCCCCCCCeEEEEEcC-CCcEEEEE--cCCcEEEEECCCc
Q 001184 960 PAGKLPVGETRVQFHS-DQVRLLVN--HETQLAIYDGSKM 996 (1130)
Q Consensus 960 ~~~~~~~~v~~~~~s~-d~~~l~~~--~d~~i~v~d~~~~ 996 (1130)
...........++++| +|++|+++ .++.|.+|++...
T Consensus 303 ~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 303 PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 1111123456789998 89988875 5789999987644
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=3.7e-08 Score=110.50 Aligned_cols=385 Identities=9% Similarity=0.025 Sum_probs=209.6
Q ss_pred EEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccC--ceeEEEEEcCCCCEEEEEe---------CCCcEEEEe
Q 001184 548 LYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRK--KSAGVVQFDTTRNRILAAG---------EDNQIKFWD 616 (1130)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~---------~dg~i~vwd 616 (1130)
.|.+++.++... .++.|.+||..+++....+....- ..+....|+||+++++... ..+.+.++|
T Consensus 23 ~W~~~~~~~~~~-----~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d 97 (465)
T d1xfda1 23 KWISDTEFIYRE-----QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (465)
T ss_dssp CBSSSSCBCCCC-----SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred EEeCCCcEEEEe-----CCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEE
Confidence 477777766432 367899999998876544443321 2455678999999988764 356789999
Q ss_pred CCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeecc
Q 001184 617 MDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTI 696 (1130)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1130)
+.+++.............+....|||||+.+|... ++.|.+.+...+.....+..+....
T Consensus 98 ~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~------------------- 157 (465)
T d1xfda1 98 IPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGV------------------- 157 (465)
T ss_dssp SSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTT-------------------
T ss_pred ccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcce-------------------
Confidence 99887655444433444567789999999998875 5677777765542111100000000
Q ss_pred ccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEe
Q 001184 697 TPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYT 776 (1130)
Q Consensus 697 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 776 (1130)
+.-| +.-|-... .....-.++.||
T Consensus 158 -----------------------------------i~nG-----~~d~vyee----------------e~~~~~~a~~WS 181 (465)
T d1xfda1 158 -----------------------------------IYNG-----LSDWLYEE----------------EILKTHIAHWWS 181 (465)
T ss_dssp -----------------------------------EEEE-----ECCHHHHH----------------TTSSSSEEEEEC
T ss_pred -----------------------------------eecc-----ccchhhhh----------------hhccccceEEEC
Confidence 0000 00011110 011222568899
Q ss_pred ccCCeEEEeee-CCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCe
Q 001184 777 NSGIGILALWS-NGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGK 855 (1130)
Q Consensus 777 ~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~ 855 (1130)
|||+.|+...- +..+..+.+..... .....+..+.+..-|..- ....
T Consensus 182 PDgk~iaf~~~D~s~V~~~~~~~~~~-----------------------------~~~p~~~~~~Yp~~G~~n---p~~~ 229 (465)
T d1xfda1 182 PDGTRLAYAAINDSRVPIMELPTYTG-----------------------------SIYPTVKPYHYPKAGSEN---PSIS 229 (465)
T ss_dssp TTSSEEEEEEEECTTSCEEEECCCSS-----------------------------SSSCCCEEEECCBTTSCC---CEEE
T ss_pred CCCCeEEEEEecccccceeecccccc-----------------------------cccceeeeeeccccCCCC---Ccee
Confidence 99999998764 34444443221000 001112222222111100 0124
Q ss_pred EEEEECCCceeEEEEeC------CCCCeEEEEEeCCCCcEEEEEeC-C---CcEEEEEeecCeEEEEEecCCC-C----e
Q 001184 856 VSLFNMMNFKVMTTFMS------PPPASTFLAFHPQDNNIIAIGME-D---STIQIYNVRVDEVKTKLKGHQK-H----I 920 (1130)
Q Consensus 856 i~iwd~~~~~~~~~~~~------~~~~i~~l~~sp~~~~~lasg~~-d---g~v~iwd~~~~~~~~~l~~h~~-~----V 920 (1130)
+.++|+.++........ ....+..+.|+| ++++++.... + ..|.++|..++++...+..+.. . -
T Consensus 230 l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~-d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~ 308 (465)
T d1xfda1 230 LHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQN 308 (465)
T ss_dssp EEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCC
T ss_pred EEEEecCCCcEEEEEeccCcCccccceeeeeEEcC-CCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccC
Confidence 77788876544322211 122367789999 6776655432 2 2588889999987665543322 1 1
Q ss_pred eEEEEccCCCeEEE--Ee-CCC--cEEEEECCCCcc--cceeeEeccCCCCCCCeEEE-EEcCCCcEEEE-Ec-----CC
Q 001184 921 TGLAFSTNLNILVS--SG-SDA--QLIFWNTDTWEK--RKSIAIQLPAGKLPVGETRV-QFHSDQVRLLV-NH-----ET 986 (1130)
Q Consensus 921 ~~l~~s~dg~~L~s--~s-~Dg--~i~vwd~~~~~~--~~~~~~~~~~~~~~~~v~~~-~~s~d~~~l~~-~~-----d~ 986 (1130)
....|++||+.++. .+ .+| .+....+..... .......+..+. -.|..+ .++.++..+.. +. ..
T Consensus 309 ~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~--w~V~~i~~~d~~~~~vyF~a~~~~p~~~ 386 (465)
T d1xfda1 309 EEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGD--WDVTKILAYDEKGNKIYFLSTEDLPRRR 386 (465)
T ss_dssp CCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSS--SCEEEEEEEETTTTEEEEEESSSCTTCC
T ss_pred CceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCC--ceEEEEEEEcCCCCEEEEEEeCCCCCce
Confidence 34689999986442 22 232 344444322111 111111222221 344554 68888887764 32 22
Q ss_pred cEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCC---CcEEEEeCCCcccccccC
Q 001184 987 QLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD---GSIGVFDADSLRLRCRIA 1048 (1130)
Q Consensus 987 ~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D---g~i~vwd~~~~~~~~~~~ 1048 (1130)
+++-.++..+.....+...........++.|||||++++..+.. -.+.+++..+++.+..+.
T Consensus 387 hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le 451 (465)
T d1xfda1 387 QLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLE 451 (465)
T ss_dssp EEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEE
T ss_pred EEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCCCEEEEEc
Confidence 34444444443333333222234567899999999998866643 458888888888776654
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.08 E-value=8.1e-08 Score=104.28 Aligned_cols=167 Identities=10% Similarity=0.039 Sum_probs=106.0
Q ss_pred CCCeEEEEEeCCCCcEEEEEeC-CCcEEEEEeecC-eEE--EEEe--cCCCCeeEEEEccCCCeEEEEe-CCCcEEEEEC
Q 001184 874 PPASTFLAFHPQDNNIIAIGME-DSTIQIYNVRVD-EVK--TKLK--GHQKHITGLAFSTNLNILVSSG-SDAQLIFWNT 946 (1130)
Q Consensus 874 ~~~i~~l~~sp~~~~~lasg~~-dg~v~iwd~~~~-~~~--~~l~--~h~~~V~~l~~s~dg~~L~s~s-~Dg~i~vwd~ 946 (1130)
...+.++.|+| +++++++++. ...|.+|+.... ... .... ........++|+||++++.+.. .+++|.+|++
T Consensus 144 ~~h~h~v~~sP-dG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~ 222 (365)
T d1jofa_ 144 NTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVI 222 (365)
T ss_dssp TCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCcceEEEECC-CCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEe
Confidence 34588999999 7776666653 457888887643 222 2222 2345678999999999886665 4788999999
Q ss_pred CCCcccceeeEec---c----------CCCCCCCeEEEEEcCCCcEEEEEc--CC-----cEEEEECCCceeeee---ee
Q 001184 947 DTWEKRKSIAIQL---P----------AGKLPVGETRVQFHSDQVRLLVNH--ET-----QLAIYDGSKMECIRQ---WV 1003 (1130)
Q Consensus 947 ~~~~~~~~~~~~~---~----------~~~~~~~v~~~~~s~d~~~l~~~~--d~-----~i~v~d~~~~~~~~~---~~ 1003 (1130)
+.+.......... . ..........+.++|||++|+++. +. .+..|++.....+.. +.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~ 302 (365)
T d1jofa_ 223 DPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS 302 (365)
T ss_dssp CTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE
T ss_pred cCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEee
Confidence 8765432221111 0 001113456889999999998842 22 377777764322221 11
Q ss_pred cCCCCCCCeEEEEECC-CCCEEEEEe-CCCcEEEEeCCCc
Q 001184 1004 PQDVLSSPISSAAYSC-NSQLIYATF-TDGSIGVFDADSL 1041 (1130)
Q Consensus 1004 ~~~~~~~~v~~v~~s~-dg~~l~t~~-~Dg~i~vwd~~~~ 1041 (1130)
..........+++|+| +|++|+++. .++.|.||++...
T Consensus 303 ~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 303 PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 1111134557799998 899887776 5789999987543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.08 E-value=2.8e-08 Score=105.10 Aligned_cols=241 Identities=10% Similarity=0.038 Sum_probs=158.0
Q ss_pred ccceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEE
Q 001184 337 PRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVA 416 (1130)
Q Consensus 337 ~~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 416 (1130)
+.+++..+.-...+..++++|||+ |+++...+++|..||....... +......+.+++
T Consensus 17 ~~~v~~~~p~~~~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~~~~---------------------~~~~~~~~~gla 74 (302)
T d2p4oa1 17 PAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQI---------------------HATVEGKVSGLA 74 (302)
T ss_dssp CEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEE---------------------EEECSSEEEEEE
T ss_pred cccEEEECCCCCCcCCEEECCCCC-EEEEeCCCCEEEEEeCCCCEEE---------------------EEcCCCCcceEE
Confidence 344555555555799999999998 7888888999999987643221 234456799999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEe-c-
Q 001184 417 WSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQF-E- 494 (1130)
Q Consensus 417 ~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~-~- 494 (1130)
|+|||+++++...++.+..|+......................+++.++++ ++++.+.++.+..+|..+...... .
T Consensus 75 ~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~--~~v~~~~~~~i~~~~~~~~~~~~~~~~ 152 (302)
T d2p4oa1 75 FTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIWLEH 152 (302)
T ss_dssp ECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred EcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCC--EEeeccccccceeeeccCCcceeEecC
Confidence 999999999988888898888876443222112223455689999999998 788888888888888433332211 1
Q ss_pred ---------CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceee--ecCCCccEEEEEEecCCCeEEEeeecC
Q 001184 495 ---------GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD--YDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1130)
Q Consensus 495 ---------~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1130)
........+.+ +. +.++++.+..+.|..++......... ..........++++++|+++++...
T Consensus 153 ~~~~~~~~~~~~~~~ngi~~--~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~-- 227 (302)
T d2p4oa1 153 PMLARSNSESVFPAANGLKR--FG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHI-- 227 (302)
T ss_dssp GGGSCSSTTCCSCSEEEEEE--ET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBT--
T ss_pred CccceeeccCcccccccccc--cC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcC--
Confidence 11123444544 22 35666777888888888765443221 1112233567999999997766543
Q ss_pred CCCcEEEEeeCCCCceeEEEeccc-CceeEEEEE---cCCCCEEEEEeCC
Q 001184 564 EGDSHLVEWNESEGALKRTYIGFR-KKSAGVVQF---DTTRNRILAAGED 609 (1130)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~---~~~~~~l~~~~~d 609 (1130)
++.|..++.. ++......... ....++++| ++|++.|+.++..
T Consensus 228 --~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 228 --YNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp --TCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred --CCcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence 6789999865 44433333221 124678999 6677877776543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=4e-08 Score=102.10 Aligned_cols=238 Identities=12% Similarity=0.135 Sum_probs=143.9
Q ss_pred eEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCC---eEEEEEecCCccceee
Q 001184 371 EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKH---LIHLYTYQGSNDLCQS 447 (1130)
Q Consensus 371 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~---~i~vwd~~~~~~~~~~ 447 (1130)
.|.|-|...+.... +..+...+.+-+|||||++||...... .+.+.+..++...
T Consensus 20 ~l~i~d~dG~~~~~--------------------l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~--- 76 (269)
T d2hqsa1 20 ELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR--- 76 (269)
T ss_dssp EEEEEETTSCSCEE--------------------EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---
T ss_pred EEEEEcCCCCCcEE--------------------EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee---
Confidence 57777876544332 334456788999999999999875543 4666666665432
Q ss_pred eeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEE
Q 001184 448 LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKA 525 (1130)
Q Consensus 448 ~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~v 525 (1130)
.+..+.+......|+|+|+.+ +.....++...++. ....................+.+... ..+++...++...+
T Consensus 77 -~~~~~~~~~~~~~~spdg~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~i 153 (269)
T d2hqsa1 77 -QVASFPRHNGAPAFSPDGSKL-AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQ-NLAFTSDQAGRPQV 153 (269)
T ss_dssp -EEECCSSCEEEEEECTTSSEE-EEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSS-EEEEEECTTSSCEE
T ss_pred -EEeeeecccccceecCCCCee-eEeeecCCccceeecccccccceeeeeccccccccccccccc-cceecccccCCceE
Confidence 355677888999999999963 33333344333333 22222333333333333444443332 35555555665555
Q ss_pred E--EccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEE
Q 001184 526 W--LYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRI 603 (1130)
Q Consensus 526 w--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 603 (1130)
| ++...... .............++|+++.++.... ..+...+.+.+...+.. .... .. .......|+|||++|
T Consensus 154 ~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~~~~~~~-~~~~~~i~~~~~~~~~~-~~~~-~~-~~~~~p~~SPDG~~i 228 (269)
T d2hqsa1 154 YKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSS-NGGQQHIAKQDLATGGV-QVLS-ST-FLDETPSLAPNGTMV 228 (269)
T ss_dssp EEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEEEE-CSSCEEEEEEETTTCCE-EECC-CS-SSCEEEEECTTSSEE
T ss_pred eeeecccccce-eeecccccccccccccccceeEEEee-cCCceeeeEeecccccc-eEee-cC-ccccceEECCCCCEE
Confidence 5 44443222 33344556778899999999998874 23355677777665544 2222 22 245667899999988
Q ss_pred EEEeC---CCcEEEEeCCCCceeEEEeccCCCCCcceEEEcC
Q 001184 604 LAAGE---DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1130)
Q Consensus 604 ~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~ 642 (1130)
+..+. ...|++++++.+....... .. ..+...+|||
T Consensus 229 ~f~s~~~~~~~l~~~~~dg~~~~~lt~-~~--g~~~~p~WSP 267 (269)
T d2hqsa1 229 IYSSSQGMGSVLNLVSTDGRFKARLPA-TD--GQVKFPAWSP 267 (269)
T ss_dssp EEEEEETTEEEEEEEETTSCCEEECCC-SS--SEEEEEEECC
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEEeC-CC--CcEEeEEeCC
Confidence 76553 3468999998776544333 22 2567788988
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=5.4e-08 Score=101.10 Aligned_cols=233 Identities=11% Similarity=0.056 Sum_probs=148.6
Q ss_pred cceeeeccCCCCEEEEEEecCCCeEEEEEeCcC--eEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEE
Q 001184 338 RAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDG--EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRV 415 (1130)
Q Consensus 338 ~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 415 (1130)
......+.+...+..-+|||||++|+++....+ .+.+.+..++... .+..+.+.....
T Consensus 29 ~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~ 88 (269)
T d2hqsa1 29 YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR--------------------QVASFPRHNGAP 88 (269)
T ss_dssp CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE--------------------EEECCSSCEEEE
T ss_pred CCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee--------------------EEeeeecccccc
Confidence 334444567788999999999998665554444 3566666655543 244667788999
Q ss_pred EEcCCCCEEEEEeC-CCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCeeeE
Q 001184 416 AWSPDGNFIGVAFT-KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQ 492 (1130)
Q Consensus 416 ~~spdg~~las~~~-d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~~~ 492 (1130)
.|||||+.++.... ++...++......... .....+........+++++.. .+++...++...+|. ..+.....
T Consensus 89 ~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~i~~~~~~~~~~~~ 165 (269)
T d2hqsa1 89 AFSPDGSKLAFALSKTGSLNLYVMDLASGQI--RQVTDGRSNNTEPTWFPDSQN-LAFTSDQAGRPQVYKVNINGGAPQR 165 (269)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTTCCE--EECCCCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEETTSSCCEE
T ss_pred eecCCCCeeeEeeecCCccceeecccccccc--eeeeecccccccccccccccc-ceecccccCCceEeeeeccccccee
Confidence 99999999887654 3333344333322111 123344555666778888885 455565666555554 55555566
Q ss_pred ecCCCcCEEEEeecccCCccEEEEE-ecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEE
Q 001184 493 FEGHEAPVYSVCPHQKENIHFIFST-AVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1130)
Q Consensus 493 ~~~h~~~v~~~~~~~~~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1130)
+..+........|++ ++..++.. ...+...+|..+...................|+|||+.|+..+. ..+...|++
T Consensus 166 ~~~~~~~~~~~~~sp--dg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~-~~~~~~l~~ 242 (269)
T d2hqsa1 166 ITWEGSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSS-QGMGSVLNL 242 (269)
T ss_dssp CCCSSSEEEEEEECT--TSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEE-ETTEEEEEE
T ss_pred eeccccccccccccc--ccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEc-CCCCcEEEE
Confidence 666666666677755 44555554 44556666666555544555555566778899999999987764 234678999
Q ss_pred eeCCCCceeEEEecccCceeEEEEEcC
Q 001184 572 WNESEGALKRTYIGFRKKSAGVVQFDT 598 (1130)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1130)
+++..+... .+... ...+...+|+|
T Consensus 243 ~~~dg~~~~-~lt~~-~g~~~~p~WSP 267 (269)
T d2hqsa1 243 VSTDGRFKA-RLPAT-DGQVKFPAWSP 267 (269)
T ss_dssp EETTSCCEE-ECCCS-SSEEEEEEECC
T ss_pred EECCCCCEE-EEeCC-CCcEEeEEeCC
Confidence 998876654 34433 33677788887
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.92 E-value=1.4e-07 Score=97.10 Aligned_cols=240 Identities=8% Similarity=-0.027 Sum_probs=151.5
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
+.-....++++++|+.+++..+..+.+..++..+...... ...+ ......++++++|++++
T Consensus 12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~------------------~~~~-~~~p~gvav~~~g~i~v 72 (260)
T d1rwia_ 12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL------------------PFNG-LYQPQGLAVDGAGTVYV 72 (260)
T ss_dssp SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC------------------CCCS-CCSCCCEEECTTCCEEE
T ss_pred CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe------------------ccCC-ccCceEEEEcCCCCEEE
Confidence 5567799999999984444445567777777654433210 0111 22456789999999888
Q ss_pred EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEec-CCCcCEEEEe
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE-GHEAPVYSVC 504 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~-~h~~~v~~~~ 504 (1130)
+....+.+++++-.++..+. .. .......++++.++++ ++++-.....+..++..+.....+. .-......++
T Consensus 73 ~d~~~~~i~~~~~~~~~~~~---~~-~~~~~p~~iavd~~g~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~ 146 (260)
T d1rwia_ 73 TDFNNRVVTLAAGSNNQTVL---PF-DGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVA 146 (260)
T ss_dssp EETTTEEEEECTTCSCCEEC---CC-CSCCSEEEEEECTTCC--EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEE
T ss_pred eeeeeceeeeeeeccceeee---ee-eeeeecccccccccce--eEeeccccccccccccccceeeeeeecccCCcceee
Confidence 87777777666554443221 12 2234578999999998 6666666777888885444433332 2223456777
Q ss_pred ecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEe
Q 001184 505 PHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYI 584 (1130)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1130)
+.+ ++.++++...++.|..++.+.................+++.++|+++++... .+.|..++..... ...+.
T Consensus 147 ~~~--~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~----~~~i~~~~~~~~~-~~~~~ 219 (260)
T d1rwia_ 147 VDN--SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTT-STVLP 219 (260)
T ss_dssp ECT--TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TTEEEEECTTCSC-CEECC
T ss_pred ecC--CCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecC----CCEEEEEeCCCCe-EEEEc
Confidence 754 5577888888889999988765544433334456789999999987777643 6788888765432 23322
Q ss_pred cccCceeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001184 585 GFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDM 617 (1130)
Q Consensus 585 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 617 (1130)
...-.....++++++|+.+++-..+++|+.++.
T Consensus 220 ~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 220 FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS 252 (260)
T ss_dssp CCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred cCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence 222224567899999887777666676766554
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.91 E-value=5.2e-07 Score=95.20 Aligned_cols=247 Identities=14% Similarity=0.090 Sum_probs=156.9
Q ss_pred CCEEEEEEecCCCeEEEEEeC-------cCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC
Q 001184 348 SSVVSMDFHPFHHTLLVVGCG-------DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1130)
Q Consensus 348 ~~V~~v~fspdg~~llasg~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 420 (1130)
......+|.|+|+ ++++... +|.|..||..++....... . ......+.-..++|++|
T Consensus 18 ~g~EGpa~d~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~------~---------~~~~~~g~P~Gl~~~~d 81 (314)
T d1pjxa_ 18 PGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK------P---------EVNGYGGIPAGCQCDRD 81 (314)
T ss_dssp TTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEEC------C---------EETTEECCEEEEEECSS
T ss_pred CCCeEeEEeCCCC-EEEEECccccccccCCEEEEEECCCCcEEEEEC------C---------ccccCCCcceeEEEeCC
Confidence 4567789999998 4554322 3678899988876542100 0 01111234678999999
Q ss_pred CCEEEEEeCCCeEEEEEecCCccceeeeeeecCC-CCeeEEEEecCCCceEEEEEcC---------------CCcEEEEe
Q 001184 421 GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHV-GGVNDLAFSYPNKQLCIVTCGD---------------DKLIRVWD 484 (1130)
Q Consensus 421 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~-~~V~~i~~s~d~~~l~l~s~s~---------------d~~v~iwd 484 (1130)
|+.|+++...+.|...+.+++..........+.. ...++++|.++|. +.++-.. ++.|..++
T Consensus 82 g~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~--lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~ 159 (314)
T d1pjxa_ 82 ANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYCFT 159 (314)
T ss_dssp SSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEEEC
T ss_pred CCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC--EEEecCccCcccccccceeccCCceEEEEe
Confidence 9988888777778888887653221111111111 1367899999998 5565322 23455555
Q ss_pred cCCCeeeEecCCCcCEEEEeecccCCc---cEEEEEecCCcEEEEEccCCccee------eecCC-CccEEEEEEecCCC
Q 001184 485 LSGRKLFQFEGHEAPVYSVCPHQKENI---HFIFSTAVDGKIKAWLYDNVGSRV------DYDAP-GLWCTTMLYSADGS 554 (1130)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~~~~~~~~~~---~~l~s~s~dg~i~vwd~~~~~~~~------~~~~~-~~~v~~~~~s~~~~ 554 (1130)
..|+...... .-...+.++|++..++ .+.++-+..+.|..|++....... .+... ......+++.++|+
T Consensus 160 ~dg~~~~~~~-~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn 238 (314)
T d1pjxa_ 160 TDGQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN 238 (314)
T ss_dssp TTSCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred ecCceeEeeC-CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc
Confidence 5665444332 3344567888776543 244555678889988876544332 11111 22457899999999
Q ss_pred eEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEE-EEEeCCCcEEEEeCC
Q 001184 555 RLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRI-LAAGEDNQIKFWDMD 618 (1130)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~ 618 (1130)
..++... .+.|.+||...++.+..+..... ...+++|.|+++.| ++.+.+|.|+.+++.
T Consensus 239 lyVa~~~----~g~I~~~dp~~g~~~~~i~~p~~-~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 239 LLVANWG----SSHIEVFGPDGGQPKMRIRCPFE-KPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEEEEET----TTEEEEECTTCBSCSEEEECSSS-CEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EEEEEcC----CCEEEEEeCCCCEEEEEEECCCC-CEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 8776543 78999999988887777765433 67789999998755 555677888888764
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.90 E-value=7.8e-07 Score=92.34 Aligned_cols=243 Identities=12% Similarity=0.097 Sum_probs=165.5
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeee---ecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCC
Q 001184 411 SVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEI---DAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSG 487 (1130)
Q Consensus 411 ~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~---~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~ 487 (1130)
....|+++|||+.+++-..++.|++||.+ |+.+...... .+....-..+++.++....+++..+.++.|..++..|
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g 102 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG 102 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence 46899999999988887788899999965 4433322111 1122234567777665543444455667888888888
Q ss_pred CeeeEec-CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeee--cCCCccEEEEEEecCCCeEEEeeecCC
Q 001184 488 RKLFQFE-GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY--DAPGLWCTTMLYSADGSRLFSCGTSKE 564 (1130)
Q Consensus 488 ~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~~~~ 564 (1130)
.....+. ........+++. +++.++++....+.+.+++.+. +....+ ..+......+++.++++.+++...
T Consensus 103 ~~~~~~~~~~~~~p~~~avd--~~G~i~v~~~~~~~~~~~~~~g-~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~--- 176 (279)
T d1q7fa_ 103 QFVRKFGATILQHPRGVTVD--NKGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR--- 176 (279)
T ss_dssp CEEEEECTTTCSCEEEEEEC--TTSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEEEGG---
T ss_pred cceeecCCCcccccceeccc--cCCcEEEEeeccceeeEeccCC-ceeecccccccccccceeeeccceeEEeeecc---
Confidence 8877774 334556677764 4556777777777787776543 223332 234456788999999987777654
Q ss_pred CCcEEEEeeCCCCceeEEEecc-cCceeEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCceeEEEeccCCCCCcceEEEcC
Q 001184 565 GDSHLVEWNESEGALKRTYIGF-RKKSAGVVQFDTTRNRILAAGE-DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1130)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~ 642 (1130)
.+.|++||. +++.+..+... .......+++.++|+.+++-.. ++.|.+|+. +|+.+..+...........+++.|
T Consensus 177 -~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~ 253 (279)
T d1q7fa_ 177 -AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMD 253 (279)
T ss_dssp -GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEET
T ss_pred -ccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeC
Confidence 788999995 46666666321 1224567899999997766543 457999984 688777776554444678999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCC
Q 001184 643 EGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+|.+ +++..++.|++|.....
T Consensus 254 dG~l-~V~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 254 DGSV-VLASKDYRLYIYRYVQL 274 (279)
T ss_dssp TTEE-EEEETTTEEEEEECSCC
T ss_pred CCcE-EEEeCCCeEEEEEeeee
Confidence 9975 55668899999987643
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.89 E-value=9.3e-07 Score=91.73 Aligned_cols=245 Identities=11% Similarity=0.107 Sum_probs=161.7
Q ss_pred cceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCC-
Q 001184 768 SKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDS- 846 (1130)
Q Consensus 768 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~- 846 (1130)
.....++++++|+.+++-..+..|++|+.+. ..... + .+.. ...+.......+++..+..
T Consensus 23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G-------~~~~~-----~--~~~~-----~~~~~~~~p~~~~~~~~~~~ 83 (279)
T d1q7fa_ 23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-------RFKFQ-----F--GECG-----KRDSQLLYPNRVAVVRNSGD 83 (279)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTTS-------CEEEE-----E--CCBS-----SSTTCBSSEEEEEEETTTTE
T ss_pred CCccEEEEcCCCCEEEEECCCCEEEEEeCCC-------CEEEE-----e--cccC-----CCcccccccccccccccccc
Confidence 3467899999999777766788888886431 11100 0 0000 0001222344566555544
Q ss_pred EEEEEe--CCeEEEEECCCceeEEEEe-CCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEE--ecCCCCee
Q 001184 847 YVMSAG--GGKVSLFNMMNFKVMTTFM-SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKL--KGHQKHIT 921 (1130)
Q Consensus 847 ~la~~~--dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l--~~h~~~V~ 921 (1130)
.+++.. ++.|..++.. ++....+. ........+++.+ ++.++++....+.+.+++.. ++.+..+ ..+.....
T Consensus 84 ~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~ 160 (279)
T d1q7fa_ 84 IIVTERSPTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPN 160 (279)
T ss_dssp EEEEECGGGCEEEEECTT-SCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEE
T ss_pred cceeccCCcccccccccc-ccceeecCCCcccccceecccc-CCcEEEEeeccceeeEeccC-Cceeecccccccccccc
Confidence 444443 4678888874 55555554 3345678899998 78888877777888888754 5556655 34566788
Q ss_pred EEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE--cCCcEEEEECCCceee
Q 001184 922 GLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN--HETQLAIYDGSKMECI 999 (1130)
Q Consensus 922 ~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~--~d~~i~v~d~~~~~~~ 999 (1130)
.+++.++++.+++....+.|++||.+... ...............+++.++|.++++. .+..|.+|+. +|+.+
T Consensus 161 ~i~~d~~g~i~v~d~~~~~V~~~d~~G~~-----~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~ 234 (279)
T d1q7fa_ 161 GVVVNDKQEIFISDNRAHCVKVFNYEGQY-----LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLI 234 (279)
T ss_dssp EEEECSSSEEEEEEGGGTEEEEEETTCCE-----EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEE
T ss_pred eeeeccceeEEeeeccccceeeeecCCce-----eeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEE
Confidence 99999999988888888999999986521 1222222223457889999999988774 3456999984 58877
Q ss_pred eeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcc
Q 001184 1000 RQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLR 1042 (1130)
Q Consensus 1000 ~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~ 1042 (1130)
..+..... ......+++.+||.+++ ++.+++|++|......
T Consensus 235 ~~~~~~~~-~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~ 275 (279)
T d1q7fa_ 235 SALESKVK-HAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLA 275 (279)
T ss_dssp EEEEESSC-CSCEEEEEEETTTEEEE-EETTTEEEEEECSCCC
T ss_pred EEEeCCCC-CCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeec
Confidence 77654421 24578999999997655 5578999999987653
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=1e-06 Score=98.52 Aligned_cols=134 Identities=10% Similarity=0.037 Sum_probs=89.6
Q ss_pred EecCCcEEEEEccCCcceeeecCC---CccEEEEEEecCCCeEEEeeec-----CCCCcEEEEeeCCCCceeEEEecc-c
Q 001184 517 TAVDGKIKAWLYDNVGSRVDYDAP---GLWCTTMLYSADGSRLFSCGTS-----KEGDSHLVEWNESEGALKRTYIGF-R 587 (1130)
Q Consensus 517 ~s~dg~i~vwd~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~~-----~~~~~~i~~wd~~~~~~~~~~~~~-~ 587 (1130)
-..+|.|.+||+.+++....+... ...+....|+||+++++..... ....+.+.++|+.++......... .
T Consensus 33 ~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~ 112 (465)
T d1xfda1 33 REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVS 112 (465)
T ss_dssp CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCC
T ss_pred EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCC
Confidence 355778999999887765544332 2356778899999998876421 122578999999988764432221 1
Q ss_pred CceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCC----------------CCcceEEEcCCCCEEEEEe
Q 001184 588 KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGL----------------PSLPRLRFNKEGNLLVVTT 651 (1130)
Q Consensus 588 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~----------------~~i~~v~~s~~~~~l~~~~ 651 (1130)
...+....|||||+.++-.. ++.|++.+..++..++........ ..-.++.|||||+.||...
T Consensus 113 ~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~ 191 (465)
T d1xfda1 113 NAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA 191 (465)
T ss_dssp SCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred ccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEE
Confidence 22345578999999988876 577899988877665554322110 0114677999999999875
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.80 E-value=5e-07 Score=92.74 Aligned_cols=237 Identities=10% Similarity=0.015 Sum_probs=149.6
Q ss_pred ccEEEEEEcCCCCEEEEE-eCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCC
Q 001184 410 ISVSRVAWSPDGNFIGVA-FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG 487 (1130)
Q Consensus 410 ~~V~~v~~spdg~~las~-~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~ 487 (1130)
..-..+++++||+..++. +..+.+..++..+.... .....+ ......++++++|. ++++....+.+++++ .++
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~--~~~~~~-~~~p~gvav~~~g~--i~v~d~~~~~i~~~~~~~~ 88 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT--VLPFNG-LYQPQGLAVDGAGT--VYVTDFNNRVVTLAAGSNN 88 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEE--ECCCCS-CCSCCCEEECTTCC--EEEEETTTEEEEECTTCSC
T ss_pred CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEE--EeccCC-ccCceEEEEcCCCC--EEEeeeeeceeeeeeeccc
Confidence 346899999999966654 45577777766543321 112222 23467899999998 778887777787777 555
Q ss_pred CeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCc
Q 001184 488 RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDS 567 (1130)
Q Consensus 488 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 567 (1130)
..+....+ ......+++.+ +++++++-..+..+..++...................++++++|+.+++... .+
T Consensus 89 ~~~~~~~~-~~~p~~iavd~--~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~----~~ 161 (260)
T d1rwia_ 89 QTVLPFDG-LNYPEGLAVDT--QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD----NN 161 (260)
T ss_dssp CEECCCCS-CCSEEEEEECT--TCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGG----GT
T ss_pred eeeeeeee-eeecccccccc--cceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccc----cc
Confidence 44443332 34567888754 4567766666666777766544333322222234678999999987776553 67
Q ss_pred EEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEE
Q 001184 568 HLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLL 647 (1130)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l 647 (1130)
.|..++....... .+..........+++.++|+++++....+.|..++..... ...+. .........++++++|.++
T Consensus 162 ~i~~~d~~~~~~~-~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~-~~~~~~P~~i~~d~~g~l~ 238 (260)
T d1rwia_ 162 RVVKLEAESNNQV-VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLP-FTGLNTPLAVAVDSDRTVY 238 (260)
T ss_dssp EEEEECTTTCCEE-ECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECC-CCSCCCEEEEEECTTCCEE
T ss_pred cccccccccceee-eeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEc-cCCCCCeEEEEEeCCCCEE
Confidence 8999997654433 3322222245678999999888887778889888865543 22222 2222356789999999877
Q ss_pred EEEeCCCcEEEEEc
Q 001184 648 VVTTADQGIKILAN 661 (1130)
Q Consensus 648 ~~~~~dg~i~iw~~ 661 (1130)
++-..++.|+.++.
T Consensus 239 vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 239 VADRGNDRVVKLTS 252 (260)
T ss_dssp EEEGGGTEEEEECC
T ss_pred EEECCCCEEEEEeC
Confidence 77666676665543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.80 E-value=4.6e-07 Score=95.43 Aligned_cols=227 Identities=15% Similarity=0.099 Sum_probs=150.0
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cC-CC
Q 001184 411 SVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LS-GR 488 (1130)
Q Consensus 411 ~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~-~~ 488 (1130)
.+..++++|||+++++...+++|..|+.... .. .+......+.+++|++||+ ++++...++.+..|+ .. ..
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~---~~~~~~~~~~gla~~~dG~--l~v~~~~~~~~~~~~~~~~~~ 101 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQ---IHATVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSDG 101 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EE---EEEECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTTS
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EE---EEEcCCCCcceEEEcCCCC--eEEEecCCceEEEEEeccccc
Confidence 5889999999999999999999988886543 22 2445667899999999999 778777778888777 22 22
Q ss_pred eeeEec--CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeec----------CCCccEEEEEEecCCCeE
Q 001184 489 KLFQFE--GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD----------APGLWCTTMLYSADGSRL 556 (1130)
Q Consensus 489 ~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~----------~~~~~v~~~~~s~~~~~l 556 (1130)
....+. ......+.+++. +++.++++.+.++.+..++........... ........+.+. +..+
T Consensus 102 ~~~~~~~~~~~~~~n~i~~~--~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l 177 (302)
T d2p4oa1 102 TVETLLTLPDAIFLNGITPL--SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFL 177 (302)
T ss_dssp CEEEEEECTTCSCEEEEEES--SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEE
T ss_pred ceeeccccCCccccceeEEc--cCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCce
Confidence 222222 244567778774 456788888888888888776654332111 111234555554 4555
Q ss_pred EEeeecCCCCcEEEEeeCCCCcee---EEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCC
Q 001184 557 FSCGTSKEGDSHLVEWNESEGALK---RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLP 633 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 633 (1130)
+.+.. ..+.|+.++....... ..+.. ......+++.++|+++++...++.|..++.. ++............
T Consensus 178 ~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~--~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~ 251 (302)
T d2p4oa1 178 YVSNT---EKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVI 251 (302)
T ss_dssp EEEET---TTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCT
T ss_pred eeecC---CCCeEEeccccccccccccccccC--CCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecCCCCC
Confidence 55542 3778888887654322 11111 1234569999999988888888999999875 44444444444444
Q ss_pred CcceEEE---cCCCCEEEEEeCCC
Q 001184 634 SLPRLRF---NKEGNLLVVTTADQ 654 (1130)
Q Consensus 634 ~i~~v~~---s~~~~~l~~~~~dg 654 (1130)
..++++| ++|++.|++++..+
T Consensus 252 ~pt~vafg~~~~D~~~Lyvtt~~g 275 (302)
T d2p4oa1 252 GSTAVAFGQTEGDCTAIYVVTNGG 275 (302)
T ss_dssp TEEEEEECCSTTTTTEEEEEECTT
T ss_pred CceEEEEcCCCCCCCEEEEECCCC
Confidence 6789999 67888888776553
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.76 E-value=7.1e-06 Score=86.57 Aligned_cols=233 Identities=11% Similarity=0.038 Sum_probs=150.4
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
....+..++|.++|+ |.++-...+.|.-|+.++++... ...........+++++||++++
T Consensus 38 ~~~~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~-------------------~~~~~~~~p~gla~~~dG~l~v 97 (319)
T d2dg1a1 38 KGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKR-------------------PFVSHKANPAAIKIHKDGRLFV 97 (319)
T ss_dssp SCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEE-------------------EEECSSSSEEEEEECTTSCEEE
T ss_pred CCcCcEeCEECCCCC-EEEEECCCCEEEEEECCCCeEEE-------------------EEeCCCCCeeEEEECCCCCEEE
Confidence 445668999999997 77887788999999988765443 1234455688999999999887
Q ss_pred EEeCC----CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcC------CCcEEEEecCCCeeeEecC
Q 001184 426 VAFTK----HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD------DKLIRVWDLSGRKLFQFEG 495 (1130)
Q Consensus 426 s~~~d----~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~------d~~v~iwd~~~~~~~~~~~ 495 (1130)
+...+ +.+...+..++.... ...-..-......+++.++|+ +.++... .+.+..++..++.+..+..
T Consensus 98 a~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~nd~~~d~~G~--l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~ 174 (319)
T d2dg1a1 98 CYLGDFKSTGGIFAATENGDNLQD-IIEDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ 174 (319)
T ss_dssp EECTTSSSCCEEEEECTTSCSCEE-EECSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTTSCCEEEEEE
T ss_pred EecCCCccceeEEEEcCCCceeee-eccCCCcccCCcceeEEeccc--eeecccccccccCcceeEEEecccceeEEEee
Confidence 76432 234444444433221 111111233578899999998 5555432 2345556666665555544
Q ss_pred CCcCEEEEeecccCCccE-EEEEecCCcEEEEEccCCccee--------eecCCCccEEEEEEecCCCeEEEeeecCCCC
Q 001184 496 HEAPVYSVCPHQKENIHF-IFSTAVDGKIKAWLYDNVGSRV--------DYDAPGLWCTTMLYSADGSRLFSCGTSKEGD 566 (1130)
Q Consensus 496 h~~~v~~~~~~~~~~~~~-l~s~s~dg~i~vwd~~~~~~~~--------~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1130)
.-...+.++|++ +++. .++-+..++|..|+++...... ...........+++.++|+..++... .
T Consensus 175 ~~~~pnGia~s~--dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~----~ 248 (319)
T d2dg1a1 175 NISVANGIALST--DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG----Q 248 (319)
T ss_dssp EESSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET----T
T ss_pred ccceeeeeeecc--ccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcC----C
Confidence 444567788865 4454 4555778899999986543221 11112224678999999997776653 7
Q ss_pred cEEEEeeCCCCceeEEEeccc-----CceeEEEEEcCCCCEEEEEeC
Q 001184 567 SHLVEWNESEGALKRTYIGFR-----KKSAGVVQFDTTRNRILAAGE 608 (1130)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~ 608 (1130)
+.|.++|. .|+.+..+.... ...+.+++|.+++..+++...
T Consensus 249 g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 249 GRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp TEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred CEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 89999995 688887775322 124678999988877766543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.74 E-value=3.2e-06 Score=88.99 Aligned_cols=244 Identities=11% Similarity=0.041 Sum_probs=148.6
Q ss_pred cEEEEEEcCCCCEEEEEeC-------CCeEEEEEecCCccceeee-eeecCCCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001184 411 SVSRVAWSPDGNFIGVAFT-------KHLIHLYTYQGSNDLCQSL-EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRV 482 (1130)
Q Consensus 411 ~V~~v~~spdg~~las~~~-------d~~i~vwd~~~~~~~~~~~-~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~i 482 (1130)
..-.++|.|||+++++... +++|..||..++....... ......+.-..++|.+++. .++.+...+.|..
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~--~l~vad~~~~i~~ 96 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN--QLFVADMRLGLLV 96 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS--EEEEEETTTEEEE
T ss_pred CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCC--EEEEEECCCeEEE
Confidence 3567899999998776432 4678899988875322110 0111223457899999998 5666666677888
Q ss_pred EecCCCeeeEecCCC-----cCEEEEeecccCCccEEEEEecC-------------CcEEEEEccCCcceeeecCCCccE
Q 001184 483 WDLSGRKLFQFEGHE-----APVYSVCPHQKENIHFIFSTAVD-------------GKIKAWLYDNVGSRVDYDAPGLWC 544 (1130)
Q Consensus 483 wd~~~~~~~~~~~h~-----~~v~~~~~~~~~~~~~l~s~s~d-------------g~i~vwd~~~~~~~~~~~~~~~~v 544 (1130)
.|.++.....+.... ...+.+++. ++|.+.++.... ..=++|.++.......+...-...
T Consensus 97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d--~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~~p 174 (314)
T d1pjxa_ 97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFD--YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFP 174 (314)
T ss_dssp EETTSCEEECCSBCTTSCBCBCCCEEEEC--TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSE
T ss_pred EeCCCcEEEEEeccccccccCCCcEEEEC--CCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeCCccee
Confidence 886665544332211 124667774 455666654221 111334333222222222222235
Q ss_pred EEEEEecCCC----eEEEeeecCCCCcEEEEeeCCCCceeE------EEecccCceeEEEEEcCCCCEEEEEeCCCcEEE
Q 001184 545 TTMLYSADGS----RLFSCGTSKEGDSHLVEWNESEGALKR------TYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKF 614 (1130)
Q Consensus 545 ~~~~~s~~~~----~l~~~~~~~~~~~~i~~wd~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 614 (1130)
+.++|+|++. .|+++.. ..+.|+.||+.....+. .+.+........+++..+|+..++....+.|++
T Consensus 175 NGi~~~~d~d~~~~~lyv~d~---~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~ 251 (314)
T d1pjxa_ 175 NGIAVRHMNDGRPYQLIVAET---PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV 251 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEET---TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred eeeEECCCCCcceeEEEEEee---cccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEE
Confidence 6889999875 4544432 37788888865432221 122222223456899999998888778899999
Q ss_pred EeCCCCceeEEEeccCCCCCcceEEEcCCCCEE-EEEeCCCcEEEEEcCC
Q 001184 615 WDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLL-VVTTADQGIKILANAD 663 (1130)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l-~~~~~dg~i~iw~~~~ 663 (1130)
||.+.++.+..+..+.. ...+++|.|+++.| ++.+.++.|...++..
T Consensus 252 ~dp~~g~~~~~i~~p~~--~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 252 FGPDGGQPKMRIRCPFE--KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp ECTTCBSCSEEEECSSS--CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EeCCCCEEEEEEECCCC--CEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence 99988887777765543 57899999999755 4455678887777643
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.66 E-value=9.2e-06 Score=85.71 Aligned_cols=234 Identities=11% Similarity=0.089 Sum_probs=146.5
Q ss_pred CceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCC----CcEEEEEeecCe
Q 001184 834 DVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED----STIQIYNVRVDE 908 (1130)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~d----g~v~iwd~~~~~ 908 (1130)
..+..++|.++|++.++-. .++|..|+..+.+....+.........+++++ +++++++...+ +.|...+..++.
T Consensus 40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~ 118 (319)
T d2dg1a1 40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDN 118 (319)
T ss_dssp CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCce
Confidence 3456899999999666654 78999999988877766666667789999999 78877765432 234444444444
Q ss_pred EEEEEec--CCCCeeEEEEccCCCeEEEEeCC------CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEE
Q 001184 909 VKTKLKG--HQKHITGLAFSTNLNILVSSGSD------AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRL 980 (1130)
Q Consensus 909 ~~~~l~~--h~~~V~~l~~s~dg~~L~s~s~D------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 980 (1130)
....... -......+++.++|++.++.... +.+..++.+..... ...... .....++|+||++.|
T Consensus 119 ~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~-~~~~~~------~~pnGia~s~dg~~l 191 (319)
T d2dg1a1 119 LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNI------SVANGIALSTDEKVL 191 (319)
T ss_dssp CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEE------SSEEEEEECTTSSEE
T ss_pred eeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeE-EEeecc------ceeeeeeeccccceE
Confidence 3333321 12346789999999877764321 23444444432211 111111 334679999999877
Q ss_pred EEE--cCCcEEEEECCC-ceeeeee----ecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCccc
Q 001184 981 LVN--HETQLAIYDGSK-MECIRQW----VPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYM 1053 (1130)
Q Consensus 981 ~~~--~d~~i~v~d~~~-~~~~~~~----~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~ 1053 (1130)
.++ ..+.|..|++.. +...... ............+++.++|++.++....+.|.+||- .|+.+..+..+..
T Consensus 192 yvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~- 269 (319)
T d2dg1a1 192 WVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR- 269 (319)
T ss_dssp EEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG-
T ss_pred EEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCc-
Confidence 653 578899998763 2211111 111111223568999999998888888999999995 6888877754321
Q ss_pred ccCCCCCceeeeEEEEEcCCCCCEEEEE
Q 001184 1054 SQASPNSQTVFPLVVTSHPQEPNQLAVG 1081 (1130)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 1081 (1130)
..++...+.+++|.+....++++.
T Consensus 270 ----~~~~~~~~~~~~~~~~~~~~~~t~ 293 (319)
T d2dg1a1 270 ----DEGHMLRSTHPQFIPGTNQLIICS 293 (319)
T ss_dssp ----GGTCSCBCCEEEECTTSCEEEEEE
T ss_pred ----CCCcCceeeeEEEeCCCCEEEEEc
Confidence 123445566788988544444443
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.62 E-value=3.3e-06 Score=87.69 Aligned_cols=236 Identities=10% Similarity=0.045 Sum_probs=129.1
Q ss_pred EEecC--CCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeC-C
Q 001184 354 DFHPF--HHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFT-K 430 (1130)
Q Consensus 354 ~fspd--g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~-d 430 (1130)
..||| |++++++. +|.|.+.|+.+++... +..+.+.+...+|||||++||.... +
T Consensus 5 ~~sPdi~G~~v~f~~--~~dl~~~d~~~g~~~~--------------------Lt~~~~~~~~p~~SPDG~~iaf~~~~~ 62 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC--CDDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIAIRVMRG 62 (281)
T ss_dssp CEEEEEETTEEEEEE--TTEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEEEEEEES
T ss_pred ccCCCCCCCEEEEEe--CCcEEEEECCCCCEEE--------------------EecCCCcccCEEECCCCCEEEEEEeeC
Confidence 46899 99866664 5678888999887653 4566778899999999999997642 1
Q ss_pred -----CeEEEEEecCCccceeeee---eecCCCCeeEEEEecCCCceEEEEEcC------CCcEEEEecCCCeeeEecCC
Q 001184 431 -----HLIHLYTYQGSNDLCQSLE---IDAHVGGVNDLAFSYPNKQLCIVTCGD------DKLIRVWDLSGRKLFQFEGH 496 (1130)
Q Consensus 431 -----~~i~vwd~~~~~~~~~~~~---~~~h~~~V~~i~~s~d~~~l~l~s~s~------d~~v~iwd~~~~~~~~~~~h 496 (1130)
..|.+++..+++..+.... ...........+|+|||+ .++.... ...+...+..+.........
T Consensus 63 ~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (281)
T d1k32a2 63 SSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVENDGINFVPLNLG 140 (281)
T ss_dssp TTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGGGTEEEECCSC
T ss_pred CCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCC--EEEEEEccCCCccceeeeeecCCCceeEEecCC
Confidence 2477777777754321100 112223467889999999 4444322 12344455444444332221
Q ss_pred CcCEEEEeecccCCccEEEEEecCC-----------cEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCC
Q 001184 497 EAPVYSVCPHQKENIHFIFSTAVDG-----------KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEG 565 (1130)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg-----------~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1130)
......+ ..++..++....+. ....+....... ..............++++ .++... ..++
T Consensus 141 --~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~ 212 (281)
T d1k32a2 141 --PATHILF--ADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAF-KKIVDMSTHVSSPVIVGH--RIYFIT-DIDG 212 (281)
T ss_dssp --SCSEEEE--ETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEE-EEEECCSSCCEEEEEETT--EEEEEE-CTTS
T ss_pred --ccceeee--cCCCeEEEeeccccceeeeeccCCcceeeeeccccce-eeccCCccccceeeeecc--ccceec-cccc
Confidence 1112211 12222332222111 111111111111 112222223344445544 333333 3445
Q ss_pred CcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEE
Q 001184 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTS 625 (1130)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 625 (1130)
...|+++|+.++...+ +..... .....|+|||+.|+.. .++.|+++|+.+++....
T Consensus 213 ~~~l~~~d~~g~~~~~-lt~~~~--~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i 268 (281)
T d1k32a2 213 FGQIYSTDLDGKDLRK-HTSFTD--YYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKI 268 (281)
T ss_dssp SCEEEEEETTSCSCEE-CCCCCS--SCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEEC
T ss_pred ccceEEEeCCCCceEE-eecCCC--cccccCcCCCCEEEEE-eCCEEEEEECCCCCEEEe
Confidence 7789999988776544 332222 2334689999987764 468899999988876543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.33 E-value=2.8e-05 Score=80.31 Aligned_cols=215 Identities=12% Similarity=0.100 Sum_probs=113.8
Q ss_pred ccceeeeccCCCCEEEEEEecCCCeEEEEEeCcC-----eEEEEeCCCCceeecccceeeeccccccceeeeeecCCCcc
Q 001184 337 PRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDG-----EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSIS 411 (1130)
Q Consensus 337 ~~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 411 (1130)
.++..+...+...+...+|||||++++++...++ .|.+++..+++........ .........
T Consensus 30 ~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~-------------~~~~~~~~~ 96 (281)
T d1k32a2 30 SGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFS-------------GKSTGRRMF 96 (281)
T ss_dssp TCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCC-------------EEEETTEEC
T ss_pred CCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecC-------------CCccCcccc
Confidence 3444444457788999999999998666654332 4788888887765310000 011123345
Q ss_pred EEEEEEcCCCCEEEEEeCC------CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCC-------
Q 001184 412 VSRVAWSPDGNFIGVAFTK------HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK------- 478 (1130)
Q Consensus 412 V~~v~~spdg~~las~~~d------~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~------- 478 (1130)
....+|+|||+.|+..... ..+...+..++... ..+...... .+.+++.. .++....+.
T Consensus 97 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~ 168 (281)
T d1k32a2 97 TDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV------PLNLGPATH-ILFADGRR-VIGRNTFELPHWKGYR 168 (281)
T ss_dssp SEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE------ECCSCSCSE-EEEETTEE-EEEESCSCCTTSTTCC
T ss_pred ccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeE------EecCCccce-eeecCCCe-EEEeeccccceeeeec
Confidence 6788999999999886432 23455555554311 122333333 34455543 334332221
Q ss_pred ----cEEEEecCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCC--cEEEEEccCCcceeeecCCCccEEEEEEecC
Q 001184 479 ----LIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDG--KIKAWLYDNVGSRVDYDAPGLWCTTMLYSAD 552 (1130)
Q Consensus 479 ----~v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~ 552 (1130)
....+............+........+. ++ .++.....++ .|.++|++.............. ...|+||
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~~--~~~~SpD 243 (281)
T d1k32a2 169 GGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIV--GH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYY--PRHLNTD 243 (281)
T ss_dssp STTCCEEEEEEETTEEEEEECCSSCCEEEEEE--TT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSC--EEEEEES
T ss_pred cCCcceeeeeccccceeeccCCccccceeeee--cc-ccceecccccccceEEEeCCCCceEEeecCCCcc--cccCcCC
Confidence 1112221222222222223333333332 22 2333343443 4666677665544332222223 3468999
Q ss_pred CCeEEEeeecCCCCcEEEEeeCCCCceeEE
Q 001184 553 GSRLFSCGTSKEGDSHLVEWNESEGALKRT 582 (1130)
Q Consensus 553 ~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1130)
|+.|+... ++.|+++|+.+++..+.
T Consensus 244 G~~I~f~~-----~~~l~~~d~~~g~~~~i 268 (281)
T d1k32a2 244 GRRILFSK-----GGSIYIFNPDTEKIEKI 268 (281)
T ss_dssp SSCEEEEE-----TTEEEEECTTTCCEEEC
T ss_pred CCEEEEEe-----CCEEEEEECCCCCEEEe
Confidence 99998754 67899999988876543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.23 E-value=0.00037 Score=71.87 Aligned_cols=222 Identities=13% Similarity=0.034 Sum_probs=143.6
Q ss_pred EEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCC
Q 001184 351 VSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTK 430 (1130)
Q Consensus 351 ~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d 430 (1130)
.+..|++.+..|..+--..+.|.-||..+++... | .....+.++++.++|.+++++ .+
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~------~---------------~~~~~~~~i~~~~dg~l~va~-~~ 78 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKTV------H---------------ALPFMGSALAKISDSKQLIAS-DD 78 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE------E---------------ECSSCEEEEEEEETTEEEEEE-TT
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEE------E---------------ECCCCcEEEEEecCCCEEEEE-eC
Confidence 4567888665567776667899999999876532 1 123468899999999877654 44
Q ss_pred CeEEEEEecCCccceeeeeeec--CCCCeeEEEEecCCCceEEEEEcC----CCcEEEEe-cCCCeeeEecCCCcCEEEE
Q 001184 431 HLIHLYTYQGSNDLCQSLEIDA--HVGGVNDLAFSYPNKQLCIVTCGD----DKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1130)
Q Consensus 431 ~~i~vwd~~~~~~~~~~~~~~~--h~~~V~~i~~s~d~~~l~l~s~s~----d~~v~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1130)
-+.++|..+++.. ....... ....++++.+.|+|+ +.++... .+.-.+|. ..++....+. .-...+.+
T Consensus 79 -gl~~~d~~tg~~~-~l~~~~~~~~~~~~nd~~vd~~G~--iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~ 153 (295)
T d2ghsa1 79 -GLFLRDTATGVLT-LHAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSI 153 (295)
T ss_dssp -EEEEEETTTCCEE-EEECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEE
T ss_pred -ccEEeecccceee-EEeeeecCCCcccceeeEECCCCC--EEEEeccccccccceeEeeecCCcEEEEee-ccCCccee
Confidence 4889999988632 2212211 123588999999998 4444322 23445666 4454433332 33445677
Q ss_pred eecccCCccEEEEEecCCcEEEEEccCCcce------e--eecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC
Q 001184 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSR------V--DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1130)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~------~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1130)
+|++..+ .++++.+..+.|..++++..... . ...........+++..+|++.++.-. .+.|..||.
T Consensus 154 ~~s~d~~-~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~----~g~V~~~dp- 227 (295)
T d2ghsa1 154 CFSPDGT-TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVDRYDT- 227 (295)
T ss_dssp EECTTSC-EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEEEECT-
T ss_pred eecCCCc-eEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeC----CCceEEecC-
Confidence 8765432 35566677888998887543211 1 22334456789999999987776543 678999995
Q ss_pred CCceeEEEecccCceeEEEEEc-CCCCEEEEE
Q 001184 576 EGALKRTYIGFRKKSAGVVQFD-TTRNRILAA 606 (1130)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~ 606 (1130)
.|+.+..+.-... .+++++|. ++.+.|+..
T Consensus 228 ~G~~~~~i~lP~~-~~T~~~FGG~d~~~LyvT 258 (295)
T d2ghsa1 228 DGNHIARYEVPGK-QTTCPAFIGPDASRLLVT 258 (295)
T ss_dssp TCCEEEEEECSCS-BEEEEEEESTTSCEEEEE
T ss_pred CCcEeeEecCCCC-ceEEEEEeCCCCCEEEEE
Confidence 6888888876433 67888886 676666554
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.23 E-value=0.00064 Score=69.97 Aligned_cols=222 Identities=6% Similarity=0.011 Sum_probs=142.3
Q ss_pred EEEEecCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEec
Q 001184 838 CVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKG 915 (1130)
Q Consensus 838 ~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 915 (1130)
+..|++....|.-.+ .++|..||..+++.. .+. ....+.++++.+ ++.++++ +.+ .|.++|..+++.......
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~-dg~l~va-~~~-gl~~~d~~tg~~~~l~~~ 96 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKIS-DSKQLIA-SDD-GLFLRDTATGVLTLHAEL 96 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTTCCEEEEECS
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEec-CCCEEEE-EeC-ccEEeecccceeeEEeee
Confidence 466776555554444 688999999988654 333 345688999998 7777664 455 488999998875433221
Q ss_pred C----CCCeeEEEEccCCCeEEEEeCC----CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE--cC
Q 001184 916 H----QKHITGLAFSTNLNILVSSGSD----AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN--HE 985 (1130)
Q Consensus 916 h----~~~V~~l~~s~dg~~L~s~s~D----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~--~d 985 (1130)
. ...+..+.+.|+|++.++...+ +.-.+|.+..++..... ... .....++|+++++.+... ..
T Consensus 97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~-~~~------~~~Ng~~~s~d~~~l~~~dt~~ 169 (295)
T d2ghsa1 97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLF-ADI------SIPNSICFSPDGTTGYFVDTKV 169 (295)
T ss_dssp STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEE-EEE------SSEEEEEECTTSCEEEEEETTT
T ss_pred ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEe-ecc------CCcceeeecCCCceEEEeeccc
Confidence 1 1247889999999877765432 34466766665432211 111 345678999999977764 46
Q ss_pred CcEEEEECCC--cee---eeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCC
Q 001184 986 TQLAIYDGSK--MEC---IRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNS 1060 (1130)
Q Consensus 986 ~~i~v~d~~~--~~~---~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1060 (1130)
+.|..|++.. +.. ...+............+++..+|.+.++.-..+.|.+||- .|+.+..+..+.
T Consensus 170 ~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~--------- 239 (295)
T d2ghsa1 170 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPG--------- 239 (295)
T ss_dssp CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSC---------
T ss_pred ceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCC---------
Confidence 7788887642 111 1111111122456789999999998887777889999994 688887776432
Q ss_pred ceeeeEEEEEcCCCC-CEEEEEeC
Q 001184 1061 QTVFPLVVTSHPQEP-NQLAVGLT 1083 (1130)
Q Consensus 1061 ~~~~~~~~~~~~~~~-~~l~s~~~ 1083 (1130)
..+++++|-..+. .+++|+..
T Consensus 240 --~~~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 240 --KQTTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp --SBEEEEEEESTTSCEEEEEEBC
T ss_pred --CceEEEEEeCCCCCEEEEEECC
Confidence 2466788864443 45555443
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.93 E-value=0.0014 Score=68.00 Aligned_cols=102 Identities=17% Similarity=0.143 Sum_probs=75.1
Q ss_pred EEEEe---cCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcC--CCCEEEEEeCCC----------
Q 001184 546 TMLYS---ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT--TRNRILAAGEDN---------- 610 (1130)
Q Consensus 546 ~~~~s---~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg---------- 610 (1130)
.+.+. +||+++++... .+.+|.+.|+.+.+..+............+...+ .-.+++.++.+.
T Consensus 89 ~~S~TdGtyDGrylFVNDk---an~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l 165 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNM 165 (459)
T ss_dssp EEEEETTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSST
T ss_pred cccccCCccceeEEEEEcC---CCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccc
Confidence 45554 48999998753 4889999999999987766554444566666544 445787776532
Q ss_pred --------cEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCC
Q 001184 611 --------QIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD 653 (1130)
Q Consensus 611 --------~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~d 653 (1130)
.+.++|..+.+....+...+ ....+.++++|+++++.+.+
T Consensus 166 ~d~~~y~~~~t~ID~~tm~V~~QV~V~g---~ld~~~~s~dGK~af~TsyN 213 (459)
T d1fwxa2 166 EDVANYVNVFTAVDADKWEVAWQVLVSG---NLDNCDADYEGKWAFSTSYN 213 (459)
T ss_dssp TCGG-EEEEEEEEETTTTEEEEEEEESS---CCCCEEECSSSSEEEEEESC
T ss_pred cchhhcceEEEEEecCCceEEEEeeeCC---ChhccccCCCCCEEEEEecc
Confidence 36788999998888777655 46789999999999988754
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.69 E-value=0.029 Score=54.70 Aligned_cols=254 Identities=9% Similarity=0.095 Sum_probs=147.9
Q ss_pred CcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCC
Q 001184 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGN 645 (1130)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~ 645 (1130)
..++.+.|+..+.....-.- ...+.-.+|..+.|+.-+ ...+.+||+++.+.++...... .|.--.|-.+ +
T Consensus 44 ~~~VvIidl~n~~~~~Rrpi----~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e---~VvfWkWis~-~ 114 (327)
T d1utca2 44 QAQVVIIDMNDPSNPIRRPI----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISL-N 114 (327)
T ss_dssp EEEEEEEETTSTTSCEEEEC----CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS---CCCEEEESSS-S
T ss_pred CceEEEEECCCCCcceeccc----chhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC---CcEEEEecCC-C
Confidence 56788999877654333222 122345789888777765 5689999999999999988766 4555566543 3
Q ss_pred EEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccc
Q 001184 646 LLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAA 725 (1130)
Q Consensus 646 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1130)
.|+..+ +..|+-|+++......+.++.+..
T Consensus 115 ~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~------------------------------------------------- 144 (327)
T d1utca2 115 TVALVT-DNAVYHWSMEGESQPVKMFDRHSS------------------------------------------------- 144 (327)
T ss_dssp EEEEEC-SSEEEEEESSSSCCCEEEEECCGG-------------------------------------------------
T ss_pred EEEEEc-CCceEEEcccCCCCchhhhhhccc-------------------------------------------------
Confidence 455554 457999998544222222211110
Q ss_pred cCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeee-------CCeEEeeecCC
Q 001184 726 RGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWS-------NGVQKLWKWNR 798 (1130)
Q Consensus 726 ~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-------dg~i~iw~~~~ 798 (1130)
-....|.....+++.++++..|= .|.+.+|..+.
T Consensus 145 ---------------------------------------L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er 185 (327)
T d1utca2 145 ---------------------------------------LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 185 (327)
T ss_dssp ---------------------------------------GTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT
T ss_pred ---------------------------------------ccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc
Confidence 01234445555555665554432 25666666544
Q ss_pred CCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCC---CEEEEEe----CCeEEEEECCCce---e--
Q 001184 799 TEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND---SYVMSAG----GGKVSLFNMMNFK---V-- 866 (1130)
Q Consensus 799 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg---~~la~~~----dg~i~iwd~~~~~---~-- 866 (1130)
....+ .++|......+.+..+. ++++.+. .++++|.++.... .
T Consensus 186 ~~sQ~-------------------------ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f 240 (327)
T d1utca2 186 KVSQP-------------------------IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF 240 (327)
T ss_dssp TEEEE-------------------------ECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCC
T ss_pred CcCcc-------------------------ccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCC
Confidence 21110 01232222222221111 1222222 3679999885421 1
Q ss_pred -EEE--Ee----CCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCC
Q 001184 867 -MTT--FM----SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDA 939 (1130)
Q Consensus 867 -~~~--~~----~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg 939 (1130)
.+. +. ...+-..++.+|+ .-.++..-+.-|.|++||++++.++..-+--.+.|..-+-..+..=++....+|
T Consensus 241 ~kk~vdi~fppea~~DFPvamqvs~-kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~G 319 (327)
T d1utca2 241 PKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKG 319 (327)
T ss_dssp CCEEEECCCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTS
T ss_pred cceeEEEECCccccCCcEEEEEeec-cCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCC
Confidence 111 11 1234467888888 666888899999999999999999988776677777666555555566666777
Q ss_pred cEEE
Q 001184 940 QLIF 943 (1130)
Q Consensus 940 ~i~v 943 (1130)
.|.-
T Consensus 320 qVl~ 323 (327)
T d1utca2 320 QVLS 323 (327)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 6543
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.63 E-value=0.016 Score=65.35 Aligned_cols=155 Identities=8% Similarity=0.113 Sum_probs=91.9
Q ss_pred cEEEEEeCCCcEEEEEeecCeEEEEEecCCC-----------------------------------CeeEEEEccCCCeE
Q 001184 888 NIIAIGMEDSTIQIYNVRVDEVKTKLKGHQK-----------------------------------HITGLAFSTNLNIL 932 (1130)
Q Consensus 888 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~-----------------------------------~V~~l~~s~dg~~L 932 (1130)
..++.++.+|.++++|..+++.+........ .-..++++|+...+
T Consensus 328 ~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~ 407 (573)
T d1kb0a2 328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV 407 (573)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred eeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCCccccccccCCCcceE
Confidence 4678888999999999999988765432110 01235778888888
Q ss_pred EEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCe
Q 001184 933 VSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPI 1012 (1130)
Q Consensus 933 ~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v 1012 (1130)
+....+....++.....+...........+ .......+ .++.-.....-+.+.-||+.+|+.+-...... +.
T Consensus 408 yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~-~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~----p~ 479 (573)
T d1kb0a2 408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSG---TGWNTAKF-FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS----PW 479 (573)
T ss_dssp EEEEEECCCEEEECTTCCTTCCCTTSTTGG---GTCCCCEE-ECSSCCCSCCEEEEEEEETTTTEEEEEEEESS----SC
T ss_pred EeeccccceeeecccccccccCCCCccccc---cccccccc-cccCCCCCCCcccEEEeCCCCCceEeeecCCC----CC
Confidence 877777766666655433211100000000 00000000 00000000112568889999999887766542 22
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCC
Q 001184 1013 SSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPS 1050 (1130)
Q Consensus 1013 ~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~ 1050 (1130)
.+-..+-.|.++++|+.||.++.+|.++|+.+-.+...
T Consensus 480 ~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~ 517 (573)
T d1kb0a2 480 NGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG 517 (573)
T ss_dssp CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECC
Confidence 22223446889999999999999999999999777643
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.60 E-value=0.0068 Score=64.98 Aligned_cols=280 Identities=8% Similarity=-0.009 Sum_probs=138.0
Q ss_pred EEEEEecCCCeEEEEEeCc-----C------eEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC
Q 001184 351 VSMDFHPFHHTLLVVGCGD-----G------EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1130)
Q Consensus 351 ~~v~fspdg~~llasg~~d-----g------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 419 (1130)
...+...+|+ +++.|+.+ + .+.+||..+++..... .....|.......++.+
T Consensus 23 ~~a~~~~~gk-v~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~----------------~~~~~~~~~~~~~~~~~ 85 (387)
T d1k3ia3 23 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT----------------VTVTKHDMFCPGISMDG 85 (387)
T ss_dssp EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE----------------EEECSCCCSSCEEEECT
T ss_pred EEEEEeeCCE-EEEEEeecCcccCCCCCceeEEEEEECCCCcEeecC----------------CCCCCcccceeEEEEec
Confidence 3444456776 66666642 1 3778999887653210 01223333445678999
Q ss_pred CCCEEEEEeCC-CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCC------CcEEEEecCCCeeeE
Q 001184 420 DGNFIGVAFTK-HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD------KLIRVWDLSGRKLFQ 492 (1130)
Q Consensus 420 dg~~las~~~d-~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d------~~v~iwd~~~~~~~~ 492 (1130)
||++++.|+.+ ..+.+||..+..-.. ...+.. ...-...+..+||+ +++.|+.+ ..+.+||.....-..
T Consensus 86 ~g~i~v~Gg~~~~~~~~yd~~~~~w~~-~~~~~~-~r~~~~~~~~~dG~--v~v~GG~~~~~~~~~~v~~yd~~~~~W~~ 161 (387)
T d1k3ia3 86 NGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQV-ARGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWTS 161 (387)
T ss_dssp TSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSS-CCSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEEE
T ss_pred CCcEEEeecCCCcceeEecCccCcccc-cccccc-cccccceeeecCCc--eeeeccccccccccceeeeecCCCCceee
Confidence 99999998765 589999998764321 112221 12234667788998 67777643 368899933322222
Q ss_pred ecC----------CCcCE----EEEeecccCCccEEEEEecCCcEEEEEccCCcceeee--------cCCCccEEEEEE-
Q 001184 493 FEG----------HEAPV----YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY--------DAPGLWCTTMLY- 549 (1130)
Q Consensus 493 ~~~----------h~~~v----~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~--------~~~~~~v~~~~~- 549 (1130)
+.. +...+ ....+ ...++..++.++.++.+.+++..+..-.... ......-.++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (387)
T d1k3ia3 162 LPNAKVNPMLTADKQGLYRSDNHAWLF-GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYD 240 (387)
T ss_dssp ETTSCSGGGCCCCTTGGGTTTCSCCEE-ECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEE
T ss_pred cCCCcccccccccccceeeccceeEEE-EeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEee
Confidence 211 00000 00001 0124455666665666666655443322110 000011122323
Q ss_pred ecCCCeEEEeeecCCC----CcEEEEeeCCC---CceeEEEec--ccCceeEEEEEcCCCCEEEEEeCC-----------
Q 001184 550 SADGSRLFSCGTSKEG----DSHLVEWNESE---GALKRTYIG--FRKKSAGVVQFDTTRNRILAAGED----------- 609 (1130)
Q Consensus 550 s~~~~~l~~~~~~~~~----~~~i~~wd~~~---~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d----------- 609 (1130)
..+++.++.++..... .....+.+... ......... .......+....++++.++.|+.+
T Consensus 241 ~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~ 320 (387)
T d1k3ia3 241 AVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPV 320 (387)
T ss_dssp TTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBC
T ss_pred ccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEe
Confidence 3456667766632111 11222222221 111111110 011122345566888988888743
Q ss_pred CcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeC
Q 001184 610 NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTA 652 (1130)
Q Consensus 610 g~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~ 652 (1130)
..+.+||..+.+-...-........-....+.+||+.++.|+.
T Consensus 321 ~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 321 FTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp CCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred ceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence 1478899887654322111111001123446789999998874
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.57 E-value=0.043 Score=53.48 Aligned_cols=230 Identities=11% Similarity=0.126 Sum_probs=145.4
Q ss_pred EEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCC
Q 001184 352 SMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKH 431 (1130)
Q Consensus 352 ~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~ 431 (1130)
+.-.+|..+ +||.=+ ..++.|+|+++.+.++... ....|..-.|-.+. .|+..+ +.
T Consensus 67 sAIMhP~~~-IiALra-g~~LQiFnletK~klks~~--------------------~~e~VvfWkWis~~-~L~lVT-~t 122 (327)
T d1utca2 67 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--------------------MTDDVTFWKWISLN-TVALVT-DN 122 (327)
T ss_dssp EEEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEE--------------------CSSCCCEEEESSSS-EEEEEC-SS
T ss_pred hhhcCCCCc-EEEEec-CCeEEEEehhHhhhhceEE--------------------cCCCcEEEEecCCC-EEEEEc-CC
Confidence 445678776 566654 4589999999988776321 23467777887654 555554 35
Q ss_pred eEEEEEecCCccceeeeeeecCC----CCeeEEEEecCCCceEEEEE--c----CCCcEEEEecCCCeeeEecCCCcCEE
Q 001184 432 LIHLYTYQGSNDLCQSLEIDAHV----GGVNDLAFSYPNKQLCIVTC--G----DDKLIRVWDLSGRKLFQFEGHEAPVY 501 (1130)
Q Consensus 432 ~i~vwd~~~~~~~~~~~~~~~h~----~~V~~i~~s~d~~~l~l~s~--s----~d~~v~iwd~~~~~~~~~~~h~~~v~ 501 (1130)
.|.-|++++... +.+.+..|. ..|-.-..+++.+.+ +++| . -.|.+.+|..+.+.-+.+.||.+.-.
T Consensus 123 aVYHW~~~g~s~--P~k~fdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~ 199 (327)
T d1utca2 123 AVYHWSMEGESQ--PVKMFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFA 199 (327)
T ss_dssp EEEEEESSSSCC--CEEEEECCGGGTTCEEEEEEECTTSCEE-EEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEE
T ss_pred ceEEEcccCCCC--chhhhhhcccccCceEEEEEECCCCCEE-EEEeEecCCCceeEEEEEEEeccCcCccccceeeeeE
Confidence 699999966443 333455554 356677778888853 2222 1 23678899988888889999987766
Q ss_pred EEeecccCCcc-EEEEEe---cCCcEEEEEccCCcc---e-----eeec----CCCccEEEEEEecCCCeEEEeeecCCC
Q 001184 502 SVCPHQKENIH-FIFSTA---VDGKIKAWLYDNVGS---R-----VDYD----APGLWCTTMLYSADGSRLFSCGTSKEG 565 (1130)
Q Consensus 502 ~~~~~~~~~~~-~l~s~s---~dg~i~vwd~~~~~~---~-----~~~~----~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1130)
.+.+....... ++..+. ..+.+++.++..... . ..+. ..+.-..++..++.-..+...+.
T Consensus 200 ~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK---- 275 (327)
T d1utca2 200 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---- 275 (327)
T ss_dssp EECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEET----
T ss_pred EEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEec----
Confidence 66554333222 333332 226788888865321 1 1111 12334567888888778877775
Q ss_pred CcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEE
Q 001184 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIK 613 (1130)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 613 (1130)
.|.|++||++++.++..-+-..+ .+...+-..+..-+++...+|.|.
T Consensus 276 ~G~i~lyDleTgt~i~~nRIs~~-~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 276 YGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp TSEEEEEETTTCCEEEEEECCSS-CEEEEEEETTTTEEEEEETTSEEE
T ss_pred CcEEEEEEcccccEEEEeecCCC-ceEEeccCCCCceEEEECCCCeEE
Confidence 89999999999998876654333 455444455545566666666654
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.57 E-value=0.012 Score=66.05 Aligned_cols=62 Identities=10% Similarity=0.026 Sum_probs=44.9
Q ss_pred CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCC
Q 001184 985 ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPS 1050 (1130)
Q Consensus 985 d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~ 1050 (1130)
.+.+.-+|+.+|+.+-+..... +..+-.++-.+.++++|+.||.++.+|.++|+.+-++...
T Consensus 443 ~G~l~AiD~~TG~~~W~~~~~~----~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~ 504 (571)
T d2ad6a1 443 MGQIRAFDLTTGKAKWTKWEKF----AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMP 504 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESS----CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred cccEEEeccCCCceeeEcCCCC----CCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECC
Confidence 3578889999999887765442 1111112234668888999999999999999999777643
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.55 E-value=0.05 Score=53.86 Aligned_cols=224 Identities=10% Similarity=0.041 Sum_probs=139.1
Q ss_pred cCCCccEEEEEEcCCCCEEEEE-eCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001184 406 KDSSISVSRVAWSPDGNFIGVA-FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1130)
Q Consensus 406 ~~h~~~V~~v~~spdg~~las~-~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd 484 (1130)
..+...+..++|.+..+.|... ..++.|+..++.++.... .+..-...+.++++..-+.. +.++-...+.|.+.+
T Consensus 32 ~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~---v~~~~~~~p~~iAvD~~~~~-lY~~d~~~~~I~~~~ 107 (263)
T d1npea_ 32 HIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAK 107 (263)
T ss_dssp EEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEE
T ss_pred ccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEE---EEEeccccccEEEEeccCCe-EEEeccCCCEEEEEe
Confidence 3445568889999887777665 456788888887654322 22233356889999876664 445666678999999
Q ss_pred cCCCeeeEec-CCCcCEEEEeecccCCccEEEEEecCCc--EEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeee
Q 001184 485 LSGRKLFQFE-GHEAPVYSVCPHQKENIHFIFSTAVDGK--IKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGT 561 (1130)
Q Consensus 485 ~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1130)
.+|.....+. ........++++|.. +.++.+-...+. |..-+++...........-.....+++.+.++.|..+-.
T Consensus 108 ~dg~~~~~l~~~~l~~p~~l~vdp~~-g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~ 186 (263)
T d1npea_ 108 MDGTQRRVLFDTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA 186 (263)
T ss_dssp TTSCSCEEEECSSCSSEEEEEEETTT-TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET
T ss_pred cCCceEEEEecccccCCcEEEEeccc-CcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeC
Confidence 6666544443 334678888887643 333334333233 444455544444433333446789999999888877642
Q ss_pred cCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeEEEeccCCCCCcceEEE
Q 001184 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRF 640 (1130)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~ 640 (1130)
+.+.|...++........+.+... + ..+++. +++|+... ..+.|...|..+++.+..+...... ....+++
T Consensus 187 ---~~~~I~~~~~~g~~~~~v~~~~~~-P-~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~-~~~gi~v 258 (263)
T d1npea_ 187 ---GTHRAECLNPAQPGRRKVLEGLQY-P-FAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQT-RLYGITI 258 (263)
T ss_dssp ---TTTEEEEEETTEEEEEEEEECCCS-E-EEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCC-CCCCEEE
T ss_pred ---CCCEEEEEECCCCCeEEEECCCCC-c-EEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCCC-CcceEEE
Confidence 367899999876554444444322 3 356664 45555554 6688999999988877666443322 4455555
Q ss_pred cC
Q 001184 641 NK 642 (1130)
Q Consensus 641 s~ 642 (1130)
.+
T Consensus 259 ~~ 260 (263)
T d1npea_ 259 AL 260 (263)
T ss_dssp EC
T ss_pred eC
Confidence 44
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.53 E-value=0.053 Score=58.50 Aligned_cols=248 Identities=13% Similarity=0.061 Sum_probs=134.5
Q ss_pred CEEEEEEecCCCeEEEEEeCcC----eEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 349 SVVSMDFHPFHHTLLVVGCGDG----EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 349 ~V~~v~fspdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
.+..+++||||++++++-+.+| .+++.|+.+|+.+.. .+.. .....++|++|++.|
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~------------------~i~~--~~~~~~~W~~D~~~~ 185 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD------------------VLER--VKFSCMAWTHDGKGM 185 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE------------------EEEE--ECSCCEEECTTSSEE
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc------------------cccc--ccccceEEcCCCCEE
Confidence 4556788999997666655444 599999999987642 1111 112468999999988
Q ss_pred EEEeCC----------------CeEEEEEecCCccceeeeeeecCC--CCeeEEEEecCCCceEEEEEc-CCCcEEEE--
Q 001184 425 GVAFTK----------------HLIHLYTYQGSNDLCQSLEIDAHV--GGVNDLAFSYPNKQLCIVTCG-DDKLIRVW-- 483 (1130)
Q Consensus 425 as~~~d----------------~~i~vwd~~~~~~~~~~~~~~~h~--~~V~~i~~s~d~~~l~l~s~s-~d~~v~iw-- 483 (1130)
.....+ ..|..|.+.+...-. ...+.... ..+..+..+.|++.+++.+.. .+....+|
T Consensus 186 ~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d-~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~ 264 (430)
T d1qfma1 186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED-ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYC 264 (430)
T ss_dssp EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEE
T ss_pred EEEEeccccCcccccccccCCcceEEEEECCCCcccc-ccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEe
Confidence 765432 257777776654321 11233332 346677889999963333332 23344444
Q ss_pred ecC-CC--------eeeEecCCCcCEEEEeecccCCccEEEEEe---cCCcEEEEEccCCcce--e-eecCCCccEEEEE
Q 001184 484 DLS-GR--------KLFQFEGHEAPVYSVCPHQKENIHFIFSTA---VDGKIKAWLYDNVGSR--V-DYDAPGLWCTTML 548 (1130)
Q Consensus 484 d~~-~~--------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~~--~-~~~~~~~~v~~~~ 548 (1130)
|.. .. ....+.........+.. .+ +.+++... .++.|...++...... . .+..+...+..-.
T Consensus 265 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~ 341 (430)
T d1qfma1 265 DLQQESNGITGILKWVKLIDNFEGEYDYVTN--EG-TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWV 341 (430)
T ss_dssp EGGGSSSSSCSSCCCEEEECSSSSCEEEEEE--ET-TEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEE
T ss_pred eCCCcccccccccceeEeecccccceEEEec--CC-ceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeE
Confidence 421 11 11122222233332221 11 12333322 2356666666654332 2 2233333454445
Q ss_pred EecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEe----CCCcEEEEeCCCCce
Q 001184 549 YSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG----EDNQIKFWDMDNVNM 622 (1130)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~vwd~~~~~~ 622 (1130)
+...+.+|+.... .++...|++++..++......... ...+..+...++...+...- .-.+++-+|+.+++.
T Consensus 342 ~~~~~~~lvl~~~-~~~~~~l~v~~~~~~~~~~~~~~~-~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 342 ACVRSNFLVLCYL-HDVKNTLQLHDLATGALLKIFPLE-VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp EEETTTEEEEEEE-ETTEEEEEEEETTTCCEEEEECCC-SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred EEEECCEEEEEEE-cCCEeEEEEEECCCCcEEEecCCC-CceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 5555666665542 245678999999888776554432 33455555455555443322 236788899988754
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.52 E-value=0.0048 Score=63.88 Aligned_cols=250 Identities=11% Similarity=0.061 Sum_probs=148.9
Q ss_pred cCCCEEEEEe--CCeEEEEECCCceeEEEEeCC-CCCeEEEEEeCC-CCcEEEEEeCCC------------------cEE
Q 001184 843 KNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSP-PPASTFLAFHPQ-DNNIIAIGMEDS------------------TIQ 900 (1130)
Q Consensus 843 ~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~sp~-~~~~lasg~~dg------------------~v~ 900 (1130)
+||+++.+.. +++|-+.|+.+.++.+..... ...+..+...++ ...+++.++.+. .+.
T Consensus 97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t 176 (459)
T d1fwxa2 97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 176 (459)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence 4899999987 688999999999987766543 345676776542 345666665532 366
Q ss_pred EEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCC---------------cEEEEEC-------------------
Q 001184 901 IYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDA---------------QLIFWNT------------------- 946 (1130)
Q Consensus 901 iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg---------------~i~vwd~------------------- 946 (1130)
++|..+.+....+..- +....+++++||+++++.+.+. .+.+++.
T Consensus 177 ~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~ 255 (459)
T d1fwxa2 177 AVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 255 (459)
T ss_dssp EEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCce
Confidence 7888888877665532 3466899999999999887532 1333332
Q ss_pred ----CCCcc-cceeeEeccCCCCCCCeEEEEEcCCCcEEEEEc--CCcEEEEECCCcee--------eeeeecCCCCCCC
Q 001184 947 ----DTWEK-RKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--ETQLAIYDGSKMEC--------IRQWVPQDVLSSP 1011 (1130)
Q Consensus 947 ----~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d~~i~v~d~~~~~~--------~~~~~~~~~~~~~ 1011 (1130)
..... .....+..+ ...-.+.++|||++++++. +.++.|+|++.... ...+.+.....-.
T Consensus 256 VVD~~~~~~~~v~~yIPVp-----KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglg 330 (459)
T d1fwxa2 256 VVDGRKEASSLFTRYIPIA-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG 330 (459)
T ss_dssp EEECSGG--CSSEEEEEEE-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSC
T ss_pred eecccccCCcceeEEEecC-----CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcC
Confidence 21100 001111222 2234578999999999963 88999999864221 1111111112344
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCc----------ccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEE
Q 001184 1012 ISSAAYSCNSQLIYATFTDGSIGVFDADSL----------RLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVG 1081 (1130)
Q Consensus 1012 v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 1081 (1130)
-..-+|+..|....+-.-|..|.-|++... ..+.++..|... +|...+..-.-.| +|++|++.
T Consensus 331 PLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~------gh~~~~~g~t~~~-dgk~l~~~ 403 (459)
T d1fwxa2 331 PLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQP------GHLKTVMGETLDA-TNDWLVCL 403 (459)
T ss_dssp EEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCE------EEEEETTTTSTTC-CSSEEEEE
T ss_pred ccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCC------CCCccCcCCcCCC-CCCEEEEe
Confidence 567789988865555558999999998643 333344332211 1100000001122 57788887
Q ss_pred eC---CC----------cEEEEeCCCCccCCcccccC
Q 001184 1082 LT---DG----------SVKVIEPSETERKWGVAVPV 1105 (1130)
Q Consensus 1082 ~~---Dg----------~v~vW~~~~~~~~w~~~~p~ 1105 (1130)
.. |+ +-.+.|++.++++-.+..|.
T Consensus 404 nk~skdrfl~vgpl~pe~~qlidisg~~m~l~~d~p~ 440 (459)
T d1fwxa2 404 SKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHDGPT 440 (459)
T ss_dssp ESCCTTSSCCCCSSCCEEEEEEECSSSSCEEEEEEEE
T ss_pred cccccccccCCCCCCCccceEEEcCCCeeEEEeccCC
Confidence 63 33 24578888777665555554
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.50 E-value=0.048 Score=61.10 Aligned_cols=190 Identities=12% Similarity=0.031 Sum_probs=109.3
Q ss_pred EEEEcCCCcEEEEe-c-CCCeeeEecCCCc----CE-------EEEeecccCCccEEEEEecCCcEEEEEccCCcceeee
Q 001184 471 IVTCGDDKLIRVWD-L-SGRKLFQFEGHEA----PV-------YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY 537 (1130)
Q Consensus 471 l~s~s~d~~v~iwd-~-~~~~~~~~~~h~~----~v-------~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 537 (1130)
.++.+.++.|.-.| . +|+.+-++..... .. ..+++. +..++.++.|+.+.-.|.++++.....
T Consensus 66 yv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~----~~~i~~~~~~g~l~alda~tG~~~w~~ 141 (571)
T d2ad6a1 66 YVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG----AGQIVKKQANGHLLALDAKTGKINWEV 141 (571)
T ss_dssp EEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE----TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee----CCeEEEEeCCCcEEeeehhhhhhhccc
Confidence 33333466777777 4 5888877642110 00 112221 146778888999888899988876654
Q ss_pred cCCCc----cEEEEEEecCCCeEEEeeec--CCCCcEEEEeeCCCCceeEEEecccC-----------------------
Q 001184 538 DAPGL----WCTTMLYSADGSRLFSCGTS--KEGDSHLVEWNESEGALKRTYIGFRK----------------------- 588 (1130)
Q Consensus 538 ~~~~~----~v~~~~~s~~~~~l~~~~~~--~~~~~~i~~wd~~~~~~~~~~~~~~~----------------------- 588 (1130)
..... .+++--.-.++. ++.+... ....+.|+-+|..+|+.+..+.....
T Consensus 142 ~~~~~~~~~~~t~~p~v~~~~-vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (571)
T d2ad6a1 142 EVCDPKVGSTLTQAPFVAKDT-VLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLG 220 (571)
T ss_dssp ECCCGGGTCBCCSCCEEETTE-EEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHH
T ss_pred cccccccccceeecCeEeCCe-EEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCccccc
Confidence 32211 111111112333 3333321 11367899999999999887653211
Q ss_pred -------------ce-eEEEEEcCCCCEEEEEeC----------------CCcEEEEeCCCCceeEEEeccCCCC-----
Q 001184 589 -------------KS-AGVVQFDTTRNRILAAGE----------------DNQIKFWDMDNVNMLTSTEAEGGLP----- 633 (1130)
Q Consensus 589 -------------~~-v~~~~~~~~~~~l~~~~~----------------dg~i~vwd~~~~~~~~~~~~~~~~~----- 633 (1130)
.. -...++.+....++.+.. ...+...|.++|+.+-.++...+..
T Consensus 221 ~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~ 300 (571)
T d2ad6a1 221 TKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAG 300 (571)
T ss_dssp HHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCC
T ss_pred ccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCcccccccc
Confidence 01 122466777777666543 3468888999999888777543311
Q ss_pred --CcceEEEcCCCC---EEEEEeCCCcEEEEEcCCCc
Q 001184 634 --SLPRLRFNKEGN---LLVVTTADQGIKILANADGL 665 (1130)
Q Consensus 634 --~i~~v~~s~~~~---~l~~~~~dg~i~iw~~~~~~ 665 (1130)
.........+++ .++.++.+|.+.++|..+++
T Consensus 301 ~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~ 337 (571)
T d2ad6a1 301 VNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGN 337 (571)
T ss_dssp CCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred ccccceeeeeccCccccceeeccccceEEEEecCCCc
Confidence 111112222343 46778899999999998884
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.46 E-value=0.048 Score=54.01 Aligned_cols=222 Identities=9% Similarity=0.008 Sum_probs=137.1
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
+...+.+++|.+.++++..+-..++.|+..+++.+.... +....-..+.++++..-+..|.
T Consensus 34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~-------------------v~~~~~~~p~~iAvD~~~~~lY 94 (263)
T d1npea_ 34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT-------------------IIRQDLGSPEGIALDHLGRTIF 94 (263)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE-------------------EECTTCCCEEEEEEETTTTEEE
T ss_pred CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEE-------------------EEEeccccccEEEEeccCCeEE
Confidence 344688899999888766665667889888887655432 2223335688999987666665
Q ss_pred EE-eCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCeeeEec-CCCcCEE
Q 001184 426 VA-FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFE-GHEAPVY 501 (1130)
Q Consensus 426 s~-~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~~~~~-~h~~~v~ 501 (1130)
.+ ...+.|.+.++....... .+.........+++.|.... ++.+-...+..+||. .+|.....+. ..-....
T Consensus 95 ~~d~~~~~I~~~~~dg~~~~~---l~~~~l~~p~~l~vdp~~g~-ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~ 170 (263)
T d1npea_ 95 WTDSQLDRIEVAKMDGTQRRV---LFDTGLVNPRGIVTDPVRGN-LYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPN 170 (263)
T ss_dssp EEETTTTEEEEEETTSCSCEE---EECSSCSSEEEEEEETTTTE-EEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEE
T ss_pred EeccCCCEEEEEecCCceEEE---EecccccCCcEEEEecccCc-EEEeecCCCCcEEEEecCCCCCceeeeeecccccc
Confidence 44 456789999987654321 12233456899999998874 333433333445554 6665544443 2234567
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeE
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKR 581 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1130)
.+++.+..+ .+.++-...+.|...+++.......+..... ..++++. +.+|..... +.+.|...|..+++.+.
T Consensus 171 glaiD~~~~-~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~-P~~lav~--~~~lYwtd~---~~~~I~~~~~~~g~~~~ 243 (263)
T d1npea_ 171 GLTFDAFSS-QLCWVDAGTHRAECLNPAQPGRRKVLEGLQY-PFAVTSY--GKNLYYTDW---KTNSVIAMDLAISKEMD 243 (263)
T ss_dssp EEEEETTTT-EEEEEETTTTEEEEEETTEEEEEEEEECCCS-EEEEEEE--TTEEEEEET---TTTEEEEEETTTTEEEE
T ss_pred eEEEeecCc-EEEEEeCCCCEEEEEECCCCCeEEEECCCCC-cEEEEEE--CCEEEEEEC---CCCEEEEEECCCCccce
Confidence 888865432 3334445678888888876555444444343 3567765 556665532 26789999988888777
Q ss_pred EEecccCceeEEEEEc
Q 001184 582 TYIGFRKKSAGVVQFD 597 (1130)
Q Consensus 582 ~~~~~~~~~v~~~~~~ 597 (1130)
.+..........+.+.
T Consensus 244 ~~~~~~~~~~~gi~v~ 259 (263)
T d1npea_ 244 TFHPHKQTRLYGITIA 259 (263)
T ss_dssp EECCSSCCCCCCEEEE
T ss_pred EECCCCCCCcceEEEe
Confidence 7654443333344433
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.41 E-value=0.01 Score=63.57 Aligned_cols=259 Identities=12% Similarity=0.074 Sum_probs=132.4
Q ss_pred ccccCCCCcceecc-CCCCCCCceeEEEEecCCCEEEEEe--CCeEEEEECCCceeEEEEeCC-CCCeEEEEEeCCCCcE
Q 001184 814 QHWQPSNGLLMTND-VPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSP-PPASTFLAFHPQDNNI 889 (1130)
Q Consensus 814 ~~w~~~~~~~~~~~-~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~sp~~~~~ 889 (1130)
.+||+.++...... ....+.......++.+||++++.|+ ...+.+||..+..-...-... ...-.+++..+ |+++
T Consensus 55 ~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~-dG~v 133 (387)
T d1k3ia3 55 SSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRV 133 (387)
T ss_dssp EEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCE
T ss_pred EEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeec-CCce
Confidence 35666665533211 1112333445678889999999987 367999999886654322211 12234567777 7888
Q ss_pred EEEEeCC------CcEEEEEeecCeEEEEEe---------cCC-----CCeeEEEEccCCCeEEEEeCCCcEEEEECCCC
Q 001184 890 IAIGMED------STIQIYNVRVDEVKTKLK---------GHQ-----KHITGLAFSTNLNILVSSGSDAQLIFWNTDTW 949 (1130)
Q Consensus 890 lasg~~d------g~v~iwd~~~~~~~~~l~---------~h~-----~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~ 949 (1130)
++.|+.+ ..+.+||..+.+-...-. .+. +.-..+...++|+.++.++.++.+.+++..+.
T Consensus 134 ~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~ 213 (387)
T d1k3ia3 134 FTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG 213 (387)
T ss_dssp EEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred eeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccC
Confidence 8888753 368999988765322110 010 01112334456777777777777777777765
Q ss_pred cccceeeEeccCCCCC--CCeEEEE-EcCCCcEEEEEc---------CCcEEEEECCC---ceeeeeeecCCCCCCCeEE
Q 001184 950 EKRKSIAIQLPAGKLP--VGETRVQ-FHSDQVRLLVNH---------ETQLAIYDGSK---MECIRQWVPQDVLSSPISS 1014 (1130)
Q Consensus 950 ~~~~~~~~~~~~~~~~--~~v~~~~-~s~d~~~l~~~~---------d~~i~v~d~~~---~~~~~~~~~~~~~~~~v~~ 1014 (1130)
................ ..-.++. -..+++.++.+. .....+.+... ................-.+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~ 293 (387)
T d1k3ia3 214 DVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHT 293 (387)
T ss_dssp EEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCE
T ss_pred cEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccce
Confidence 4322211111111111 1112222 234666666631 11233333322 1111111111111222345
Q ss_pred EEECCCCCEEEEEeCC-----------CcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeC
Q 001184 1015 AAYSCNSQLIYATFTD-----------GSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLT 1083 (1130)
Q Consensus 1015 v~~s~dg~~l~t~~~D-----------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 1083 (1130)
....+||++++.|+.+ .++.+||..+.+.... .. ...+. ..|+.. + ..+ |+++|+.|+.
T Consensus 294 ~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~-~~-~~~~R---~~Hs~a---~-l~~-dG~v~v~GG~ 363 (387)
T d1k3ia3 294 SVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQ-NP-NSIVR---VYHSIS---L-LLP-DGRVFNGGGG 363 (387)
T ss_dssp EEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEEC-CC-CSSCC---CTTEEE---E-ECT-TSCEEEEECC
T ss_pred eeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEEC-CC-CCCcc---cceEEE---E-ECC-CCEEEEEeCC
Confidence 6667899999998853 1478899887754322 11 11111 123222 1 123 6889999884
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.41 E-value=0.026 Score=63.59 Aligned_cols=61 Identities=13% Similarity=0.160 Sum_probs=45.5
Q ss_pred CcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCC
Q 001184 986 TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPS 1050 (1130)
Q Consensus 986 ~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~ 1050 (1130)
+.+.-||+.+|+.+-...... ++.+-.++-.|.+++.|+.||.++.+|.++|+.+-++...
T Consensus 453 G~l~A~D~~TG~~~W~~~~~~----~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~ 513 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKMERF----AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIP 513 (596)
T ss_dssp EEEEEECTTTCCEEEEEEESS----CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred ceEEEEeCCCCceecccCCCC----CCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECC
Confidence 578889999998876654432 2222233446788889999999999999999999887643
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.37 E-value=0.14 Score=57.37 Aligned_cols=61 Identities=16% Similarity=0.220 Sum_probs=46.8
Q ss_pred CcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCC
Q 001184 986 TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPS 1050 (1130)
Q Consensus 986 ~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~ 1050 (1130)
+.+.-+|+.+|+.+-+...+. ++.+-.++..|.++++|+.||.++.+|.++|+.+-++...
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~----p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~ 526 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHL----PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG 526 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESS----CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CeEEEEcCCCCcEEeecCCCC----CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECC
Confidence 568889999999888776542 3332233456788889999999999999999999887643
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.35 E-value=0.023 Score=63.69 Aligned_cols=149 Identities=8% Similarity=0.050 Sum_probs=93.5
Q ss_pred cEEEEEeecCeEEEEEecCCCCeeE---------EEEccCC---CeEEEEeCCCcEEEEECCCCcccceeeEec------
Q 001184 898 TIQIYNVRVDEVKTKLKGHQKHITG---------LAFSTNL---NILVSSGSDAQLIFWNTDTWEKRKSIAIQL------ 959 (1130)
Q Consensus 898 ~v~iwd~~~~~~~~~l~~h~~~V~~---------l~~s~dg---~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~------ 959 (1130)
.|.-.|+++++.+-.++.....++. +....+| ..++.++.+|.+.++|..+++.........
T Consensus 271 sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~ 350 (560)
T d1kv9a2 271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK 350 (560)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred eeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccc
Confidence 4666788889887766543322221 2222344 367778889999999999987643221100
Q ss_pred ------------------------cCCCCCCCeEEEEEcCCCcEEEEEc-------------------------------
Q 001184 960 ------------------------PAGKLPVGETRVQFHSDQVRLLVNH------------------------------- 984 (1130)
Q Consensus 960 ------------------------~~~~~~~~v~~~~~s~d~~~l~~~~------------------------------- 984 (1130)
+...-...-...+++|+..++++..
T Consensus 351 ~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (560)
T d1kv9a2 351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATD 430 (560)
T ss_dssp ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCC
T ss_pred cChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccC
Confidence 0000000112456777777666521
Q ss_pred ------CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCC
Q 001184 985 ------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPS 1050 (1130)
Q Consensus 985 ------d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~ 1050 (1130)
.+.+.-+|+.+|+.+-+..... +..+-.++-.|.++++|+.||.++.+|.++|+.+-++...
T Consensus 431 ~p~~~~~G~l~A~D~~tGk~~W~~~~~~----~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~ 498 (560)
T d1kv9a2 431 VPAAVVSGALLAWDPVKQKAAWKVPYPT----HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (560)
T ss_dssp CCGGGCEEEEEEEETTTTEEEEEEEESS----SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCCcccccceEEEeCCCCeEeeeccCCC----CCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECC
Confidence 1357789999999988766542 2222233445778889999999999999999999887643
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.27 E-value=0.08 Score=59.09 Aligned_cols=82 Identities=10% Similarity=0.131 Sum_probs=54.3
Q ss_pred CeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCe-eEEEEccCCC-e
Q 001184 854 GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHI-TGLAFSTNLN-I 931 (1130)
Q Consensus 854 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~s~dg~-~ 931 (1130)
|.|.-||+.+++.+-........... .++- .+.+++.|+.||.++-+|..+|+.+-+++-..+.. .-+.+..||+ +
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~~~~gg-~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqy 515 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPTHWNGG-TLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY 515 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCC-EEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred cceEEEeCCCCeEeeeccCCCCCCCc-eeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence 56888999999998876633221111 1222 34577789999999999999999998876432211 1256667886 5
Q ss_pred EEEEeC
Q 001184 932 LVSSGS 937 (1130)
Q Consensus 932 L~s~s~ 937 (1130)
++..+.
T Consensus 516 v~v~aG 521 (560)
T d1kv9a2 516 VAIMAG 521 (560)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 554443
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.26 E-value=0.069 Score=59.88 Aligned_cols=80 Identities=11% Similarity=0.121 Sum_probs=53.8
Q ss_pred CeEEEEECCCceeEEEEeCCCCCe-EEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCe-eEEEEccCCC-
Q 001184 854 GKVSLFNMMNFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHI-TGLAFSTNLN- 930 (1130)
Q Consensus 854 g~i~iwd~~~~~~~~~~~~~~~~i-~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~s~dg~- 930 (1130)
|.|.-||+.+++.+-..+...... -.++ - .+.+|++|+.||.++.+|.++|+.+-+++-..+.. .-+.|..||+
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p~~gg~ls--t-agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQ 533 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLT--T-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQ 533 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEE--E-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred ccEEEeCCCCCceEeeecCCCCCCCceEE--E-cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence 678899999999988776432211 1232 2 45678789999999999999999998876432211 1155666886
Q ss_pred eEEEEe
Q 001184 931 ILVSSG 936 (1130)
Q Consensus 931 ~L~s~s 936 (1130)
+++..+
T Consensus 534 Yv~v~~ 539 (573)
T d1kb0a2 534 YVSVAV 539 (573)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 444433
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.24 E-value=0.16 Score=56.81 Aligned_cols=195 Identities=13% Similarity=0.071 Sum_probs=111.1
Q ss_pred EEEEcCCCcEEEEe--cCCCeeeEecCCCc----------CE-EEEeeccc--CCccEEEEEecCCcEEEEEccCCccee
Q 001184 471 IVTCGDDKLIRVWD--LSGRKLFQFEGHEA----------PV-YSVCPHQK--ENIHFIFSTAVDGKIKAWLYDNVGSRV 535 (1130)
Q Consensus 471 l~s~s~d~~v~iwd--~~~~~~~~~~~h~~----------~v-~~~~~~~~--~~~~~l~s~s~dg~i~vwd~~~~~~~~ 535 (1130)
+++++.++.+...| .+|+.+-++..... .+ +.+++... .....++.++.|+.|.-.|.++++...
T Consensus 66 y~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~w 145 (596)
T d1w6sa_ 66 YIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVW 145 (596)
T ss_dssp EEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCceec
Confidence 34444445555555 35777766541110 01 22333322 223468888999999999999888877
Q ss_pred eecCCCccE-EEEEEec--CCCeEEEeeecC--CCCcEEEEeeCCCCceeEEEeccc-----------------------
Q 001184 536 DYDAPGLWC-TTMLYSA--DGSRLFSCGTSK--EGDSHLVEWNESEGALKRTYIGFR----------------------- 587 (1130)
Q Consensus 536 ~~~~~~~~v-~~~~~s~--~~~~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~----------------------- 587 (1130)
.+....... ..+.-.| -+..++++.... ...|.|+-+|..+|+.+-.+....
T Consensus 146 ~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~ 225 (596)
T d1w6sa_ 146 KVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGL 225 (596)
T ss_dssp EEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTH
T ss_pred cccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCcccccccccccccccccccccc
Confidence 664321100 0011011 133455543211 235899999999999988765321
Q ss_pred --------------CceeEEEEEcCCCCEEEEEeC----------------CCcEEEEeCCCCceeEEEeccCCCC----
Q 001184 588 --------------KKSAGVVQFDTTRNRILAAGE----------------DNQIKFWDMDNVNMLTSTEAEGGLP---- 633 (1130)
Q Consensus 588 --------------~~~v~~~~~~~~~~~l~~~~~----------------dg~i~vwd~~~~~~~~~~~~~~~~~---- 633 (1130)
.......++.+..+.++.+.. ...|...|+++|+.+-.++...+..
T Consensus 226 ~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d 305 (596)
T d1w6sa_ 226 GTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYA 305 (596)
T ss_dssp HHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCC
T ss_pred ccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccccCCc
Confidence 001123566777777776543 2457888999999888776543311
Q ss_pred ---CcceEEE-cCCC---CEEEEEeCCCcEEEEEcCCCc
Q 001184 634 ---SLPRLRF-NKEG---NLLVVTTADQGIKILANADGL 665 (1130)
Q Consensus 634 ---~i~~v~~-s~~~---~~l~~~~~dg~i~iw~~~~~~ 665 (1130)
...-+.. ..+| ..++....+|.+.++|-.++.
T Consensus 306 ~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~ 344 (596)
T d1w6sa_ 306 GVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA 344 (596)
T ss_dssp CCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred cccceeeeeccccccccccceeccccccceeeecCCCCc
Confidence 1111111 2344 367778899999999998883
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.22 E-value=0.12 Score=51.02 Aligned_cols=238 Identities=11% Similarity=0.014 Sum_probs=141.0
Q ss_pred eEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEe-CCCeEEEEEec
Q 001184 361 TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF-TKHLIHLYTYQ 439 (1130)
Q Consensus 361 ~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~-~d~~i~vwd~~ 439 (1130)
+||++- ...|+-.++.+..... +......+.+++|.+..+.|.-.. .++.|.-.++.
T Consensus 3 fLl~s~--~~~I~~~~l~~~~~~~--------------------~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~ 60 (266)
T d1ijqa1 3 YLFFTN--RHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLD 60 (266)
T ss_dssp EEEEEC--BSSEEEEETTSCCCEE--------------------EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-
T ss_pred EEEEEC--CCeEEEEECCCCccee--------------------eeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEec
Confidence 345543 3468888987654332 223344678999999888776654 45667766665
Q ss_pred CCccceee-eeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeE-ecCCCcCEEEEeecccCCccEEEEE
Q 001184 440 GSNDLCQS-LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQ-FEGHEAPVYSVCPHQKENIHFIFST 517 (1130)
Q Consensus 440 ~~~~~~~~-~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~ 517 (1130)
........ ..+......+..+++.+-++. +..+-...+.|.+.+.+|..... +.........+++++.. +.++++.
T Consensus 61 ~~~~~~~~~~~~~~~~~~p~glAvD~~~~~-lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~-g~ly~~~ 138 (266)
T d1ijqa1 61 RAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH-GFMYWTD 138 (266)
T ss_dssp -------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTT-TEEEEEE
T ss_pred CCCCCcceEEEEeCCCCCcceEEEeeccce-EEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEccc-CeEEEec
Confidence 42211111 112233355778999887775 44556677889999966665433 44445667888887643 3344443
Q ss_pred -ecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccC-ceeEEEE
Q 001184 518 -AVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRK-KSAGVVQ 595 (1130)
Q Consensus 518 -s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~ 595 (1130)
+..+.|...+++...........-.....+++.+.++.|+.+-. ..+.|...++.............. .....++
T Consensus 139 ~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~---~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~la 215 (266)
T d1ijqa1 139 WGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDEKRLAHPFSLA 215 (266)
T ss_dssp CSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEECTTTTSSEEEEE
T ss_pred cCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecC---CcCEEEEEECCCCCEEEEEeCCCcccccEEEE
Confidence 23456666677655444444434456789999999988888743 267888888865544333333221 1233455
Q ss_pred EcCCCCEEEEE-eCCCcEEEEeCCCCceeEEEe
Q 001184 596 FDTTRNRILAA-GEDNQIKFWDMDNVNMLTSTE 627 (1130)
Q Consensus 596 ~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~ 627 (1130)
+. +.+|+.. ..++.|+..+..++.....+.
T Consensus 216 v~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~ 246 (266)
T d1ijqa1 216 VF--EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (266)
T ss_dssp EE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EE--CCEEEEEECCCCeEEEEECCCCcceEEEE
Confidence 54 3455554 466788888877776655554
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.18 E-value=0.031 Score=60.40 Aligned_cols=247 Identities=11% Similarity=0.052 Sum_probs=125.5
Q ss_pred CCCccEEEEEEcCCCCEEEEEe-C----CCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcC-----
Q 001184 407 DSSISVSRVAWSPDGNFIGVAF-T----KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD----- 476 (1130)
Q Consensus 407 ~h~~~V~~v~~spdg~~las~~-~----d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~----- 476 (1130)
++.-.+..+++|||++++|.+- . ...|+++|+.+|+.+.. .+.. .....++|++|++. ++.+.-.
T Consensus 122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~--~i~~--~~~~~~~W~~D~~~-~~Y~~~~~~~~~ 196 (430)
T d1qfma1 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLER--VKFSCMAWTHDGKG-MFYNAYPQQDGK 196 (430)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEEE--ECSCCEEECTTSSE-EEEEECCCCSSC
T ss_pred cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc--cccc--ccccceEEcCCCCE-EEEEEeccccCc
Confidence 3444556678999999998652 2 24799999999975542 2221 12357899999995 3333211
Q ss_pred ----------CCcEEEEe-cCC--CeeeEecCCCc--CEEEEeecccCCccEEEEEec---CCcEEEE--EccCCcce--
Q 001184 477 ----------DKLIRVWD-LSG--RKLFQFEGHEA--PVYSVCPHQKENIHFIFSTAV---DGKIKAW--LYDNVGSR-- 534 (1130)
Q Consensus 477 ----------d~~v~iwd-~~~--~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~---dg~i~vw--d~~~~~~~-- 534 (1130)
...|..|. -+. .-+..+..... .+..+.. +.++++++.... +....+| ++......
T Consensus 197 ~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~--s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~ 274 (430)
T d1qfma1 197 SDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL--SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGIT 274 (430)
T ss_dssp CSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC
T ss_pred ccccccccCCcceEEEEECCCCccccccccccccCCceEEeeec--cCCcceeeEEeeccCCccEEEEEeeCCCcccccc
Confidence 12466666 222 11233333333 3334433 455566654332 3344455 43322111
Q ss_pred -----e-eecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCce--eEEEecccCceeEEEEEcCCCCEEEEE
Q 001184 535 -----V-DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL--KRTYIGFRKKSAGVVQFDTTRNRILAA 606 (1130)
Q Consensus 535 -----~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~ 606 (1130)
. .......... .... +|..+...+.....++.|...++..... ...+..++...+..-.+...+++|+..
T Consensus 275 ~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~ 352 (430)
T d1qfma1 275 GILKWVKLIDNFEGEYD-YVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLC 352 (430)
T ss_dssp SSCCCEEEECSSSSCEE-EEEE-ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEE
T ss_pred cccceeEeecccccceE-EEec-CCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEE
Confidence 1 1111111222 2222 3334443332223367788787765432 234443333334433344445566654
Q ss_pred e-CCC--cEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeC----CCcEEEEEcCCC
Q 001184 607 G-EDN--QIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTA----DQGIKILANADG 664 (1130)
Q Consensus 607 ~-~dg--~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~ 664 (1130)
. .++ .|++++..++.......... ..+..+...++...+..... -.++.-+|+.++
T Consensus 353 ~~~~~~~~l~v~~~~~~~~~~~~~~~~--~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~ 415 (430)
T d1qfma1 353 YLHDVKNTLQLHDLATGALLKIFPLEV--GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (430)
T ss_dssp EEETTEEEEEEEETTTCCEEEEECCCS--SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred EEcCCEeEEEEEECCCCcEEEecCCCC--ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCC
Confidence 3 444 58899998887655543332 24444444555554443322 267777888776
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.05 E-value=0.18 Score=49.80 Aligned_cols=231 Identities=10% Similarity=0.021 Sum_probs=138.0
Q ss_pred EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCC----eee-EecCCC
Q 001184 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGR----KLF-QFEGHE 497 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~----~~~-~~~~h~ 497 (1130)
+|+.+.. ..|+..++.+..... +......+.+++|.+..+. +..+-..++.|.--+..+. ... .+....
T Consensus 3 fLl~s~~-~~I~~~~l~~~~~~~----~~~~~~~~~~id~d~~~~~-lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~ 76 (266)
T d1ijqa1 3 YLFFTNR-HEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (266)
T ss_dssp EEEEECB-SSEEEEETTSCCCEE----EECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEECC-CeEEEEECCCCccee----eeCCCCceEEEEEEeCCCE-EEEEECCCCEEEEEEecCCCCCcceEEEEeCCC
Confidence 3444433 348888887754322 2334556789999988774 3344445666665553321 112 222233
Q ss_pred cCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCC
Q 001184 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577 (1130)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1130)
..+..+++.+..+ .+.++-...++|.+.+++.................+++.|...++..... ...+.|...++...
T Consensus 77 ~~p~glAvD~~~~-~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~--~~~~~I~r~~~dGs 153 (266)
T d1ijqa1 77 QAPDGLAVDWIHS-NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGV 153 (266)
T ss_dssp SCCCEEEEETTTT-EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTSC
T ss_pred CCcceEEEeeccc-eEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEecc--CCCcceeEeccCCC
Confidence 4566777765443 45555566788999999877666655555567889999997777776542 12457777776543
Q ss_pred ceeEEEecccCceeEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcE
Q 001184 578 ALKRTYIGFRKKSAGVVQFDTTRNRILAA-GEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGI 656 (1130)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i 656 (1130)
. ...+....-.....+++.+.+++|+.+ ...+.|...++....................+++.. +.+..+-..++.|
T Consensus 154 ~-~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~-~~ly~td~~~~~I 231 (266)
T d1ijqa1 154 D-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAI 231 (266)
T ss_dssp C-EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEE
T ss_pred c-eecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEEC-CEEEEEECCCCeE
Confidence 3 333333232356789999888877776 456789999987665544444433333345677663 3334443466777
Q ss_pred EEEEcCCC
Q 001184 657 KILANADG 664 (1130)
Q Consensus 657 ~iw~~~~~ 664 (1130)
...+..++
T Consensus 232 ~~~~~~~g 239 (266)
T d1ijqa1 232 FSANRLTG 239 (266)
T ss_dssp EEEETTTC
T ss_pred EEEECCCC
Confidence 77766555
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.85 E-value=0.55 Score=52.24 Aligned_cols=191 Identities=12% Similarity=0.040 Sum_probs=107.7
Q ss_pred EEEEEcCCCcEEEEe-cCCCeeeEecCCC--------cCE-EEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecC
Q 001184 470 CIVTCGDDKLIRVWD-LSGRKLFQFEGHE--------APV-YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA 539 (1130)
Q Consensus 470 ~l~s~s~d~~v~iwd-~~~~~~~~~~~h~--------~~v-~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 539 (1130)
.|+.++.++.|.-.| .+|+.+-++.... ..+ ..+++. +..++.++.|+.+.-.|..+++.......
T Consensus 70 ~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~----~~~i~~~t~~~~l~alda~tG~~~W~~~~ 145 (582)
T d1flga_ 70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY----GDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp EEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE----TTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred EEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEe----CCceEEecCCCeEEEecccccceeeeecc
Confidence 466677788888888 8888887764211 001 112221 24677788899888888888877654322
Q ss_pred CCcc----E--EEEEEec--CCCeEEEeeecC---CCCcEEEEeeCCCCceeEEEecccC--------------------
Q 001184 540 PGLW----C--TTMLYSA--DGSRLFSCGTSK---EGDSHLVEWNESEGALKRTYIGFRK-------------------- 588 (1130)
Q Consensus 540 ~~~~----v--~~~~~s~--~~~~l~~~~~~~---~~~~~i~~wd~~~~~~~~~~~~~~~-------------------- 588 (1130)
.... . .-+.+.+ .+..++..+... ...+.|.-+|.++|+.+-.+.....
T Consensus 146 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~ 225 (582)
T d1flga_ 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred cCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCcccccccccccccccccccc
Confidence 1110 0 0011111 133333332111 2256788999999988776643211
Q ss_pred -------------------c-eeEEEEEcCCCCEEEEEeC------------------------CCcEEEEeCCCCceeE
Q 001184 589 -------------------K-SAGVVQFDTTRNRILAAGE------------------------DNQIKFWDMDNVNMLT 624 (1130)
Q Consensus 589 -------------------~-~v~~~~~~~~~~~l~~~~~------------------------dg~i~vwd~~~~~~~~ 624 (1130)
. .....++.+..++++.+.. ...+...|..+++..-
T Consensus 226 ~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W 305 (582)
T d1flga_ 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhhh
Confidence 0 1123567777777766531 2347778899999887
Q ss_pred EEeccCCCCCcce-------EEEc-CCC---CEEEEEeCCCcEEEEEcCCC
Q 001184 625 STEAEGGLPSLPR-------LRFN-KEG---NLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 625 ~~~~~~~~~~i~~-------v~~s-~~~---~~l~~~~~dg~i~iw~~~~~ 664 (1130)
.++...+...... +.+. .++ ..++..+.++.+.++|-.++
T Consensus 306 ~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG 356 (582)
T d1flga_ 306 FYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG 356 (582)
T ss_dssp EEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred cccccccccccccccccccccccccccccccceeEeecccccEEeecccCC
Confidence 7765443211111 1111 123 25666788899999998887
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=96.66 E-value=0.28 Score=49.93 Aligned_cols=267 Identities=10% Similarity=0.156 Sum_probs=143.5
Q ss_pred cCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeC----C-CCcEEEEEe--CC--CcEEEEEeec-CeEEE
Q 001184 843 KNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHP----Q-DNNIIAIGM--ED--STIQIYNVRV-DEVKT 911 (1130)
Q Consensus 843 ~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp----~-~~~~lasg~--~d--g~v~iwd~~~-~~~~~ 911 (1130)
|+..+++... .+-|.+||++ |+.+..+. .+.+..+..-. . ...-+++++ .+ .+|.+|.+.. ...+.
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~ 114 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence 3445555555 4569999996 66666654 45666665442 1 222344444 22 3688888863 33344
Q ss_pred EEecC-------CCCeeEEEE--ccC-CC-eEEEEeCCCcEEEEECCCCc---ccceeeEeccCCCCCCCeEEEEEcCCC
Q 001184 912 KLKGH-------QKHITGLAF--STN-LN-ILVSSGSDAQLIFWNTDTWE---KRKSIAIQLPAGKLPVGETRVQFHSDQ 977 (1130)
Q Consensus 912 ~l~~h-------~~~V~~l~~--s~d-g~-~L~s~s~Dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~d~ 977 (1130)
.+... ...+..+|+ ++. |. +++....+|.+..|.+.... ........+ ..+..+..+.+.++.
T Consensus 115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f---~~~~q~EGCVvDde~ 191 (353)
T d1h6la_ 115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF---KMNSQTEGMAADDEY 191 (353)
T ss_dssp ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE---ECSSCEEEEEEETTT
T ss_pred cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc---CCCCccceEEEeCCC
Confidence 44321 124677777 554 44 56667778999988874322 222222222 223678899999998
Q ss_pred cEEEEEc-CCcEEEEECC-----CceeeeeeecCCCCCCCeEEEEEC--CCCC-EEEEEe-CCCcEEEEeCCCc-ccccc
Q 001184 978 VRLLVNH-ETQLAIYDGS-----KMECIRQWVPQDVLSSPISSAAYS--CNSQ-LIYATF-TDGSIGVFDADSL-RLRCR 1046 (1130)
Q Consensus 978 ~~l~~~~-d~~i~v~d~~-----~~~~~~~~~~~~~~~~~v~~v~~s--~dg~-~l~t~~-~Dg~i~vwd~~~~-~~~~~ 1046 (1130)
..|.++. +..+..++.. .+..+....+ ......+..++.- .++. ||++++ .+++..|||..+. +.+..
T Consensus 192 ~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g-~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~ 270 (353)
T d1h6la_ 192 GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG-RHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVAD 270 (353)
T ss_dssp TEEEEEETTTEEEEEESSTTSCSCCEEEEECSS-SSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred CcEEEecCccceEEEEeccCCCccceeeecccC-ccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccce
Confidence 8888874 5556556553 1222222221 1235667777753 3444 666666 5788999998763 44444
Q ss_pred cCCCc-ccccCCCCCceeeeEEEEEcCCCC-CEEEEEeCCC---------cEEEEeCCCCccCCcccccCCCCCCCCccc
Q 001184 1047 IAPSA-YMSQASPNSQTVFPLVVTSHPQEP-NQLAVGLTDG---------SVKVIEPSETERKWGVAVPVDNGTDNCRTV 1115 (1130)
Q Consensus 1047 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~Dg---------~v~vW~~~~~~~~w~~~~p~~~~~~~~~~~ 1115 (1130)
+.... ....+..++..+.++...+.+.-+ .+||+-+.++ ..++-+...-..+-+....++++ +.+|.+
T Consensus 271 F~i~~~~~iDgvs~TDGi~v~~~~lg~~fp~Gl~VvqDg~N~~~~~~~~qNFK~v~w~~I~~~l~l~~~~~~~-~~pr~~ 349 (353)
T d1h6la_ 271 FQITDGPETDGTSDTDGIDVLGFGLGPEYPFGLFVAQNGENIDHGQKANQNFKMVPWERIADKIGFHPQVNKQ-VDPRKM 349 (353)
T ss_dssp EEECCCSSSCCCCSCCCEEEECSCCSTTCTTCEEEEEESSCEETTEECCCEEEEEETHHHHGGGTCCCCTTSC-CCTTSC
T ss_pred EEEecCCCcCccccCchheEEcccCCCCCCCeeEEEEcCCcccCCcccCCceEEeeHHHHHHhhCCCcccccc-cCCCCC
Confidence 33111 011122244445555444433222 3555544332 26666665544444455555554 446665
Q ss_pred cC
Q 001184 1116 TS 1117 (1130)
Q Consensus 1116 ~~ 1117 (1130)
++
T Consensus 350 ~~ 351 (353)
T d1h6la_ 350 TD 351 (353)
T ss_dssp CC
T ss_pred CC
Confidence 53
|
| >d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.25 E-value=0.0013 Score=48.91 Aligned_cols=55 Identities=16% Similarity=0.269 Sum_probs=44.1
Q ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHhcCCCcc--HHHHHHHHhccCHHHHHHHhcc
Q 001184 5 SRELVFLILQFLDEEKFKESVHRLEQESGFFFN--MKYFEEKALAGEWDEIEKYLSG 59 (1130)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~--~~~~~~~i~~g~w~~~~~~l~~ 59 (1130)
++|+.+-|++||..+||.+++.+|.+|+++.++ ...-..-++.-+|..++.+-.+
T Consensus 7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~~~~~~ky~glLEKKWtSViRLQkK 63 (76)
T d1uuja_ 7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKK 63 (76)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCCChhhhhhhcCcchhHHHHHHHHHHH
Confidence 578999999999999999999999999998765 4455556677777777654443
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.67 E-value=1.6 Score=44.08 Aligned_cols=188 Identities=13% Similarity=0.170 Sum_probs=109.3
Q ss_pred EEEEEcCCCcEEEEecCCCeeeEecCCCcCEEEEeecc----cCCccEEEEEec--C--CcEEEEEccCCccee-eecCC
Q 001184 470 CIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQ----KENIHFIFSTAV--D--GKIKAWLYDNVGSRV-DYDAP 540 (1130)
Q Consensus 470 ~l~s~s~d~~v~iwd~~~~~~~~~~~h~~~v~~~~~~~----~~~~~~l~s~s~--d--g~i~vwd~~~~~~~~-~~~~~ 540 (1130)
+++....++-|++||++|+.+..+. .++++.+..-. ......++.++. + .+|.+|.+....... .+...
T Consensus 42 lI~gTdK~~Gl~vYdL~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~~ 119 (353)
T d1h6la_ 42 KLITTNKKSGLAVYSLEGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITDP 119 (353)
T ss_dssp EEEEEETTSCCEEEETTCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSCS
T ss_pred EEEEEcCcCCEEEEcCCCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccccccc
Confidence 6777777778999999999998875 35677665431 122223444442 2 368888876433222 22211
Q ss_pred -------CccEEEEEE--ecC-CCeEEEeeecCCCCcEEEEeeC---CCC----ceeEEEecccCceeEEEEEcCCCCEE
Q 001184 541 -------GLWCTTMLY--SAD-GSRLFSCGTSKEGDSHLVEWNE---SEG----ALKRTYIGFRKKSAGVVQFDTTRNRI 603 (1130)
Q Consensus 541 -------~~~v~~~~~--s~~-~~~l~~~~~~~~~~~~i~~wd~---~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l 603 (1130)
...++.+|+ ++. |...+.... .+|.+..|.+ ..+ +.++.+.. ...+..|.+....+.|
T Consensus 120 ~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~---k~G~v~q~~l~~~~~g~v~~~lvr~f~~--~~q~EGCVvDde~~~L 194 (353)
T d1h6la_ 120 NRPIASAIDEVYGFSLYHSQKTGKYYAMVTG---KEGEFEQYELNADKNGYISGKKVRAFKM--NSQTEGMAADDEYGSL 194 (353)
T ss_dssp SSCEECSSSSCCCEEEEECTTTCCEEEEEEC---SSSEEEEEEEEECTTSSEEEEEEEEEEC--SSCEEEEEEETTTTEE
T ss_pred ccccccccCcceEEEEEecCCCCeEEEEEEc---CCceEEEEEEEcCCCCceeeEeeeccCC--CCccceEEEeCCCCcE
Confidence 123566666 554 544444432 3677777755 233 34455553 2357788899999999
Q ss_pred EEEeCCCcEEEEeCCC--C---ceeEEEeccCCCCCcceEEEc--C--CCCEEEEEeCCCcEEEEEcCCC
Q 001184 604 LAAGEDNQIKFWDMDN--V---NMLTSTEAEGGLPSLPRLRFN--K--EGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 604 ~~~~~dg~i~vwd~~~--~---~~~~~~~~~~~~~~i~~v~~s--~--~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+.+-++..|+.++++. . ..+.......-...+-.++.- . +|-+|++...+++..+|+....
T Consensus 195 yisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp EEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999988777776642 1 222222221112345556543 2 3445566666789999997653
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.65 E-value=2.8 Score=42.73 Aligned_cols=181 Identities=12% Similarity=0.080 Sum_probs=106.9
Q ss_pred CceeEEEEecCCCEEEEEeCCeEEEEECCC-----------ceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEE
Q 001184 834 DVVPCVALSKNDSYVMSAGGGKVSLFNMMN-----------FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIY 902 (1130)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~dg~i~iwd~~~-----------~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iw 902 (1130)
....-+++++...++++|+...+.|..+.. ........ -..|..++|+. + .|++. .++.+..+
T Consensus 37 ~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs~-d--~l~v~-~~~~l~~~ 110 (381)
T d1xipa_ 37 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFHG-D--QVLVS-TRNALYSL 110 (381)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEET-T--EEEEE-ESSEEEEE
T ss_pred cccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccC--CCCeEEEEeeC-C--EEEEE-eCCCEEEE
Confidence 445678999988888888866777876431 11111121 23689999976 3 35444 45568888
Q ss_pred EeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceee--EeccCCCCCCCeEEEEEcCCCcEE
Q 001184 903 NVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIA--IQLPAGKLPVGETRVQFHSDQVRL 980 (1130)
Q Consensus 903 d~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~d~~~l 980 (1130)
+..+-........-..++.++.++|. .++....++.+.++++..++...... .... ....+.+++|++.|..+
T Consensus 111 ~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~---~~~~~~~v~ws~kgkq~ 185 (381)
T d1xipa_ 111 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFD---VTNSQLAVLLKDRSFQS 185 (381)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEE---ECSSEEEEEETTSCEEE
T ss_pred EeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEE---ecCCceEEEEeCCcEEE
Confidence 87764444444444566888888775 67777889999999998865322110 0000 01457777888888777
Q ss_pred EEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEE
Q 001184 981 LVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYAT 1027 (1130)
Q Consensus 981 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~ 1027 (1130)
+++.++...+.. .......+.........|.+|.|..+..++++=
T Consensus 186 v~~~g~~~q~k~--~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 186 FAWRNGEMEKQF--EFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp EEEETTEEEEEE--EECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEeCCCceeecc--CCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence 776443333211 011111112111224578899999777777654
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.64 E-value=0.63 Score=46.19 Aligned_cols=229 Identities=12% Similarity=0.055 Sum_probs=108.1
Q ss_pred CeEEEEECCCceeEEE--EeCCCCCeEEEEEeCCCCcEEEEEeCC---------CcEEEEEeecCeEEEEEecCCCCeeE
Q 001184 854 GKVSLFNMMNFKVMTT--FMSPPPASTFLAFHPQDNNIIAIGMED---------STIQIYNVRVDEVKTKLKGHQKHITG 922 (1130)
Q Consensus 854 g~i~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~~~~~lasg~~d---------g~v~iwd~~~~~~~~~l~~h~~~V~~ 922 (1130)
..+.+||+.+++-... +....... +++.. ++.+++.|+.. ..+.+||..+.+....-......-..
T Consensus 19 ~~~~~yd~~t~~W~~~~~~p~~R~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~ 95 (288)
T d1zgka1 19 SYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI 95 (288)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSC-EEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC
T ss_pred ceEEEEECCCCeEEECCCCCCcccee-EEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecce
Confidence 3588999988654332 22211112 22222 55677766531 35778887765543221111111111
Q ss_pred EEEccCCCeEEEEeCCCc-----EEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE-Ec-----CCcEEEE
Q 001184 923 LAFSTNLNILVSSGSDAQ-----LIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NH-----ETQLAIY 991 (1130)
Q Consensus 923 l~~s~dg~~L~s~s~Dg~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~-----d~~i~v~ 991 (1130)
.+...+++.++.++.++. ...++..+..... .........-...... ++..++. +. ...+..|
T Consensus 96 ~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~ 169 (288)
T d1zgka1 96 GVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHL-----VAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECY 169 (288)
T ss_dssp EEEEETTEEEEECCEETTEECCCEEEEETTTTEEEE-----CCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEE
T ss_pred eccccceeeEEecceecccccceeeeeccccCcccc-----ccccccccccceeeee-eecceEecCcccccccceEEEe
Confidence 122225666665554333 4456666543211 1111111111122222 3334443 22 3458889
Q ss_pred ECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCC-----CcEEEEeCCCcccccccCCCcccccCCCCCceeeeE
Q 001184 992 DGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPL 1066 (1130)
Q Consensus 992 d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1130)
|..+.+....-.... .....+++. .++++++.++.+ ....++|..+.+....-.... +. ..+ .+
T Consensus 170 d~~~~~~~~~~~~~~--~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~r---~~~---~~ 238 (288)
T d1zgka1 170 YPERNEWRMITAMNT--IRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH--RR---SAL---GI 238 (288)
T ss_dssp ETTTTEEEECCCCSS--CCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSS--CC---BSC---EE
T ss_pred ecccccccccccccc--ccccccccc-eeeeEEEecCccccccccceeeeeecceeeecccCccC--cc---cce---EE
Confidence 988766543322111 111122222 346666666644 356778877765443221111 11 011 11
Q ss_pred EEEEcCCCCCEEEEEeCCCc-----EEEEeCCCCccCCcccccCCCC
Q 001184 1067 VVTSHPQEPNQLAVGLTDGS-----VKVIEPSETERKWGVAVPVDNG 1108 (1130)
Q Consensus 1067 ~~~~~~~~~~~l~s~~~Dg~-----v~vW~~~~~~~~w~~~~p~~~~ 1108 (1130)
+.. ++++++.|+.++. |.+||+.+.. |....|.+.+
T Consensus 239 -~~~---~~~l~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~ 279 (288)
T d1zgka1 239 -TVH---QGRIYVLGGYDGHTFLDSVECYDPDTDT--WSEVTRMTSG 279 (288)
T ss_dssp -EEE---TTEEEEECCBCSSCBCCEEEEEETTTTE--EEEEEECSSC
T ss_pred -EEE---CCEEEEEecCCCCeecceEEEEECCCCE--EEECCCCCCC
Confidence 221 4678888877653 7789998865 9888776654
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=93.22 E-value=2.8 Score=37.68 Aligned_cols=219 Identities=11% Similarity=0.111 Sum_probs=115.6
Q ss_pred CCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001184 358 FHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYT 437 (1130)
Q Consensus 358 dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd 437 (1130)
++..+++.+...|.|.++-+..++.+.-. ..+|. ++++-+ .+-|..+.+-|
T Consensus 24 ~~d~ll~~~~seG~vni~~l~g~~~vkLt----------------------kePI~---~~~~Pk----~~ldfi~f~RD 74 (313)
T d2hu7a1 24 DGDKLLVVGFSEGSVNAYLYDGGETVKLN----------------------REPIN---SVLDPH----YGVGRVILVRD 74 (313)
T ss_dssp TTTEEEEEEEETTEEEEEEESSSSCEECC----------------------SSCCS---EECEEC----TTBSEEEEEEE
T ss_pred cCCcEEEEEeccceEEEEEEeCCEEEEEe----------------------ccccc---CcCCCc----cCcceEEEEee
Confidence 34457888888999999999988876410 11111 111100 00122233444
Q ss_pred ecCCccceeeee-----------eecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecC--CCcCEEEE-
Q 001184 438 YQGSNDLCQSLE-----------IDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEG--HEAPVYSV- 503 (1130)
Q Consensus 438 ~~~~~~~~~~~~-----------~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~--h~~~v~~~- 503 (1130)
+..|+..+..+. +. ...+|.-++..-|++. .+.+|+....+.+|-.+|..++.+.. .-+-|+.+
T Consensus 75 V~kGkE~Hai~~~Nlk~~GEE~~i~-spk~vRI~S~~yddk~-vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~ 152 (313)
T d2hu7a1 75 VSKGAEQHALFKVNTSRPGEEQRLE-AVKPMRILSGVDTGEA-VVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIR 152 (313)
T ss_dssp CSTTSCCEEEEEEETTSTTCEEECT-TSCSBEEEEEEECSSC-EEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEE
T ss_pred hhcCcceeeEEEEccCCCCeeeEec-CCceEEEEEeeecCce-EEEecccCCceEEEEEeCCceeeeccCCCcceEEecc
Confidence 444443322211 11 1223555555556766 67778777788888866666665542 12233333
Q ss_pred -------eecccCCccEEEEEec-CCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC
Q 001184 504 -------CPHQKENIHFIFSTAV-DGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1130)
Q Consensus 504 -------~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1130)
.+. .++..-++++.. .|.++++ ....+.++...+.++.+. ++.-. .-+.....-+|.+
T Consensus 153 ~d~I~G~g~~-~g~~~sfF~adl~SG~lri~-----------tpkeGS~~~ay~~~gnKV-~sdyE-t~gEsywit~D~~ 218 (313)
T d2hu7a1 153 GDLIAGLGFF-GGGRVSLFTSNLSSGGLRVF-----------DSGEGSFSSASISPGMKV-TAGLE-TAREARLVTVDPR 218 (313)
T ss_dssp TTEEEEEEEE-ETTEEEEEEEETTTEEEEEE-----------CCSSEEEEEEEECTTSCE-EEEEE-ESSCEEEEEECTT
T ss_pred CCeEEEEeee-cCCcceEEEEecccCCEEEe-----------cCCCCcccceeEccCcee-eeccC-CCCceEEEEEecc
Confidence 221 111122333333 4444444 444555666666666655 43332 2224444466888
Q ss_pred CCceeEEEe------cccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 001184 576 EGALKRTYI------GFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNML 623 (1130)
Q Consensus 576 ~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 623 (1130)
+++..+.-. ......+.-+-+.|+++.++.+-.||.-++|. +|+.+
T Consensus 219 s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~i 270 (313)
T d2hu7a1 219 DGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI--DGERV 270 (313)
T ss_dssp TCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE--TTEEE
T ss_pred cCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchheee--cceEe
Confidence 776543211 11222455566899999989999999999986 45444
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.62 E-value=4.7 Score=40.98 Aligned_cols=188 Identities=10% Similarity=-0.044 Sum_probs=107.0
Q ss_pred ccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCC-cceeccCCCCCCCceeEEEEecCC
Q 001184 767 ASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNG-LLMTNDVPENAEDVVPCVALSKND 845 (1130)
Q Consensus 767 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~~~~~~~~~~i~~l~~s~dg 845 (1130)
.....-+++++....+++++.++ +.|.....-.. .. -...... .... .....|..++|+.|
T Consensus 36 ~~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~-----~~------~~~~~~~~~~~~-----~~ip~v~~vafs~d- 97 (381)
T d1xipa_ 36 FASLQNLDISNSKSLFVAASGSK-AVVGELQLLRD-----HI------TSDSTPLTFKWE-----KEIPDVIFVCFHGD- 97 (381)
T ss_dssp SSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHH-----HH------HSSSCCCCCSEE-----EECTTEEEEEEETT-
T ss_pred ccccceEEEeCCCCEEEEECCCE-EEEEEHHHHHH-----Hh------hccCCCCcceec-----cCCCCeEEEEeeCC-
Confidence 34556788888777777777765 44544221000 00 0000000 0011 11235888999755
Q ss_pred CEEEEEeCCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEe-----cCCCCe
Q 001184 846 SYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLK-----GHQKHI 920 (1130)
Q Consensus 846 ~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-----~h~~~V 920 (1130)
.+++..++.+..++..+............++..+.+.| . .++....+|.+.++++..++...... .-.+.+
T Consensus 98 -~l~v~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p-~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~ 173 (381)
T d1xipa_ 98 -QVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQ 173 (381)
T ss_dssp -EEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSE
T ss_pred -EEEEEeCCCEEEEEeeccccccccccccccccceecCC-c--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCc
Confidence 57777788889898877555555444456688888877 3 56667778999999998775432211 123568
Q ss_pred eEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE
Q 001184 921 TGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1130)
Q Consensus 921 ~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 982 (1130)
.+++|++.|+.++++..++.-.--++.... ....+ ......+.+|.|-.+..++++
T Consensus 174 ~~v~ws~kgkq~v~~~g~~~q~k~~i~~~~-----~~~~p-~~~~~~v~sI~WL~~~~F~vv 229 (381)
T d1xipa_ 174 LAVLLKDRSFQSFAWRNGEMEKQFEFSLPS-----ELEEL-PVEEYSPLSVTILSPQDFLAV 229 (381)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCH-----HHHTS-CTTTSEEEEEEESSSSEEEEE
T ss_pred eEEEEeCCcEEEEEeCCCceeeccCCCCcc-----ccCCC-cCCCcceeEEEEecCceEEEE
Confidence 888888888888776443211111111100 00111 112256789999988888876
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.44 E-value=1.6 Score=42.90 Aligned_cols=189 Identities=15% Similarity=0.084 Sum_probs=86.4
Q ss_pred CCCEEEEEe-----C-----CeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCc-----EEEEEeecCe
Q 001184 844 NDSYVMSAG-----G-----GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDST-----IQIYNVRVDE 908 (1130)
Q Consensus 844 dg~~la~~~-----d-----g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~-----v~iwd~~~~~ 908 (1130)
++++++.|+ + ..+.+||..+.+....-......-...+..- ++++++.++.++. +..++..+..
T Consensus 50 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~~~-~~~i~~~gg~~~~~~~~~~~~~~~~~~~ 128 (288)
T d1zgka1 50 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDE 128 (288)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceecccc-ceeeEEecceecccccceeeeeccccCc
Confidence 566666554 1 3478889877655432211111111112222 5666666655544 3445655544
Q ss_pred EEEEEecCCCCe-eEEEEccCCCeEEEEeCC-----CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE
Q 001184 909 VKTKLKGHQKHI-TGLAFSTNLNILVSSGSD-----AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1130)
Q Consensus 909 ~~~~l~~h~~~V-~~l~~s~dg~~L~s~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 982 (1130)
-...-....... .++.. .++..++.++.+ ..+..||..+.+.... ............... ++.+++.
T Consensus 129 ~~~~~~~~~~r~~~~~~~-~~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~i~i~ 201 (288)
T d1zgka1 129 WHLVAPMLTRRIGVGVAV-LNRLLYAVGGFDGTNRLNSAECYYPERNEWRMI-----TAMNTIRSGAGVCVL-HNCIYAA 201 (288)
T ss_dssp EEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEC-----CCCSSCCBSCEEEEE-TTEEEEE
T ss_pred cccccccccccccceeee-eeecceEecCcccccccceEEEeeccccccccc-----cccccccccccccce-eeeEEEe
Confidence 322111111111 11122 234455555543 3477888776443211 111111111222332 3344443
Q ss_pred -Ec-----CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCC-----cEEEEeCCCccc
Q 001184 983 -NH-----ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG-----SIGVFDADSLRL 1043 (1130)
Q Consensus 983 -~~-----d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg-----~i~vwd~~~~~~ 1043 (1130)
+. -.....||..+.+....-..... .... +++ ..++++++.|+.++ .|.+||+.+...
T Consensus 202 GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-r~~~-~~~-~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W 270 (288)
T d1zgka1 202 GGYDGQDQLNSVERYDVETETWTFVAPMKHR-RSAL-GIT-VHQGRIYVLGGYDGHTFLDSVECYDPDTDTW 270 (288)
T ss_dssp CCBCSSSBCCCEEEEETTTTEEEECCCCSSC-CBSC-EEE-EETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred cCccccccccceeeeeecceeeecccCccCc-ccce-EEE-EECCEEEEEecCCCCeecceEEEEECCCCEE
Confidence 22 24577888887665443222110 1111 222 23788888887554 378999987653
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=88.09 E-value=14 Score=36.79 Aligned_cols=186 Identities=11% Similarity=0.063 Sum_probs=100.0
Q ss_pred EEEEcCCCCEEEEEeC------------CCeEEEEEecCCccceeeeeeecCC-----CCeeEEEE--ecCCCceEEEEE
Q 001184 414 RVAWSPDGNFIGVAFT------------KHLIHLYTYQGSNDLCQSLEIDAHV-----GGVNDLAF--SYPNKQLCIVTC 474 (1130)
Q Consensus 414 ~v~~spdg~~las~~~------------d~~i~vwd~~~~~~~~~~~~~~~h~-----~~V~~i~~--s~d~~~l~l~s~ 474 (1130)
.++..|||..+++++. .|.|.++|+++.+.......+.+.. -.-..+.. .+||+. +|+..
T Consensus 39 Di~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~-~L~vv 117 (340)
T d1v04a_ 39 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTV-YLLVV 117 (340)
T ss_dssp EEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCE-EEEEE
T ss_pred eEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcE-EEEEE
Confidence 5778899887766542 4889999998765433222222211 12234443 456664 34433
Q ss_pred ---cCCCcEEEEe--cCCCeee---EecC-CCcCEEEEeecccCCccEEEEEec---------------CCcEEEEEccC
Q 001184 475 ---GDDKLIRVWD--LSGRKLF---QFEG-HEAPVYSVCPHQKENIHFIFSTAV---------------DGKIKAWLYDN 530 (1130)
Q Consensus 475 ---s~d~~v~iwd--~~~~~~~---~~~~-h~~~v~~~~~~~~~~~~~l~s~s~---------------dg~i~vwd~~~ 530 (1130)
....+|.+++ ..+..+. ++.. .....+.+++. +++.+++|-.. -+...+|..+.
T Consensus 118 nH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~--~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~ 195 (340)
T d1v04a_ 118 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV--GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 195 (340)
T ss_dssp ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE--ETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred eccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEe--cCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence 3456788888 3333322 2221 22346677664 34456666311 12334555544
Q ss_pred CcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEE-ecccCceeEEEEEcCCCCEEEEE
Q 001184 531 VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY-IGFRKKSAGVVQFDTTRNRILAA 606 (1130)
Q Consensus 531 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~ 606 (1130)
........ .-...+.++++||+++|+++.. ..++|+.|++......... ...-......+.+.+.+..+.++
T Consensus 196 ~~~~~~~~-~l~~pNGI~~s~d~~~lyVa~t---~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva 268 (340)
T d1v04a_ 196 NDVRVVAE-GFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVG 268 (340)
T ss_dssp SCEEEEEE-EESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred CceEEEcC-CCCccceeEECCCCCEEEEEeC---CCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEE
Confidence 44333222 2345789999999999988764 3678999888654322211 11122245557776644334443
|
| >d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.13 E-value=0.62 Score=40.41 Aligned_cols=67 Identities=16% Similarity=0.276 Sum_probs=51.0
Q ss_pred ccchhhhHHHHHhHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccccccccccccCC
Q 001184 67 RYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYG 134 (1130)
Q Consensus 67 ~~~~~~~~~i~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~ 134 (1130)
++.. ++|.|+-+.||||+..|....|..|+++--.-+.....+++++|..+.......+++....+.
T Consensus 41 EL~~-lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~I~~L~~i~~~~~l~~n~~~~~~r 107 (149)
T d2nxpa1 41 ELSQ-LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFR 107 (149)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGC
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCHHHHhhhHHHHHHh
Confidence 4444 999999999999999999999999999754444444668888998887776666555544343
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=86.08 E-value=17 Score=37.92 Aligned_cols=109 Identities=17% Similarity=0.111 Sum_probs=60.9
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEE--EEe------cCCCCeeEEEEccC---CCeEEE-Ee-----
Q 001184 874 PPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKT--KLK------GHQKHITGLAFSTN---LNILVS-SG----- 936 (1130)
Q Consensus 874 ~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~--~l~------~h~~~V~~l~~s~d---g~~L~s-~s----- 936 (1130)
-....+|+|.| +++++++--..|.|++++..+++... .+. .-.+....|+|+|+ ..++.. -+
T Consensus 26 L~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~ 104 (450)
T d1crua_ 26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (450)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCC
Confidence 34678999999 88888766557999999877765432 221 11245678999986 233332 21
Q ss_pred -CC----C--cEEEEECCCCcccce---eeEeccCCCCCCCeEEEEEcCCCcEEEEE
Q 001184 937 -SD----A--QLIFWNTDTWEKRKS---IAIQLPAGKLPVGETRVQFHSDQVRLLVN 983 (1130)
Q Consensus 937 -~D----g--~i~vwd~~~~~~~~~---~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 983 (1130)
.+ . .+..+.......... ................++|.|||.+.++.
T Consensus 105 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~ 161 (450)
T d1crua_ 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTI 161 (450)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEE
T ss_pred CcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEe
Confidence 11 1 133333333222111 11111111222456899999999877763
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=85.30 E-value=18 Score=37.73 Aligned_cols=60 Identities=12% Similarity=0.163 Sum_probs=40.1
Q ss_pred CCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEecc--CCCCCCCeEEEEEcCC
Q 001184 917 QKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLP--AGKLPVGETRVQFHSD 976 (1130)
Q Consensus 917 ~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~d 976 (1130)
-..-++|+|.|||++|++--..|.|++++..+++.......... ..........++|+|+
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 45678999999999888775679999998877654322221111 1112256788999985
|